Citrus Sinensis ID: 026356

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Protein Sequence
MKMEEEKVKAAEEEETWSKETVPKVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQQLL
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHcccccEEcccccccccHHHHHHHHHHccccccEEEccccccccHHHHHHHHHHcccccccccEEcccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEcccccccccHHHHHHHHHccccccEEcccccccccHHHHHHHHHHcHHHHHHHHHcccccccHHHHHccccccHHHHHHHHHccccccHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHccccccEEEccccccccHHHHHHHHHHccccccEEEccccccccHHHHHHHHHHcccHHHHccEEEccccHHccHHHHHHHHHHcccccEEEccccHHccHHHHHHHHHHcccccEEEccccHHccHHHHHHHHHHcccccEEEcccccHccHHHHHHHHHccHHHHHEEEccccHHHHHHHHHHccccccHHHHHHHccccccHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MKMEEEKVKAAEEEetwsketvpkvIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKclgslqdleslnlngcqkisdKGIEIIsstcpelkvfSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQinssnggdhLAFAYIIETntykhgkekHIIETIKTGQQLL
Flexible Loop (DISEMBL)
mkmeeekvkaaeeeetwsketvpkvidlremnnAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNtykhgkekHIIETIKTGQQLL
Low Complexity Region (SEG)
mkmeeekvkaaeeeeTWSKETVPKVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQQLL
Disordered region (IsUnstruct)
***********************KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI*******
Disordered Region (DISOPRED)
MKMEEEKVKAAEEEETWSKETVPKVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQQLL
Disordered Region (DISEMBL)
******************KETVPKVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQQLL
Disordered Region (DISPRO)
*KMEEEKVKAAEEEETWSKETVPKVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQQLL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKMEEEKVKAAEEEETWSKETVPKVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQQLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	240	2.2.26 [Sep-21-2011]
Q8LB33	353	F-box protein At3g58530 O	yes	no	0.608	0.413	0.671	9e-55
Q6NW95	296	F-box/LRR-repeat protein	yes	no	0.608	0.493	0.276	1e-11
P34284	466	Uncharacterized F-box/LRR	yes	no	0.437	0.225	0.314	5e-10
A6H779	423	F-box/LRR-repeat protein	yes	no	0.537	0.304	0.315	1e-09
Q9LPL4	360	F-box protein SKP2A OS=Ar	no	no	0.537	0.358	0.307	2e-09
Q9UJT9	491	F-box/LRR-repeat protein	no	no	0.545	0.266	0.294	5e-09
Q0P4D1	249	Protein AMN1 homolog OS=D	no	no	0.291	0.281	0.365	5e-09
Q5BJ29	491	F-box/LRR-repeat protein	yes	no	0.545	0.266	0.287	9e-09
B5X441	292	F-box/LRR-repeat protein	N/A	no	0.554	0.455	0.239	9e-09
Q8BH16	423	F-box/LRR-repeat protein	no	no	0.537	0.304	0.293	1e-08

>sp|Q8LB33|FB330_ARATH F-box protein At3g58530 OS=Arabidopsis thaliana GN=At3g58530 PE=2 SV=1

 Score =  213 bits (542), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 102/152 (67%), Positives = 126/152 (82%)

Query: 26  IDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNL 85
           I+LREM NAG+RL+AALS+PRYR V+ INLEFAQ + D HL+L+KT+C  +L  LE LNL
Sbjct: 59  INLREMTNAGDRLLAALSLPRYRQVKHINLEFAQGVVDSHLKLVKTECPDALLSLEWLNL 118

Query: 86  NGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLD 145
           N CQKISD GIE I+S CP+LKVFSIYWNVRVTD GI++LVKNC+HI DLNLSGCK+L D
Sbjct: 119 NVCQKISDNGIEAITSICPKLKVFSIYWNVRVTDAGIRNLVKNCRHITDLNLSGCKSLTD 178

Query: 146 KSLQLIADNYQELESLNLTRYVNMILLGLFYI 177
           KS+QL+A++Y +LESLN+TR V +   GL  +
Sbjct: 179 KSMQLVAESYPDLESLNITRCVKITDDGLLQV 210

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NW95|FXL15_DANRE F-box/LRR-repeat protein 15 OS=Danio rerio GN=fbxl15 PE=2 SV=2

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 17/163 (10%)

Query: 26  IDLREMNNAGNRLVAA--LSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQD---- 79
           +DLR       R + A  LS PR +H     L  A      H E + +  L SL D    
Sbjct: 116 VDLRGCAQLSRRALVAVSLSCPRLQH-----LSLA------HCEWVDSLALRSLADHCPM 164

Query: 80  LESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSG 139
           L SL+L  C+++ D  +  ++  CPEL+  S+  N  +TD  ++ + K C+ +  L+L+G
Sbjct: 165 LRSLDLTACRQLKDPAVCYLAGKCPELRALSVAVNANITDTAVEEVAKKCREMERLDLTG 224

Query: 140 CKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNI 182
           C  + +++++ +A+   +L+SL +    N+    L  +   N+
Sbjct: 225 CLRVRNEAIRTLAEYCPKLQSLKVNHCHNVTESSLGVLRRRNV 267

Substrate recognition component of a (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Acts as a positive regulator of the BMP signaling pathway (By similarity). Required for dorsal/ventral pattern formation.

Danio rerio (taxid: 7955)

>sp|P34284|YKK7_CAEEL Uncharacterized F-box/LRR-repeat protein C02F5.7 OS=Caenorhabditis elegans GN=C02F5.7 PE=4 SV=3

 Score = 64.7 bits (156), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 3/108 (2%)

Query: 57  FAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVR 116
           F +D++   +E L  +C G L++L   +L GC+ + D  +   +S CP L+  S+Y   R
Sbjct: 105 FQRDVKTAVVENLARRCGGFLKEL---SLKGCENVHDSALRTFTSRCPNLEHLSLYRCKR 161

Query: 117 VTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLT 164
           VTD   ++L + C  +  LNL  C ++ D++++ I D    L  LN++
Sbjct: 162 VTDASCENLGRYCHKLNYLNLENCSSITDRAMKYIGDGCPNLSYLNIS 209

Caenorhabditis elegans (taxid: 6239)

>sp|A6H779|FBXL2_BOVIN F-box/LRR-repeat protein 2 OS=Bos taurus GN=FBXL2 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 4/133 (3%)

Query: 48  RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELK 107
           RH+  +NL +   I    +E L   C G    L +L L GC ++ D+ ++ I + C EL 
Sbjct: 156 RHLEYLNLSWCDQITKDGVEALVRGCRG----LRALLLRGCTQLEDEALKHIQNYCHELV 211

Query: 108 VFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYV 167
             ++    RVTD G+  L + C  +  L LSGC +L D SL  +A N   L+ L   R  
Sbjct: 212 SLNLQSCSRVTDDGVVQLCRGCPRLQALCLSGCGSLTDASLTALALNCPRLQILEAARCS 271

Query: 168 NMILLGLFYIWSN 180
           ++   G   +  N
Sbjct: 272 HLTDAGFTLLARN 284

Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation.

Bos taurus (taxid: 9913)

>sp|Q9LPL4|SKP2A_ARATH F-box protein SKP2A OS=Arabidopsis thaliana GN=SKP2A PE=1 SV=1

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 77/140 (55%), Gaps = 11/140 (7%)

Query: 28  LREMNNAGNRLVAALSIPRYRHVREINLEFAQD---IEDRHLELLKTKCLGSLQDLESLN 84
           L   NN  N LV +L +P++  ++ +NL   QD   +ED  +E +   C     +L+ L+
Sbjct: 71  LSWCNNNMNSLVLSL-VPKFVKLQTLNLR--QDKPQLEDNAVEAIANHC----HELQELD 123

Query: 85  LNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGC-KNL 143
           L+   KI+D+ +  ++  CP+L   ++      +D  I +L + C+ +  LNL GC K +
Sbjct: 124 LSKSLKITDRSLYALAHGCPDLTKLNLSGCTSFSDTAIAYLTRFCRKLKVLNLCGCVKAV 183

Query: 144 LDKSLQLIADNYQELESLNL 163
            D +L+ I +N  +++SLNL
Sbjct: 184 TDNALEAIGNNCNQMQSLNL 203

Component of SCF(SKP2A) E3 ubiquitin ligase complexes, which mediate the ubiquitination and subsequent proteasomal degradation of target proteins (including cell cycle repressors). Acts as an auxin receptor. Regulates the stability of the transcription factors E2FC and DPB, repressors of cell proliferation. Confers increase tolerance to osmotic stress by promoting cell division, especially in meristems. Promotes the formation of lateral root primordia.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9UJT9|FBXL7_HUMAN F-box/LRR-repeat protein 7 OS=Homo sapiens GN=FBXL7 PE=2 SV=1

 Score = 61.6 bits (148), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 74/139 (53%), Gaps = 8/139 (5%)

Query: 25  VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLN 84
           V D R +++ G R +A L   R R++   +     D+  R++    +K       L  LN
Sbjct: 331 VSDCRFVSDFGLREIAKLE-SRLRYLSIAHCGRVTDVGIRYVAKYCSK-------LRYLN 382

Query: 85  LNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLL 144
             GC+ I+D G+E ++  C +LK   I     V+D G++ L  NC ++  L+L  C+++ 
Sbjct: 383 ARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLECLALNCFNLKRLSLKSCESIT 442

Query: 145 DKSLQLIADNYQELESLNL 163
            + LQ++A N  +L++LN+
Sbjct: 443 GQGLQIVAANCFDLQTLNV 461

Substrate recognition component of a (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of AURKA during mitosis, causing mitotic arrest.

Homo sapiens (taxid: 9606)

>sp|Q0P4D1|AMN1_DANRE Protein AMN1 homolog OS=Danio rerio GN=amn1 PE=2 SV=1

 Score = 61.6 bits (148), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 50/82 (60%)

Query: 80  LESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSG 139
           L ++ L GC +I+ +G+E+++  CP L+V  +     VTD GIQ L ++CK +  ++L G
Sbjct: 82  LRTILLRGCAEITSEGLEVLAPRCPYLQVVDLTGCTAVTDSGIQALARHCKCLEVISLRG 141

Query: 140 CKNLLDKSLQLIADNYQELESL 161
           C  L DK+L  +  N + L S+
Sbjct: 142 CSALSDKALLELGGNCKMLHSI 163

Danio rerio (taxid: 7955)

>sp|Q5BJ29|FBXL7_MOUSE F-box/LRR-repeat protein 7 OS=Mus musculus GN=Fbxl7 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 8/139 (5%)

Query: 25  VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLN 84
           V D R +++ G R +A L       +R +++     I D  +  +   C      L  LN
Sbjct: 331 VSDCRFVSDFGLREIAKLE----SRLRYLSIAHCGRITDVGIRYVAKYC----SKLRYLN 382

Query: 85  LNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLL 144
             GC+ I+D G+E ++  C +LK   I     V+D G++ L  NC ++  L+L  C+++ 
Sbjct: 383 ARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLESLALNCFNLKRLSLKSCESIT 442

Query: 145 DKSLQLIADNYQELESLNL 163
            + LQ++A N  +L+ LN+
Sbjct: 443 GQGLQIVAANCFDLQMLNV 461

Substrate recognition component of a (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of AURKA during mitosis, causing mitotic arrest.

Mus musculus (taxid: 10090)

>sp|B5X441|FXL15_SALSA F-box/LRR-repeat protein 15 OS=Salmo salar GN=fbxl15 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 75/138 (54%), Gaps = 5/138 (3%)

Query: 26  IDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNL 85
           +D+R  +      + A+S+    H++ + L   + ++   +  L   C G    L S++L
Sbjct: 112 VDMRGCDRLTRHSLVAVSL-SCTHLQYLGLAHCEWVDSLSIRSLADHCGG----LRSIDL 166

Query: 86  NGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLD 145
             C+++ D+ I  +S  C +++  S+  N  +TD+ ++ + KNC+ +  L+L+GC  + +
Sbjct: 167 TACRQLKDEAICYLSKKCLKMRSLSVAVNANITDVSVEEVAKNCRELEQLDLTGCLRVRN 226

Query: 146 KSLQLIADNYQELESLNL 163
            S++ +A+   +L+SL +
Sbjct: 227 DSIRTVAEYCPKLQSLKV 244

Substrate recognition component of a (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Acts as a positive regulator of the BMP signaling pathway). Required for dorsal/ventral pattern formation (By similarity.

Salmo salar (taxid: 8030)

>sp|Q8BH16|FBXL2_MOUSE F-box/LRR-repeat protein 2 OS=Mus musculus GN=Fbxl2 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 4/133 (3%)

Query: 48  RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELK 107
           R++  +NL +   I    +E L   C G    L++L L GC ++ D+ ++ I + C EL 
Sbjct: 156 RNLEYLNLSWCDQITKEGIEALVRGCRG----LKALLLRGCTQLEDEALKHIQNHCHELV 211

Query: 108 VFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYV 167
             ++    R+TD G+  + + C  +  L LSGC NL D SL  +  N   L+ L   R  
Sbjct: 212 SLNLQSCSRITDDGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQVLEAARCS 271

Query: 168 NMILLGLFYIWSN 180
           ++   G   +  N
Sbjct: 272 HLTDAGFTLLARN 284

Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
297739793	350	unnamed protein product [Vitis vinifera]	0.770	0.528	0.572	3e-63
225441543	353	PREDICTED: F-box protein At3g58530 [Viti	0.770	0.524	0.572	4e-63
255580692	351	ubiquitin-protein ligase, putative [Rici	0.833	0.569	0.548	7e-63
147789108	349	hypothetical protein VITISV_044261 [Viti	0.712	0.489	0.605	1e-62
224088164	341	predicted protein [Populus trichocarpa]	0.575	0.404	0.710	2e-61
356530677	353	PREDICTED: F-box protein At3g58530-like	0.779	0.529	0.508	2e-57
297817168	353	hypothetical protein ARALYDRAFT_486305 [	0.591	0.402	0.684	1e-54
388498858	357	unknown [Lotus japonicus]	0.775	0.521	0.495	2e-53
18410977	353	F-box protein [Arabidopsis thaliana] gi|	0.608	0.413	0.671	5e-53
15450960	353	putative protein [Arabidopsis thaliana]	0.608	0.413	0.671	5e-53

>gi|297739793|emb|CBI29975.3| unnamed protein product [Vitis vinifera]

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 131/229 (57%), Positives = 158/229 (68%), Gaps = 44/229 (19%)

Query: 3   MEEEKVKAAEEEETWSKETVPKVI------------------------------------ 26
           MEE + +A  + + WS+ET+PKV+                                    
Sbjct: 1   MEETEARAGGDLK-WSRETIPKVLRIVGTRLPQRDLISLLLVSPWIHRTLVSCSSLWLVL 59

Query: 27  DLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLN 86
           D RE NNAGNRLVAALS+ RY+HV++INLEFAQDIED+HL+LLKTKCL SLQ+LESLNLN
Sbjct: 60  DFRETNNAGNRLVAALSLFRYQHVKQINLEFAQDIEDKHLDLLKTKCLDSLQELESLNLN 119

Query: 87  GCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDK 146
            CQKISD+G+E I+S CP+LKVFSIYWNVRVTDIG+ HLVKNCKHI+DLNLSGCKN+ DK
Sbjct: 120 VCQKISDRGVETITSACPKLKVFSIYWNVRVTDIGMTHLVKNCKHIVDLNLSGCKNITDK 179

Query: 147 SLQLIADNYQELESLNLTRYVNM-------ILLGLFYIWSNNILLMSEF 188
           SLQLIADNY +LE LNLTR + +       ILL    + S N+  +S F
Sbjct: 180 SLQLIADNYPDLELLNLTRCIKLTDGGLQQILLKCSSLQSLNLYALSSF 228

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441543|ref|XP_002276459.1| PREDICTED: F-box protein At3g58530 [Vitis vinifera]

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 131/229 (57%), Positives = 158/229 (68%), Gaps = 44/229 (19%)

Query: 3   MEEEKVKAAEEEETWSKETVPKVI------------------------------------ 26
           MEE + +A  + + WS+ET+PKV+                                    
Sbjct: 1   MEETEARAGGDLK-WSRETIPKVLRIVGTRLPQRDLISLLLVSPWIHRTLVSCSSLWLVL 59

Query: 27  DLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLN 86
           D RE NNAGNRLVAALS+ RY+HV++INLEFAQDIED+HL+LLKTKCL SLQ+LESLNLN
Sbjct: 60  DFRETNNAGNRLVAALSLFRYQHVKQINLEFAQDIEDKHLDLLKTKCLDSLQELESLNLN 119

Query: 87  GCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDK 146
            CQKISD+G+E I+S CP+LKVFSIYWNVRVTDIG+ HLVKNCKHI+DLNLSGCKN+ DK
Sbjct: 120 VCQKISDRGVETITSACPKLKVFSIYWNVRVTDIGMTHLVKNCKHIVDLNLSGCKNITDK 179

Query: 147 SLQLIADNYQELESLNLTRYVNM-------ILLGLFYIWSNNILLMSEF 188
           SLQLIADNY +LE LNLTR + +       ILL    + S N+  +S F
Sbjct: 180 SLQLIADNYPDLELLNLTRCIKLTDGGLQQILLKCSSLQSLNLYALSSF 228

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580692|ref|XP_002531168.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223529238|gb|EEF31211.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 131/239 (54%), Positives = 161/239 (67%), Gaps = 39/239 (16%)

Query: 3   MEEEKVKAAEEEETWSKETVPKV------------------------------------I 26
           ME +KV   EEE+TWS+ET+PKV                                    +
Sbjct: 1   MERKKV---EEEQTWSRETIPKVMKIVSTTISQKDVISLLLVSPWLHHSLISYPSLWLAL 57

Query: 27  DLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLN 86
           D REMN AG+RL++ALS+PRYRHV++INLEFAQDIEDRHL+++++K   SLQ+LESLNLN
Sbjct: 58  DFREMNKAGDRLISALSLPRYRHVKQINLEFAQDIEDRHLQVIQSKASSSLQNLESLNLN 117

Query: 87  GCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDK 146
           GCQKISDKGIE I+S CP LKVFSIYWNVRVTD+GI+ LV+NCKHI+DLNLSGCKN+ DK
Sbjct: 118 GCQKISDKGIEAITSACPNLKVFSIYWNVRVTDVGIKQLVENCKHIVDLNLSGCKNISDK 177

Query: 147 SLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSN 205
           SLQL+AD YQ++E L+LTR + +   GL  I S    L S  +Y    F      N SN
Sbjct: 178 SLQLVADLYQDIELLDLTRCIKLTDDGLQQILSKCSSLKSLNLYALSTFTDKAYRNISN 236

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147789108|emb|CAN73494.1| hypothetical protein VITISV_044261 [Vitis vinifera]

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 126/208 (60%), Positives = 149/208 (71%), Gaps = 37/208 (17%)

Query: 3   MEEEKVKAAEEEETWSKETVPKVI------------------------------------ 26
           MEE + +A  + + WS+ET+PKV+                                    
Sbjct: 1   MEETEARAGGDLK-WSRETIPKVLRIVGTRLPQRDLISLLLVSPWIHRTLVSCSSLWLVL 59

Query: 27  DLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLN 86
           D RE NNAGNRLVAALS+ RY+HV++INLEFAQDIED+HL+LLKTKCL SLQ+LESLNLN
Sbjct: 60  DFRETNNAGNRLVAALSLFRYQHVKQINLEFAQDIEDKHLDLLKTKCLDSLQELESLNLN 119

Query: 87  GCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDK 146
            CQKISD+G+E I+S CP+LKVFSIYWNVRVTDIG+ HLVKNCKHI+DLNLSGCKN+ DK
Sbjct: 120 XCQKISDRGVETITSACPKLKVFSIYWNVRVTDIGMTHLVKNCKHIVDLNLSGCKNITDK 179

Query: 147 SLQLIADNYQELESLNLTRYVNMILLGL 174
           SLQLIADNY +LE LNLTR   +   GL
Sbjct: 180 SLQLIADNYPDLELLNLTRCXKLTDGGL 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088164|ref|XP_002308350.1| predicted protein [Populus trichocarpa] gi|222854326|gb|EEE91873.1| predicted protein [Populus trichocarpa]

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 118/166 (71%), Positives = 139/166 (83%)

Query: 25  VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLN 84
            +D REMN AG+RL+AA S+PRY+HV+EINLEFAQDIED HLE+L++KC  SLQ LESLN
Sbjct: 46  ALDFREMNKAGDRLIAATSLPRYQHVKEINLEFAQDIEDEHLEVLQSKCFVSLQKLESLN 105

Query: 85  LNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLL 144
           LNGCQKISDKGIE I+STC +LKVFSIYWNVRVTDIGI+H+V+NCK I+DLNLSGCKN+ 
Sbjct: 106 LNGCQKISDKGIEAITSTCSKLKVFSIYWNVRVTDIGIKHVVENCKQIVDLNLSGCKNIS 165

Query: 145 DKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIY 190
           DK+LQLIA+NYQELESLNLTR + +   GL  I S    L S  +Y
Sbjct: 166 DKALQLIAENYQELESLNLTRCIKLTDGGLQQILSKCSSLQSLNLY 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530677|ref|XP_003533907.1| PREDICTED: F-box protein At3g58530-like [Glycine max]

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 119/234 (50%), Positives = 148/234 (63%), Gaps = 47/234 (20%)

Query: 8   VKAAEEEETWSKETVPKVIDL--------------------------------------- 28
           ++   +E+ W +ETVPKV+ L                                       
Sbjct: 1   MEGESKEDVWCRETVPKVLKLVCSTLPLSLSHTNLVSLLLVSPSLHRTLLCSQPLWQSLN 60

Query: 29  -REMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNG 87
            RE+NNAGNRL+AALS+PRY +V++INLEFA+D+ED HL L+  KC  SLQ LESLNLNG
Sbjct: 61  FRELNNAGNRLIAALSLPRYCNVKQINLEFARDVEDAHLILIMDKCFNSLQSLESLNLNG 120

Query: 88  CQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKS 147
           CQKISD GIE I+S CP+LK FSIYWNVRVTD G+QH+VKNCKHIIDLN+SGCKN+ D+ 
Sbjct: 121 CQKISDTGIEAITSCCPQLKSFSIYWNVRVTDRGLQHIVKNCKHIIDLNISGCKNISDQG 180

Query: 148 LQLIADNYQELESLNLTRYVNMILLGL-------FYIWSNNILLMSEFIYHGIR 194
            QL+ADNY ELESLNLTR + +   GL        ++ S N+  +S F     R
Sbjct: 181 AQLVADNYPELESLNLTRCIKLTDDGLKSLLHKCLFLQSLNLYALSSFTDEAYR 234

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817168|ref|XP_002876467.1| hypothetical protein ARALYDRAFT_486305 [Arabidopsis lyrata subsp. lyrata] gi|297322305|gb|EFH52726.1| hypothetical protein ARALYDRAFT_486305 [Arabidopsis lyrata subsp. lyrata]

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 104/152 (68%), Positives = 127/152 (83%)

Query: 26  IDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNL 85
           IDLREM NAG+RL+AALS+PRYR V+ INLEFAQ + D HL+L+K +   +L  LE LNL
Sbjct: 59  IDLREMTNAGDRLLAALSLPRYRQVKHINLEFAQGVVDSHLKLVKAEYPDALLSLECLNL 118

Query: 86  NGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLD 145
           NGCQKISD GIE I+S CP+LKVFSIYWNVRVTD GI+HLVKNC+HIIDLNLSGCK+L D
Sbjct: 119 NGCQKISDNGIEAITSICPKLKVFSIYWNVRVTDAGIRHLVKNCRHIIDLNLSGCKSLTD 178

Query: 146 KSLQLIADNYQELESLNLTRYVNMILLGLFYI 177
           KS+QL+A++YQ+LESL++TR V +   GL  +
Sbjct: 179 KSMQLVAESYQDLESLDITRCVKITDDGLLQV 210

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498858|gb|AFK37495.1| unknown [Lotus japonicus]

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 111/224 (49%), Positives = 140/224 (62%), Gaps = 38/224 (16%)

Query: 13  EEETWSKETVPKVIDL--------------------------------------REMNNA 34
           ++  W +ETVPKV  L                                      RE+NNA
Sbjct: 12  KDHVWCRETVPKVFKLVCSTLPLAHTDLVSLLLVSPSLHRTLVSCQPLWQSLIFREVNNA 71

Query: 35  GNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDK 94
           GNRL+AALS+PRYR+V++I+LEFA+ +ED HL L+K KC  SLQ LESLNLNGCQKISD 
Sbjct: 72  GNRLLAALSLPRYRYVKQIDLEFARHVEDTHLILIKDKCFDSLQSLESLNLNGCQKISDT 131

Query: 95  GIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADN 154
           GIE I+S CP+LK FSIYWNVRVTD  + H V+NCKHI+DLN+SGCK + D+ +Q +A+N
Sbjct: 132 GIEAITSCCPQLKTFSIYWNVRVTDTSLLHTVRNCKHIVDLNISGCKQITDQGIQFVAEN 191

Query: 155 YQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQA 198
           Y ELESLNLTR + +   GL  +    + L S  +Y    F  A
Sbjct: 192 YPELESLNLTRCIKVTDDGLKPLLHQCLSLQSLNLYALSSFTDA 235

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18410977|ref|NP_567069.1| F-box protein [Arabidopsis thaliana] gi|75154905|sp|Q8LB33.1|FB330_ARATH RecName: Full=F-box protein At3g58530 gi|21593045|gb|AAM64994.1| unknown [Arabidopsis thaliana] gi|332646275|gb|AEE79796.1| F-box protein [Arabidopsis thaliana]

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 102/152 (67%), Positives = 126/152 (82%)

Query: 26  IDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNL 85
           I+LREM NAG+RL+AALS+PRYR V+ INLEFAQ + D HL+L+KT+C  +L  LE LNL
Sbjct: 59  INLREMTNAGDRLLAALSLPRYRQVKHINLEFAQGVVDSHLKLVKTECPDALLSLEWLNL 118

Query: 86  NGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLD 145
           N CQKISD GIE I+S CP+LKVFSIYWNVRVTD GI++LVKNC+HI DLNLSGCK+L D
Sbjct: 119 NVCQKISDNGIEAITSICPKLKVFSIYWNVRVTDAGIRNLVKNCRHITDLNLSGCKSLTD 178

Query: 146 KSLQLIADNYQELESLNLTRYVNMILLGLFYI 177
           KS+QL+A++Y +LESLN+TR V +   GL  +
Sbjct: 179 KSMQLVAESYPDLESLNITRCVKITDDGLLQV 210

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15450960|gb|AAK96751.1| putative protein [Arabidopsis thaliana] gi|17978711|gb|AAL47349.1| putative protein [Arabidopsis thaliana]

 Score =  213 bits (542), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 102/152 (67%), Positives = 126/152 (82%)

Query: 26  IDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNL 85
           I+LREM NAG+RL+AALS+PRYR V+ INLEFAQ + D HL+L+KT+C  +L  LE LNL
Sbjct: 59  INLREMTNAGDRLLAALSLPRYRQVKHINLEFAQGVVDSHLKLVKTECPDALLSLEWLNL 118

Query: 86  NGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLD 145
           N CQKISD GIE I+S CP+LKVFSIYWNVRVTD GI++LVKNC+HI DLNLSGCK+L D
Sbjct: 119 NVCQKISDNGIEAITSICPKLKVFSIYWNVRVTDAGIRNLVKNCRHITDLNLSGCKSLTD 178

Query: 146 KSLQLIADNYQELESLNLTRYVNMILLGLFYI 177
           KS+QL+A++Y +LESLN+TR V +   GL  +
Sbjct: 179 KSMQLVAESYPDLESLNITRCVKITDDGLLQV 210

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
TAIR|locus:2076376	353	AT3G58530 [Arabidopsis thalian	0.687	0.467	0.630	4e-51
ZFIN|ZDB-GENE-040426-2440	310	fbxl15 "F-box and leucine-rich	0.625	0.483	0.270	7.7e-13
UNIPROTKB|B5X441	292	fbxl15 "F-box/LRR-repeat prote	0.579	0.476	0.236	2.9e-12
TAIR|locus:2027082	360	SKP2A [Arabidopsis thaliana (t	0.529	0.352	0.298	5.9e-12
WB|WBGene00015350	466	C02F5.7 [Caenorhabditis elegan	0.437	0.225	0.314	1.4e-11
DICTYBASE|DDB_G0287415	1012	DDB_G0287415 "SCF E3 ubiquitin	0.387	0.091	0.408	3.7e-10
UNIPROTKB|E6ZHJ8	292	fbxl15 "F-box/LRR-repeat prote	0.55	0.452	0.242	4.8e-10
UNIPROTKB|A6H779	423	FBXL2 "F-box/LRR-repeat protei	0.633	0.359	0.303	5.8e-10
UNIPROTKB|F1PWK1	422	FBXL2 "Uncharacterized protein	0.633	0.360	0.291	8.3e-10
TAIR|locus:2149805	665	AT5G01720 "AT5G01720" [Arabido	0.370	0.133	0.348	8.8e-10

TAIR|locus:2076376 AT3G58530 [Arabidopsis thaliana (taxid:3702)]

 Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
 Identities = 104/165 (63%), Positives = 130/165 (78%)

Query:    26 IDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNL 85
             I+LREM NAG+RL+AALS+PRYR V+ INLEFAQ + D HL+L+KT+C  +L  LE LNL
Sbjct:    59 INLREMTNAGDRLLAALSLPRYRQVKHINLEFAQGVVDSHLKLVKTECPDALLSLEWLNL 118

Query:    86 NGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLD 145
             N CQKISD GIE I+S CP+LKVFSIYWNVRVTD GI++LVKNC+HI DLNLSGCK+L D
Sbjct:   119 NVCQKISDNGIEAITSICPKLKVFSIYWNVRVTDAGIRNLVKNCRHITDLNLSGCKSLTD 178

Query:   146 KSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIY 190
             KS+QL+A++Y +LESLN+TR V +   GL  +      L +  +Y
Sbjct:   179 KSMQLVAESYPDLESLNITRCVKITDDGLLQVLQKCFSLQTLNLY 223

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

ZFIN|ZDB-GENE-040426-2440 fbxl15 "F-box and leucine-rich repeat protein 15" [Danio rerio (taxid:7955)]

 Score = 173 (66.0 bits), Expect = 7.7e-13, P = 7.7e-13
 Identities = 43/159 (27%), Positives = 82/159 (51%)

Query:    26 IDLREMNNAGNR-LVA-ALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESL 83
             +DLR       R LVA +LS PR +H   ++L   + ++   L  L   C      L SL
Sbjct:   130 VDLRGCAQLSRRALVAVSLSCPRLQH---LSLAHCEWVDSLALRSLADHC----PMLRSL 182

Query:    84 NLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNL 143
             +L  C+++ D  +  ++  CPEL+  S+  N  +TD  ++ + K C+ +  L+L+GC  +
Sbjct:   183 DLTACRQLKDPAVCYLAGKCPELRALSVAVNANITDTAVEEVAKKCREMERLDLTGCLRV 242

Query:   144 LDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNI 182
              +++++ +A+   +L+SL +    N+    L  +   N+
Sbjct:   243 RNEAIRTLAEYCPKLQSLKVNHCHNVTESSLGVLRRRNV 281

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0030282 "bone mineralization" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0030513 "positive regulation of BMP signaling pathway" evidence=ISS

GO:0009953 "dorsal/ventral pattern formation" evidence=IMP

UNIPROTKB|B5X441 fbxl15 "F-box/LRR-repeat protein 15" [Salmo salar (taxid:8030)]

 Score = 167 (63.8 bits), Expect = 2.9e-12, P = 2.9e-12
 Identities = 34/144 (23%), Positives = 77/144 (53%)

Query:    26 IDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNL 85
             +D+R  +      + A+S+    H++ + L   + ++   +  L   C G    L S++L
Sbjct:   112 VDMRGCDRLTRHSLVAVSLS-CTHLQYLGLAHCEWVDSLSIRSLADHCGG----LRSIDL 166

Query:    86 NGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLD 145
               C+++ D+ I  +S  C +++  S+  N  +TD+ ++ + KNC+ +  L+L+GC  + +
Sbjct:   167 TACRQLKDEAICYLSKKCLKMRSLSVAVNANITDVSVEEVAKNCRELEQLDLTGCLRVRN 226

Query:   146 KSLQLIADNYQELESLNLTRYVNM 169
              S++ +A+   +L+SL +    N+
Sbjct:   227 DSIRTVAEYCPKLQSLKVNHCHNV 250

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0009953 "dorsal/ventral pattern formation" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0030282 "bone mineralization" evidence=ISS

GO:0030513 "positive regulation of BMP signaling pathway" evidence=ISS

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

TAIR|locus:2027082 SKP2A [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 5.9e-12, P = 5.9e-12
 Identities = 40/134 (29%), Positives = 75/134 (55%)

Query:    32 NNAGNRLVAALSIPRYRHVREINL-EFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQK 90
             NN  N LV +L +P++  ++ +NL +    +ED  +E +   C     +L+ L+L+   K
Sbjct:    75 NNNMNSLVLSL-VPKFVKLQTLNLRQDKPQLEDNAVEAIANHC----HELQELDLSKSLK 129

Query:    91 ISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGC-KNLLDKSLQ 149
             I+D+ +  ++  CP+L   ++      +D  I +L + C+ +  LNL GC K + D +L+
Sbjct:   130 ITDRSLYALAHGCPDLTKLNLSGCTSFSDTAIAYLTRFCRKLKVLNLCGCVKAVTDNALE 189

Query:   150 LIADNYQELESLNL 163
              I +N  +++SLNL
Sbjct:   190 AIGNNCNQMQSLNL 203

GO:0005737 "cytoplasm" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0019005 "SCF ubiquitin ligase complex" evidence=IDA;IPI

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA;IPI

GO:0005634 "nucleus" evidence=IDA

GO:0010311 "lateral root formation" evidence=IMP

GO:0051781 "positive regulation of cell division" evidence=IMP

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0071365 "cellular response to auxin stimulus" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

WB|WBGene00015350 C02F5.7 [Caenorhabditis elegans (taxid:6239)]

 Score = 166 (63.5 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 34/108 (31%), Positives = 60/108 (55%)

Query:    57 FAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVR 116
             F +D++   +E L  +C G L++L   +L GC+ + D  +   +S CP L+  S+Y   R
Sbjct:   105 FQRDVKTAVVENLARRCGGFLKEL---SLKGCENVHDSALRTFTSRCPNLEHLSLYRCKR 161

Query:   117 VTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLT 164
             VTD   ++L + C  +  LNL  C ++ D++++ I D    L  LN++
Sbjct:   162 VTDASCENLGRYCHKLNYLNLENCSSITDRAMKYIGDGCPNLSYLNIS 209

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

DICTYBASE|DDB_G0287415 DDB_G0287415 "SCF E3 ubiquitin ligase complex F-box protein GRR1" [Dictyostelium discoideum (taxid:44689)]

 Score = 163 (62.4 bits), Expect = 3.7e-10, P = 3.7e-10
 Identities = 38/93 (40%), Positives = 56/93 (60%)

Query:    69 LKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKN 128
             L +K +  L  L+SLNLNGCQ+I++  +  IS++C  L+   +    RV D GI  LV  
Sbjct:   244 LFSKQISRLNQLKSLNLNGCQQITNDNLCKISNSCKHLEEIHLNGCNRVDDQGIVDLVSK 303

Query:   129 CKHIIDLNLSGCKNLLDKSLQLIADNYQELESL 161
             CK I  L++SG   L D+S+ +I    Q+L+SL
Sbjct:   304 CKKIKILSMSGLNLLTDRSMTMICQKLQDLQSL 336

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|E6ZHJ8 fbxl15 "F-box/LRR-repeat protein 15" [Dicentrarchus labrax (taxid:13489)]

 Score = 157 (60.3 bits), Expect = 4.8e-10, P = 4.8e-10
 Identities = 33/136 (24%), Positives = 73/136 (53%)

Query:    49 HVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKV 108
             H++ + L   + ++   L  L   C G    L+S++L  C+++ D  I  ++  C +L+ 
Sbjct:   134 HLQHLGLAHCEWVDSLSLRSLADHCGG----LQSIDLTACRQLKDDAICYLAKKCLKLRS 189

Query:   109 FSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVN 168
              S+  N  +TD  ++ + KNC+ +  L+L+GC  + ++S++ +A+   +L+SL +    N
Sbjct:   190 LSLAVNANITDESVEEVAKNCRGLEQLDLTGCLRVRNQSIRTLAEYCPKLQSLKVNHCHN 249

Query:   169 MILLGLFYIWSNNILL 184
             +    L  +   N+++
Sbjct:   250 VTESSLDPLRKRNVVI 265

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0009953 "dorsal/ventral pattern formation" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0030282 "bone mineralization" evidence=ISS

GO:0030513 "positive regulation of BMP signaling pathway" evidence=ISS

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

UNIPROTKB|A6H779 FBXL2 "F-box/LRR-repeat protein 2" [Bos taurus (taxid:9913)]

 Score = 159 (61.0 bits), Expect = 5.8e-10, P = 5.8e-10
 Identities = 48/158 (30%), Positives = 75/158 (47%)

Query:    24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESL 83
             K +DL    +  N  +  +S    RH+  +NL +   I    +E L   C G    L +L
Sbjct:   133 KHLDLTSCVSITNSSLKGIS-EGCRHLEYLNLSWCDQITKDGVEALVRGCRG----LRAL 187

Query:    84 NLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNL 143
              L GC ++ D+ ++ I + C EL   ++    RVTD G+  L + C  +  L LSGC +L
Sbjct:   188 LLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRVTDDGVVQLCRGCPRLQALCLSGCGSL 247

Query:   144 LDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNN 181
              D SL  +A N   L+ L   R  ++   G F + + N
Sbjct:   248 TDASLTALALNCPRLQILEAARCSHLTDAG-FTLLARN 284

GO:0016020 "membrane" evidence=ISS

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

UNIPROTKB|F1PWK1 FBXL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 158 (60.7 bits), Expect = 8.3e-10, P = 8.3e-10
 Identities = 46/158 (29%), Positives = 76/158 (48%)

Query:    24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESL 83
             K +DL    +  N  +  +S    R++  +NL +   I    +E L   C G    L++L
Sbjct:   132 KHLDLTSCVSITNSSLKGIS-EGCRNLEYLNLSWCDQITKDGIEALVRGCRG----LKAL 186

Query:    84 NLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNL 143
              L GC ++ D+ ++ I + C EL   ++    R+TD G+  + + C  +  L LSGC NL
Sbjct:   187 LLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNL 246

Query:   144 LDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNN 181
              D SL  +A N   L+ L   R  ++   G F + + N
Sbjct:   247 TDASLTALALNCPRLQILEAARCSHLTDAG-FTLLARN 283

GO:0016020 "membrane" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

TAIR|locus:2149805 AT5G01720 "AT5G01720" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 8.8e-10, P = 8.8e-10
 Identities = 31/89 (34%), Positives = 50/89 (56%)

Query:    60 DIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTD 119
             D+ D  ++    K + S   L SL L  C  I+DKG+  I   C  L+   +Y +V +TD
Sbjct:   413 DLTDNEIDDEGLKSISSCLSLSSLKLGICLNITDKGLSYIGMGCSNLRELDLYRSVGITD 472

Query:   120 IGIQHLVKNCKHIIDLNLSGCKNLLDKSL 148
             +GI  + + C H+  +N+S C+++ DKSL
Sbjct:   473 VGISTIAQGCIHLETINISYCQDITDKSL 501

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS;TAS

GO:0009407 "toxin catabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	240
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	1e-11
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	3e-09
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	0.002
smart00367	26	smart00367, LRR_CC, Leucine-rich repeat - CC (cyst	0.004

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 3/93 (3%)

Query: 74  LGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHII 133
           L +   L+ L L G + I D+G+  ++ +CP L+V  +     +TD GI  L  NC  + 
Sbjct: 48  LSNCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRACENITDSGIVALATNCPKLQ 107

Query: 134 DLNLS---GCKNLLDKSLQLIADNYQELESLNL 163
            +NL        + D SL  +  N   L+++  
Sbjct: 108 TINLGRHRNGHLITDVSLSALGKNCTFLQTVGF 140

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 55.0 bits (133), Expect = 3e-09
 Identities = 33/126 (26%), Positives = 66/126 (52%), Gaps = 9/126 (7%)

Query: 48  RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELK 107
             ++++ L  ++ I+D  L  L   C      L+ L+L  C+ I+D GI  +++ CP+L+
Sbjct: 52  NKLKKLILPGSKLIDDEGLIALAQSCPN----LQVLDLRACENITDSGIVALATNCPKLQ 107

Query: 108 VFSIYWNVR---VTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSL-QLIADNYQELESLNL 163
             ++  +     +TD+ +  L KNC  +  +  +GC ++ DK + +L +   + LE L+L
Sbjct: 108 TINLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGC-DVTDKGVWELASGCSKSLERLSL 166

Query: 164 TRYVNM 169
               N+
Sbjct: 167 NNCRNL 172

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%)

Query: 60  DIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII--SSTCPELKVFSIYWNVRV 117
           D+ D+ +  L + C    + LE L+LN C+ ++D+ I  I  S+  P L V        +
Sbjct: 144 DVTDKGVWELASGCS---KSLERLSLNNCRNLTDQSIPAILASNYFPNLSVLEFRGCPLI 200

Query: 118 TD 119
           TD
Sbjct: 201 TD 202

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|197685 smart00367, LRR_CC, Leucine-rich repeat - CC (cysteine-containing) subfamily

 Score = 33.5 bits (78), Expect = 0.004
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 103 CPELKVFSIYWNVRVTDIGIQHLVKN 128
           CP L+   +     +TD G+Q L K 
Sbjct: 1   CPNLRELDLSGCTNITDEGLQALAKG 26

Length = 26

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	240
KOG4341	483	consensus F-box protein containing LRR [General fu	99.86
KOG4341	483	consensus F-box protein containing LRR [General fu	99.79
KOG1947	482	consensus Leucine rich repeat proteins, some prote	99.65
KOG1947	482	consensus Leucine rich repeat proteins, some prote	99.64
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.54
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.53
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.52
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.45
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.14
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.96
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.76
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.69
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.68
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.56
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.56
KOG3864	221	consensus Uncharacterized conserved protein [Funct	98.55
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.52
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.47
KOG3864	221	consensus Uncharacterized conserved protein [Funct	98.28
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.27
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.22
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.12
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.06
KOG4308	478	consensus LRR-containing protein [Function unknown	98.01
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.9
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.88
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.8
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	97.66
KOG4308	478	consensus LRR-containing protein [Function unknown	97.65
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.4
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	97.18
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.08
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	96.9
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	96.84
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.79
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	96.78
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.69
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.49
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.44
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.34
KOG4237	498	consensus Extracellular matrix protein slit, conta	96.3
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	96.25
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.23
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.2
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	96.04
PLN03150	623	hypothetical protein; Provisional	95.94
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	95.87
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	95.83
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.79
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	95.78
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	95.58
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	95.56
PLN03150	623	hypothetical protein; Provisional	95.55
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.45
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	95.41
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.65
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.55
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	93.88
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	92.3
KOG0617	264	consensus Ras suppressor protein (contains leucine	92.12
KOG0472	565	consensus Leucine-rich repeat protein [Function un	91.3
PRK15386	426	type III secretion protein GogB; Provisional	91.21
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	90.81
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	88.4
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	86.02
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	85.86
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	84.63
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	84.59
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	84.57
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	82.56
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	82.1

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.86  E-value=9.4e-23  Score=169.40  Aligned_cols=210  Identities=19%  Similarity=0.309  Sum_probs=153.1

Q ss_pred             CcCeEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHH
Q 026356           21 TVPKVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS  100 (240)
Q Consensus        21 ~~~~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~  100 (240)
                      .|++-|.++||..+.+..+..+. .+||++++|++.+|.+++|..+..+++.|    ++|++|++-.|+.+|+..++.++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~-~~CpnIehL~l~gc~~iTd~s~~sla~~C----~~l~~l~L~~c~~iT~~~Lk~la  212 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFA-SNCPNIEHLALYGCKKITDSSLLSLARYC----RKLRHLNLHSCSSITDVSLKYLA  212 (483)
T ss_pred             cccccccccccccCCcchhhHHh-hhCCchhhhhhhcceeccHHHHHHHHHhc----chhhhhhhcccchhHHHHHHHHH
Confidence            46777999999999888888775 59999999999999999999999999988    99999999999999999999999


Q ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEecc--------------------------CCCCCCHHHHHHHHHh
Q 026356          101 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLS--------------------------GCKNLLDKSLQLIADN  154 (240)
Q Consensus       101 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~--------------------------~c~~ltd~~l~~l~~~  154 (240)
                      ..|++|+.++++||+.+++.+++.+.+++..++.+...                          +|..+||+++..++.+
T Consensus       213 ~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~  292 (483)
T KOG4341|consen  213 EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG  292 (483)
T ss_pred             HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence            99999999999999998888887777766655555333                          4444555555555545


Q ss_pred             CCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHH---------------HhcCCccceeecccCCCCCchhHHHHHHHhh
Q 026356          155 YQELESLNLTRYVNMILLGLFYIWSNNILLMSEF---------------IYHGIRFFQAVQINSSNGGDHLAFAYIIETN  219 (240)
Q Consensus       155 ~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l---------------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~  219 (240)
                      |..|+.++.++|..++|..+..+..+|+. ++.+               ..++|+.|+.+++.-+....+..+....  .
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~-L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls--~  369 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHN-LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLS--R  369 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCc-eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhc--c
Confidence            55555555555555555555555555443 2222               2234445666666433333332444444  6


Q ss_pred             cccccchhhhhhhhhhhcc
Q 026356          220 TYKHGKEKHIIETIKTGQQ  238 (240)
Q Consensus       220 ~~~~L~~L~l~~c~~~~d~  238 (240)
                      +|+.|++|++..|..|+|-
T Consensus       370 ~C~~lr~lslshce~itD~  388 (483)
T KOG4341|consen  370 NCPRLRVLSLSHCELITDE  388 (483)
T ss_pred             CCchhccCChhhhhhhhhh
Confidence            7888888888888887764

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.79  E-value=5.2e-20  Score=153.17  Aligned_cols=208  Identities=18%  Similarity=0.274  Sum_probs=167.2

Q ss_pred             EeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCC
Q 026356           26 IDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPE  105 (240)
Q Consensus        26 L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~  105 (240)
                      |++.+|..+++..+..++. .|+.|++|++..|.++++..++.++++|    ++|++++++-|+.+++.+++.+.+.|..
T Consensus       169 L~l~gc~~iTd~s~~sla~-~C~~l~~l~L~~c~~iT~~~Lk~la~gC----~kL~~lNlSwc~qi~~~gv~~~~rG~~~  243 (483)
T KOG4341|consen  169 LALYGCKKITDSSLLSLAR-YCRKLRHLNLHSCSSITDVSLKYLAEGC----RKLKYLNLSWCPQISGNGVQALQRGCKE  243 (483)
T ss_pred             hhhhcceeccHHHHHHHHH-hcchhhhhhhcccchhHHHHHHHHHHhh----hhHHHhhhccCchhhcCcchHHhccchh
Confidence            7888899899999888874 8899999999999999999999999988    8888888888888887777666665554


Q ss_pred             CC--------------------------EEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCc
Q 026356          106 LK--------------------------VFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELE  159 (240)
Q Consensus       106 L~--------------------------~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~  159 (240)
                      ++                          ++++..|..+||.++..+...|.+|+.|+.++|..++|..+..|..++++|+
T Consensus       244 l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~  323 (483)
T KOG4341|consen  244 LEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQ  323 (483)
T ss_pred             hhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceE
Confidence            44                          4444456668888888888889999999999999999999999999999999


Q ss_pred             EEeccCCCCCCHHHHHHHHHhChhhhhHH---------------HhcCCccceeecccCC-CCCchhHHHHHHHh-hccc
Q 026356          160 SLNLTRYVNMILLGLFYIWSNNILLMSEF---------------IYHGIRFFQAVQINSS-NGGDHLAFAYIIET-NTYK  222 (240)
Q Consensus       160 ~L~l~~c~~it~~~~~~l~~~~~~~l~~l---------------~~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~-~~~~  222 (240)
                      .+.+..|.+++|.|+..++++|+. ++.+               ...+|+.|+.+.++-+ .++|. ++..+..+ .+..
T Consensus       324 ~l~l~~c~~fsd~~ft~l~rn~~~-Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~-gi~~l~~~~c~~~  401 (483)
T KOG4341|consen  324 VLELSGCQQFSDRGFTMLGRNCPH-LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE-GIRHLSSSSCSLE  401 (483)
T ss_pred             EEeccccchhhhhhhhhhhcCChh-hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhh-hhhhhhhcccccc
Confidence            999999999999999999999876 4432               2356777888888633 44444 55544422 3457


Q ss_pred             ccchhhhhhhhhhhcccC
Q 026356          223 HGKEKHIIETIKTGQQLL  240 (240)
Q Consensus       223 ~L~~L~l~~c~~~~d~~~  240 (240)
                      .|..+.+.+||.|.|++|
T Consensus       402 ~l~~lEL~n~p~i~d~~L  419 (483)
T KOG4341|consen  402 GLEVLELDNCPLITDATL  419 (483)
T ss_pred             ccceeeecCCCCchHHHH
Confidence            788899999999988764

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=99.65  E-value=7.2e-16  Score=136.22  Aligned_cols=181  Identities=24%  Similarity=0.335  Sum_probs=116.4

Q ss_pred             cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCC-CCCCcHHH--HHHHHhcCCCCCEEEecCCCCCCHHHH
Q 026356           46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNG-CQKISDKG--IEIISSTCPELKVFSIYWNVRVTDIGI  122 (240)
Q Consensus        46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~-c~~l~~~~--~~~l~~~~~~L~~L~l~~~~~l~~~~~  122 (240)
                      .+++|+.|.+..|..+++.++..++..+    ++|+.|++++ |..++..+  ...+...|++|+.|+++++..++|.++
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l  261 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKC----PNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL  261 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhC----chhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH
Confidence            4677777777777777777766666655    7777777776 33333332  334556677777777777756777777


Q ss_pred             HHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHH---HhcCCccceee
Q 026356          123 QHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEF---IYHGIRFFQAV  199 (240)
Q Consensus       123 ~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l---~~~~~~~L~~l  199 (240)
                      ..++..|++|+.|.+.+|..+||.++..++..|++|++|++++|..++|.++..+..+|+. ++.+   ...+|+.++.+
T Consensus       262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~-l~~l~~~~~~~c~~l~~~  340 (482)
T KOG1947|consen  262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPN-LRELKLLSLNGCPSLTDL  340 (482)
T ss_pred             HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcc-hhhhhhhhcCCCccHHHH
Confidence            7777777777777777776677777777777777777777777777777777777666443 3332   22334445555


Q ss_pred             cccCCCCCc-hhHHHHHHHhhcccccchhhhhhhh
Q 026356          200 QINSSNGGD-HLAFAYIIETNTYKHGKEKHIIETI  233 (240)
Q Consensus       200 ~l~~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~c~  233 (240)
                      .+....... ........  ..|+.++.+.+.+|.
T Consensus       341 ~l~~~~~~~~d~~~~~~~--~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  341 SLSGLLTLTSDDLAELIL--RSCPKLTDLSLSYCG  373 (482)
T ss_pred             HHHHhhccCchhHhHHHH--hcCCCcchhhhhhhh
Confidence            553332222 11233333  567777777777666

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=99.64  E-value=1.6e-15  Score=133.92  Aligned_cols=192  Identities=22%  Similarity=0.345  Sum_probs=156.0

Q ss_pred             EEeccCCCCCChHHHHHhhhhcCCCCceEeccC-CCCCcHHH--HHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHh
Q 026356           25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEF-AQDIEDRH--LELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS  101 (240)
Q Consensus        25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~-c~~i~~~~--~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~  101 (240)
                      .+.+..|..+.+..+.++. ..++.|+.|++++ |..+...+  ...+...    +++|++|++++|..++|.+++.++.
T Consensus       192 ~l~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~----~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  192 RLSLSGCSKITDDSLDALA-LKCPNLEELDLSGCCLLITLSPLLLLLLLSI----CRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             HhhhcccccCChhhHHHHH-hhCchhheecccCcccccccchhHhhhhhhh----cCCcCccchhhhhccCchhHHHHHh
Confidence            3888888888877766665 4899999999998 44444444  3344444    4999999999997799999999999


Q ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccC---CCCCCHHHHHHHH
Q 026356          102 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR---YVNMILLGLFYIW  178 (240)
Q Consensus       102 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~---c~~it~~~~~~l~  178 (240)
                      .|++|++|.+.+|..+++.++..+++.|++|++|++++|..++|.++..+..+|++|+.|.+..   |..+++.++..+.
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~  346 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL  346 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh
Confidence            9999999999999889999999999999999999999999999999999988899888766554   4558888887776


Q ss_pred             HhChhhhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhccccc
Q 026356          179 SNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHG  224 (240)
Q Consensus       179 ~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L  224 (240)
                      ......+..+...+|+.++.+.+.++...+. +.....  .+||.|
T Consensus       347 ~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~l--~gc~~l  389 (482)
T KOG1947|consen  347 TLTSDDLAELILRSCPKLTDLSLSYCGISDL-GLELSL--RGCPNL  389 (482)
T ss_pred             ccCchhHhHHHHhcCCCcchhhhhhhhccCc-chHHHh--cCCccc
Confidence            6442126777889999999999987775555 445555  788888

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=1.3e-14  Score=116.82  Aligned_cols=166  Identities=18%  Similarity=0.227  Sum_probs=117.4

Q ss_pred             CCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHH
Q 026356           48 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK  127 (240)
Q Consensus        48 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~  127 (240)
                      ..|++||++. ..|+...+..+...|    .+|+.|.+-| ..+.|..+..+++ -.+|++|++++|..++..+++.+.+
T Consensus       185 sRlq~lDLS~-s~it~stl~~iLs~C----~kLk~lSlEg-~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~  257 (419)
T KOG2120|consen  185 SRLQHLDLSN-SVITVSTLHGILSQC----SKLKNLSLEG-LRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLS  257 (419)
T ss_pred             hhhHHhhcch-hheeHHHHHHHHHHH----Hhhhhccccc-cccCcHHHHHHhc-cccceeeccccccccchhHHHHHHH
Confidence            3588888887 678888888887776    7888888888 5888877777776 6778888888888888888888888


Q ss_pred             cCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCC-CHHHHHHHHHhChhhhhHHHhcCCccceeeccc-CCC
Q 026356          128 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNM-ILLGLFYIWSNNILLMSEFIYHGIRFFQAVQIN-SSN  205 (240)
Q Consensus       128 ~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~i-t~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~-~~~  205 (240)
                      +|+.|.+|+++.|...++..-..++.-.++|+.|++++|... .+.-+..            ....|++|..+|++ +..
T Consensus       258 scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~t------------L~~rcp~l~~LDLSD~v~  325 (419)
T KOG2120|consen  258 SCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLST------------LVRRCPNLVHLDLSDSVM  325 (419)
T ss_pred             hhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHH------------HHHhCCceeeeccccccc
Confidence            888888888888854444433334444677888888887331 2221222            23557788888885 444


Q ss_pred             CCchhHHHHHHHhhcccccchhhhhhhhhhh
Q 026356          206 GGDHLAFAYIIETNTYKHGKEKHIIETIKTG  236 (240)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~  236 (240)
                      +.+. -+..+   ..++.|+.|++++||.|.
T Consensus       326 l~~~-~~~~~---~kf~~L~~lSlsRCY~i~  352 (419)
T KOG2120|consen  326 LKND-CFQEF---FKFNYLQHLSLSRCYDII  352 (419)
T ss_pred             cCch-HHHHH---HhcchheeeehhhhcCCC
Confidence            5443 33333   478899999999998663

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.53  E-value=9.4e-13  Score=110.51  Aligned_cols=192  Identities=20%  Similarity=0.195  Sum_probs=122.8

Q ss_pred             EeccCCCCCC--hHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCC-CCccEEecCCCCCCcHHHHHHHH--
Q 026356           26 IDLREMNNAG--NRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSL-QDLESLNLNGCQKISDKGIEIIS--  100 (240)
Q Consensus        26 L~l~~~~~~~--~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~l~--  100 (240)
                      |++++|....  ...+..+.. . ++|++|++++| .+++.++..+...+ ..+ ++|+.|++++| .++..+...+.  
T Consensus        86 L~l~~~~~~~~~~~~~~~l~~-~-~~L~~L~ls~~-~~~~~~~~~l~~~l-~~~~~~L~~L~L~~n-~l~~~~~~~~~~~  160 (319)
T cd00116          86 LDLSDNALGPDGCGVLESLLR-S-SSLQELKLNNN-GLGDRGLRLLAKGL-KDLPPALEKLVLGRN-RLEGASCEALAKA  160 (319)
T ss_pred             EEccCCCCChhHHHHHHHHhc-c-CcccEEEeeCC-ccchHHHHHHHHHH-HhCCCCceEEEcCCC-cCCchHHHHHHHH
Confidence            8888887532  222222221 2 66899999885 57777777766654 334 78888999886 66654444333  


Q ss_pred             -hcCCCCCEEEecCCCCCCHHHHHHHHHcC---CcCCEEeccCCCCCCHHHHHHHHH---hCCCCcEEeccCCCCCCHHH
Q 026356          101 -STCPELKVFSIYWNVRVTDIGIQHLVKNC---KHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTRYVNMILLG  173 (240)
Q Consensus       101 -~~~~~L~~L~l~~~~~l~~~~~~~l~~~~---~~L~~L~l~~c~~ltd~~l~~l~~---~~~~L~~L~l~~c~~it~~~  173 (240)
                       ..+++|++|++++| .+++.++..+...+   ++|++|++++| .+++.++..+..   .+++|+.|++++| .+++.+
T Consensus       161 ~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~  237 (319)
T cd00116         161 LRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN-NLTDAG  237 (319)
T ss_pred             HHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-cCchHH
Confidence             34677888888877 68777776665433   48888888888 787776655443   4678888888885 678877


Q ss_pred             HHHHHHhChhhhhHHHhcCCccceeecccCCCCCchhHHHHH-HHhhcccccchhhhhhhhh
Q 026356          174 LFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYI-IETNTYKHGKEKHIIETIK  234 (240)
Q Consensus       174 ~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~c~~  234 (240)
                      +..++....        .+.+.|+.++++++.+.+.. ...+ .....+++|+.+++.++.-
T Consensus       238 ~~~l~~~~~--------~~~~~L~~L~l~~n~i~~~~-~~~l~~~~~~~~~L~~l~l~~N~l  290 (319)
T cd00116         238 AAALASALL--------SPNISLLTLSLSCNDITDDG-AKDLAEVLAEKESLLELDLRGNKF  290 (319)
T ss_pred             HHHHHHHHh--------ccCCCceEEEccCCCCCcHH-HHHHHHHHhcCCCccEEECCCCCC
Confidence            766654411        23455677777777666542 2222 1114456677777666543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.52  E-value=1.2e-12  Score=109.77  Aligned_cols=125  Identities=26%  Similarity=0.266  Sum_probs=52.6

Q ss_pred             CCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhc---CCCCCEEEecCCCCCCHHHHHH
Q 026356           48 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST---CPELKVFSIYWNVRVTDIGIQH  124 (240)
Q Consensus        48 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~---~~~L~~L~l~~~~~l~~~~~~~  124 (240)
                      ++|+.|++++| .++..+...+...+ ..+++|++|++++| .+++.++..+...   .++|++|++++| .+++.+...
T Consensus       137 ~~L~~L~L~~n-~l~~~~~~~~~~~~-~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~  212 (319)
T cd00116         137 PALEKLVLGRN-RLEGASCEALAKAL-RANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASA  212 (319)
T ss_pred             CCceEEEcCCC-cCCchHHHHHHHHH-HhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHH
Confidence            44555555543 24433333333222 22244555555553 4444443333321   234555555544 344443333


Q ss_pred             HH---HcCCcCCEEeccCCCCCCHHHHHHHHHhC----CCCcEEeccCCCCCCHHHHHHHH
Q 026356          125 LV---KNCKHIIDLNLSGCKNLLDKSLQLIADNY----QELESLNLTRYVNMILLGLFYIW  178 (240)
Q Consensus       125 l~---~~~~~L~~L~l~~c~~ltd~~l~~l~~~~----~~L~~L~l~~c~~it~~~~~~l~  178 (240)
                      +.   ..+++|+.|++++| .+++.++..++..+    +.|++|++++| .+++.+...+.
T Consensus       213 l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~  271 (319)
T cd00116         213 LAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLA  271 (319)
T ss_pred             HHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHH
Confidence            22   23344555555554 44444444443332    34555555543 44444444333

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=3.3e-13  Score=108.77  Aligned_cols=188  Identities=16%  Similarity=0.255  Sum_probs=126.7

Q ss_pred             EeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCC
Q 026356           26 IDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPE  105 (240)
Q Consensus        26 L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~  105 (240)
                      +||+... ++...+..+ +++|..|+.|++.+ ..++|.-...++++     .+|+.|++++|+++|..+++.+...|+.
T Consensus       190 lDLS~s~-it~stl~~i-Ls~C~kLk~lSlEg-~~LdD~I~~~iAkN-----~~L~~lnlsm~sG~t~n~~~ll~~scs~  261 (419)
T KOG2120|consen  190 LDLSNSV-ITVSTLHGI-LSQCSKLKNLSLEG-LRLDDPIVNTIAKN-----SNLVRLNLSMCSGFTENALQLLLSSCSR  261 (419)
T ss_pred             hhcchhh-eeHHHHHHH-HHHHHhhhhccccc-cccCcHHHHHHhcc-----ccceeeccccccccchhHHHHHHHhhhh
Confidence            8887544 666666655 46999999999999 78999999988875     7899999999999999999999999999


Q ss_pred             CCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCC-CCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhCh-h
Q 026356          106 LKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGC-KNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNI-L  183 (240)
Q Consensus       106 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c-~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~-~  183 (240)
                      |.+|+++||...++..-..++.--++|..|+++|| .++.+..+..+++.||+|..||++.|..+++.-+..+.+-.. .
T Consensus       262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~  341 (419)
T KOG2120|consen  262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ  341 (419)
T ss_pred             HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence            99999999954444422223334457777777777 233445566666777777777777777777755544443211 0


Q ss_pred             h-----------hhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccc
Q 026356          184 L-----------MSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGK  225 (240)
Q Consensus       184 ~-----------l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~  225 (240)
                      .           -.-+.+...|.|..+++..+-...  .+..+.  ..+|+|+
T Consensus       342 ~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt--~mel~~--e~~~~lk  390 (419)
T KOG2120|consen  342 HLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDT--TMELLK--EMLSHLK  390 (419)
T ss_pred             eeehhhhcCCChHHeeeeccCcceEEEEeccccCch--HHHHHH--HhCcccc
Confidence            0           001233555667777665443322  233344  4556554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.14  E-value=4.8e-10  Score=92.27  Aligned_cols=194  Identities=13%  Similarity=0.155  Sum_probs=104.8

Q ss_pred             EeccCCCCCChHHHHHhh--hhcCCCCceEeccCCCCCcHHHHHHHHHHc--------cCCCCCccEEecCCCCCCcHHH
Q 026356           26 IDLREMNNAGNRLVAALS--IPRYRHVREINLEFAQDIEDRHLELLKTKC--------LGSLQDLESLNLNGCQKISDKG   95 (240)
Q Consensus        26 L~l~~~~~~~~~~l~~l~--~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~--------~~~~~~L~~L~l~~c~~l~~~~   95 (240)
                      +||+.|. ++.+++..+.  ++++.+|++|.+..| .++..+-..+++..        ...-++|+.+.... +.+.+.+
T Consensus        97 ldLSDNA-~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r-Nrlen~g  173 (382)
T KOG1909|consen   97 LDLSDNA-FGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR-NRLENGG  173 (382)
T ss_pred             eeccccc-cCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec-ccccccc
Confidence            6666665 3333333331  345666666666664 35555444433311        12235566666555 3444333


Q ss_pred             HH---HHHhcCCCCCEEEecCCCCCCHHHHHH---HHHcCCcCCEEeccCCCCCCHHHHHHHHH---hCCCCcEEeccCC
Q 026356           96 IE---IISSTCPELKVFSIYWNVRVTDIGIQH---LVKNCKHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTRY  166 (240)
Q Consensus        96 ~~---~l~~~~~~L~~L~l~~~~~l~~~~~~~---l~~~~~~L~~L~l~~c~~ltd~~l~~l~~---~~~~L~~L~l~~c  166 (240)
                      ..   ...+.+|.|+++.++++ .+...|+..   -...|++|+.|++.++ ..+..+-..++.   .+++|+.|++++|
T Consensus       174 a~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~El~l~dc  251 (382)
T KOG1909|consen  174 ATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLRELNLGDC  251 (382)
T ss_pred             HHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHHHHHHhcccchheeeccccc
Confidence            32   23335566677766655 444444422   2346677777777777 566655555554   3556677777776


Q ss_pred             CCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356          167 VNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  233 (240)
Q Consensus       167 ~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  233 (240)
                       .+.+.|..++...    +    -.+.|.|+.+.+.++.+....+......-..-|.|+.|++..|-
T Consensus       252 -ll~~~Ga~a~~~a----l----~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  252 -LLENEGAIAFVDA----L----KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             -ccccccHHHHHHH----H----hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence             5666666555543    1    13356677777777766655444444333446777777776554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.96  E-value=4.8e-09  Score=86.49  Aligned_cols=174  Identities=16%  Similarity=0.202  Sum_probs=113.2

Q ss_pred             cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHh------------cCCCCCEEEecC
Q 026356           46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS------------TCPELKVFSIYW  113 (240)
Q Consensus        46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~------------~~~~L~~L~l~~  113 (240)
                      .+|.|+.|+||. +-++..+++.+.... ..+..|++|.+++| ++...+-..++.            .-+.|+.+....
T Consensus        90 ~~~~L~~ldLSD-NA~G~~g~~~l~~ll-~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r  166 (382)
T KOG1909|consen   90 GCPKLQKLDLSD-NAFGPKGIRGLEELL-SSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR  166 (382)
T ss_pred             cCCceeEeeccc-cccCccchHHHHHHH-HhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence            455777777776 556666655555443 33577777777776 555544333222            234577777765


Q ss_pred             CCCCCHH---HHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHH---hCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhH
Q 026356          114 NVRVTDI---GIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTRYVNMILLGLFYIWSNNILLMSE  187 (240)
Q Consensus       114 ~~~l~~~---~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~---~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~  187 (240)
                      + .+.+.   .+....+.+|.|+.+.+.++ .|...++..++.   +||+|+.||+.. +-+|..|=.+++..       
T Consensus       167 N-rlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~Laka-------  236 (382)
T KOG1909|consen  167 N-RLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALAKA-------  236 (382)
T ss_pred             c-ccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHHHH-------
Confidence            5 44433   34445567788888888888 677766655443   588899999988 56777777777653       


Q ss_pred             HHhcCCccceeecccCCCCCchhHHHHHHH-hhcccccchhhhhhhhh
Q 026356          188 FIYHGIRFFQAVQINSSNGGDHLAFAYIIE-TNTYKHGKEKHIIETIK  234 (240)
Q Consensus       188 l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~c~~  234 (240)
                        +...++|+.++++++.+.+......+-. ....|+|+.|.+.+|.-
T Consensus       237 --L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI  282 (382)
T KOG1909|consen  237 --LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI  282 (382)
T ss_pred             --hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence              3446788899998888887744333321 14578999998877653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=1.3e-09  Score=92.19  Aligned_cols=185  Identities=19%  Similarity=0.137  Sum_probs=83.2

Q ss_pred             EeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCC
Q 026356           26 IDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPE  105 (240)
Q Consensus        26 L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~  105 (240)
                      |||+.+=.-++..+..+. .++|+|+.|+++. +.+....-...-.    -+++|+.|.+++| +++..-+..+...+|+
T Consensus       151 LdLS~NL~~nw~~v~~i~-eqLp~Le~LNls~-Nrl~~~~~s~~~~----~l~~lK~L~l~~C-Gls~k~V~~~~~~fPs  223 (505)
T KOG3207|consen  151 LDLSRNLFHNWFPVLKIA-EQLPSLENLNLSS-NRLSNFISSNTTL----LLSHLKQLVLNSC-GLSWKDVQWILLTFPS  223 (505)
T ss_pred             ecchhhhHHhHHHHHHHH-Hhcccchhccccc-ccccCCccccchh----hhhhhheEEeccC-CCCHHHHHHHHHhCCc
Confidence            555555544555555443 3556666666655 2221110000000    1255566666665 5555555555555666


Q ss_pred             CCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhh
Q 026356          106 LKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLM  185 (240)
Q Consensus       106 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l  185 (240)
                      |+.|++.++..+.-.....  .....|++|+++++..++-. .......+|.|+.|+++.| .+++-........+    
T Consensus       224 l~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~li~~~-~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~----  295 (505)
T KOG3207|consen  224 LEVLYLEANEIILIKATST--KILQTLQELDLSNNNLIDFD-QGYKVGTLPGLNQLNLSST-GIASIAEPDVESLD----  295 (505)
T ss_pred             HHHhhhhcccccceecchh--hhhhHHhhccccCCcccccc-cccccccccchhhhhcccc-CcchhcCCCccchh----
Confidence            6666665542211111100  11234556666655333322 1122223555666555553 33332111110001    


Q ss_pred             hHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhh
Q 026356          186 SEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIE  231 (240)
Q Consensus       186 ~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  231 (240)
                         ..+..+.|+.|+++-+.+.+=-.+...   ...++|+.|.+..
T Consensus       296 ---kt~~f~kL~~L~i~~N~I~~w~sl~~l---~~l~nlk~l~~~~  335 (505)
T KOG3207|consen  296 ---KTHTFPKLEYLNISENNIRDWRSLNHL---RTLENLKHLRITL  335 (505)
T ss_pred             ---hhcccccceeeecccCccccccccchh---hccchhhhhhccc
Confidence               124556788888877766332122222   3456666666543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=7.7e-09  Score=87.60  Aligned_cols=114  Identities=22%  Similarity=0.234  Sum_probs=87.0

Q ss_pred             hhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCc-HHHHHHHHhcCCCCCEEEecCCCCC--CHH
Q 026356           44 IPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKIS-DKGIEIISSTCPELKVFSIYWNVRV--TDI  120 (240)
Q Consensus        44 ~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~-~~~~~~l~~~~~~L~~L~l~~~~~l--~~~  120 (240)
                      .+++..|+...+..| .+.+.+.+..+..|    ++++.|++|+ +-++ -..+..++..+|+|+.|+++.+.-.  +++
T Consensus       117 Qsn~kkL~~IsLdn~-~V~~~~~~~~~k~~----~~v~~LdLS~-NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s  190 (505)
T KOG3207|consen  117 QSNLKKLREISLDNY-RVEDAGIEEYSKIL----PNVRDLDLSR-NLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS  190 (505)
T ss_pred             hhhHHhhhheeecCc-cccccchhhhhhhC----Ccceeecchh-hhHHhHHHHHHHHHhcccchhcccccccccCCccc
Confidence            357888999999985 58887776665555    9999999998 3433 3456788888999999999876211  111


Q ss_pred             HHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCC
Q 026356          121 GIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYV  167 (240)
Q Consensus       121 ~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~  167 (240)
                      ...   ...++|+.|.+++| +++...+..+...+|+|+.|.+.++.
T Consensus       191 ~~~---~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~  233 (505)
T KOG3207|consen  191 NTT---LLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANE  233 (505)
T ss_pred             cch---hhhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhccc
Confidence            111   15578999999999 89998888888889999999999853

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.68  E-value=9.5e-08  Score=87.83  Aligned_cols=139  Identities=15%  Similarity=0.211  Sum_probs=73.9

Q ss_pred             CCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCH------------
Q 026356           78 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLD------------  145 (240)
Q Consensus        78 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd------------  145 (240)
                      .+|++|+++|-..+...-...++..+|+|++|.+.+- .+....+..+..++|+|.+||+|++ ++++            
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGT-NISNLSGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCC-CccCcHHHhccccHHH
Confidence            4556666655333333334455555566666666543 3333335555555556666666655 4443            


Q ss_pred             -----------HHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCchhHHHH
Q 026356          146 -----------KSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAY  214 (240)
Q Consensus       146 -----------~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~  214 (240)
                                 ..+..|+ ++++|+.||+|.-....+.-.....-.        ....+|+|+.+|.+....... .+..
T Consensus       200 L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYle--------c~~~LpeLrfLDcSgTdi~~~-~le~  269 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLE--------CGMVLPELRFLDCSGTDINEE-ILEE  269 (699)
T ss_pred             HhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHH--------hcccCccccEEecCCcchhHH-HHHH
Confidence                       2233333 366788888877444444311111111        335577888888887766666 4555


Q ss_pred             HHHhhcccccchhhhh
Q 026356          215 IIETNTYKHGKEKHII  230 (240)
Q Consensus       215 ~~~~~~~~~L~~L~l~  230 (240)
                      +.  +.-|+|+..-.-
T Consensus       270 ll--~sH~~L~~i~~~  283 (699)
T KOG3665|consen  270 LL--NSHPNLQQIAAL  283 (699)
T ss_pred             HH--HhCccHhhhhhh
Confidence            55  455666665544

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.56  E-value=5.3e-08  Score=93.67  Aligned_cols=40  Identities=5%  Similarity=0.015  Sum_probs=22.8

Q ss_pred             cCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhh
Q 026356          191 HGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK  234 (240)
Q Consensus       191 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  234 (240)
                      .+++.|+.++++.+.+....  ...+  ..+++|+.|++.+|..
T Consensus       305 ~~l~~L~~L~l~~n~~~~~~--~~~~--~~l~~L~~L~L~~n~l  344 (968)
T PLN00113        305 IQLQNLEILHLFSNNFTGKI--PVAL--TSLPRLQVLQLWSNKF  344 (968)
T ss_pred             cCCCCCcEEECCCCccCCcC--ChhH--hcCCCCCEEECcCCCC
Confidence            44556666666665554431  1222  4567777777776654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.56  E-value=8.9e-08  Score=92.14  Aligned_cols=41  Identities=7%  Similarity=-0.023  Sum_probs=27.3

Q ss_pred             hcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhh
Q 026356          190 YHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK  234 (240)
Q Consensus       190 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  234 (240)
                      +.+++.|+.++++.+.+....  ...+  ..+++|+.|++.++..
T Consensus       328 ~~~l~~L~~L~L~~n~l~~~~--p~~l--~~~~~L~~L~Ls~n~l  368 (968)
T PLN00113        328 LTSLPRLQVLQLWSNKFSGEI--PKNL--GKHNNLTVLDLSTNNL  368 (968)
T ss_pred             HhcCCCCCEEECcCCCCcCcC--ChHH--hCCCCCcEEECCCCee
Confidence            355677888888877765442  2223  5678888888877653

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.55  E-value=8e-08  Score=73.85  Aligned_cols=90  Identities=21%  Similarity=0.305  Sum_probs=77.7

Q ss_pred             CccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCC
Q 026356           79 DLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQEL  158 (240)
Q Consensus        79 ~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L  158 (240)
                      .++.++-++| .|...|++++-. ++.++.|.+.+|..+.|.++..+....++|+.|++++|+.||+.++..|.+ +++|
T Consensus       102 ~IeaVDAsds-~I~~eGle~L~~-l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknL  178 (221)
T KOG3864|consen  102 KIEAVDASDS-SIMYEGLEHLRD-LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNL  178 (221)
T ss_pred             eEEEEecCCc-hHHHHHHHHHhc-cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhh
Confidence            4788888885 899999998875 899999999999999999999999888899999999999999999998865 8899


Q ss_pred             cEEeccCCCCCCH
Q 026356          159 ESLNLTRYVNMIL  171 (240)
Q Consensus       159 ~~L~l~~c~~it~  171 (240)
                      +.|.+.+-+.+..
T Consensus       179 r~L~l~~l~~v~~  191 (221)
T KOG3864|consen  179 RRLHLYDLPYVAN  191 (221)
T ss_pred             HHHHhcCchhhhc
Confidence            9999887544443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.52  E-value=9.3e-07  Score=81.42  Aligned_cols=152  Identities=18%  Similarity=0.165  Sum_probs=106.1

Q ss_pred             EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCC
Q 026356           25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCP  104 (240)
Q Consensus        25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~  104 (240)
                      .|+++|...+.......++ ..+|+|+.|.+++ ..+..+.+..+..++    |+|.+||+|++ ++++-  .-++ +++
T Consensus       126 ~LdI~G~~~~s~~W~~kig-~~LPsL~sL~i~~-~~~~~~dF~~lc~sF----pNL~sLDIS~T-nI~nl--~GIS-~Lk  195 (699)
T KOG3665|consen  126 HLDISGSELFSNGWPKKIG-TMLPSLRSLVISG-RQFDNDDFSQLCASF----PNLRSLDISGT-NISNL--SGIS-RLK  195 (699)
T ss_pred             hcCccccchhhccHHHHHh-hhCcccceEEecC-ceecchhHHHHhhcc----CccceeecCCC-CccCc--HHHh-ccc
Confidence            3889988877777777776 4899999999998 556666676666555    99999999995 66653  2233 488


Q ss_pred             CCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHH--HHHH--HhCCCCcEEeccCCCCCCHHHHHHHHHh
Q 026356          105 ELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSL--QLIA--DNYQELESLNLTRYVNMILLGLFYIWSN  180 (240)
Q Consensus       105 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l--~~l~--~~~~~L~~L~l~~c~~it~~~~~~l~~~  180 (240)
                      +|+.|.+-+-.--+...+..+. .+++|+.||+|.-...++.-+  ..+.  ..+|+|+.||.++ +.+++.-+..+-..
T Consensus       196 nLq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg-Tdi~~~~le~ll~s  273 (699)
T KOG3665|consen  196 NLQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG-TDINEEILEELLNS  273 (699)
T ss_pred             cHHHHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC-cchhHHHHHHHHHh
Confidence            8888888755323335555555 678999999998755444311  1121  1488999999998 68888888777765


Q ss_pred             ChhhhhHHH
Q 026356          181 NILLMSEFI  189 (240)
Q Consensus       181 ~~~~l~~l~  189 (240)
                      -+. ++.+.
T Consensus       274 H~~-L~~i~  281 (699)
T KOG3665|consen  274 HPN-LQQIA  281 (699)
T ss_pred             Ccc-Hhhhh
Confidence            444 55443

>PLN03210 Resistant to P

Probab=98.47  E-value=1.1e-07  Score=92.85  Aligned_cols=16  Identities=6%  Similarity=0.137  Sum_probs=9.7

Q ss_pred             cCCCCceEeccCCCCC
Q 026356           46 RYRHVREINLEFAQDI   61 (240)
Q Consensus        46 ~~~~L~~L~l~~c~~i   61 (240)
                      .+++|+.|++++|..+
T Consensus       655 ~l~~Le~L~L~~c~~L  670 (1153)
T PLN03210        655 MATNLETLKLSDCSSL  670 (1153)
T ss_pred             cCCcccEEEecCCCCc
Confidence            4566666666666544

syringae 6; Provisional

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.28  E-value=9.6e-07  Score=67.99  Aligned_cols=87  Identities=24%  Similarity=0.362  Sum_probs=45.4

Q ss_pred             CceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcC
Q 026356           50 VREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNC  129 (240)
Q Consensus        50 L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  129 (240)
                      ++.++-+. ..|...|++.+-.     ++.|+.|.+..|..+.|.+++-++.-.++|+.|+|++|+.||+.|+.-+. .+
T Consensus       103 IeaVDAsd-s~I~~eGle~L~~-----l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~l  175 (221)
T KOG3864|consen  103 IEAVDASD-SSIMYEGLEHLRD-----LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KL  175 (221)
T ss_pred             EEEEecCC-chHHHHHHHHHhc-----cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-Hh
Confidence            34444444 2355555554422     35555555555555555555555555555555555555555555555554 34


Q ss_pred             CcCCEEeccCCCCC
Q 026356          130 KHIIDLNLSGCKNL  143 (240)
Q Consensus       130 ~~L~~L~l~~c~~l  143 (240)
                      ++|+.|.+.+-+.+
T Consensus       176 knLr~L~l~~l~~v  189 (221)
T KOG3864|consen  176 KNLRRLHLYDLPYV  189 (221)
T ss_pred             hhhHHHHhcCchhh
Confidence            55555555544333

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.27  E-value=2.3e-07  Score=81.61  Aligned_cols=129  Identities=19%  Similarity=0.227  Sum_probs=67.2

Q ss_pred             EeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCC
Q 026356           26 IDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPE  105 (240)
Q Consensus        26 L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~  105 (240)
                      |++++|. +.+-.+..  +.++++|+++++.+ +.++.     +.+ +.....+|++|++.+ +.|+.-.-+.++. .|.
T Consensus        83 LdlsnNk-l~~id~~~--f~nl~nLq~v~l~~-N~Lt~-----IP~-f~~~sghl~~L~L~~-N~I~sv~se~L~~-l~a  150 (873)
T KOG4194|consen   83 LDLSNNK-LSHIDFEF--FYNLPNLQEVNLNK-NELTR-----IPR-FGHESGHLEKLDLRH-NLISSVTSEELSA-LPA  150 (873)
T ss_pred             eeccccc-cccCcHHH--HhcCCcceeeeecc-chhhh-----ccc-ccccccceeEEeeec-cccccccHHHHHh-Hhh
Confidence            6666665 33322222  23666777766665 32222     111 112235677777766 4555444444443 666


Q ss_pred             CCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCH
Q 026356          106 LKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMIL  171 (240)
Q Consensus       106 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~  171 (240)
                      |++||++.+ .++.--...+. .-++|++|+++++ .||+-...... ++.+|..|.|++ +++|.
T Consensus       151 lrslDLSrN-~is~i~~~sfp-~~~ni~~L~La~N-~It~l~~~~F~-~lnsL~tlkLsr-Nritt  211 (873)
T KOG4194|consen  151 LRSLDLSRN-LISEIPKPSFP-AKVNIKKLNLASN-RITTLETGHFD-SLNSLLTLKLSR-NRITT  211 (873)
T ss_pred             hhhhhhhhc-hhhcccCCCCC-CCCCceEEeeccc-ccccccccccc-ccchheeeeccc-Ccccc
Confidence            777777754 33322221121 2236778888777 67765444332 245677777777 45554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.22  E-value=6.5e-07  Score=68.56  Aligned_cols=130  Identities=25%  Similarity=0.334  Sum_probs=39.5

Q ss_pred             cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHH
Q 026356           46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL  125 (240)
Q Consensus        46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l  125 (240)
                      +...+++|++++ +.|..  ++.+..    .+.+|+.|+++++ .++.  ++.+. .++.|++|+++++ .+++-+ ..+
T Consensus        17 n~~~~~~L~L~~-n~I~~--Ie~L~~----~l~~L~~L~Ls~N-~I~~--l~~l~-~L~~L~~L~L~~N-~I~~i~-~~l   83 (175)
T PF14580_consen   17 NPVKLRELNLRG-NQIST--IENLGA----TLDKLEVLDLSNN-QITK--LEGLP-GLPRLKTLDLSNN-RISSIS-EGL   83 (175)
T ss_dssp             ----------------------S--T----T-TT--EEE-TTS---S----TT-----TT--EEE--SS----S-C-HHH
T ss_pred             cccccccccccc-ccccc--ccchhh----hhcCCCEEECCCC-CCcc--ccCcc-ChhhhhhcccCCC-CCCccc-cch
Confidence            344577788877 33433  222221    2367788888874 5553  23333 2677888888766 454421 123


Q ss_pred             HHcCCcCCEEeccCCCCCCH-HHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecc
Q 026356          126 VKNCKHIIDLNLSGCKNLLD-KSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQI  201 (240)
Q Consensus       126 ~~~~~~L~~L~l~~c~~ltd-~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l  201 (240)
                      ...+|+|++|+++++ .|.+ ..+..+. .+|+|+.|++.++ -+++..          .-+...+..+|.|+.+|-
T Consensus        84 ~~~lp~L~~L~L~~N-~I~~l~~l~~L~-~l~~L~~L~L~~N-Pv~~~~----------~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   84 DKNLPNLQELYLSNN-KISDLNELEPLS-SLPKLRVLSLEGN-PVCEKK----------NYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             HHH-TT--EEE-TTS----SCCCCGGGG-G-TT--EEE-TT--GGGGST----------THHHHHHHH-TT-SEETT
T ss_pred             HHhCCcCCEEECcCC-cCCChHHhHHHH-cCCCcceeeccCC-cccchh----------hHHHHHHHHcChhheeCC
Confidence            345678888888777 5654 2223332 4777888888774 343210          012234455666666654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.12  E-value=5.6e-07  Score=68.94  Aligned_cols=126  Identities=20%  Similarity=0.306  Sum_probs=51.1

Q ss_pred             eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356           24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC  103 (240)
Q Consensus        24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~  103 (240)
                      +.|+|+++..-   .++.++ ..+.+|+.|++++ +.|..-  ..+     ..+++|+.|++++ +.+++-+ ..+...+
T Consensus        22 ~~L~L~~n~I~---~Ie~L~-~~l~~L~~L~Ls~-N~I~~l--~~l-----~~L~~L~~L~L~~-N~I~~i~-~~l~~~l   87 (175)
T PF14580_consen   22 RELNLRGNQIS---TIENLG-ATLDKLEVLDLSN-NQITKL--EGL-----PGLPRLKTLDLSN-NRISSIS-EGLDKNL   87 (175)
T ss_dssp             -----------------S---TT-TT--EEE-TT-S--S----TT---------TT--EEE--S-S---S-C-HHHHHH-
T ss_pred             ccccccccccc---cccchh-hhhcCCCEEECCC-CCCccc--cCc-----cChhhhhhcccCC-CCCCccc-cchHHhC
Confidence            45899988732   233333 2568899999999 455542  111     2348999999999 6887632 2344469


Q ss_pred             CCCCEEEecCCCCCCHH-HHHHHHHcCCcCCEEeccCCCCCCHHH--HHHHHHhCCCCcEEeccCC
Q 026356          104 PELKVFSIYWNVRVTDI-GIQHLVKNCKHIIDLNLSGCKNLLDKS--LQLIADNYQELESLNLTRY  166 (240)
Q Consensus       104 ~~L~~L~l~~~~~l~~~-~~~~l~~~~~~L~~L~l~~c~~ltd~~--l~~l~~~~~~L~~L~l~~c  166 (240)
                      |+|++|+++++ ++.+- .+..+ ..+|+|+.|++.+++ +++..  -..+...+|+|+.||-...
T Consensus        88 p~L~~L~L~~N-~I~~l~~l~~L-~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   88 PNLQELYLSNN-KISDLNELEPL-SSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             TT--EEE-TTS----SCCCCGGG-GG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             CcCCEEECcCC-cCCChHHhHHH-HcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEc
Confidence            99999999987 55442 23344 478999999999994 55422  2334456999999998764

>PLN03210 Resistant to P

Probab=98.06  E-value=2.1e-06  Score=84.00  Aligned_cols=112  Identities=16%  Similarity=0.242  Sum_probs=58.2

Q ss_pred             CCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhC
Q 026356           76 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY  155 (240)
Q Consensus        76 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~  155 (240)
                      .+++|+.|++++|..+..-.-   ...+++|+.|++++|..+..     +....++|+.|+++++ .++.-.. .+ ..+
T Consensus       800 ~L~~L~~L~Ls~C~~L~~LP~---~~~L~sL~~L~Ls~c~~L~~-----~p~~~~nL~~L~Ls~n-~i~~iP~-si-~~l  868 (1153)
T PLN03210        800 NLHKLEHLEIENCINLETLPT---GINLESLESLDLSGCSRLRT-----FPDISTNISDLNLSRT-GIEEVPW-WI-EKF  868 (1153)
T ss_pred             CCCCCCEEECCCCCCcCeeCC---CCCccccCEEECCCCCcccc-----ccccccccCEeECCCC-CCccChH-HH-hcC
Confidence            346666666666654332100   01355666666666654421     2222346677777666 5543211 12 347


Q ss_pred             CCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecc
Q 026356          156 QELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQI  201 (240)
Q Consensus       156 ~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l  201 (240)
                      ++|+.|++++|++++.-..   .......++.+.+.+|+.|..+.+
T Consensus       869 ~~L~~L~L~~C~~L~~l~~---~~~~L~~L~~L~l~~C~~L~~~~l  911 (1153)
T PLN03210        869 SNLSFLDMNGCNNLQRVSL---NISKLKHLETVDFSDCGALTEASW  911 (1153)
T ss_pred             CCCCEEECCCCCCcCccCc---ccccccCCCeeecCCCcccccccC
Confidence            7888888888877654211   111122245556677776665544

syringae 6; Provisional

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=98.01  E-value=3.1e-06  Score=74.80  Aligned_cols=194  Identities=14%  Similarity=0.200  Sum_probs=104.4

Q ss_pred             EeccCCCCCChHHHHHh--hhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHh--
Q 026356           26 IDLREMNNAGNRLVAAL--SIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS--  101 (240)
Q Consensus        26 L~l~~~~~~~~~~l~~l--~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~--  101 (240)
                      +.|.+|. +.+.....+  .+.-.+.|+.|++++ +.+++.+...+.......-+.++.|.+..| .+++.+...++.  
T Consensus        92 L~L~~~~-l~~~~~~~l~~~l~t~~~L~~L~l~~-n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   92 LSLANNR-LGDRGAEELAQALKTLPTLGQLDLSG-NNLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLAAVL  168 (478)
T ss_pred             hhhhhCc-cccchHHHHHHHhcccccHhHhhccc-CCCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHHHHH
Confidence            5566665 333333333  234566777777777 567777777777755333355666777776 666666555443  


Q ss_pred             -cCCCCCEEEecCCCCCCHHHHHHHHHc-------CCcCCEEeccCCCCCCHHHHHHHHHh---CCC-CcEEeccCCCCC
Q 026356          102 -TCPELKVFSIYWNVRVTDIGIQHLVKN-------CKHIIDLNLSGCKNLLDKSLQLIADN---YQE-LESLNLTRYVNM  169 (240)
Q Consensus       102 -~~~~L~~L~l~~~~~l~~~~~~~l~~~-------~~~L~~L~l~~c~~ltd~~l~~l~~~---~~~-L~~L~l~~c~~i  169 (240)
                       .+..+++++++.| .+.+.+...+.+.       ..+++.|++.+| .+++..+..+...   .++ +..+++.. +.+
T Consensus       169 ~~~~~l~~l~l~~n-~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~-n~l  245 (478)
T KOG4308|consen  169 EKNEHLTELDLSLN-GLIELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLAS-NKL  245 (478)
T ss_pred             hcccchhHHHHHhc-ccchhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHh-cCc
Confidence             2555677777665 3434444443322       235777777777 6776666655543   223 44566665 466


Q ss_pred             CHHHHHHHHHhChhhhhHHHhcCC-ccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhh
Q 026356          170 ILLGLFYIWSNNILLMSEFIYHGI-RFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK  234 (240)
Q Consensus       170 t~~~~~~l~~~~~~~l~~l~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  234 (240)
                      .|.|+..+.+.         +... +.++.+++..+.+.+...-...-....|+.++++.+...+.
T Consensus       246 ~d~g~~~L~~~---------l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l  302 (478)
T KOG4308|consen  246 GDVGVEKLLPC---------LSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL  302 (478)
T ss_pred             chHHHHHHHHH---------hcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence            67666665543         1111 33445555555555442211111114455555555554443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.90  E-value=0.00027  Score=57.27  Aligned_cols=48  Identities=17%  Similarity=0.277  Sum_probs=26.7

Q ss_pred             CcCCEEeccCCCCCCHHHHHHHHH----hCCCCcEEeccCCCCCCHHHHHHHHH
Q 026356          130 KHIIDLNLSGCKNLLDKSLQLIAD----NYQELESLNLTRYVNMILLGLFYIWS  179 (240)
Q Consensus       130 ~~L~~L~l~~c~~ltd~~l~~l~~----~~~~L~~L~l~~c~~it~~~~~~l~~  179 (240)
                      .+|+.+.+.++ .|..+++..++.    ++++|+.||+.. +-+|..|-.+++.
T Consensus       185 ~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqD-Ntft~~gS~~La~  236 (388)
T COG5238         185 ENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQD-NTFTLEGSRYLAD  236 (388)
T ss_pred             cCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccc-cchhhhhHHHHHH
Confidence            45556666655 566555544332    356666666666 3555555555544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.88  E-value=0.00016  Score=58.53  Aligned_cols=194  Identities=14%  Similarity=0.138  Sum_probs=108.4

Q ss_pred             EEeccCCCCCChHHHHHhh--hhcCCCCceEeccCC--CCCcHH---HHHHHHHHccCCCCCccEEecCCCCCCcHHH--
Q 026356           25 VIDLREMNNAGNRLVAALS--IPRYRHVREINLEFA--QDIEDR---HLELLKTKCLGSLQDLESLNLNGCQKISDKG--   95 (240)
Q Consensus        25 ~L~l~~~~~~~~~~l~~l~--~~~~~~L~~L~l~~c--~~i~~~---~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~--   95 (240)
                      -++|+||. ++.+....++  +.+-.+|+..+++.-  ....|.   .+..+.... ..||+|+..++|. +-+....  
T Consensus        34 evdLSGNt-igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aL-lkcp~l~~v~LSD-NAfg~~~~e  110 (388)
T COG5238          34 EVDLSGNT-IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKAL-LKCPRLQKVDLSD-NAFGSEFPE  110 (388)
T ss_pred             EEeccCCc-ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHH-hcCCcceeeeccc-cccCcccch
Confidence            37888887 5555555554  234556777777642  112222   233333322 4568888888887 3444333  


Q ss_pred             -HHHHHhcCCCCCEEEecCCCCCCHHHHH-------HHH-----HcCCcCCEEeccCCCCCCHHHHHHHHH---hCCCCc
Q 026356           96 -IEIISSTCPELKVFSIYWNVRVTDIGIQ-------HLV-----KNCKHIIDLNLSGCKNLLDKSLQLIAD---NYQELE  159 (240)
Q Consensus        96 -~~~l~~~~~~L~~L~l~~~~~l~~~~~~-------~l~-----~~~~~L~~L~l~~c~~ltd~~l~~l~~---~~~~L~  159 (240)
                       +..+..+-..|++|.+++| .++..+-.       .++     ..-|.|+....+.+ ++-..+....+.   .-.+|+
T Consensus       111 ~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN-Rlengs~~~~a~~l~sh~~lk  188 (388)
T COG5238         111 ELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN-RLENGSKELSAALLESHENLK  188 (388)
T ss_pred             HHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc-hhccCcHHHHHHHHHhhcCce
Confidence             2233334667888888876 55433221       121     24467888887777 555444433332   225788


Q ss_pred             EEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCchhHHHHHH-Hhhcccccchhhhhhhh
Q 026356          160 SLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYII-ETNTYKHGKEKHIIETI  233 (240)
Q Consensus       160 ~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~c~  233 (240)
                      .+.+.+ +.|...|+..++-.        -+..+..|+.+++..+..+.. +..+.. .-..-+.|++|.+..|-
T Consensus       189 ~vki~q-NgIrpegv~~L~~~--------gl~y~~~LevLDlqDNtft~~-gS~~La~al~~W~~lrEL~lnDCl  253 (388)
T COG5238         189 EVKIQQ-NGIRPEGVTMLAFL--------GLFYSHSLEVLDLQDNTFTLE-GSRYLADALCEWNLLRELRLNDCL  253 (388)
T ss_pred             eEEeee-cCcCcchhHHHHHH--------HHHHhCcceeeeccccchhhh-hHHHHHHHhcccchhhhccccchh
Confidence            888887 68888888776643        234456667777755555443 222222 11334556777666664

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.80  E-value=4.3e-06  Score=73.89  Aligned_cols=106  Identities=24%  Similarity=0.292  Sum_probs=48.8

Q ss_pred             CCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHH
Q 026356           48 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK  127 (240)
Q Consensus        48 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~  127 (240)
                      .+|+.|++.+ +.|.....+.++..     +.|++|++|. +.++.-...... .-.++++|+++++ .+++-+...+. 
T Consensus       125 ghl~~L~L~~-N~I~sv~se~L~~l-----~alrslDLSr-N~is~i~~~sfp-~~~ni~~L~La~N-~It~l~~~~F~-  194 (873)
T KOG4194|consen  125 GHLEKLDLRH-NLISSVTSEELSAL-----PALRSLDLSR-NLISEIPKPSFP-AKVNIKKLNLASN-RITTLETGHFD-  194 (873)
T ss_pred             cceeEEeeec-cccccccHHHHHhH-----hhhhhhhhhh-chhhcccCCCCC-CCCCceEEeeccc-ccccccccccc-
Confidence            4577777776 55655555544432     5566666655 333321111111 1234566666554 45444433332 


Q ss_pred             cCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccC
Q 026356          128 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR  165 (240)
Q Consensus       128 ~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~  165 (240)
                      ++.+|-.|.++.+ ++|--.... ++++|+|+.|+|.+
T Consensus       195 ~lnsL~tlkLsrN-rittLp~r~-Fk~L~~L~~LdLnr  230 (873)
T KOG4194|consen  195 SLNSLLTLKLSRN-RITTLPQRS-FKRLPKLESLDLNR  230 (873)
T ss_pred             ccchheeeecccC-cccccCHHH-hhhcchhhhhhccc
Confidence            3335555555555 444322221 12345555555544

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=97.66  E-value=5.9e-05  Score=38.64  Aligned_cols=25  Identities=24%  Similarity=0.255  Sum_probs=22.9

Q ss_pred             CCCCcEEeccCCCCCCHHHHHHHHH
Q 026356          155 YQELESLNLTRYVNMILLGLFYIWS  179 (240)
Q Consensus       155 ~~~L~~L~l~~c~~it~~~~~~l~~  179 (240)
                      |++|+.|++++|.++||.|+..++.
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~~   25 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALAK   25 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence            6899999999999999999998864

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=97.65  E-value=2.9e-05  Score=68.75  Aligned_cols=168  Identities=16%  Similarity=0.165  Sum_probs=104.2

Q ss_pred             EeccCCCCCChHHHHHhh--hhcC-CCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhc
Q 026356           26 IDLREMNNAGNRLVAALS--IPRY-RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST  102 (240)
Q Consensus        26 L~l~~~~~~~~~~l~~l~--~~~~-~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~  102 (240)
                      |+++++. +++.+...+.  +... +.++.|.+..| .+++.+...++..... ...++.++++.+ .+...+...+++.
T Consensus       120 L~l~~n~-l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~~~L~~-~~~l~~l~l~~n-~l~~~g~~~l~~~  195 (478)
T KOG4308|consen  120 LDLSGNN-LGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLAAVLEK-NEHLTELDLSLN-GLIELGLLVLSQA  195 (478)
T ss_pred             hhcccCC-CccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHHHHHhc-ccchhHHHHHhc-ccchhhhHHHhhh
Confidence            8888887 4466665553  2222 34677777775 4777777777776644 677777777775 4445555444432


Q ss_pred             -------CCCCCEEEecCCCCCCHHHHHHHHHcC---Cc-CCEEeccCCCCCCHHHHHHHHHhCC----CCcEEeccCCC
Q 026356          103 -------CPELKVFSIYWNVRVTDIGIQHLVKNC---KH-IIDLNLSGCKNLLDKSLQLIADNYQ----ELESLNLTRYV  167 (240)
Q Consensus       103 -------~~~L~~L~l~~~~~l~~~~~~~l~~~~---~~-L~~L~l~~c~~ltd~~l~~l~~~~~----~L~~L~l~~c~  167 (240)
                             ..++++|++++| .++......+....   +. +..|++..+ .+.|.++..+....+    .++.+++++| 
T Consensus       196 l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~n-~l~d~g~~~L~~~l~~~~~~l~~l~l~~n-  272 (478)
T KOG4308|consen  196 LESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLASN-KLGDVGVEKLLPCLSVLSETLRVLDLSRN-  272 (478)
T ss_pred             hhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHhc-CcchHHHHHHHHHhcccchhhhhhhhhcC-
Confidence                   334677777777 56666655554333   33 555777777 677777776665433    4477777774 


Q ss_pred             CCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCch
Q 026356          168 NMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDH  209 (240)
Q Consensus       168 ~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~  209 (240)
                      .+++.|...++..         ...|++++.+.++.+.+.+.
T Consensus       273 si~~~~~~~L~~~---------l~~~~~l~~l~l~~n~l~~~  305 (478)
T KOG4308|consen  273 SITEKGVRDLAEV---------LVSCRQLEELSLSNNPLTDY  305 (478)
T ss_pred             CccccchHHHHHH---------HhhhHHHHHhhcccCccccH
Confidence            6777776666542         24455666677777776666

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.40  E-value=4.5e-05  Score=70.69  Aligned_cols=123  Identities=20%  Similarity=0.314  Sum_probs=62.6

Q ss_pred             EeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCC
Q 026356           26 IDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPE  105 (240)
Q Consensus        26 L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~  105 (240)
                      |.+.+|. +++..+..+.  .+.+||.|++++ +.++......+     .+++.|++|++|| ++++.-. ..++ .|+.
T Consensus       364 LylanN~-Ltd~c~p~l~--~~~hLKVLhLsy-NrL~~fpas~~-----~kle~LeeL~LSG-NkL~~Lp-~tva-~~~~  431 (1081)
T KOG0618|consen  364 LYLANNH-LTDSCFPVLV--NFKHLKVLHLSY-NRLNSFPASKL-----RKLEELEELNLSG-NKLTTLP-DTVA-NLGR  431 (1081)
T ss_pred             HHHhcCc-ccccchhhhc--cccceeeeeecc-cccccCCHHHH-----hchHHhHHHhccc-chhhhhh-HHHH-hhhh
Confidence            6666565 5666666543  677788888887 54443222222     2236778888888 5665433 2222 2444


Q ss_pred             CCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCC
Q 026356          106 LKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY  166 (240)
Q Consensus       106 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c  166 (240)
                      |++|...++ .+...  ..++ ..++|+.+|+|.+ .++...+....- .|+|++||++++
T Consensus       432 L~tL~ahsN-~l~~f--Pe~~-~l~qL~~lDlS~N-~L~~~~l~~~~p-~p~LkyLdlSGN  486 (1081)
T KOG0618|consen  432 LHTLRAHSN-QLLSF--PELA-QLPQLKVLDLSCN-NLSEVTLPEALP-SPNLKYLDLSGN  486 (1081)
T ss_pred             hHHHhhcCC-ceeec--hhhh-hcCcceEEecccc-hhhhhhhhhhCC-CcccceeeccCC
Confidence            444444333 11111  1121 3456666666655 555444433211 256666666664

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=97.18  E-value=4.9e-05  Score=68.06  Aligned_cols=39  Identities=10%  Similarity=-0.084  Sum_probs=22.9

Q ss_pred             cCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhh
Q 026356          191 HGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK  234 (240)
Q Consensus       191 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  234 (240)
                      .-|..|+.+.++.+++...-   ..+  .-++.|+.|+++..|.
T Consensus       336 cRC~kL~kL~L~~NrLiTLP---eaI--HlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  336 CRCVKLQKLKLDHNRLITLP---EAI--HLLPDLKVLDLRENPN  374 (1255)
T ss_pred             hhhHHHHHhcccccceeech---hhh--hhcCCcceeeccCCcC
Confidence            44556777777666654431   112  3457778888777653

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.08  E-value=0.00085  Score=55.16  Aligned_cols=79  Identities=16%  Similarity=0.124  Sum_probs=43.9

Q ss_pred             EeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcH-HHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCC
Q 026356           26 IDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIED-RHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCP  104 (240)
Q Consensus        26 L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~-~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~  104 (240)
                      +||.+|..-.+..+.++. .++|.|+.|+++. +.+.. .+-.      +....+|+.|-+.| +.++...........|
T Consensus        76 lDL~~N~iSdWseI~~il-e~lP~l~~LNls~-N~L~s~I~~l------p~p~~nl~~lVLNg-T~L~w~~~~s~l~~lP  146 (418)
T KOG2982|consen   76 LDLTGNLISDWSEIGAIL-EQLPALTTLNLSC-NSLSSDIKSL------PLPLKNLRVLVLNG-TGLSWTQSTSSLDDLP  146 (418)
T ss_pred             hhcccchhccHHHHHHHH-hcCccceEeeccC-CcCCCccccC------cccccceEEEEEcC-CCCChhhhhhhhhcch
Confidence            666666655565555554 3666777777665 33322 1111      12335666666766 4666666655555666


Q ss_pred             CCCEEEecC
Q 026356          105 ELKVFSIYW  113 (240)
Q Consensus       105 ~L~~L~l~~  113 (240)
                      .+++|.++.
T Consensus       147 ~vtelHmS~  155 (418)
T KOG2982|consen  147 KVTELHMSD  155 (418)
T ss_pred             hhhhhhhcc
Confidence            666665554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=96.90  E-value=5.5e-05  Score=67.77  Aligned_cols=13  Identities=0%  Similarity=-0.128  Sum_probs=7.8

Q ss_pred             cccccchhhhhhh
Q 026356          220 TYKHGKEKHIIET  232 (240)
Q Consensus       220 ~~~~L~~L~l~~c  232 (240)
                      .|+.|+.|.+...
T Consensus       337 RC~kL~kL~L~~N  349 (1255)
T KOG0444|consen  337 RCVKLQKLKLDHN  349 (1255)
T ss_pred             hhHHHHHhccccc
Confidence            4666666666543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=96.84  E-value=0.0011  Score=63.12  Aligned_cols=78  Identities=24%  Similarity=0.281  Sum_probs=38.1

Q ss_pred             cCeEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCc--HHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHH
Q 026356           22 VPKVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIE--DRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII   99 (240)
Q Consensus        22 ~~~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~--~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l   99 (240)
                      ..++|||++|...+.  ++. +++.+-+|++|++++ +.+.  ..++..+        ..|.+|++........  +..+
T Consensus       572 ~LrVLDLs~~~~l~~--LP~-~I~~Li~LryL~L~~-t~I~~LP~~l~~L--------k~L~~Lnl~~~~~l~~--~~~i  637 (889)
T KOG4658|consen  572 LLRVLDLSGNSSLSK--LPS-SIGELVHLRYLDLSD-TGISHLPSGLGNL--------KKLIYLNLEVTGRLES--IPGI  637 (889)
T ss_pred             ceEEEECCCCCccCc--CCh-HHhhhhhhhcccccC-CCccccchHHHHH--------Hhhheecccccccccc--ccch
Confidence            345577776654332  111 123566677777776 4454  2233322        5566666655322111  1222


Q ss_pred             HhcCCCCCEEEecC
Q 026356          100 SSTCPELKVFSIYW  113 (240)
Q Consensus       100 ~~~~~~L~~L~l~~  113 (240)
                      ...+++|+.|.+..
T Consensus       638 ~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  638 LLELQSLRVLRLPR  651 (889)
T ss_pred             hhhcccccEEEeec
Confidence            23356667666654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.79  E-value=0.00032  Score=57.59  Aligned_cols=106  Identities=22%  Similarity=0.255  Sum_probs=47.6

Q ss_pred             eEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHH-HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCC
Q 026356           52 EINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDK-GIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCK  130 (240)
Q Consensus        52 ~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~-~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~  130 (240)
                      -|.+.+|..-+...+..+++.+    ..++.+++.+ +.+++. -+..|..++|.|+.|+++.+ .+.. .+..+..-..
T Consensus        49 llvln~~~id~~gd~~~~~~~~----~~v~elDL~~-N~iSdWseI~~ile~lP~l~~LNls~N-~L~s-~I~~lp~p~~  121 (418)
T KOG2982|consen   49 LLVLNGSIIDNEGDVMLFGSSV----TDVKELDLTG-NLISDWSEIGAILEQLPALTTLNLSCN-SLSS-DIKSLPLPLK  121 (418)
T ss_pred             hheecCCCCCcchhHHHHHHHh----hhhhhhhccc-chhccHHHHHHHHhcCccceEeeccCC-cCCC-ccccCccccc
Confidence            4444454323333444444444    5566666665 455442 23444455666666666533 2211 1122211123


Q ss_pred             cCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccC
Q 026356          131 HIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR  165 (240)
Q Consensus       131 ~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~  165 (240)
                      +|+.|-+.+. .++...........|.++.|.++.
T Consensus       122 nl~~lVLNgT-~L~w~~~~s~l~~lP~vtelHmS~  155 (418)
T KOG2982|consen  122 NLRVLVLNGT-GLSWTQSTSSLDDLPKVTELHMSD  155 (418)
T ss_pred             ceEEEEEcCC-CCChhhhhhhhhcchhhhhhhhcc
Confidence            5555555555 454444443334444444444443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=96.78  E-value=9.7e-05  Score=68.57  Aligned_cols=129  Identities=17%  Similarity=0.223  Sum_probs=71.0

Q ss_pred             CCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHH
Q 026356           48 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK  127 (240)
Q Consensus        48 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~  127 (240)
                      +.|+.|.+.+ +.++|.++..+..     +++|+.|++++ +.++...-..+. +++.|++|++||+ +++.-.  .-..
T Consensus       359 ~~Lq~Lylan-N~Ltd~c~p~l~~-----~~hLKVLhLsy-NrL~~fpas~~~-kle~LeeL~LSGN-kL~~Lp--~tva  427 (1081)
T KOG0618|consen  359 AALQELYLAN-NHLTDSCFPVLVN-----FKHLKVLHLSY-NRLNSFPASKLR-KLEELEELNLSGN-KLTTLP--DTVA  427 (1081)
T ss_pred             HHHHHHHHhc-Ccccccchhhhcc-----ccceeeeeecc-cccccCCHHHHh-chHHhHHHhcccc-hhhhhh--HHHH
Confidence            3455566665 5566666665433     46777777777 444322222222 3666777777776 443322  1112


Q ss_pred             cCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCC
Q 026356          128 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSN  205 (240)
Q Consensus       128 ~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~  205 (240)
                      .|+.|+.|...++ .+..-.  .++ ..+.|+.+|++. ++++.-.+.+...             -++|+.++++++.
T Consensus       428 ~~~~L~tL~ahsN-~l~~fP--e~~-~l~qL~~lDlS~-N~L~~~~l~~~~p-------------~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  428 NLGRLHTLRAHSN-QLLSFP--ELA-QLPQLKVLDLSC-NNLSEVTLPEALP-------------SPNLKYLDLSGNT  487 (1081)
T ss_pred             hhhhhHHHhhcCC-ceeech--hhh-hcCcceEEeccc-chhhhhhhhhhCC-------------CcccceeeccCCc
Confidence            5566777776666 443222  333 378899999985 5665543332211             1556677776554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.69  E-value=0.00083  Score=61.34  Aligned_cols=165  Identities=16%  Similarity=0.174  Sum_probs=87.0

Q ss_pred             hhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC-----C-----CCCEEEecC
Q 026356           44 IPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC-----P-----ELKVFSIYW  113 (240)
Q Consensus        44 ~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~-----~-----~L~~L~l~~  113 (240)
                      +..+..|++|.+++|+--.-.|+..+-       .+|++|-..+    +-+++.++...|     .     .|...+.++
T Consensus       105 ifpF~sLr~LElrg~~L~~~~GL~~lr-------~qLe~LIC~~----Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsy  173 (1096)
T KOG1859|consen  105 IFPFRSLRVLELRGCDLSTAKGLQELR-------HQLEKLICHN----SLDALRHVFASCGGDISNSPVWNKLATASFSY  173 (1096)
T ss_pred             eccccceeeEEecCcchhhhhhhHHHH-------Hhhhhhhhhc----cHHHHHHHHHHhccccccchhhhhHhhhhcch
Confidence            335677888888887543444555443       3555555433    223333333222     1     133444443


Q ss_pred             CCCC--CHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCH---HHHHH-----HHHhChh
Q 026356          114 NVRV--TDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMIL---LGLFY-----IWSNNIL  183 (240)
Q Consensus       114 ~~~l--~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~---~~~~~-----l~~~~~~  183 (240)
                      + .+  -|+.+    +-.+.|++|+++++ .+++..  .|. .+++|++|||+++ .++.   .+...     +...+..
T Consensus       174 N-~L~~mD~SL----qll~ale~LnLshN-k~~~v~--~Lr-~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~lrnN~  243 (1096)
T KOG1859|consen  174 N-RLVLMDESL----QLLPALESLNLSHN-KFTKVD--NLR-RLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLNLRNNA  243 (1096)
T ss_pred             h-hHHhHHHHH----HHHHHhhhhccchh-hhhhhH--HHH-hcccccccccccc-hhccccccchhhhhheeeeecccH
Confidence            3 22  13333    33467899999998 676544  343 4888999999884 3321   11111     1111111


Q ss_pred             hhhHH-HhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356          184 LMSEF-IYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  233 (240)
Q Consensus       184 ~l~~l-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  233 (240)
                       ++++ .+..++.|+.+|++++-+.+...+. ++  -.+..|++|++.+.|
T Consensus       244 -l~tL~gie~LksL~~LDlsyNll~~hseL~-pL--wsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  244 -LTTLRGIENLKSLYGLDLSYNLLSEHSELE-PL--WSLSSLIVLWLEGNP  290 (1096)
T ss_pred             -HHhhhhHHhhhhhhccchhHhhhhcchhhh-HH--HHHHHHHHHhhcCCc
Confidence             3322 2344456777888887776653222 22  355678888887765

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.49  E-value=7.8e-05  Score=46.69  Aligned_cols=36  Identities=28%  Similarity=0.319  Sum_probs=15.1

Q ss_pred             cCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccC
Q 026356          128 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR  165 (240)
Q Consensus       128 ~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~  165 (240)
                      .+++|+.|+++++ .++.-... ...++++|++|++++
T Consensus        23 ~l~~L~~L~l~~N-~l~~i~~~-~f~~l~~L~~L~l~~   58 (61)
T PF13855_consen   23 NLPNLETLDLSNN-NLTSIPPD-AFSNLPNLRYLDLSN   58 (61)
T ss_dssp             TGTTESEEEETSS-SESEEETT-TTTTSTTESEEEETS
T ss_pred             CCCCCCEeEccCC-ccCccCHH-HHcCCCCCCEEeCcC
Confidence            3445555555544 34321111 112345555555555

...

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.44  E-value=0.0044  Score=58.12  Aligned_cols=90  Identities=18%  Similarity=0.211  Sum_probs=44.5

Q ss_pred             CCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHH
Q 026356           48 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK  127 (240)
Q Consensus        48 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~  127 (240)
                      ++|+.|++.. ++++..         +...++|++|+++++ +++.-     ....++|+.|+++++ .++.     +..
T Consensus       222 ~~L~~L~L~~-N~Lt~L---------P~lp~~Lk~LdLs~N-~LtsL-----P~lp~sL~~L~Ls~N-~L~~-----Lp~  279 (788)
T PRK15387        222 AHITTLVIPD-NNLTSL---------PALPPELRTLEVSGN-QLTSL-----PVLPPGLLELSIFSN-PLTH-----LPA  279 (788)
T ss_pred             cCCCEEEccC-CcCCCC---------CCCCCCCcEEEecCC-ccCcc-----cCcccccceeeccCC-chhh-----hhh
Confidence            3577777776 445421         112367777777773 55421     122346666666655 2321     111


Q ss_pred             cCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccC
Q 026356          128 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR  165 (240)
Q Consensus       128 ~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~  165 (240)
                      ..++|+.|+++++ .++.-     ....++|+.|++++
T Consensus       280 lp~~L~~L~Ls~N-~Lt~L-----P~~p~~L~~LdLS~  311 (788)
T PRK15387        280 LPSGLCKLWIFGN-QLTSL-----PVLPPGLQELSVSD  311 (788)
T ss_pred             chhhcCEEECcCC-ccccc-----cccccccceeECCC
Confidence            2235556666665 44421     11234566666655

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.34  E-value=0.00014  Score=45.54  Aligned_cols=13  Identities=31%  Similarity=0.296  Sum_probs=6.5

Q ss_pred             cCCcCCEEeccCC
Q 026356          128 NCKHIIDLNLSGC  140 (240)
Q Consensus       128 ~~~~L~~L~l~~c  140 (240)
                      .+++|++|++++|
T Consensus        47 ~l~~L~~L~l~~N   59 (61)
T PF13855_consen   47 NLPNLRYLDLSNN   59 (61)
T ss_dssp             TSTTESEEEETSS
T ss_pred             CCCCCCEEeCcCC
Confidence            4445555555544

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=96.30  E-value=0.0012  Score=56.07  Aligned_cols=76  Identities=12%  Similarity=0.103  Sum_probs=48.6

Q ss_pred             HhCCCCcEEeccCCCCCCHHHHHHHH-----------HhChhhhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcc
Q 026356          153 DNYQELESLNLTRYVNMILLGLFYIW-----------SNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTY  221 (240)
Q Consensus       153 ~~~~~L~~L~l~~c~~it~~~~~~l~-----------~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~  221 (240)
                      +.+++|++|++++ +.++.-.-..|.           .+....+++-.+.|+..|+.+++..+.++.. ..+ .+  +..
T Consensus       271 ~~L~~L~~lnlsn-N~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~-~~~-aF--~~~  345 (498)
T KOG4237|consen  271 KKLPNLRKLNLSN-NKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTV-APG-AF--QTL  345 (498)
T ss_pred             hhcccceEeccCC-CccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEE-ecc-cc--ccc
Confidence            4578999999998 577653222211           1222223444778888899999999888876 222 23  355


Q ss_pred             cccchhhhhhhh
Q 026356          222 KHGKEKHIIETI  233 (240)
Q Consensus       222 ~~L~~L~l~~c~  233 (240)
                      .+|.+|++-+.|
T Consensus       346 ~~l~~l~l~~Np  357 (498)
T KOG4237|consen  346 FSLSTLNLLSNP  357 (498)
T ss_pred             ceeeeeehccCc
Confidence            677777776544

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=96.25  E-value=0.0038  Score=31.05  Aligned_cols=9  Identities=33%  Similarity=0.412  Sum_probs=2.7

Q ss_pred             CCEEeccCC
Q 026356          132 IIDLNLSGC  140 (240)
Q Consensus       132 L~~L~l~~c  140 (240)
                      |++|++++|
T Consensus         4 L~~L~l~~n   12 (24)
T PF13516_consen    4 LETLDLSNN   12 (24)
T ss_dssp             -SEEE-TSS
T ss_pred             CCEEEccCC
Confidence            333333333

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.23  E-value=0.0043  Score=36.05  Aligned_cols=11  Identities=45%  Similarity=0.709  Sum_probs=4.2

Q ss_pred             CCCCcEEeccC
Q 026356          155 YQELESLNLTR  165 (240)
Q Consensus       155 ~~~L~~L~l~~  165 (240)
                      +++|+.|++++
T Consensus        23 l~~L~~L~l~~   33 (44)
T PF12799_consen   23 LPNLETLNLSN   33 (44)
T ss_dssp             CTTSSEEEETS
T ss_pred             CCCCCEEEecC
Confidence            33333333333

...

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.20  E-value=0.0016  Score=52.31  Aligned_cols=88  Identities=22%  Similarity=0.360  Sum_probs=46.6

Q ss_pred             CCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCH-HHHHHHHHcCCcCCEEeccCCCCCCH--HHHHHH
Q 026356           75 GSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTD-IGIQHLVKNCKHIIDLNLSGCKNLLD--KSLQLI  151 (240)
Q Consensus        75 ~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~L~~L~l~~c~~ltd--~~l~~l  151 (240)
                      ..+++|+.|.++.-.--...++..++..||+|++|+++++ ++.+ +.++.+ +...+|.+|++..| ..+.  .--..+
T Consensus        62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl-~~l~nL~~Ldl~n~-~~~~l~dyre~v  138 (260)
T KOG2739|consen   62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPL-KELENLKSLDLFNC-SVTNLDDYREKV  138 (260)
T ss_pred             CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchh-hhhcchhhhhcccC-CccccccHHHHH
Confidence            3456777777766212233445666666777777777766 3432 222222 24456777777777 3332  111223


Q ss_pred             HHhCCCCcEEeccC
Q 026356          152 ADNYQELESLNLTR  165 (240)
Q Consensus       152 ~~~~~~L~~L~l~~  165 (240)
                      +.-.++|+.||-..
T Consensus       139 f~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  139 FLLLPSLKYLDGCD  152 (260)
T ss_pred             HHHhhhhccccccc
Confidence            33456666666443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=96.04  E-value=0.0028  Score=59.40  Aligned_cols=10  Identities=10%  Similarity=0.039  Sum_probs=5.6

Q ss_pred             cCCEEeccCC
Q 026356          131 HIIDLNLSGC  140 (240)
Q Consensus       131 ~L~~L~l~~c  140 (240)
                      +|+.|++++|
T Consensus       284 sL~~L~Ls~N  293 (754)
T PRK15370        284 ELRYLSVYDN  293 (754)
T ss_pred             CCcEEECCCC
Confidence            4555555555

>PLN03150 hypothetical protein; Provisional

Probab=95.94  E-value=0.011  Score=54.47  Aligned_cols=13  Identities=31%  Similarity=0.340  Sum_probs=6.6

Q ss_pred             cCCcCCEEeccCC
Q 026356          128 NCKHIIDLNLSGC  140 (240)
Q Consensus       128 ~~~~L~~L~l~~c  140 (240)
                      .+++|+.|+++++
T Consensus       488 ~L~~L~~L~Ls~N  500 (623)
T PLN03150        488 QLTSLRILNLNGN  500 (623)
T ss_pred             cCCCCCEEECcCC
Confidence            3445555555554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=95.87  E-value=0.007  Score=50.02  Aligned_cols=117  Identities=17%  Similarity=0.143  Sum_probs=60.2

Q ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCH-HHHHHHHHhC
Q 026356          103 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMIL-LGLFYIWSNN  181 (240)
Q Consensus       103 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~-~~~~~l~~~~  181 (240)
                      ...|++|+++++ .++.  +..-..-.|.++.|+++++ +|+...-  ++ .+++|..||++++ .++. .|+-. --++
T Consensus       283 Wq~LtelDLS~N-~I~~--iDESvKL~Pkir~L~lS~N-~i~~v~n--La-~L~~L~~LDLS~N-~Ls~~~Gwh~-KLGN  353 (490)
T KOG1259|consen  283 WQELTELDLSGN-LITQ--IDESVKLAPKLRRLILSQN-RIRTVQN--LA-ELPQLQLLDLSGN-LLAECVGWHL-KLGN  353 (490)
T ss_pred             Hhhhhhcccccc-chhh--hhhhhhhccceeEEecccc-ceeeehh--hh-hcccceEeecccc-hhHhhhhhHh-hhcC
Confidence            445677777765 3321  1111223467777777777 4543221  32 3667777777774 3333 23321 1111


Q ss_pred             hhh-------hhHHHhcCCcc---ceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356          182 ILL-------MSEFIYHGIRF---FQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  233 (240)
Q Consensus       182 ~~~-------l~~l~~~~~~~---L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  233 (240)
                      .+.       +.  .++|+..   |..+++..+++....   ..-....+|-|+.|.+++.|
T Consensus       354 IKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ld---eV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  354 IKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELD---EVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             EeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHH---HhcccccccHHHHHhhcCCC
Confidence            111       11  3345544   556667666665442   22233567778888777766

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=95.83  E-value=0.0023  Score=58.62  Aligned_cols=78  Identities=28%  Similarity=0.355  Sum_probs=40.5

Q ss_pred             CCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCC
Q 026356           78 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE  157 (240)
Q Consensus        78 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~  157 (240)
                      +.+++|+++. +++++-  ..+ ..|+.|++|||+++ .+..  +..+...--.|..|+++++ .++  .+..+. ++.+
T Consensus       187 ~ale~LnLsh-Nk~~~v--~~L-r~l~~LkhLDlsyN-~L~~--vp~l~~~gc~L~~L~lrnN-~l~--tL~gie-~Lks  255 (1096)
T KOG1859|consen  187 PALESLNLSH-NKFTKV--DNL-RRLPKLKHLDLSYN-CLRH--VPQLSMVGCKLQLLNLRNN-ALT--TLRGIE-NLKS  255 (1096)
T ss_pred             HHhhhhccch-hhhhhh--HHH-Hhcccccccccccc-hhcc--ccccchhhhhheeeeeccc-HHH--hhhhHH-hhhh
Confidence            5666677766 455542  222 24667777777654 2211  1111111113666666666 342  233332 4678


Q ss_pred             CcEEeccCC
Q 026356          158 LESLNLTRY  166 (240)
Q Consensus       158 L~~L~l~~c  166 (240)
                      |+.||++++
T Consensus       256 L~~LDlsyN  264 (1096)
T KOG1859|consen  256 LYGLDLSYN  264 (1096)
T ss_pred             hhccchhHh
Confidence            888888873

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.79  E-value=0.003  Score=51.54  Aligned_cols=82  Identities=15%  Similarity=0.135  Sum_probs=41.0

Q ss_pred             cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCH---HHH
Q 026356           46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTD---IGI  122 (240)
Q Consensus        46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~---~~~  122 (240)
                      ..+.|+.|.|+- ++|+.  +..+.     .|.+|+.|.|.. +.|.+..--...+.+|+|+.|.|..+|-...   ..-
T Consensus        39 kMp~lEVLsLSv-NkIss--L~pl~-----rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR  109 (388)
T KOG2123|consen   39 KMPLLEVLSLSV-NKISS--LAPLQ-----RCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYR  109 (388)
T ss_pred             hcccceeEEeec-ccccc--chhHH-----HHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhhccCCcccccchhHH
Confidence            556666666665 43332  22222     225666666655 3554433222233566666666665543322   223


Q ss_pred             HHHHHcCCcCCEEe
Q 026356          123 QHLVKNCKHIIDLN  136 (240)
Q Consensus       123 ~~l~~~~~~L~~L~  136 (240)
                      ....+.+|+|+.||
T Consensus       110 ~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen  110 RKVLRVLPNLKKLD  123 (388)
T ss_pred             HHHHHHcccchhcc
Confidence            34455666666664

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=95.78  E-value=0.011  Score=29.32  Aligned_cols=21  Identities=33%  Similarity=0.662  Sum_probs=8.3

Q ss_pred             CCccEEecCCCCCCcHHHHHHH
Q 026356           78 QDLESLNLNGCQKISDKGIEII   99 (240)
Q Consensus        78 ~~L~~L~l~~c~~l~~~~~~~l   99 (240)
                      ++|++|++++| .+++.+++.|
T Consensus         2 ~~L~~L~l~~n-~i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNN-QITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSS-BEHHHHHHHH
T ss_pred             CCCCEEEccCC-cCCHHHHHHh
Confidence            34444444443 3444444443

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=95.58  E-value=0.01  Score=49.12  Aligned_cols=79  Identities=24%  Similarity=0.318  Sum_probs=32.0

Q ss_pred             CCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCH-HHHHHHHHhCC
Q 026356           78 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLD-KSLQLIADNYQ  156 (240)
Q Consensus        78 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd-~~l~~l~~~~~  156 (240)
                      ++|++|++|+ +.++.  +.-....+-+++.|.++++.--+-.|+..+    =+|..|+++++ .|.. +.+..+. ++|
T Consensus       329 ~~L~~LDLS~-N~Ls~--~~Gwh~KLGNIKtL~La~N~iE~LSGL~KL----YSLvnLDl~~N-~Ie~ldeV~~IG-~LP  399 (490)
T KOG1259|consen  329 PQLQLLDLSG-NLLAE--CVGWHLKLGNIKTLKLAQNKIETLSGLRKL----YSLVNLDLSSN-QIEELDEVNHIG-NLP  399 (490)
T ss_pred             ccceEeeccc-chhHh--hhhhHhhhcCEeeeehhhhhHhhhhhhHhh----hhheecccccc-chhhHHHhcccc-ccc
Confidence            5555555555 23322  112222344555555554421112233222    24555555555 3422 1111121 255


Q ss_pred             CCcEEeccC
Q 026356          157 ELESLNLTR  165 (240)
Q Consensus       157 ~L~~L~l~~  165 (240)
                      .|+.+.+.+
T Consensus       400 CLE~l~L~~  408 (490)
T KOG1259|consen  400 CLETLRLTG  408 (490)
T ss_pred             HHHHHhhcC
Confidence            555555554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=95.56  E-value=0.026  Score=53.09  Aligned_cols=98  Identities=13%  Similarity=0.171  Sum_probs=61.8

Q ss_pred             CCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHH
Q 026356           48 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK  127 (240)
Q Consensus        48 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~  127 (240)
                      ++|+.|++++ +.++....        ...++|+.|+++++ .++.-.. .   ..++|+.|++++| .++.-. ..+  
T Consensus       199 ~~L~~L~Ls~-N~LtsLP~--------~l~~nL~~L~Ls~N-~LtsLP~-~---l~~~L~~L~Ls~N-~L~~LP-~~l--  260 (754)
T PRK15370        199 EQITTLILDN-NELKSLPE--------NLQGNIKTLYANSN-QLTSIPA-T---LPDTIQEMELSIN-RITELP-ERL--  260 (754)
T ss_pred             cCCcEEEecC-CCCCcCCh--------hhccCCCEEECCCC-ccccCCh-h---hhccccEEECcCC-ccCcCC-hhH--
Confidence            4699999998 56663211        11268999999985 5553111 1   1347999999987 454211 111  


Q ss_pred             cCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCC
Q 026356          128 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMI  170 (240)
Q Consensus       128 ~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it  170 (240)
                       ..+|+.|+++++ .++.  +..  .-+++|+.|++++| .++
T Consensus       261 -~s~L~~L~Ls~N-~L~~--LP~--~l~~sL~~L~Ls~N-~Lt  296 (754)
T PRK15370        261 -PSALQSLDLFHN-KISC--LPE--NLPEELRYLSVYDN-SIR  296 (754)
T ss_pred             -hCCCCEEECcCC-ccCc--ccc--ccCCCCcEEECCCC-ccc
Confidence             248999999988 7763  211  11358999999986 554

>PLN03150 hypothetical protein; Provisional

Probab=95.55  E-value=0.022  Score=52.59  Aligned_cols=106  Identities=22%  Similarity=0.253  Sum_probs=66.4

Q ss_pred             EeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCC
Q 026356           26 IDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPE  105 (240)
Q Consensus        26 L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~  105 (240)
                      |+|+++...+ .....  +..+++|+.|++++ +.+....-..+     ..+++|+.|+++++ .++...-..++ .+++
T Consensus       423 L~L~~n~L~g-~ip~~--i~~L~~L~~L~Ls~-N~l~g~iP~~~-----~~l~~L~~LdLs~N-~lsg~iP~~l~-~L~~  491 (623)
T PLN03150        423 LGLDNQGLRG-FIPND--ISKLRHLQSINLSG-NSIRGNIPPSL-----GSITSLEVLDLSYN-SFNGSIPESLG-QLTS  491 (623)
T ss_pred             EECCCCCccc-cCCHH--HhCCCCCCEEECCC-CcccCcCChHH-----hCCCCCCEEECCCC-CCCCCCchHHh-cCCC
Confidence            7777776322 11122  34789999999999 45543222222     34589999999995 66644333444 4899


Q ss_pred             CCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCC
Q 026356          106 LKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNL  143 (240)
Q Consensus       106 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l  143 (240)
                      |+.|+++++ .++...-..+.....++..+++.++..+
T Consensus       492 L~~L~Ls~N-~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        492 LRILNLNGN-SLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             CCEEECcCC-cccccCChHHhhccccCceEEecCCccc
Confidence            999999987 4543322333333456778888877544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.45  E-value=0.013  Score=34.03  Aligned_cols=38  Identities=26%  Similarity=0.350  Sum_probs=26.2

Q ss_pred             CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCH
Q 026356          104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLD  145 (240)
Q Consensus       104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd  145 (240)
                      ++|++|+++++ .+++  +......+++|+.|+++++ .+++
T Consensus         1 ~~L~~L~l~~N-~i~~--l~~~l~~l~~L~~L~l~~N-~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNN-QITD--LPPELSNLPNLETLNLSNN-PISD   38 (44)
T ss_dssp             TT-SEEEETSS-S-SS--HGGHGTTCTTSSEEEETSS-CCSB
T ss_pred             CcceEEEccCC-CCcc--cCchHhCCCCCCEEEecCC-CCCC
Confidence            57889999877 6765  3332457889999999988 6764

...

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=95.41  E-value=0.014  Score=54.86  Aligned_cols=72  Identities=17%  Similarity=0.167  Sum_probs=36.0

Q ss_pred             CcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHH-----HHHHHHHhChhhhhHH--HhcCCccceeeccc
Q 026356          130 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILL-----GLFYIWSNNILLMSEF--IYHGIRFFQAVQIN  202 (240)
Q Consensus       130 ~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~-----~~~~l~~~~~~~l~~l--~~~~~~~L~~l~l~  202 (240)
                      ++|+.|+++++ .++.  +.   ...++|+.|+++++ .++.-     .+..+.-.... +..+  .+..++.|..++++
T Consensus       382 ~~L~~LdLs~N-~Lt~--LP---~l~s~L~~LdLS~N-~LssIP~l~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs  453 (788)
T PRK15387        382 SGLKELIVSGN-RLTS--LP---VLPSELKELMVSGN-RLTSLPMLPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLE  453 (788)
T ss_pred             cccceEEecCC-cccC--CC---CcccCCCEEEccCC-cCCCCCcchhhhhhhhhccCc-ccccChHHhhccCCCeEECC
Confidence            36677777776 4542  11   12356777887774 44421     11111111000 1111  23456677788888


Q ss_pred             CCCCCch
Q 026356          203 SSNGGDH  209 (240)
Q Consensus       203 ~~~~~~~  209 (240)
                      .+.+...
T Consensus       454 ~N~Ls~~  460 (788)
T PRK15387        454 GNPLSER  460 (788)
T ss_pred             CCCCCch
Confidence            7777654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.65  E-value=0.02  Score=46.87  Aligned_cols=116  Identities=13%  Similarity=0.120  Sum_probs=65.0

Q ss_pred             CCcHHHHHHHHh--cCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCC
Q 026356           90 KISDKGIEIISS--TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYV  167 (240)
Q Consensus        90 ~l~~~~~~~l~~--~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~  167 (240)
                      ++|...+...++  .+.+.+.|+..|| .++|-.+.   +.+|.|+.|.++-+ .|+.  +..+ ..|.+|++|.|.. +
T Consensus         3 kLTe~mV~~raK~sdl~~vkKLNcwg~-~L~DIsic---~kMp~lEVLsLSvN-kIss--L~pl-~rCtrLkElYLRk-N   73 (388)
T KOG2123|consen    3 KLTESMVYIRAKCSDLENVKKLNCWGC-GLDDISIC---EKMPLLEVLSLSVN-KISS--LAPL-QRCTRLKELYLRK-N   73 (388)
T ss_pred             hHHHHHHHHHHHhhHHHHhhhhcccCC-CccHHHHH---HhcccceeEEeecc-cccc--chhH-HHHHHHHHHHHHh-c
Confidence            355555554444  2345678888887 77776643   46788888888777 5542  2333 2477788887776 3


Q ss_pred             CCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCC---chhHHHHHHHhhcccccchhh
Q 026356          168 NMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGG---DHLAFAYIIETNTYKHGKEKH  228 (240)
Q Consensus       168 ~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~---~~~~~~~~~~~~~~~~L~~L~  228 (240)
                      .|.+..-.+            -+.++|.|+.|-+.-+.-.   ..-.-..++  ..+|+|++|+
T Consensus        74 ~I~sldEL~------------YLknlpsLr~LWL~ENPCc~~ag~nYR~~VL--R~LPnLkKLD  123 (388)
T KOG2123|consen   74 CIESLDELE------------YLKNLPSLRTLWLDENPCCGEAGQNYRRKVL--RVLPNLKKLD  123 (388)
T ss_pred             ccccHHHHH------------HHhcCchhhhHhhccCCcccccchhHHHHHH--HHcccchhcc
Confidence            554422111            2355566666655322222   111122334  5678888876

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.55  E-value=0.023  Score=45.78  Aligned_cols=90  Identities=20%  Similarity=0.297  Sum_probs=62.1

Q ss_pred             hhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcH-HHHHHHHhcCCCCCEEEecCCC--CCCHH
Q 026356           44 IPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISD-KGIEIISSTCPELKVFSIYWNV--RVTDI  120 (240)
Q Consensus        44 ~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~-~~~~~l~~~~~~L~~L~l~~~~--~l~~~  120 (240)
                      ++.+++|+.|.++.-+.-...++..++..+    |+|+++++++ +++.+ ..+..+. ..++|..|++..|+  ++++.
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~----P~l~~l~ls~-Nki~~lstl~pl~-~l~nL~~Ldl~n~~~~~l~dy  134 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKA----PNLKVLNLSG-NKIKDLSTLRPLK-ELENLKSLDLFNCSVTNLDDY  134 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhC----CceeEEeecC-Cccccccccchhh-hhcchhhhhcccCCccccccH
Confidence            357788999999973224455788888876    9999999999 68875 2333333 37789999999884  23332


Q ss_pred             HHHHHHHcCCcCCEEeccCC
Q 026356          121 GIQHLVKNCKHIIDLNLSGC  140 (240)
Q Consensus       121 ~~~~l~~~~~~L~~L~l~~c  140 (240)
                      - ..+...+|+|..|+-..+
T Consensus       135 r-e~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  135 R-EKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             H-HHHHHHhhhhcccccccc
Confidence            2 334456788888876544

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=93.88  E-value=0.098  Score=26.99  Aligned_cols=9  Identities=33%  Similarity=0.523  Sum_probs=3.4

Q ss_pred             CCEEeccCC
Q 026356          132 IIDLNLSGC  140 (240)
Q Consensus       132 L~~L~l~~c  140 (240)
                      |++|+++++
T Consensus         4 L~~LdL~~N   12 (28)
T smart00368        4 LRELDLSNN   12 (28)
T ss_pred             cCEEECCCC
Confidence            333333333

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=92.30  E-value=0.11  Score=49.95  Aligned_cols=19  Identities=5%  Similarity=-0.039  Sum_probs=13.1

Q ss_pred             ccccchhhhhhhhhhhccc
Q 026356          221 YKHGKEKHIIETIKTGQQL  239 (240)
Q Consensus       221 ~~~L~~L~l~~c~~~~d~~  239 (240)
                      .|+|+.|++..|..+.|.+
T Consensus       769 ~~~L~~l~l~~~~~~e~~i  787 (889)
T KOG4658|consen  769 APHLTSLSLVSCRLLEDII  787 (889)
T ss_pred             cCcccEEEEecccccccCC
Confidence            4667777777777776653

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=92.12  E-value=0.0058  Score=46.50  Aligned_cols=36  Identities=14%  Similarity=0.084  Sum_probs=18.3

Q ss_pred             cCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhh
Q 026356          191 HGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIE  231 (240)
Q Consensus       191 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  231 (240)
                      ..+.+|+.+.+..+.+...   ..  +...+..|++|+|.+
T Consensus       147 g~lt~lqil~lrdndll~l---pk--eig~lt~lrelhiqg  182 (264)
T KOG0617|consen  147 GKLTNLQILSLRDNDLLSL---PK--EIGDLTRLRELHIQG  182 (264)
T ss_pred             hhhcceeEEeeccCchhhC---cH--HHHHHHHHHHHhccc
Confidence            4445566665544433322   11  114455777777764

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.30  E-value=0.21  Score=43.15  Aligned_cols=54  Identities=17%  Similarity=0.242  Sum_probs=32.0

Q ss_pred             cCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhh
Q 026356          128 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLM  185 (240)
Q Consensus       128 ~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l  185 (240)
                      ++.+|..|++..+ .+  ..+..+..++.+|++|++++. .+....-..+..+....+
T Consensus       503 nm~nL~tLDL~nN-dl--q~IPp~LgnmtnL~hLeL~gN-pfr~Pr~~iLmkgT~aiL  556 (565)
T KOG0472|consen  503 NMRNLTTLDLQNN-DL--QQIPPILGNMTNLRHLELDGN-PFRQPRHQILMKGTAAIL  556 (565)
T ss_pred             hhhhcceeccCCC-ch--hhCChhhccccceeEEEecCC-ccCCCHHHHhccChHHHH
Confidence            5678888888877 44  233334456888888888883 554333333334444333

>PRK15386 type III secretion protein GogB; Provisional

Probab=91.21  E-value=0.22  Score=43.44  Aligned_cols=35  Identities=23%  Similarity=0.391  Sum_probs=17.2

Q ss_pred             CCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCC
Q 026356           49 HVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKI   91 (240)
Q Consensus        49 ~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l   91 (240)
                      +|++|.+++|.++...-     ...   .++|++|++++|..+
T Consensus        73 sLtsL~Lsnc~nLtsLP-----~~L---P~nLe~L~Ls~Cs~L  107 (426)
T PRK15386         73 ELTEITIENCNNLTTLP-----GSI---PEGLEKLTVCHCPEI  107 (426)
T ss_pred             CCcEEEccCCCCcccCC-----chh---hhhhhheEccCcccc
Confidence            46666666665432110     000   145666666666443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=90.81  E-value=0.09  Score=41.11  Aligned_cols=87  Identities=22%  Similarity=0.354  Sum_probs=54.0

Q ss_pred             CCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHH-HHHHHHcCCcCCEEeccCCCCCCHHHHH--HH
Q 026356           75 GSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIG-IQHLVKNCKHIIDLNLSGCKNLLDKSLQ--LI  151 (240)
Q Consensus        75 ~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~-~~~l~~~~~~L~~L~l~~c~~ltd~~l~--~l  151 (240)
                      ..++.|..|.++. +.|+.-. ..+....|+|..|.+.++ ++..-+ +..+ ..||+|++|.+-++ .+++..-.  .+
T Consensus        61 p~l~rL~tLll~n-NrIt~I~-p~L~~~~p~l~~L~LtnN-si~~l~dl~pL-a~~p~L~~Ltll~N-pv~~k~~YR~yv  135 (233)
T KOG1644|consen   61 PHLPRLHTLLLNN-NRITRID-PDLDTFLPNLKTLILTNN-SIQELGDLDPL-ASCPKLEYLTLLGN-PVEHKKNYRLYV  135 (233)
T ss_pred             CCccccceEEecC-Ccceeec-cchhhhccccceEEecCc-chhhhhhcchh-ccCCccceeeecCC-chhcccCceeEE
Confidence            3457788888887 5666422 133446788888888876 343322 3333 37888999888877 45443211  12


Q ss_pred             HHhCCCCcEEeccCC
Q 026356          152 ADNYQELESLNLTRY  166 (240)
Q Consensus       152 ~~~~~~L~~L~l~~c  166 (240)
                      ....|+|+.||+.+-
T Consensus       136 l~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  136 LYKLPSLRTLDFQKV  150 (233)
T ss_pred             EEecCcceEeehhhh
Confidence            224788999998773

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=88.40  E-value=0.21  Score=39.12  Aligned_cols=101  Identities=19%  Similarity=0.326  Sum_probs=63.3

Q ss_pred             EeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHH-HHHHHhcCC
Q 026356           26 IDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKG-IEIISSTCP  104 (240)
Q Consensus        26 L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~l~~~~~  104 (240)
                      +||+.|+....     ..+++.+.|..|.+.. +.|+...-. +.    ..+++|+.|.+.+ +.+..-+ +..++ .||
T Consensus        47 iDLtdNdl~~l-----~~lp~l~rL~tLll~n-NrIt~I~p~-L~----~~~p~l~~L~Ltn-Nsi~~l~dl~pLa-~~p  113 (233)
T KOG1644|consen   47 IDLTDNDLRKL-----DNLPHLPRLHTLLLNN-NRITRIDPD-LD----TFLPNLKTLILTN-NSIQELGDLDPLA-SCP  113 (233)
T ss_pred             ecccccchhhc-----ccCCCccccceEEecC-Ccceeeccc-hh----hhccccceEEecC-cchhhhhhcchhc-cCC
Confidence            66666553221     1245778899999888 666553221 11    2238899999988 4554433 34444 499


Q ss_pred             CCCEEEecCCCCCCHH-HHH-HHHHcCCcCCEEeccCC
Q 026356          105 ELKVFSIYWNVRVTDI-GIQ-HLVKNCKHIIDLNLSGC  140 (240)
Q Consensus       105 ~L~~L~l~~~~~l~~~-~~~-~l~~~~~~L~~L~l~~c  140 (240)
                      .|+.|.+-+++ +++. ..+ .+....|+|+.||...-
T Consensus       114 ~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  114 KLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ccceeeecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence            99999998874 4432 222 23456789999998865

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=86.02  E-value=0.3  Score=42.80  Aligned_cols=78  Identities=27%  Similarity=0.327  Sum_probs=37.3

Q ss_pred             CCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCH-HHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCC
Q 026356           78 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTD-IGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ  156 (240)
Q Consensus        78 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~  156 (240)
                      ++|+.|++++ +.|++  +..+.. ++.|+.|+++++. +++ .++.    .+++|+.++++++ .+++..-.. ...+.
T Consensus       118 ~~L~~L~ls~-N~I~~--i~~l~~-l~~L~~L~l~~N~-i~~~~~~~----~l~~L~~l~l~~n-~i~~ie~~~-~~~~~  186 (414)
T KOG0531|consen  118 VNLQVLDLSF-NKITK--LEGLST-LTLLKELNLSGNL-ISDISGLE----SLKSLKLLDLSYN-RIVDIENDE-LSELI  186 (414)
T ss_pred             hcchheeccc-ccccc--ccchhh-ccchhhheeccCc-chhccCCc----cchhhhcccCCcc-hhhhhhhhh-hhhcc
Confidence            5666666666 45543  112222 3346666666552 221 1111    1456666666666 444332211 23355


Q ss_pred             CCcEEeccCC
Q 026356          157 ELESLNLTRY  166 (240)
Q Consensus       157 ~L~~L~l~~c  166 (240)
                      .++.+.+.+.
T Consensus       187 ~l~~l~l~~n  196 (414)
T KOG0531|consen  187 SLEELDLGGN  196 (414)
T ss_pred             chHHHhccCC
Confidence            6666666653

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=85.86  E-value=0.46  Score=41.16  Aligned_cols=60  Identities=27%  Similarity=0.417  Sum_probs=28.5

Q ss_pred             CccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCH
Q 026356           79 DLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLD  145 (240)
Q Consensus        79 ~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd  145 (240)
                      +|+.|++++ +.+.... .. ...+++|+.|+++++ .+++..-..  ...++|+.|+++++ .+++
T Consensus       141 nL~~L~l~~-N~i~~l~-~~-~~~l~~L~~L~l~~N-~l~~l~~~~--~~~~~L~~L~ls~N-~i~~  200 (394)
T COG4886         141 NLKELDLSD-NKIESLP-SP-LRNLPNLKNLDLSFN-DLSDLPKLL--SNLSNLNNLDLSGN-KISD  200 (394)
T ss_pred             hcccccccc-cchhhhh-hh-hhccccccccccCCc-hhhhhhhhh--hhhhhhhheeccCC-cccc
Confidence            566666665 3443321 01 123666666666655 343322211  13455666666666 4443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=84.63  E-value=0.69  Score=40.02  Aligned_cols=34  Identities=24%  Similarity=0.198  Sum_probs=14.9

Q ss_pred             CCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCC
Q 026356           78 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWN  114 (240)
Q Consensus        78 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~  114 (240)
                      ++|+.|+++.+ .+++....  ....++|+.|+++++
T Consensus       163 ~~L~~L~l~~N-~l~~l~~~--~~~~~~L~~L~ls~N  196 (394)
T COG4886         163 PNLKNLDLSFN-DLSDLPKL--LSNLSNLNNLDLSGN  196 (394)
T ss_pred             ccccccccCCc-hhhhhhhh--hhhhhhhhheeccCC
Confidence            55555555553 43332211  112444555555543

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=84.59  E-value=2.4  Score=38.11  Aligned_cols=87  Identities=17%  Similarity=0.235  Sum_probs=56.9

Q ss_pred             CCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCC--CCHHHHHHHHHcCCcCCEEeccCCCCCCH-----HH
Q 026356           75 GSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVR--VTDIGIQHLVKNCKHIIDLNLSGCKNLLD-----KS  147 (240)
Q Consensus        75 ~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~--l~~~~~~~l~~~~~~L~~L~l~~c~~ltd-----~~  147 (240)
                      .+.+.+.+++++.-.-..-.++..+++..|+|..|+|+++..  -++..+.++  ....|++|-+.|++-.++     +.
T Consensus       215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~tf~~~s~y  292 (585)
T KOG3763|consen  215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTTFSDRSEY  292 (585)
T ss_pred             cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccchhhhHHH
Confidence            455888888888843334567778888889999999987621  223333333  345788888888853332     33


Q ss_pred             HHHHHHhCCCCcEEec
Q 026356          148 LQLIADNYQELESLNL  163 (240)
Q Consensus       148 l~~l~~~~~~L~~L~l  163 (240)
                      +.++.+..|.|..||=
T Consensus       293 v~~i~~~FPKL~~LDG  308 (585)
T KOG3763|consen  293 VSAIRELFPKLLRLDG  308 (585)
T ss_pred             HHHHHHhcchheeecC
Confidence            4456667888888773

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=84.57  E-value=0.61  Score=20.92  Aligned_cols=7  Identities=29%  Similarity=0.662  Sum_probs=2.5

Q ss_pred             cEEeccC
Q 026356          159 ESLNLTR  165 (240)
Q Consensus       159 ~~L~l~~  165 (240)
                      +.|++++
T Consensus         4 ~~L~l~~   10 (17)
T PF13504_consen    4 RTLDLSN   10 (17)
T ss_dssp             SEEEETS
T ss_pred             CEEECCC
Confidence            3333333

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=82.56  E-value=0.64  Score=34.36  Aligned_cols=37  Identities=27%  Similarity=0.276  Sum_probs=18.9

Q ss_pred             HHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccC
Q 026356          126 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR  165 (240)
Q Consensus       126 ~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~  165 (240)
                      ...+|-++.|+++++ .|+|...+ ++ .++.|+.|++++
T Consensus        73 t~kf~t~t~lNl~~n-eisdvPeE-~A-am~aLr~lNl~~  109 (177)
T KOG4579|consen   73 TIKFPTATTLNLANN-EISDVPEE-LA-AMPALRSLNLRF  109 (177)
T ss_pred             hhccchhhhhhcchh-hhhhchHH-Hh-hhHHhhhccccc
Confidence            334445555555555 45544444 32 255566666655

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=82.10  E-value=0.59  Score=34.53  Aligned_cols=58  Identities=16%  Similarity=0.202  Sum_probs=29.8

Q ss_pred             CCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCC
Q 026356           78 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGC  140 (240)
Q Consensus        78 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c  140 (240)
                      .+|+..++++ +.+.+. -..+....|.++.|+++++ .++|.... + ..+|.|++|+++.+
T Consensus        53 ~el~~i~ls~-N~fk~f-p~kft~kf~t~t~lNl~~n-eisdvPeE-~-Aam~aLr~lNl~~N  110 (177)
T KOG4579|consen   53 YELTKISLSD-NGFKKF-PKKFTIKFPTATTLNLANN-EISDVPEE-L-AAMPALRSLNLRFN  110 (177)
T ss_pred             ceEEEEeccc-chhhhC-CHHHhhccchhhhhhcchh-hhhhchHH-H-hhhHHhhhcccccC
Confidence            4555556555 222211 1133344556666666654 45554444 2 25566777777666

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	240
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-20
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-17
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-09
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-17
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-15
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-14
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-14
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-13
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-13
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-17
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-16
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-16
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-13
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-13
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-12
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-13
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	7e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-04

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 88.0 bits (218), Expect = 1e-20
 Identities = 27/142 (19%), Positives = 62/142 (43%), Gaps = 9/142 (6%)

Query: 28  LREMNNAGNRL--VAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNL 85
           L+ ++  G RL      ++ +  ++  +NL       +  L+ L + C      L+ LNL
Sbjct: 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC----SRLDELNL 175

Query: 86  NGCQKISDKGIE-IISSTCPELKVFSIY-WNVRVTDIGIQHLVKNCKHIIDLNLSGCKNL 143
           + C   ++K ++  ++     +   ++  +   +    +  LV+ C +++ L+LS    L
Sbjct: 176 SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML 235

Query: 144 LDKSLQLIADNYQELESLNLTR 165
            +   Q        L+ L+L+R
Sbjct: 236 KNDCFQEFF-QLNYLQHLSLSR 256

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 78.8 bits (194), Expect = 2e-17
 Identities = 28/124 (22%), Positives = 60/124 (48%), Gaps = 8/124 (6%)

Query: 48  RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELK 107
             V+ ++L  +  IE   L  + ++C      L++L+L G  ++SD  +  ++     L 
Sbjct: 93  FRVQHMDLSNSV-IEVSTLHGILSQC----SKLQNLSLEGL-RLSDPIVNTLAK-NSNLV 145

Query: 108 VFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQ-LIADNYQELESLNLTRY 166
             ++      ++  +Q L+ +C  + +LNLS C +  +K +Q  +A   + +  LNL+ Y
Sbjct: 146 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205

Query: 167 VNMI 170
              +
Sbjct: 206 RKNL 209

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 55.3 bits (133), Expect = 3e-09
 Identities = 23/147 (15%), Positives = 51/147 (34%), Gaps = 26/147 (17%)

Query: 24  KVIDLREMNNAGNRLVAALSIPRYRHVREINLE-FAQDIEDRHLELLKTKC--------- 73
             ++L    +   + V          + ++NL  + ++++   L  L  +C         
Sbjct: 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 230

Query: 74  ------------LGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIG 121
                          L  L+ L+L+ C  I  + +  +    P LK   ++    V D  
Sbjct: 231 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE-IPTLKTLQVFGI--VPDGT 287

Query: 122 IQHLVKNCKHIIDLNLSGCKNLLDKSL 148
           +Q L +   H + +N S    +   ++
Sbjct: 288 LQLLKEALPH-LQINCSHFTTIARPTI 313

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 45.6 bits (108), Expect = 5e-06
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 4/97 (4%)

Query: 69  LKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKN 128
           L     G L     +     +   D+ +    S    ++   +  +V +    +  ++  
Sbjct: 59  LHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSV-IEVSTLHGILSQ 116

Query: 129 CKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR 165
           C  + +L+L G + L D  +  +A N   L  LNL+ 
Sbjct: 117 CSKLQNLSLEGLR-LSDPIVNTLAKN-SNLVRLNLSG 151

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 80.7 bits (199), Expect = 1e-17
 Identities = 29/153 (18%), Positives = 57/153 (37%), Gaps = 13/153 (8%)

Query: 46  RYRHVREINLEFAQDIEDRHLELLK---------TKCLGSLQDLESLNLNGCQKISDKGI 96
           R+  VR + L+      D +L                  S   LE + L     ++D  +
Sbjct: 64  RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCL 122

Query: 97  EIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCK--NLLDKSLQLIADN 154
           E+I+ +    KV  +      +  G+  +   C+++ +L+L      ++    L    D 
Sbjct: 123 ELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182

Query: 155 YQELESLNLTRYVNMI-LLGLFYIWSNNILLMS 186
           Y  L SLN++   + +    L  + +    L S
Sbjct: 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKS 215

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 72.6 bits (178), Expect = 6e-15
 Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 8/103 (7%)

Query: 61  IEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDI 120
             D     +   C    +DL  L+L+G   ++DK  E I +   ++++ S+ +    +D+
Sbjct: 419 PLDIGFGAIVEHC----KDLRRLSLSGL--LTDKVFEYIGTYAKKMEMLSVAF-AGDSDL 471

Query: 121 GIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNL 163
           G+ H++  C  +  L +  C    DK+L   A   + + SL +
Sbjct: 472 GMHHVLSGCDSLRKLEIRDC-PFGDKALLANASKLETMRSLWM 513

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 70.3 bits (172), Expect = 3e-14
 Identities = 24/123 (19%), Positives = 52/123 (42%), Gaps = 14/123 (11%)

Query: 54  NLEFAQDIEDRHLELLKTKCLG----SLQDLESLNLNGCQKISDKGIEIISSTCPELKVF 109
            L     IED  LE+L + C       +   E   +     ++++G+  +S  CP+L+  
Sbjct: 318 RLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV 377

Query: 110 SIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCK---------NLLDKSLQLIADNYQELES 160
            +Y+  ++T+  +  + +N  ++    L   +           LD     I ++ ++L  
Sbjct: 378 -LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRR 436

Query: 161 LNL 163
           L+L
Sbjct: 437 LSL 439

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 69.5 bits (170), Expect = 6e-14
 Identities = 23/149 (15%), Positives = 53/149 (35%), Gaps = 16/149 (10%)

Query: 24  KVIDLREMNNAGNRLVAALSIPRYRHVREI-NLEFAQDIEDRHLELLKTKCLGSLQDLES 82
           + +            V +         +E+  L    D    +L  + + C      L +
Sbjct: 238 EELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSR----LTT 293

Query: 83  LNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKN 142
           LNL+    +    +  +   CP+L+   +   +   D G++ L   CK + +L +   + 
Sbjct: 294 LNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYI--EDAGLEVLASTCKDLRELRVFPSEP 350

Query: 143 LL--------DKSLQLIADNYQELESLNL 163
            +        ++ L  ++    +LES+  
Sbjct: 351 FVMEPNVALTEQGLVSVSMGCPKLESVLY 379

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 68.8 bits (168), Expect = 1e-13
 Identities = 22/131 (16%), Positives = 46/131 (35%), Gaps = 9/131 (6%)

Query: 48  RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQ--KISDKGIEIISSTCPE 105
           ++ + + L   +      L  +   C    ++L+ L+L       +S   +     T   
Sbjct: 130 KNFKVLVLSSCEGFSTDGLAAIAATC----RNLKELDLRESDVDDVSGHWLSHFPDTYTS 185

Query: 106 LKVFSIYW-NVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLT 164
           L   +I      V+   ++ LV  C ++  L L+    L    L  +     +LE L   
Sbjct: 186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK--LATLLQRAPQLEELGTG 243

Query: 165 RYVNMILLGLF 175
            Y   +   ++
Sbjct: 244 GYTAEVRPDVY 254

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 68.0 bits (166), Expect = 2e-13
 Identities = 31/149 (20%), Positives = 61/149 (40%), Gaps = 17/149 (11%)

Query: 23  PKVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLES 82
            ++  L    +A    + A+       +  +NL +A       ++LL          L+ 
Sbjct: 265 KELRCLSGFWDAVPAYLPAVY-SVCSRLTTLNLSYATVQSYDLVKLLC-----QCPKLQR 318

Query: 83  LNLNGCQKISDKGIEIISSTCPELKV--------FSIYWNVRVTDIGIQHLVKNCKHIID 134
           L +     I D G+E+++STC +L+         F +  NV +T+ G+  +   C  +  
Sbjct: 319 LWV--LDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLES 376

Query: 135 LNLSGCKNLLDKSLQLIADNYQELESLNL 163
           + L  C+ + + +L  IA N   +    L
Sbjct: 377 V-LYFCRQMTNAALITIARNRPNMTRFRL 404

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 64.5 bits (157), Expect = 3e-12
 Identities = 17/130 (13%), Positives = 43/130 (33%), Gaps = 5/130 (3%)

Query: 48  RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELK 107
             + E+            +    +  L   ++L  L+  G        +  + S C  L 
Sbjct: 235 PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS--GFWDAVPAYLPAVYSVCSRLT 292

Query: 108 VFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYV 167
             ++ +   V    +  L+  C  +  L +     + D  L+++A   ++L  L +    
Sbjct: 293 TLNLSY-ATVQSYDLVKLLCQCPKLQRLWV--LDYIEDAGLEVLASTCKDLRELRVFPSE 349

Query: 168 NMILLGLFYI 177
             ++     +
Sbjct: 350 PFVMEPNVAL 359

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 64.1 bits (156), Expect = 5e-12
 Identities = 31/149 (20%), Positives = 59/149 (39%), Gaps = 16/149 (10%)

Query: 24  KVIDLRE--MNNAGNRLVAALSIPRYRHVREINLE-FAQDIEDRHLELLKTKCLGSLQDL 80
           K +DLRE  +++     ++      Y  +  +N+   A ++    LE L T+C     +L
Sbjct: 159 KELDLRESDVDDVSGHWLSHFP-DTYTSLVSLNISCLASEVSFSALERLVTRC----PNL 213

Query: 81  ESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTD----IGIQHLVKNCKHIIDLN 136
           +SL LN    +  + +  +    P+L+                 G+   +  CK +    
Sbjct: 214 KSLKLNRA--VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKEL--RC 269

Query: 137 LSGCKNLLDKSLQLIADNYQELESLNLTR 165
           LSG  + +   L  +      L +LNL+ 
Sbjct: 270 LSGFWDAVPAYLPAVYSVCSRLTTLNLSY 298

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 59.9 bits (145), Expect = 1e-10
 Identities = 17/120 (14%), Positives = 39/120 (32%), Gaps = 16/120 (13%)

Query: 55  LEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQ---------KISDKGIEIISSTCPE 105
           L F + + +  L  +         ++    L   +         +  D G   I   C +
Sbjct: 378 LYFCRQMTNAALITIARNR----PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKD 433

Query: 106 LKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR 165
           L+  S+   +  TD   +++    K +  L+++      D  +  +      L  L +  
Sbjct: 434 LRRLSLSGLL--TDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRD 490

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 7/99 (7%)

Query: 61  IEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDI 120
           + D+  E + T      + +E L++      SD G+  + S C  L+   I       D 
Sbjct: 443 LTDKVFEYIGTYA----KKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDC-PFGDK 496

Query: 121 GIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELE 159
            +       + +  L +S C ++   + +L+     +L 
Sbjct: 497 ALLANASKLETMRSLWMSSC-SVSFGACKLLGQKMPKLN 534

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 80.4 bits (198), Expect = 1e-17
 Identities = 20/124 (16%), Positives = 43/124 (34%), Gaps = 3/124 (2%)

Query: 41  ALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLN-GCQKISDKGIEII 99
              +      R + L+  + I D  L+      L   + L           ++D G+  I
Sbjct: 399 GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI 458

Query: 100 SSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELE 159
               P ++   +   V  +D G+    + C ++  L + GC    ++++         L 
Sbjct: 459 GQYSPNVRWMLL-GYVGESDEGLMEFSRGCPNLQKLEMRGC-CFSERAIAAAVTKLPSLR 516

Query: 160 SLNL 163
            L +
Sbjct: 517 YLWV 520

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 75.4 bits (185), Expect = 6e-16
 Identities = 28/154 (18%), Positives = 62/154 (40%), Gaps = 22/154 (14%)

Query: 24  KVIDLREMNNAGNRLVAALSIPRY----RHVREINLEFAQDIEDRHLELLKTKCLGSLQD 79
            ++  R++   G   +    +P        +R+++L +A    + H  L++        +
Sbjct: 265 NLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQ-----KCPN 319

Query: 80  LESLNLNGCQKISDKGIEIISSTCPELKVFSIYW----------NVRVTDIGIQHLVKNC 129
           LE L       I D+G+E+++  C +LK   I               V+  G+  L + C
Sbjct: 320 LEVLETRNV--IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC 377

Query: 130 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNL 163
           + +  + +    ++ ++SL+ I    + L    L
Sbjct: 378 QELEYMAVY-VSDITNESLESIGTYLKNLCDFRL 410

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 75.0 bits (184), Expect = 9e-16
 Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 13/130 (10%)

Query: 46  RYRHVREINLEFAQDIEDRHLELLK---------TKCLGSLQDLESLNLNGCQKISDKGI 96
           R+ ++R + L+        +L             T+   +L+ L+S++      +SD  +
Sbjct: 71  RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDL 129

Query: 97  EIIS-STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCK--NLLDKSLQLIAD 153
           + ++ +   +L+   +      T  G+  +V +C+ I  L +          K L  +A 
Sbjct: 130 DRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189

Query: 154 NYQELESLNL 163
           +   LE LN 
Sbjct: 190 HNTSLEVLNF 199

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 67.7 bits (165), Expect = 3e-13
 Identities = 22/167 (13%), Positives = 61/167 (36%), Gaps = 9/167 (5%)

Query: 24  KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESL 83
           K +  R M    +  +  L+  R   +  + L+         L  + T C    + +++L
Sbjct: 115 KSVHFRRMIV-SDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHC----RKIKTL 169

Query: 84  NLNGCQKI--SDKGIEIISSTCPELKVFSIYWN--VRVTDIGIQHLVKNCKHIIDLNLSG 139
            +          K +  ++     L+V + Y     +++   ++ + +NC+ ++ + +  
Sbjct: 170 LMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD 229

Query: 140 CKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMS 186
            + L        A N +E    +L   + M    +  ++   +  + 
Sbjct: 230 FEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLG 276

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 67.3 bits (164), Expect = 4e-13
 Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 7/106 (6%)

Query: 61  IEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDI 120
           + D  L  +         ++  + L      SD+G+   S  CP L+   +      ++ 
Sbjct: 450 LTDLGLSYIGQYS----PNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGC-CFSER 503

Query: 121 GIQHLVKNCKHIIDLNLSGCK-NLLDKSLQLIADNYQELESLNLTR 165
            I   V     +  L + G + ++  + L  +A  Y  +E +   R
Sbjct: 504 AIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRR 549

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 63.0 bits (153), Expect = 9e-12
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 13/111 (11%)

Query: 61  IEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVF---SIYWNVRV 117
           +  R L  L   C    Q+LE + +     I+++ +E I +    L  F    +    R+
Sbjct: 365 VSQRGLIALAQGC----QELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREERI 419

Query: 118 TDI----GIQHLVKNCKHIIDLNLS-GCKNLLDKSLQLIADNYQELESLNL 163
           TD+    G++ L+  CK +           L D  L  I      +  + L
Sbjct: 420 TDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLL 470

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 62.7 bits (152), Expect = 1e-11
 Identities = 20/166 (12%), Positives = 57/166 (34%), Gaps = 21/166 (12%)

Query: 26  IDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDR-------HLELLKTKCLG--- 75
             + E      + +  ++    R +  + +   + +E         +LE      L    
Sbjct: 199 FYMTEFAKISPKDLETIA-RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDI 257

Query: 76  -------SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKN 128
                  +L     L   G   +    + I+     +++   + + +  T+     L++ 
Sbjct: 258 GMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCT-LIQK 316

Query: 129 CKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGL 174
           C ++  L       + D+ L+++A   ++L+ L + R  +   +  
Sbjct: 317 CPNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIERGADEQGMED 360

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 61.5 bits (149), Expect = 3e-11
 Identities = 19/127 (14%), Positives = 38/127 (29%), Gaps = 23/127 (18%)

Query: 60  DIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTD 119
           + + + L  L      SL+ L +  +    KIS K +E I+  C  L    +     +  
Sbjct: 178 EKDGKWLHELAQHNT-SLEVL-NFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL 235

Query: 120 IGIQHLVKNCKHI---------------------IDLNLSGCKNLLDKSLQLIADNYQEL 158
           +G      N +                         L   G   +    + ++     ++
Sbjct: 236 VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQI 295

Query: 159 ESLNLTR 165
             L+L  
Sbjct: 296 RKLDLLY 302

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 58.4 bits (141), Expect = 4e-10
 Identities = 15/112 (13%), Positives = 38/112 (33%), Gaps = 7/112 (6%)

Query: 48  RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELK 107
            +VR + L +     D  L            +L+ L + GC   S++ I    +  P L+
Sbjct: 463 PNVRWMLLGYVG-ESDEGLMEF----SRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLR 516

Query: 108 VFSIY-WNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQEL 158
              +  +   +T   +  + +   +I  +       +  +      ++   +
Sbjct: 517 YLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHI 568

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 8/61 (13%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 74  LGSLQDLESLNLNGCQ-KISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHI 132
           +  L  L  L + G +  ++ + +  ++     +++        V   G    +++  HI
Sbjct: 509 VTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHI 568

Query: 133 I 133
           +
Sbjct: 569 L 569

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 65.2 bits (159), Expect = 2e-13
 Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 4/96 (4%)

Query: 60  DIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS---TCPELKVFSIYWNVR 116
           D  D  +  +    +  LQ +E + L  C  I D  +E +S        +    I     
Sbjct: 67  DATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGN 126

Query: 117 VTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIA 152
           VTD GI  L  + +++  L LS    + +K   + A
Sbjct: 127 VTDKGIIAL-HHFRNLKYLFLSDLPGVKEKEKIVQA 161

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 9/67 (13%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 114 NVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIA---DNYQELESLNLTRYVNMI 170
           +  +  IG  H ++  +++  + L  C  + D  L+ ++   +  + +  + +    N+ 
Sbjct: 70  DSCIMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128

Query: 171 LLGLFYI 177
             G+  +
Sbjct: 129 DKGIIAL 135

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 1e-07
 Identities = 42/274 (15%), Positives = 81/274 (29%), Gaps = 58/274 (21%)

Query: 5   EEKVKAAEEEETWSKETVPKVI-----DLREMNNAGNRLVAALSIPRYRHVREINLEFAQ 59
           +        +E   K  + K +     DL       N    ++ I           +  +
Sbjct: 292 DHHSMTLTPDE--VKSLLLKYLDCRPQDLPREVLTTNPRRLSI-IAESIRDGLATWDNWK 348

Query: 60  DIE-DRHLELLKTKCLGSLQDLESLNLNGCQK---ISDKGIEIISSTCPELKVFSIYWN- 114
            +  D+   ++++    SL  LE            +      I     P   + S+ W  
Sbjct: 349 HVNCDKLTTIIES----SLNVLEPAEYRKMFDRLSVFPPSAHI-----PT-ILLSLIWFD 398

Query: 115 --VRVTDIGIQHLV------KNCK------HIIDLNLSGCKNLLDKSL-QLIADNYQELE 159
                  + +  L       K  K        I L L   K   + +L + I D+Y   +
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK-VKLENEYALHRSIVDHYNIPK 457

Query: 160 SLNLTRYVNMILLGLFY-------IWSNNILLMSEF--IYHGIRFFQAVQINSSNGGDHL 210
           + +    +   L   FY           +   M+ F  ++   RF +  +I         
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ-KIRHD-STAWN 515

Query: 211 AFAYIIET----NTYKHGKEKHIIETIKTGQQLL 240
           A   I+ T      YK     +I +     ++L+
Sbjct: 516 ASGSILNTLQQLKFYK----PYICDNDPKYERLV 545

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 1e-07
 Identities = 31/188 (16%), Positives = 55/188 (29%), Gaps = 43/188 (22%)

Query: 15  ETWSKETVPKVIDLREMNNAGNRL------VAALSIPRYRHVREINLEFAQDIEDRHLEL 68
                E     +  R      +RL       A  ++ R +   ++               
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL--------------- 140

Query: 69  LKTKCLGSLQDLESLNLNG---CQKISDKGIEIISSTCPELKV-----FSIYW----NVR 116
              + L  L+  +++ ++G     K       +    C   KV     F I+W    N  
Sbjct: 141 --RQALLELRPAKNVLIDGVLGSGKTW-----VALDVCLSYKVQCKMDFKIFWLNLKNCN 193

Query: 117 VTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESL-NLTRYVNMILLGLF 175
             +  ++ L K   + ID N +   +        I     EL  L     Y N  LL L 
Sbjct: 194 SPETVLEMLQKLL-YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC-LLVLL 251

Query: 176 YIWSNNIL 183
            + +    
Sbjct: 252 NVQNAKAW 259

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.8 bits (117), Expect = 5e-07
 Identities = 28/153 (18%), Positives = 61/153 (39%), Gaps = 18/153 (11%)

Query: 24  KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESL 83
           + +D++      +   A L +P  +  + + L+    + +   + + +  L     L  L
Sbjct: 6   QSLDIQC-EELSDARWAEL-LPLLQQCQVVRLDDCG-LTEARCKDI-SSALRVNPALAEL 61

Query: 84  NLNGCQKISDKGIEIIS----STCPELKVFSIYWNVRVTDIGIQHL---VKNCKHIIDLN 136
           NL   + + D G+  +     +   +++  S+     +T  G   L   ++    + +L+
Sbjct: 62  NLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELH 119

Query: 137 LSGCKNLLDKSLQLIADNYQE----LESLNLTR 165
           LS    L D  LQL+ +   +    LE L L  
Sbjct: 120 LSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEY 151

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 15/101 (14%), Positives = 44/101 (43%), Gaps = 14/101 (13%)

Query: 74  LGSLQDLESLNLNGCQKISDKGIEIIS----STCPELKVFSIYWNVRVTDIGIQHL---V 126
           L +L  L+ L+L+    + D G++++          L+   + +   ++    + L   +
Sbjct: 109 LRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVL 166

Query: 127 KNCKHIIDLNLSGCKNLLDKSLQLIAD----NYQELESLNL 163
           +      +L +S   ++ +  ++++      +  +LE+L L
Sbjct: 167 RAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKL 206

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 14/93 (15%), Positives = 37/93 (39%), Gaps = 10/93 (10%)

Query: 78  QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV---KNCKHIID 134
            D++SL++   + +SD     +     + +V  +     +T+   + +    +    + +
Sbjct: 3   LDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAE 60

Query: 135 LNLSGCKNLLDKSLQLIAD----NYQELESLNL 163
           LNL     L D  +  +         +++ L+L
Sbjct: 61  LNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSL 92

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 25/152 (16%), Positives = 48/152 (31%), Gaps = 17/152 (11%)

Query: 24  KVIDLREMNNAGNRLVAALS--IPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLE 81
           + + L       +     L   +     +RE+ L   + + D  +  L    L     L 
Sbjct: 202 EALKLES-CGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLR 259

Query: 82  SLNLNGCQKISDKGIEIISS---TCPELKVFSIYWNVRVTDIGIQHLV----KNCKHIID 134
           +L +  C  I+ KG   +         LK  S+  N  + D G + L     +    +  
Sbjct: 260 TLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLES 317

Query: 135 LNLSGCKNLLDKSLQLIAD---NYQELESLNL 163
           L +  C +         +      + L  L +
Sbjct: 318 LWVKSC-SFTAACCSHFSSVLAQNRFLLELQI 348

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 13/94 (13%)

Query: 80  LESLNLNGCQKISDKGIEIISS---TCPELKVFSIYWNVRVTDIGIQHLVKNCKH----I 132
           LE+L L  C  ++      +     +   L+  ++  N ++ D+G+  L     H    +
Sbjct: 201 LEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRL 258

Query: 133 IDLNLSGCKNLLDKSLQLIAD---NYQELESLNL 163
             L +  C  +  K    +       + L+ L+L
Sbjct: 259 RTLWIWEC-GITAKGCGDLCRVLRAKESLKELSL 291

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 17/122 (13%), Positives = 42/122 (34%), Gaps = 18/122 (14%)

Query: 51  REINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII-----SSTCPE 105
             ++       E ++           L  L  LNL G + ++     ++     S     
Sbjct: 50  ELLDH-LFFHYEFQNQRFS----AEVLSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHA- 102

Query: 106 LKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD----NYQELESL 161
           L   ++    ++   G++ L+        L L    +L  ++ + + D    +  ++ +L
Sbjct: 103 LDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTL 160

Query: 162 NL 163
            L
Sbjct: 161 RL 162

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 28/114 (24%)

Query: 72  KCLGSLQDLESLNLNGCQKISDKGIEIISS------------TCPELKVFSIYWNVRVTD 119
             L     LE L L+    +  +    I+               P L+      N R+ +
Sbjct: 116 DFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLEN 173

Query: 120 IGIQHL---VKNCKHIIDLNLS-------GCKNLLDKSLQLIADNYQELESLNL 163
             ++      ++ + +  + +        G ++LL + L       QEL+ L+L
Sbjct: 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA----YCQELKVLDL 223

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 14/96 (14%), Positives = 38/96 (39%), Gaps = 14/96 (14%)

Query: 80  LESLNLNGCQKISDKGIEIISS---TCPELKVFSIYWNV--RVTDIGIQHL---VKNCKH 131
           + SLNL     +    +E +     +   L+   + +++   ++    + L     N + 
Sbjct: 227 VVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK 285

Query: 132 IIDLNLSGCKNLLDKSLQLIADNYQE----LESLNL 163
           II ++ +G + +       I++  +E     +  +L
Sbjct: 286 IILVDKNGKE-IHPSHSIPISNLIRELSGKADVPSL 320

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 25/138 (18%), Positives = 44/138 (31%), Gaps = 18/138 (13%)

Query: 38  LVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIE 97
           +    SIP    V  ++L     +       L      +   + SLNL+G   +  K  +
Sbjct: 14  VEEFTSIPH--GVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSD 69

Query: 98  IIS----STCPELKVFSIYWNVRVTDIGIQHLVK----NCKHIIDLNLSGCKNLLDKSLQ 149
            +     +    +   ++  N  ++      LVK        I  L+L    +   KS  
Sbjct: 70  ELVQILAAIPANVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSS 127

Query: 150 LIAD----NYQELESLNL 163
                       + SLNL
Sbjct: 128 EFKQAFSNLPASITSLNL 145

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	240
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.76
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.75
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.74
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.73
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.72
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.68
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.67
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.67
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.67
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.67
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.66
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.65
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.65
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.64
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.54
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.5
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.49
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.39
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	99.15
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.01
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.01
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.98
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.98
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.94
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.91
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.9
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.89
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.88
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.85
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.85
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.81
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.79
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.79
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.78
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.78
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.78
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.77
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.77
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.76
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.74
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.74
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.73
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.7
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.7
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.67
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.66
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.66
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.66
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.65
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.64
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.63
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.62
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.61
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.61
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.6
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.6
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.58
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.57
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.57
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.55
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.55
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.54
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.54
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.54
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.52
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.52
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.5
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.49
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.49
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.48
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.47
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.47
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.46
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.45
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.45
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.44
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.43
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.42
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.41
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.41
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.41
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.4
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.4
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.4
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.38
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.38
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.38
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.37
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.34
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.34
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.32
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.31
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.31
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.3
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.27
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.23
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.22
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.17
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.17
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.17
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.14
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.08
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.03
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.03
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.01
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.01
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.01
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.01
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.95
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.85
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.85
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.74
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.74
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.69
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.68
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.61
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.55
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.55
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.53
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.52
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.41
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.39
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.37
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.34
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.31
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.21
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.18
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.03
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.72
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	96.65
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.62
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.5
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.46
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.17
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.07
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	95.31
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	95.19
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	95.12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	94.76
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	91.02

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.76  E-value=1.2e-17  Score=139.89  Aligned_cols=182  Identities=19%  Similarity=0.295  Sum_probs=122.5

Q ss_pred             EeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCC
Q 026356           26 IDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPE  105 (240)
Q Consensus        26 L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~  105 (240)
                      |++++|. +....+.... ..+++|++|++++| .+++.....++.     +++|++|++++|..+++.++..+...+++
T Consensus        98 L~L~~~~-l~~~~~~~~~-~~~~~L~~L~L~~~-~l~~~~~~~l~~-----~~~L~~L~L~~~~~l~~~~l~~~~~~~~~  169 (336)
T 2ast_B           98 MDLSNSV-IEVSTLHGIL-SQCSKLQNLSLEGL-RLSDPIVNTLAK-----NSNLVRLNLSGCSGFSEFALQTLLSSCSR  169 (336)
T ss_dssp             EECTTCE-ECHHHHHHHH-TTBCCCSEEECTTC-BCCHHHHHHHTT-----CTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             EEccCCC-cCHHHHHHHH-hhCCCCCEEeCcCc-ccCHHHHHHHhc-----CCCCCEEECCCCCCCCHHHHHHHHhcCCC
Confidence            7777776 4544444433 46778888888875 477666665533     47788888888767777777666666788


Q ss_pred             CCEEEecCCCCCCHHHHHHHHHcCC-cCCEEeccCCC-CCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChh
Q 026356          106 LKVFSIYWNVRVTDIGIQHLVKNCK-HIIDLNLSGCK-NLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNIL  183 (240)
Q Consensus       106 L~~L~l~~~~~l~~~~~~~l~~~~~-~L~~L~l~~c~-~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~  183 (240)
                      |++|++++|..+++.++..+...++ +|++|++++|. .+++..+..+..++++|+.|++++|..+++.++..       
T Consensus       170 L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-------  242 (336)
T 2ast_B          170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-------  242 (336)
T ss_dssp             CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG-------
T ss_pred             CCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH-------
Confidence            8888888776777777777777777 88888888875 57777776666677888888888775466644332       


Q ss_pred             hhhHHHhcCCccceeecccCCC-CCchhHHHHHHHhhcccccchhhhhhh
Q 026356          184 LMSEFIYHGIRFFQAVQINSSN-GGDHLAFAYIIETNTYKHGKEKHIIET  232 (240)
Q Consensus       184 ~l~~l~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~c  232 (240)
                            +..++.|+.++++.+. +.+. ++.. +  ..+++|+.|++.+|
T Consensus       243 ------l~~l~~L~~L~l~~~~~~~~~-~~~~-l--~~~~~L~~L~l~~~  282 (336)
T 2ast_B          243 ------FFQLNYLQHLSLSRCYDIIPE-TLLE-L--GEIPTLKTLQVFGI  282 (336)
T ss_dssp             ------GGGCTTCCEEECTTCTTCCGG-GGGG-G--GGCTTCCEEECTTS
T ss_pred             ------HhCCCCCCEeeCCCCCCCCHH-HHHH-H--hcCCCCCEEeccCc
Confidence                  2345667777776663 3333 2211 2  45778888888777

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.75  E-value=3.2e-17  Score=147.10  Aligned_cols=196  Identities=17%  Similarity=0.219  Sum_probs=149.0

Q ss_pred             EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCC----------CCCCcHH
Q 026356           25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNG----------CQKISDK   94 (240)
Q Consensus        25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~----------c~~l~~~   94 (240)
                      .|++++|. +++..+..+. ..+++|++|+++  +.+.+.++..++..+    ++|++|++++          |+.+++.
T Consensus       297 ~L~Ls~~~-l~~~~~~~~~-~~~~~L~~L~L~--~~~~~~~l~~~~~~~----~~L~~L~L~~g~~~~~~~~~~~~~~~~  368 (592)
T 3ogk_B          297 KLDLLYAL-LETEDHCTLI-QKCPNLEVLETR--NVIGDRGLEVLAQYC----KQLKRLRIERGADEQGMEDEEGLVSQR  368 (592)
T ss_dssp             EEEETTCC-CCHHHHHHHH-TTCTTCCEEEEE--GGGHHHHHHHHHHHC----TTCCEEEEECCCCSSTTSSTTCCCCHH
T ss_pred             EEecCCCc-CCHHHHHHHH-HhCcCCCEEecc--CccCHHHHHHHHHhC----CCCCEEEeecCccccccccccCccCHH
Confidence            38999888 7766665543 478888888888  457888888887776    7889999884          7888888


Q ss_pred             HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEecc---CCCCCCH----HHHHHHHHhCCCCcEEeccCCC
Q 026356           95 GIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLS---GCKNLLD----KSLQLIADNYQELESLNLTRYV  167 (240)
Q Consensus        95 ~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~---~c~~ltd----~~l~~l~~~~~~L~~L~l~~c~  167 (240)
                      ++..++..|++|++|+++ |..+++.++..++..+++|++|+++   .|..+++    .++..+..++++|+.|++++|.
T Consensus       369 ~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~  447 (592)
T 3ogk_B          369 GLIALAQGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ  447 (592)
T ss_dssp             HHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCG
T ss_pred             HHHHHHhhCccCeEEEee-cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCC
Confidence            888888888889988885 5578888888888888888888887   3557775    4677777778888888887765


Q ss_pred             C-CCHHHHHHHHHhChhhhhH--------------HHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhh
Q 026356          168 N-MILLGLFYIWSNNILLMSE--------------FIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIET  232 (240)
Q Consensus       168 ~-it~~~~~~l~~~~~~~l~~--------------l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  232 (240)
                      + +++.++..+...++. ++.              -...+|+.|+.++++.+.+.+. ++..+.  ..+++|+.|++++|
T Consensus       448 ~~l~~~~~~~~~~~~~~-L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~--~~l~~L~~L~ls~n  523 (592)
T 3ogk_B          448 GGLTDLGLSYIGQYSPN-VRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER-AIAAAV--TKLPSLRYLWVQGY  523 (592)
T ss_dssp             GGCCHHHHHHHHHSCTT-CCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH-HHHHHH--HHCSSCCEEEEESC
T ss_pred             CCccHHHHHHHHHhCcc-ceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH-HHHHHH--HhcCccCeeECcCC
Confidence            3 788888777765433 211              1346778888888888887555 555565  67889999999888


Q ss_pred             h
Q 026356          233 I  233 (240)
Q Consensus       233 ~  233 (240)
                      .
T Consensus       524 ~  524 (592)
T 3ogk_B          524 R  524 (592)
T ss_dssp             B
T ss_pred             c
Confidence            7

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.74  E-value=4e-17  Score=146.44  Aligned_cols=195  Identities=17%  Similarity=0.254  Sum_probs=147.5

Q ss_pred             EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEec--------CCCCCCcHHHH
Q 026356           25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNL--------NGCQKISDKGI   96 (240)
Q Consensus        25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l--------~~c~~l~~~~~   96 (240)
                      .|++++|. +++..+..+. ..+++|++|++++|  +++.++..++..+    ++|++|++        .+|..+++.++
T Consensus       293 ~L~L~~~~-l~~~~l~~~~-~~~~~L~~L~l~~~--~~~~~l~~l~~~~----~~L~~L~L~~~~~~g~~~~~~l~~~~l  364 (594)
T 2p1m_B          293 TLNLSYAT-VQSYDLVKLL-CQCPKLQRLWVLDY--IEDAGLEVLASTC----KDLRELRVFPSEPFVMEPNVALTEQGL  364 (594)
T ss_dssp             EEECTTCC-CCHHHHHHHH-TTCTTCCEEEEEGG--GHHHHHHHHHHHC----TTCCEEEEECSCTTCSSCSSCCCHHHH
T ss_pred             EEEccCCC-CCHHHHHHHH-hcCCCcCEEeCcCc--cCHHHHHHHHHhC----CCCCEEEEecCcccccccCCCCCHHHH
Confidence            49999998 7777666554 47888999999885  7788888887766    88899988        45578888888


Q ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEecc-----CCCCCC----HHHHHHHHHhCCCCcEEeccCCC
Q 026356           97 EIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLS-----GCKNLL----DKSLQLIADNYQELESLNLTRYV  167 (240)
Q Consensus        97 ~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~-----~c~~lt----d~~l~~l~~~~~~L~~L~l~~c~  167 (240)
                      ..++..|++|++|.++ |..+++.++..++..+++|+.|+++     +|..++    +.++..+..++++|+.|++++  
T Consensus       365 ~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--  441 (594)
T 2p1m_B          365 VSVSMGCPKLESVLYF-CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--  441 (594)
T ss_dssp             HHHHHHCTTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--
T ss_pred             HHHHHhchhHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--
Confidence            8888788888888665 5578888888888888888888888     667888    777777777788888888866  


Q ss_pred             CCCHHHHHHHHHhChhhhhHH--------------HhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356          168 NMILLGLFYIWSNNILLMSEF--------------IYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  233 (240)
Q Consensus       168 ~it~~~~~~l~~~~~~~l~~l--------------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  233 (240)
                      .+++.++..+...++. ++.+              ...+++.|+.++++.+.+.+. +...+.  ..+++|+.|++++|+
T Consensus       442 ~l~~~~~~~l~~~~~~-L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~-~~~~~~--~~l~~L~~L~l~~~~  517 (594)
T 2p1m_B          442 LLTDKVFEYIGTYAKK-MEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK-ALLANA--SKLETMRSLWMSSCS  517 (594)
T ss_dssp             SCCHHHHHHHHHHCTT-CCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH-HHHHTG--GGGGGSSEEEEESSC
T ss_pred             cccHHHHHHHHHhchh-ccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH-HHHHHH--HhCCCCCEEeeeCCC
Confidence            6888888777664332 2211              124577888888888888544 444444  678889999988887


Q ss_pred             h
Q 026356          234 K  234 (240)
Q Consensus       234 ~  234 (240)
                      .
T Consensus       518 ~  518 (594)
T 2p1m_B          518 V  518 (594)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.73  E-value=1e-16  Score=134.14  Aligned_cols=170  Identities=18%  Similarity=0.261  Sum_probs=140.6

Q ss_pred             cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHH
Q 026356           46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL  125 (240)
Q Consensus        46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l  125 (240)
                      .+++|++|++++| .+++.++..+...+    ++|++|++++| .+++.....++. +++|++|++++|..+++.++..+
T Consensus        91 ~~~~L~~L~L~~~-~l~~~~~~~~~~~~----~~L~~L~L~~~-~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~  163 (336)
T 2ast_B           91 SPFRVQHMDLSNS-VIEVSTLHGILSQC----SKLQNLSLEGL-RLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTL  163 (336)
T ss_dssp             CCBCCCEEECTTC-EECHHHHHHHHTTB----CCCSEEECTTC-BCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHH
T ss_pred             cCCCCCEEEccCC-CcCHHHHHHHHhhC----CCCCEEeCcCc-ccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHH
Confidence            4688999999995 58888777776555    99999999997 799888888876 99999999999988999999998


Q ss_pred             HHcCCcCCEEeccCCCCCCHHHHHHHHHhCC-CCcEEeccCCC-CCCHHHHHHHHHhChhhhhHHHhcCCccceeecccC
Q 026356          126 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ-ELESLNLTRYV-NMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINS  203 (240)
Q Consensus       126 ~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~-~L~~L~l~~c~-~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~  203 (240)
                      ...+++|++|++++|..+++.++..+...++ +|+.|++++|. .+++.++....            .+++.|+.++++.
T Consensus       164 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~------------~~~~~L~~L~l~~  231 (336)
T 2ast_B          164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV------------RRCPNLVHLDLSD  231 (336)
T ss_dssp             HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH------------HHCTTCSEEECTT
T ss_pred             HhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH------------hhCCCCCEEeCCC
Confidence            8999999999999998899988888777899 99999999986 68887665543            3367788999988


Q ss_pred             CC-CCchhHHHHHHHhhcccccchhhhhhhhhhhcc
Q 026356          204 SN-GGDHLAFAYIIETNTYKHGKEKHIIETIKTGQQ  238 (240)
Q Consensus       204 ~~-~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~d~  238 (240)
                      +. +.+. .... +  ..+++|+.|++.+|..+.+.
T Consensus       232 ~~~l~~~-~~~~-l--~~l~~L~~L~l~~~~~~~~~  263 (336)
T 2ast_B          232 SVMLKND-CFQE-F--FQLNYLQHLSLSRCYDIIPE  263 (336)
T ss_dssp             CTTCCGG-GGGG-G--GGCTTCCEEECTTCTTCCGG
T ss_pred             CCcCCHH-HHHH-H--hCCCCCCEeeCCCCCCCCHH
Confidence            87 5544 3332 2  57799999999999866654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.72  E-value=4.5e-17  Score=146.05  Aligned_cols=177  Identities=17%  Similarity=0.250  Sum_probs=150.2

Q ss_pred             cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEe--------cCCCCC
Q 026356           46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSI--------YWNVRV  117 (240)
Q Consensus        46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l--------~~~~~l  117 (240)
                      .+++|++|++++|. +++.++..+...+    ++|++|++++|  +++.++..++..|++|++|++        .++..+
T Consensus       287 ~~~~L~~L~L~~~~-l~~~~l~~~~~~~----~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l  359 (594)
T 2p1m_B          287 VCSRLTTLNLSYAT-VQSYDLVKLLCQC----PKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL  359 (594)
T ss_dssp             HHTTCCEEECTTCC-CCHHHHHHHHTTC----TTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCC
T ss_pred             hhCCCCEEEccCCC-CCHHHHHHHHhcC----CCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCC
Confidence            67899999999976 9998888776655    99999999997  888999999989999999999        346689


Q ss_pred             CHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEecc-----CCCCCC----HHHHHHHHHhChhhhhHH
Q 026356          118 TDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLT-----RYVNMI----LLGLFYIWSNNILLMSEF  188 (240)
Q Consensus       118 ~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~-----~c~~it----~~~~~~l~~~~~~~l~~l  188 (240)
                      ++.++..++..+++|++|.++.+ .+++.++..++.++++|+.|+++     +|..++    +.++..+..+++. ++.+
T Consensus       360 ~~~~l~~l~~~~~~L~~L~~~~~-~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-L~~L  437 (594)
T 2p1m_B          360 TEQGLVSVSMGCPKLESVLYFCR-QMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKD-LRRL  437 (594)
T ss_dssp             CHHHHHHHHHHCTTCCEEEEEES-CCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTT-CCEE
T ss_pred             CHHHHHHHHHhchhHHHHHHhcC-CcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCC-ccEE
Confidence            99999999999999999977655 89999999999889999999999     788999    8898888777664 4444


Q ss_pred             Hhc-------------CCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhh
Q 026356          189 IYH-------------GIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK  234 (240)
Q Consensus       189 ~~~-------------~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  234 (240)
                      .+.             .++.|+.++++++.+.+. ++..+.  ..+++|++|++++|+.
T Consensus       438 ~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~-~~~~l~--~~~~~L~~L~L~~n~~  493 (594)
T 2p1m_B          438 SLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDL-GMHHVL--SGCDSLRKLEIRDCPF  493 (594)
T ss_dssp             ECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHH-HHHHHH--HHCTTCCEEEEESCSC
T ss_pred             eecCcccHHHHHHHHHhchhccEeeccCCCCcHH-HHHHHH--hcCCCcCEEECcCCCC
Confidence            332             377899999999988776 566665  6799999999999986

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.68  E-value=2.9e-16  Score=140.86  Aligned_cols=180  Identities=17%  Similarity=0.255  Sum_probs=150.9

Q ss_pred             hcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecC----------C
Q 026356           45 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYW----------N  114 (240)
Q Consensus        45 ~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~----------~  114 (240)
                      ..+++|++|++++|. +++.++..+...+    ++|++|+++.  .+++.++..++..|++|++|++++          |
T Consensus       290 ~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~----~~L~~L~L~~--~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~  362 (592)
T 3ogk_B          290 PFAAQIRKLDLLYAL-LETEDHCTLIQKC----PNLEVLETRN--VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEE  362 (592)
T ss_dssp             GGGGGCCEEEETTCC-CCHHHHHHHHTTC----TTCCEEEEEG--GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTT
T ss_pred             hhcCCCcEEecCCCc-CCHHHHHHHHHhC----cCCCEEeccC--ccCHHHHHHHHHhCCCCCEEEeecCcccccccccc
Confidence            478899999999976 9998887665544    9999999994  689999999999999999999995          7


Q ss_pred             CCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccC---CCCCCH----HHHHHHHHhChhhhhH
Q 026356          115 VRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR---YVNMIL----LGLFYIWSNNILLMSE  187 (240)
Q Consensus       115 ~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~---c~~it~----~~~~~l~~~~~~~l~~  187 (240)
                      ..+++.++..++..|++|++|+++.+ .+++.++..++.++++|+.|++++   |+.+++    .|+..+..+++. ++.
T Consensus       363 ~~~~~~~~~~l~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~-L~~  440 (592)
T 3ogk_B          363 GLVSQRGLIALAQGCQELEYMAVYVS-DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKK-LRR  440 (592)
T ss_dssp             CCCCHHHHHHHHHHCTTCSEEEEEES-CCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTT-CCE
T ss_pred             CccCHHHHHHHHhhCccCeEEEeecC-CccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCC-CCE
Confidence            89999999999999999999999554 999999999998899999999983   668886    578877776554 433


Q ss_pred             HHh----------------cCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhhhhc
Q 026356          188 FIY----------------HGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQ  237 (240)
Q Consensus       188 l~~----------------~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~d  237 (240)
                      +.+                ..++.|+.++++++.+.+. ++..+.  ..+++|++|++++|+ ++|
T Consensus       441 L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~--~~~~~L~~L~l~~n~-l~~  502 (592)
T 3ogk_B          441 FAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE-GLMEFS--RGCPNLQKLEMRGCC-FSE  502 (592)
T ss_dssp             EEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHH-HHHHHH--TCCTTCCEEEEESCC-CBH
T ss_pred             EEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHH-HHHHHH--hcCcccCeeeccCCC-CcH
Confidence            332                3478899999999988876 667777  789999999999998 443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.67  E-value=4.3e-17  Score=123.68  Aligned_cols=93  Identities=13%  Similarity=0.231  Sum_probs=60.2

Q ss_pred             CccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHc---CCcCCEEeccCCCCCCHHHHHHHHHhC
Q 026356           79 DLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKN---CKHIIDLNLSGCKNLLDKSLQLIADNY  155 (240)
Q Consensus        79 ~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~---~~~L~~L~l~~c~~ltd~~l~~l~~~~  155 (240)
                      +|++|++++| .+++.++.++. .|++|++|++++|..+||.++..++..   +++|++|++++|..|||.++..++ ++
T Consensus        62 ~L~~LDLs~~-~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~  138 (176)
T 3e4g_A           62 KIQAIDATDS-CIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HF  138 (176)
T ss_dssp             CEEEEEEESC-CCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GC
T ss_pred             eEeEEeCcCC-CccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cC
Confidence            4666666666 36666666663 466666666666666666666666642   456666666666666666666665 36


Q ss_pred             CCCcEEeccCCCCCCHHHH
Q 026356          156 QELESLNLTRYVNMILLGL  174 (240)
Q Consensus       156 ~~L~~L~l~~c~~it~~~~  174 (240)
                      ++|++|++++|+.+||.|+
T Consensus       139 ~~L~~L~L~~c~~Itd~gl  157 (176)
T 3e4g_A          139 RNLKYLFLSDLPGVKEKEK  157 (176)
T ss_dssp             TTCCEEEEESCTTCCCHHH
T ss_pred             CCCCEEECCCCCCCCchHH
Confidence            6666666666666666654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.67  E-value=1.8e-15  Score=129.18  Aligned_cols=203  Identities=11%  Similarity=0.048  Sum_probs=108.6

Q ss_pred             eEEeccCCCCCChHHHHHhh--hhcCCCCceEeccCC--CCCc---HHHHHHHHHHccCCCCCccEEecCCCCCCcHHHH
Q 026356           24 KVIDLREMNNAGNRLVAALS--IPRYRHVREINLEFA--QDIE---DRHLELLKTKCLGSLQDLESLNLNGCQKISDKGI   96 (240)
Q Consensus        24 ~~L~l~~~~~~~~~~l~~l~--~~~~~~L~~L~l~~c--~~i~---~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~   96 (240)
                      +.|+|++|. ++.....+++  +..+++|++|++++|  +.+.   ..++..++..+ ..+++|++|+++++ .+++.+.
T Consensus        35 ~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l-~~~~~L~~L~Ls~n-~l~~~~~  111 (386)
T 2ca6_A           35 KEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL-LKCPKLHTVRLSDN-AFGPTAQ  111 (386)
T ss_dssp             CEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHH-TTCTTCCEEECCSC-CCCTTTH
T ss_pred             cEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHH-hhCCcccEEECCCC-cCCHHHH
Confidence            347777664 4444444432  335666777777664  2222   23555555443 44566666666664 5555433


Q ss_pred             HHHH---hcCCCCCEEEecCCCCCCHHHHHHHHHcC------------CcCCEEeccCCCCCCHHHHHHHHH---hCCCC
Q 026356           97 EIIS---STCPELKVFSIYWNVRVTDIGIQHLVKNC------------KHIIDLNLSGCKNLLDKSLQLIAD---NYQEL  158 (240)
Q Consensus        97 ~~l~---~~~~~L~~L~l~~~~~l~~~~~~~l~~~~------------~~L~~L~l~~c~~ltd~~l~~l~~---~~~~L  158 (240)
                      ..++   ..+++|++|++++| .+++.+...++..+            ++|++|++++| .+++.++..++.   .+++|
T Consensus       112 ~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L  189 (386)
T 2ca6_A          112 EPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRLL  189 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHHHHHhCCCc
Confidence            3222   24666666666665 45555444443322            56666666666 565554443332   45666


Q ss_pred             cEEeccCCCCCCHHHHHHHHHh----ChhhhhH---------------H--HhcCCccceeecccCCCCCchhHHHHHHH
Q 026356          159 ESLNLTRYVNMILLGLFYIWSN----NILLMSE---------------F--IYHGIRFFQAVQINSSNGGDHLAFAYIIE  217 (240)
Q Consensus       159 ~~L~l~~c~~it~~~~~~l~~~----~~~~l~~---------------l--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~  217 (240)
                      +.|++++| .+++.|+..+...    ++. ++.               +  .+..++.|+.++++.+.+.+. +...+..
T Consensus       190 ~~L~L~~n-~l~~~g~~~l~~~~l~~~~~-L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~-~~~~l~~  266 (386)
T 2ca6_A          190 HTVKMVQN-GIRPEGIEHLLLEGLAYCQE-LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR-GAAAVVD  266 (386)
T ss_dssp             CEEECCSS-CCCHHHHHHHHHTTGGGCTT-CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH-HHHHHHH
T ss_pred             CEEECcCC-CCCHhHHHHHHHHHhhcCCC-ccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh-hHHHHHH
Confidence            66666664 5666665554431    110 100               0  234566777888877777665 2222221


Q ss_pred             h---hcccccchhhhhhhhh
Q 026356          218 T---NTYKHGKEKHIIETIK  234 (240)
Q Consensus       218 ~---~~~~~L~~L~l~~c~~  234 (240)
                      .   ..+++|+.|++++|.-
T Consensus       267 ~l~~~~~~~L~~L~L~~n~i  286 (386)
T 2ca6_A          267 AFSKLENIGLQTLRLQYNEI  286 (386)
T ss_dssp             HHHTCSSCCCCEEECCSSCC
T ss_pred             HHhhccCCCeEEEECcCCcC
Confidence            1   2377888888877653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.67  E-value=6e-17  Score=122.88  Aligned_cols=105  Identities=24%  Similarity=0.255  Sum_probs=92.3

Q ss_pred             CCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhc---CCCCCEEEecCCCCCCHHHHHH
Q 026356           48 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST---CPELKVFSIYWNVRVTDIGIQH  124 (240)
Q Consensus        48 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~---~~~L~~L~l~~~~~l~~~~~~~  124 (240)
                      ..|++|++++|. |++.++..+.     .+++|++|++++|..+||.++..++..   |++|++|++++|+++||.|+..
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~~L~-----~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~  134 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFDHME-----GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA  134 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGGGGT-----TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred             ceEeEEeCcCCC-ccHHHHHHhc-----CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence            469999999986 9999998863     349999999999999999999999973   6789999999999999999999


Q ss_pred             HHHcCCcCCEEeccCCCCCCHHHH--HHHHHhCCCCc
Q 026356          125 LVKNCKHIIDLNLSGCKNLLDKSL--QLIADNYQELE  159 (240)
Q Consensus       125 l~~~~~~L~~L~l~~c~~ltd~~l--~~l~~~~~~L~  159 (240)
                      +. .+++|++|++++|+.|||.++  ..+.++.|+++
T Consensus       135 L~-~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~  170 (176)
T 3e4g_A          135 LH-HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE  170 (176)
T ss_dssp             GG-GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred             Hh-cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence            87 689999999999999999774  44666788876

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.67  E-value=3e-15  Score=127.77  Aligned_cols=178  Identities=12%  Similarity=0.098  Sum_probs=99.9

Q ss_pred             cCCCCceEeccCCCCCcHHHHHHHHHHccCCC---------CCccEEecCCCCCCcHHHHHHHHh---cCCCCCEEEecC
Q 026356           46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSL---------QDLESLNLNGCQKISDKGIEIISS---TCPELKVFSIYW  113 (240)
Q Consensus        46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~---------~~L~~L~l~~c~~l~~~~~~~l~~---~~~~L~~L~l~~  113 (240)
                      .+++|++|++++| .+++.+...++..+ ..+         ++|++|++++| .+++.++..++.   .+++|++|++++
T Consensus       120 ~~~~L~~L~L~~n-~l~~~~~~~l~~~l-~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~  196 (386)
T 2ca6_A          120 KHTPLEHLYLHNN-GLGPQAGAKIARAL-QELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRLLHTVKMVQ  196 (386)
T ss_dssp             HCTTCCEEECCSS-CCHHHHHHHHHHHH-HHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHHHCTTCCEEECCS
T ss_pred             hCCCCCEEECcCC-CCCHHHHHHHHHHH-HHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHHHHHhCCCcCEEECcC
Confidence            4555555555552 35554444444322 112         45666666653 555444443222   455666666665


Q ss_pred             CCCCCHHHHHHHHH----cCCcCCEEeccCCCCCCHHHHHHHH---HhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhh
Q 026356          114 NVRVTDIGIQHLVK----NCKHIIDLNLSGCKNLLDKSLQLIA---DNYQELESLNLTRYVNMILLGLFYIWSNNILLMS  186 (240)
Q Consensus       114 ~~~l~~~~~~~l~~----~~~~L~~L~l~~c~~ltd~~l~~l~---~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~  186 (240)
                      | .+++.++..++.    .+++|+.|++++| .+++.+...+.   ..+++|+.|++++| .+++.|...++..      
T Consensus       197 n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~------  267 (386)
T 2ca6_A          197 N-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDC-LLSARGAAAVVDA------  267 (386)
T ss_dssp             S-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTC-CCCHHHHHHHHHH------
T ss_pred             C-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCC-CCchhhHHHHHHH------
Confidence            5 566555544443    4556666666666 46555444433   23556666666664 4666555544332      


Q ss_pred             HHHhcCCccceeecccCCCCCchhHHHHHHHh--hcccccchhhhhhhhhhhc
Q 026356          187 EFIYHGIRFFQAVQINSSNGGDHLAFAYIIET--NTYKHGKEKHIIETIKTGQ  237 (240)
Q Consensus       187 ~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~c~~~~d  237 (240)
                       +....++.|+.++++++.+.+. ++..+...  ..+++|+.|++.+|+-.++
T Consensus       268 -l~~~~~~~L~~L~L~~n~i~~~-g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          268 -FSKLENIGLQTLRLQYNEIELD-AVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             -HHTCSSCCCCEEECCSSCCBHH-HHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             -HhhccCCCeEEEECcCCcCCHH-HHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence             1113478899999999999885 33333221  4579999999998875443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.66  E-value=6.3e-15  Score=125.50  Aligned_cols=174  Identities=13%  Similarity=0.118  Sum_probs=122.6

Q ss_pred             CeEEeccCCCCCChHHHHHhhh---hcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHH
Q 026356           23 PKVIDLREMNNAGNRLVAALSI---PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII   99 (240)
Q Consensus        23 ~~~L~l~~~~~~~~~~l~~l~~---~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l   99 (240)
                      .+.|++++|. ++......+..   ...++|++|++++ +.+++.++..++..+    ++|++|++++| .+++.+...+
T Consensus        74 L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~L----~~L~~L~Ls~n-~l~~~~~~~L  146 (372)
T 3un9_A           74 LRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLAS-CQLDPAGLRTLLPVF----LRARKLGLQLN-SLGPEACKDL  146 (372)
T ss_dssp             CCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTT-CCCCHHHHHHTHHHH----HTEEEEECCSS-CCCHHHHHHH
T ss_pred             CCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecC-CCCCHHHHHHHHHHH----HhccHhhcCCC-CCCHHHHHHH
Confidence            3458888877 55554444431   1336788888888 468888888777766    67888888885 8888777776


Q ss_pred             Hh----cCCCCCEEEecCCCCCCHHHHHHHH---HcCCcCCEEeccCCCCCCHHHHHHHHH---hCCCCcEEeccCCCCC
Q 026356          100 SS----TCPELKVFSIYWNVRVTDIGIQHLV---KNCKHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTRYVNM  169 (240)
Q Consensus       100 ~~----~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~c~~ltd~~l~~l~~---~~~~L~~L~l~~c~~i  169 (240)
                      +.    .+++|++|++++| .+++.++..++   ..+++|++|++++| .+++.++..++.   .+++|+.|++++| .+
T Consensus       147 ~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i  223 (372)
T 3un9_A          147 RDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN-GA  223 (372)
T ss_dssp             HHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS-CC
T ss_pred             HHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC-CC
Confidence            54    3577888888877 68877776664   45678888888888 688877766654   3567888888885 78


Q ss_pred             CHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCchhHHHHHH
Q 026356          170 ILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYII  216 (240)
Q Consensus       170 t~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~  216 (240)
                      ++.|...++..         +..++.|+.++++++.+.+. +...+.
T Consensus       224 ~~~g~~~l~~~---------L~~~~~L~~L~Ls~N~i~~~-g~~~L~  260 (372)
T 3un9_A          224 GDTAALALARA---------AREHPSLELLHLYFNELSSE-GRQVLR  260 (372)
T ss_dssp             CHHHHHHHHHH---------HHHCSSCCEEECTTSSCCHH-HHHHHH
T ss_pred             CHHHHHHHHHH---------HHhCCCCCEEeccCCCCCHH-HHHHHH
Confidence            88877766543         23356677888888888776 455554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.65  E-value=3.9e-15  Score=129.57  Aligned_cols=151  Identities=19%  Similarity=0.280  Sum_probs=92.9

Q ss_pred             CeEEeccCCCCCChHHHHHh--hhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHH
Q 026356           23 PKVIDLREMNNAGNRLVAAL--SIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS  100 (240)
Q Consensus        23 ~~~L~l~~~~~~~~~~l~~l--~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~  100 (240)
                      .+.|++++|. +++.++..+  .+..+++|++|++++ +.+++.+...++..+....++|++|++++| .+++.+...++
T Consensus        87 L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~  163 (461)
T 1z7x_W           87 IQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSD-NLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLA  163 (461)
T ss_dssp             CCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCS-SBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHH
T ss_pred             eeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCC-CcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHH
Confidence            3347777665 333221111  123667777777777 347777777776655444556777777775 66665544333


Q ss_pred             h---cCCCCCEEEecCCCCCCHHHHHHHHHc----CCcCCEEeccCCCCCCHHHHHHHH---HhCCCCcEEeccCCCCCC
Q 026356          101 S---TCPELKVFSIYWNVRVTDIGIQHLVKN----CKHIIDLNLSGCKNLLDKSLQLIA---DNYQELESLNLTRYVNMI  170 (240)
Q Consensus       101 ~---~~~~L~~L~l~~~~~l~~~~~~~l~~~----~~~L~~L~l~~c~~ltd~~l~~l~---~~~~~L~~L~l~~c~~it  170 (240)
                      .   .+++|++|+++++ .+++.++..+...    .++|++|++++| .+++.++..+.   ..+++|++|++++| .++
T Consensus       164 ~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~  240 (461)
T 1z7x_W          164 SVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSN-KLG  240 (461)
T ss_dssp             HHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSS-BCH
T ss_pred             HHHhhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCC-cCC
Confidence            2   4677777777776 4777766666543    347777777777 67765544333   24677777777775 677


Q ss_pred             HHHHHHHHH
Q 026356          171 LLGLFYIWS  179 (240)
Q Consensus       171 ~~~~~~l~~  179 (240)
                      +.++..++.
T Consensus       241 ~~~~~~l~~  249 (461)
T 1z7x_W          241 DVGMAELCP  249 (461)
T ss_dssp             HHHHHHHHH
T ss_pred             hHHHHHHHH
Confidence            777666554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.65  E-value=2.2e-15  Score=128.30  Aligned_cols=173  Identities=14%  Similarity=0.164  Sum_probs=144.4

Q ss_pred             cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHH
Q 026356           46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL  125 (240)
Q Consensus        46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l  125 (240)
                      ..++|+.|++++| .+++.+...++.......++|+.|++++| .+++.++..++..+++|++|++++| .+++.++..+
T Consensus        70 ~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L  146 (372)
T 3un9_A           70 VLSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDL  146 (372)
T ss_dssp             HHTTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHH
T ss_pred             HHhhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHH
Confidence            4578999999994 69999999998876555579999999996 8999999999888889999999998 8999998888


Q ss_pred             HHc----CCcCCEEeccCCCCCCHHHHHHHHH---hCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCcccee
Q 026356          126 VKN----CKHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQA  198 (240)
Q Consensus       126 ~~~----~~~L~~L~l~~c~~ltd~~l~~l~~---~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~  198 (240)
                      +..    .++|++|++++| .+++.++..++.   .+++|++|++++| .+++.|+..++..         +..++.|+.
T Consensus       147 ~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~---------L~~~~~L~~  215 (372)
T 3un9_A          147 RDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQ---------LDRNRQLQE  215 (372)
T ss_dssp             HHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHH---------GGGCSCCCE
T ss_pred             HHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHH---------HhcCCCcCe
Confidence            653    578999999999 899988887764   5789999999995 7999998877653         244567999


Q ss_pred             ecccCCCCCchhHHHHHHH-hhcccccchhhhhhhh
Q 026356          199 VQINSSNGGDHLAFAYIIE-TNTYKHGKEKHIIETI  233 (240)
Q Consensus       199 l~l~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~c~  233 (240)
                      ++++++.+.+. +...+.. ...+++|++|++++|+
T Consensus       216 L~Ls~N~i~~~-g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          216 LNVAYNGAGDT-AALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             EECCSSCCCHH-HHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             EECCCCCCCHH-HHHHHHHHHHhCCCCCEEeccCCC
Confidence            99999999887 4443332 2578999999999886

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.64  E-value=8.6e-15  Score=127.40  Aligned_cols=174  Identities=15%  Similarity=0.157  Sum_probs=92.7

Q ss_pred             cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHh---cCCCCCEEEecCCCCCCHHHH
Q 026356           46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS---TCPELKVFSIYWNVRVTDIGI  122 (240)
Q Consensus        46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~  122 (240)
                      .+++|++|+++++ .+++.++..++......+++|++|++++| .+++.++..++.   .+++|++|+++++ .+++.+.
T Consensus       225 ~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~  301 (461)
T 1z7x_W          225 SKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGA  301 (461)
T ss_dssp             HCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHH
T ss_pred             hCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHH
Confidence            4566666666663 46666655555544334566666666665 666655444433   3566666666655 4666555


Q ss_pred             HHHHHcC----CcCCEEeccCCCCCCHHHHHHHH---HhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCcc
Q 026356          123 QHLVKNC----KHIIDLNLSGCKNLLDKSLQLIA---DNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRF  195 (240)
Q Consensus       123 ~~l~~~~----~~L~~L~l~~c~~ltd~~l~~l~---~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~  195 (240)
                      ..+...+    ++|++|++++| .+++.+...++   ..+++|+.|++++| .+++.+...++..        .....+.
T Consensus       302 ~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~--------l~~~~~~  371 (461)
T 1z7x_W          302 RLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQG--------LGQPGSV  371 (461)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHH--------HTSTTCC
T ss_pred             HHHHHHhccCCccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHH--------HcCCCCc
Confidence            5554432    36666666666 45554433322   23566666666664 5666655555432        0012345


Q ss_pred             ceeecccCCCCCchhHHHHHH-Hhhcccccchhhhhhhh
Q 026356          196 FQAVQINSSNGGDHLAFAYII-ETNTYKHGKEKHIIETI  233 (240)
Q Consensus       196 L~~l~l~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~c~  233 (240)
                      |+.++++.+.+.+. +...+. ....+++|++|++++|+
T Consensus       372 L~~L~L~~n~i~~~-~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          372 LRVLWLADCDVSDS-SCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             CCEEECTTSCCCHH-HHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             eEEEECCCCCCChh-hHHHHHHHHHhCCCccEEECCCCC
Confidence            66666666666553 222221 11446666666666554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.54  E-value=2.2e-14  Score=121.50  Aligned_cols=182  Identities=16%  Similarity=0.113  Sum_probs=83.4

Q ss_pred             cCC-CCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHh---cC-CCCCEEEecCCCCCCHH
Q 026356           46 RYR-HVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS---TC-PELKVFSIYWNVRVTDI  120 (240)
Q Consensus        46 ~~~-~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~---~~-~~L~~L~l~~~~~l~~~  120 (240)
                      .++ +|++|++++ +.+++.+...++.......++|++|++++| .+++.+...++.   .+ ++|++|++++| .+++.
T Consensus        48 ~~~~~L~~L~Ls~-N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~  124 (362)
T 3goz_A           48 NTPASVTSLNLSG-NSLGFKNSDELVQILAAIPANVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSK  124 (362)
T ss_dssp             TCCTTCCEEECCS-SCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGS
T ss_pred             hCCCceeEEECcC-CCCCHHHHHHHHHHHhccCCCccEEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcCC-cCCcH
Confidence            444 566666665 345554444444432222255555555554 444333322222   22 45555555554 34443


Q ss_pred             HHHHHHHc----CCcCCEEeccCCCCCCHHHHHHHHH---hCC-CCcEEeccCCCCCCHHHHHHHHHh---ChhhhhHH-
Q 026356          121 GIQHLVKN----CKHIIDLNLSGCKNLLDKSLQLIAD---NYQ-ELESLNLTRYVNMILLGLFYIWSN---NILLMSEF-  188 (240)
Q Consensus       121 ~~~~l~~~----~~~L~~L~l~~c~~ltd~~l~~l~~---~~~-~L~~L~l~~c~~it~~~~~~l~~~---~~~~l~~l-  188 (240)
                      +...+...    +++|++|++++| .+++.+...++.   ..+ +|+.|++++| .+++.+...++..   ++..++.+ 
T Consensus       125 ~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~  202 (362)
T 3goz_A          125 SSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLD  202 (362)
T ss_dssp             CHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred             HHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEE
Confidence            33333221    235555555555 454433333222   122 4555555553 4444333222211   11011111 


Q ss_pred             -----------------HhcCCccceeecccCCCCCchhHHHHHH-Hhhcccccchhhhhhhh
Q 026356          189 -----------------IYHGIRFFQAVQINSSNGGDHLAFAYII-ETNTYKHGKEKHIIETI  233 (240)
Q Consensus       189 -----------------~~~~~~~L~~l~l~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~c~  233 (240)
                                       .....+.|+.++++++.+.+. +...+. ....+++|+.|++++|.
T Consensus       203 Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          203 LSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP-SLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             CTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC-CHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             CCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH-HHHHHHHHHhcCCCccEEEeccCC
Confidence                             112235688888888887775 222221 12567778888887776

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.50  E-value=4.7e-14  Score=119.48  Aligned_cols=198  Identities=13%  Similarity=0.075  Sum_probs=127.2

Q ss_pred             EeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCC-CccEEecCCCCCCcHHHHHHHHh---
Q 026356           26 IDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQ-DLESLNLNGCQKISDKGIEIISS---  101 (240)
Q Consensus        26 L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~-~L~~L~l~~c~~l~~~~~~~l~~---  101 (240)
                      ++++.+.. .. .+..+ ....++|++|+++++ .+++.+...++..+ ..++ +|++|++++| .+++.+...++.   
T Consensus         3 ~~ls~n~~-~~-~~~~~-~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l-~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~   76 (362)
T 3goz_A            3 YKLTLHPG-SN-PVEEF-TSIPHGVTSLDLSLN-NLYSISTVELIQAF-ANTPASVTSLNLSGN-SLGFKNSDELVQILA   76 (362)
T ss_dssp             EECCCCTT-CC-HHHHH-HTSCTTCCEEECTTS-CGGGSCHHHHHHHH-HTCCTTCCEEECCSS-CGGGSCHHHHHHHHH
T ss_pred             cccccccc-hH-HHHHH-HhCCCCceEEEccCC-CCChHHHHHHHHHH-HhCCCceeEEECcCC-CCCHHHHHHHHHHHh
Confidence            34555543 22 23333 235556999999994 68888776666554 3446 8999999996 888765555544   


Q ss_pred             c-CCCCCEEEecCCCCCCHHHHH---HHHHcC-CcCCEEeccCCCCCCHHHHHHHHHh----CCCCcEEeccCCCCCCHH
Q 026356          102 T-CPELKVFSIYWNVRVTDIGIQ---HLVKNC-KHIIDLNLSGCKNLLDKSLQLIADN----YQELESLNLTRYVNMILL  172 (240)
Q Consensus       102 ~-~~~L~~L~l~~~~~l~~~~~~---~l~~~~-~~L~~L~l~~c~~ltd~~l~~l~~~----~~~L~~L~l~~c~~it~~  172 (240)
                      . +++|++|++++| .+++.+..   .....+ ++|++|++++| .+++.+...++..    +++|++|++++| .+++.
T Consensus        77 ~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~  153 (362)
T 3goz_A           77 AIPANVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIK  153 (362)
T ss_dssp             TSCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGS
T ss_pred             ccCCCccEEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHH
Confidence            2 489999999998 56654444   434455 79999999999 7998777766653    469999999995 88887


Q ss_pred             HHHHHHHh---ChhhhhHH-----------------HhcCC-ccceeecccCCCCCchhHHHHHHHh-hc-ccccchhhh
Q 026356          173 GLFYIWSN---NILLMSEF-----------------IYHGI-RFFQAVQINSSNGGDHLAFAYIIET-NT-YKHGKEKHI  229 (240)
Q Consensus       173 ~~~~l~~~---~~~~l~~l-----------------~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~-~~-~~~L~~L~l  229 (240)
                      +...++..   .+..++.+                 .+..+ +.|+.++++.+.+.+. +...+... .. .++|++|++
T Consensus       154 ~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~-~~~~l~~~l~~~~~~L~~L~L  232 (362)
T 3goz_A          154 SSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK-SYAELAYIFSSIPNHVVSLNL  232 (362)
T ss_dssp             CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS-CHHHHHHHHHHSCTTCCEEEC
T ss_pred             HHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh-HHHHHHHHHhcCCCCceEEEC
Confidence            77666543   11112221                 11223 3677777777766654 22222211 22 357777777


Q ss_pred             hhhh
Q 026356          230 IETI  233 (240)
Q Consensus       230 ~~c~  233 (240)
                      ++|.
T Consensus       233 s~N~  236 (362)
T 3goz_A          233 CLNC  236 (362)
T ss_dssp             CSSC
T ss_pred             cCCC
Confidence            7664

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.49  E-value=2.9e-12  Score=98.52  Aligned_cols=125  Identities=16%  Similarity=0.109  Sum_probs=106.2

Q ss_pred             hhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHh---cCCCCCEEEecCCCCCCHH
Q 026356           44 IPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS---TCPELKVFSIYWNVRVTDI  120 (240)
Q Consensus        44 ~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~  120 (240)
                      +...++|++|++++|..+++.++..++... ...++|++|++++| .+++.+...++.   ..++|++|++++| .+++.
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L-~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~  108 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEAL-KTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN-FISGS  108 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHH-TTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHH-HhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHH
Confidence            357899999999995489999999999876 56789999999996 899999887765   4678999999988 79999


Q ss_pred             HHHHHHHc---CCcCCEEec--cCCCCCCHHHHHHHHH---hCCCCcEEeccCCCCCCHHH
Q 026356          121 GIQHLVKN---CKHIIDLNL--SGCKNLLDKSLQLIAD---NYQELESLNLTRYVNMILLG  173 (240)
Q Consensus       121 ~~~~l~~~---~~~L~~L~l--~~c~~ltd~~l~~l~~---~~~~L~~L~l~~c~~it~~~  173 (240)
                      |+..+++.   .++|++|++  +++ .+++++...++.   ..++|++|++++| .+++.|
T Consensus       109 g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n-~i~~~~  167 (185)
T 1io0_A          109 GILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFT-QQGPRL  167 (185)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCS-SHHHHH
T ss_pred             HHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCC-CCChHH
Confidence            98888764   458999999  778 899998877665   4689999999995 788876

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.39  E-value=1e-11  Score=95.42  Aligned_cols=130  Identities=17%  Similarity=0.102  Sum_probs=105.8

Q ss_pred             CCCCCccEEecCCCCCCcHHHHHHHHh---cCCCCCEEEecCCCCCCHHHHHHHHH---cCCcCCEEeccCCCCCCHHHH
Q 026356           75 GSLQDLESLNLNGCQKISDKGIEIISS---TCPELKVFSIYWNVRVTDIGIQHLVK---NCKHIIDLNLSGCKNLLDKSL  148 (240)
Q Consensus        75 ~~~~~L~~L~l~~c~~l~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~c~~ltd~~l  148 (240)
                      ...+.|++|++++|..+++.++..++.   .+++|++|++++| .+++.+...+++   ..++|++|++++| .|++.++
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~  110 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGI  110 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHH
Confidence            456999999999965999999888876   4678999999998 799999877765   4579999999999 8999999


Q ss_pred             HHHHHh---CCCCcEEec--cCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCchhHHHHHH
Q 026356          149 QLIADN---YQELESLNL--TRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYII  216 (240)
Q Consensus       149 ~~l~~~---~~~L~~L~l--~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~  216 (240)
                      ..++..   .++|++|++  ++ +.+++.|...++..         +...+.|+.++++++.+.+...++..+
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~---------L~~n~~L~~L~L~~n~i~~~~~i~~~L  173 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANM---------LEKNTTLLKFGYHFTQQGPRLRASNAM  173 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHH---------HHHCSSCCEEECCCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHH---------HHhCCCcCEEeccCCCCChHHHHHHHH
Confidence            888864   678999999  66 58999999888753         233567999999999887764444443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=99.15  E-value=3.3e-09  Score=81.70  Aligned_cols=127  Identities=15%  Similarity=0.201  Sum_probs=104.1

Q ss_pred             hHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHh---cCCCCCEEEec
Q 026356           36 NRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS---TCPELKVFSIY  112 (240)
Q Consensus        36 ~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~---~~~~L~~L~l~  112 (240)
                      ++.+..+ +.+.+.|++|++++.+.|.+.+...+++.. ...+.|+.|+|++| .++|.+.+.|+.   .-+.|++|+|+
T Consensus        30 ~~~l~~l-l~~n~~L~~L~L~~nn~igd~ga~~la~aL-~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~  106 (197)
T 1pgv_A           30 ESCINRL-REDDTDLKEVNINNMKRVSKERIRSLIEAA-CNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVE  106 (197)
T ss_dssp             HHHHHHH-HTTCSSCCEEECTTCCSSCHHHHHHHHHHH-TTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECC
T ss_pred             HHHHHHH-HhcCCCccEEECCCCCCCCHHHHHHHHHHH-hhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecC
Confidence            4455544 347789999999985589999999999987 57789999999996 999999887775   46789999999


Q ss_pred             CCCCCCHHHHHHHHHcCC---cCCEEeccCCC--CCCHHHHHHHHH---hCCCCcEEeccCC
Q 026356          113 WNVRVTDIGIQHLVKNCK---HIIDLNLSGCK--NLLDKSLQLIAD---NYQELESLNLTRY  166 (240)
Q Consensus       113 ~~~~l~~~~~~~l~~~~~---~L~~L~l~~c~--~ltd~~l~~l~~---~~~~L~~L~l~~c  166 (240)
                      ++ .+++.|...+++.+.   .|++|+++++.  .+++.+...++.   ..+.|+.|+++++
T Consensus       107 ~N-~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          107 SN-FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             SS-BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             CC-cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence            87 899999999987654   79999998763  578877666554   4678999999874

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.01  E-value=5.2e-10  Score=82.35  Aligned_cols=128  Identities=16%  Similarity=0.289  Sum_probs=76.4

Q ss_pred             CeEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhc
Q 026356           23 PKVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST  102 (240)
Q Consensus        23 ~~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~  102 (240)
                      .+.|++++|... +..+... ...+++|+.|+++++ .+.+.      . ....+++|+.|+++++ .++.. +......
T Consensus        19 l~~L~l~~n~l~-~~~~~~~-~~~l~~L~~L~l~~n-~l~~~------~-~~~~l~~L~~L~Ls~n-~i~~~-~~~~~~~   86 (149)
T 2je0_A           19 VKELVLDNSRSN-EGKLEGL-TDEFEELEFLSTINV-GLTSI------A-NLPKLNKLKKLELSDN-RVSGG-LEVLAEK   86 (149)
T ss_dssp             CSEEECTTCBCB-TTBCCSC-CTTCTTCCEEECTTS-CCCCC------T-TCCCCTTCCEEECCSS-CCCSC-THHHHHH
T ss_pred             CeEEEccCCcCC-hhHHHHH-HhhcCCCcEEECcCC-CCCCc------h-hhhcCCCCCEEECCCC-cccch-HHHHhhh
Confidence            345888877632 1112221 246778888888874 45543      1 1355678888888885 55542 2223334


Q ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHH--HHHHHhCCCCcEEecc
Q 026356          103 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSL--QLIADNYQELESLNLT  164 (240)
Q Consensus       103 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l--~~l~~~~~~L~~L~l~  164 (240)
                      +++|++|+++++ .+++.........+++|+.|++++| .+++...  ......+++|+.|+++
T Consensus        87 l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           87 CPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence            778888888876 5665433333456778888888887 5654332  1233457778887775

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.01  E-value=3.5e-11  Score=93.08  Aligned_cols=152  Identities=15%  Similarity=0.140  Sum_probs=105.3

Q ss_pred             hcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHH
Q 026356           45 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH  124 (240)
Q Consensus        45 ~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~  124 (240)
                      ..+++|+.|++++ +.+.+..  .+     ..+++|++|++++| .+++.  ..+. .+++|++|+++++ .+++.....
T Consensus        41 ~~l~~L~~L~l~~-n~i~~l~--~l-----~~l~~L~~L~l~~n-~~~~~--~~l~-~l~~L~~L~l~~n-~l~~~~~~~  107 (197)
T 4ezg_A           41 AQMNSLTYITLAN-INVTDLT--GI-----EYAHNIKDLTINNI-HATNY--NPIS-GLSNLERLRIMGK-DVTSDKIPN  107 (197)
T ss_dssp             HHHHTCCEEEEES-SCCSCCT--TG-----GGCTTCSEEEEESC-CCSCC--GGGT-TCTTCCEEEEECT-TCBGGGSCC
T ss_pred             hhcCCccEEeccC-CCccChH--HH-----hcCCCCCEEEccCC-CCCcc--hhhh-cCCCCCEEEeECC-ccCcccChh
Confidence            3667889999988 4565321  11     23488999999987 55442  2233 4888999999987 566544444


Q ss_pred             HHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCC
Q 026356          125 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSS  204 (240)
Q Consensus       125 l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~  204 (240)
                      + ..+++|+.|++++| .+++.....+. .+++|+.|++++|..+++.             .  .+.+++.|+.++++.+
T Consensus       108 l-~~l~~L~~L~Ls~n-~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~-------------~--~l~~l~~L~~L~l~~n  169 (197)
T 4ezg_A          108 L-SGLTSLTLLDISHS-AHDDSILTKIN-TLPKVNSIDLSYNGAITDI-------------M--PLKTLPELKSLNIQFD  169 (197)
T ss_dssp             C-TTCTTCCEEECCSS-BCBGGGHHHHT-TCSSCCEEECCSCTBCCCC-------------G--GGGGCSSCCEEECTTB
T ss_pred             h-cCCCCCCEEEecCC-ccCcHhHHHHh-hCCCCCEEEccCCCCcccc-------------H--hhcCCCCCCEEECCCC
Confidence            4 36789999999999 78876565554 5889999999987436552             1  2456788889999888


Q ss_pred             CCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356          205 NGGDHLAFAYIIETNTYKHGKEKHIIETI  233 (240)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  233 (240)
                      .+.+..    .+  ..+++|+.|++.+.+
T Consensus       170 ~i~~~~----~l--~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          170 GVHDYR----GI--EDFPKLNQLYAFSQT  192 (197)
T ss_dssp             CCCCCT----TG--GGCSSCCEEEECBC-
T ss_pred             CCcChH----Hh--ccCCCCCEEEeeCcc
Confidence            887752    22  678889999887654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.98  E-value=3e-09  Score=89.98  Aligned_cols=149  Identities=12%  Similarity=0.162  Sum_probs=78.7

Q ss_pred             cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHh-cCCCCCEEEecCCCC--CCHH--
Q 026356           46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS-TCPELKVFSIYWNVR--VTDI--  120 (240)
Q Consensus        46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~-~~~~L~~L~l~~~~~--l~~~--  120 (240)
                      .+|+|+.|+++++..+.-..         -.+++|++|++..| .+++.++..++. .+|+|++|+|+.+.+  ..+.  
T Consensus       170 ~~P~L~~L~L~g~~~l~l~~---------~~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~  239 (362)
T 2ra8_A          170 AMPLLNNLKIKGTNNLSIGK---------KPRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM  239 (362)
T ss_dssp             TCTTCCEEEEECCBTCBCCS---------CBCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred             cCCCCcEEEEeCCCCceecc---------ccCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence            56677777776642221100         11366777777664 566666666654 466777776642111  1111  


Q ss_pred             -HHHHHH--HcCCcCCEEeccCCCCCCHHHHHHHHH--hCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCcc
Q 026356          121 -GIQHLV--KNCKHIIDLNLSGCKNLLDKSLQLIAD--NYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRF  195 (240)
Q Consensus       121 -~~~~l~--~~~~~L~~L~l~~c~~ltd~~l~~l~~--~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~  195 (240)
                       .+..+.  ..+|+|+.|++++| .+++.+...++.  .+|+|+.|++++ +.+++.|...+..+    +     ..+++
T Consensus       240 ~~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~----L-----~~l~~  308 (362)
T 2ra8_A          240 NVFRPLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDH----V-----DKIKH  308 (362)
T ss_dssp             GGTGGGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTT----H-----HHHTT
T ss_pred             HHHHHHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhh----c-----ccCCc
Confidence             111111  23566777777666 566655555554  355667777765 35666666555432    1     12345


Q ss_pred             ceeecccCCCCCchhHHHHHH
Q 026356          196 FQAVQINSSNGGDHLAFAYII  216 (240)
Q Consensus       196 L~~l~l~~~~~~~~~~~~~~~  216 (240)
                      |+.++++.+.+.+. ....+.
T Consensus       309 L~~L~L~~n~i~d~-~~~~l~  328 (362)
T 2ra8_A          309 LKFINMKYNYLSDE-MKKELQ  328 (362)
T ss_dssp             CSEEECCSBBCCHH-HHHHHH
T ss_pred             ceEEECCCCcCCHH-HHHHHH
Confidence            66666666666555 344444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.98  E-value=5.9e-10  Score=93.28  Aligned_cols=37  Identities=5%  Similarity=0.125  Sum_probs=22.1

Q ss_pred             cCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356          191 HGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  233 (240)
Q Consensus       191 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  233 (240)
                      .+++.|+.++++.+.+.+...    +  ..+++|++|++.+|+
T Consensus       308 ~~l~~L~~L~L~~n~l~~~~~----~--~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          308 GGLTNLTTLFLSQNHITDIRP----L--ASLSKMDSADFANQV  344 (347)
T ss_dssp             HTCTTCSEEECCSSSCCCCGG----G--GGCTTCSEESSSCC-
T ss_pred             hccccCCEEEccCCccccccC----h--hhhhccceeehhhhc
Confidence            445666677776666665522    2  456777777776654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.94  E-value=2.7e-11  Score=100.37  Aligned_cols=36  Identities=0%  Similarity=-0.121  Sum_probs=25.3

Q ss_pred             ccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhhh
Q 026356          194 RFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKT  235 (240)
Q Consensus       194 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~  235 (240)
                      +.|+.++++.+.+.+. .  . +  ..+++|++|++.+++-.
T Consensus       274 ~~L~~L~Ls~N~l~~~-p--~-~--~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          274 AKLSVLDLSYNRLDRN-P--S-P--DELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             SEEEEEECCSSCCCSC-C--C-T--TTSCEEEEEECTTCTTT
T ss_pred             CCceEEECCCCCCCCC-h--h-H--hhCCCCCEEeccCCCCC
Confidence            5678888888877665 1  1 3  56788888888877643

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.93  E-value=5.7e-10  Score=86.18  Aligned_cols=149  Identities=16%  Similarity=0.191  Sum_probs=106.1

Q ss_pred             eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356           24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC  103 (240)
Q Consensus        24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~  103 (240)
                      +.|+++++....   +.  .+..+++|++|++++| .+.+..  .     ...+++|++|+++++ .+++.....++ .+
T Consensus        47 ~~L~l~~n~i~~---l~--~l~~l~~L~~L~l~~n-~~~~~~--~-----l~~l~~L~~L~l~~n-~l~~~~~~~l~-~l  111 (197)
T 4ezg_A           47 TYITLANINVTD---LT--GIEYAHNIKDLTINNI-HATNYN--P-----ISGLSNLERLRIMGK-DVTSDKIPNLS-GL  111 (197)
T ss_dssp             CEEEEESSCCSC---CT--TGGGCTTCSEEEEESC-CCSCCG--G-----GTTCTTCCEEEEECT-TCBGGGSCCCT-TC
T ss_pred             cEEeccCCCccC---hH--HHhcCCCCCEEEccCC-CCCcch--h-----hhcCCCCCEEEeECC-ccCcccChhhc-CC
Confidence            349999887432   22  2458899999999996 555432  1     245699999999995 77765554444 48


Q ss_pred             CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChh
Q 026356          104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNIL  183 (240)
Q Consensus       104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~  183 (240)
                      ++|++|+++++ .+++.....+ ..+++|++|++++|..+++..  . ...+++|+.|++++| .+++..          
T Consensus       112 ~~L~~L~Ls~n-~i~~~~~~~l-~~l~~L~~L~L~~n~~i~~~~--~-l~~l~~L~~L~l~~n-~i~~~~----------  175 (197)
T 4ezg_A          112 TSLTLLDISHS-AHDDSILTKI-NTLPKVNSIDLSYNGAITDIM--P-LKTLPELKSLNIQFD-GVHDYR----------  175 (197)
T ss_dssp             TTCCEEECCSS-BCBGGGHHHH-TTCSSCCEEECCSCTBCCCCG--G-GGGCSSCCEEECTTB-CCCCCT----------
T ss_pred             CCCCEEEecCC-ccCcHhHHHH-hhCCCCCEEEccCCCCccccH--h-hcCCCCCCEEECCCC-CCcChH----------
Confidence            99999999987 6877665555 478999999999994376643  2 246899999999996 666511          


Q ss_pred             hhhHHHhcCCccceeecccCCCCCc
Q 026356          184 LMSEFIYHGIRFFQAVQINSSNGGD  208 (240)
Q Consensus       184 ~l~~l~~~~~~~L~~l~l~~~~~~~  208 (240)
                           .+.+++.|+.++++.+.+.+
T Consensus       176 -----~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          176 -----GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             -----TGGGCSSCCEEEECBC----
T ss_pred             -----HhccCCCCCEEEeeCcccCC
Confidence                 23567889999998887654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.91  E-value=3.8e-11  Score=98.02  Aligned_cols=192  Identities=11%  Similarity=0.033  Sum_probs=90.2

Q ss_pred             EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCC
Q 026356           25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCP  104 (240)
Q Consensus        25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~  104 (240)
                      .|+++++.. ......  .+..+++|++|++++ +.+.......     ...+++|++|+++++..++......+ ..++
T Consensus        36 ~L~l~~n~i-~~~~~~--~~~~~~~L~~L~l~~-n~l~~~~~~~-----~~~l~~L~~L~l~~n~~l~~~~~~~~-~~l~  105 (285)
T 1ozn_A           36 RIFLHGNRI-SHVPAA--SFRACRNLTILWLHS-NVLARIDAAA-----FTGLALLEQLDLSDNAQLRSVDPATF-HGLG  105 (285)
T ss_dssp             EEECTTSCC-CEECTT--TTTTCTTCCEEECCS-SCCCEECTTT-----TTTCTTCCEEECCSCTTCCCCCTTTT-TTCT
T ss_pred             EEEeeCCcC-CccCHH--HcccCCCCCEEECCC-CccceeCHhh-----cCCccCCCEEeCCCCCCccccCHHHh-cCCc
Confidence            367766652 211111  123566677777766 3344321111     13346666666666422332211111 1355


Q ss_pred             CCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhh
Q 026356          105 ELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILL  184 (240)
Q Consensus       105 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~  184 (240)
                      +|++|+++++ .++.... .....+++|++|+++++ .++......+ ..+++|+.|+++++ .++......+. +.+ .
T Consensus       106 ~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~~-~l~-~  178 (285)
T 1ozn_A          106 RLHTLHLDRC-GLQELGP-GLFRGLAALQYLYLQDN-ALQALPDDTF-RDLGNLTHLFLHGN-RISSVPERAFR-GLH-S  178 (285)
T ss_dssp             TCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCEECTTTTT-TCT-T
T ss_pred             CCCEEECCCC-cCCEECH-hHhhCCcCCCEEECCCC-cccccCHhHh-ccCCCccEEECCCC-cccccCHHHhc-Ccc-c
Confidence            6666666654 2322111 11234455666666655 3432211111 23455555555553 33321110000 000 0


Q ss_pred             hhH-------------HHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhhhhc
Q 026356          185 MSE-------------FIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQ  237 (240)
Q Consensus       185 l~~-------------l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~d  237 (240)
                      ++.             -.+.+++.|+.++++.+.+.+..  ...+  ..+++|+.|++++++-..|
T Consensus       179 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~--~~l~~L~~L~l~~N~~~c~  240 (285)
T 1ozn_A          179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP--TEAL--APLRALQYLRLNDNPWVCD  240 (285)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC--HHHH--TTCTTCCEEECCSSCEECS
T ss_pred             cCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC--HHHc--ccCcccCEEeccCCCccCC
Confidence            111             13355677888888888777652  2334  5788999999888765543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.90  E-value=1.1e-09  Score=90.60  Aligned_cols=173  Identities=12%  Similarity=0.131  Sum_probs=89.3

Q ss_pred             EeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCC
Q 026356           26 IDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPE  105 (240)
Q Consensus        26 L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~  105 (240)
                      |+++++....   +..  +..+++|+.|+++++ .+.+...       ...+++|+.|+++++ .+++.  ..+ ..+++
T Consensus        46 L~l~~~~i~~---l~~--~~~l~~L~~L~L~~n-~i~~~~~-------~~~l~~L~~L~L~~n-~l~~~--~~~-~~l~~  108 (308)
T 1h6u_A           46 LSAFGTGVTT---IEG--VQYLNNLIGLELKDN-QITDLAP-------LKNLTKITELELSGN-PLKNV--SAI-AGLQS  108 (308)
T ss_dssp             EECTTSCCCC---CTT--GGGCTTCCEEECCSS-CCCCCGG-------GTTCCSCCEEECCSC-CCSCC--GGG-TTCTT
T ss_pred             EEeeCCCccC---chh--hhccCCCCEEEccCC-cCCCChh-------HccCCCCCEEEccCC-cCCCc--hhh-cCCCC
Confidence            7777665322   111  236677777777764 3443221       133466777777764 44432  122 23666


Q ss_pred             CCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhh
Q 026356          106 LKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLM  185 (240)
Q Consensus       106 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l  185 (240)
                      |++|+++++ .+++..  . ...+++|++|++++| .+++...   ...+++|+.|++++| .+++...  + ...+. +
T Consensus       109 L~~L~l~~n-~l~~~~--~-l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n-~l~~~~~--l-~~l~~-L  175 (308)
T 1h6u_A          109 IKTLDLTST-QITDVT--P-LAGLSNLQVLYLDLN-QITNISP---LAGLTNLQYLSIGNA-QVSDLTP--L-ANLSK-L  175 (308)
T ss_dssp             CCEEECTTS-CCCCCG--G-GTTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECCSS-CCCCCGG--G-TTCTT-C
T ss_pred             CCEEECCCC-CCCCch--h-hcCCCCCCEEECCCC-ccCcCcc---ccCCCCccEEEccCC-cCCCChh--h-cCCCC-C
Confidence            666666665 343311  1 235566666666666 4443221   234566666666664 3433111  0 01000 1


Q ss_pred             hHH-----------HhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhh
Q 026356          186 SEF-----------IYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK  234 (240)
Q Consensus       186 ~~l-----------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  234 (240)
                      +.+           .+..++.|+.++++.+.+.+...    +  ..+++|+.|++++++-
T Consensus       176 ~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~----l--~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          176 TTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP----L--ANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             CEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGG----G--TTCTTCCEEEEEEEEE
T ss_pred             CEEECCCCccCcChhhcCCCCCCEEEccCCccCcccc----c--cCCCCCCEEEccCCee
Confidence            111           13456677778887777766531    2  5677888888777653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.89  E-value=4e-08  Score=75.68  Aligned_cols=130  Identities=13%  Similarity=0.107  Sum_probs=98.9

Q ss_pred             CCCCCccEEecCCCCCCcHHHHHHHHhc---CCCCCEEEecCCCCCCHHHHHHHHH---cCCcCCEEeccCCCCCCHHHH
Q 026356           75 GSLQDLESLNLNGCQKISDKGIEIISST---CPELKVFSIYWNVRVTDIGIQHLVK---NCKHIIDLNLSGCKNLLDKSL  148 (240)
Q Consensus        75 ~~~~~L~~L~l~~c~~l~~~~~~~l~~~---~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~c~~ltd~~l  148 (240)
                      ...+.|++|++++...+.+.+.+.++..   -..|++|+|++| .++|.+...+++   .-+.|++|+++++ .|++.+.
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga  115 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN-FLTPELL  115 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHH
Confidence            4558999999998558999998888763   457999999988 899999877765   4468999999999 8999999


Q ss_pred             HHHHHh---CCCCcEEeccCCC--CCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCchhHHHHH
Q 026356          149 QLIADN---YQELESLNLTRYV--NMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYI  215 (240)
Q Consensus       149 ~~l~~~---~~~L~~L~l~~c~--~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~  215 (240)
                      ..|++.   .+.|+.|+|+++.  .+++.|...++..    +     ..-+.|..++++++.+.....++..
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~a----L-----~~N~tL~~L~l~~~~~g~~~~ia~a  178 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMA----I-----EENESLLRVGISFASMEARHRVSEA  178 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHH----H-----HHCSSCCEEECCCCCHHHHHHHHHH
T ss_pred             HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHH----H-----HhCCCcCeEeccCCCccHHHHHHHH
Confidence            999875   4579999998652  5788887777653    2     2234577788876665544333333

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.88  E-value=6.6e-09  Score=87.90  Aligned_cols=146  Identities=15%  Similarity=0.202  Sum_probs=107.7

Q ss_pred             cCeE--EeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCC--CcHHHHH
Q 026356           22 VPKV--IDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQK--ISDKGIE   97 (240)
Q Consensus        22 ~~~~--L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~--l~~~~~~   97 (240)
                      +|.+  |+++++....   +..  . ..++|++|+|..| .+++.++..++.   ..+|+|++|+|+.+..  ..+.+++
T Consensus       171 ~P~L~~L~L~g~~~l~---l~~--~-~~~~L~~L~L~~~-~l~~~~l~~l~~---~~lp~L~~L~L~~~~~~~~~~~~~~  240 (362)
T 2ra8_A          171 MPLLNNLKIKGTNNLS---IGK--K-PRPNLKSLEIISG-GLPDSVVEDILG---SDLPNLEKLVLYVGVEDYGFDGDMN  240 (362)
T ss_dssp             CTTCCEEEEECCBTCB---CCS--C-BCTTCSEEEEECS-BCCHHHHHHHHH---SBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred             CCCCcEEEEeCCCCce---ecc--c-cCCCCcEEEEecC-CCChHHHHHHHH---ccCCCCcEEEEeccccccccchhHH
Confidence            3444  9998874221   111  1 4789999999985 699999988875   2459999999864211  1111122


Q ss_pred             HHH-----hcCCCCCEEEecCCCCCCHHHHHHHHH--cCCcCCEEeccCCCCCCHHHHHHHHH---hCCCCcEEeccCCC
Q 026356           98 IIS-----STCPELKVFSIYWNVRVTDIGIQHLVK--NCKHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTRYV  167 (240)
Q Consensus        98 ~l~-----~~~~~L~~L~l~~~~~l~~~~~~~l~~--~~~~L~~L~l~~c~~ltd~~l~~l~~---~~~~L~~L~l~~c~  167 (240)
                      .++     ..+|+|+.|++.+| .+++.+...+++  .+|+|++|+++++ .+++.+...++.   ++++|+.|++++| 
T Consensus       241 ~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n-  317 (362)
T 2ra8_A          241 VFRPLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYN-  317 (362)
T ss_dssp             GTGGGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSB-
T ss_pred             HHHHHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCC-
Confidence            121     25899999999988 788888777775  6789999999988 899998888764   4789999999986 


Q ss_pred             CCCHHHHHHHHHh
Q 026356          168 NMILLGLFYIWSN  180 (240)
Q Consensus       168 ~it~~~~~~l~~~  180 (240)
                      .+++.++..+...
T Consensus       318 ~i~d~~~~~l~~a  330 (362)
T 2ra8_A          318 YLSDEMKKELQKS  330 (362)
T ss_dssp             BCCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHH
Confidence            7999999988764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.86  E-value=1.3e-10  Score=100.82  Aligned_cols=63  Identities=19%  Similarity=0.250  Sum_probs=32.6

Q ss_pred             CCCCccEEecCCCCCCcHHHHHH-HHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCC
Q 026356           76 SLQDLESLNLNGCQKISDKGIEI-ISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGC  140 (240)
Q Consensus        76 ~~~~L~~L~l~~c~~l~~~~~~~-l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c  140 (240)
                      .+++|++|++++| .+++..... ....+++|++|+++++ .++......+...+++|++|+++++
T Consensus       101 ~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n  164 (455)
T 3v47_A          101 GLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFN  164 (455)
T ss_dssp             TCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred             CcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCC
Confidence            3466666666664 555433322 1123666667766665 3433222222345666777777666

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.85  E-value=1.3e-09  Score=90.04  Aligned_cols=158  Identities=11%  Similarity=0.130  Sum_probs=103.9

Q ss_pred             hcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHH
Q 026356           45 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH  124 (240)
Q Consensus        45 ~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~  124 (240)
                      ..+++|++|+++++ .+.+..  .     ...+++|+.|+++++ .+++..-   ...+++|++|+++++ .+++..  .
T Consensus        38 ~~l~~L~~L~l~~~-~i~~l~--~-----~~~l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~L~~n-~l~~~~--~  102 (308)
T 1h6u_A           38 ADLDGITTLSAFGT-GVTTIE--G-----VQYLNNLIGLELKDN-QITDLAP---LKNLTKITELELSGN-PLKNVS--A  102 (308)
T ss_dssp             HHHHTCCEEECTTS-CCCCCT--T-----GGGCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSC-CCSCCG--G
T ss_pred             HHcCCcCEEEeeCC-CccCch--h-----hhccCCCCEEEccCC-cCCCChh---HccCCCCCEEEccCC-cCCCch--h
Confidence            36789999999995 455421  1     134599999999996 6654322   346899999999988 455421  2


Q ss_pred             HHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHH-----------HhcCC
Q 026356          125 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEF-----------IYHGI  193 (240)
Q Consensus       125 l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l-----------~~~~~  193 (240)
                       ...+++|+.|++++| .+++..  . ...+++|+.|++++| .+++...  + ...+ .++.+           .+.++
T Consensus       103 -~~~l~~L~~L~l~~n-~l~~~~--~-l~~l~~L~~L~l~~n-~l~~~~~--l-~~l~-~L~~L~l~~n~l~~~~~l~~l  172 (308)
T 1h6u_A          103 -IAGLQSIKTLDLTST-QITDVT--P-LAGLSNLQVLYLDLN-QITNISP--L-AGLT-NLQYLSIGNAQVSDLTPLANL  172 (308)
T ss_dssp             -GTTCTTCCEEECTTS-CCCCCG--G-GTTCTTCCEEECCSS-CCCCCGG--G-GGCT-TCCEEECCSSCCCCCGGGTTC
T ss_pred             -hcCCCCCCEEECCCC-CCCCch--h-hcCCCCCCEEECCCC-ccCcCcc--c-cCCC-CccEEEccCCcCCCChhhcCC
Confidence             346889999999999 677632  2 246899999999996 5554221  1 1111 12221           14556


Q ss_pred             ccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356          194 RFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  233 (240)
Q Consensus       194 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  233 (240)
                      +.|+.++++.+.+.+...    +  ..+++|+.|++++|.
T Consensus       173 ~~L~~L~l~~n~l~~~~~----l--~~l~~L~~L~L~~N~  206 (308)
T 1h6u_A          173 SKLTTLKADDNKISDISP----L--ASLPNLIEVHLKNNQ  206 (308)
T ss_dssp             TTCCEEECCSSCCCCCGG----G--GGCTTCCEEECTTSC
T ss_pred             CCCCEEECCCCccCcChh----h--cCCCCCCEEEccCCc
Confidence            667777777777765532    2  567788888877764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.85  E-value=6e-11  Score=98.15  Aligned_cols=63  Identities=17%  Similarity=0.177  Sum_probs=29.8

Q ss_pred             CCCCCEEEecCCCCCCHHHHHHH--HHcCCcCCEEeccCCCCCCH--HHHHHHHHhCCCCcEEeccCC
Q 026356          103 CPELKVFSIYWNVRVTDIGIQHL--VKNCKHIIDLNLSGCKNLLD--KSLQLIADNYQELESLNLTRY  166 (240)
Q Consensus       103 ~~~L~~L~l~~~~~l~~~~~~~l--~~~~~~L~~L~l~~c~~ltd--~~l~~l~~~~~~L~~L~l~~c  166 (240)
                      +++|++|+++++.-.++.++...  ...+++|++|++++| .++.  .....+...+++|++|+++++
T Consensus       168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N  234 (310)
T 4glp_A          168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHN  234 (310)
T ss_dssp             CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTS
T ss_pred             CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCC
Confidence            45566666665522222222211  134556666666666 4542  222223344566666666663

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.85  E-value=3e-09  Score=88.99  Aligned_cols=41  Identities=7%  Similarity=0.141  Sum_probs=30.0

Q ss_pred             hcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhh
Q 026356          190 YHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK  234 (240)
Q Consensus       190 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  234 (240)
                      +.+++.|+.++++.+.+.+. .. ..+  ..+++|+.|++++|+-
T Consensus       283 ~~~l~~L~~L~L~~n~l~~~-~~-~~l--~~l~~L~~L~L~~n~l  323 (347)
T 4fmz_A          283 LNNLSQLNSLFLNNNQLGNE-DM-EVI--GGLTNLTTLFLSQNHI  323 (347)
T ss_dssp             GGGCTTCSEEECCSSCCCGG-GH-HHH--HTCTTCSEEECCSSSC
T ss_pred             hcCCCCCCEEECcCCcCCCc-Ch-hHh--hccccCCEEEccCCcc
Confidence            35677888999988887765 22 233  4788999999988863

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.81  E-value=1.9e-10  Score=93.42  Aligned_cols=172  Identities=14%  Similarity=0.131  Sum_probs=92.8

Q ss_pred             EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCC
Q 026356           25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCP  104 (240)
Q Consensus        25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~  104 (240)
                      .|++.++.....   ..  +..+++|++|+++++ .+.+.  ..     ...+++|++|+++++ .++...-..+ ..++
T Consensus        45 ~L~l~~~~i~~~---~~--l~~l~~L~~L~l~~n-~l~~~--~~-----l~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~  109 (272)
T 3rfs_A           45 QIIANNSDIKSV---QG--IQYLPNVRYLALGGN-KLHDI--SA-----LKELTNLTYLILTGN-QLQSLPNGVF-DKLT  109 (272)
T ss_dssp             EEECTTSCCCCC---TT--GGGCTTCCEEECTTS-CCCCC--GG-----GTTCTTCCEEECTTS-CCCCCCTTTT-TTCT
T ss_pred             eeeeCCCCcccc---cc--cccCCCCcEEECCCC-CCCCc--hh-----hcCCCCCCEEECCCC-ccCccChhHh-cCCc
Confidence            377777663321   22  346788888888874 45542  11     245578888888885 5543221111 2477


Q ss_pred             CCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhh
Q 026356          105 ELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILL  184 (240)
Q Consensus       105 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~  184 (240)
                      +|++|+++++ .++...- .....+++|+.|++++| .++..... ....+++|+.|++++| .+++..        +. 
T Consensus       110 ~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~--------~~-  175 (272)
T 3rfs_A          110 NLKELVLVEN-QLQSLPD-GVFDKLTNLTYLNLAHN-QLQSLPKG-VFDKLTNLTELDLSYN-QLQSLP--------EG-  175 (272)
T ss_dssp             TCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCCCC--------TT-
T ss_pred             CCCEEECCCC-cCCccCH-HHhccCCCCCEEECCCC-ccCccCHH-HhccCccCCEEECCCC-CcCccC--------HH-
Confidence            7888888876 4442111 11235677888888887 56532211 1134677888888875 444210        00 


Q ss_pred             hhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356          185 MSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  233 (240)
Q Consensus       185 l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  233 (240)
                          .+.+++.|+.++++.+.+.....  ..+  ..+++|+.|++.+++
T Consensus       176 ----~~~~l~~L~~L~L~~N~l~~~~~--~~~--~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          176 ----VFDKLTQLKDLRLYQNQLKSVPD--GVF--DRLTSLQYIWLHDNP  216 (272)
T ss_dssp             ----TTTTCTTCCEEECCSSCCSCCCT--TTT--TTCTTCCEEECCSSC
T ss_pred             ----HhcCCccCCEEECCCCcCCccCH--HHH--hCCcCCCEEEccCCC
Confidence                22445566666666555554311  111  345555555555443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.79  E-value=3.4e-09  Score=86.90  Aligned_cols=163  Identities=18%  Similarity=0.197  Sum_probs=112.3

Q ss_pred             eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356           24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC  103 (240)
Q Consensus        24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~  103 (240)
                      +.|++++|....-   ..  +..+++|+.|+++++ .+.+..-       ...+++|+.|+++++ .+++  +.. ...+
T Consensus        49 ~~L~l~~~~i~~~---~~--~~~l~~L~~L~L~~n-~l~~~~~-------l~~l~~L~~L~l~~n-~l~~--~~~-l~~l  111 (291)
T 1h6t_A           49 DQIIANNSDIKSV---QG--IQYLPNVTKLFLNGN-KLTDIKP-------LANLKNLGWLFLDEN-KVKD--LSS-LKDL  111 (291)
T ss_dssp             CEEECTTSCCCCC---TT--GGGCTTCCEEECCSS-CCCCCGG-------GTTCTTCCEEECCSS-CCCC--GGG-GTTC
T ss_pred             cEEEccCCCcccC---hh--HhcCCCCCEEEccCC-ccCCCcc-------cccCCCCCEEECCCC-cCCC--Chh-hccC
Confidence            3488888764322   22  347889999999984 5554221       245689999999995 6655  222 2358


Q ss_pred             CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChh
Q 026356          104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNIL  183 (240)
Q Consensus       104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~  183 (240)
                      ++|++|+++++ .+++.  . -...+++|+.|++++| .+++.  ..+ ..+++|+.|++++| .+++..          
T Consensus       112 ~~L~~L~L~~n-~i~~~--~-~l~~l~~L~~L~l~~n-~l~~~--~~l-~~l~~L~~L~L~~N-~l~~~~----------  172 (291)
T 1h6t_A          112 KKLKSLSLEHN-GISDI--N-GLVHLPQLESLYLGNN-KITDI--TVL-SRLTKLDTLSLEDN-QISDIV----------  172 (291)
T ss_dssp             TTCCEEECTTS-CCCCC--G-GGGGCTTCCEEECCSS-CCCCC--GGG-GGCTTCSEEECCSS-CCCCCG----------
T ss_pred             CCCCEEECCCC-cCCCC--h-hhcCCCCCCEEEccCC-cCCcc--hhh-ccCCCCCEEEccCC-ccccch----------
Confidence            89999999987 55542  2 2346789999999999 67654  222 45889999999985 565421          


Q ss_pred             hhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356          184 LMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  233 (240)
Q Consensus       184 ~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  233 (240)
                           .+.+++.|+.++++.+.+.+...    +  ..+++|+.|++.+++
T Consensus       173 -----~l~~l~~L~~L~L~~N~i~~l~~----l--~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          173 -----PLAGLTKLQNLYLSKNHISDLRA----L--AGLKNLDVLELFSQE  211 (291)
T ss_dssp             -----GGTTCTTCCEEECCSSCCCBCGG----G--TTCTTCSEEEEEEEE
T ss_pred             -----hhcCCCccCEEECCCCcCCCChh----h--ccCCCCCEEECcCCc
Confidence                 14567889999999888877521    3  678899999988765

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.79  E-value=6.4e-10  Score=91.94  Aligned_cols=177  Identities=14%  Similarity=0.044  Sum_probs=114.1

Q ss_pred             EeccCCCCCCh-HHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcH-HHHHHH--Hh
Q 026356           26 IDLREMNNAGN-RLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISD-KGIEII--SS  101 (240)
Q Consensus        26 L~l~~~~~~~~-~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~-~~~~~l--~~  101 (240)
                      |++++|..... ..+.......+++|++|+++++ .+.......     ...+++|++|+++++ .+.. .++..-  ..
T Consensus       122 L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~-----~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~  194 (310)
T 4glp_A          122 LRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQ-----VRAFPALTSLDLSDN-PGLGERGLMAALCPH  194 (310)
T ss_dssp             CEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTS-----CCCCTTCCEEECCSC-TTCHHHHHHTTSCTT
T ss_pred             EEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHH-----hccCCCCCEEECCCC-CCccchhhhHHHhhh
Confidence            77777764321 1122222336888999999884 453322111     245689999999996 5443 333211  13


Q ss_pred             cCCCCCEEEecCCCCCC--HHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHH--hCCCCcEEeccCCCCCCHHHHHHH
Q 026356          102 TCPELKVFSIYWNVRVT--DIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIAD--NYQELESLNLTRYVNMILLGLFYI  177 (240)
Q Consensus       102 ~~~~L~~L~l~~~~~l~--~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~--~~~~L~~L~l~~c~~it~~~~~~l  177 (240)
                      .+++|++|++++| .++  ......+...+++|++|+++++ .+++.....+..  ..++|+.|+++++ .++.     +
T Consensus       195 ~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~-----l  266 (310)
T 4glp_A          195 KFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFA-GLEQ-----V  266 (310)
T ss_dssp             SSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSS-CCCS-----C
T ss_pred             cCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCC-CCCc-----h
Confidence            6889999999998 676  3333445578899999999999 676542111211  1379999999995 6652     1


Q ss_pred             HHhChhhhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhh
Q 026356          178 WSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK  234 (240)
Q Consensus       178 ~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  234 (240)
                          +.       .-.+.|+.++++++.+... .   .+  ..+++|+.|++.+++-
T Consensus       267 ----p~-------~~~~~L~~L~Ls~N~l~~~-~---~~--~~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          267 ----PK-------GLPAKLRVLDLSSNRLNRA-P---QP--DELPEVDNLTLDGNPF  306 (310)
T ss_dssp             ----CS-------CCCSCCSCEECCSCCCCSC-C---CT--TSCCCCSCEECSSTTT
T ss_pred             ----hh-------hhcCCCCEEECCCCcCCCC-c---hh--hhCCCccEEECcCCCC
Confidence                11       1126789999999988864 1   12  5779999999988764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.78  E-value=2e-09  Score=80.79  Aligned_cols=108  Identities=27%  Similarity=0.326  Sum_probs=48.3

Q ss_pred             cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHH
Q 026356           46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL  125 (240)
Q Consensus        46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l  125 (240)
                      ..++|+.|++++| .+.+..+....    ..+++|+.|++++| .++..  ..+ ..+++|++|+++++ .++.. +..+
T Consensus        22 ~~~~L~~L~l~~n-~l~~~~i~~~~----~~l~~L~~L~l~~n-~l~~~--~~~-~~l~~L~~L~Ls~N-~l~~~-~~~~   90 (168)
T 2ell_A           22 TPAAVRELVLDNC-KSNDGKIEGLT----AEFVNLEFLSLINV-GLISV--SNL-PKLPKLKKLELSEN-RIFGG-LDML   90 (168)
T ss_dssp             CTTSCSEEECCSC-BCBTTBCSSCC----GGGGGCCEEEEESS-CCCCC--SSC-CCCSSCCEEEEESC-CCCSC-CCHH
T ss_pred             CcccCCEEECCCC-CCChhhHHHHH----HhCCCCCEEeCcCC-CCCCh--hhh-ccCCCCCEEECcCC-cCchH-HHHH
Confidence            3355666666664 34321111111    12356666666664 34432  111 23555666666555 33321 2223


Q ss_pred             HHcCCcCCEEeccCCCCCCHHHH-HHHHHhCCCCcEEeccCC
Q 026356          126 VKNCKHIIDLNLSGCKNLLDKSL-QLIADNYQELESLNLTRY  166 (240)
Q Consensus       126 ~~~~~~L~~L~l~~c~~ltd~~l-~~l~~~~~~L~~L~l~~c  166 (240)
                      ...+++|+.|++++| .+++... ..+ ..+++|+.|++++|
T Consensus        91 ~~~l~~L~~L~Ls~N-~l~~~~~~~~l-~~l~~L~~L~l~~N  130 (168)
T 2ell_A           91 AEKLPNLTHLNLSGN-KLKDISTLEPL-KKLECLKSLDLFNC  130 (168)
T ss_dssp             HHHCTTCCEEECBSS-SCCSSGGGGGG-SSCSCCCEEECCSS
T ss_pred             HhhCCCCCEEeccCC-ccCcchhHHHH-hcCCCCCEEEeeCC
Confidence            334555555555555 4443211 111 23555555555553

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.78  E-value=8.2e-11  Score=96.04  Aligned_cols=169  Identities=11%  Similarity=0.076  Sum_probs=100.2

Q ss_pred             cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHH
Q 026356           46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL  125 (240)
Q Consensus        46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l  125 (240)
                      ..++|++|++++ +.++......     ...+++|++|+++++ .++......+. .+++|++|+++++..++...... 
T Consensus        30 ~~~~l~~L~l~~-n~i~~~~~~~-----~~~~~~L~~L~l~~n-~l~~~~~~~~~-~l~~L~~L~l~~n~~l~~~~~~~-  100 (285)
T 1ozn_A           30 IPAASQRIFLHG-NRISHVPAAS-----FRACRNLTILWLHSN-VLARIDAAAFT-GLALLEQLDLSDNAQLRSVDPAT-  100 (285)
T ss_dssp             CCTTCSEEECTT-SCCCEECTTT-----TTTCTTCCEEECCSS-CCCEECTTTTT-TCTTCCEEECCSCTTCCCCCTTT-
T ss_pred             CCCCceEEEeeC-CcCCccCHHH-----cccCCCCCEEECCCC-ccceeCHhhcC-CccCCCEEeCCCCCCccccCHHH-
Confidence            456899999999 5566533222     245689999999995 66543222222 48999999999885354332222 


Q ss_pred             HHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHH-------------HhcC
Q 026356          126 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEF-------------IYHG  192 (240)
Q Consensus       126 ~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l-------------~~~~  192 (240)
                      ...+++|++|+++++ .++......+ ..+++|+.|+++++ .++......+. ..+ .++.+             .+.+
T Consensus       101 ~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~~-~l~-~L~~L~l~~n~l~~~~~~~~~~  175 (285)
T 1ozn_A          101 FHGLGRLHTLHLDRC-GLQELGPGLF-RGLAALQYLYLQDN-ALQALPDDTFR-DLG-NLTHLFLHGNRISSVPERAFRG  175 (285)
T ss_dssp             TTTCTTCCEEECTTS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCCCCTTTTT-TCT-TCCEEECCSSCCCEECTTTTTT
T ss_pred             hcCCcCCCEEECCCC-cCCEECHhHh-hCCcCCCEEECCCC-cccccCHhHhc-cCC-CccEEECCCCcccccCHHHhcC
Confidence            246789999999999 6664322222 35889999999995 55432111110 111 11111             1344


Q ss_pred             CccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhh
Q 026356          193 IRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIET  232 (240)
Q Consensus       193 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  232 (240)
                      ++.|+.++++.+.+.+..  ...+  ..+++|+.|+++++
T Consensus       176 l~~L~~L~l~~n~l~~~~--~~~~--~~l~~L~~L~l~~n  211 (285)
T 1ozn_A          176 LHSLDRLLLHQNRVAHVH--PHAF--RDLGRLMTLYLFAN  211 (285)
T ss_dssp             CTTCCEEECCSSCCCEEC--TTTT--TTCTTCCEEECCSS
T ss_pred             ccccCEEECCCCcccccC--HhHc--cCcccccEeeCCCC
Confidence            556666666666655431  1112  45667777777665

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.78  E-value=8e-11  Score=102.11  Aligned_cols=194  Identities=10%  Similarity=0.002  Sum_probs=115.0

Q ss_pred             eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCc-HHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhc
Q 026356           24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIE-DRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST  102 (240)
Q Consensus        24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~-~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~  102 (240)
                      +.|++++|.. ......  .+..+++|++|+++++. +. ......     ...+++|++|+++++ .++......+. .
T Consensus        33 ~~L~Ls~n~i-~~~~~~--~~~~l~~L~~L~L~~n~-~~~~i~~~~-----~~~l~~L~~L~Ls~n-~l~~~~~~~~~-~  101 (455)
T 3v47_A           33 NYVDLSLNSI-AELNET--SFSRLQDLQFLKVEQQT-PGLVIRNNT-----FRGLSSLIILKLDYN-QFLQLETGAFN-G  101 (455)
T ss_dssp             CEEECCSSCC-CEECTT--TTSSCTTCCEEECCCCS-TTCEECTTT-----TTTCTTCCEEECTTC-TTCEECTTTTT-T
T ss_pred             CEEEecCCcc-CcCChh--HhccCccccEEECcCCc-ccceECccc-----ccccccCCEEeCCCC-ccCccChhhcc-C
Confidence            4599999873 322112  23588999999999953 32 111111     244699999999996 55543222222 4


Q ss_pred             CCCCCEEEecCCCCCCHHHHHH-HHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhC
Q 026356          103 CPELKVFSIYWNVRVTDIGIQH-LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNN  181 (240)
Q Consensus       103 ~~~L~~L~l~~~~~l~~~~~~~-l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~  181 (240)
                      +++|++|++++| .+++..... ....+++|++|+++++ .++......+...+++|+.|+++++ .++......+..-.
T Consensus       102 l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~  178 (455)
T 3v47_A          102 LANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFN-KVKSICEEDLLNFQ  178 (455)
T ss_dssp             CTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTC-CBSCCCTTTSGGGT
T ss_pred             cccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCC-cccccChhhhhccc
Confidence            899999999988 676544332 2357889999999999 6765433333356899999999996 55432111111100


Q ss_pred             hhhhhHHH---------------------hcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhh
Q 026356          182 ILLMSEFI---------------------YHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIET  232 (240)
Q Consensus       182 ~~~l~~l~---------------------~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  232 (240)
                      ...++.+.                     ...++.|+.++++.+.+... ....+......++|+.|++.++
T Consensus       179 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~~~~~~~L~~L~l~~~  249 (455)
T 3v47_A          179 GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES-MAKRFFDAIAGTKIQSLILSNS  249 (455)
T ss_dssp             TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHH-HHHHHHHHTTTCCEEEEECTTC
T ss_pred             cccccccccccCcccccchhhccccccccccccceeeeEecCCCccccc-chhhhhccccccceeeEeeccc
Confidence            00011100                     12346788899988887765 2333332223355666655554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.77  E-value=1.1e-10  Score=94.63  Aligned_cols=176  Identities=13%  Similarity=0.144  Sum_probs=88.9

Q ss_pred             EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCC
Q 026356           25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCP  104 (240)
Q Consensus        25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~  104 (240)
                      .|+++++....   +..-.+..+++|++|++++ +.+.....     .....+++|++|+++++ .++...... ...++
T Consensus        41 ~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~-n~l~~i~~-----~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~  109 (270)
T 2o6q_A           41 KLDLQSNKLSS---LPSKAFHRLTKLRLLYLND-NKLQTLPA-----GIFKELKNLETLWVTDN-KLQALPIGV-FDQLV  109 (270)
T ss_dssp             EEECCSSCCSC---CCTTSSSSCTTCCEEECCS-SCCSCCCT-----TTTSSCTTCCEEECCSS-CCCCCCTTT-TTTCS
T ss_pred             EEECcCCCCCe---eCHHHhcCCCCCCEEECCC-CccCeeCh-----hhhcCCCCCCEEECCCC-cCCcCCHhH-ccccc
Confidence            47777776321   1111234677788888877 34442111     11234577888888774 444322111 12467


Q ss_pred             CCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhh
Q 026356          105 ELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILL  184 (240)
Q Consensus       105 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~  184 (240)
                      +|++|+++++ .++..... ....+++|++|+++++ .++......+ ..+++|+.|+++++ .++....          
T Consensus       110 ~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~----------  174 (270)
T 2o6q_A          110 NLAELRLDRN-QLKSLPPR-VFDSLTKLTYLSLGYN-ELQSLPKGVF-DKLTSLKELRLYNN-QLKRVPE----------  174 (270)
T ss_dssp             SCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCSCCCT----------
T ss_pred             CCCEEECCCC-ccCeeCHH-HhCcCcCCCEEECCCC-cCCccCHhHc-cCCcccceeEecCC-cCcEeCh----------
Confidence            7788877765 33322111 1235677777777777 5553221111 34677777777774 4432100          


Q ss_pred             hhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356          185 MSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  233 (240)
Q Consensus       185 l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  233 (240)
                         -.+.+++.|+.++++.+.+.....  ..+  ..+++|+.|++.++|
T Consensus       175 ---~~~~~l~~L~~L~L~~N~l~~~~~--~~~--~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          175 ---GAFDKLTELKTLKLDNNQLKRVPE--GAF--DSLEKLKMLQLQENP  216 (270)
T ss_dssp             ---TTTTTCTTCCEEECCSSCCSCCCT--TTT--TTCTTCCEEECCSSC
T ss_pred             ---hHhccCCCcCEEECCCCcCCcCCH--HHh--ccccCCCEEEecCCC
Confidence               022345556666665555543310  111  345566666665544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.77  E-value=6.4e-10  Score=93.53  Aligned_cols=44  Identities=5%  Similarity=-0.070  Sum_probs=30.6

Q ss_pred             hcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhhhhc
Q 026356          190 YHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQ  237 (240)
Q Consensus       190 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~d  237 (240)
                      +.+++.|+.++++.+.+... . ..++  ..+++|++|++.+++-.+|
T Consensus       273 l~~l~~L~~L~Ls~N~l~~i-~-~~~~--~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          273 LNQISGLLELEFSRNQLKSV-P-DGIF--DRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             HHTCTTCCEEECCSSCCCCC-C-TTTT--TTCTTCCEEECCSSCBCCC
T ss_pred             HhcccCCCEEECCCCCCCcc-C-HHHH--hcCCCCCEEEeeCCCccCc
Confidence            46678888999988877643 1 1122  5678899999888776554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.76  E-value=5.4e-11  Score=99.40  Aligned_cols=44  Identities=7%  Similarity=0.076  Sum_probs=28.5

Q ss_pred             hcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhhhhc
Q 026356          190 YHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQ  237 (240)
Q Consensus       190 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~d  237 (240)
                      +.+++.|+.++++.+.......  ..+  ..+++|+.|++++|+..+.
T Consensus       249 ~~~l~~L~~L~L~~n~~~~~~p--~~~--~~l~~L~~L~L~~n~~~~~  292 (328)
T 4fcg_A          249 FGGRAPLKRLILKDCSNLLTLP--LDI--HRLTQLEKLDLRGCVNLSR  292 (328)
T ss_dssp             TTCCCCCCEEECTTCTTCCBCC--TTG--GGCTTCCEEECTTCTTCCC
T ss_pred             hcCCCCCCEEECCCCCchhhcc--hhh--hcCCCCCEEeCCCCCchhh
Confidence            3556778888887765554421  112  5678888888888876553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.74  E-value=2.8e-09  Score=96.05  Aligned_cols=164  Identities=18%  Similarity=0.205  Sum_probs=111.0

Q ss_pred             EeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCC
Q 026356           26 IDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPE  105 (240)
Q Consensus        26 L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~  105 (240)
                      |+++++....   +..  +..+++|+.|+|+++ .+.+...  +     ..+++|+.|+++++ .+++.  ..+ ..+++
T Consensus        48 L~l~~n~i~~---l~~--l~~l~~L~~L~Ls~N-~l~~~~~--l-----~~l~~L~~L~Ls~N-~l~~l--~~l-~~l~~  110 (605)
T 1m9s_A           48 IIANNSDIKS---VQG--IQYLPNVTKLFLNGN-KLTDIKP--L-----TNLKNLGWLFLDEN-KIKDL--SSL-KDLKK  110 (605)
T ss_dssp             CBCTTCCCCC---CTT--GGGCTTCCEEECTTS-CCCCCGG--G-----GGCTTCCEEECCSS-CCCCC--TTS-TTCTT
T ss_pred             EECcCCCCCC---ChH--HccCCCCCEEEeeCC-CCCCChh--h-----ccCCCCCEEECcCC-CCCCC--hhh-ccCCC
Confidence            7777776322   122  347889999999985 4544221  1     34589999999996 55542  222 24888


Q ss_pred             CCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhh
Q 026356          106 LKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLM  185 (240)
Q Consensus       106 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l  185 (240)
                      |++|++++| .+++.  .. ...+++|+.|++++| .+++.  ..+ ..+++|+.|+|++| .+++.             
T Consensus       111 L~~L~Ls~N-~l~~l--~~-l~~l~~L~~L~Ls~N-~l~~l--~~l-~~l~~L~~L~Ls~N-~l~~~-------------  168 (605)
T 1m9s_A          111 LKSLSLEHN-GISDI--NG-LVHLPQLESLYLGNN-KITDI--TVL-SRLTKLDTLSLEDN-QISDI-------------  168 (605)
T ss_dssp             CCEEECTTS-CCCCC--GG-GGGCTTCSEEECCSS-CCCCC--GGG-GSCTTCSEEECCSS-CCCCC-------------
T ss_pred             CCEEEecCC-CCCCC--cc-ccCCCccCEEECCCC-ccCCc--hhh-cccCCCCEEECcCC-cCCCc-------------
Confidence            999999987 45442  22 347789999999999 67654  222 35889999999986 55431             


Q ss_pred             hHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhhhh
Q 026356          186 SEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTG  236 (240)
Q Consensus       186 ~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~  236 (240)
                      .  .+..++.|+.|+++.+.+.+..    .+  ..+++|+.|++.+|+-.+
T Consensus       169 ~--~l~~l~~L~~L~Ls~N~i~~l~----~l--~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          169 V--PLAGLTKLQNLYLSKNHISDLR----AL--AGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             G--GGTTCTTCCEEECCSSCCCBCG----GG--TTCTTCSEEECCSEEEEC
T ss_pred             h--hhccCCCCCEEECcCCCCCCCh----HH--ccCCCCCEEEccCCcCcC
Confidence            0  1466788999999888887652    13  678899999998876543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.74  E-value=3.7e-09  Score=77.71  Aligned_cols=109  Identities=25%  Similarity=0.300  Sum_probs=62.3

Q ss_pred             cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHH
Q 026356           46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL  125 (240)
Q Consensus        46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l  125 (240)
                      ..++|+.|+++++ .+.+..+...    ...+++|+.|+++++ .+++.  .. ...+++|++|+++++ .++.. +...
T Consensus        15 ~~~~l~~L~l~~n-~l~~~~~~~~----~~~l~~L~~L~l~~n-~l~~~--~~-~~~l~~L~~L~Ls~n-~i~~~-~~~~   83 (149)
T 2je0_A           15 TPSDVKELVLDNS-RSNEGKLEGL----TDEFEELEFLSTINV-GLTSI--AN-LPKLNKLKKLELSDN-RVSGG-LEVL   83 (149)
T ss_dssp             CGGGCSEEECTTC-BCBTTBCCSC----CTTCTTCCEEECTTS-CCCCC--TT-CCCCTTCCEEECCSS-CCCSC-THHH
T ss_pred             CCccCeEEEccCC-cCChhHHHHH----HhhcCCCcEEECcCC-CCCCc--hh-hhcCCCCCEEECCCC-cccch-HHHH
Confidence            4467888888874 4552211111    234577788888775 55543  22 224667777777766 44432 3334


Q ss_pred             HHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCC
Q 026356          126 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY  166 (240)
Q Consensus       126 ~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c  166 (240)
                      ...+++|+.|++++| .+++.........+++|+.|++++|
T Consensus        84 ~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N  123 (149)
T 2je0_A           84 AEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC  123 (149)
T ss_dssp             HHHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred             hhhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC
Confidence            445677777777777 5665432222234677777777774

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.73  E-value=1.9e-09  Score=80.95  Aligned_cols=130  Identities=15%  Similarity=0.241  Sum_probs=91.1

Q ss_pred             CeEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhc
Q 026356           23 PKVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST  102 (240)
Q Consensus        23 ~~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~  102 (240)
                      .+.|++++|.. .+..+... +..+++|+.|+++++ .+.+.      . ....+++|+.|+++++ .++.. +..+...
T Consensus        26 L~~L~l~~n~l-~~~~i~~~-~~~l~~L~~L~l~~n-~l~~~------~-~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~   93 (168)
T 2ell_A           26 VRELVLDNCKS-NDGKIEGL-TAEFVNLEFLSLINV-GLISV------S-NLPKLPKLKKLELSEN-RIFGG-LDMLAEK   93 (168)
T ss_dssp             CSEEECCSCBC-BTTBCSSC-CGGGGGCCEEEEESS-CCCCC------S-SCCCCSSCCEEEEESC-CCCSC-CCHHHHH
T ss_pred             CCEEECCCCCC-ChhhHHHH-HHhCCCCCEEeCcCC-CCCCh------h-hhccCCCCCEEECcCC-cCchH-HHHHHhh
Confidence            45699999973 31222222 347899999999995 46654      1 2466799999999996 66543 2333445


Q ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHH--HHHHHhCCCCcEEeccCC
Q 026356          103 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSL--QLIADNYQELESLNLTRY  166 (240)
Q Consensus       103 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l--~~l~~~~~~L~~L~l~~c  166 (240)
                      +++|+.|+++++ .+++.........+++|+.|++++| .++....  ......+++|+.|++++|
T Consensus        94 l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A           94 LPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             CTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             CCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC
Confidence            999999999988 6665322123357899999999999 6765432  224456999999999987

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.70  E-value=3.8e-09  Score=85.65  Aligned_cols=170  Identities=11%  Similarity=0.097  Sum_probs=110.0

Q ss_pred             eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356           24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC  103 (240)
Q Consensus        24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~  103 (240)
                      +.|++++|.....   .  .+..+++|++|+++++ .++......     ...+++|+.|+++++ .++...-..+ ..+
T Consensus        66 ~~L~l~~n~l~~~---~--~l~~l~~L~~L~L~~n-~l~~~~~~~-----~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l  132 (272)
T 3rfs_A           66 RYLALGGNKLHDI---S--ALKELTNLTYLILTGN-QLQSLPNGV-----FDKLTNLKELVLVEN-QLQSLPDGVF-DKL  132 (272)
T ss_dssp             CEEECTTSCCCCC---G--GGTTCTTCCEEECTTS-CCCCCCTTT-----TTTCTTCCEEECTTS-CCCCCCTTTT-TTC
T ss_pred             cEEECCCCCCCCc---h--hhcCCCCCCEEECCCC-ccCccChhH-----hcCCcCCCEEECCCC-cCCccCHHHh-ccC
Confidence            3499999984432   2  2358899999999995 565322111     245689999999996 5653221112 358


Q ss_pred             CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChh
Q 026356          104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNIL  183 (240)
Q Consensus       104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~  183 (240)
                      ++|++|++++| .++.... .....+++|+.|++++| .+++.... ....+++|+.|++++| .++...        +.
T Consensus       133 ~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~--------~~  199 (272)
T 3rfs_A          133 TNLTYLNLAHN-QLQSLPK-GVFDKLTNLTELDLSYN-QLQSLPEG-VFDKLTQLKDLRLYQN-QLKSVP--------DG  199 (272)
T ss_dssp             TTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCSCCC--------TT
T ss_pred             CCCCEEECCCC-ccCccCH-HHhccCccCCEEECCCC-CcCccCHH-HhcCCccCCEEECCCC-cCCccC--------HH
Confidence            89999999988 5552221 12346789999999999 67743222 2235889999999996 555310        10


Q ss_pred             hhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhhh
Q 026356          184 LMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKT  235 (240)
Q Consensus       184 ~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~  235 (240)
                           .+..++.|+.++++.+.+.           ..||+|+.+.+..+...
T Consensus       200 -----~~~~l~~L~~L~l~~N~~~-----------~~~~~l~~l~~~~n~~~  235 (272)
T 3rfs_A          200 -----VFDRLTSLQYIWLHDNPWD-----------CTCPGIRYLSEWINKHS  235 (272)
T ss_dssp             -----TTTTCTTCCEEECCSSCBC-----------CCTTTTHHHHHHHHHTG
T ss_pred             -----HHhCCcCCCEEEccCCCcc-----------ccCcHHHHHHHHHHhCC
Confidence                 2466788999999877553           23556666666554433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.70  E-value=1.1e-08  Score=89.17  Aligned_cols=40  Identities=5%  Similarity=-0.028  Sum_probs=28.8

Q ss_pred             hcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhhh
Q 026356          190 YHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKT  235 (240)
Q Consensus       190 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~  235 (240)
                      +.+++.|+.++++.+.+.+...    +  ..+++|+.|++.+|+-.
T Consensus       349 l~~l~~L~~L~l~~n~l~~~~~----~--~~l~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          349 LANLTNINWLSAGHNQISDLTP----L--ANLTRITQLGLNDQAWT  388 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCBCGG----G--TTCTTCCEEECCCEEEE
T ss_pred             hccCCCCCEEeCCCCccCccch----h--hcCCCCCEEeccCCccc
Confidence            3566778888888888776632    3  67888888888877543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.67  E-value=9.5e-10  Score=91.23  Aligned_cols=133  Identities=11%  Similarity=0.075  Sum_probs=78.3

Q ss_pred             CCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCC
Q 026356           78 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE  157 (240)
Q Consensus        78 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~  157 (240)
                      ++|+.|+++++ .++......+...+++|++|+++++ .++...  .. ..+++|++|++++| .++.....  ...+++
T Consensus       144 ~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~--~~-~~l~~L~~L~Ls~N-~l~~l~~~--~~~l~~  215 (317)
T 3o53_A          144 SRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN-FIYDVK--GQ-VVFAKLKTLDLSSN-KLAFMGPE--FQSAAG  215 (317)
T ss_dssp             SSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS-CCCEEE--CC-CCCTTCCEEECCSS-CCCEECGG--GGGGTT
T ss_pred             CCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCC-cCcccc--cc-cccccCCEEECCCC-cCCcchhh--hcccCc
Confidence            56666666664 5544333334444666777777665 333220  00 13566777777776 55532111  234567


Q ss_pred             CcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhhhh
Q 026356          158 LESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTG  236 (240)
Q Consensus       158 L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~  236 (240)
                      |+.|+++++ .++.     +    +.     .+..++.|+.++++.+.+... .....+  ..++.|+.|++..+..+.
T Consensus       216 L~~L~L~~N-~l~~-----l----~~-----~~~~l~~L~~L~l~~N~~~~~-~~~~~~--~~~~~L~~l~l~~~~~l~  276 (317)
T 3o53_A          216 VTWISLRNN-KLVL-----I----EK-----ALRFSQNLEHFDLRGNGFHCG-TLRDFF--SKNQRVQTVAKQTVKKLT  276 (317)
T ss_dssp             CSEEECTTS-CCCE-----E----CT-----TCCCCTTCCEEECTTCCCBHH-HHHHHH--HTCHHHHHHHHHHHHHHH
T ss_pred             ccEEECcCC-cccc-----h----hh-----HhhcCCCCCEEEccCCCccCc-CHHHHH--hccccceEEECCCchhcc
Confidence            777777774 4442     0    11     235677899999998888744 345555  678899999998776554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.66  E-value=6.7e-11  Score=97.50  Aligned_cols=43  Identities=5%  Similarity=-0.034  Sum_probs=23.2

Q ss_pred             hcCCccceeecccCCCCCchhHHHHHHHhhcc-cccchhhhhhhhhhh
Q 026356          190 YHGIRFFQAVQINSSNGGDHLAFAYIIETNTY-KHGKEKHIIETIKTG  236 (240)
Q Consensus       190 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~~~  236 (240)
                      +.+++.|+.++++.+.+..... . .+  ..+ ++|+.|++++++-.+
T Consensus       219 ~~~l~~L~~L~L~~N~l~~~~~-~-~~--~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          219 YKCLNSLQVLDYSLNHIMTSKK-Q-EL--QHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             GTTCTTCCEEECTTSCCCBCSS-S-SC--CCCCTTCCEEECTTCCEEC
T ss_pred             ccCcccCCEeECCCCCCcccCH-H-HH--HhhhccCCEEEccCCCeec
Confidence            3455667777776666654311 0 11  233 367777777665443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.66  E-value=1.6e-10  Score=93.90  Aligned_cols=194  Identities=14%  Similarity=0.074  Sum_probs=112.4

Q ss_pred             eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356           24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC  103 (240)
Q Consensus        24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~  103 (240)
                      +.|++++|.. ......  .+..+++|++|+++++ .+.......     ...+++|++|+++++ .++......+ ..+
T Consensus        31 ~~L~ls~n~l-~~~~~~--~~~~l~~L~~L~l~~n-~l~~~~~~~-----~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l   99 (276)
T 2z62_A           31 KNLDLSFNPL-RHLGSY--SFFSFPELQVLDLSRC-EIQTIEDGA-----YQSLSHLSTLILTGN-PIQSLALGAF-SGL   99 (276)
T ss_dssp             CEEECTTCCC-CEECTT--TTTTCTTCSEEECTTC-CCCEECTTT-----TTTCTTCCEEECTTC-CCCEECTTTT-TTC
T ss_pred             cEEECCCCcc-cccCHh--HhccccCCcEEECCCC-cCCccCHHH-----ccCCcCCCEEECCCC-ccCccChhhh-cCC
Confidence            3499998873 221111  2347889999999985 555422211     245689999999995 5554322222 247


Q ss_pred             CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHH---HHHHHHHh
Q 026356          104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILL---GLFYIWSN  180 (240)
Q Consensus       104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~---~~~~l~~~  180 (240)
                      ++|++|+++++ .++...... ...+++|++|+++++ .+++..+......+++|+.|++++| .+++.   .+..+..-
T Consensus       100 ~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L  175 (276)
T 2z62_A          100 SSLQKLVAVET-NLASLENFP-IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQM  175 (276)
T ss_dssp             TTCCEEECTTS-CCCCSTTCC-CTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTC
T ss_pred             ccccEEECCCC-CccccCchh-cccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhhhc
Confidence            89999999877 343211111 246789999999998 6654322222245789999999985 55542   22222210


Q ss_pred             Ch---h------hhhHH--HhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhhhh
Q 026356          181 NI---L------LMSEF--IYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTG  236 (240)
Q Consensus       181 ~~---~------~l~~l--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~  236 (240)
                      ..   .      .+..+  .......|+.++++.+.+....  ...+  ..+++|+.|++.+++-.+
T Consensus       176 ~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~--~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          176 PLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVP--DGIF--DRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             TTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCC--TTTT--TTCCSCCEEECCSSCBCC
T ss_pred             cccceeeecCCCcccccCccccCCCcccEEECCCCceeecC--HhHh--cccccccEEEccCCcccc
Confidence            00   0      00000  0112236888888887776542  1223  567889999988655443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.66  E-value=2.1e-10  Score=100.20  Aligned_cols=132  Identities=15%  Similarity=0.214  Sum_probs=77.1

Q ss_pred             eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356           24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC  103 (240)
Q Consensus        24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~  103 (240)
                      +.|+|++|.. ......  .+..+++|++|+++++ .+.......     ...+++|++|+++++ .++......+ ..+
T Consensus        35 ~~L~L~~n~l-~~~~~~--~~~~l~~L~~L~L~~n-~i~~~~~~~-----~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l  103 (477)
T 2id5_A           35 RLLDLGKNRI-KTLNQD--EFASFPHLEELELNEN-IVSAVEPGA-----FNNLFNLRTLGLRSN-RLKLIPLGVF-TGL  103 (477)
T ss_dssp             SEEECCSSCC-CEECTT--TTTTCTTCCEEECTTS-CCCEECTTT-----TTTCTTCCEEECCSS-CCCSCCTTSS-TTC
T ss_pred             cEEECCCCcc-ceECHh--HccCCCCCCEEECCCC-ccCEeChhh-----hhCCccCCEEECCCC-cCCccCcccc-cCC
Confidence            3488888873 221111  2347888999999884 555432221     244588889998885 5543221111 247


Q ss_pred             CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCH
Q 026356          104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMIL  171 (240)
Q Consensus       104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~  171 (240)
                      ++|++|+++++ .++...-. ....+++|++|+++++ .++......+ ..+++|+.|++++| .++.
T Consensus       104 ~~L~~L~Ls~n-~i~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~  166 (477)
T 2id5_A          104 SNLTKLDISEN-KIVILLDY-MFQDLYNLKSLEVGDN-DLVYISHRAF-SGLNSLEQLTLEKC-NLTS  166 (477)
T ss_dssp             TTCCEEECTTS-CCCEECTT-TTTTCTTCCEEEECCT-TCCEECTTSS-TTCTTCCEEEEESC-CCSS
T ss_pred             CCCCEEECCCC-ccccCChh-HccccccCCEEECCCC-ccceeChhhc-cCCCCCCEEECCCC-cCcc
Confidence            88888888876 34322111 1246678888888887 5553222222 24678888888875 4443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.65  E-value=2e-08  Score=87.52  Aligned_cols=176  Identities=14%  Similarity=0.172  Sum_probs=88.6

Q ss_pred             CeEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhc
Q 026356           23 PKVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST  102 (240)
Q Consensus        23 ~~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~  102 (240)
                      .+.|++++|.....   ..  ...+++|++|+++++ .+.+...       ...+++|+.|+++++ .+++.  ..+ ..
T Consensus       179 L~~L~l~~n~l~~~---~~--l~~l~~L~~L~l~~n-~l~~~~~-------~~~l~~L~~L~l~~n-~l~~~--~~l-~~  241 (466)
T 1o6v_A          179 LERLDISSNKVSDI---SV--LAKLTNLESLIATNN-QISDITP-------LGILTNLDELSLNGN-QLKDI--GTL-AS  241 (466)
T ss_dssp             CCEEECCSSCCCCC---GG--GGGCTTCSEEECCSS-CCCCCGG-------GGGCTTCCEEECCSS-CCCCC--GGG-GG
T ss_pred             CCEEECcCCcCCCC---hh--hccCCCCCEEEecCC-ccccccc-------ccccCCCCEEECCCC-Ccccc--hhh-hc
Confidence            34488887774332   11  346777888888774 3433211       122467777777775 44432  122 24


Q ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhCh
Q 026356          103 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNI  182 (240)
Q Consensus       103 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~  182 (240)
                      +++|++|++++| .++....   ...+++|+.|++++| .+++...   ...+++|+.|++++| .+++...  + ...+
T Consensus       242 l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n-~l~~~~~--~-~~l~  309 (466)
T 1o6v_A          242 LTNLTDLDLANN-QISNLAP---LSGLTKLTELKLGAN-QISNISP---LAGLTALTNLELNEN-QLEDISP--I-SNLK  309 (466)
T ss_dssp             CTTCSEEECCSS-CCCCCGG---GTTCTTCSEEECCSS-CCCCCGG---GTTCTTCSEEECCSS-CCSCCGG--G-GGCT
T ss_pred             CCCCCEEECCCC-ccccchh---hhcCCCCCEEECCCC-ccCcccc---ccCCCccCeEEcCCC-cccCchh--h-cCCC
Confidence            666777777665 3332111   235566666666666 4443211   123555666666654 3332100  0 0000


Q ss_pred             hhhhHH-----------HhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhh
Q 026356          183 LLMSEF-----------IYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK  234 (240)
Q Consensus       183 ~~l~~l-----------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  234 (240)
                      . ++.+           .+..++.|+.++++.+.+.+..    .+  ..+++|+.|++++|..
T Consensus       310 ~-L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~----~l--~~l~~L~~L~l~~n~l  365 (466)
T 1o6v_A          310 N-LTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS----SL--ANLTNINWLSAGHNQI  365 (466)
T ss_dssp             T-CSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCG----GG--TTCTTCCEEECCSSCC
T ss_pred             C-CCEEECcCCcCCCchhhccCccCCEeECCCCccCCch----hh--ccCCCCCEEeCCCCcc
Confidence            0 1110           1345566777777766666541    12  5677777777776653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.64  E-value=5.3e-10  Score=94.02  Aligned_cols=160  Identities=13%  Similarity=0.096  Sum_probs=74.7

Q ss_pred             cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHH
Q 026356           46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL  125 (240)
Q Consensus        46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l  125 (240)
                      .+++|+.|+++++ .+++.....     ...+++|++|+++++ .++......+ ..+++|++|+++++ .++.......
T Consensus        74 ~l~~L~~L~L~~n-~l~~~~~~~-----~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~l~~~~~  144 (353)
T 2z80_A           74 RCVNLQALVLTSN-GINTIEEDS-----FSSLGSLEHLDLSYN-YLSNLSSSWF-KPLSSLTFLNLLGN-PYKTLGETSL  144 (353)
T ss_dssp             TCTTCCEEECTTS-CCCEECTTT-----TTTCTTCCEEECCSS-CCSSCCHHHH-TTCTTCSEEECTTC-CCSSSCSSCS
T ss_pred             cCCCCCEEECCCC-ccCccCHhh-----cCCCCCCCEEECCCC-cCCcCCHhHh-CCCccCCEEECCCC-CCcccCchhh
Confidence            5566666666653 344321111     123456666666663 4433221112 23566666666655 3331110011


Q ss_pred             HHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCC
Q 026356          126 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSN  205 (240)
Q Consensus       126 ~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~  205 (240)
                      ...+++|+.|++++|..++......+ ..+++|+.|+++++ .++..        .+.     .+.+++.|+.++++.+.
T Consensus       145 ~~~l~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n-~l~~~--------~~~-----~l~~l~~L~~L~l~~n~  209 (353)
T 2z80_A          145 FSHLTKLQILRVGNMDTFTKIQRKDF-AGLTFLEELEIDAS-DLQSY--------EPK-----SLKSIQNVSHLILHMKQ  209 (353)
T ss_dssp             CTTCTTCCEEEEEESSSCCEECTTTT-TTCCEEEEEEEEET-TCCEE--------CTT-----TTTTCSEEEEEEEECSC
T ss_pred             hccCCCCcEEECCCCccccccCHHHc-cCCCCCCEEECCCC-CcCcc--------CHH-----HHhccccCCeecCCCCc
Confidence            23455666666666533332111111 23555666666653 33221        000     23456667777777766


Q ss_pred             CCchhHHHHHHHhhcccccchhhhhhhh
Q 026356          206 GGDHLAFAYIIETNTYKHGKEKHIIETI  233 (240)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~  233 (240)
                      +... . ..++  ..+++|+.|+++++.
T Consensus       210 l~~~-~-~~~~--~~~~~L~~L~L~~n~  233 (353)
T 2z80_A          210 HILL-L-EIFV--DVTSSVECLELRDTD  233 (353)
T ss_dssp             STTH-H-HHHH--HHTTTEEEEEEESCB
T ss_pred             cccc-h-hhhh--hhcccccEEECCCCc
Confidence            6433 1 2222  446777777776654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.63  E-value=8.2e-10  Score=95.67  Aligned_cols=39  Identities=8%  Similarity=0.065  Sum_probs=20.7

Q ss_pred             cCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356          191 HGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  233 (240)
Q Consensus       191 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  233 (240)
                      .+++.|+.++++.+.+....  ...+  ..+++|+.|++.++|
T Consensus       252 ~~l~~L~~L~L~~N~l~~~~--~~~~--~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          252 DNLQSLVEINLAHNNLTLLP--HDLF--TPLHHLERIHLHHNP  290 (440)
T ss_dssp             TTCTTCCEEECTTSCCCCCC--TTTT--SSCTTCCEEECCSSC
T ss_pred             cCCCCCCEEECCCCCCCccC--hhHh--ccccCCCEEEcCCCC
Confidence            34555666666665555431  1112  345667777766655

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.62  E-value=4.2e-10  Score=101.07  Aligned_cols=42  Identities=5%  Similarity=0.011  Sum_probs=25.3

Q ss_pred             cCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhhhhc
Q 026356          191 HGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQ  237 (240)
Q Consensus       191 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~d  237 (240)
                      .+++.| .++++.+.+....  ...+  ..+++|+.|++.++|-..|
T Consensus       521 ~~l~~L-~L~L~~N~l~~~~--~~~~--~~l~~L~~L~l~~N~~~c~  562 (606)
T 3t6q_A          521 SHLKGI-YLNLASNHISIIL--PSLL--PILSQQRTINLRQNPLDCT  562 (606)
T ss_dssp             TTCCSC-EEECCSSCCCCCC--GGGH--HHHHTSSEEECTTCCEECS
T ss_pred             Cccccc-EEECcCCcccccC--Hhhc--ccCCCCCEEeCCCCCcccc
Confidence            455666 7777777666431  1112  3567888888887765443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.61  E-value=8.8e-11  Score=96.77  Aligned_cols=189  Identities=9%  Similarity=0.017  Sum_probs=86.8

Q ss_pred             EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHH--HHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhc
Q 026356           25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRH--LELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST  102 (240)
Q Consensus        25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~--~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~  102 (240)
                      .|+++++....   +..-.+..+++|++|++++ +.++..+  ...+.     .+++|++|+++++ .++.-.  .-...
T Consensus        32 ~L~L~~n~l~~---i~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~-----~~~~L~~L~Ls~n-~i~~l~--~~~~~   99 (306)
T 2z66_A           32 RLELESNKLQS---LPHGVFDKLTQLTKLSLSS-NGLSFKGCCSQSDF-----GTTSLKYLDLSFN-GVITMS--SNFLG   99 (306)
T ss_dssp             EEECCSSCCCC---CCTTTTTTCTTCSEEECCS-SCCCEEEEEEHHHH-----SCSCCCEEECCSC-SEEEEE--EEEET
T ss_pred             EEECCCCccCc---cCHhHhhccccCCEEECCC-CccCcccCcccccc-----cccccCEEECCCC-ccccCh--hhcCC
Confidence            47888776321   1111124677888888887 4454321  01111     1366777777764 333100  00113


Q ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhCh
Q 026356          103 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNI  182 (240)
Q Consensus       103 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~  182 (240)
                      +++|++|+++++ .++..........+++|+.|++++| .++......+ ..+++|+.|+++++ .+++..+.......+
T Consensus       100 l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~  175 (306)
T 2z66_A          100 LEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIF-NGLSSLEVLKMAGN-SFQENFLPDIFTELR  175 (306)
T ss_dssp             CTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTS-CCEECSTTTT-TTCTTCCEEECTTC-EEGGGEECSCCTTCT
T ss_pred             CCCCCEEECCCC-cccccccchhhhhccCCCEEECCCC-cCCccchhhc-ccCcCCCEEECCCC-ccccccchhHHhhCc
Confidence            556666666554 2222111111234455555555555 3332111111 22445555555543 222200000000000


Q ss_pred             hhhhH-------------HHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhh
Q 026356          183 LLMSE-------------FIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK  234 (240)
Q Consensus       183 ~~l~~-------------l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  234 (240)
                       .++.             -.+.+++.|+.++++.+.+.+....  .+  ..+++|+.|+++++.-
T Consensus       176 -~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~--~~l~~L~~L~L~~N~l  235 (306)
T 2z66_A          176 -NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF--PY--KCLNSLQVLDYSLNHI  235 (306)
T ss_dssp             -TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG--GG--TTCTTCCEEECTTSCC
T ss_pred             -CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh--hc--cCcccCCEeECCCCCC
Confidence             0000             1335567788888887777654211  12  5678899998888754

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.61  E-value=6.5e-10  Score=96.31  Aligned_cols=176  Identities=14%  Similarity=0.117  Sum_probs=96.0

Q ss_pred             CeEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhc
Q 026356           23 PKVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST  102 (240)
Q Consensus        23 ~~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~  102 (240)
                      .+.|+|++|.. ......  .+..+++|++|++++ +.++.....     ....+++|+.|+++++ .++...-..+ ..
T Consensus        90 L~~L~Ls~n~i-~~i~~~--~~~~l~~L~~L~L~~-n~l~~~~~~-----~~~~l~~L~~L~L~~N-~i~~~~~~~~-~~  158 (440)
T 3zyj_A           90 LEILQLSRNHI-RTIEIG--AFNGLANLNTLELFD-NRLTTIPNG-----AFVYLSKLKELWLRNN-PIESIPSYAF-NR  158 (440)
T ss_dssp             CCEEECCSSCC-CEECGG--GGTTCSSCCEEECCS-SCCSSCCTT-----TSCSCSSCCEEECCSC-CCCEECTTTT-TT
T ss_pred             CCEEECCCCcC-CccChh--hccCCccCCEEECCC-CcCCeeCHh-----HhhccccCceeeCCCC-cccccCHHHh-hh
Confidence            34488888863 221111  234778888888888 455532211     1245578888888884 5543211111 24


Q ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhCh
Q 026356          103 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNI  182 (240)
Q Consensus       103 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~  182 (240)
                      +++|++|+++++..++..... ....+++|++|++++| .+++..  .+ ..+++|+.|+++++ .+++..        +
T Consensus       159 l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n-~l~~~~--~~-~~l~~L~~L~Ls~N-~l~~~~--------~  224 (440)
T 3zyj_A          159 IPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMC-NLREIP--NL-TPLIKLDELDLSGN-HLSAIR--------P  224 (440)
T ss_dssp             CTTCCEEECCCCTTCCEECTT-TTTTCSSCCEEECTTS-CCSSCC--CC-TTCSSCCEEECTTS-CCCEEC--------T
T ss_pred             CcccCEeCCCCCCCcceeCcc-hhhcccccCeecCCCC-cCcccc--cc-CCCcccCEEECCCC-ccCccC--------h
Confidence            777888888775444321111 1235677777777777 555321  11 24667777777774 444310        0


Q ss_pred             hhhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhh
Q 026356          183 LLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIET  232 (240)
Q Consensus       183 ~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  232 (240)
                           -.+.+++.|+.++++.+.+.....  ..+  ..+++|+.|+++++
T Consensus       225 -----~~~~~l~~L~~L~L~~n~l~~~~~--~~~--~~l~~L~~L~L~~N  265 (440)
T 3zyj_A          225 -----GSFQGLMHLQKLWMIQSQIQVIER--NAF--DNLQSLVEINLAHN  265 (440)
T ss_dssp             -----TTTTTCTTCCEEECTTCCCCEECT--TSS--TTCTTCCEEECTTS
T ss_pred             -----hhhccCccCCEEECCCCceeEECh--hhh--cCCCCCCEEECCCC
Confidence                 033556666677776666654411  112  35666777776665

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.60  E-value=7.7e-10  Score=96.17  Aligned_cols=189  Identities=13%  Similarity=0.058  Sum_probs=95.0

Q ss_pred             CeEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhc
Q 026356           23 PKVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST  102 (240)
Q Consensus        23 ~~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~  102 (240)
                      .+.|+|++|.. ......  .+..+++|++|++++ +.++.....     ....+++|++|+++++ .++...-.. ...
T Consensus       101 L~~L~Ls~n~i-~~~~~~--~~~~l~~L~~L~L~~-n~l~~~~~~-----~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~  169 (452)
T 3zyi_A          101 LEVLQLGRNSI-RQIEVG--AFNGLASLNTLELFD-NWLTVIPSG-----AFEYLSKLRELWLRNN-PIESIPSYA-FNR  169 (452)
T ss_dssp             CCEEECCSSCC-CEECTT--TTTTCTTCCEEECCS-SCCSBCCTT-----TSSSCTTCCEEECCSC-CCCEECTTT-TTT
T ss_pred             CCEEECCCCcc-CCcChh--hccCcccCCEEECCC-CcCCccChh-----hhcccCCCCEEECCCC-CcceeCHhH-Hhc
Confidence            33488888763 221111  234678888888888 445432211     1234578888888874 454211111 124


Q ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhCh
Q 026356          103 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNI  182 (240)
Q Consensus       103 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~  182 (240)
                      +++|++|+++++..++..... ....+++|+.|++++| .+++..  .+ ..+++|+.|+++++ .+++..-..+. +.+
T Consensus       170 l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n-~l~~~~--~~-~~l~~L~~L~Ls~N-~l~~~~~~~~~-~l~  242 (452)
T 3zyi_A          170 VPSLMRLDLGELKKLEYISEG-AFEGLFNLKYLNLGMC-NIKDMP--NL-TPLVGLEELEMSGN-HFPEIRPGSFH-GLS  242 (452)
T ss_dssp             CTTCCEEECCCCTTCCEECTT-TTTTCTTCCEEECTTS-CCSSCC--CC-TTCTTCCEEECTTS-CCSEECGGGGT-TCT
T ss_pred             CCcccEEeCCCCCCccccChh-hccCCCCCCEEECCCC-cccccc--cc-cccccccEEECcCC-cCcccCccccc-Ccc
Confidence            667777777765444321111 1234566666766666 454321  11 23556666666663 34321110000 000


Q ss_pred             hhhhH-------------HHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhh
Q 026356          183 LLMSE-------------FIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK  234 (240)
Q Consensus       183 ~~l~~-------------l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  234 (240)
                       .++.             -.+.+++.|+.++++.+.+....  ...+  ..+++|+.|++.++|-
T Consensus       243 -~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~--~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          243 -SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP--HDLF--TPLRYLVELHLHHNPW  302 (452)
T ss_dssp             -TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC--TTSS--TTCTTCCEEECCSSCE
T ss_pred             -CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC--hHHh--ccccCCCEEEccCCCc
Confidence             0111             12355677778888777665431  1112  4567788888776653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.60  E-value=1.2e-09  Score=94.87  Aligned_cols=186  Identities=15%  Similarity=0.123  Sum_probs=110.7

Q ss_pred             eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356           24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC  103 (240)
Q Consensus        24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~  103 (240)
                      +.|+|++|.. ......  .+..+++|+.|++++ +.+.......     ...+++|+.|+++++ .++...-..+ ..+
T Consensus        78 ~~L~L~~n~i-~~~~~~--~~~~l~~L~~L~Ls~-n~i~~~~~~~-----~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l  146 (452)
T 3zyi_A           78 RYLNLMENNI-QMIQAD--TFRHLHHLEVLQLGR-NSIRQIEVGA-----FNGLASLNTLELFDN-WLTVIPSGAF-EYL  146 (452)
T ss_dssp             SEEECCSSCC-CEECTT--TTTTCTTCCEEECCS-SCCCEECTTT-----TTTCTTCCEEECCSS-CCSBCCTTTS-SSC
T ss_pred             cEEECcCCcC-ceECHH--HcCCCCCCCEEECCC-CccCCcChhh-----ccCcccCCEEECCCC-cCCccChhhh-ccc
Confidence            3499999873 321111  235889999999999 4565432222     245699999999995 5653221111 258


Q ss_pred             CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChh
Q 026356          104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNIL  183 (240)
Q Consensus       104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~  183 (240)
                      ++|++|+++++ .++.... .....+++|+.|++++|..++......+ ..+++|+.|++++| .+++..  .+. . ..
T Consensus       147 ~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~~~-~~l~~L~~L~L~~n-~l~~~~--~~~-~-l~  218 (452)
T 3zyi_A          147 SKLRELWLRNN-PIESIPS-YAFNRVPSLMRLDLGELKKLEYISEGAF-EGLFNLKYLNLGMC-NIKDMP--NLT-P-LV  218 (452)
T ss_dssp             TTCCEEECCSC-CCCEECT-TTTTTCTTCCEEECCCCTTCCEECTTTT-TTCTTCCEEECTTS-CCSSCC--CCT-T-CT
T ss_pred             CCCCEEECCCC-CcceeCH-hHHhcCCcccEEeCCCCCCccccChhhc-cCCCCCCEEECCCC-cccccc--ccc-c-cc
Confidence            89999999987 4542211 1234788999999999866654322222 35889999999996 555421  000 0 00


Q ss_pred             hhhH-------------HHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhh
Q 026356          184 LMSE-------------FIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIET  232 (240)
Q Consensus       184 ~l~~-------------l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  232 (240)
                      .++.             -.+.+++.|+.++++.+.+.....  ..+  ..+++|+.|+++++
T Consensus       219 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~--~~l~~L~~L~L~~N  276 (452)
T 3zyi_A          219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER--NAF--DGLASLVELNLAHN  276 (452)
T ss_dssp             TCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT--TTT--TTCTTCCEEECCSS
T ss_pred             cccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH--HHh--cCCCCCCEEECCCC
Confidence            0111             133455566666666665554311  112  45677777777665

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.58  E-value=1e-09  Score=95.90  Aligned_cols=128  Identities=17%  Similarity=0.169  Sum_probs=66.4

Q ss_pred             CeEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhc
Q 026356           23 PKVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST  102 (240)
Q Consensus        23 ~~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~  102 (240)
                      .+.|+|++|.. ......  .+..+++|++|++++ +.+......     ....+++|+.|+++++ .++...-..+ ..
T Consensus        58 L~~L~L~~n~i-~~~~~~--~~~~l~~L~~L~L~~-n~l~~~~~~-----~~~~l~~L~~L~Ls~n-~i~~~~~~~~-~~  126 (477)
T 2id5_A           58 LEELELNENIV-SAVEPG--AFNNLFNLRTLGLRS-NRLKLIPLG-----VFTGLSNLTKLDISEN-KIVILLDYMF-QD  126 (477)
T ss_dssp             CCEEECTTSCC-CEECTT--TTTTCTTCCEEECCS-SCCCSCCTT-----SSTTCTTCCEEECTTS-CCCEECTTTT-TT
T ss_pred             CCEEECCCCcc-CEeChh--hhhCCccCCEEECCC-CcCCccCcc-----cccCCCCCCEEECCCC-ccccCChhHc-cc
Confidence            34488888763 221111  234778888888887 345432211     1234578888888874 4433211111 24


Q ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccC
Q 026356          103 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR  165 (240)
Q Consensus       103 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~  165 (240)
                      +++|++|+++++ .++......+ ..+++|++|++++| .++......+ ..+++|+.|++++
T Consensus       127 l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~l-~~l~~L~~L~l~~  185 (477)
T 2id5_A          127 LYNLKSLEVGDN-DLVYISHRAF-SGLNSLEQLTLEKC-NLTSIPTEAL-SHLHGLIVLRLRH  185 (477)
T ss_dssp             CTTCCEEEECCT-TCCEECTTSS-TTCTTCCEEEEESC-CCSSCCHHHH-TTCTTCCEEEEES
T ss_pred             cccCCEEECCCC-ccceeChhhc-cCCCCCCEEECCCC-cCcccChhHh-cccCCCcEEeCCC
Confidence            667777777765 3332111111 24566777777766 4554322222 2355566666555

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.57  E-value=2.4e-08  Score=88.53  Aligned_cols=182  Identities=13%  Similarity=0.053  Sum_probs=94.3

Q ss_pred             EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHH-HHHHhcC
Q 026356           25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGI-EIISSTC  103 (240)
Q Consensus        25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~l~~~~  103 (240)
                      .|++++|.. ..  +.......+++|+.|++++ +.+.+.......  +...+++|+.|+++++ .++.... ......+
T Consensus       314 ~L~l~~n~l-~~--ip~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~--~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l  386 (549)
T 2z81_A          314 RITVENSKV-FL--VPCSFSQHLKSLEFLDLSE-NLMVEEYLKNSA--CKGAWPSLQTLVLSQN-HLRSMQKTGEILLTL  386 (549)
T ss_dssp             EEEEESSCC-CC--CCHHHHHHCTTCCEEECCS-SCCCHHHHHHHT--CTTSSTTCCEEECTTS-CCCCHHHHHHHGGGC
T ss_pred             EEEeccCcc-cc--CCHHHHhcCccccEEEccC-Cccccccccchh--hhhccccCcEEEccCC-cccccccchhhhhcC
Confidence            477777763 21  1111112577888888887 456664433211  1245578888888885 6654321 1223457


Q ss_pred             CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHH----------------HHHhCCCCcEEeccCCC
Q 026356          104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQL----------------IADNYQELESLNLTRYV  167 (240)
Q Consensus       104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~----------------l~~~~~~L~~L~l~~c~  167 (240)
                      ++|++|++++| .++.  +......+++|+.|++++| .++...-..                +...+++|+.|+++++ 
T Consensus       387 ~~L~~L~Ls~N-~l~~--lp~~~~~~~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-  461 (549)
T 2z81_A          387 KNLTSLDISRN-TFHP--MPDSCQWPEKMRFLNLSST-GIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-  461 (549)
T ss_dssp             TTCCEEECTTC-CCCC--CCSCCCCCTTCCEEECTTS-CCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-
T ss_pred             CCCCEEECCCC-CCcc--CChhhcccccccEEECCCC-CcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-
Confidence            78888888776 4441  1111224456666666666 343210000                0012444555555543 


Q ss_pred             CCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhhhhc
Q 026356          168 NMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQ  237 (240)
Q Consensus       168 ~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~d  237 (240)
                      .++.             +.  ....++.|+.++++.+.+....  ...+  ..+++|+.|++.+++-.++
T Consensus       462 ~l~~-------------ip--~~~~l~~L~~L~Ls~N~l~~~~--~~~~--~~l~~L~~L~l~~N~~~~~  512 (549)
T 2z81_A          462 KLKT-------------LP--DASLFPVLLVMKISRNQLKSVP--DGIF--DRLTSLQKIWLHTNPWDCS  512 (549)
T ss_dssp             CCSS-------------CC--CGGGCTTCCEEECCSSCCCCCC--TTGG--GGCTTCCEEECCSSCBCCC
T ss_pred             ccCc-------------CC--CcccCccCCEEecCCCccCCcC--HHHH--hcCcccCEEEecCCCccCC
Confidence            3321             00  0123566777788777766542  1122  5677888888877665443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.57  E-value=3.8e-10  Score=101.36  Aligned_cols=42  Identities=2%  Similarity=-0.018  Sum_probs=23.2

Q ss_pred             hcCCccceeecccCCCCCchhHHHHHHHhhccc-ccchhhhhhhhhhh
Q 026356          190 YHGIRFFQAVQINSSNGGDHLAFAYIIETNTYK-HGKEKHIIETIKTG  236 (240)
Q Consensus       190 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~c~~~~  236 (240)
                      +.+++.|+.++++++.+..... .  +  ..++ +|+.|++.++|-..
T Consensus       517 ~~~l~~L~~L~l~~N~l~~~p~-~--~--~~l~~~L~~l~l~~N~~~c  559 (606)
T 3vq2_A          517 YNQLYSLSTLDCSFNRIETSKG-I--L--QHFPKSLAFFNLTNNSVAC  559 (606)
T ss_dssp             TTTCTTCCEEECTTSCCCCEES-C--G--GGSCTTCCEEECCSCCCCC
T ss_pred             ccCCCcCCEEECCCCcCcccCH-h--H--hhhcccCcEEEccCCCccc
Confidence            3455667777777666653311 1  2  3444 47777776655433

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.56  E-value=1e-08  Score=84.76  Aligned_cols=172  Identities=17%  Similarity=0.113  Sum_probs=96.3

Q ss_pred             CeEEeccCCCCCCh-HHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHH-H-HHHH
Q 026356           23 PKVIDLREMNNAGN-RLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDK-G-IEII   99 (240)
Q Consensus        23 ~~~L~l~~~~~~~~-~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~-~-~~~l   99 (240)
                      .+.|++++|...+. ..+..+.....++|++|+++++ .+.......     ...+++|+.|+++++ .++.. + ...+
T Consensus       123 L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~-----~~~l~~L~~L~Ls~N-~l~~~~~~~~~~  195 (312)
T 1wwl_A          123 LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQ-----VRVFPALSTLDLSDN-PELGERGLISAL  195 (312)
T ss_dssp             CSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTT-----CCCCSSCCEEECCSC-TTCHHHHHHHHS
T ss_pred             ccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHH-----hccCCCCCEEECCCC-CcCcchHHHHHH
Confidence            34499998874332 1222222112378888888884 454422211     245678888888885 54432 2 2222


Q ss_pred             H-hcCCCCCEEEecCCCCCCH--HHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHH
Q 026356          100 S-STCPELKVFSIYWNVRVTD--IGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFY  176 (240)
Q Consensus       100 ~-~~~~~L~~L~l~~~~~l~~--~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~  176 (240)
                      . ..+++|++|+++++ .++.  .....+...+++|+.|+++++ .+++.........+++|+.|+++++ .++.-    
T Consensus       196 ~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~i----  268 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFT-GLKQV----  268 (312)
T ss_dssp             CTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTS-CCSSC----
T ss_pred             HhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCC-ccChh----
Confidence            1 45788888888877 5652  233345567788888888888 5655321111123567888888774 45421    


Q ss_pred             HHHhChhhhhHH-----------HhcCCccceeecccCCCCCch
Q 026356          177 IWSNNILLMSEF-----------IYHGIRFFQAVQINSSNGGDH  209 (240)
Q Consensus       177 l~~~~~~~l~~l-----------~~~~~~~L~~l~l~~~~~~~~  209 (240)
                       ...-...++.+           .+..++.|+.++++.+.+.+.
T Consensus       269 -p~~~~~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          269 -PKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             -CSSCCSEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTTTCC
T ss_pred             -hhhccCCceEEECCCCCCCCChhHhhCCCCCEEeccCCCCCCC
Confidence             00000112211           135667789999988877653

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.55  E-value=2.6e-10  Score=102.46  Aligned_cols=31  Identities=6%  Similarity=0.070  Sum_probs=15.7

Q ss_pred             EEeccCCCCCChHHHHHhhhhcCCCCceEeccCC
Q 026356           25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFA   58 (240)
Q Consensus        25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c   58 (240)
                      .|++++|..... .  ...+..+++|+.|+++++
T Consensus       305 ~L~l~~n~l~~~-~--~~~~~~l~~L~~L~l~~n  335 (606)
T 3t6q_A          305 KLVLSANKFENL-C--QISASNFPSLTHLSIKGN  335 (606)
T ss_dssp             EEECTTCCCSBG-G--GGCGGGCTTCSEEECCSC
T ss_pred             EEECccCCcCcC-c--hhhhhccCcCCEEECCCC
Confidence            377777763221 1  112235566666666664

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.55  E-value=1.6e-08  Score=89.11  Aligned_cols=161  Identities=16%  Similarity=0.135  Sum_probs=74.9

Q ss_pred             cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHH-HHHHHHhcCCCCCEEEecCCCCCCHHHHHH
Q 026356           46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDK-GIEIISSTCPELKVFSIYWNVRVTDIGIQH  124 (240)
Q Consensus        46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~-~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~  124 (240)
                      .+++|++|+++++ .+++.....     ...+++|+.|+++++ .++.- .+......+++|++|+++++ .+++..-..
T Consensus       322 ~l~~L~~L~Ls~n-~l~~~~~~~-----~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~  393 (520)
T 2z7x_B          322 KISPFLHLDFSNN-LLTDTVFEN-----CGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKKG  393 (520)
T ss_dssp             SCCCCCEEECCSS-CCCTTTTTT-----CCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGGC
T ss_pred             hCCcccEEEeECC-ccChhhhhh-----hccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCC-cCCcccccc
Confidence            4455555555552 343311111     133455666666553 44431 11111223555666666554 232210001


Q ss_pred             HHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCC
Q 026356          125 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSS  204 (240)
Q Consensus       125 l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~  204 (240)
                      ....+++|++|++++| .+++.....+   .++|+.|++++| .++.     +    +.     ...+++.|+.++++.+
T Consensus       394 ~~~~l~~L~~L~Ls~N-~l~~~~~~~l---~~~L~~L~Ls~N-~l~~-----i----p~-----~~~~l~~L~~L~L~~N  454 (520)
T 2z7x_B          394 DCSWTKSLLSLNMSSN-ILTDTIFRCL---PPRIKVLDLHSN-KIKS-----I----PK-----QVVKLEALQELNVASN  454 (520)
T ss_dssp             SCCCCTTCCEEECCSS-CCCGGGGGSC---CTTCCEEECCSS-CCCC-----C----CG-----GGGGCTTCCEEECCSS
T ss_pred             hhccCccCCEEECcCC-CCCcchhhhh---cccCCEEECCCC-cccc-----c----ch-----hhhcCCCCCEEECCCC
Confidence            1123455666666655 4443221111   145666666654 3331     0    00     1235667778888777


Q ss_pred             CCCchhHHHHHHHhhcccccchhhhhhhhhhhc
Q 026356          205 NGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQ  237 (240)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~d  237 (240)
                      .+..... . .+  ..+++|++|++.+++-.+|
T Consensus       455 ~l~~l~~-~-~~--~~l~~L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          455 QLKSVPD-G-IF--DRLTSLQKIWLHTNPWDCS  483 (520)
T ss_dssp             CCCCCCT-T-TT--TTCTTCCEEECCSSCBCCC
T ss_pred             cCCccCH-H-Hh--ccCCcccEEECcCCCCccc
Confidence            7664311 1 12  4677888888877665443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.54  E-value=1.5e-09  Score=86.91  Aligned_cols=155  Identities=12%  Similarity=0.193  Sum_probs=89.4

Q ss_pred             EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCC
Q 026356           25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCP  104 (240)
Q Consensus        25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~  104 (240)
                      .|+++++.....   ..-.+..+++|++|++++ +.+.......     ...+++|+.|+++++ .++......+ ..++
T Consensus        39 ~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~-n~l~~~~~~~-----~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~  107 (251)
T 3m19_A           39 KLDLQSTGLATL---SDATFRGLTKLTWLNLDY-NQLQTLSAGV-----FDDLTELGTLGLANN-QLASLPLGVF-DHLT  107 (251)
T ss_dssp             EEECTTSCCCCC---CTTTTTTCTTCCEEECTT-SCCCCCCTTT-----TTTCTTCCEEECTTS-CCCCCCTTTT-TTCT
T ss_pred             EEEccCCCcCcc---CHhHhcCcccCCEEECCC-CcCCccCHhH-----hccCCcCCEEECCCC-cccccChhHh-cccC
Confidence            488887773221   111234678888888888 4555422111     234578888888884 5553221111 2477


Q ss_pred             CCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhh
Q 026356          105 ELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILL  184 (240)
Q Consensus       105 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~  184 (240)
                      +|++|+++++ .++.... .....+++|+.|+++++ .++......+ ..+++|+.|+++++ .++...        +  
T Consensus       108 ~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~--------~--  172 (251)
T 3m19_A          108 QLDKLYLGGN-QLKSLPS-GVFDRLTKLKELRLNTN-QLQSIPAGAF-DKLTNLQTLSLSTN-QLQSVP--------H--  172 (251)
T ss_dssp             TCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCSCCC--------T--
T ss_pred             CCCEEEcCCC-cCCCcCh-hHhccCCcccEEECcCC-cCCccCHHHc-CcCcCCCEEECCCC-cCCccC--------H--
Confidence            8888888876 4542111 11235678888888888 6663222112 34678888888884 554210        0  


Q ss_pred             hhHHHhcCCccceeecccCCCCCc
Q 026356          185 MSEFIYHGIRFFQAVQINSSNGGD  208 (240)
Q Consensus       185 l~~l~~~~~~~L~~l~l~~~~~~~  208 (240)
                         -.+.+++.|+.++++.+.+..
T Consensus       173 ---~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          173 ---GAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             ---TTTTTCTTCCEEECCSCCBCT
T ss_pred             ---HHHhCCCCCCEEEeeCCceeC
Confidence               023556778888887776643

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.54  E-value=2.2e-08  Score=82.11  Aligned_cols=147  Identities=17%  Similarity=0.205  Sum_probs=108.0

Q ss_pred             hcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHH
Q 026356           45 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH  124 (240)
Q Consensus        45 ~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~  124 (240)
                      ..+++|+.|+++++ .+.+..  .     ...+++|+.|+++++ .+++..  . ...+++|+.|+++++ .+++.  ..
T Consensus        43 ~~l~~L~~L~l~~~-~i~~~~--~-----~~~l~~L~~L~L~~n-~l~~~~--~-l~~l~~L~~L~l~~n-~l~~~--~~  107 (291)
T 1h6t_A           43 NELNSIDQIIANNS-DIKSVQ--G-----IQYLPNVTKLFLNGN-KLTDIK--P-LANLKNLGWLFLDEN-KVKDL--SS  107 (291)
T ss_dssp             HHHHTCCEEECTTS-CCCCCT--T-----GGGCTTCCEEECCSS-CCCCCG--G-GTTCTTCCEEECCSS-CCCCG--GG
T ss_pred             hhcCcccEEEccCC-CcccCh--h-----HhcCCCCCEEEccCC-ccCCCc--c-cccCCCCCEEECCCC-cCCCC--hh
Confidence            36788999999995 454421  1     133599999999996 665422  1 346999999999987 56542  22


Q ss_pred             HHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCC
Q 026356          125 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSS  204 (240)
Q Consensus       125 l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~  204 (240)
                       ...+++|+.|++++| .+++.  ..+ ..+++|+.|++++| .+++.          .     .+.+++.|+.++++.+
T Consensus       108 -l~~l~~L~~L~L~~n-~i~~~--~~l-~~l~~L~~L~l~~n-~l~~~----------~-----~l~~l~~L~~L~L~~N  166 (291)
T 1h6t_A          108 -LKDLKKLKSLSLEHN-GISDI--NGL-VHLPQLESLYLGNN-KITDI----------T-----VLSRLTKLDTLSLEDN  166 (291)
T ss_dssp             -GTTCTTCCEEECTTS-CCCCC--GGG-GGCTTCCEEECCSS-CCCCC----------G-----GGGGCTTCSEEECCSS
T ss_pred             -hccCCCCCEEECCCC-cCCCC--hhh-cCCCCCCEEEccCC-cCCcc----------h-----hhccCCCCCEEEccCC
Confidence             457889999999999 67763  223 35899999999996 66542          0     3466788999999999


Q ss_pred             CCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356          205 NGGDHLAFAYIIETNTYKHGKEKHIIETI  233 (240)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  233 (240)
                      .+.+...    +  ..+++|+.|+++++.
T Consensus       167 ~l~~~~~----l--~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          167 QISDIVP----L--AGLTKLQNLYLSKNH  189 (291)
T ss_dssp             CCCCCGG----G--TTCTTCCEEECCSSC
T ss_pred             ccccchh----h--cCCCccCEEECCCCc
Confidence            8887632    3  678999999998874

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.54  E-value=1.5e-09  Score=96.23  Aligned_cols=134  Identities=16%  Similarity=0.174  Sum_probs=80.7

Q ss_pred             CeEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhc
Q 026356           23 PKVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST  102 (240)
Q Consensus        23 ~~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~  102 (240)
                      .+.|++++|. +......  .+..+++|++|+++++ .+.+.....     ...+++|++|+++++ .++...-..+. .
T Consensus        28 L~~L~Ls~n~-l~~~~~~--~~~~l~~L~~L~Ls~n-~i~~~~~~~-----~~~l~~L~~L~Ls~n-~l~~~~~~~~~-~   96 (549)
T 2z81_A           28 MKSLDLSFNK-ITYIGHG--DLRACANLQVLILKSS-RINTIEGDA-----FYSLGSLEHLDLSDN-HLSSLSSSWFG-P   96 (549)
T ss_dssp             CCEEECCSSC-CCEECSS--TTSSCTTCCEEECTTS-CCCEECTTT-----TTTCTTCCEEECTTS-CCCSCCHHHHT-T
T ss_pred             ccEEECcCCc-cCccChh--hhhcCCcccEEECCCC-CcCccChhh-----ccccccCCEEECCCC-ccCccCHHHhc-c
Confidence            3458888887 3321111  2347888999999884 555422111     244588999999885 56544333343 4


Q ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCC
Q 026356          103 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMI  170 (240)
Q Consensus       103 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it  170 (240)
                      +++|++|+++++ .++..++......+++|++|++++|..+++.....+ .++++|+.|+++++ .++
T Consensus        97 l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~l~~L~~L~L~~n-~l~  161 (549)
T 2z81_A           97 LSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF-AGLTSLNELEIKAL-SLR  161 (549)
T ss_dssp             CTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT-TTCCEEEEEEEEET-TCC
T ss_pred             CCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHhhh-hcccccCeeeccCC-ccc
Confidence            888999999877 444322222234677888888888843443211122 34778888888875 443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.52  E-value=7.1e-08  Score=86.94  Aligned_cols=144  Identities=20%  Similarity=0.261  Sum_probs=102.0

Q ss_pred             eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356           24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC  103 (240)
Q Consensus        24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~  103 (240)
                      +.|+|++|......   .  +..+++|+.|+++++ .+.+..       ....+++|+.|+++++ .+++  +..+ ..+
T Consensus        68 ~~L~Ls~N~l~~~~---~--l~~l~~L~~L~Ls~N-~l~~l~-------~l~~l~~L~~L~Ls~N-~l~~--l~~l-~~l  130 (605)
T 1m9s_A           68 TKLFLNGNKLTDIK---P--LTNLKNLGWLFLDEN-KIKDLS-------SLKDLKKLKSLSLEHN-GISD--INGL-VHL  130 (605)
T ss_dssp             CEEECTTSCCCCCG---G--GGGCTTCCEEECCSS-CCCCCT-------TSTTCTTCCEEECTTS-CCCC--CGGG-GGC
T ss_pred             CEEEeeCCCCCCCh---h--hccCCCCCEEECcCC-CCCCCh-------hhccCCCCCEEEecCC-CCCC--Cccc-cCC
Confidence            34999999743321   1  458999999999995 565521       1356799999999996 6654  2233 358


Q ss_pred             CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChh
Q 026356          104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNIL  183 (240)
Q Consensus       104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~  183 (240)
                      ++|+.|++++| .+++.   .....+++|+.|++++| .+++...   ...+++|+.|+|++| .+++.         + 
T Consensus       131 ~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N-~i~~l---------~-  191 (605)
T 1m9s_A          131 PQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKN-HISDL---------R-  191 (605)
T ss_dssp             TTCSEEECCSS-CCCCC---GGGGSCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCBC---------G-
T ss_pred             CccCEEECCCC-ccCCc---hhhcccCCCCEEECcCC-cCCCchh---hccCCCCCEEECcCC-CCCCC---------h-
Confidence            99999999988 56543   23457899999999999 6765433   346899999999996 66651         1 


Q ss_pred             hhhHHHhcCCccceeecccCCCCCc
Q 026356          184 LMSEFIYHGIRFFQAVQINSSNGGD  208 (240)
Q Consensus       184 ~l~~l~~~~~~~L~~l~l~~~~~~~  208 (240)
                           .+..++.|+.|+++.+.+..
T Consensus       192 -----~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          192 -----ALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             -----GGTTCTTCSEEECCSEEEEC
T ss_pred             -----HHccCCCCCEEEccCCcCcC
Confidence                 23557778888877665544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.52  E-value=1.3e-10  Score=103.52  Aligned_cols=91  Identities=12%  Similarity=0.114  Sum_probs=46.9

Q ss_pred             cCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCC
Q 026356          128 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGG  207 (240)
Q Consensus       128 ~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~  207 (240)
                      .+++|+.|++++| .+++..+......+++|+.|++++| .+++..        +.     .+.+++.|+.++++.+.+.
T Consensus       443 ~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~--------~~-----~~~~l~~L~~L~l~~n~l~  507 (570)
T 2z63_A          443 GLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC-QLEQLS--------PT-----AFNSLSSLQVLNMASNQLK  507 (570)
T ss_dssp             TCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEEC--------TT-----TTTTCTTCCEEECCSSCCS
T ss_pred             cCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCCC-ccccCC--------hh-----hhhcccCCCEEeCCCCcCC
Confidence            4455555555555 3432111111123555666666654 333210        00     2355677778888777666


Q ss_pred             chhHHHHHHHhhcccccchhhhhhhhhhhc
Q 026356          208 DHLAFAYIIETNTYKHGKEKHIIETIKTGQ  237 (240)
Q Consensus       208 ~~~~~~~~~~~~~~~~L~~L~l~~c~~~~d  237 (240)
                      +..  ...+  ..+++|++|++.+++-.++
T Consensus       508 ~~~--~~~~--~~l~~L~~L~l~~N~~~~~  533 (570)
T 2z63_A          508 SVP--DGIF--DRLTSLQKIWLHTNPWDCS  533 (570)
T ss_dssp             CCC--TTTT--TTCTTCCEEECCSSCBCCC
T ss_pred             CCC--HHHh--hcccCCcEEEecCCcccCC
Confidence            541  1122  4677888888877665443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.50  E-value=1.1e-08  Score=82.75  Aligned_cols=145  Identities=14%  Similarity=0.165  Sum_probs=76.9

Q ss_pred             cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHH
Q 026356           46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL  125 (240)
Q Consensus        46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l  125 (240)
                      .+++|+.|+++++ .+.+..  .     ...+++|+.|+++++ .+++..-   ...+++|++|+++++ .+++-  ..+
T Consensus        39 ~l~~L~~L~l~~n-~i~~l~--~-----l~~l~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~L~~N-~l~~l--~~~  103 (263)
T 1xeu_A           39 ELSGVQNFNGDNS-NIQSLA--G-----MQFFTNLKELHLSHN-QISDLSP---LKDLTKLEELSVNRN-RLKNL--NGI  103 (263)
T ss_dssp             HHTTCSEEECTTS-CCCCCT--T-----GGGCTTCCEEECCSS-CCCCCGG---GTTCSSCCEEECCSS-CCSCC--TTC
T ss_pred             hcCcCcEEECcCC-Ccccch--H-----HhhCCCCCEEECCCC-ccCCChh---hccCCCCCEEECCCC-ccCCc--Ccc
Confidence            5566777777763 344321  1     123467777777764 4443221   234667777777765 33321  111


Q ss_pred             HHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCC
Q 026356          126 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSN  205 (240)
Q Consensus       126 ~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~  205 (240)
                      . . ++|+.|++++| .+++.  ..+ ..+++|+.|+++++ .+++.             .  .+.+++.|+.++++.+.
T Consensus       104 ~-~-~~L~~L~L~~N-~l~~~--~~l-~~l~~L~~L~Ls~N-~i~~~-------------~--~l~~l~~L~~L~L~~N~  161 (263)
T 1xeu_A          104 P-S-ACLSRLFLDNN-ELRDT--DSL-IHLKNLEILSIRNN-KLKSI-------------V--MLGFLSKLEVLDLHGNE  161 (263)
T ss_dssp             C-C-SSCCEEECCSS-CCSBS--GGG-TTCTTCCEEECTTS-CCCBC-------------G--GGGGCTTCCEEECTTSC
T ss_pred             c-c-CcccEEEccCC-ccCCC--hhh-cCcccccEEECCCC-cCCCC-------------h--HHccCCCCCEEECCCCc
Confidence            1 1 56777777777 55542  112 24666777777764 45431             0  12445666666666666


Q ss_pred             CCchhHHHHHHHhhcccccchhhhhhhh
Q 026356          206 GGDHLAFAYIIETNTYKHGKEKHIIETI  233 (240)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~  233 (240)
                      +.+.    ..+  ..+++|+.|++++++
T Consensus       162 i~~~----~~l--~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          162 ITNT----GGL--TRLKKVNWIDLTGQK  183 (263)
T ss_dssp             CCBC----TTS--TTCCCCCEEEEEEEE
T ss_pred             Ccch----HHh--ccCCCCCEEeCCCCc
Confidence            6554    112  456666666666554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.49  E-value=1.1e-09  Score=91.33  Aligned_cols=176  Identities=15%  Similarity=0.154  Sum_probs=108.6

Q ss_pred             EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCC
Q 026356           25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCP  104 (240)
Q Consensus        25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~  104 (240)
                      .|+++++....   +.. .+.++++|++|+++++ .+..  +...    ...+++|++|+++++ .++.  +..-...++
T Consensus        85 ~L~L~~n~l~~---lp~-~l~~l~~L~~L~L~~n-~l~~--lp~~----~~~l~~L~~L~Ls~n-~l~~--lp~~l~~l~  150 (328)
T 4fcg_A           85 ALELRSVPLPQ---FPD-QAFRLSHLQHMTIDAA-GLME--LPDT----MQQFAGLETLTLARN-PLRA--LPASIASLN  150 (328)
T ss_dssp             EEEEESSCCSS---CCS-CGGGGTTCSEEEEESS-CCCC--CCSC----GGGGTTCSEEEEESC-CCCC--CCGGGGGCT
T ss_pred             EEEccCCCchh---cCh-hhhhCCCCCEEECCCC-Cccc--hhHH----HhccCCCCEEECCCC-cccc--CcHHHhcCc
Confidence            38888877321   111 1236888999999884 4552  1110    133488999999885 5551  111123588


Q ss_pred             CCCEEEecCCCCCCHHHHHHH--------HHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHH
Q 026356          105 ELKVFSIYWNVRVTDIGIQHL--------VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFY  176 (240)
Q Consensus       105 ~L~~L~l~~~~~l~~~~~~~l--------~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~  176 (240)
                      +|++|++++|..++... ..+        ...+++|+.|++++| .++.  +..-...+++|+.|++++| .++.     
T Consensus       151 ~L~~L~L~~n~~~~~~p-~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~--lp~~l~~l~~L~~L~L~~N-~l~~-----  220 (328)
T 4fcg_A          151 RLRELSIRACPELTELP-EPLASTDASGEHQGLVNLQSLRLEWT-GIRS--LPASIANLQNLKSLKIRNS-PLSA-----  220 (328)
T ss_dssp             TCCEEEEEEETTCCCCC-SCSEEEC-CCCEEESTTCCEEEEEEE-CCCC--CCGGGGGCTTCCEEEEESS-CCCC-----
T ss_pred             CCCEEECCCCCCccccC-hhHhhccchhhhccCCCCCEEECcCC-CcCc--chHhhcCCCCCCEEEccCC-CCCc-----
Confidence            89999998864332110 001        124788999999988 6662  1111245889999999985 5542     


Q ss_pred             HHHhChhhhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhhhhc
Q 026356          177 IWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQ  237 (240)
Q Consensus       177 l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~d  237 (240)
                          -+.     .+.+++.|+.++++.+.+.....  ..+  ..+++|++|++.+|...+.
T Consensus       221 ----l~~-----~l~~l~~L~~L~Ls~n~~~~~~p--~~~--~~l~~L~~L~L~~n~~~~~  268 (328)
T 4fcg_A          221 ----LGP-----AIHHLPKLEELDLRGCTALRNYP--PIF--GGRAPLKRLILKDCSNLLT  268 (328)
T ss_dssp             ----CCG-----GGGGCTTCCEEECTTCTTCCBCC--CCT--TCCCCCCEEECTTCTTCCB
T ss_pred             ----Cch-----hhccCCCCCEEECcCCcchhhhH--HHh--cCCCCCCEEECCCCCchhh
Confidence                111     24567889999998876665421  122  5789999999999876554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.49  E-value=8.3e-10  Score=99.15  Aligned_cols=87  Identities=13%  Similarity=0.082  Sum_probs=47.3

Q ss_pred             cCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCC
Q 026356          128 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGG  207 (240)
Q Consensus       128 ~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~  207 (240)
                      .+++|++|++++| .+++..+......+++|+.|++++| .++..        .+     -.+.+++.|+.++++.+.+.
T Consensus       446 ~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~--------~~-----~~~~~l~~L~~L~Ls~N~l~  510 (606)
T 3vq2_A          446 GLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKC-QLEQI--------SW-----GVFDTLHRLQLLNMSHNNLL  510 (606)
T ss_dssp             TCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEE--------CT-----TTTTTCTTCCEEECCSSCCS
T ss_pred             CCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCC-cCCcc--------Ch-----hhhcccccCCEEECCCCcCC
Confidence            3455555555555 3433211111123455566666554 33320        00     13466778888888888777


Q ss_pred             chhHHHHHHHhhcccccchhhhhhhh
Q 026356          208 DHLAFAYIIETNTYKHGKEKHIIETI  233 (240)
Q Consensus       208 ~~~~~~~~~~~~~~~~L~~L~l~~c~  233 (240)
                      +..  ...+  ..+++|++|++++|.
T Consensus       511 ~~~--~~~~--~~l~~L~~L~l~~N~  532 (606)
T 3vq2_A          511 FLD--SSHY--NQLYSLSTLDCSFNR  532 (606)
T ss_dssp             CEE--GGGT--TTCTTCCEEECTTSC
T ss_pred             CcC--HHHc--cCCCcCCEEECCCCc
Confidence            652  1122  567888888888775

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.48  E-value=1.3e-08  Score=84.38  Aligned_cols=124  Identities=10%  Similarity=0.054  Sum_probs=61.4

Q ss_pred             CCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCC
Q 026356           77 LQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ  156 (240)
Q Consensus        77 ~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~  156 (240)
                      +++|+.|+++++ .++...      ..++|++|+++++ .++...    ...+++|+.|+++++ .++......+ ..++
T Consensus        79 l~~L~~L~Ls~n-~l~~l~------~~~~L~~L~l~~n-~l~~~~----~~~~~~L~~L~l~~N-~l~~~~~~~~-~~l~  144 (317)
T 3o53_A           79 LSTLRTLDLNNN-YVQELL------VGPSIETLHAANN-NISRVS----CSRGQGKKNIYLANN-KITMLRDLDE-GCRS  144 (317)
T ss_dssp             CTTCCEEECCSS-EEEEEE------ECTTCCEEECCSS-CCSEEE----ECCCSSCEEEECCSS-CCCSGGGBCT-GGGS
T ss_pred             cCCCCEEECcCC-cccccc------CCCCcCEEECCCC-ccCCcC----ccccCCCCEEECCCC-CCCCccchhh-hccC
Confidence            355555555553 333211      2355566666554 332211    123456666666666 4543211111 2356


Q ss_pred             CCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356          157 ELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  233 (240)
Q Consensus       157 ~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  233 (240)
                      +|+.|+++++ .+++.....            ...+++.|+.++++.+.+.....      ...+++|++|+++++.
T Consensus       145 ~L~~L~Ls~N-~l~~~~~~~------------~~~~l~~L~~L~L~~N~l~~~~~------~~~l~~L~~L~Ls~N~  202 (317)
T 3o53_A          145 RVQYLDLKLN-EIDTVNFAE------------LAASSDTLEHLNLQYNFIYDVKG------QVVFAKLKTLDLSSNK  202 (317)
T ss_dssp             SEEEEECTTS-CCCEEEGGG------------GGGGTTTCCEEECTTSCCCEEEC------CCCCTTCCEEECCSSC
T ss_pred             CCCEEECCCC-CCCcccHHH------------HhhccCcCCEEECCCCcCccccc------ccccccCCEEECCCCc
Confidence            6677777664 444311100            11345667777777776665411      1236777777776653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.47  E-value=9.7e-10  Score=93.59  Aligned_cols=109  Identities=18%  Similarity=0.236  Sum_probs=51.6

Q ss_pred             cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHH
Q 026356           46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL  125 (240)
Q Consensus        46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l  125 (240)
                      .+++|+.|+++++ .+.+.....     ...+++|++|+++++ .++......+ ..+++|++|+++++ .++.-. ..+
T Consensus        67 ~l~~L~~L~L~~n-~i~~~~~~~-----~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~l~-~~~  136 (390)
T 3o6n_A           67 SFRQVELLNLNDL-QIEEIDTYA-----FAYAHTIQKLYMGFN-AIRYLPPHVF-QNVPLLTVLVLERN-DLSSLP-RGI  136 (390)
T ss_dssp             HCCCCSEEECTTS-CCCEECTTT-----TTTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCCCC-TTT
T ss_pred             ccccCcEEECCCC-cccccChhh-----ccCCCCcCEEECCCC-CCCcCCHHHh-cCCCCCCEEECCCC-ccCcCC-HHH
Confidence            5667777777763 344322111     133466677777664 4433211111 23566666666655 333111 011


Q ss_pred             HHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCC
Q 026356          126 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY  166 (240)
Q Consensus       126 ~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c  166 (240)
                      ...+++|++|+++++ .++......+ ..+++|+.|+++++
T Consensus       137 ~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~l~~n  175 (390)
T 3o6n_A          137 FHNTPKLTTLSMSNN-NLERIEDDTF-QATTSLQNLQLSSN  175 (390)
T ss_dssp             TTTCTTCCEEECCSS-CCCBCCTTTT-SSCTTCCEEECCSS
T ss_pred             hcCCCCCcEEECCCC-ccCccChhhc-cCCCCCCEEECCCC
Confidence            234556666666666 4443211111 23556666666653

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.47  E-value=1.7e-09  Score=100.18  Aligned_cols=133  Identities=19%  Similarity=0.211  Sum_probs=67.2

Q ss_pred             CeEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHH--HH
Q 026356           23 PKVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEI--IS  100 (240)
Q Consensus        23 ~~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~--l~  100 (240)
                      .+.|+|++|...+. ......+.++++|++|+++++ .+.......    ....+++|++|+++++ .++......  ..
T Consensus       102 L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~----~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~  174 (768)
T 3rgz_A          102 LTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSN-TLDFPGKVS----GGLKLNSLEVLDLSAN-SISGANVVGWVLS  174 (768)
T ss_dssp             CCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSS-EEECCSSCC----SCCCCTTCSEEECCSS-CCEEETHHHHHHT
T ss_pred             CCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCC-ccCCcCCHH----HhccCCCCCEEECCCC-ccCCcCChhhhhh
Confidence            33488887763321 111002347778888888874 232111000    0134577888888875 554332222  12


Q ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCC
Q 026356          101 STCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMI  170 (240)
Q Consensus       101 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it  170 (240)
                      ..+++|++|+++++. +++..  .+ ..+++|++|++++| .++...- . ...+++|+.|++++| .++
T Consensus       175 ~~l~~L~~L~Ls~n~-l~~~~--~~-~~l~~L~~L~Ls~n-~l~~~~~-~-l~~l~~L~~L~Ls~n-~l~  236 (768)
T 3rgz_A          175 DGCGELKHLAISGNK-ISGDV--DV-SRCVNLEFLDVSSN-NFSTGIP-F-LGDCSALQHLDISGN-KLS  236 (768)
T ss_dssp             TCCTTCCEEECCSSE-EESCC--BC-TTCTTCCEEECCSS-CCCSCCC-B-CTTCCSCCEEECCSS-CCC
T ss_pred             ccCCCCCEEECCCCc-ccccC--Cc-ccCCcCCEEECcCC-cCCCCCc-c-cccCCCCCEEECcCC-cCC
Confidence            356777777777652 22110  00 35566777777766 4432111 1 234666777777664 444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.46  E-value=2.3e-09  Score=94.20  Aligned_cols=128  Identities=20%  Similarity=0.167  Sum_probs=63.2

Q ss_pred             eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHH------
Q 026356           24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIE------   97 (240)
Q Consensus        24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~------   97 (240)
                      +.|+|++|....   +..-.+..+++|+.|+++++ .+++..-       ...+++|+.|+++++ .+++....      
T Consensus        37 ~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-------l~~l~~L~~L~Ls~N-~l~~l~~~~~L~~L  104 (487)
T 3oja_A           37 KELDLSGNPLSQ---ISAADLAPFTKLELLNLSSN-VLYETLD-------LESLSTLRTLDLNNN-YVQELLVGPSIETL  104 (487)
T ss_dssp             CEEECCSSCCCC---CCGGGGTTCTTCCEEECTTS-CCEEEEE-------CTTCTTCCEEECCSS-EEEEEEECTTCCEE
T ss_pred             cEEEeeCCcCCC---CCHHHHhCCCCCCEEEeeCC-CCCCCcc-------cccCCCCCEEEecCC-cCCCCCCCCCcCEE
Confidence            348888887332   11112347788888888884 4543211       234577777777775 44321100      


Q ss_pred             ---------HHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCC
Q 026356           98 ---------IISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY  166 (240)
Q Consensus        98 ---------~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c  166 (240)
                               .....+++|+.|+++++ .++...-..+ ..+++|+.|+++++ .++......+...+++|+.|++++|
T Consensus       105 ~L~~N~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N  179 (487)
T 3oja_A          105 HAANNNISRVSCSRGQGKKNIYLANN-KITMLRDLDE-GCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN  179 (487)
T ss_dssp             ECCSSCCCCEEECCCSSCEEEECCSS-CCCSGGGBCG-GGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             ECcCCcCCCCCccccCCCCEEECCCC-CCCCCCchhh-cCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCC
Confidence                     00012344455555544 2332111111 23456666666666 5554333333334566666666664

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.45  E-value=1.9e-08  Score=83.60  Aligned_cols=100  Identities=14%  Similarity=0.154  Sum_probs=48.8

Q ss_pred             EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCC
Q 026356           25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCP  104 (240)
Q Consensus        25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~  104 (240)
                      .|++++|.... .  ....+..+++|++|+++++ .+.......     ...+++|++|+++++ .++.-..    ...+
T Consensus        56 ~L~L~~n~i~~-~--~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-----~~~l~~L~~L~Ls~n-~l~~l~~----~~~~  121 (330)
T 1xku_A           56 LLDLQNNKITE-I--KDGDFKNLKNLHTLILINN-KISKISPGA-----FAPLVKLERLYLSKN-QLKELPE----KMPK  121 (330)
T ss_dssp             EEECCSSCCCC-B--CTTTTTTCTTCCEEECCSS-CCCCBCTTT-----TTTCTTCCEEECCSS-CCSBCCS----SCCT
T ss_pred             EEECCCCcCCE-e--ChhhhccCCCCCEEECCCC-cCCeeCHHH-----hcCCCCCCEEECCCC-cCCccCh----hhcc
Confidence            48888876322 1  1111346778888888874 454321111     134577777777774 4432100    1124


Q ss_pred             CCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCC
Q 026356          105 ELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGC  140 (240)
Q Consensus       105 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c  140 (240)
                      +|++|+++++ .++..... ....+++|+.|+++++
T Consensus       122 ~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n  155 (330)
T 1xku_A          122 TLQELRVHEN-EITKVRKS-VFNGLNQMIVVELGTN  155 (330)
T ss_dssp             TCCEEECCSS-CCCBBCHH-HHTTCTTCCEEECCSS
T ss_pred             cccEEECCCC-cccccCHh-HhcCCccccEEECCCC
Confidence            5666666554 33322111 1234455555555555

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.45  E-value=3.7e-09  Score=97.87  Aligned_cols=109  Identities=17%  Similarity=0.213  Sum_probs=54.4

Q ss_pred             CCCCCEEEecCCCCCCHHHHHH--HHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHh
Q 026356          103 CPELKVFSIYWNVRVTDIGIQH--LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSN  180 (240)
Q Consensus       103 ~~~L~~L~l~~~~~l~~~~~~~--l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~  180 (240)
                      +++|++|+++++ .+++.....  ....+++|++|++++| .+++..-  . ..+++|+.|++++| .++..        
T Consensus       150 l~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~--~-~~l~~L~~L~Ls~n-~l~~~--------  215 (768)
T 3rgz_A          150 LNSLEVLDLSAN-SISGANVVGWVLSDGCGELKHLAISGN-KISGDVD--V-SRCVNLEFLDVSSN-NFSTG--------  215 (768)
T ss_dssp             CTTCSEEECCSS-CCEEETHHHHHHTTCCTTCCEEECCSS-EEESCCB--C-TTCTTCCEEECCSS-CCCSC--------
T ss_pred             CCCCCEEECCCC-ccCCcCChhhhhhccCCCCCEEECCCC-cccccCC--c-ccCCcCCEEECcCC-cCCCC--------
Confidence            455555555544 333221111  1234555555555555 3332110  0 23556666666664 22210        


Q ss_pred             ChhhhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhhh
Q 026356          181 NILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKT  235 (240)
Q Consensus       181 ~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~  235 (240)
                          +.  .+..++.|+.++++.+.+...  +...+  ..+++|++|++++|...
T Consensus       216 ----~~--~l~~l~~L~~L~Ls~n~l~~~--~~~~l--~~l~~L~~L~Ls~n~l~  260 (768)
T 3rgz_A          216 ----IP--FLGDCSALQHLDISGNKLSGD--FSRAI--STCTELKLLNISSNQFV  260 (768)
T ss_dssp             ----CC--BCTTCCSCCEEECCSSCCCSC--HHHHT--TTCSSCCEEECCSSCCE
T ss_pred             ----Cc--ccccCCCCCEEECcCCcCCCc--ccHHH--hcCCCCCEEECCCCccc
Confidence                00  135567777888877777654  22233  56777777777776543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.44  E-value=5.1e-09  Score=95.31  Aligned_cols=127  Identities=23%  Similarity=0.314  Sum_probs=59.8

Q ss_pred             EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCC
Q 026356           25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCP  104 (240)
Q Consensus        25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~  104 (240)
                      .|+++++....   +....+..+++|++|+++++ .+....-..+..     +++|+.|+++++ .++...-..++ .++
T Consensus        29 ~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~-----l~~L~~L~L~~n-~l~~l~~~~~~-~l~   97 (680)
T 1ziw_A           29 VLNLTHNQLRR---LPAANFTRYSQLTSLDVGFN-TISKLEPELCQK-----LPMLKVLNLQHN-ELSQLSDKTFA-FCT   97 (680)
T ss_dssp             EEECCSSCCCC---CCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHH-----CTTCCEEECCSS-CCCCCCTTTTT-TCT
T ss_pred             EEECCCCCCCC---cCHHHHhCCCcCcEEECCCC-ccCccCHHHHhc-----ccCcCEEECCCC-ccCccChhhhc-cCC
Confidence            37777776322   11112346677777777773 444322222221     267777777764 44321111111 366


Q ss_pred             CCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCC
Q 026356          105 ELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY  166 (240)
Q Consensus       105 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c  166 (240)
                      +|++|+++++ .++...... ...+++|++|++++| .++......+ .++++|+.|+++++
T Consensus        98 ~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n  155 (680)
T 1ziw_A           98 NLTELHLMSN-SIQKIKNNP-FVKQKNLITLDLSHN-GLSSTKLGTQ-VQLENLQELLLSNN  155 (680)
T ss_dssp             TCSEEECCSS-CCCCCCSCT-TTTCTTCCEEECCSS-CCSCCCCCSS-SCCTTCCEEECCSS
T ss_pred             CCCEEECCCC-ccCccChhH-ccccCCCCEEECCCC-cccccCchhh-cccccCCEEEccCC
Confidence            6677766655 232111001 134556666666666 3433211111 23555666666553

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.43  E-value=4.6e-09  Score=85.01  Aligned_cols=174  Identities=12%  Similarity=0.129  Sum_probs=111.6

Q ss_pred             eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356           24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC  103 (240)
Q Consensus        24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~  103 (240)
                      +.++++++....      +...-.+++++|+++++ .+......     ....+++|++|+++++ .++...- .+...+
T Consensus        19 ~~l~~~~~~l~~------ip~~~~~~l~~L~l~~n-~l~~~~~~-----~~~~l~~L~~L~l~~n-~l~~i~~-~~~~~l   84 (270)
T 2o6q_A           19 NSVDCSSKKLTA------IPSNIPADTKKLDLQSN-KLSSLPSK-----AFHRLTKLRLLYLNDN-KLQTLPA-GIFKEL   84 (270)
T ss_dssp             TEEECTTSCCSS------CCSCCCTTCSEEECCSS-CCSCCCTT-----SSSSCTTCCEEECCSS-CCSCCCT-TTTSSC
T ss_pred             CEEEccCCCCCc------cCCCCCCCCCEEECcCC-CCCeeCHH-----HhcCCCCCCEEECCCC-ccCeeCh-hhhcCC
Confidence            347777765321      21112357999999994 56543221     1245699999999995 5553111 112358


Q ss_pred             CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChh
Q 026356          104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNIL  183 (240)
Q Consensus       104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~  183 (240)
                      ++|++|+++++ .++.... .....+++|++|+++++ .++......+ ..+++|+.|+++++ .++..           
T Consensus        85 ~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~-----------  148 (270)
T 2o6q_A           85 KNLETLWVTDN-KLQALPI-GVFDQLVNLAELRLDRN-QLKSLPPRVF-DSLTKLTYLSLGYN-ELQSL-----------  148 (270)
T ss_dssp             TTCCEEECCSS-CCCCCCT-TTTTTCSSCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCCC-----------
T ss_pred             CCCCEEECCCC-cCCcCCH-hHcccccCCCEEECCCC-ccCeeCHHHh-CcCcCCCEEECCCC-cCCcc-----------
Confidence            99999999987 4543221 12346789999999999 6664332222 35889999999996 55431           


Q ss_pred             hhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356          184 LMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  233 (240)
Q Consensus       184 ~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  233 (240)
                        ..-.+.+++.|+.++++.+.+.....  ..+  ..+++|+.|+++++.
T Consensus       149 --~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~--~~l~~L~~L~L~~N~  192 (270)
T 2o6q_A          149 --PKGVFDKLTSLKELRLYNNQLKRVPE--GAF--DKLTELKTLKLDNNQ  192 (270)
T ss_dssp             --CTTTTTTCTTCCEEECCSSCCSCCCT--TTT--TTCTTCCEEECCSSC
T ss_pred             --CHhHccCCcccceeEecCCcCcEeCh--hHh--ccCCCcCEEECCCCc
Confidence              00124677889999998887765421  112  567899999998774

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.42  E-value=1.1e-09  Score=87.01  Aligned_cols=188  Identities=9%  Similarity=0.121  Sum_probs=82.7

Q ss_pred             EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCC
Q 026356           25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCP  104 (240)
Q Consensus        25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~  104 (240)
                      .|+++++....   +..-.+..+++|+.|+++++..++...-..     ...+++|++|++++|+.++......+ ..++
T Consensus        35 ~L~l~~n~l~~---i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~-----f~~l~~L~~L~l~~~n~l~~i~~~~f-~~l~  105 (239)
T 2xwt_C           35 TLKLIETHLRT---IPSHAFSNLPNISRIYVSIDVTLQQLESHS-----FYNLSKVTHIEIRNTRNLTYIDPDAL-KELP  105 (239)
T ss_dssp             EEEEESCCCSE---ECTTTTTTCTTCCEEEEECCSSCCEECTTT-----EESCTTCCEEEEEEETTCCEECTTSE-ECCT
T ss_pred             EEEEeCCcceE---ECHHHccCCCCCcEEeCCCCCCcceeCHhH-----cCCCcCCcEEECCCCCCeeEcCHHHh-CCCC
Confidence            37777665221   111112356777777777642243221111     13346777777776444442111111 2366


Q ss_pred             CCCEEEecCCCCCCHHHHHHHHHcCCcCC---EEeccCCCCCCHHHHHHHHHhCCCCc-EEeccCCCCCCHHHHHHHHH-
Q 026356          105 ELKVFSIYWNVRVTDIGIQHLVKNCKHII---DLNLSGCKNLLDKSLQLIADNYQELE-SLNLTRYVNMILLGLFYIWS-  179 (240)
Q Consensus       105 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~---~L~l~~c~~ltd~~l~~l~~~~~~L~-~L~l~~c~~it~~~~~~l~~-  179 (240)
                      +|++|+++++ .++.  +.. ...+++|+   .|+++++..++......+ ..+++|+ .|+++++ .++.-....+.. 
T Consensus       106 ~L~~L~l~~n-~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~-~~l~~L~~~L~l~~n-~l~~i~~~~~~~~  179 (239)
T 2xwt_C          106 LLKFLGIFNT-GLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF-QGLCNETLTLKLYNN-GFTSVQGYAFNGT  179 (239)
T ss_dssp             TCCEEEEEEE-CCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT-TTTBSSEEEEECCSC-CCCEECTTTTTTC
T ss_pred             CCCEEeCCCC-CCcc--ccc-cccccccccccEEECCCCcchhhcCcccc-cchhcceeEEEcCCC-CCcccCHhhcCCC
Confidence            6777777655 2322  111 22444555   666666533432111111 2355566 6666553 333210000000 


Q ss_pred             --------hC--hhhhhHHHhcCC-ccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhh
Q 026356          180 --------NN--ILLMSEFIYHGI-RFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK  234 (240)
Q Consensus       180 --------~~--~~~l~~l~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  234 (240)
                              ++  ...+..-.+.++ +.|+.++++.+.+....       ...+++|+.|.+++++.
T Consensus       180 ~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~-------~~~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP-------SKGLEHLKELIARNTWT  238 (239)
T ss_dssp             EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCC-------CTTCTTCSEEECTTC--
T ss_pred             CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCC-------hhHhccCceeeccCccC
Confidence                    00  000101123445 66667777666655431       12456777777766653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.41  E-value=1.8e-09  Score=97.17  Aligned_cols=85  Identities=18%  Similarity=0.249  Sum_probs=35.9

Q ss_pred             cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHH
Q 026356           46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL  125 (240)
Q Consensus        46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l  125 (240)
                      .+++|+.|+++++ .+.+.....     ...+++|+.|+++++ .++......+ ..+++|+.|+++++ .++... ..+
T Consensus        73 ~l~~L~~L~L~~n-~l~~~~~~~-----~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~l~-~~~  142 (597)
T 3oja_B           73 SFRQVELLNLNDL-QIEEIDTYA-----FAYAHTIQKLYMGFN-AIRYLPPHVF-QNVPLLTVLVLERN-DLSSLP-RGI  142 (597)
T ss_dssp             HCCCCSEEECTTS-CCCEECTTT-----TTTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCCCC-TTT
T ss_pred             cCCCCcEEECCCC-CCCCCChHH-----hcCCCCCCEEECCCC-cCCCCCHHHH-cCCCCCCEEEeeCC-CCCCCC-HHH
Confidence            5566666666663 343321111     123455666666554 3332111111 13555555555554 232110 011


Q ss_pred             HHcCCcCCEEeccCC
Q 026356          126 VKNCKHIIDLNLSGC  140 (240)
Q Consensus       126 ~~~~~~L~~L~l~~c  140 (240)
                      ...+++|+.|++++|
T Consensus       143 ~~~l~~L~~L~Ls~N  157 (597)
T 3oja_B          143 FHNTPKLTTLSMSNN  157 (597)
T ss_dssp             TTTCTTCCEEECCSS
T ss_pred             hccCCCCCEEEeeCC
Confidence            123445555555555

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.41  E-value=7e-09  Score=93.32  Aligned_cols=16  Identities=6%  Similarity=0.094  Sum_probs=9.7

Q ss_pred             CccceeecccCCCCCc
Q 026356          193 IRFFQAVQINSSNGGD  208 (240)
Q Consensus       193 ~~~L~~l~l~~~~~~~  208 (240)
                      ++.|+.++++.+.+..
T Consensus       300 l~~L~~L~Ls~N~l~~  315 (597)
T 3oja_B          300 IPTLKVLDLSHNHLLH  315 (597)
T ss_dssp             CTTCCEEECCSSCCCC
T ss_pred             CCCCcEEECCCCCCCc
Confidence            5566666666665553

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.41  E-value=1e-08  Score=85.32  Aligned_cols=127  Identities=14%  Similarity=0.169  Sum_probs=63.6

Q ss_pred             eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356           24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC  103 (240)
Q Consensus        24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~  103 (240)
                      +.|++++|... ......  +..+++|+.|+++++ .+...+...-   ....+++|+.|+++++ .++.-..    ...
T Consensus       124 ~~L~l~~n~l~-~~~~~~--~~~l~~L~~L~l~~n-~l~~~~~~~~---~~~~l~~L~~L~l~~n-~l~~l~~----~~~  191 (330)
T 1xku_A          124 QELRVHENEIT-KVRKSV--FNGLNQMIVVELGTN-PLKSSGIENG---AFQGMKKLSYIRIADT-NITTIPQ----GLP  191 (330)
T ss_dssp             CEEECCSSCCC-BBCHHH--HTTCTTCCEEECCSS-CCCGGGBCTT---GGGGCTTCCEEECCSS-CCCSCCS----SCC
T ss_pred             cEEECCCCccc-ccCHhH--hcCCccccEEECCCC-cCCccCcChh---hccCCCCcCEEECCCC-ccccCCc----ccc
Confidence            34888877632 211122  236788888888873 4543211100   0123467777777774 4432100    112


Q ss_pred             CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCC
Q 026356          104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY  166 (240)
Q Consensus       104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c  166 (240)
                      ++|++|+++++ .+++.....+ ..+++|+.|+++++ .+++.....+ ..+++|+.|++++|
T Consensus       192 ~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~N  250 (330)
T 1xku_A          192 PSLTELHLDGN-KITKVDAASL-KGLNNLAKLGLSFN-SISAVDNGSL-ANTPHLRELHLNNN  250 (330)
T ss_dssp             TTCSEEECTTS-CCCEECTGGG-TTCTTCCEEECCSS-CCCEECTTTG-GGSTTCCEEECCSS
T ss_pred             ccCCEEECCCC-cCCccCHHHh-cCCCCCCEEECCCC-cCceeChhhc-cCCCCCCEEECCCC
Confidence            56677777665 3433221112 34566666766666 4543222122 23566666666664

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.40  E-value=1.1e-07  Score=82.90  Aligned_cols=169  Identities=12%  Similarity=0.113  Sum_probs=105.5

Q ss_pred             eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356           24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC  103 (240)
Q Consensus        24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~  103 (240)
                      +.|+++++...+-   .  .+..+++|++|+++++ .+++..        ...+++|++|+++++ .++...   + ..+
T Consensus        45 ~~L~Ls~n~l~~~---~--~l~~l~~L~~L~Ls~n-~l~~~~--------~~~l~~L~~L~Ls~N-~l~~~~---~-~~l  105 (457)
T 3bz5_A           45 TSLDCHNSSITDM---T--GIEKLTGLTKLICTSN-NITTLD--------LSQNTNLTYLACDSN-KLTNLD---V-TPL  105 (457)
T ss_dssp             CEEECCSSCCCCC---T--TGGGCTTCSEEECCSS-CCSCCC--------CTTCTTCSEEECCSS-CCSCCC---C-TTC
T ss_pred             CEEEccCCCcccC---h--hhcccCCCCEEEccCC-cCCeEc--------cccCCCCCEEECcCC-CCceee---c-CCC
Confidence            4499998874332   2  2457899999999984 566531        245688999999985 565532   2 358


Q ss_pred             CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChh
Q 026356          104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNIL  183 (240)
Q Consensus       104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~  183 (240)
                      ++|++|+++++ .++...    ...+++|+.|+++++ .++...    ...+++|+.|++++|..++...+.     ..+
T Consensus       106 ~~L~~L~L~~N-~l~~l~----~~~l~~L~~L~l~~N-~l~~l~----l~~l~~L~~L~l~~n~~~~~~~~~-----~l~  170 (457)
T 3bz5_A          106 TKLTYLNCDTN-KLTKLD----VSQNPLLTYLNCARN-TLTEID----VSHNTQLTELDCHLNKKITKLDVT-----PQT  170 (457)
T ss_dssp             TTCCEEECCSS-CCSCCC----CTTCTTCCEEECTTS-CCSCCC----CTTCTTCCEEECTTCSCCCCCCCT-----TCT
T ss_pred             CcCCEEECCCC-cCCeec----CCCCCcCCEEECCCC-ccceec----cccCCcCCEEECCCCCcccccccc-----cCC
Confidence            88999999887 454421    346788888888888 666532    234777888888876444432110     000


Q ss_pred             hhh----------HHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356          184 LMS----------EFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  233 (240)
Q Consensus       184 ~l~----------~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  233 (240)
                      .++          .+.+.+++.|+.++++.+.+... .    +  ..+++|+.|+++++.
T Consensus       171 ~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~-~----l--~~l~~L~~L~Ls~N~  223 (457)
T 3bz5_A          171 QLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKL-D----L--NQNIQLTFLDCSSNK  223 (457)
T ss_dssp             TCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCC-C----C--TTCTTCSEEECCSSC
T ss_pred             cCCEEECCCCccceeccccCCCCCEEECcCCcCCee-c----c--ccCCCCCEEECcCCc
Confidence            011          12234556677777776666654 1    2  466777777776654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.40  E-value=1.4e-08  Score=81.28  Aligned_cols=157  Identities=11%  Similarity=0.147  Sum_probs=84.9

Q ss_pred             CCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHH
Q 026356           48 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK  127 (240)
Q Consensus        48 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~  127 (240)
                      ++++.|++++ +.+.......     ...+++|++|+++++ .++...-..+ ..+++|++|+++++ .++.... ....
T Consensus        35 ~~l~~L~L~~-n~l~~~~~~~-----~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~-~~~~  104 (251)
T 3m19_A           35 ADTEKLDLQS-TGLATLSDAT-----FRGLTKLTWLNLDYN-QLQTLSAGVF-DDLTELGTLGLANN-QLASLPL-GVFD  104 (251)
T ss_dssp             TTCCEEECTT-SCCCCCCTTT-----TTTCTTCCEEECTTS-CCCCCCTTTT-TTCTTCCEEECTTS-CCCCCCT-TTTT
T ss_pred             CCCCEEEccC-CCcCccCHhH-----hcCcccCCEEECCCC-cCCccCHhHh-ccCCcCCEEECCCC-cccccCh-hHhc
Confidence            4677777777 3444322211     234577777777774 5543221111 24677777777766 4442111 1123


Q ss_pred             cCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCC
Q 026356          128 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGG  207 (240)
Q Consensus       128 ~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~  207 (240)
                      .+++|+.|+++++ .++..... ....+++|+.|+++++ .++..             ..-.+.+++.|+.++++.+.+.
T Consensus       105 ~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~-------------~~~~~~~l~~L~~L~L~~N~l~  168 (251)
T 3m19_A          105 HLTQLDKLYLGGN-QLKSLPSG-VFDRLTKLKELRLNTN-QLQSI-------------PAGAFDKLTNLQTLSLSTNQLQ  168 (251)
T ss_dssp             TCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCCC-------------CTTTTTTCTTCCEEECCSSCCS
T ss_pred             ccCCCCEEEcCCC-cCCCcChh-HhccCCcccEEECcCC-cCCcc-------------CHHHcCcCcCCCEEECCCCcCC
Confidence            5677777777777 56532111 1134677777777774 45421             0002345667777777777666


Q ss_pred             chhHHHHHHHhhcccccchhhhhhhhh
Q 026356          208 DHLAFAYIIETNTYKHGKEKHIIETIK  234 (240)
Q Consensus       208 ~~~~~~~~~~~~~~~~L~~L~l~~c~~  234 (240)
                      ....  ..+  ..+++|+.|++.+++-
T Consensus       169 ~~~~--~~~--~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          169 SVPH--GAF--DRLGKLQTITLFGNQF  191 (251)
T ss_dssp             CCCT--TTT--TTCTTCCEEECCSCCB
T ss_pred             ccCH--HHH--hCCCCCCEEEeeCCce
Confidence            4421  122  4567777777766554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.40  E-value=2.9e-08  Score=77.06  Aligned_cols=36  Identities=19%  Similarity=0.263  Sum_probs=15.8

Q ss_pred             cCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccC
Q 026356          128 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR  165 (240)
Q Consensus       128 ~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~  165 (240)
                      .+++|+.|+++++ .++..... ....+++|+.|++++
T Consensus        98 ~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~  133 (208)
T 2o6s_A           98 KLTQLKELALNTN-QLQSLPDG-VFDKLTQLKDLRLYQ  133 (208)
T ss_dssp             TCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCS
T ss_pred             CccCCCEEEcCCC-cCcccCHh-HhccCCcCCEEECCC
Confidence            3455555555555 34321111 112345555555555

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.38  E-value=5.7e-08  Score=73.44  Aligned_cols=139  Identities=15%  Similarity=0.185  Sum_probs=85.7

Q ss_pred             hcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHH
Q 026356           45 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH  124 (240)
Q Consensus        45 ~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~  124 (240)
                      ..+++|+.|+++++ .++..  ..+..    ..++|+.|+++++ .+++-  ..+ ..+++|++|+++++ .++... ..
T Consensus        16 ~~~~~L~~L~l~~n-~l~~i--~~~~~----~~~~L~~L~Ls~N-~l~~~--~~l-~~l~~L~~L~Ls~N-~l~~~~-~~   82 (176)
T 1a9n_A           16 TNAVRDRELDLRGY-KIPVI--ENLGA----TLDQFDAIDFSDN-EIRKL--DGF-PLLRRLKTLLVNNN-RICRIG-EG   82 (176)
T ss_dssp             ECTTSCEEEECTTS-CCCSC--CCGGG----GTTCCSEEECCSS-CCCEE--CCC-CCCSSCCEEECCSS-CCCEEC-SC
T ss_pred             CCcCCceEEEeeCC-CCchh--HHhhh----cCCCCCEEECCCC-CCCcc--ccc-ccCCCCCEEECCCC-cccccC-cc
Confidence            36778999999984 56532  22222    2258999999995 66652  222 24788899999887 454321 12


Q ss_pred             HHHcCCcCCEEeccCCCCCCHHHH-HHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccC
Q 026356          125 LVKNCKHIIDLNLSGCKNLLDKSL-QLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINS  203 (240)
Q Consensus       125 l~~~~~~L~~L~l~~c~~ltd~~l-~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~  203 (240)
                      +...+++|+.|+++++ .+++-.. ..+ ..+++|+.|+++++ .+++..         . .+...+..++.|+.++++.
T Consensus        83 ~~~~l~~L~~L~L~~N-~i~~~~~~~~l-~~l~~L~~L~l~~N-~i~~~~---------~-~~~~~~~~l~~L~~Ld~~~  149 (176)
T 1a9n_A           83 LDQALPDLTELILTNN-SLVELGDLDPL-ASLKSLTYLCILRN-PVTNKK---------H-YRLYVIYKVPQVRVLDFQK  149 (176)
T ss_dssp             HHHHCTTCCEEECCSC-CCCCGGGGGGG-GGCTTCCEEECCSS-GGGGST---------T-HHHHHHHHCTTCSEETTEE
T ss_pred             hhhcCCCCCEEECCCC-cCCcchhhHhh-hcCCCCCEEEecCC-CCCCcH---------h-HHHHHHHHCCccceeCCCc
Confidence            2356788999999988 6764321 222 35888999999885 443310         0 1111345577788888876


Q ss_pred             CCCCch
Q 026356          204 SNGGDH  209 (240)
Q Consensus       204 ~~~~~~  209 (240)
                      +...+.
T Consensus       150 n~~~~~  155 (176)
T 1a9n_A          150 VKLKER  155 (176)
T ss_dssp             CCHHHH
T ss_pred             CCHHHH
Confidence            665443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.38  E-value=2.5e-10  Score=94.70  Aligned_cols=187  Identities=9%  Similarity=0.078  Sum_probs=107.5

Q ss_pred             EeccCCCCCCh-HHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCC
Q 026356           26 IDLREMNNAGN-RLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCP  104 (240)
Q Consensus        26 L~l~~~~~~~~-~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~  104 (240)
                      |+++++...+. ....  .+..+++|++|++++++.+.+..-..+     ..+++|++|+++++ .++...-..+. .++
T Consensus        55 L~L~~~~l~~~~~~~~--~l~~l~~L~~L~L~~~n~l~~~~p~~l-----~~l~~L~~L~Ls~n-~l~~~~p~~~~-~l~  125 (313)
T 1ogq_A           55 LDLSGLNLPKPYPIPS--SLANLPYLNFLYIGGINNLVGPIPPAI-----AKLTQLHYLYITHT-NVSGAIPDFLS-QIK  125 (313)
T ss_dssp             EEEECCCCSSCEECCG--GGGGCTTCSEEEEEEETTEESCCCGGG-----GGCTTCSEEEEEEE-CCEEECCGGGG-GCT
T ss_pred             EECCCCCccCCcccCh--hHhCCCCCCeeeCCCCCcccccCChhH-----hcCCCCCEEECcCC-eeCCcCCHHHh-CCC
Confidence            88988874320 1112  234889999999985344543222222     34588999999885 55422222222 488


Q ss_pred             CCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCC-CCcEEeccCCCCCCHHHHHHHHHhChh
Q 026356          105 ELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQ-ELESLNLTRYVNMILLGLFYIWSNNIL  183 (240)
Q Consensus       105 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~-~L~~L~l~~c~~it~~~~~~l~~~~~~  183 (240)
                      +|++|+++++ .++.... .....+++|++|+++++ .++......+. .++ +|+.|+++++ .++...-..+..-  .
T Consensus       126 ~L~~L~Ls~N-~l~~~~p-~~~~~l~~L~~L~L~~N-~l~~~~p~~l~-~l~~~L~~L~L~~N-~l~~~~~~~~~~l--~  198 (313)
T 1ogq_A          126 TLVTLDFSYN-ALSGTLP-PSISSLPNLVGITFDGN-RISGAIPDSYG-SFSKLFTSMTISRN-RLTGKIPPTFANL--N  198 (313)
T ss_dssp             TCCEEECCSS-EEESCCC-GGGGGCTTCCEEECCSS-CCEEECCGGGG-CCCTTCCEEECCSS-EEEEECCGGGGGC--C
T ss_pred             CCCEEeCCCC-ccCCcCC-hHHhcCCCCCeEECcCC-cccCcCCHHHh-hhhhcCcEEECcCC-eeeccCChHHhCC--c
Confidence            8999999877 3432111 11246788999999988 66532222232 344 7888888875 4432111111100  0


Q ss_pred             hhhH-------------HHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhh
Q 026356          184 LMSE-------------FIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK  234 (240)
Q Consensus       184 ~l~~-------------l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  234 (240)
                       ++.             -.+.+++.|+.++++.+.+......   +  ..+++|++|+++++.-
T Consensus       199 -L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~--~~l~~L~~L~Ls~N~l  256 (313)
T 1ogq_A          199 -LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK---V--GLSKNLNGLDLRNNRI  256 (313)
T ss_dssp             -CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG---C--CCCTTCCEEECCSSCC
T ss_pred             -ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc---c--cccCCCCEEECcCCcc
Confidence             111             1345667788888887777644221   2  5678888888887754

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.38  E-value=1.8e-08  Score=88.56  Aligned_cols=127  Identities=10%  Similarity=0.082  Sum_probs=61.7

Q ss_pred             CCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCC
Q 026356           78 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE  157 (240)
Q Consensus        78 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~  157 (240)
                      ++|+.|+++++ .++......+...+++|+.|++++| .++...  .. ..+++|+.|++++| .++.....  ...+++
T Consensus       144 ~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~--~~-~~l~~L~~L~Ls~N-~l~~~~~~--~~~l~~  215 (487)
T 3oja_A          144 SRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN-FIYDVK--GQ-VVFAKLKTLDLSSN-KLAFMGPE--FQSAAG  215 (487)
T ss_dssp             SSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS-CCCEEE--CC-CCCTTCCEEECCSS-CCCEECGG--GGGGTT
T ss_pred             CCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCC-cccccc--cc-ccCCCCCEEECCCC-CCCCCCHh--HcCCCC
Confidence            45555555553 4443322333333555555555554 232210  00 12455555555555 44431111  123455


Q ss_pred             CcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhh
Q 026356          158 LESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHII  230 (240)
Q Consensus       158 L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  230 (240)
                      |+.|+++++ .++.     +    +.     .+..++.|+.++++.+.+... .+...+  ..++.|+.+.+.
T Consensus       216 L~~L~Ls~N-~l~~-----l----p~-----~l~~l~~L~~L~l~~N~l~c~-~~~~~~--~~l~~L~~l~~~  270 (487)
T 3oja_A          216 VTWISLRNN-KLVL-----I----EK-----ALRFSQNLEHFDLRGNGFHCG-TLRDFF--SKNQRVQTVAKQ  270 (487)
T ss_dssp             CSEEECTTS-CCCE-----E----CT-----TCCCCTTCCEEECTTCCBCHH-HHHHHH--TTCHHHHHHHHH
T ss_pred             ccEEEecCC-cCcc-----c----ch-----hhccCCCCCEEEcCCCCCcCc-chHHHH--HhCCCCcEEecc
Confidence            666666553 3331     0    10     234556777888877777643 344445  567777777775

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.37  E-value=1.5e-07  Score=82.94  Aligned_cols=161  Identities=11%  Similarity=0.117  Sum_probs=104.6

Q ss_pred             eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHH-HHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhc
Q 026356           24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDR-HLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST  102 (240)
Q Consensus        24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~-~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~  102 (240)
                      +.|++++|...+ .....  +..+++|+.|+++++ .+++. .+...    ...+++|+.|+++++ .++...-......
T Consensus       327 ~~L~Ls~n~l~~-~~~~~--~~~l~~L~~L~L~~N-~l~~l~~~~~~----~~~l~~L~~L~Ls~N-~l~~~l~~~~~~~  397 (520)
T 2z7x_B          327 LHLDFSNNLLTD-TVFEN--CGHLTELETLILQMN-QLKELSKIAEM----TTQMKSLQQLDISQN-SVSYDEKKGDCSW  397 (520)
T ss_dssp             CEEECCSSCCCT-TTTTT--CCCCSSCCEEECCSS-CCCBHHHHHHH----HTTCTTCCEEECCSS-CCBCCGGGCSCCC
T ss_pred             cEEEeECCccCh-hhhhh--hccCCCCCEEEccCC-ccCccccchHH----HhhCCCCCEEECCCC-cCCcccccchhcc
Confidence            349999987432 22222  348899999999994 57652 22211    245699999999996 6554211111235


Q ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHcC-CcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhC
Q 026356          103 CPELKVFSIYWNVRVTDIGIQHLVKNC-KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNN  181 (240)
Q Consensus       103 ~~~L~~L~l~~~~~l~~~~~~~l~~~~-~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~  181 (240)
                      +++|++|++++| .+++...    ... ++|+.|++++| .++.- -..+. .+++|+.|++++| .++.     +... 
T Consensus       398 l~~L~~L~Ls~N-~l~~~~~----~~l~~~L~~L~Ls~N-~l~~i-p~~~~-~l~~L~~L~L~~N-~l~~-----l~~~-  462 (520)
T 2z7x_B          398 TKSLLSLNMSSN-ILTDTIF----RCLPPRIKVLDLHSN-KIKSI-PKQVV-KLEALQELNVASN-QLKS-----VPDG-  462 (520)
T ss_dssp             CTTCCEEECCSS-CCCGGGG----GSCCTTCCEEECCSS-CCCCC-CGGGG-GCTTCCEEECCSS-CCCC-----CCTT-
T ss_pred             CccCCEEECcCC-CCCcchh----hhhcccCCEEECCCC-ccccc-chhhh-cCCCCCEEECCCC-cCCc-----cCHH-
Confidence            789999999988 5654322    233 69999999999 78721 11233 6899999999996 6653     1100 


Q ss_pred             hhhhhHHHhcCCccceeecccCCCCCchhHHHHH
Q 026356          182 ILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYI  215 (240)
Q Consensus       182 ~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~  215 (240)
                             .+..++.|+.++++.+.+........+
T Consensus       463 -------~~~~l~~L~~L~l~~N~~~c~c~~~~~  489 (520)
T 2z7x_B          463 -------IFDRLTSLQKIWLHTNPWDCSCPRIDY  489 (520)
T ss_dssp             -------TTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred             -------HhccCCcccEEECcCCCCcccCCchHH
Confidence                   246678899999988887754343333

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.34  E-value=3.8e-09  Score=86.65  Aligned_cols=152  Identities=19%  Similarity=0.307  Sum_probs=84.4

Q ss_pred             eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356           24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC  103 (240)
Q Consensus        24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~  103 (240)
                      +.|++++|.... ....  .+..+++|+.|++++ +.++....       ...+++|+.|+++++ .++.  +......+
T Consensus        34 ~~L~L~~N~l~~-~~~~--~~~~l~~L~~L~L~~-n~l~~~~~-------~~~l~~L~~L~Ls~N-~l~~--l~~~~~~l   99 (290)
T 1p9a_G           34 TILHLSENLLYT-FSLA--TLMPYTRLTQLNLDR-AELTKLQV-------DGTLPVLGTLDLSHN-QLQS--LPLLGQTL   99 (290)
T ss_dssp             CEEECTTSCCSE-EEGG--GGTTCTTCCEEECTT-SCCCEEEC-------CSCCTTCCEEECCSS-CCSS--CCCCTTTC
T ss_pred             CEEEcCCCcCCc-cCHH--HhhcCCCCCEEECCC-CccCcccC-------CCCCCcCCEEECCCC-cCCc--CchhhccC
Confidence            348888887322 1111  234678888888888 44554211       134578888888884 5542  11112356


Q ss_pred             CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChh
Q 026356          104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNIL  183 (240)
Q Consensus       104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~  183 (240)
                      ++|++|+++++ .++.... .....+++|+.|+++++ .++..... ....+++|+.|+++++ .++..     .     
T Consensus       100 ~~L~~L~l~~N-~l~~l~~-~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~l-----~-----  164 (290)
T 1p9a_G          100 PALTVLDVSFN-RLTSLPL-GALRGLGELQELYLKGN-ELKTLPPG-LLTPTPKLEKLSLANN-NLTEL-----P-----  164 (290)
T ss_dssp             TTCCEEECCSS-CCCCCCS-STTTTCTTCCEEECTTS-CCCCCCTT-TTTTCTTCCEEECTTS-CCSCC-----C-----
T ss_pred             CCCCEEECCCC-cCcccCH-HHHcCCCCCCEEECCCC-CCCccChh-hcccccCCCEEECCCC-cCCcc-----C-----
Confidence            77888888876 4432111 11235678888888887 56532111 1234677888888874 45421     0     


Q ss_pred             hhhHHHhcCCccceeecccCCCCC
Q 026356          184 LMSEFIYHGIRFFQAVQINSSNGG  207 (240)
Q Consensus       184 ~l~~l~~~~~~~L~~l~l~~~~~~  207 (240)
                         .-.+.+++.|+.++++.+.+.
T Consensus       165 ---~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          165 ---AGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             ---TTTTTTCTTCCEEECCSSCCC
T ss_pred             ---HHHhcCcCCCCEEECCCCcCC
Confidence               002244556666666655554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.34  E-value=4.6e-08  Score=87.24  Aligned_cols=160  Identities=12%  Similarity=0.123  Sum_probs=82.1

Q ss_pred             cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHH-HHHHHHhcCCCCCEEEecCCCCCCHHHHHH
Q 026356           46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDK-GIEIISSTCPELKVFSIYWNVRVTDIGIQH  124 (240)
Q Consensus        46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~-~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~  124 (240)
                      .+++|++|++++ +.+.+.....     ...+++|+.|+++++ .++.- .+......+++|++|+++++ .++...-..
T Consensus       351 ~l~~L~~L~l~~-n~l~~~~~~~-----~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~  422 (562)
T 3a79_B          351 SPSSFTFLNFTQ-NVFTDSVFQG-----CSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLN-SLNSHAYDR  422 (562)
T ss_dssp             SCCCCCEEECCS-SCCCTTTTTT-----CCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTS-CCBSCCSSC
T ss_pred             CCCCceEEECCC-Cccccchhhh-----hcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCC-cCCCccChh
Confidence            455666666666 3444321111     134466666666664 44431 11111224666666666665 232211011


Q ss_pred             HHHcCCcCCEEeccCCCCCCHHHHHHHHHhC-CCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccC
Q 026356          125 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNY-QELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINS  203 (240)
Q Consensus       125 l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~-~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~  203 (240)
                      ....+++|+.|++++| .+++...    ... ++|+.|+++++ .++.     +    +.     ...+++.|+.++++.
T Consensus       423 ~~~~l~~L~~L~l~~n-~l~~~~~----~~l~~~L~~L~L~~N-~l~~-----i----p~-----~~~~l~~L~~L~L~~  482 (562)
T 3a79_B          423 TCAWAESILVLNLSSN-MLTGSVF----RCLPPKVKVLDLHNN-RIMS-----I----PK-----DVTHLQALQELNVAS  482 (562)
T ss_dssp             CCCCCTTCCEEECCSS-CCCGGGG----SSCCTTCSEEECCSS-CCCC-----C----CT-----TTTSSCCCSEEECCS
T ss_pred             hhcCcccCCEEECCCC-CCCcchh----hhhcCcCCEEECCCC-cCcc-----c----Ch-----hhcCCCCCCEEECCC
Confidence            1224456666666666 5553222    122 46777777764 4441     0    10     123667788888887


Q ss_pred             CCCCchhHHHHHHHhhcccccchhhhhhhhhhhc
Q 026356          204 SNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQ  237 (240)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~d  237 (240)
                      +.+..... . .+  ..+++|+.|++.++|-.+|
T Consensus       483 N~l~~l~~-~-~~--~~l~~L~~L~l~~N~~~c~  512 (562)
T 3a79_B          483 NQLKSVPD-G-VF--DRLTSLQYIWLHDNPWDCT  512 (562)
T ss_dssp             SCCCCCCT-T-ST--TTCTTCCCEECCSCCBCCC
T ss_pred             CCCCCCCH-H-HH--hcCCCCCEEEecCCCcCCC
Confidence            77764311 1 13  5678888888877665443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.32  E-value=8.5e-10  Score=91.42  Aligned_cols=190  Identities=13%  Similarity=0.090  Sum_probs=94.9

Q ss_pred             eEEeccC-CCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhc
Q 026356           24 KVIDLRE-MNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST  102 (240)
Q Consensus        24 ~~L~l~~-~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~  102 (240)
                      +.|++++ +...+ .....  +..+++|++|++++ +.+.......+     ..+++|++|+++++ .++...-..+. .
T Consensus        79 ~~L~L~~~n~l~~-~~p~~--l~~l~~L~~L~Ls~-n~l~~~~p~~~-----~~l~~L~~L~Ls~N-~l~~~~p~~~~-~  147 (313)
T 1ogq_A           79 NFLYIGGINNLVG-PIPPA--IAKLTQLHYLYITH-TNVSGAIPDFL-----SQIKTLVTLDFSYN-ALSGTLPPSIS-S  147 (313)
T ss_dssp             SEEEEEEETTEES-CCCGG--GGGCTTCSEEEEEE-ECCEEECCGGG-----GGCTTCCEEECCSS-EEESCCCGGGG-G
T ss_pred             CeeeCCCCCcccc-cCChh--HhcCCCCCEEECcC-CeeCCcCCHHH-----hCCCCCCEEeCCCC-ccCCcCChHHh-c
Confidence            3488875 44221 11111  24778888888887 34542211111     23477888888874 44421111222 4


Q ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHcCC-cCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhC
Q 026356          103 CPELKVFSIYWNVRVTDIGIQHLVKNCK-HIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNN  181 (240)
Q Consensus       103 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~-~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~  181 (240)
                      +++|++|+++++ .++...-..+ ..++ +|+.|+++++ .++......+. .++ |+.|+++++ .++......+. . 
T Consensus       148 l~~L~~L~L~~N-~l~~~~p~~l-~~l~~~L~~L~L~~N-~l~~~~~~~~~-~l~-L~~L~Ls~N-~l~~~~~~~~~-~-  219 (313)
T 1ogq_A          148 LPNLVGITFDGN-RISGAIPDSY-GSFSKLFTSMTISRN-RLTGKIPPTFA-NLN-LAFVDLSRN-MLEGDASVLFG-S-  219 (313)
T ss_dssp             CTTCCEEECCSS-CCEEECCGGG-GCCCTTCCEEECCSS-EEEEECCGGGG-GCC-CSEEECCSS-EEEECCGGGCC-T-
T ss_pred             CCCCCeEECcCC-cccCcCCHHH-hhhhhcCcEEECcCC-eeeccCChHHh-CCc-ccEEECcCC-cccCcCCHHHh-c-
Confidence            777778877766 3432111112 2333 6667776666 44321111111 122 555555543 22211000000 0 


Q ss_pred             hhhhhHH------------HhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhhhh
Q 026356          182 ILLMSEF------------IYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTG  236 (240)
Q Consensus       182 ~~~l~~l------------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~  236 (240)
                      ...++.+            .+..++.|+.++++.+.+.....  ..+  ..+++|+.|+++++.-.|
T Consensus       220 l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p--~~l--~~l~~L~~L~Ls~N~l~~  282 (313)
T 1ogq_A          220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP--QGL--TQLKFLHSLNVSFNNLCG  282 (313)
T ss_dssp             TSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCC--GGG--GGCTTCCEEECCSSEEEE
T ss_pred             CCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCC--hHH--hcCcCCCEEECcCCcccc
Confidence            0001110            23567889999999888864421  123  578999999999886543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.31  E-value=1.5e-08  Score=92.14  Aligned_cols=45  Identities=2%  Similarity=-0.105  Sum_probs=30.1

Q ss_pred             hcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhhhhc
Q 026356          190 YHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQ  237 (240)
Q Consensus       190 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~d  237 (240)
                      +.+++.|+.++++.+.+.... ...+.  ..+++|+.|++.++|-..|
T Consensus       580 ~~~l~~L~~L~L~~N~l~~~~-~~~~~--~~~~~L~~l~l~~N~~~c~  624 (680)
T 1ziw_A          580 FNNQVSLKSLNLQKNLITSVE-KKVFG--PAFRNLTELDMRFNPFDCT  624 (680)
T ss_dssp             TTTCTTCCEEECTTSCCCBCC-HHHHH--HHHTTCSEEECTTCCCCBC
T ss_pred             hCCCCCCCEEECCCCcCCccC-hhHhc--ccccccCEEEccCCCcccC
Confidence            456778888888888777652 22222  2567888888888775544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.31  E-value=8.6e-08  Score=83.54  Aligned_cols=169  Identities=13%  Similarity=0.107  Sum_probs=103.8

Q ss_pred             CeEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhc
Q 026356           23 PKVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST  102 (240)
Q Consensus        23 ~~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~  102 (240)
                      .+.|++++|...+-      .+..+++|++|+++++ .++...        ...+++|++|+++++ .++...    ...
T Consensus        66 L~~L~Ls~n~l~~~------~~~~l~~L~~L~Ls~N-~l~~~~--------~~~l~~L~~L~L~~N-~l~~l~----~~~  125 (457)
T 3bz5_A           66 LTKLICTSNNITTL------DLSQNTNLTYLACDSN-KLTNLD--------VTPLTKLTYLNCDTN-KLTKLD----VSQ  125 (457)
T ss_dssp             CSEEECCSSCCSCC------CCTTCTTCSEEECCSS-CCSCCC--------CTTCTTCCEEECCSS-CCSCCC----CTT
T ss_pred             CCEEEccCCcCCeE------ccccCCCCCEEECcCC-CCceee--------cCCCCcCCEEECCCC-cCCeec----CCC
Confidence            34488888874331      2347788888888884 465531        245688888888885 555421    234


Q ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhCh
Q 026356          103 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNI  182 (240)
Q Consensus       103 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~  182 (240)
                      +++|++|+++++ .++...    ...+++|+.|++++|..++...    ...+++|+.|+++++ .++...   + ...+
T Consensus       126 l~~L~~L~l~~N-~l~~l~----l~~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n-~l~~l~---l-~~l~  191 (457)
T 3bz5_A          126 NPLLTYLNCARN-TLTEID----VSHNTQLTELDCHLNKKITKLD----VTPQTQLTTLDCSFN-KITELD---V-SQNK  191 (457)
T ss_dssp             CTTCCEEECTTS-CCSCCC----CTTCTTCCEEECTTCSCCCCCC----CTTCTTCCEEECCSS-CCCCCC---C-TTCT
T ss_pred             CCcCCEEECCCC-ccceec----cccCCcCCEEECCCCCcccccc----cccCCcCCEEECCCC-ccceec---c-ccCC
Confidence            777888888776 444321    2356677777777774444321    123566777777664 444321   1 1111


Q ss_pred             hhhhH----------HHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356          183 LLMSE----------FIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  233 (240)
Q Consensus       183 ~~l~~----------l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  233 (240)
                       .++.          +.+..++.|+.++++.+.+... .    +  ..+++|+.|++.++.
T Consensus       192 -~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~i-p----~--~~l~~L~~L~l~~N~  244 (457)
T 3bz5_A          192 -LLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEI-D----V--TPLTQLTYFDCSVNP  244 (457)
T ss_dssp             -TCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC-C----C--TTCTTCSEEECCSSC
T ss_pred             -CCCEEECcCCcCCeeccccCCCCCEEECcCCccccc-C----c--cccCCCCEEEeeCCc
Confidence             1222          2346678899999999988774 2    3  678999999998765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.30  E-value=1.7e-07  Score=87.73  Aligned_cols=86  Identities=19%  Similarity=0.228  Sum_probs=41.4

Q ss_pred             CCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCH-H---HHHHHH---HcCCcCCEEeccCCCCCCHHHH
Q 026356           76 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTD-I---GIQHLV---KNCKHIIDLNLSGCKNLLDKSL  148 (240)
Q Consensus        76 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~-~---~~~~l~---~~~~~L~~L~l~~c~~ltd~~l  148 (240)
                      .+++|+.|++++|. +....-..+. .+++|+.|+++++..++. .   .+..+.   ..+++|+.|++++| .++.  +
T Consensus       489 ~L~~L~~L~Ls~N~-l~~~iP~~l~-~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~--i  563 (876)
T 4ecn_A          489 NLKDLTDVELYNCP-NMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEE--F  563 (876)
T ss_dssp             GCTTCCEEEEESCT-TCCSCCGGGG-GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCB--C
T ss_pred             cCCCCCEEECcCCC-CCccChHHHh-CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCc--c
Confidence            34666667766652 2111111122 366666666666532554 1   122221   23346666666666 4541  2


Q ss_pred             HH--HHHhCCCCcEEeccCC
Q 026356          149 QL--IADNYQELESLNLTRY  166 (240)
Q Consensus       149 ~~--l~~~~~~L~~L~l~~c  166 (240)
                      ..  ....+++|+.|+++++
T Consensus       564 p~~~~l~~L~~L~~L~Ls~N  583 (876)
T 4ecn_A          564 PASASLQKMVKLGLLDCVHN  583 (876)
T ss_dssp             CCHHHHTTCTTCCEEECTTS
T ss_pred             CChhhhhcCCCCCEEECCCC
Confidence            11  2234666666666664

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.27  E-value=1.9e-07  Score=75.38  Aligned_cols=142  Identities=17%  Similarity=0.207  Sum_probs=97.1

Q ss_pred             eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356           24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC  103 (240)
Q Consensus        24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~  103 (240)
                      +.|++++|....   +.  .+..+++|+.|+++++ .+++..-       ...+++|+.|+++++ .+++-  ..+..  
T Consensus        44 ~~L~l~~n~i~~---l~--~l~~l~~L~~L~L~~N-~i~~~~~-------l~~l~~L~~L~L~~N-~l~~l--~~~~~--  105 (263)
T 1xeu_A           44 QNFNGDNSNIQS---LA--GMQFFTNLKELHLSHN-QISDLSP-------LKDLTKLEELSVNRN-RLKNL--NGIPS--  105 (263)
T ss_dssp             SEEECTTSCCCC---CT--TGGGCTTCCEEECCSS-CCCCCGG-------GTTCSSCCEEECCSS-CCSCC--TTCCC--
T ss_pred             cEEECcCCCccc---ch--HHhhCCCCCEEECCCC-ccCCChh-------hccCCCCCEEECCCC-ccCCc--Ccccc--
Confidence            349999887432   22  2357899999999994 5665332       245699999999996 66541  12222  


Q ss_pred             CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChh
Q 026356          104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNIL  183 (240)
Q Consensus       104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~  183 (240)
                      ++|++|+++++ .+++.  .. ...+++|+.|+++++ .+++..  .+ ..+++|+.|+++++ .+++.       .   
T Consensus       106 ~~L~~L~L~~N-~l~~~--~~-l~~l~~L~~L~Ls~N-~i~~~~--~l-~~l~~L~~L~L~~N-~i~~~-------~---  166 (263)
T 1xeu_A          106 ACLSRLFLDNN-ELRDT--DS-LIHLKNLEILSIRNN-KLKSIV--ML-GFLSKLEVLDLHGN-EITNT-------G---  166 (263)
T ss_dssp             SSCCEEECCSS-CCSBS--GG-GTTCTTCCEEECTTS-CCCBCG--GG-GGCTTCCEEECTTS-CCCBC-------T---
T ss_pred             CcccEEEccCC-ccCCC--hh-hcCcccccEEECCCC-cCCCCh--HH-ccCCCCCEEECCCC-cCcch-------H---
Confidence            78999999988 56542  22 357889999999999 787642  22 45899999999995 66653       1   


Q ss_pred             hhhHHHhcCCccceeecccCCCCC
Q 026356          184 LMSEFIYHGIRFFQAVQINSSNGG  207 (240)
Q Consensus       184 ~l~~l~~~~~~~L~~l~l~~~~~~  207 (240)
                           .+.+++.|+.++++.+.+.
T Consensus       167 -----~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          167 -----GLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             -----TSTTCCCCCEEEEEEEEEE
T ss_pred             -----HhccCCCCCEEeCCCCccc
Confidence                 2355667777777655443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.27  E-value=1.2e-08  Score=85.00  Aligned_cols=116  Identities=9%  Similarity=0.004  Sum_probs=49.9

Q ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhCh
Q 026356          103 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNI  182 (240)
Q Consensus       103 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~  182 (240)
                      +++|++|+++++ .+++..... ...+++|++|++++| .++.-  ..-...+++|+.|+++++ .+++.+...+.... 
T Consensus       216 l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~l--p~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~-  288 (332)
T 2ft3_A          216 YSKLYRLGLGHN-QIRMIENGS-LSFLPTLRELHLDNN-KLSRV--PAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVG-  288 (332)
T ss_dssp             CTTCSCCBCCSS-CCCCCCTTG-GGGCTTCCEEECCSS-CCCBC--CTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSS-
T ss_pred             CCCCCEEECCCC-cCCcCChhH-hhCCCCCCEEECCCC-cCeec--ChhhhcCccCCEEECCCC-CCCccChhHccccc-
Confidence            455666666554 332211111 134556666666666 45421  110123566666666663 44432221111000 


Q ss_pred             hhhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356          183 LLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  233 (240)
Q Consensus       183 ~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  233 (240)
                            .......++.+++..+.+.........+  ..+++|+.++++++.
T Consensus       289 ------~~~~~~~l~~L~l~~N~~~~~~~~~~~~--~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          289 ------FGVKRAYYNGISLFNNPVPYWEVQPATF--RCVTDRLAIQFGNYK  331 (332)
T ss_dssp             ------CCSSSCCBSEEECCSSSSCGGGSCGGGG--TTBCCSTTEEC----
T ss_pred             ------cccccccccceEeecCcccccccCcccc--cccchhhhhhccccc
Confidence                  0011344666666666554221111223  456777777776653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.23  E-value=8.7e-08  Score=89.65  Aligned_cols=133  Identities=10%  Similarity=0.131  Sum_probs=82.3

Q ss_pred             CeEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcH-H---HHHHHHHHccCCCCCccEEecCCCCCCcHHHHHH
Q 026356           23 PKVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIED-R---HLELLKTKCLGSLQDLESLNLNGCQKISDKGIEI   98 (240)
Q Consensus        23 ~~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~-~---~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~   98 (240)
                      .+.|+|++|...+.-. .  .+.++++|+.|+++++..++. .   .+..+... ...+++|+.|+++++ .++.  +..
T Consensus       493 L~~L~Ls~N~l~~~iP-~--~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~-~~~l~~L~~L~Ls~N-~L~~--ip~  565 (876)
T 4ecn_A          493 LTDVELYNCPNMTQLP-D--FLYDLPELQSLNIACNRGISAAQLKADWTRLADD-EDTGPKIQIFYMGYN-NLEE--FPA  565 (876)
T ss_dssp             CCEEEEESCTTCCSCC-G--GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHC-TTTTTTCCEEECCSS-CCCB--CCC
T ss_pred             CCEEECcCCCCCccCh-H--HHhCCCCCCEEECcCCCCcccccchHHHHhhhhc-ccccCCccEEEeeCC-cCCc--cCC
Confidence            4559999987543211 2  235889999999999543766 2   23333211 245679999999996 6652  211


Q ss_pred             --HHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCC-CcEEeccCCCCCC
Q 026356           99 --ISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE-LESLNLTRYVNMI  170 (240)
Q Consensus        99 --l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~-L~~L~l~~c~~it  170 (240)
                        ....+++|+.|+++++ .++  .+. ....+++|+.|++++| .++.  +..-...+++ |+.|++++| .++
T Consensus       566 ~~~l~~L~~L~~L~Ls~N-~l~--~lp-~~~~L~~L~~L~Ls~N-~l~~--lp~~l~~l~~~L~~L~Ls~N-~L~  632 (876)
T 4ecn_A          566 SASLQKMVKLGLLDCVHN-KVR--HLE-AFGTNVKLTDLKLDYN-QIEE--IPEDFCAFTDQVEGLGFSHN-KLK  632 (876)
T ss_dssp             HHHHTTCTTCCEEECTTS-CCC--BCC-CCCTTSEESEEECCSS-CCSC--CCTTSCEECTTCCEEECCSS-CCC
T ss_pred             hhhhhcCCCCCEEECCCC-Ccc--cch-hhcCCCcceEEECcCC-cccc--chHHHhhccccCCEEECcCC-CCC
Confidence              2235889999999987 455  222 2346678888888888 5651  1111123556 888888875 444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.23  E-value=2.4e-08  Score=81.82  Aligned_cols=153  Identities=16%  Similarity=0.154  Sum_probs=101.0

Q ss_pred             CCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHH
Q 026356           47 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV  126 (240)
Q Consensus        47 ~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~  126 (240)
                      .++++.|++++ +.++......     ...+++|+.|+++++ .++.....   ..+++|++|+++++ .++.  +....
T Consensus        30 ~~~l~~L~L~~-N~l~~~~~~~-----~~~l~~L~~L~L~~n-~l~~~~~~---~~l~~L~~L~Ls~N-~l~~--l~~~~   96 (290)
T 1p9a_G           30 PKDTTILHLSE-NLLYTFSLAT-----LMPYTRLTQLNLDRA-ELTKLQVD---GTLPVLGTLDLSHN-QLQS--LPLLG   96 (290)
T ss_dssp             CTTCCEEECTT-SCCSEEEGGG-----GTTCTTCCEEECTTS-CCCEEECC---SCCTTCCEEECCSS-CCSS--CCCCT
T ss_pred             CCCCCEEEcCC-CcCCccCHHH-----hhcCCCCCEEECCCC-ccCcccCC---CCCCcCCEEECCCC-cCCc--Cchhh
Confidence            36799999999 5565433222     245699999999995 66542211   46889999999987 4541  22223


Q ss_pred             HcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCC
Q 026356          127 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNG  206 (240)
Q Consensus       127 ~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~  206 (240)
                      ..+++|+.|+++++ .++......+ ..+++|+.|+++++ .++..     ..        -.+.+++.|+.++++.+.+
T Consensus        97 ~~l~~L~~L~l~~N-~l~~l~~~~~-~~l~~L~~L~L~~N-~l~~~-----~~--------~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           97 QTLPALTVLDVSFN-RLTSLPLGAL-RGLGELQELYLKGN-ELKTL-----PP--------GLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             TTCTTCCEEECCSS-CCCCCCSSTT-TTCTTCCEEECTTS-CCCCC-----CT--------TTTTTCTTCCEEECTTSCC
T ss_pred             ccCCCCCEEECCCC-cCcccCHHHH-cCCCCCCEEECCCC-CCCcc-----Ch--------hhcccccCCCEEECCCCcC
Confidence            56789999999999 6764321212 35789999999995 55531     00        0345678899999988877


Q ss_pred             CchhHHHHHHHhhcccccchhhhhhh
Q 026356          207 GDHLAFAYIIETNTYKHGKEKHIIET  232 (240)
Q Consensus       207 ~~~~~~~~~~~~~~~~~L~~L~l~~c  232 (240)
                      .....  ..+  ..+++|+.|+++++
T Consensus       161 ~~l~~--~~~--~~l~~L~~L~L~~N  182 (290)
T 1p9a_G          161 TELPA--GLL--NGLENLDTLLLQEN  182 (290)
T ss_dssp             SCCCT--TTT--TTCTTCCEEECCSS
T ss_pred             CccCH--HHh--cCcCCCCEEECCCC
Confidence            75421  122  45678888777654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.23  E-value=5.4e-08  Score=82.74  Aligned_cols=138  Identities=15%  Similarity=0.178  Sum_probs=89.5

Q ss_pred             cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHH
Q 026356           46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL  125 (240)
Q Consensus        46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l  125 (240)
                      .+++++.|+++++ .++......+. .    +++|+.|+++++ .+++.....+ ..+++|++|+++++ .++..... .
T Consensus        43 ~l~~l~~l~l~~~-~l~~l~~~~~~-~----l~~L~~L~L~~n-~i~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~-~  112 (390)
T 3o6n_A           43 TLNNQKIVTFKNS-TMRKLPAALLD-S----FRQVELLNLNDL-QIEEIDTYAF-AYAHTIQKLYMGFN-AIRYLPPH-V  112 (390)
T ss_dssp             GGCCCSEEEEESC-EESEECTHHHH-H----CCCCSEEECTTS-CCCEECTTTT-TTCTTCCEEECCSS-CCCCCCTT-T
T ss_pred             ccCCceEEEecCC-chhhCChhHhc-c----cccCcEEECCCC-cccccChhhc-cCCCCcCEEECCCC-CCCcCCHH-H
Confidence            5688999999984 45443322222 2    389999999996 6654322222 25899999999987 45432222 2


Q ss_pred             HHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCC
Q 026356          126 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSN  205 (240)
Q Consensus       126 ~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~  205 (240)
                      ...+++|++|+++++ .++.... .+...+++|++|+++++ .++...        +.     .+.+++.|+.++++.+.
T Consensus       113 ~~~l~~L~~L~L~~n-~l~~l~~-~~~~~l~~L~~L~L~~n-~l~~~~--------~~-----~~~~l~~L~~L~l~~n~  176 (390)
T 3o6n_A          113 FQNVPLLTVLVLERN-DLSSLPR-GIFHNTPKLTTLSMSNN-NLERIE--------DD-----TFQATTSLQNLQLSSNR  176 (390)
T ss_dssp             TTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCBCC--------TT-----TTSSCTTCCEEECCSSC
T ss_pred             hcCCCCCCEEECCCC-ccCcCCH-HHhcCCCCCcEEECCCC-ccCccC--------hh-----hccCCCCCCEEECCCCc
Confidence            246789999999999 6763221 12245889999999996 554310        10     23566777777777776


Q ss_pred             CCch
Q 026356          206 GGDH  209 (240)
Q Consensus       206 ~~~~  209 (240)
                      +...
T Consensus       177 l~~~  180 (390)
T 3o6n_A          177 LTHV  180 (390)
T ss_dssp             CSBC
T ss_pred             CCcc
Confidence            6654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.22  E-value=1.2e-07  Score=85.87  Aligned_cols=177  Identities=11%  Similarity=0.106  Sum_probs=95.7

Q ss_pred             hhcCCCCceEeccCCCCCcHH-------------HHHHHHHHccC--CCCCccEEecCCCCCCcHHHHHHHHhcCCCCCE
Q 026356           44 IPRYRHVREINLEFAQDIEDR-------------HLELLKTKCLG--SLQDLESLNLNGCQKISDKGIEIISSTCPELKV  108 (240)
Q Consensus        44 ~~~~~~L~~L~l~~c~~i~~~-------------~~~~l~~~~~~--~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~  108 (240)
                      +.++++|++|+++++ .++..             ....+... ..  .+++|++|++++| .+....-..+. .+++|++
T Consensus       202 l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n-~l~~~~p~~l~-~l~~L~~  277 (636)
T 4eco_A          202 VMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNC-PNLTKLPTFLK-ALPEMQL  277 (636)
T ss_dssp             GGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECC-TTCSSCCTTTT-TCSSCCE
T ss_pred             HhcccCCCEEECcCC-ccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCC-cCCccChHHHh-cCCCCCE
Confidence            347788888888884 46652             00111111 13  5678888888886 33221111222 4778888


Q ss_pred             EEecCCCCCCH-HHHHHHH-----HcCCcCCEEeccCCCCCCHHHHHH--HHHhCCCCcEEeccCCCCCC-HHHHHHHHH
Q 026356          109 FSIYWNVRVTD-IGIQHLV-----KNCKHIIDLNLSGCKNLLDKSLQL--IADNYQELESLNLTRYVNMI-LLGLFYIWS  179 (240)
Q Consensus       109 L~l~~~~~l~~-~~~~~l~-----~~~~~L~~L~l~~c~~ltd~~l~~--l~~~~~~L~~L~l~~c~~it-~~~~~~l~~  179 (240)
                      |+++++..++. ..-..+.     ..+++|+.|++++| .++.  +..  ....+++|+.|+++++ .++ .-.  .+  
T Consensus       278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~--ip~~~~l~~l~~L~~L~L~~N-~l~g~ip--~~--  349 (636)
T 4eco_A          278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKT--FPVETSLQKMKKLGMLECLYN-QLEGKLP--AF--  349 (636)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSS--CCCHHHHTTCTTCCEEECCSC-CCEEECC--CC--
T ss_pred             EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCc--cCchhhhccCCCCCEEeCcCC-cCccchh--hh--
Confidence            88887743766 2222222     23478888888888 6662  221  2245778888888875 443 211  00  


Q ss_pred             hChhhhhHH------------HhcCCcc-ceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhhh
Q 026356          180 NNILLMSEF------------IYHGIRF-FQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKT  235 (240)
Q Consensus       180 ~~~~~l~~l------------~~~~~~~-L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~  235 (240)
                      .....++.+            .+.+++. |+.++++.+.+... .  ..+....+++|+.|++.++.-.
T Consensus       350 ~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~l-p--~~~~~~~l~~L~~L~Ls~N~l~  415 (636)
T 4eco_A          350 GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYI-P--NIFDAKSVSVMSAIDFSYNEIG  415 (636)
T ss_dssp             EEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSC-C--SCCCTTCSSCEEEEECCSSCTT
T ss_pred             CCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCccc-c--hhhhhcccCccCEEECcCCcCC
Confidence            011112221            2344555 77888877776632 1  1121123457888888777543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.19  E-value=9.5e-07  Score=66.61  Aligned_cols=128  Identities=16%  Similarity=0.223  Sum_probs=86.7

Q ss_pred             CeEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhc
Q 026356           23 PKVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST  102 (240)
Q Consensus        23 ~~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~  102 (240)
                      .+.|++++|....   +..+. ...++|+.|++++ +.+++.      . ....+++|+.|+++++ .++...- .+...
T Consensus        21 L~~L~l~~n~l~~---i~~~~-~~~~~L~~L~Ls~-N~l~~~------~-~l~~l~~L~~L~Ls~N-~l~~~~~-~~~~~   86 (176)
T 1a9n_A           21 DRELDLRGYKIPV---IENLG-ATLDQFDAIDFSD-NEIRKL------D-GFPLLRRLKTLLVNNN-RICRIGE-GLDQA   86 (176)
T ss_dssp             CEEEECTTSCCCS---CCCGG-GGTTCCSEEECCS-SCCCEE------C-CCCCCSSCCEEECCSS-CCCEECS-CHHHH
T ss_pred             ceEEEeeCCCCch---hHHhh-hcCCCCCEEECCC-CCCCcc------c-ccccCCCCCEEECCCC-cccccCc-chhhc
Confidence            4569999997432   22222 2345999999999 567653      1 2366799999999995 6664211 12235


Q ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHH--HHHHHhCCCCcEEeccCC
Q 026356          103 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSL--QLIADNYQELESLNLTRY  166 (240)
Q Consensus       103 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l--~~l~~~~~~L~~L~l~~c  166 (240)
                      +++|+.|+++++ .+++-........+++|+.|+++++ .+++..-  ..+...+++|+.|+++++
T Consensus        87 l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           87 LPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             CTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             CCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            899999999988 5654221112347899999999999 5654221  123456999999999985

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.17  E-value=5.6e-09  Score=86.98  Aligned_cols=39  Identities=5%  Similarity=-0.141  Sum_probs=22.7

Q ss_pred             cCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356          191 HGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  233 (240)
Q Consensus       191 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  233 (240)
                      .+++.|+.++++.+.+.....  ..+  ..+++|++|+++++.
T Consensus       214 ~~l~~L~~L~L~~N~l~~~~~--~~~--~~l~~L~~L~L~~N~  252 (332)
T 2ft3_A          214 LRYSKLYRLGLGHNQIRMIEN--GSL--SFLPTLRELHLDNNK  252 (332)
T ss_dssp             TTCTTCSCCBCCSSCCCCCCT--TGG--GGCTTCCEEECCSSC
T ss_pred             cCCCCCCEEECCCCcCCcCCh--hHh--hCCCCCCEEECCCCc
Confidence            445567777776666654311  112  456777777777653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.17  E-value=5.8e-08  Score=75.31  Aligned_cols=132  Identities=11%  Similarity=0.087  Sum_probs=72.8

Q ss_pred             CCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCC
Q 026356           78 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE  157 (240)
Q Consensus        78 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~  157 (240)
                      ++|++|+++++ .++...-.. ...+++|++|+++++ .++... ......+++|++|+++++ .++..... ....+++
T Consensus        28 ~~l~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~  101 (208)
T 2o6s_A           28 AQTTYLDLETN-SLKSLPNGV-FDELTSLTQLYLGGN-KLQSLP-NGVFNKLTSLTYLNLSTN-QLQSLPNG-VFDKLTQ  101 (208)
T ss_dssp             TTCSEEECCSS-CCCCCCTTT-TTTCTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTT
T ss_pred             CCCcEEEcCCC-ccCcCChhh-hcccccCcEEECCCC-ccCccC-hhhcCCCCCcCEEECCCC-cCCccCHh-HhcCccC
Confidence            45666666663 443211111 124677777777765 443211 112246788999999888 66632211 1235889


Q ss_pred             CcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356          158 LESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  233 (240)
Q Consensus       158 L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  233 (240)
                      |+.|+++++ .++...        +     -.+.+++.|+.++++.+.+.....  ..+  ..+++|+.|++.+++
T Consensus       102 L~~L~L~~N-~l~~~~--------~-----~~~~~l~~L~~L~l~~N~l~~~~~--~~~--~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A          102 LKELALNTN-QLQSLP--------D-----GVFDKLTQLKDLRLYQNQLKSVPD--GVF--DRLTSLQYIWLHDNP  159 (208)
T ss_dssp             CCEEECCSS-CCCCCC--------T-----TTTTTCTTCCEEECCSSCCSCCCT--TTT--TTCTTCCEEECCSCC
T ss_pred             CCEEEcCCC-cCcccC--------H-----hHhccCCcCCEEECCCCccceeCH--HHh--ccCCCccEEEecCCC
Confidence            999999995 565311        0     023456667777776666554311  112  345666666666544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.17  E-value=3.4e-08  Score=79.98  Aligned_cols=137  Identities=14%  Similarity=0.175  Sum_probs=91.4

Q ss_pred             CCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHH
Q 026356           48 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK  127 (240)
Q Consensus        48 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~  127 (240)
                      ++|++|++++ +.+++.....     ...+++|+.|+++++ .++......+ ..+++|++|+++++ .++...... ..
T Consensus        28 ~~l~~L~ls~-n~l~~~~~~~-----~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~-~~   97 (276)
T 2z62_A           28 FSTKNLDLSF-NPLRHLGSYS-----FFSFPELQVLDLSRC-EIQTIEDGAY-QSLSHLSTLILTGN-PIQSLALGA-FS   97 (276)
T ss_dssp             TTCCEEECTT-CCCCEECTTT-----TTTCTTCSEEECTTC-CCCEECTTTT-TTCTTCCEEECTTC-CCCEECTTT-TT
T ss_pred             CCccEEECCC-CcccccCHhH-----hccccCCcEEECCCC-cCCccCHHHc-cCCcCCCEEECCCC-ccCccChhh-hc
Confidence            4699999999 4566543322     245689999999996 6654222222 34889999999987 454332222 24


Q ss_pred             cCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCC
Q 026356          128 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGG  207 (240)
Q Consensus       128 ~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~  207 (240)
                      .+++|++|+++++ .++......+ ..+++|+.|+++++ .+++..+       +.     .+.+++.|+.++++.+.+.
T Consensus        98 ~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~l-------~~-----~~~~l~~L~~L~Ls~N~l~  162 (276)
T 2z62_A           98 GLSSLQKLVAVET-NLASLENFPI-GHLKTLKELNVAHN-LIQSFKL-------PE-----YFSNLTNLEHLDLSSNKIQ  162 (276)
T ss_dssp             TCTTCCEEECTTS-CCCCSTTCCC-TTCTTCCEEECCSS-CCCCCCC-------CG-----GGGGCTTCCEEECCSSCCC
T ss_pred             CCccccEEECCCC-CccccCchhc-ccCCCCCEEECcCC-ccceecC-------ch-----hhccCCCCCEEECCCCCCC
Confidence            6789999999999 5654222112 35889999999995 5543110       11     3466788999999988887


Q ss_pred             ch
Q 026356          208 DH  209 (240)
Q Consensus       208 ~~  209 (240)
                      ..
T Consensus       163 ~~  164 (276)
T 2z62_A          163 SI  164 (276)
T ss_dssp             EE
T ss_pred             cC
Confidence            64

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.15  E-value=4.8e-09  Score=83.26  Aligned_cols=112  Identities=10%  Similarity=0.024  Sum_probs=71.4

Q ss_pred             CCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHH
Q 026356           48 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK  127 (240)
Q Consensus        48 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~  127 (240)
                      ++|+.|++++ +.++......     ...+++|+.|+++++..++.-.-..+ ..+++|++|++++|..++..... ...
T Consensus        31 ~~l~~L~l~~-n~l~~i~~~~-----~~~l~~L~~L~l~~n~~l~~i~~~~f-~~l~~L~~L~l~~~n~l~~i~~~-~f~  102 (239)
T 2xwt_C           31 PSTQTLKLIE-THLRTIPSHA-----FSNLPNISRIYVSIDVTLQQLESHSF-YNLSKVTHIEIRNTRNLTYIDPD-ALK  102 (239)
T ss_dssp             TTCCEEEEES-CCCSEECTTT-----TTTCTTCCEEEEECCSSCCEECTTTE-ESCTTCCEEEEEEETTCCEECTT-SEE
T ss_pred             CcccEEEEeC-CcceEECHHH-----ccCCCCCcEEeCCCCCCcceeCHhHc-CCCcCCcEEECCCCCCeeEcCHH-HhC
Confidence            3799999998 4565432211     24568999999999632543211111 35899999999973355432211 124


Q ss_pred             cCCcCCEEeccCCCCCCHHHHHHHHHhCCCCc---EEeccCCCCCCH
Q 026356          128 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELE---SLNLTRYVNMIL  171 (240)
Q Consensus       128 ~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~---~L~l~~c~~it~  171 (240)
                      .+++|+.|+++++ .++.  +.. ...+++|+   .|+++++..++.
T Consensus       103 ~l~~L~~L~l~~n-~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~  145 (239)
T 2xwt_C          103 ELPLLKFLGIFNT-GLKM--FPD-LTKVYSTDIFFILEITDNPYMTS  145 (239)
T ss_dssp             CCTTCCEEEEEEE-CCCS--CCC-CTTCCBCCSEEEEEEESCTTCCE
T ss_pred             CCCCCCEEeCCCC-CCcc--ccc-cccccccccccEEECCCCcchhh
Confidence            6789999999998 5654  222 23567777   999998635543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.14  E-value=6.1e-09  Score=97.35  Aligned_cols=133  Identities=17%  Similarity=0.150  Sum_probs=74.2

Q ss_pred             EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCC
Q 026356           25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCP  104 (240)
Q Consensus        25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~  104 (240)
                      .|+|++|.. .....  -.+..+++|++|+++++..+.......     ...+++|+.|+++++ .++...-..+ ..++
T Consensus        28 ~LdLs~N~i-~~i~~--~~~~~l~~L~~LdLs~n~~~~~i~~~~-----f~~L~~L~~L~Ls~N-~l~~~~p~~~-~~l~   97 (844)
T 3j0a_A           28 RLLLSFNYI-RTVTA--SSFPFLEQLQLLELGSQYTPLTIDKEA-----FRNLPNLRILDLGSS-KIYFLHPDAF-QGLF   97 (844)
T ss_dssp             EEEEESCCC-CEECS--SSCSSCCSCSEEEECTTCCCCEECTTT-----TSSCTTCCEEECTTC-CCCEECTTSS-CSCS
T ss_pred             EEECCCCcC-CccCh--hHCcccccCeEEeCCCCCCccccCHHH-----hcCCCCCCEEECCCC-cCcccCHhHc-cCCc
Confidence            488888763 22111  123477888888888753332211111     245578888888885 5543211122 2477


Q ss_pred             CCCEEEecCCCCCCHHHHHH-HHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCC
Q 026356          105 ELKVFSIYWNVRVTDIGIQH-LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMI  170 (240)
Q Consensus       105 ~L~~L~l~~~~~l~~~~~~~-l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it  170 (240)
                      +|++|++++| .+++..... ....+++|++|++++| .++.........++++|+.|+++++ .++
T Consensus        98 ~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N-~i~  161 (844)
T 3j0a_A           98 HLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSN-QIF  161 (844)
T ss_dssp             SCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESS-CCC
T ss_pred             ccCEeeCcCC-CCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCC-cCC
Confidence            7888888876 444321111 1235678888888887 5554322222245778888888774 443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.12  E-value=9e-08  Score=85.82  Aligned_cols=131  Identities=18%  Similarity=0.188  Sum_probs=83.6

Q ss_pred             EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCC
Q 026356           25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCP  104 (240)
Q Consensus        25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~  104 (240)
                      .|+|++|.. ..  +..-.+..+++|++|++++| .|....-.     ....+++|++|+++++ .++.-....+ ..++
T Consensus        56 ~LdLs~N~i-~~--l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~-----~f~~L~~L~~L~Ls~N-~l~~l~~~~f-~~L~  124 (635)
T 4g8a_A           56 NLDLSFNPL-RH--LGSYSFFSFPELQVLDLSRC-EIQTIEDG-----AYQSLSHLSTLILTGN-PIQSLALGAF-SGLS  124 (635)
T ss_dssp             EEECTTSCC-CE--ECTTTTTTCTTCCEEECTTC-CCCEECTT-----TTTTCTTCCEEECTTC-CCCEECGGGG-TTCT
T ss_pred             EEEeeCCCC-CC--CCHHHHhCCCCCCEEECCCC-cCCCcChh-----HhcCCCCCCEEEccCC-cCCCCCHHHh-cCCC
Confidence            499999873 32  22222458899999999995 45432111     1245689999999995 5654221122 3588


Q ss_pred             CCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCC
Q 026356          105 ELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMI  170 (240)
Q Consensus       105 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it  170 (240)
                      +|++|+++++ .++.-.-. ....+++|++|+++++ .++..........+++|+.|+++++ .++
T Consensus       125 ~L~~L~Ls~N-~l~~l~~~-~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~l~  186 (635)
T 4g8a_A          125 SLQKLVAVET-NLASLENF-PIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQ  186 (635)
T ss_dssp             TCCEEECTTS-CCCCSTTC-CCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS-CCC
T ss_pred             CCCEEECCCC-cCCCCChh-hhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCc-ccc
Confidence            9999999987 44421111 1246789999999999 5654322223345889999999985 454

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.11  E-value=5e-08  Score=82.29  Aligned_cols=113  Identities=17%  Similarity=0.238  Sum_probs=47.6

Q ss_pred             cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHH
Q 026356           46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL  125 (240)
Q Consensus        46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l  125 (240)
                      .+++|+.|++++ +.+....-..     ...+++|++|+++++ .++...-..+ ..+++|++|+++++ .++...-. .
T Consensus        62 ~l~~L~~L~L~~-N~i~~i~~~~-----~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N-~i~~~~~~-~  131 (361)
T 2xot_A           62 RLTNLHSLLLSH-NHLNFISSEA-----FVPVPNLRYLDLSSN-HLHTLDEFLF-SDLQALEVLLLYNN-HIVVVDRN-A  131 (361)
T ss_dssp             CCTTCCEEECCS-SCCCEECTTT-----TTTCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSS-CCCEECTT-T
T ss_pred             cccccCEEECCC-CcCCccChhh-----ccCCCCCCEEECCCC-cCCcCCHHHh-CCCcCCCEEECCCC-cccEECHH-H
Confidence            455566666665 3343221111     123455666666653 4432111111 13555666666654 33221111 1


Q ss_pred             HHcCCcCCEEeccCCCCCCHHHHHHHH--HhCCCCcEEeccCCCCCC
Q 026356          126 VKNCKHIIDLNLSGCKNLLDKSLQLIA--DNYQELESLNLTRYVNMI  170 (240)
Q Consensus       126 ~~~~~~L~~L~l~~c~~ltd~~l~~l~--~~~~~L~~L~l~~c~~it  170 (240)
                      ...+++|+.|+++++ .++......+.  ..+++|+.|+++++ .++
T Consensus       132 ~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~  176 (361)
T 2xot_A          132 FEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLK  176 (361)
T ss_dssp             TTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCC
T ss_pred             hCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCC
Confidence            124456666666665 44431111110  23555666666653 444

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.08  E-value=3.4e-08  Score=87.79  Aligned_cols=114  Identities=17%  Similarity=0.181  Sum_probs=72.6

Q ss_pred             CCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhC
Q 026356           76 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY  155 (240)
Q Consensus        76 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~  155 (240)
                      .+++|+.|++++| .++...... ...+++|++|++++| .+++..+......+++|+.|++++| .+++.....+ ..+
T Consensus       419 ~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l  493 (570)
T 2z63_A          419 SLRNLIYLDISHT-HTRVAFNGI-FNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAF-NSL  493 (570)
T ss_dssp             TCTTCCEEECTTS-CCEECCTTT-TTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTT-TTC
T ss_pred             cCCCCCEEeCcCC-cccccchhh-hhcCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCCC-ccccCChhhh-hcc
Confidence            4467777777775 333221111 124788888888887 3443222233457889999999999 7775433333 358


Q ss_pred             CCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCc
Q 026356          156 QELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGD  208 (240)
Q Consensus       156 ~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~  208 (240)
                      ++|+.|++++| .+++..        +.     .+.+++.|+.++++.+.+..
T Consensus       494 ~~L~~L~l~~n-~l~~~~--------~~-----~~~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          494 SSLQVLNMASN-QLKSVP--------DG-----IFDRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             TTCCEEECCSS-CCSCCC--------TT-----TTTTCTTCCEEECCSSCBCC
T ss_pred             cCCCEEeCCCC-cCCCCC--------HH-----HhhcccCCcEEEecCCcccC
Confidence            89999999996 555421        11     24567889999998776653

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.08  E-value=8.9e-08  Score=85.86  Aligned_cols=136  Identities=13%  Similarity=0.172  Sum_probs=89.7

Q ss_pred             CCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHc
Q 026356           49 HVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKN  128 (240)
Q Consensus        49 ~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~  128 (240)
                      ++++|++++ +.|+...-..     ...+++|++|++++| .++.-.-.++ ..+++|++|+++++ +++.-... ...+
T Consensus        53 ~~~~LdLs~-N~i~~l~~~~-----f~~l~~L~~L~Ls~N-~i~~i~~~~f-~~L~~L~~L~Ls~N-~l~~l~~~-~f~~  122 (635)
T 4g8a_A           53 STKNLDLSF-NPLRHLGSYS-----FFSFPELQVLDLSRC-EIQTIEDGAY-QSLSHLSTLILTGN-PIQSLALG-AFSG  122 (635)
T ss_dssp             TCCEEECTT-SCCCEECTTT-----TTTCTTCCEEECTTC-CCCEECTTTT-TTCTTCCEEECTTC-CCCEECGG-GGTT
T ss_pred             CCCEEEeeC-CCCCCCCHHH-----HhCCCCCCEEECCCC-cCCCcChhHh-cCCCCCCEEEccCC-cCCCCCHH-HhcC
Confidence            699999999 6776533222     245699999999996 5543111111 35899999999988 45432211 2357


Q ss_pred             CCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCc
Q 026356          129 CKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGD  208 (240)
Q Consensus       129 ~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~  208 (240)
                      +++|++|++++| .++...-.. ..++++|+.|+++++ .++....       +.     ...+++.|+.++++.+.+..
T Consensus       123 L~~L~~L~Ls~N-~l~~l~~~~-~~~L~~L~~L~Ls~N-~l~~~~~-------~~-----~~~~l~~L~~L~L~~N~l~~  187 (635)
T 4g8a_A          123 LSSLQKLVAVET-NLASLENFP-IGHLKTLKELNVAHN-LIQSFKL-------PE-----YFSNLTNLEHLDLSSNKIQS  187 (635)
T ss_dssp             CTTCCEEECTTS-CCCCSTTCC-CTTCTTCCEEECCSS-CCCCCCC-------CG-----GGGGCTTCCEEECCSSCCCE
T ss_pred             CCCCCEEECCCC-cCCCCChhh-hhcCcccCeeccccC-ccccCCC-------ch-----hhccchhhhhhcccCccccc
Confidence            889999999999 666422111 235889999999995 4432110       11     33567789999998887765


Q ss_pred             h
Q 026356          209 H  209 (240)
Q Consensus       209 ~  209 (240)
                      .
T Consensus       188 ~  188 (635)
T 4g8a_A          188 I  188 (635)
T ss_dssp             E
T ss_pred             c
Confidence            3

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.06  E-value=1.8e-07  Score=73.39  Aligned_cols=36  Identities=11%  Similarity=0.185  Sum_probs=15.1

Q ss_pred             cCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccC
Q 026356          128 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTR  165 (240)
Q Consensus       128 ~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~  165 (240)
                      .+++|+.|+++++ .++......+ ..+++|+.|++++
T Consensus       126 ~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~  161 (220)
T 2v9t_B          126 DLHNLNLLSLYDN-KLQTIAKGTF-SPLRAIQTMHLAQ  161 (220)
T ss_dssp             TCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCS
T ss_pred             CCCCCCEEECCCC-cCCEECHHHH-hCCCCCCEEEeCC
Confidence            3445555555555 3332211111 1244555555554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.04  E-value=3.8e-07  Score=71.96  Aligned_cols=134  Identities=13%  Similarity=0.164  Sum_probs=75.7

Q ss_pred             CCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHH
Q 026356           47 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV  126 (240)
Q Consensus        47 ~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~  126 (240)
                      .++|+.|++++ +.+....-..     ...+++|+.|+++++ .++...... ...+++|+.|+++++ .++... ....
T Consensus        39 ~~~L~~L~Ls~-n~i~~~~~~~-----~~~l~~L~~L~L~~N-~l~~i~~~~-~~~l~~L~~L~Ls~N-~l~~l~-~~~~  108 (229)
T 3e6j_A           39 PTNAQILYLHD-NQITKLEPGV-----FDSLINLKELYLGSN-QLGALPVGV-FDSLTQLTVLDLGTN-QLTVLP-SAVF  108 (229)
T ss_dssp             CTTCSEEECCS-SCCCCCCTTT-----TTTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCCCC-TTTT
T ss_pred             CCCCCEEEcCC-CccCccCHHH-----hhCccCCcEEECCCC-CCCCcChhh-cccCCCcCEEECCCC-cCCccC-hhHh
Confidence            36788888887 4454421111     234578888888874 553221111 124777888888876 444211 1112


Q ss_pred             HcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCC
Q 026356          127 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNG  206 (240)
Q Consensus       127 ~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~  206 (240)
                      ..+++|+.|+++++ .++.-. ..+ ..+++|+.|+++++ .++..             ..-.+.+++.|+.+++..+.+
T Consensus       109 ~~l~~L~~L~Ls~N-~l~~lp-~~~-~~l~~L~~L~L~~N-~l~~~-------------~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A          109 DRLVHLKELFMCCN-KLTELP-RGI-ERLTHLTHLALDQN-QLKSI-------------PHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             TTCTTCCEEECCSS-CCCSCC-TTG-GGCTTCSEEECCSS-CCCCC-------------CTTTTTTCTTCCEEECTTSCB
T ss_pred             CcchhhCeEeccCC-cccccC-ccc-ccCCCCCEEECCCC-cCCcc-------------CHHHHhCCCCCCEEEeeCCCc
Confidence            35678888888888 565211 112 45778888888874 55421             000235566777777766665


Q ss_pred             C
Q 026356          207 G  207 (240)
Q Consensus       207 ~  207 (240)
                      .
T Consensus       172 ~  172 (229)
T 3e6j_A          172 D  172 (229)
T ss_dssp             C
T ss_pred             c
Confidence            4

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.04  E-value=8.4e-08  Score=86.95  Aligned_cols=36  Identities=11%  Similarity=-0.067  Sum_probs=17.9

Q ss_pred             cCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356          191 HGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  233 (240)
Q Consensus       191 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  233 (240)
                      .+++.|+.++++.+.+... .      ..-.++|+.|++++++
T Consensus       563 ~~l~~L~~L~Ls~N~l~~i-p------~~~~~~L~~L~Ls~N~  598 (636)
T 4eco_A          563 TLCPSLTQLQIGSNDIRKV-N------EKITPNISVLDIKDNP  598 (636)
T ss_dssp             GGCSSCCEEECCSSCCCBC-C------SCCCTTCCEEECCSCT
T ss_pred             hcCCCCCEEECCCCcCCcc-C------HhHhCcCCEEECcCCC
Confidence            3455566666666555322 1      0112566666665553

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.03  E-value=5.1e-07  Score=80.40  Aligned_cols=162  Identities=9%  Similarity=0.127  Sum_probs=103.2

Q ss_pred             eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356           24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC  103 (240)
Q Consensus        24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~  103 (240)
                      +.|++++|...+ ....  .+..+++|+.|++++ +.++...  .+... ...+++|+.|+++++ .++...-......+
T Consensus       356 ~~L~l~~n~l~~-~~~~--~~~~l~~L~~L~L~~-N~l~~~~--~~~~~-~~~l~~L~~L~l~~N-~l~~~~~~~~~~~l  427 (562)
T 3a79_B          356 TFLNFTQNVFTD-SVFQ--GCSTLKRLQTLILQR-NGLKNFF--KVALM-TKNMSSLETLDVSLN-SLNSHAYDRTCAWA  427 (562)
T ss_dssp             CEEECCSSCCCT-TTTT--TCCSCSSCCEEECCS-SCCCBTT--HHHHT-TTTCTTCCEEECTTS-CCBSCCSSCCCCCC
T ss_pred             eEEECCCCcccc-chhh--hhcccCCCCEEECCC-CCcCCcc--cchhh-hcCCCCCCEEECCCC-cCCCccChhhhcCc
Confidence            349999887432 1122  234789999999999 4666421  11111 245699999999996 55431111122357


Q ss_pred             CCCCEEEecCCCCCCHHHHHHHHHcC-CcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhCh
Q 026356          104 PELKVFSIYWNVRVTDIGIQHLVKNC-KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNI  182 (240)
Q Consensus       104 ~~L~~L~l~~~~~l~~~~~~~l~~~~-~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~  182 (240)
                      ++|++|+++++ .+++..    .... ++|+.|++++| .++.-. ..+. .+++|+.|+++++ .++.     +...  
T Consensus       428 ~~L~~L~l~~n-~l~~~~----~~~l~~~L~~L~L~~N-~l~~ip-~~~~-~l~~L~~L~L~~N-~l~~-----l~~~--  491 (562)
T 3a79_B          428 ESILVLNLSSN-MLTGSV----FRCLPPKVKVLDLHNN-RIMSIP-KDVT-HLQALQELNVASN-QLKS-----VPDG--  491 (562)
T ss_dssp             TTCCEEECCSS-CCCGGG----GSSCCTTCSEEECCSS-CCCCCC-TTTT-SSCCCSEEECCSS-CCCC-----CCTT--
T ss_pred             ccCCEEECCCC-CCCcch----hhhhcCcCCEEECCCC-cCcccC-hhhc-CCCCCCEEECCCC-CCCC-----CCHH--
Confidence            89999999988 566432    2333 69999999999 777311 1122 5889999999995 5653     1100  


Q ss_pred             hhhhHHHhcCCccceeecccCCCCCchhHHHHH
Q 026356          183 LLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYI  215 (240)
Q Consensus       183 ~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~  215 (240)
                            .+.+++.|+.++++.+..........+
T Consensus       492 ------~~~~l~~L~~L~l~~N~~~c~c~~~~~  518 (562)
T 3a79_B          492 ------VFDRLTSLQYIWLHDNPWDCTCPGIRY  518 (562)
T ss_dssp             ------STTTCTTCCCEECCSCCBCCCHHHHHH
T ss_pred             ------HHhcCCCCCEEEecCCCcCCCcchHHH
Confidence                  246678899999988887754444444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.03  E-value=2.9e-07  Score=72.65  Aligned_cols=126  Identities=15%  Similarity=0.157  Sum_probs=83.4

Q ss_pred             EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCC
Q 026356           25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCP  104 (240)
Q Consensus        25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~  104 (240)
                      .|++++|....-   ..-.+..+++|++|++++ +.+......     ....+++|+.|+++++ .++...-. ....++
T Consensus        44 ~L~Ls~n~i~~~---~~~~~~~l~~L~~L~L~~-N~l~~i~~~-----~~~~l~~L~~L~Ls~N-~l~~l~~~-~~~~l~  112 (229)
T 3e6j_A           44 ILYLHDNQITKL---EPGVFDSLINLKELYLGS-NQLGALPVG-----VFDSLTQLTVLDLGTN-QLTVLPSA-VFDRLV  112 (229)
T ss_dssp             EEECCSSCCCCC---CTTTTTTCTTCCEEECCS-SCCCCCCTT-----TTTTCTTCCEEECCSS-CCCCCCTT-TTTTCT
T ss_pred             EEEcCCCccCcc---CHHHhhCccCCcEEECCC-CCCCCcChh-----hcccCCCcCEEECCCC-cCCccChh-HhCcch
Confidence            489988874321   111234789999999999 456432211     1245699999999995 66532211 123588


Q ss_pred             CCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCC
Q 026356          105 ELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY  166 (240)
Q Consensus       105 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c  166 (240)
                      +|++|+++++ .++.  +..-...+++|+.|+++++ .++..... ....+++|+.|+++++
T Consensus       113 ~L~~L~Ls~N-~l~~--lp~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A          113 HLKELFMCCN-KLTE--LPRGIERLTHLTHLALDQN-QLKSIPHG-AFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             TCCEEECCSS-CCCS--CCTTGGGCTTCSEEECCSS-CCCCCCTT-TTTTCTTCCEEECTTS
T ss_pred             hhCeEeccCC-cccc--cCcccccCCCCCEEECCCC-cCCccCHH-HHhCCCCCCEEEeeCC
Confidence            9999999987 5552  2122357899999999999 67643222 2245889999999985

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.01  E-value=1.5e-07  Score=73.89  Aligned_cols=134  Identities=16%  Similarity=0.207  Sum_probs=87.6

Q ss_pred             CCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHH
Q 026356           48 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK  127 (240)
Q Consensus        48 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~  127 (240)
                      ++|+.|++++ +.+......     ....+++|+.|+++++ .++...-..+ ..+++|++|+++++ .++.-. ..+..
T Consensus        32 ~~l~~L~l~~-n~i~~i~~~-----~~~~l~~L~~L~Ls~N-~i~~~~~~~~-~~l~~L~~L~Ls~N-~l~~l~-~~~f~  101 (220)
T 2v9t_B           32 ETITEIRLEQ-NTIKVIPPG-----AFSPYKKLRRIDLSNN-QISELAPDAF-QGLRSLNSLVLYGN-KITELP-KSLFE  101 (220)
T ss_dssp             TTCCEEECCS-SCCCEECTT-----SSTTCTTCCEEECCSS-CCCEECTTTT-TTCSSCCEEECCSS-CCCCCC-TTTTT
T ss_pred             cCCCEEECCC-CcCCCcCHh-----HhhCCCCCCEEECCCC-cCCCcCHHHh-hCCcCCCEEECCCC-cCCccC-HhHcc
Confidence            5799999998 556543221     1245689999999995 6654221222 24789999999987 454211 11234


Q ss_pred             cCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCC
Q 026356          128 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGG  207 (240)
Q Consensus       128 ~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~  207 (240)
                      .+++|+.|+++++ .++......+ ..+++|+.|+++++ .++....             -.+.+++.|+.++++.+.+.
T Consensus       102 ~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~-------------~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          102 GLFSLQLLLLNAN-KINCLRVDAF-QDLHNLNLLSLYDN-KLQTIAK-------------GTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             TCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCSCCCT-------------TTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCEEECCCC-CCCEeCHHHc-CCCCCCCEEECCCC-cCCEECH-------------HHHhCCCCCCEEEeCCCCcC
Confidence            6789999999999 6765322222 35789999999995 5654210             13456778888888776664

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.01  E-value=1.5e-07  Score=73.79  Aligned_cols=12  Identities=25%  Similarity=0.490  Sum_probs=6.4

Q ss_pred             cCCCCceEeccC
Q 026356           46 RYRHVREINLEF   57 (240)
Q Consensus        46 ~~~~L~~L~l~~   57 (240)
                      .+++|+.|++++
T Consensus        55 ~l~~L~~L~L~~   66 (220)
T 2v70_A           55 KLPQLRKINFSN   66 (220)
T ss_dssp             GCTTCCEEECCS
T ss_pred             cCCCCCEEECCC
Confidence            445555555555

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.01  E-value=3.4e-07  Score=70.44  Aligned_cols=105  Identities=18%  Similarity=0.271  Sum_probs=70.1

Q ss_pred             hcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHH
Q 026356           45 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH  124 (240)
Q Consensus        45 ~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~  124 (240)
                      ..+++|+.|+++++ .+.+.  ..+. .    +++|+.|+++++ .++.  +......+++|++|+++++ .+++-  ..
T Consensus        45 ~~l~~L~~L~ls~n-~l~~l--~~~~-~----l~~L~~L~l~~n-~l~~--l~~~~~~~~~L~~L~L~~N-~l~~l--~~  110 (198)
T 1ds9_A           45 STLKACKHLALSTN-NIEKI--SSLS-G----MENLRILSLGRN-LIKK--IENLDAVADTLEELWISYN-QIASL--SG  110 (198)
T ss_dssp             HHTTTCSEEECSEE-EESCC--CCHH-H----HTTCCEEEEEEE-EECS--CSSHHHHHHHCSEEEEEEE-ECCCH--HH
T ss_pred             hcCCCCCEEECCCC-CCccc--cccc-c----CCCCCEEECCCC-Cccc--ccchhhcCCcCCEEECcCC-cCCcC--Cc
Confidence            47889999999984 45442  1222 2    288999999885 5542  2222334678999999887 56542  22


Q ss_pred             HHHcCCcCCEEeccCCCCCCHHHH-HHHHHhCCCCcEEeccCC
Q 026356          125 LVKNCKHIIDLNLSGCKNLLDKSL-QLIADNYQELESLNLTRY  166 (240)
Q Consensus       125 l~~~~~~L~~L~l~~c~~ltd~~l-~~l~~~~~~L~~L~l~~c  166 (240)
                       ...+++|+.|+++++ .+++... ..+ ..+++|+.|+++++
T Consensus       111 -~~~l~~L~~L~l~~N-~i~~~~~~~~l-~~l~~L~~L~l~~N  150 (198)
T 1ds9_A          111 -IEKLVNLRVLYMSNN-KITNWGEIDKL-AALDKLEDLLLAGN  150 (198)
T ss_dssp             -HHHHHHSSEEEESEE-ECCCHHHHHHH-TTTTTCSEEEECSC
T ss_pred             -cccCCCCCEEECCCC-cCCchhHHHHH-hcCCCCCEEEecCC
Confidence             346688999999998 6776433 333 35889999999885

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.01  E-value=1.2e-07  Score=74.50  Aligned_cols=154  Identities=10%  Similarity=0.094  Sum_probs=95.8

Q ss_pred             eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356           24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC  103 (240)
Q Consensus        24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~  103 (240)
                      +.++++++....      +...-.+.+++|++++ +.++.......    ...+++|+.|+++++ .++...-..+ ..+
T Consensus        14 ~~l~~s~n~l~~------iP~~~~~~~~~L~L~~-N~l~~~~~~~~----~~~l~~L~~L~L~~N-~i~~i~~~~~-~~l   80 (220)
T 2v70_A           14 TTVDCSNQKLNK------IPEHIPQYTAELRLNN-NEFTVLEATGI----FKKLPQLRKINFSNN-KITDIEEGAF-EGA   80 (220)
T ss_dssp             TEEECCSSCCSS------CCSCCCTTCSEEECCS-SCCCEECCCCC----GGGCTTCCEEECCSS-CCCEECTTTT-TTC
T ss_pred             CEeEeCCCCccc------CccCCCCCCCEEEcCC-CcCCccCchhh----hccCCCCCEEECCCC-cCCEECHHHh-CCC
Confidence            357777776321      2111234689999999 55654311111    134589999999995 6654222122 248


Q ss_pred             CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChh
Q 026356          104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNIL  183 (240)
Q Consensus       104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~  183 (240)
                      ++|++|+++++ .++...-. ....+++|++|+++++ .++......+ ..+++|+.|+++++ .++...        +.
T Consensus        81 ~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~--------~~  147 (220)
T 2v70_A           81 SGVNEILLTSN-RLENVQHK-MFKGLESLKTLMLRSN-RITCVGNDSF-IGLSSVRLLSLYDN-QITTVA--------PG  147 (220)
T ss_dssp             TTCCEEECCSS-CCCCCCGG-GGTTCSSCCEEECTTS-CCCCBCTTSS-TTCTTCSEEECTTS-CCCCBC--------TT
T ss_pred             CCCCEEECCCC-ccCccCHh-HhcCCcCCCEEECCCC-cCCeECHhHc-CCCccCCEEECCCC-cCCEEC--------HH
Confidence            89999999987 45432211 2246889999999999 6764322222 25789999999995 565411        11


Q ss_pred             hhhHHHhcCCccceeecccCCCCCc
Q 026356          184 LMSEFIYHGIRFFQAVQINSSNGGD  208 (240)
Q Consensus       184 ~l~~l~~~~~~~L~~l~l~~~~~~~  208 (240)
                           .+.+++.|+.++++.+.+..
T Consensus       148 -----~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          148 -----AFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             -----TTTTCTTCCEEECCSCCEEC
T ss_pred             -----HhcCCCCCCEEEecCcCCcC
Confidence                 34567888889887777653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.95  E-value=4.8e-07  Score=69.59  Aligned_cols=123  Identities=21%  Similarity=0.233  Sum_probs=82.5

Q ss_pred             eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356           24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC  103 (240)
Q Consensus        24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~  103 (240)
                      +.|++++|....   +.  .+..+++|+.|+++++ .+..  +......+    ++|+.|+++++ .++.-  ..+. .+
T Consensus        51 ~~L~ls~n~l~~---l~--~~~~l~~L~~L~l~~n-~l~~--l~~~~~~~----~~L~~L~L~~N-~l~~l--~~~~-~l  114 (198)
T 1ds9_A           51 KHLALSTNNIEK---IS--SLSGMENLRILSLGRN-LIKK--IENLDAVA----DTLEELWISYN-QIASL--SGIE-KL  114 (198)
T ss_dssp             SEEECSEEEESC---CC--CHHHHTTCCEEEEEEE-EECS--CSSHHHHH----HHCSEEEEEEE-ECCCH--HHHH-HH
T ss_pred             CEEECCCCCCcc---cc--ccccCCCCCEEECCCC-Cccc--ccchhhcC----CcCCEEECcCC-cCCcC--Cccc-cC
Confidence            348888776333   22  2347899999999985 4542  12222222    78999999996 77653  3344 47


Q ss_pred             CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHH---------HHHHHHhCCCCcEEecc
Q 026356          104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKS---------LQLIADNYQELESLNLT  164 (240)
Q Consensus       104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~---------l~~l~~~~~~L~~L~l~  164 (240)
                      ++|++|+++++ .+++.........+++|+.|++++| .+++..         ...+...+++|+.|+-.
T Consensus       115 ~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~  182 (198)
T 1ds9_A          115 VNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKLDGM  182 (198)
T ss_dssp             HHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSEECCG
T ss_pred             CCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCC-ccccccccccchHHHHHHHHHhCCCcEEECCc
Confidence            89999999987 5765443234457899999999999 565431         12234569999999843

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.85  E-value=2.8e-07  Score=77.66  Aligned_cols=178  Identities=11%  Similarity=0.118  Sum_probs=108.2

Q ss_pred             eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356           24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC  103 (240)
Q Consensus        24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~  103 (240)
                      +.++++++...      .+...-.+.++.|++++ +.++......+    ...+++|+.|+++++ .++...-..+ ..+
T Consensus        21 ~~l~c~~~~l~------~iP~~~~~~l~~L~Ls~-N~l~~l~~~~~----~~~l~~L~~L~L~~N-~i~~i~~~~~-~~l   87 (361)
T 2xot_A           21 NILSCSKQQLP------NVPQSLPSYTALLDLSH-NNLSRLRAEWT----PTRLTNLHSLLLSHN-HLNFISSEAF-VPV   87 (361)
T ss_dssp             TEEECCSSCCS------SCCSSCCTTCSEEECCS-SCCCEECTTSS----SSCCTTCCEEECCSS-CCCEECTTTT-TTC
T ss_pred             CEEEeCCCCcC------ccCccCCCCCCEEECCC-CCCCccChhhh----hhcccccCEEECCCC-cCCccChhhc-cCC
Confidence            34777766521      12211234699999999 56765332211    115699999999995 6654322222 258


Q ss_pred             CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChh
Q 026356          104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNIL  183 (240)
Q Consensus       104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~  183 (240)
                      ++|++|+++++ .++...- .....+++|+.|+++++ .++......+ ..+++|+.|+++++ .++....     .   
T Consensus        88 ~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~i~~~~~~~~-~~l~~L~~L~L~~N-~l~~l~~-----~---  154 (361)
T 2xot_A           88 PNLRYLDLSSN-HLHTLDE-FLFSDLQALEVLLLYNN-HIVVVDRNAF-EDMAQLQKLYLSQN-QISRFPV-----E---  154 (361)
T ss_dssp             TTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSS-CCCSCCG-----G---
T ss_pred             CCCCEEECCCC-cCCcCCH-HHhCCCcCCCEEECCCC-cccEECHHHh-CCcccCCEEECCCC-cCCeeCH-----H---
Confidence            89999999987 4543211 12346789999999999 6764322222 35889999999995 6654110     0   


Q ss_pred             hhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccc--cchhhhhhhh
Q 026356          184 LMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKH--GKEKHIIETI  233 (240)
Q Consensus       184 ~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~--L~~L~l~~c~  233 (240)
                      .+.  ....++.|+.++++.+.+... ....+   ..++.  ++.|++.++|
T Consensus       155 ~~~--~~~~l~~L~~L~L~~N~l~~l-~~~~~---~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          155 LIK--DGNKLPKLMLLDLSSNKLKKL-PLTDL---QKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             GTC------CTTCCEEECCSSCCCCC-CHHHH---HHSCHHHHTTEECCSSC
T ss_pred             Hhc--CcccCCcCCEEECCCCCCCcc-CHHHh---hhccHhhcceEEecCCC
Confidence            000  114578899999999988865 22222   34454  4778877654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.85  E-value=6.3e-06  Score=74.46  Aligned_cols=47  Identities=11%  Similarity=0.042  Sum_probs=25.8

Q ss_pred             EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCC
Q 026356           25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGC   88 (240)
Q Consensus        25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c   88 (240)
                      .|++++|....      +.. .+++|+.|+++++ .++.         .+..+++|++|+++++
T Consensus        65 ~L~L~~N~l~~------lp~-~l~~L~~L~Ls~N-~l~~---------lp~~l~~L~~L~Ls~N  111 (622)
T 3g06_A           65 TLVIPDNNLTS------LPA-LPPELRTLEVSGN-QLTS---------LPVLPPGLLELSIFSN  111 (622)
T ss_dssp             EEEECSCCCSC------CCC-CCTTCCEEEECSC-CCSC---------CCCCCTTCCEEEECSC
T ss_pred             EEEecCCCCCC------CCC-cCCCCCEEEcCCC-cCCc---------CCCCCCCCCEEECcCC
Confidence            37777776321      111 4567777777773 3442         1123366666666664

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.74  E-value=5.5e-07  Score=84.17  Aligned_cols=111  Identities=14%  Similarity=0.148  Sum_probs=66.3

Q ss_pred             CeEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHH-HHh
Q 026356           23 PKVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEI-ISS  101 (240)
Q Consensus        23 ~~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-l~~  101 (240)
                      .+.|++++|.....-...  .+.++++|+.|+++++ .+....-..     ...+++|++|++++| .+++..... ...
T Consensus        50 L~~LdLs~n~~~~~i~~~--~f~~L~~L~~L~Ls~N-~l~~~~p~~-----~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~  120 (844)
T 3j0a_A           50 LQLLELGSQYTPLTIDKE--AFRNLPNLRILDLGSS-KIYFLHPDA-----FQGLFHLFELRLYFC-GLSDAVLKDGYFR  120 (844)
T ss_dssp             CSEEEECTTCCCCEECTT--TTSSCTTCCEEECTTC-CCCEECTTS-----SCSCSSCCCEECTTC-CCSSCCSTTCCCS
T ss_pred             CeEEeCCCCCCccccCHH--HhcCCCCCCEEECCCC-cCcccCHhH-----ccCCcccCEeeCcCC-CCCcccccCcccc
Confidence            344888888543321111  2347888999999884 454322111     245688888888886 555322111 112


Q ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCC
Q 026356          102 TCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLL  144 (240)
Q Consensus       102 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~lt  144 (240)
                      .+++|++|+++++ .++..........+++|++|+++++ .++
T Consensus       121 ~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N-~i~  161 (844)
T 3j0a_A          121 NLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSN-QIF  161 (844)
T ss_dssp             SCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESS-CCC
T ss_pred             ccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCC-cCC
Confidence            4788888888877 4443322223357788888888887 454

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.74  E-value=4.5e-06  Score=74.64  Aligned_cols=105  Identities=20%  Similarity=0.208  Sum_probs=67.2

Q ss_pred             CCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHH
Q 026356           48 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK  127 (240)
Q Consensus        48 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~  127 (240)
                      ..|+.|++++ +.++..  ..+     ..+++|+.|+++++ .++.- -..+ ..+++|+.|+++++ .++.  +. -..
T Consensus       441 ~~L~~L~Ls~-n~l~~l--p~~-----~~l~~L~~L~Ls~N-~l~~l-p~~~-~~l~~L~~L~Ls~N-~l~~--lp-~l~  505 (567)
T 1dce_A          441 ADVRVLHLAH-KDLTVL--CHL-----EQLLLVTHLDLSHN-RLRAL-PPAL-AALRCLEVLQASDN-ALEN--VD-GVA  505 (567)
T ss_dssp             TTCSEEECTT-SCCSSC--CCG-----GGGTTCCEEECCSS-CCCCC-CGGG-GGCTTCCEEECCSS-CCCC--CG-GGT
T ss_pred             cCceEEEecC-CCCCCC--cCc-----cccccCcEeecCcc-ccccc-chhh-hcCCCCCEEECCCC-CCCC--Cc-ccC
Confidence            3588888888 456542  111     33478888998885 55521 0122 25888899999877 4553  22 234


Q ss_pred             cCCcCCEEeccCCCCCCHHH-HHHHHHhCCCCcEEeccCCCCCC
Q 026356          128 NCKHIIDLNLSGCKNLLDKS-LQLIADNYQELESLNLTRYVNMI  170 (240)
Q Consensus       128 ~~~~L~~L~l~~c~~ltd~~-l~~l~~~~~~L~~L~l~~c~~it  170 (240)
                      .+++|+.|+++++ .++... ...+ ..+++|+.|+++++ .++
T Consensus       506 ~l~~L~~L~Ls~N-~l~~~~~p~~l-~~l~~L~~L~L~~N-~l~  546 (567)
T 1dce_A          506 NLPRLQELLLCNN-RLQQSAAIQPL-VSCPRLVLLNLQGN-SLC  546 (567)
T ss_dssp             TCSSCCEEECCSS-CCCSSSTTGGG-GGCTTCCEEECTTS-GGG
T ss_pred             CCCCCcEEECCCC-CCCCCCCcHHH-hcCCCCCEEEecCC-cCC
Confidence            6788999999888 676542 2223 35888999999885 443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.69  E-value=3.7e-07  Score=70.03  Aligned_cols=126  Identities=16%  Similarity=0.165  Sum_probs=75.2

Q ss_pred             eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356           24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC  103 (240)
Q Consensus        24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~  103 (240)
                      +.++++++....      +...-..+|+.|++++ +.+.......+    ...+++|++|+++++ .++...-..+ ..+
T Consensus        11 ~~l~~s~~~l~~------ip~~~~~~l~~L~l~~-n~i~~~~~~~~----~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l   77 (192)
T 1w8a_A           11 TTVDCTGRGLKE------IPRDIPLHTTELLLND-NELGRISSDGL----FGRLPHLVKLELKRN-QLTGIEPNAF-EGA   77 (192)
T ss_dssp             TEEECTTSCCSS------CCSCCCTTCSEEECCS-CCCCSBCCSCS----GGGCTTCCEEECCSS-CCCCBCTTTT-TTC
T ss_pred             CEEEcCCCCcCc------CccCCCCCCCEEECCC-CcCCccCCccc----cccCCCCCEEECCCC-CCCCcCHhHc-CCc
Confidence            456777665211      1111234789999998 45543221111    123588999999984 6654211222 247


Q ss_pred             CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCC
Q 026356          104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY  166 (240)
Q Consensus       104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c  166 (240)
                      ++|++|+++++ .++...... ...+++|+.|+++++ .++......+ ..+++|+.|+++++
T Consensus        78 ~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N  136 (192)
T 1w8a_A           78 SHIQELQLGEN-KIKEISNKM-FLGLHQLKTLNLYDN-QISCVMPGSF-EHLNSLTSLNLASN  136 (192)
T ss_dssp             TTCCEEECCSC-CCCEECSSS-STTCTTCCEEECCSS-CCCEECTTSS-TTCTTCCEEECTTC
T ss_pred             ccCCEEECCCC-cCCccCHHH-hcCCCCCCEEECCCC-cCCeeCHHHh-hcCCCCCEEEeCCC
Confidence            88999999987 454322111 235789999999999 6764322222 34788999999985

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.68  E-value=1.5e-05  Score=72.04  Aligned_cols=37  Identities=0%  Similarity=-0.176  Sum_probs=20.7

Q ss_pred             CccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhh
Q 026356          193 IRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK  234 (240)
Q Consensus       193 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  234 (240)
                      ++.|+.++++.+.+... .  ..+  ..+++|+.|++.+++-
T Consensus       260 ~~~L~~L~Ls~N~L~~l-p--~~l--~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          260 PSGLLSLSVYRNQLTRL-P--ESL--IHLSSETTVNLEGNPL  296 (622)
T ss_dssp             CTTCCEEECCSSCCCSC-C--GGG--GGSCTTCEEECCSCCC
T ss_pred             cccCcEEeCCCCCCCcC-C--HHH--hhccccCEEEecCCCC
Confidence            34566666666665532 1  112  4566777777766653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.61  E-value=2.5e-06  Score=76.27  Aligned_cols=33  Identities=3%  Similarity=-0.249  Sum_probs=17.5

Q ss_pred             eeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhh
Q 026356          197 QAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIK  234 (240)
Q Consensus       197 ~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  234 (240)
                      +.++++.+.+...-   ..+  ..+++|+.|++.+++-
T Consensus       210 ~~L~Ls~N~l~~lp---~~l--~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          210 IFFRCRENRITHIP---ENI--LSLDPTCTIILEDNPL  242 (571)
T ss_dssp             EEEECCSSCCCCCC---GGG--GGSCTTEEEECCSSSC
T ss_pred             eEEecCCCcceecC---HHH--hcCCCCCEEEeeCCcC
Confidence            66666666555321   111  2366677776666553

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.55  E-value=3.5e-06  Score=64.62  Aligned_cols=116  Identities=17%  Similarity=0.152  Sum_probs=71.4

Q ss_pred             CCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHH
Q 026356           47 YRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLV  126 (240)
Q Consensus        47 ~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~  126 (240)
                      .++|+.|++++ +.++... ..     ...+++|+.|+++++ .++...-..+ ..+++|++|+++++ .++...... .
T Consensus        30 ~~~l~~L~L~~-n~i~~ip-~~-----~~~l~~L~~L~Ls~N-~i~~i~~~~f-~~l~~L~~L~Ls~N-~l~~i~~~~-f   98 (193)
T 2wfh_A           30 PRDVTELYLDG-NQFTLVP-KE-----LSNYKHLTLIDLSNN-RISTLSNQSF-SNMTQLLTLILSYN-RLRCIPPRT-F   98 (193)
T ss_dssp             CTTCCEEECCS-SCCCSCC-GG-----GGGCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCBCCTTT-T
T ss_pred             CCCCCEEECCC-CcCchhH-HH-----hhcccCCCEEECCCC-cCCEeCHhHc-cCCCCCCEEECCCC-ccCEeCHHH-h
Confidence            35799999998 5565321 11     234588999999984 6654222222 24788999999887 444322111 2


Q ss_pred             HcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHH
Q 026356          127 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLF  175 (240)
Q Consensus       127 ~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~  175 (240)
                      ..+++|+.|+++++ .++..... ....+++|+.|+++++.-..+..+.
T Consensus        99 ~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~~~C~c~l~  145 (193)
T 2wfh_A           99 DGLKSLRLLSLHGN-DISVVPEG-AFNDLSALSHLAIGANPLYCDCNMQ  145 (193)
T ss_dssp             TTCTTCCEEECCSS-CCCBCCTT-TTTTCTTCCEEECCSSCEECSGGGH
T ss_pred             CCCCCCCEEECCCC-CCCeeChh-hhhcCccccEEEeCCCCeecCCcCH
Confidence            46789999999998 67632211 1234788999999885333343333

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.55  E-value=2.1e-05  Score=70.25  Aligned_cols=106  Identities=12%  Similarity=0.101  Sum_probs=50.7

Q ss_pred             CccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCC
Q 026356           79 DLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQEL  158 (240)
Q Consensus        79 ~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L  158 (240)
                      .|+.|+++++ .++.  +..+ ..+++|+.|+++++ .++  .+......+++|+.|+++++ .++.  +..+ ..+++|
T Consensus       442 ~L~~L~Ls~n-~l~~--lp~~-~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N-~l~~--lp~l-~~l~~L  510 (567)
T 1dce_A          442 DVRVLHLAHK-DLTV--LCHL-EQLLLVTHLDLSHN-RLR--ALPPALAALRCLEVLQASDN-ALEN--VDGV-ANLPRL  510 (567)
T ss_dssp             TCSEEECTTS-CCSS--CCCG-GGGTTCCEEECCSS-CCC--CCCGGGGGCTTCCEEECCSS-CCCC--CGGG-TTCSSC
T ss_pred             CceEEEecCC-CCCC--CcCc-cccccCcEeecCcc-ccc--ccchhhhcCCCCCEEECCCC-CCCC--Cccc-CCCCCC
Confidence            4566666663 4433  1111 23556666666655 343  11112235566666666666 4543  1122 235666


Q ss_pred             cEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCc
Q 026356          159 ESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGD  208 (240)
Q Consensus       159 ~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~  208 (240)
                      +.|+++++ .++....       +.     .+.+++.|+.++++.+.+..
T Consensus       511 ~~L~Ls~N-~l~~~~~-------p~-----~l~~l~~L~~L~L~~N~l~~  547 (567)
T 1dce_A          511 QELLLCNN-RLQQSAA-------IQ-----PLVSCPRLVLLNLQGNSLCQ  547 (567)
T ss_dssp             CEEECCSS-CCCSSST-------TG-----GGGGCTTCCEEECTTSGGGG
T ss_pred             cEEECCCC-CCCCCCC-------cH-----HHhcCCCCCEEEecCCcCCC
Confidence            66666663 4432100       11     23445566666666555543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.53  E-value=4.9e-06  Score=62.58  Aligned_cols=109  Identities=15%  Similarity=0.167  Sum_probs=67.3

Q ss_pred             cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHH
Q 026356           46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL  125 (240)
Q Consensus        46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l  125 (240)
                      ..++|+.|++++ +.+.......     ...+++|+.|+++++ .++...-..+ ..+++|++|+++++ .++.... ..
T Consensus        26 ~~~~l~~L~l~~-n~l~~~~~~~-----~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~N-~l~~~~~-~~   95 (177)
T 2o6r_A           26 IPSSATRLELES-NKLQSLPHGV-----FDKLTQLTKLSLSQN-QIQSLPDGVF-DKLTKLTILYLHEN-KLQSLPN-GV   95 (177)
T ss_dssp             CCTTCSEEECCS-SCCCCCCTTT-----TTTCTTCSEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCCCCCT-TT
T ss_pred             CCCCCcEEEeCC-CcccEeCHHH-----hcCcccccEEECCCC-cceEeChhHc-cCCCccCEEECCCC-CccccCH-HH
Confidence            346789999988 4455321111     234588999999885 5553211111 25788999999876 4542211 12


Q ss_pred             HHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCC
Q 026356          126 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY  166 (240)
Q Consensus       126 ~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c  166 (240)
                      ...+++|+.|+++++ .++.... .+...+++|+.|+++++
T Consensus        96 ~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A           96 FDKLTQLKELALDTN-QLKSVPD-GIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             TTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSS
T ss_pred             hhCCcccCEEECcCC-cceEeCH-HHhcCCcccCEEEecCC
Confidence            245678999999988 6663221 12235788999999885

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.52  E-value=1.6e-05  Score=69.08  Aligned_cols=12  Identities=25%  Similarity=0.058  Sum_probs=6.0

Q ss_pred             CCCCCEEEecCC
Q 026356          103 CPELKVFSIYWN  114 (240)
Q Consensus       103 ~~~L~~L~l~~~  114 (240)
                      +++|++|+++++
T Consensus       236 l~~L~~L~l~~N  247 (454)
T 1jl5_A          236 LPFLTTIYADNN  247 (454)
T ss_dssp             CTTCCEEECCSS
T ss_pred             CCCCCEEECCCC
Confidence            444555555544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.41  E-value=9.5e-06  Score=62.17  Aligned_cols=109  Identities=18%  Similarity=0.221  Sum_probs=72.6

Q ss_pred             CCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCC
Q 026356           78 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE  157 (240)
Q Consensus        78 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~  157 (240)
                      ++|+.|++++. .++.-. .. ...+++|+.|+++++ .++...-.. ...+++|++|+++++ .++......+ ..+++
T Consensus        31 ~~l~~L~L~~n-~i~~ip-~~-~~~l~~L~~L~Ls~N-~i~~i~~~~-f~~l~~L~~L~Ls~N-~l~~i~~~~f-~~l~~  103 (193)
T 2wfh_A           31 RDVTELYLDGN-QFTLVP-KE-LSNYKHLTLIDLSNN-RISTLSNQS-FSNMTQLLTLILSYN-RLRCIPPRTF-DGLKS  103 (193)
T ss_dssp             TTCCEEECCSS-CCCSCC-GG-GGGCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCBCCTTTT-TTCTT
T ss_pred             CCCCEEECCCC-cCchhH-HH-hhcccCCCEEECCCC-cCCEeCHhH-ccCCCCCCEEECCCC-ccCEeCHHHh-CCCCC
Confidence            68999999994 665321 22 235889999999987 454322111 246789999999999 6764332222 35789


Q ss_pred             CcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCC
Q 026356          158 LESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGG  207 (240)
Q Consensus       158 L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~  207 (240)
                      |+.|+++++ .++..             ..-.+.+++.|+.++++.+.+.
T Consensus       104 L~~L~L~~N-~l~~~-------------~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          104 LRLLSLHGN-DISVV-------------PEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCEEECCSS-CCCBC-------------CTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCEEECCCC-CCCee-------------ChhhhhcCccccEEEeCCCCee
Confidence            999999994 55521             1113456778889999877664

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.39  E-value=3.1e-06  Score=64.75  Aligned_cols=132  Identities=14%  Similarity=0.142  Sum_probs=83.5

Q ss_pred             CceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcC
Q 026356           50 VREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNC  129 (240)
Q Consensus        50 L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~  129 (240)
                      -+.+++++ +.++..     ..   ....+++.|++++. .++..........+++|++|+++++ .++...-. ....+
T Consensus        10 ~~~l~~s~-~~l~~i-----p~---~~~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l   77 (192)
T 1w8a_A           10 GTTVDCTG-RGLKEI-----PR---DIPLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPN-AFEGA   77 (192)
T ss_dssp             TTEEECTT-SCCSSC-----CS---CCCTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTT-TTTTC
T ss_pred             CCEEEcCC-CCcCcC-----cc---CCCCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHh-HcCCc
Confidence            36778777 444321     11   12258999999995 6654222112235899999999987 55432111 22467


Q ss_pred             CcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCch
Q 026356          130 KHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDH  209 (240)
Q Consensus       130 ~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~  209 (240)
                      ++|+.|+++++ .++......+ ..+++|+.|+++++ .++...        +.     .+..++.|+.++++.+.+...
T Consensus        78 ~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~--------~~-----~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           78 SHIQELQLGEN-KIKEISNKMF-LGLHQLKTLNLYDN-QISCVM--------PG-----SFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             TTCCEEECCSC-CCCEECSSSS-TTCTTCCEEECCSS-CCCEEC--------TT-----SSTTCTTCCEEECTTCCBCCS
T ss_pred             ccCCEEECCCC-cCCccCHHHh-cCCCCCCEEECCCC-cCCeeC--------HH-----HhhcCCCCCEEEeCCCCccCc
Confidence            89999999999 6765332222 34789999999995 665410        11     335677889999988777644

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.37  E-value=7.1e-05  Score=64.98  Aligned_cols=13  Identities=15%  Similarity=0.084  Sum_probs=0.0

Q ss_pred             cccchhhhhhhhh
Q 026356          222 KHGKEKHIIETIK  234 (240)
Q Consensus       222 ~~L~~L~l~~c~~  234 (240)
                      ++|+.|++++++-
T Consensus       396 ~~L~~L~ls~N~l  408 (454)
T 1jl5_A          396 QNLKQLHVETNPL  408 (454)
T ss_dssp             -------------
T ss_pred             CcCCEEECCCCcC
Confidence            6777777777654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.34  E-value=2.2e-05  Score=58.95  Aligned_cols=132  Identities=14%  Similarity=0.142  Sum_probs=82.8

Q ss_pred             CCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHc
Q 026356           49 HVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKN  128 (240)
Q Consensus        49 ~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~  128 (240)
                      ..+.+++++ +.+....        ....++|+.|+++++ .++...-..+ ..+++|++|+++++ .++...- .....
T Consensus         8 ~~~~l~~~~-~~l~~~p--------~~~~~~l~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~-~~~~~   74 (177)
T 2o6r_A            8 SGTEIRCNS-KGLTSVP--------TGIPSSATRLELESN-KLQSLPHGVF-DKLTQLTKLSLSQN-QIQSLPD-GVFDK   74 (177)
T ss_dssp             ETTEEECCS-SCCSSCC--------TTCCTTCSEEECCSS-CCCCCCTTTT-TTCTTCSEEECCSS-CCCCCCT-TTTTT
T ss_pred             CCCEEEecC-CCCccCC--------CCCCCCCcEEEeCCC-cccEeCHHHh-cCcccccEEECCCC-cceEeCh-hHccC
Confidence            356677666 3343311        112378999999995 5653221112 35789999999987 5542211 12246


Q ss_pred             CCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCc
Q 026356          129 CKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGD  208 (240)
Q Consensus       129 ~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~  208 (240)
                      +++|+.|+++++ .++..... ....+++|+.|+++++ .++..         +    .-.+.+++.|+.++++.+.+..
T Consensus        75 l~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~---------~----~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           75 LTKLTILYLHEN-KLQSLPNG-VFDKLTQLKELALDTN-QLKSV---------P----DGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCSCC---------C----TTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCccCEEECCCC-CccccCHH-HhhCCcccCEEECcCC-cceEe---------C----HHHhcCCcccCEEEecCCCeec
Confidence            789999999999 67642221 1235789999999995 66521         0    0023567889999998887765


Q ss_pred             h
Q 026356          209 H  209 (240)
Q Consensus       209 ~  209 (240)
                      .
T Consensus       139 ~  139 (177)
T 2o6r_A          139 S  139 (177)
T ss_dssp             C
T ss_pred             c
Confidence            4

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.31  E-value=2.7e-05  Score=71.60  Aligned_cols=82  Identities=20%  Similarity=0.119  Sum_probs=36.0

Q ss_pred             CCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhC
Q 026356           76 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY  155 (240)
Q Consensus        76 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~  155 (240)
                      .+++|+.|+++++ .+..-. ..+. .+++|++|+|+++ .++  .+..-...+++|+.|+++++ .++.  +..-...+
T Consensus       222 ~l~~L~~L~Ls~n-~l~~l~-~~~~-~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N-~l~~--lp~~~~~l  292 (727)
T 4b8c_D          222 DDQLWHALDLSNL-QIFNIS-ANIF-KYDFLTRLYLNGN-SLT--ELPAEIKNLSNLRVLDLSHN-RLTS--LPAELGSC  292 (727)
T ss_dssp             CCCCCCEEECTTS-CCSCCC-GGGG-GCCSCSCCBCTTS-CCS--CCCGGGGGGTTCCEEECTTS-CCSS--CCSSGGGG
T ss_pred             cCCCCcEEECCCC-CCCCCC-hhhc-CCCCCCEEEeeCC-cCc--ccChhhhCCCCCCEEeCcCC-cCCc--cChhhcCC
Confidence            3455666666653 332100 0111 3555666666554 333  11111234556666666665 4441  11111235


Q ss_pred             CCCcEEeccCC
Q 026356          156 QELESLNLTRY  166 (240)
Q Consensus       156 ~~L~~L~l~~c  166 (240)
                      ++|+.|+|+++
T Consensus       293 ~~L~~L~L~~N  303 (727)
T 4b8c_D          293 FQLKYFYFFDN  303 (727)
T ss_dssp             TTCSEEECCSS
T ss_pred             CCCCEEECCCC
Confidence            55666666553

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.21  E-value=9.1e-05  Score=66.18  Aligned_cols=154  Identities=12%  Similarity=0.046  Sum_probs=80.2

Q ss_pred             EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCC
Q 026356           25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCP  104 (240)
Q Consensus        25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~  104 (240)
                      .|+++++...+   +.   ..-+++|+.|++++ +.++...         ..+++|+.|+++++ .++.  +..   ...
T Consensus        63 ~L~Ls~n~L~~---lp---~~l~~~L~~L~Ls~-N~l~~ip---------~~l~~L~~L~Ls~N-~l~~--ip~---l~~  120 (571)
T 3cvr_A           63 ELQLNRLNLSS---LP---DNLPPQITVLEITQ-NALISLP---------ELPASLEYLDACDN-RLST--LPE---LPA  120 (571)
T ss_dssp             EEECCSSCCSC---CC---SCCCTTCSEEECCS-SCCSCCC---------CCCTTCCEEECCSS-CCSC--CCC---CCT
T ss_pred             EEEeCCCCCCc---cC---HhHcCCCCEEECcC-CCCcccc---------cccCCCCEEEccCC-CCCC--cch---hhc
Confidence            47777665221   11   11235677777777 4454211         22467777777774 5543  111   122


Q ss_pred             CCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhh
Q 026356          105 ELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILL  184 (240)
Q Consensus       105 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~  184 (240)
                      +|++|+++++ .++.  +..   .+++|+.|+++++ .++..  .   ..+++|+.|++++| .++.  +       +. 
T Consensus       121 ~L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N-~l~~l--p---~~l~~L~~L~Ls~N-~L~~--l-------p~-  177 (571)
T 3cvr_A          121 SLKHLDVDNN-QLTM--LPE---LPALLEYINADNN-QLTML--P---ELPTSLEVLSVRNN-QLTF--L-------PE-  177 (571)
T ss_dssp             TCCEEECCSS-CCSC--CCC---CCTTCCEEECCSS-CCSCC--C---CCCTTCCEEECCSS-CCSC--C-------CC-
T ss_pred             CCCEEECCCC-cCCC--CCC---cCccccEEeCCCC-ccCcC--C---CcCCCcCEEECCCC-CCCC--c-------ch-
Confidence            6777777766 3432  111   4667777777777 55531  1   13567777887774 4433  0       00 


Q ss_pred             hhHHHhcCCccceeecccCCCCCchhHHHHHHH--hhcccccchhhhhhhh
Q 026356          185 MSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIE--TNTYKHGKEKHIIETI  233 (240)
Q Consensus       185 l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~--~~~~~~L~~L~l~~c~  233 (240)
                           +.  +.|+.++++.+.+.....   +..  ....+.|+.|+++++.
T Consensus       178 -----l~--~~L~~L~Ls~N~L~~lp~---~~~~L~~~~~~L~~L~Ls~N~  218 (571)
T 3cvr_A          178 -----LP--ESLEALDVSTNLLESLPA---VPVRNHHSEETEIFFRCRENR  218 (571)
T ss_dssp             -----CC--TTCCEEECCSSCCSSCCC---CC--------CCEEEECCSSC
T ss_pred             -----hh--CCCCEEECcCCCCCchhh---HHHhhhcccccceEEecCCCc
Confidence                 01  567788888777764311   110  0112223788777653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.18  E-value=0.00056  Score=55.05  Aligned_cols=62  Identities=29%  Similarity=0.359  Sum_probs=30.2

Q ss_pred             hcCCCCCEEEecCCCCCCH-HHHHHHHHcCCcCCEEeccCCCCCCHH-HHHHHHHhCCCCcEEeccCC
Q 026356          101 STCPELKVFSIYWNVRVTD-IGIQHLVKNCKHIIDLNLSGCKNLLDK-SLQLIADNYQELESLNLTRY  166 (240)
Q Consensus       101 ~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~L~~L~l~~c~~ltd~-~l~~l~~~~~~L~~L~l~~c  166 (240)
                      ..+++|++|+++++ .++. .++..+...+++|+.|+++++ .+++. .+..+. .. +|+.|+++++
T Consensus       167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~-~l-~L~~L~L~~N  230 (267)
T 3rw6_A          167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIK-GL-KLEELWLDGN  230 (267)
T ss_dssp             HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGT-TS-CCSEEECTTS
T ss_pred             hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcc-cC-CcceEEccCC
Confidence            45566666666655 3332 223333445566666666666 45432 122111 12 5666666663

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.03  E-value=5e-05  Score=69.86  Aligned_cols=111  Identities=15%  Similarity=0.125  Sum_probs=74.4

Q ss_pred             hcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHH
Q 026356           45 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH  124 (240)
Q Consensus        45 ~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~  124 (240)
                      ..++.|+.|+++++ .+....-. +     ..+++|++|+|+++ .++.- -..+ ..+++|+.|+|+++ .++  .+..
T Consensus       221 ~~l~~L~~L~Ls~n-~l~~l~~~-~-----~~l~~L~~L~Ls~N-~l~~l-p~~~-~~l~~L~~L~Ls~N-~l~--~lp~  287 (727)
T 4b8c_D          221 YDDQLWHALDLSNL-QIFNISAN-I-----FKYDFLTRLYLNGN-SLTEL-PAEI-KNLSNLRVLDLSHN-RLT--SLPA  287 (727)
T ss_dssp             -CCCCCCEEECTTS-CCSCCCGG-G-----GGCCSCSCCBCTTS-CCSCC-CGGG-GGGTTCCEEECTTS-CCS--SCCS
T ss_pred             ccCCCCcEEECCCC-CCCCCChh-h-----cCCCCCCEEEeeCC-cCccc-Chhh-hCCCCCCEEeCcCC-cCC--ccCh
Confidence            46788999999984 45421111 1     13589999999995 66621 1123 35899999999987 565  2222


Q ss_pred             HHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHH
Q 026356          125 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILL  172 (240)
Q Consensus       125 l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~  172 (240)
                      -...+++|+.|++++| .++.-.- . ...+++|+.|+|+++ .++..
T Consensus       288 ~~~~l~~L~~L~L~~N-~l~~lp~-~-~~~l~~L~~L~L~~N-~l~~~  331 (727)
T 4b8c_D          288 ELGSCFQLKYFYFFDN-MVTTLPW-E-FGNLCNLQFLGVEGN-PLEKQ  331 (727)
T ss_dssp             SGGGGTTCSEEECCSS-CCCCCCS-S-TTSCTTCCCEECTTS-CCCSH
T ss_pred             hhcCCCCCCEEECCCC-CCCccCh-h-hhcCCCccEEeCCCC-ccCCC
Confidence            2356789999999999 6763211 1 245889999999995 66643

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.72  E-value=0.0014  Score=52.79  Aligned_cols=84  Identities=21%  Similarity=0.373  Sum_probs=54.6

Q ss_pred             CCCccEEecCCCCCCcH-HHHHHHHhcCCCCCEEEecCCCCCCHH-HHHHHHHcCCcCCEEeccCCCCCCH------HHH
Q 026356           77 LQDLESLNLNGCQKISD-KGIEIISSTCPELKVFSIYWNVRVTDI-GIQHLVKNCKHIIDLNLSGCKNLLD------KSL  148 (240)
Q Consensus        77 ~~~L~~L~l~~c~~l~~-~~~~~l~~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~~~L~~L~l~~c~~ltd------~~l  148 (240)
                      +++|+.|++++ +.++. .++..+...+++|+.|+|+++ .+++. .+..+. .+ +|++|+++++ .++.      ...
T Consensus       169 l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~-~l-~L~~L~L~~N-pl~~~~~~~~~y~  243 (267)
T 3rw6_A          169 IPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIK-GL-KLEELWLDGN-SLCDTFRDQSTYI  243 (267)
T ss_dssp             CTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGT-TS-CCSEEECTTS-TTGGGCSSHHHHH
T ss_pred             CCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcc-cC-CcceEEccCC-cCccccCcchhHH
Confidence            48889999888 46654 123333446889999999877 56543 232222 23 8999999998 4653      223


Q ss_pred             HHHHHhCCCCcEEeccC
Q 026356          149 QLIADNYQELESLNLTR  165 (240)
Q Consensus       149 ~~l~~~~~~L~~L~l~~  165 (240)
                      ..+...+|+|+.||-..
T Consensus       244 ~~il~~~P~L~~LDg~~  260 (267)
T 3rw6_A          244 SAIRERFPKLLRLDGHE  260 (267)
T ss_dssp             HHHHHHCTTCCEESSCB
T ss_pred             HHHHHHCcccCeECCcC
Confidence            34556789999988543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=96.65  E-value=6.4e-06  Score=68.98  Aligned_cols=32  Identities=3%  Similarity=0.057  Sum_probs=20.6

Q ss_pred             EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCC
Q 026356           25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQ   59 (240)
Q Consensus        25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~   59 (240)
                      .|+|++|.. ..  +..-.+..+++|++|+++++.
T Consensus        34 ~L~Ls~N~i-~~--i~~~~f~~l~~L~~L~Ls~N~   65 (350)
T 4ay9_X           34 ELRFVLTKL-RV--IQKGAFSGFGDLEKIEISQND   65 (350)
T ss_dssp             EEEEESCCC-SE--ECTTSSTTCTTCCEEEEECCT
T ss_pred             EEEccCCcC-CC--cCHHHHcCCCCCCEEECcCCC
Confidence            488888873 21  222223478889999999853

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.62  E-value=0.00014  Score=54.40  Aligned_cols=83  Identities=16%  Similarity=0.163  Sum_probs=43.7

Q ss_pred             CCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCC
Q 026356           78 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE  157 (240)
Q Consensus        78 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~  157 (240)
                      ++|+.|++++. .++...-..+ ..+++|++|+++++ .++... ......+++|+.|+++++ .++...-. ....+++
T Consensus        30 ~~l~~L~L~~N-~i~~~~~~~~-~~l~~L~~L~Ls~N-~l~~l~-~~~f~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~  103 (170)
T 3g39_A           30 TTTQVLYLYDN-QITKLEPGVF-DRLTQLTRLDLDNN-QLTVLP-AGVFDKLTQLTQLSLNDN-QLKSIPRG-AFDNLKS  103 (170)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTT-TTCTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTT
T ss_pred             CCCcEEEcCCC-cCCccChhhh-cCcccCCEEECCCC-CcCccC-hhhccCCCCCCEEECCCC-ccCEeCHH-HhcCCCC
Confidence            55666666663 4433211111 13666777777765 343211 111245677788888777 55532111 1234678


Q ss_pred             CcEEeccCC
Q 026356          158 LESLNLTRY  166 (240)
Q Consensus       158 L~~L~l~~c  166 (240)
                      |+.|+++++
T Consensus       104 L~~L~L~~N  112 (170)
T 3g39_A          104 LTHIWLLNN  112 (170)
T ss_dssp             CCEEECCSS
T ss_pred             CCEEEeCCC
Confidence            888888874

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.50  E-value=0.00016  Score=54.25  Aligned_cols=60  Identities=18%  Similarity=0.188  Sum_probs=30.5

Q ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCC
Q 026356          103 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY  166 (240)
Q Consensus       103 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c  166 (240)
                      +++|+.|+++++ .++.-. ......+++|+.|+++++ .++...- .....+++|+.|+++++
T Consensus        56 l~~L~~L~Ls~N-~l~~i~-~~~~~~l~~L~~L~L~~N-~l~~l~~-~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           56 LVNLQQLYFNSN-KLTAIP-TGVFDKLTQLTQLDLNDN-HLKSIPR-GAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             CTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSS
T ss_pred             CcCCCEEECCCC-CCCccC-hhHhCCcchhhEEECCCC-ccceeCH-HHhccccCCCEEEeCCC
Confidence            555666666554 333210 011234567777777776 4542111 11134677777777774

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.46  E-value=0.00019  Score=53.54  Aligned_cols=102  Identities=15%  Similarity=0.106  Sum_probs=64.0

Q ss_pred             eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356           24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC  103 (240)
Q Consensus        24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~  103 (240)
                      +.++++++....      +...-.++|+.|++++ +.+....-..     ...+++|+.|++++. .++...- .....+
T Consensus        12 ~~l~~s~n~l~~------ip~~~~~~l~~L~L~~-N~i~~~~~~~-----~~~l~~L~~L~Ls~N-~l~~l~~-~~f~~l   77 (170)
T 3g39_A           12 TTVDCSGKSLAS------VPTGIPTTTQVLYLYD-NQITKLEPGV-----FDRLTQLTRLDLDNN-QLTVLPA-GVFDKL   77 (170)
T ss_dssp             TEEECTTSCCSS------CCSCCCTTCSEEECCS-SCCCCCCTTT-----TTTCTTCSEEECCSS-CCCCCCT-TTTTTC
T ss_pred             CEEEeCCCCcCc------cCccCCCCCcEEEcCC-CcCCccChhh-----hcCcccCCEEECCCC-CcCccCh-hhccCC
Confidence            357777776321      1111246899999998 5565432211     245689999999994 6653221 112358


Q ss_pred             CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCC
Q 026356          104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCK  141 (240)
Q Consensus       104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~  141 (240)
                      ++|++|+++++ .++...- .....+++|+.|++++++
T Consensus        78 ~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           78 TQLTQLSLNDN-QLKSIPR-GAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             TTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC
T ss_pred             CCCCEEECCCC-ccCEeCH-HHhcCCCCCCEEEeCCCC
Confidence            89999999987 4542111 123467899999999984

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.17  E-value=0.00062  Score=51.00  Aligned_cols=102  Identities=14%  Similarity=0.158  Sum_probs=64.2

Q ss_pred             eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356           24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC  103 (240)
Q Consensus        24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~  103 (240)
                      +.++++++....      +...-.++|+.|++++ +.+....-..     ...+++|+.|++++. .++.-.- .+...+
T Consensus        15 ~~l~~~~n~l~~------iP~~~~~~L~~L~Ls~-N~l~~~~~~~-----~~~l~~L~~L~Ls~N-~l~~i~~-~~~~~l   80 (174)
T 2r9u_A           15 TLVNCQNIRLAS------VPAGIPTDKQRLWLNN-NQITKLEPGV-----FDHLVNLQQLYFNSN-KLTAIPT-GVFDKL   80 (174)
T ss_dssp             SEEECCSSCCSS------CCSCCCTTCSEEECCS-SCCCCCCTTT-----TTTCTTCCEEECCSS-CCCCCCT-TTTTTC
T ss_pred             cEEEeCCCCCCc------cCCCcCCCCcEEEeCC-CCccccCHHH-----hcCCcCCCEEECCCC-CCCccCh-hHhCCc
Confidence            457787776311      1111237899999998 5565432111     245689999999994 6654211 112358


Q ss_pred             CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCC
Q 026356          104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCK  141 (240)
Q Consensus       104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~  141 (240)
                      ++|++|+++++ .++... ......+++|+.|++++++
T Consensus        81 ~~L~~L~L~~N-~l~~l~-~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           81 TQLTQLDLNDN-HLKSIP-RGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             TTCCEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSSC
T ss_pred             chhhEEECCCC-ccceeC-HHHhccccCCCEEEeCCCC
Confidence            89999999987 454211 1123467899999999994

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.07  E-value=0.0004  Score=57.36  Aligned_cols=36  Identities=8%  Similarity=-0.098  Sum_probs=19.4

Q ss_pred             HhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhh
Q 026356          189 IYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKH  228 (240)
Q Consensus       189 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~  228 (240)
                      .+.+|+.|+.++++.+.+....  ...+  .+|++|+.++
T Consensus       292 aF~~c~~L~~l~l~~n~i~~I~--~~aF--~~~~~L~~ly  327 (329)
T 3sb4_A          292 AFMGCDNLRYVLATGDKITTLG--DELF--GNGVPSKLIY  327 (329)
T ss_dssp             TTTTCTTEEEEEECSSCCCEEC--TTTT--CTTCCCCEEE
T ss_pred             hhhCCccCCEEEeCCCccCccc--hhhh--cCCcchhhhc
Confidence            4566777777776555444331  1122  4566666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=95.31  E-value=0.0016  Score=53.76  Aligned_cols=102  Identities=18%  Similarity=0.265  Sum_probs=57.0

Q ss_pred             CCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCC--CCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHH
Q 026356           48 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGC--QKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL  125 (240)
Q Consensus        48 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c--~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l  125 (240)
                      .+++.+.+.+  .+....+..+...|    ++|+.++++++  ..+.+.++    ..|++|++|++.++  ++.-+-.. 
T Consensus       202 ~~~~~l~~~~--~l~~~~~~~l~~~~----~~L~~l~L~~n~i~~I~~~aF----~~~~~L~~l~l~~n--i~~I~~~a-  268 (329)
T 3sb4_A          202 RDINFLTIEG--KLDNADFKLIRDYM----PNLVSLDISKTNATTIPDFTF----AQKKYLLKIKLPHN--LKTIGQRV-  268 (329)
T ss_dssp             GGCSEEEEEE--CCCHHHHHHHHHHC----TTCCEEECTTBCCCEECTTTT----TTCTTCCEEECCTT--CCEECTTT-
T ss_pred             cccceEEEee--eecHHHHHHHHHhc----CCCeEEECCCCCcceecHhhh----hCCCCCCEEECCcc--cceehHHH-
Confidence            3455555554  36666666666555    78888888773  22233222    24778888888653  32211111 


Q ss_pred             HHcCCcCC-EEeccCCCCCCHHHHHHHHHhCCCCcEEeccC
Q 026356          126 VKNCKHII-DLNLSGCKNLLDKSLQLIADNYQELESLNLTR  165 (240)
Q Consensus       126 ~~~~~~L~-~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~  165 (240)
                      ..+|++|+ .+++.+  .++.-+-. .+.+|++|+.+++..
T Consensus       269 F~~~~~L~~~l~l~~--~l~~I~~~-aF~~c~~L~~l~l~~  306 (329)
T 3sb4_A          269 FSNCGRLAGTLELPA--SVTAIEFG-AFMGCDNLRYVLATG  306 (329)
T ss_dssp             TTTCTTCCEEEEECT--TCCEECTT-TTTTCTTEEEEEECS
T ss_pred             hhCChhccEEEEEcc--cceEEchh-hhhCCccCCEEEeCC
Confidence            24677788 887765  23321111 113578888888765

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=95.19  E-value=0.0015  Score=54.22  Aligned_cols=63  Identities=19%  Similarity=0.294  Sum_probs=32.0

Q ss_pred             hcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCC
Q 026356           45 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWN  114 (240)
Q Consensus        45 ~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~  114 (240)
                      ..+.+|+.|+|++.+.+....-..     ...+++|+.|+|++. .++...-..+ ..+++|+.|+|+++
T Consensus        28 ~~~~~L~~L~l~~~n~l~~~~~~~-----~~~l~~L~~L~l~~N-~l~~~~~~~~-~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           28 PGAENLTELYIENQQHLQHLELRD-----LRGLGELRNLTIVKS-GLRFVAPDAF-HFTPRLSRLNLSFN   90 (347)
T ss_dssp             CSCSCCSEEECCSCSSCCEECGGG-----SCSCCCCSEEECCSS-CCCEECTTGG-GSCSCCCEEECCSS
T ss_pred             CCCCCeeEEEccCCCCCCCcChhH-----hccccCCCEEECCCC-ccceeCHHHh-cCCcCCCEEeCCCC
Confidence            356667777777434444321111     234566777777763 4443111111 23666666666655

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=95.12  E-value=0.00016  Score=60.45  Aligned_cols=59  Identities=17%  Similarity=0.208  Sum_probs=28.2

Q ss_pred             CeEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCC
Q 026356           23 PKVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGC   88 (240)
Q Consensus        23 ~~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c   88 (240)
                      .+.|+|++|...+.  +..-.+..+++++++.+..++++....-.     ....+++|+.|+++++
T Consensus        56 L~~L~Ls~N~i~~~--i~~~~f~~L~~l~~~l~~~~N~l~~l~~~-----~f~~l~~L~~L~l~~n  114 (350)
T 4ay9_X           56 LEKIEISQNDVLEV--IEADVFSNLPKLHEIRIEKANNLLYINPE-----AFQNLPNLQYLLISNT  114 (350)
T ss_dssp             CCEEEEECCTTCCE--ECTTSBCSCTTCCEEEEEEETTCCEECTT-----SBCCCTTCCEEEEEEE
T ss_pred             CCEEECcCCCCCCc--cChhHhhcchhhhhhhcccCCcccccCch-----hhhhcccccccccccc
Confidence            33488888874331  11111235556555444433444332111     1244567777777663

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=94.76  E-value=0.0038  Score=51.63  Aligned_cols=85  Identities=18%  Similarity=0.162  Sum_probs=48.0

Q ss_pred             CCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhC
Q 026356           76 SLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNY  155 (240)
Q Consensus        76 ~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~  155 (240)
                      .+++|+.|+|++.+.++...-..+ ..+++|+.|+|+++ .++...-. ....+++|+.|+++++ .++...-. +....
T Consensus        29 ~~~~L~~L~l~~~n~l~~~~~~~~-~~l~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~~~~-~~~~~  103 (347)
T 2ifg_A           29 GAENLTELYIENQQHLQHLELRDL-RGLGELRNLTIVKS-GLRFVAPD-AFHFTPRLSRLNLSFN-ALESLSWK-TVQGL  103 (347)
T ss_dssp             SCSCCSEEECCSCSSCCEECGGGS-CSCCCCSEEECCSS-CCCEECTT-GGGSCSCCCEEECCSS-CCSCCCST-TTCSC
T ss_pred             CCCCeeEEEccCCCCCCCcChhHh-ccccCCCEEECCCC-ccceeCHH-HhcCCcCCCEEeCCCC-ccceeCHH-HcccC
Confidence            346788888875345543211112 24778888888876 45432111 2246778888888888 56532111 11122


Q ss_pred             CCCcEEeccCC
Q 026356          156 QELESLNLTRY  166 (240)
Q Consensus       156 ~~L~~L~l~~c  166 (240)
                       .|+.|++.++
T Consensus       104 -~L~~l~l~~N  113 (347)
T 2ifg_A          104 -SLQELVLSGN  113 (347)
T ss_dssp             -CCCEEECCSS
T ss_pred             -CceEEEeeCC
Confidence             3888888874

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=91.02  E-value=0.00075  Score=57.57  Aligned_cols=12  Identities=17%  Similarity=0.108  Sum_probs=6.3

Q ss_pred             hCCCCcEEeccC
Q 026356          154 NYQELESLNLTR  165 (240)
Q Consensus       154 ~~~~L~~L~l~~  165 (240)
                      +|++|+.+.+.+
T Consensus       269 ~c~~L~~l~l~~  280 (401)
T 4fdw_A          269 YCPELAEVTTYG  280 (401)
T ss_dssp             TCTTCCEEEEES
T ss_pred             CCCCCCEEEeCC
Confidence            355555555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	240
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.003

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 1e-05
 Identities = 15/92 (16%), Positives = 40/92 (43%), Gaps = 10/92 (10%)

Query: 79  DLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL---VKNCKHIIDL 135
           D++SL++  C+++SD     +     + +V  +     +T+   + +   ++    + +L
Sbjct: 3   DIQSLDIQ-CEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAEL 60

Query: 136 NLSGCKNLLDKSLQLIAD----NYQELESLNL 163
           NL     L D  +  +         +++ L+L
Sbjct: 61  NLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 8e-04
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 9/74 (12%)

Query: 74  LGSLQDLESLNLNGCQKISDKGIEIISS---TCPELKVFSIYWNVRVTDIGIQHLVK--- 127
           L  LQ  + + L+ C  +++   + ISS     P L   ++  N  + D+G+  +++   
Sbjct: 23  LPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQ 80

Query: 128 -NCKHIIDLNLSGC 140
                I  L+L  C
Sbjct: 81  TPSCKIQKLSLQNC 94

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 6e-04
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 73  CLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHI 132
               L  L+ L+L+ C  I  + +  +    P LK   ++    V D  +Q L +   H+
Sbjct: 195 EFFQLNYLQHLSLSRCYDIIPETLLELGE-IPTLKTLQVFGI--VPDGTLQLLKEALPHL 251

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.003
 Identities = 12/65 (18%), Positives = 29/65 (44%), Gaps = 7/65 (10%)

Query: 44  IPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC 103
             +  +++ ++L    DI    L       LG +  L++L + G   + D  ++++    
Sbjct: 196 FFQLNYLQHLSLSRCYDIIPETL-----LELGEIPTLKTLQVFGI--VPDGTLQLLKEAL 248

Query: 104 PELKV 108
           P L++
Sbjct: 249 PHLQI 253

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	240
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.88
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.88
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.54
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.53
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.46
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.42
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	99.31
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	99.28
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	99.21
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	99.16
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.48
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.47
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.46
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.42
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.42
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.31
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.3
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.2
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.2
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.19
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.03
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.01
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.95
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.87
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.83
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.78
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.7
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.62
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.53
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.42
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.35
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.18
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	96.76
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	96.73
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.14
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	95.62
d2ifga3	156	High affinity nerve growth factor receptor, N-term	95.53
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	95.47
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	95.31
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	95.18
d2ifga3	156	High affinity nerve growth factor receptor, N-term	95.11
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	92.86

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.6e-22  Score=163.27  Aligned_cols=184  Identities=19%  Similarity=0.283  Sum_probs=147.0

Q ss_pred             eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356           24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC  103 (240)
Q Consensus        24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~  103 (240)
                      +.|++++|. ++...+..+. .++++|++|++++| .+++.++..++.     +++|++|++++|..+++.++..++..|
T Consensus        49 ~~LdLs~~~-i~~~~l~~l~-~~c~~L~~L~L~~~-~l~~~~~~~l~~-----~~~L~~L~Ls~c~~itd~~l~~l~~~~  120 (284)
T d2astb2          49 QHMDLSNSV-IEVSTLHGIL-SQCSKLQNLSLEGL-RLSDPIVNTLAK-----NSNLVRLNLSGCSGFSEFALQTLLSSC  120 (284)
T ss_dssp             CEEECTTCE-ECHHHHHHHH-TTBCCCSEEECTTC-BCCHHHHHHHTT-----CTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred             CEEECCCCc-cCHHHHHHHH-HhCCCccccccccc-CCCcHHHHHHhc-----CCCCcCccccccccccccccchhhHHH
Confidence            349999885 6677777764 58999999999997 589988887753     489999999999999999999999999


Q ss_pred             CCCCEEEecCCCCCCHHHHHHH-HHcCCcCCEEeccCC-CCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhC
Q 026356          104 PELKVFSIYWNVRVTDIGIQHL-VKNCKHIIDLNLSGC-KNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNN  181 (240)
Q Consensus       104 ~~L~~L~l~~~~~l~~~~~~~l-~~~~~~L~~L~l~~c-~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~  181 (240)
                      ++|++|++++|..+++.++... ...+++|++|++++| ..+++.++..++.++|+|++|++++|..+++.++..+    
T Consensus       121 ~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l----  196 (284)
T d2astb2         121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF----  196 (284)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG----
T ss_pred             HhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhh----
Confidence            9999999999989999988664 455689999999987 4689999999998999999999999988998766543    


Q ss_pred             hhhhhHHHhcCCccceeecccCC-CCCchhHHHHHHHhhcccccchhhhhhh
Q 026356          182 ILLMSEFIYHGIRFFQAVQINSS-NGGDHLAFAYIIETNTYKHGKEKHIIET  232 (240)
Q Consensus       182 ~~~l~~l~~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~c  232 (240)
                               ..++.|+.++++++ .+++. ++..+   ..+|+|+.|++++|
T Consensus       197 ---------~~~~~L~~L~L~~C~~i~~~-~l~~L---~~~~~L~~L~l~~~  235 (284)
T d2astb2         197 ---------FQLNYLQHLSLSRCYDIIPE-TLLEL---GEIPTLKTLQVFGI  235 (284)
T ss_dssp             ---------GGCTTCCEEECTTCTTCCGG-GGGGG---GGCTTCCEEECTTS
T ss_pred             ---------cccCcCCEEECCCCCCCChH-HHHHH---hcCCCCCEEeeeCC
Confidence                     23566777777654 44444 33332   35778888887776

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=7e-22  Score=160.69  Aligned_cols=178  Identities=18%  Similarity=0.325  Sum_probs=151.5

Q ss_pred             eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHH-HHhc
Q 026356           24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEI-ISST  102 (240)
Q Consensus        24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-l~~~  102 (240)
                      +.|++++|. +++..+..++  ++++|++|++++|..+++.++..++..|    ++|++|++++|..+++.++.. ++..
T Consensus        74 ~~L~L~~~~-l~~~~~~~l~--~~~~L~~L~Ls~c~~itd~~l~~l~~~~----~~L~~L~ls~c~~~~~~~~~~~~~~~  146 (284)
T d2astb2          74 QNLSLEGLR-LSDPIVNTLA--KNSNLVRLNLSGCSGFSEFALQTLLSSC----SRLDELNLSWCFDFTEKHVQVAVAHV  146 (284)
T ss_dssp             SEEECTTCB-CCHHHHHHHT--TCTTCSEEECTTCBSCCHHHHHHHHHHC----TTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             ccccccccC-CCcHHHHHHh--cCCCCcCccccccccccccccchhhHHH----Hhccccccccccccccccchhhhccc
Confidence            349999996 7788888765  7899999999999999999999999888    999999999999999998865 5556


Q ss_pred             CCCCCEEEecCC-CCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhC
Q 026356          103 CPELKVFSIYWN-VRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNN  181 (240)
Q Consensus       103 ~~~L~~L~l~~~-~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~  181 (240)
                      +++|++|++++| ..+++.++..++..||+|++|++++|..++|.++..+.. +++|++|++++|..+++.++..+    
T Consensus       147 ~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~-~~~L~~L~L~~C~~i~~~~l~~L----  221 (284)
T d2astb2         147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETLLEL----  221 (284)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG-CTTCCEEECTTCTTCCGGGGGGG----
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcc-cCcCCEEECCCCCCCChHHHHHH----
Confidence            789999999987 469999999999999999999999999999999888864 89999999999999999876433    


Q ss_pred             hhhhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccch
Q 026356          182 ILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKE  226 (240)
Q Consensus       182 ~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~  226 (240)
                               ..+++|+.+++..+ ..|. ++..+.  ..+|+|+.
T Consensus       222 ---------~~~~~L~~L~l~~~-~~d~-~l~~l~--~~lp~L~i  253 (284)
T d2astb2         222 ---------GEIPTLKTLQVFGI-VPDG-TLQLLK--EALPHLQI  253 (284)
T ss_dssp             ---------GGCTTCCEEECTTS-SCTT-CHHHHH--HHSTTSEE
T ss_pred             ---------hcCCCCCEEeeeCC-CCHH-HHHHHH--HhCccccc
Confidence                     34678889988766 4554 566666  67888774

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.1e-13  Score=113.69  Aligned_cols=191  Identities=16%  Similarity=0.158  Sum_probs=141.6

Q ss_pred             CeEEeccCCCCCChHHHHHh--hhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHH
Q 026356           23 PKVIDLREMNNAGNRLVAAL--SIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS  100 (240)
Q Consensus        23 ~~~L~l~~~~~~~~~~l~~l--~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~  100 (240)
                      .+.+++++|.. ........  .....+.++.+++++ +.+++.++..++.......+.|+.+++++| .+++.++..++
T Consensus       257 l~~l~l~~n~i-~~~~~~~~~~~l~~~~~l~~l~l~~-n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~-~l~~~~~~~l~  333 (460)
T d1z7xw1         257 LRTLWIWECGI-TAKGCGDLCRVLRAKESLKELSLAG-NELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFS  333 (460)
T ss_dssp             CCEEECTTSCC-CHHHHHHHHHHHHHCTTCCEEECTT-CCCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHH
T ss_pred             ccccccccccc-ccccccccccccccccccccccccc-ccccccccchhhcccccccccccccccccc-chhhhhhhhcc
Confidence            44588888873 33332222  234678899999998 679999999998877666678999999997 78877766655


Q ss_pred             ---hcCCCCCEEEecCCCCCCHHHHHHHHH----cCCcCCEEeccCCCCCCHHHHHHHHH---hCCCCcEEeccCCCCCC
Q 026356          101 ---STCPELKVFSIYWNVRVTDIGIQHLVK----NCKHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTRYVNMI  170 (240)
Q Consensus       101 ---~~~~~L~~L~l~~~~~l~~~~~~~l~~----~~~~L~~L~l~~c~~ltd~~l~~l~~---~~~~L~~L~l~~c~~it  170 (240)
                         ..+++|++|+++++ .+++.++..+++    ..+.|++|++++| .+++.++..++.   .+++|++|++++ +.++
T Consensus       334 ~~~~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~-N~i~  410 (460)
T d1z7xw1         334 SVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSN-NCLG  410 (460)
T ss_dssp             HHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCS-SSCC
T ss_pred             cccccccchhhhheeee-cccCcccchhhhhhhcccCCCCEEECCCC-CCChHHHHHHHHHHhcCCCCCEEECCC-CcCC
Confidence               46789999999987 799999888765    3457999999999 899988877764   479999999999 4899


Q ss_pred             HHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchh
Q 026356          171 LLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEK  227 (240)
Q Consensus       171 ~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L  227 (240)
                      +.|+..++..    ++    .....|+.+.+..+...+...-.........|+|+.|
T Consensus       411 ~~g~~~l~~~----l~----~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~  459 (460)
T d1z7xw1         411 DAGILQLVES----VR----QPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI  459 (460)
T ss_dssp             HHHHHHHHHH----HT----STTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             HHHHHHHHHH----HH----hCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence            9999888764    21    2334588888887777765332222222566777765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.53  E-value=3.2e-13  Score=111.49  Aligned_cols=195  Identities=12%  Similarity=0.099  Sum_probs=135.0

Q ss_pred             EEeccCCCCCChHHHHHh--hhhcCCCCceEeccCCCCCcHHHHHHHHHHcc--------CCCCCccEEecCCCCCCcHH
Q 026356           25 VIDLREMNNAGNRLVAAL--SIPRYRHVREINLEFAQDIEDRHLELLKTKCL--------GSLQDLESLNLNGCQKISDK   94 (240)
Q Consensus        25 ~L~l~~~~~~~~~~l~~l--~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~--------~~~~~L~~L~l~~c~~l~~~   94 (240)
                      .|++++|. ++..++..+  .+..+++|++|++++| .+++.+...++..+.        ...+.|+.+.+++ ..+++.
T Consensus        97 ~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~-n~i~~~  173 (344)
T d2ca6a1          97 TVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR-NRLENG  173 (344)
T ss_dssp             EEECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS-SCCTGG
T ss_pred             cccccccc-cccccccchhhhhcccccchheecccc-cccccccccccccccccccccccccCcccceeeccc-cccccc
Confidence            47787775 333333333  1336678888888874 577766666554331        2346788888887 477776


Q ss_pred             HHHHHHh---cCCCCCEEEecCCCCCCHHHHHHH----HHcCCcCCEEeccCCCCCCHHHHHHHHH---hCCCCcEEecc
Q 026356           95 GIEIISS---TCPELKVFSIYWNVRVTDIGIQHL----VKNCKHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLT  164 (240)
Q Consensus        95 ~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l----~~~~~~L~~L~l~~c~~ltd~~l~~l~~---~~~~L~~L~l~  164 (240)
                      +...++.   .++.|++|++++| .+++.++..+    ...+++|+.|+++++ .+++.+...++.   .+++|++|+++
T Consensus       174 ~~~~l~~~l~~~~~L~~L~L~~n-~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~L~~~l~~~~~L~~L~Ls  251 (344)
T d2ca6a1         174 SMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLN  251 (344)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred             ccccccchhhhhhhhcccccccc-cccccccccchhhhhcchhhhcccccccc-cccccccccccccccccccchhhhhh
Confidence            6665543   5778999999887 6888876553    245778999999988 788888777763   57889999999


Q ss_pred             CCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCchhHHHHHHHh--hcccccchhhhhhhh
Q 026356          165 RYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIET--NTYKHGKEKHIIETI  233 (240)
Q Consensus       165 ~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~c~  233 (240)
                      +| .+++.|+..++..    +.   ....+.|+.++++++.+.+. ++..+...  ..++.|+.|++.++.
T Consensus       252 ~n-~i~~~g~~~l~~~----l~---~~~~~~L~~L~ls~N~i~~~-~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         252 DC-LLSARGAAAVVDA----FS---KLENIGLQTLRLQYNEIELD-AVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             TC-CCCHHHHHHHHHH----HH---TCSSCCCCEEECCSSCCBHH-HHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             cC-ccCchhhHHHHHH----hh---hccCCCCCEEECCCCcCChH-HHHHHHHHHHccCCCCCEEECCCCc
Confidence            96 7999988888754    11   12335688999999988876 44444432  257889999987654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.46  E-value=2.1e-12  Score=106.39  Aligned_cols=117  Identities=11%  Similarity=0.105  Sum_probs=60.9

Q ss_pred             CCCCEEEecCCCCCCHHHHHHHH---HcCCcCCEEeccCCCCCCHHHHHH-HH---HhCCCCcEEeccCCCCCCHHHHHH
Q 026356          104 PELKVFSIYWNVRVTDIGIQHLV---KNCKHIIDLNLSGCKNLLDKSLQL-IA---DNYQELESLNLTRYVNMILLGLFY  176 (240)
Q Consensus       104 ~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~c~~ltd~~l~~-l~---~~~~~L~~L~l~~c~~it~~~~~~  176 (240)
                      +.|+.+.++++ .+++.++..++   ..++.|++|++++| .+++.++.. +.   ..+++|+.|+++++ .+++.|...
T Consensus       158 ~~L~~l~l~~n-~i~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~  234 (344)
T d2ca6a1         158 PPLRSIICGRN-RLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSA  234 (344)
T ss_dssp             CCCCEEECCSS-CCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHH
T ss_pred             cccceeecccc-cccccccccccchhhhhhhhcccccccc-cccccccccchhhhhcchhhhcccccccc-ccccccccc
Confidence            34444444433 34443333322   33445666666665 555554433 21   13555666666653 455555555


Q ss_pred             HHHhChhhhhHHHhcCCccceeecccCCCCCchhHHHHHHHh---hcccccchhhhhhhh
Q 026356          177 IWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIET---NTYKHGKEKHIIETI  233 (240)
Q Consensus       177 l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~---~~~~~L~~L~l~~c~  233 (240)
                      ++..         +..++.|+.++++++.+.+. +...+...   ...+.|++|+++++.
T Consensus       235 L~~~---------l~~~~~L~~L~Ls~n~i~~~-g~~~l~~~l~~~~~~~L~~L~ls~N~  284 (344)
T d2ca6a1         235 LAIA---------LKSWPNLRELGLNDCLLSAR-GAAAVVDAFSKLENIGLQTLRLQYNE  284 (344)
T ss_dssp             HHHH---------GGGCTTCCEEECTTCCCCHH-HHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             cccc---------ccccccchhhhhhcCccCch-hhHHHHHHhhhccCCCCCEEECCCCc
Confidence            4432         34466777777777777766 33333321   224567777777764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.5e-12  Score=110.22  Aligned_cols=123  Identities=18%  Similarity=0.337  Sum_probs=84.6

Q ss_pred             CCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHH---hcCCCCCEEEecCCCCCCHHHHHH
Q 026356           48 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIIS---STCPELKVFSIYWNVRVTDIGIQH  124 (240)
Q Consensus        48 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~---~~~~~L~~L~l~~~~~l~~~~~~~  124 (240)
                      ++|+.|++++ +++++.++..+...+    ++++.|++++| .+++.+++.++   ..+++|++|+++++ .+++.++..
T Consensus         2 ~~l~~ld~~~-~~i~~~~~~~l~~~l----~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~   74 (460)
T d1z7xw1           2 LDIQSLDIQC-EELSDARWAELLPLL----QQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHC   74 (460)
T ss_dssp             EEEEEEEEES-CCCCHHHHHHHHHHH----TTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHH
T ss_pred             CCCCEEEeeC-CcCChHHHHHHHHhC----CCCCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHH
Confidence            3567777765 677777777776665    77777777776 67777776665   35777777777766 577777777


Q ss_pred             HHHcC----CcCCEEeccCCCCCCHHHHHHHHH---hCCCCcEEeccCCCCCCHHHHHHHHH
Q 026356          125 LVKNC----KHIIDLNLSGCKNLLDKSLQLIAD---NYQELESLNLTRYVNMILLGLFYIWS  179 (240)
Q Consensus       125 l~~~~----~~L~~L~l~~c~~ltd~~l~~l~~---~~~~L~~L~l~~c~~it~~~~~~l~~  179 (240)
                      +++.+    ++|++|++++| .+++.++..++.   .+++|++|+++++ .+++.++..+..
T Consensus        75 l~~~l~~~~~~L~~L~L~~n-~it~~~~~~l~~~l~~~~~L~~L~L~~N-~i~~~~~~~l~~  134 (460)
T d1z7xw1          75 VLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCE  134 (460)
T ss_dssp             HHHTTCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCCEEECCCC-Cccccccccccchhhccccccccccccc-cchhhhhhhhhh
Confidence            76543    36777777777 677776666554   3667777777774 677766665543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.31  E-value=8.2e-11  Score=87.03  Aligned_cols=126  Identities=15%  Similarity=0.209  Sum_probs=101.8

Q ss_pred             HHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHh---cCCCCCEEEecC
Q 026356           37 RLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS---TCPELKVFSIYW  113 (240)
Q Consensus        37 ~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~---~~~~L~~L~l~~  113 (240)
                      +.+..+. .+.++|++|+++++..+++.++..++..+ ...+.|++|++++| .+++.+...++.   ..++|++|++++
T Consensus         5 ~~l~~l~-~n~~~L~~L~L~~~~~i~~~~~~~l~~~L-~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~   81 (167)
T d1pgva_           5 SCINRLR-EDDTDLKEVNINNMKRVSKERIRSLIEAA-CNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVES   81 (167)
T ss_dssp             HHHHHHH-TTCSSCCEEECTTCCSSCHHHHHHHHHHH-TTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred             HHHHHHH-hCCCCCcEEEeCCCCCCCHHHHHHHHHHH-hhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeeh
Confidence            4455554 47799999999987779999999998876 66788999999996 899988876664   578899999999


Q ss_pred             CCCCCHHHHHHHHHcC---CcCCEEeccCC--CCCCHHHHHHHHH---hCCCCcEEeccCC
Q 026356          114 NVRVTDIGIQHLVKNC---KHIIDLNLSGC--KNLLDKSLQLIAD---NYQELESLNLTRY  166 (240)
Q Consensus       114 ~~~l~~~~~~~l~~~~---~~L~~L~l~~c--~~ltd~~l~~l~~---~~~~L~~L~l~~c  166 (240)
                      | .+++.|+..+++.+   +.|++|+++++  ..+++.+...++.   ..++|+.|++++.
T Consensus        82 n-~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          82 N-FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             S-BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             h-hcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            8 79999998887655   57999999876  2566777665554   4789999999874

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.28  E-value=2.3e-10  Score=84.38  Aligned_cols=126  Identities=16%  Similarity=0.161  Sum_probs=102.0

Q ss_pred             HHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHh---cCCCCCEEEecC
Q 026356           37 RLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS---TCPELKVFSIYW  113 (240)
Q Consensus        37 ~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~---~~~~L~~L~l~~  113 (240)
                      +.+..+. .+.+.|++|++++++.+++.++..++..+ ..+++|++|++++| .+++.++..++.   ..++++.+++++
T Consensus         7 ~~l~~~~-~~~~~L~~L~L~~~~~i~~~~~~~l~~al-~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~   83 (166)
T d1io0a_           7 ETLKRIQ-NNDPDLEEVNLNNIMNIPVPTLKACAEAL-KTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVES   83 (166)
T ss_dssp             HHHHHHH-TTCTTCCEEECTTCTTCCHHHHHHHHHHH-TTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred             HHHHHHH-hcCCCCcEEEcCCCCCCCHHHHHHHHHHH-hcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhcc
Confidence            3444443 47799999999987789999999999876 56789999999997 999998887765   578899999998


Q ss_pred             CCCCCHHHHHHHHH---cCCcCCEEeccCCC-CCCHHHHHHHHH---hCCCCcEEeccCC
Q 026356          114 NVRVTDIGIQHLVK---NCKHIIDLNLSGCK-NLLDKSLQLIAD---NYQELESLNLTRY  166 (240)
Q Consensus       114 ~~~l~~~~~~~l~~---~~~~L~~L~l~~c~-~ltd~~l~~l~~---~~~~L~~L~l~~c  166 (240)
                      + .+++.++..+++   ..++|+.++++.+. .+++.+...++.   .++.|++|++.+.
T Consensus        84 ~-~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          84 N-FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             S-CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             c-cccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            7 799999988875   44678887675432 788988877765   6889999999874

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.21  E-value=1.5e-10  Score=85.61  Aligned_cols=129  Identities=14%  Similarity=0.133  Sum_probs=98.3

Q ss_pred             HHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHh---cCCCCCEEEecCCCCCCHHHHHHHHH---cCCcCCEEec
Q 026356           64 RHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISS---TCPELKVFSIYWNVRVTDIGIQHLVK---NCKHIIDLNL  137 (240)
Q Consensus        64 ~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l  137 (240)
                      ..++.+..    +.++|++|+++++..+++.++..++.   ..++|++|++++| .+++.++..+++   ..+.|++|++
T Consensus         5 ~~l~~l~~----n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L   79 (167)
T d1pgva_           5 SCINRLRE----DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNV   79 (167)
T ss_dssp             HHHHHHHT----TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEEC
T ss_pred             HHHHHHHh----CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc-ccchhHHHHHhhhhhhcccccceee
Confidence            34555544    34999999999877899999887765   5677999999987 799988777654   5679999999


Q ss_pred             cCCCCCCHHHHHHHHHh---CCCCcEEeccCC--CCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCC
Q 026356          138 SGCKNLLDKSLQLIADN---YQELESLNLTRY--VNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGG  207 (240)
Q Consensus       138 ~~c~~ltd~~l~~l~~~---~~~L~~L~l~~c--~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~  207 (240)
                      ++| .+++.++..++..   .+.|++|+++++  ..+++.+...++..         +...+.|+.+++++....
T Consensus        80 ~~n-~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~---------L~~n~sL~~l~l~~~~~~  144 (167)
T d1pgva_          80 ESN-FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMA---------IEENESLLRVGISFASME  144 (167)
T ss_dssp             CSS-BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHH---------HHHCSSCCEEECCCCCHH
T ss_pred             ehh-hcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHH---------HHhCCCccEeeCcCCCch
Confidence            999 8999999888865   567999999875  24677777777653         233456777887665443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.16  E-value=4e-10  Score=83.06  Aligned_cols=123  Identities=17%  Similarity=0.100  Sum_probs=98.0

Q ss_pred             CCCCCccEEecCCCCCCcHHHHHHHHh---cCCCCCEEEecCCCCCCHHHHHHHHH---cCCcCCEEeccCCCCCCHHHH
Q 026356           75 GSLQDLESLNLNGCQKISDKGIEIISS---TCPELKVFSIYWNVRVTDIGIQHLVK---NCKHIIDLNLSGCKNLLDKSL  148 (240)
Q Consensus        75 ~~~~~L~~L~l~~c~~l~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~c~~ltd~~l  148 (240)
                      .+.+.|++|+++++..+++.++..++.   .+++|++|++++| .+++.++..+++   ..+.++.+++++| .++++++
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~-~~~~~g~   91 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGI   91 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccc-cccchhH
Confidence            445999999999977899999988886   5788999999998 899998877654   5679999999999 8999999


Q ss_pred             HHHHH---hCCCCcEEeccCC-CCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCc
Q 026356          149 QLIAD---NYQELESLNLTRY-VNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGD  208 (240)
Q Consensus       149 ~~l~~---~~~~L~~L~l~~c-~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~  208 (240)
                      ..++.   ..++|+.++|..+ +.+++.|...++..         +..++.|+.+++++.....
T Consensus        92 ~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~---------L~~n~~L~~L~l~~~~~~~  146 (166)
T d1io0a_          92 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM---------LEKNTTLLKFGYHFTQQGP  146 (166)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH---------HHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHH---------HHhCCCcCEEeCcCCCCcH
Confidence            88885   4678988777644 47899998888754         2336778888887665443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.48  E-value=6.4e-08  Score=73.57  Aligned_cols=160  Identities=18%  Similarity=0.209  Sum_probs=106.9

Q ss_pred             EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCC
Q 026356           25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCP  104 (240)
Q Consensus        25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~  104 (240)
                      .|++.++....-   .  ++..+++|++|+++++ .+++..  .     ...+++|+.|+++++ .+++  +..+ ..++
T Consensus        50 ~L~l~~~~i~~l---~--~l~~l~~L~~L~L~~n-~i~~l~--~-----~~~l~~L~~L~l~~n-~i~~--l~~l-~~l~  112 (210)
T d1h6ta2          50 QIIANNSDIKSV---Q--GIQYLPNVTKLFLNGN-KLTDIK--P-----LANLKNLGWLFLDEN-KVKD--LSSL-KDLK  112 (210)
T ss_dssp             EEECTTSCCCCC---T--TGGGCTTCCEEECCSS-CCCCCG--G-----GTTCTTCCEEECCSS-CCCC--GGGG-TTCT
T ss_pred             EEECcCCCCCCc---h--hHhhCCCCCEEeCCCc-cccCcc--c-----cccCccccccccccc-cccc--cccc-cccc
Confidence            378887764332   1  2347889999999984 565422  1     134588999999985 6664  2222 2478


Q ss_pred             CCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhh
Q 026356          105 ELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILL  184 (240)
Q Consensus       105 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~  184 (240)
                      +|+.|+++++. +.+  +.. ...+++++.++++++ .+++...   ...+++|+.++++++ .+++             
T Consensus       113 ~L~~L~l~~~~-~~~--~~~-l~~l~~l~~l~~~~n-~l~~~~~---~~~l~~L~~l~l~~n-~l~~-------------  170 (210)
T d1h6ta2         113 KLKSLSLEHNG-ISD--ING-LVHLPQLESLYLGNN-KITDITV---LSRLTKLDTLSLEDN-QISD-------------  170 (210)
T ss_dssp             TCCEEECTTSC-CCC--CGG-GGGCTTCCEEECCSS-CCCCCGG---GGGCTTCSEEECCSS-CCCC-------------
T ss_pred             ccccccccccc-ccc--ccc-ccccccccccccccc-ccccccc---ccccccccccccccc-cccc-------------
Confidence            89999998773 332  111 246788999999888 6765321   235889999999985 5543             


Q ss_pred             hhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhh
Q 026356          185 MSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIE  231 (240)
Q Consensus       185 l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  231 (240)
                      +.  .+.+++.|+.++++++.+.+..    .+  ..+++|+.|++++
T Consensus       171 i~--~l~~l~~L~~L~Ls~N~i~~l~----~l--~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         171 IV--PLAGLTKLQNLYLSKNHISDLR----AL--AGLKNLDVLELFS  209 (210)
T ss_dssp             CG--GGTTCTTCCEEECCSSCCCBCG----GG--TTCTTCSEEEEEE
T ss_pred             cc--cccCCCCCCEEECCCCCCCCCh----hh--cCCCCCCEEEccC
Confidence            11  2466788999999988887641    13  5788999988753

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.47  E-value=6.9e-08  Score=72.74  Aligned_cols=156  Identities=16%  Similarity=0.220  Sum_probs=90.8

Q ss_pred             EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCC
Q 026356           25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCP  104 (240)
Q Consensus        25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~  104 (240)
                      .|++.++....   +..  +..+++|++|+++++ .+++..  .     ...+++|++|+++++. +..-  ..+ ..++
T Consensus        44 ~L~l~~~~i~~---l~~--l~~l~nL~~L~Ls~N-~l~~~~--~-----l~~l~~L~~L~l~~n~-~~~~--~~l-~~l~  106 (199)
T d2omxa2          44 TLQADRLGIKS---IDG--VEYLNNLTQINFSNN-QLTDIT--P-----LKNLTKLVDILMNNNQ-IADI--TPL-ANLT  106 (199)
T ss_dssp             EEECTTSCCCC---CTT--GGGCTTCCEEECCSS-CCCCCG--G-----GTTCTTCCEEECCSSC-CCCC--GGG-TTCT
T ss_pred             EEECCCCCCCC---ccc--cccCCCcCcCccccc-cccCcc--c-----ccCCcccccccccccc-cccc--ccc-cccc
Confidence            37777766322   121  346778888888874 455421  1     2345778888887753 3221  112 2477


Q ss_pred             CCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhh
Q 026356          105 ELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILL  184 (240)
Q Consensus       105 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~  184 (240)
                      +|+.|+++++......+    ...+++|+.|+++++ .++..  ..+ ..+++|+.|++.+| .+++-            
T Consensus       107 ~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n-~l~~~--~~l-~~~~~L~~L~l~~n-~l~~l------------  165 (199)
T d2omxa2         107 NLTGLTLFNNQITDIDP----LKNLTNLNRLELSSN-TISDI--SAL-SGLTSLQQLNFSSN-QVTDL------------  165 (199)
T ss_dssp             TCSEEECCSSCCCCCGG----GTTCTTCSEEECCSS-CCCCC--GGG-TTCTTCSEEECCSS-CCCCC------------
T ss_pred             ccccccccccccccccc----cchhhhhHHhhhhhh-hhccc--ccc-cccccccccccccc-cccCC------------
Confidence            78888887764333222    235678888888877 45432  122 34777888888775 45441            


Q ss_pred             hhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchh
Q 026356          185 MSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEK  227 (240)
Q Consensus       185 l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L  227 (240)
                       .  .+.+++.|+.++++.+.+.+..    .+  ..+++|++|
T Consensus       166 -~--~l~~l~~L~~L~ls~N~i~~i~----~l--~~L~~L~~L  199 (199)
T d2omxa2         166 -K--PLANLTTLERLDISSNKVSDIS----VL--AKLTNLESL  199 (199)
T ss_dssp             -G--GGTTCTTCCEEECCSSCCCCCG----GG--GGCTTCSEE
T ss_pred             -c--cccCCCCCCEEECCCCCCCCCc----cc--cCCCCCCcC
Confidence             1  2356777888888887776641    12  456666654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=2e-08  Score=73.41  Aligned_cols=106  Identities=21%  Similarity=0.280  Sum_probs=56.7

Q ss_pred             cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHH
Q 026356           46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL  125 (240)
Q Consensus        46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l  125 (240)
                      +...+++|++++ +.|+..  ..+..    .+++|++|+++++ .++.-  ..+ ..+++|++|++++| .++.-. ..+
T Consensus        16 n~~~lr~L~L~~-n~I~~i--~~~~~----~l~~L~~L~Ls~N-~i~~l--~~~-~~l~~L~~L~ls~N-~i~~l~-~~~   82 (162)
T d1a9na_          16 NAVRDRELDLRG-YKIPVI--ENLGA----TLDQFDAIDFSDN-EIRKL--DGF-PLLRRLKTLLVNNN-RICRIG-EGL   82 (162)
T ss_dssp             CTTSCEEEECTT-SCCCSC--CCGGG----GTTCCSEEECCSS-CCCEE--CCC-CCCSSCCEEECCSS-CCCEEC-SCH
T ss_pred             CcCcCcEEECCC-CCCCcc--Ccccc----ccccCCEEECCCC-CCCcc--CCc-ccCcchhhhhcccc-cccCCC-ccc
Confidence            455677788877 445442  11212    2367777777774 55431  111 24666777777766 343211 112


Q ss_pred             HHcCCcCCEEeccCCCCCCHH-HHHHHHHhCCCCcEEeccCC
Q 026356          126 VKNCKHIIDLNLSGCKNLLDK-SLQLIADNYQELESLNLTRY  166 (240)
Q Consensus       126 ~~~~~~L~~L~l~~c~~ltd~-~l~~l~~~~~~L~~L~l~~c  166 (240)
                      ...+++|+.|++++| .+++- .+..+ ..+++|+.|++++|
T Consensus        83 ~~~l~~L~~L~L~~N-~i~~~~~l~~l-~~l~~L~~L~l~~N  122 (162)
T d1a9na_          83 DQALPDLTELILTNN-SLVELGDLDPL-ASLKSLTYLCILRN  122 (162)
T ss_dssp             HHHCTTCCEEECCSC-CCCCGGGGGGG-GGCTTCCEEECCSS
T ss_pred             cccccccccceeccc-ccccccccccc-ccccccchhhcCCC
Confidence            235667777777776 45432 12222 24667777777764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.42  E-value=5e-08  Score=73.53  Aligned_cols=149  Identities=14%  Similarity=0.142  Sum_probs=104.6

Q ss_pred             cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHH
Q 026356           46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL  125 (240)
Q Consensus        46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l  125 (240)
                      .++++++|+++++ .+++-  ..+     ..+++|++|+++++ .+++..  .+ ..+++|++|+++++......+    
T Consensus        38 ~l~~l~~L~l~~~-~i~~l--~~l-----~~l~nL~~L~Ls~N-~l~~~~--~l-~~l~~L~~L~l~~n~~~~~~~----  101 (199)
T d2omxa2          38 DLDQVTTLQADRL-GIKSI--DGV-----EYLNNLTQINFSNN-QLTDIT--PL-KNLTKLVDILMNNNQIADITP----  101 (199)
T ss_dssp             HHTTCCEEECTTS-CCCCC--TTG-----GGCTTCCEEECCSS-CCCCCG--GG-TTCTTCCEEECCSSCCCCCGG----
T ss_pred             HhcCCCEEECCCC-CCCCc--ccc-----ccCCCcCcCccccc-cccCcc--cc-cCCcccccccccccccccccc----
Confidence            5688999999995 45542  111     33599999999996 676522  23 358999999999874332222    


Q ss_pred             HHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCC
Q 026356          126 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSN  205 (240)
Q Consensus       126 ~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~  205 (240)
                      ...+++|+.|+++++.......   + ..+++|+.|+++++ .++.             +.  .+.+++.++.+++.++.
T Consensus       102 l~~l~~L~~L~l~~~~~~~~~~---~-~~l~~L~~L~l~~n-~l~~-------------~~--~l~~~~~L~~L~l~~n~  161 (199)
T d2omxa2         102 LANLTNLTGLTLFNNQITDIDP---L-KNLTNLNRLELSSN-TISD-------------IS--ALSGLTSLQQLNFSSNQ  161 (199)
T ss_dssp             GTTCTTCSEEECCSSCCCCCGG---G-TTCTTCSEEECCSS-CCCC-------------CG--GGTTCTTCSEEECCSSC
T ss_pred             cccccccccccccccccccccc---c-chhhhhHHhhhhhh-hhcc-------------cc--ccccccccccccccccc
Confidence            3478999999999994443222   2 35889999999985 4432             11  24667889999998888


Q ss_pred             CCchhHHHHHHHhhcccccchhhhhhhhhhhc
Q 026356          206 GGDHLAFAYIIETNTYKHGKEKHIIETIKTGQ  237 (240)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~d  237 (240)
                      +.+...    +  .++++|++|+++++. +.|
T Consensus       162 l~~l~~----l--~~l~~L~~L~ls~N~-i~~  186 (199)
T d2omxa2         162 VTDLKP----L--ANLTTLERLDISSNK-VSD  186 (199)
T ss_dssp             CCCCGG----G--TTCTTCCEEECCSSC-CCC
T ss_pred             ccCCcc----c--cCCCCCCEEECCCCC-CCC
Confidence            877531    2  678999999999884 444

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=4.9e-08  Score=71.31  Aligned_cols=131  Identities=16%  Similarity=0.236  Sum_probs=89.0

Q ss_pred             CeEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhc
Q 026356           23 PKVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISST  102 (240)
Q Consensus        23 ~~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~  102 (240)
                      .+.|+|++|....   ++.+. ..+++|+.|++++ +.+...  ..     ...+++|+.|+++++ .++.-.- .+...
T Consensus        20 lr~L~L~~n~I~~---i~~~~-~~l~~L~~L~Ls~-N~i~~l--~~-----~~~l~~L~~L~ls~N-~i~~l~~-~~~~~   85 (162)
T d1a9na_          20 DRELDLRGYKIPV---IENLG-ATLDQFDAIDFSD-NEIRKL--DG-----FPLLRRLKTLLVNNN-RICRIGE-GLDQA   85 (162)
T ss_dssp             CEEEECTTSCCCS---CCCGG-GGTTCCSEEECCS-SCCCEE--CC-----CCCCSSCCEEECCSS-CCCEECS-CHHHH
T ss_pred             CcEEECCCCCCCc---cCccc-cccccCCEEECCC-CCCCcc--CC-----cccCcchhhhhcccc-cccCCCc-ccccc
Confidence            4669999998332   12222 4788999999999 567642  11     256799999999996 6654211 12345


Q ss_pred             CCCCCEEEecCCCCCCHH-HHHHHHHcCCcCCEEeccCCCCCCHHH--HHHHHHhCCCCcEEeccCCCCCCHHH
Q 026356          103 CPELKVFSIYWNVRVTDI-GIQHLVKNCKHIIDLNLSGCKNLLDKS--LQLIADNYQELESLNLTRYVNMILLG  173 (240)
Q Consensus       103 ~~~L~~L~l~~~~~l~~~-~~~~l~~~~~~L~~L~l~~c~~ltd~~--l~~l~~~~~~L~~L~l~~c~~it~~~  173 (240)
                      +++|++|+++++ .+++- .+..+ ..+++|++|++++| .+++..  -..+...+|+|+.||...   ++...
T Consensus        86 l~~L~~L~L~~N-~i~~~~~l~~l-~~l~~L~~L~l~~N-~i~~~~~~r~~~i~~lp~L~~LD~~~---i~~~e  153 (162)
T d1a9na_          86 LPDLTELILTNN-SLVELGDLDPL-ASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQK---VKLKE  153 (162)
T ss_dssp             CTTCCEEECCSC-CCCCGGGGGGG-GGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEE---CCHHH
T ss_pred             ccccccceeccc-ccccccccccc-ccccccchhhcCCC-ccccccchHHHHHHHCCCcCeeCCCC---CCHHH
Confidence            999999999988 56543 33333 57899999999999 565432  123445699999998554   55543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.31  E-value=3.8e-08  Score=68.62  Aligned_cols=119  Identities=20%  Similarity=0.332  Sum_probs=67.5

Q ss_pred             eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356           24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC  103 (240)
Q Consensus        24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~  103 (240)
                      |+|+++++....   +..  +..+++|++|++++ +.++.-. ..+     ..+++|+.|++++ +.+++-  ..++ .+
T Consensus         1 R~L~Ls~n~l~~---l~~--l~~l~~L~~L~ls~-N~l~~lp-~~~-----~~l~~L~~L~l~~-N~i~~l--~~~~-~l   64 (124)
T d1dcea3           1 RVLHLAHKDLTV---LCH--LEQLLLVTHLDLSH-NRLRALP-PAL-----AALRCLEVLQASD-NALENV--DGVA-NL   64 (124)
T ss_dssp             SEEECTTSCCSS---CCC--GGGGTTCCEEECCS-SCCCCCC-GGG-----GGCTTCCEEECCS-SCCCCC--GGGT-TC
T ss_pred             CEEEcCCCCCCC---Ccc--cccCCCCCEEECCC-CccCcch-hhh-----hhhhccccccccc-cccccc--Cccc-cc
Confidence            467888877432   222  34777888888887 5565421 111     2347788888887 465542  2222 47


Q ss_pred             CCCCEEEecCCCCCCHH-HHHHHHHcCCcCCEEeccCCCCCCHH--HHHHHHHhCCCCcEE
Q 026356          104 PELKVFSIYWNVRVTDI-GIQHLVKNCKHIIDLNLSGCKNLLDK--SLQLIADNYQELESL  161 (240)
Q Consensus       104 ~~L~~L~l~~~~~l~~~-~~~~l~~~~~~L~~L~l~~c~~ltd~--~l~~l~~~~~~L~~L  161 (240)
                      ++|++|+++++ .+++. .+..+ ..+++|+.|+++++ .+++.  ....+...+|+|+.|
T Consensus        65 ~~L~~L~l~~N-~i~~~~~~~~l-~~~~~L~~L~l~~N-~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          65 PRLQELLLCNN-RLQQSAAIQPL-VSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SSCCEEECCSS-CCCSSSTTGGG-GGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEE
T ss_pred             cccCeEECCCC-ccCCCCCchhh-cCCCCCCEEECCCC-cCCcCccHHHHHHHHCcCcceE
Confidence            77777777766 44432 22222 45677777777776 45431  123344456666665

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.30  E-value=1e-07  Score=73.09  Aligned_cols=162  Identities=11%  Similarity=0.138  Sum_probs=82.1

Q ss_pred             EeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCC
Q 026356           26 IDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPE  105 (240)
Q Consensus        26 L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~  105 (240)
                      |++.+|. +..  +..  +.++++|+.|+++++ .+.+..  .     ...+++++.++++++ .+++  +..++ .+++
T Consensus        46 L~l~~~~-i~~--l~~--l~~l~~L~~L~ls~n-~i~~~~--~-----l~~l~~l~~l~~~~n-~~~~--i~~l~-~l~~  108 (227)
T d1h6ua2          46 LSAFGTG-VTT--IEG--VQYLNNLIGLELKDN-QITDLA--P-----LKNLTKITELELSGN-PLKN--VSAIA-GLQS  108 (227)
T ss_dssp             EECTTSC-CCC--CTT--GGGCTTCCEEECCSS-CCCCCG--G-----GTTCCSCCEEECCSC-CCSC--CGGGT-TCTT
T ss_pred             EECCCCC-CCc--chh--HhcCCCCcEeecCCc-eeeccc--c-----ccccccccccccccc-cccc--ccccc-cccc
Confidence            7777775 222  222  347888888888884 454321  1     234577888888775 4432  22222 4677


Q ss_pred             CCEEEecCCCCCCHHHHHH------------------HHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCC
Q 026356          106 LKVFSIYWNVRVTDIGIQH------------------LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYV  167 (240)
Q Consensus       106 L~~L~l~~~~~l~~~~~~~------------------l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~  167 (240)
                      |+.++++++.......+..                  -...+++|+.|++++| .+++..  .+ .++++|+.|++++| 
T Consensus       109 L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~--~l-~~l~~L~~L~Ls~n-  183 (227)
T d1h6ua2         109 IKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNA-QVSDLT--PL-ANLSKLTTLKADDN-  183 (227)
T ss_dssp             CCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCCCG--GG-TTCTTCCEEECCSS-
T ss_pred             ccccccccccccccchhccccchhhhhchhhhhchhhhhcccccccccccccc-ccccch--hh-cccccceecccCCC-
Confidence            7777777653211111000                  0124445666666655 333211  11 23556666666654 


Q ss_pred             CCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhh
Q 026356          168 NMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHII  230 (240)
Q Consensus       168 ~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  230 (240)
                      .+++-             .  .+.+++.|+.++++.+.+.+...    +  ..+++|+.|+++
T Consensus       184 ~l~~l-------------~--~l~~l~~L~~L~Ls~N~lt~i~~----l--~~l~~L~~L~ls  225 (227)
T d1h6ua2         184 KISDI-------------S--PLASLPNLIEVHLKNNQISDVSP----L--ANTSNLFIVTLT  225 (227)
T ss_dssp             CCCCC-------------G--GGGGCTTCCEEECTTSCCCBCGG----G--TTCTTCCEEEEE
T ss_pred             ccCCC-------------h--hhcCCCCCCEEECcCCcCCCCcc----c--ccCCCCCEEEee
Confidence            44330             0  12445566666666665554411    2  455666666553

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.20  E-value=1.8e-07  Score=70.94  Aligned_cols=145  Identities=18%  Similarity=0.245  Sum_probs=101.6

Q ss_pred             cCCCCceEeccCCCCCcHH-HHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHH
Q 026356           46 RYRHVREINLEFAQDIEDR-HLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH  124 (240)
Q Consensus        46 ~~~~L~~L~l~~c~~i~~~-~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~  124 (240)
                      .+.+|++|+++++ .+.+. ++        ..+++|++|+++++ ++++  +..+ ..+++|+.|+++++ .+++-  ..
T Consensus        44 ~L~~L~~L~l~~~-~i~~l~~l--------~~l~~L~~L~L~~n-~i~~--l~~~-~~l~~L~~L~l~~n-~i~~l--~~  107 (210)
T d1h6ta2          44 ELNSIDQIIANNS-DIKSVQGI--------QYLPNVTKLFLNGN-KLTD--IKPL-ANLKNLGWLFLDEN-KVKDL--SS  107 (210)
T ss_dssp             HHHTCCEEECTTS-CCCCCTTG--------GGCTTCCEEECCSS-CCCC--CGGG-TTCTTCCEEECCSS-CCCCG--GG
T ss_pred             HhcCccEEECcCC-CCCCchhH--------hhCCCCCEEeCCCc-cccC--cccc-ccCccccccccccc-ccccc--cc
Confidence            4568999999985 45432 21        33599999999996 6665  2233 35899999999987 56642  22


Q ss_pred             HHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCC
Q 026356          125 LVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSS  204 (240)
Q Consensus       125 l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~  204 (240)
                       ...+++|+.|+++++ .+++-  ..+ .++++++.++++++ .+++..               ....++.|+.++++.+
T Consensus       108 -l~~l~~L~~L~l~~~-~~~~~--~~l-~~l~~l~~l~~~~n-~l~~~~---------------~~~~l~~L~~l~l~~n  166 (210)
T d1h6ta2         108 -LKDLKKLKSLSLEHN-GISDI--NGL-VHLPQLESLYLGNN-KITDIT---------------VLSRLTKLDTLSLEDN  166 (210)
T ss_dssp             -GTTCTTCCEEECTTS-CCCCC--GGG-GGCTTCCEEECCSS-CCCCCG---------------GGGGCTTCSEEECCSS
T ss_pred             -ccccccccccccccc-ccccc--ccc-cccccccccccccc-cccccc---------------cccccccccccccccc
Confidence             346789999999999 44431  222 35889999999885 555421               2245678899999888


Q ss_pred             CCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356          205 NGGDHLAFAYIIETNTYKHGKEKHIIETI  233 (240)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  233 (240)
                      .+.+...    +  ..+++|++|++++|.
T Consensus       167 ~l~~i~~----l--~~l~~L~~L~Ls~N~  189 (210)
T d1h6ta2         167 QISDIVP----L--AGLTKLQNLYLSKNH  189 (210)
T ss_dssp             CCCCCGG----G--TTCTTCCEEECCSSC
T ss_pred             ccccccc----c--cCCCCCCEEECCCCC
Confidence            8876521    2  578999999998873

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.20  E-value=7.9e-08  Score=72.52  Aligned_cols=105  Identities=18%  Similarity=0.280  Sum_probs=72.3

Q ss_pred             hcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHH
Q 026356           45 PRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQH  124 (240)
Q Consensus        45 ~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~  124 (240)
                      ..+++|++|++++ +.|.+.  ..+. .+    ++|+.|+++++ .+++  +..+...+++|++|+++++ .+++-  ..
T Consensus        45 ~~L~~L~~L~Ls~-n~I~~i--~~l~-~l----~~L~~L~Ls~N-~i~~--i~~~~~~~~~L~~L~l~~N-~i~~l--~~  110 (198)
T d1m9la_          45 STLKACKHLALST-NNIEKI--SSLS-GM----ENLRILSLGRN-LIKK--IENLDAVADTLEELWISYN-QIASL--SG  110 (198)
T ss_dssp             HHTTTCCEEECSE-EEESCC--CCHH-HH----TTCCEEECCEE-EECS--CSSHHHHHHHCCEEECSEE-ECCCH--HH
T ss_pred             hcccccceeECcc-cCCCCc--cccc-CC----ccccChhhccc-cccc--ccccccccccccccccccc-ccccc--cc
Confidence            4789999999998 455542  1222 23    89999999996 5553  1122233567999999987 56642  22


Q ss_pred             HHHcCCcCCEEeccCCCCCCHHH-HHHHHHhCCCCcEEeccCC
Q 026356          125 LVKNCKHIIDLNLSGCKNLLDKS-LQLIADNYQELESLNLTRY  166 (240)
Q Consensus       125 l~~~~~~L~~L~l~~c~~ltd~~-l~~l~~~~~~L~~L~l~~c  166 (240)
                       ...+++|+.|+++++ .+++-. +..+ ..+++|+.|+++++
T Consensus       111 -~~~l~~L~~L~L~~N-~i~~~~~~~~l-~~l~~L~~L~L~~N  150 (198)
T d1m9la_         111 -IEKLVNLRVLYMSNN-KITNWGEIDKL-AALDKLEDLLLAGN  150 (198)
T ss_dssp             -HHHHHHSSEEEESEE-ECCCHHHHHHH-TTTTTCSEEEECSS
T ss_pred             -ccccccccccccccc-hhccccccccc-cCCCccceeecCCC
Confidence             235678999999999 787643 3344 45899999999985

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.19  E-value=7.2e-07  Score=73.02  Aligned_cols=80  Identities=14%  Similarity=0.098  Sum_probs=57.8

Q ss_pred             HcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCC
Q 026356          127 KNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNG  206 (240)
Q Consensus       127 ~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~  206 (240)
                      ..+++++.|+++++ .+++..  .+ ..+++|++|++++| .+++             +.  .+.+++.|+.++++++.+
T Consensus       304 ~~~~~l~~L~ls~n-~l~~l~--~l-~~l~~L~~L~L~~n-~l~~-------------l~--~l~~l~~L~~L~l~~N~l  363 (384)
T d2omza2         304 SNLKNLTYLTLYFN-NISDIS--PV-SSLTKLQRLFFANN-KVSD-------------VS--SLANLTNINWLSAGHNQI  363 (384)
T ss_dssp             GGCTTCSEEECCSS-CCSCCG--GG-GGCTTCCEEECCSS-CCCC-------------CG--GGGGCTTCCEEECCSSCC
T ss_pred             chhcccCeEECCCC-CCCCCc--cc-ccCCCCCEEECCCC-CCCC-------------Ch--hHcCCCCCCEEECCCCcC
Confidence            46678888888888 676532  22 45888999999986 6654             11  235688899999998888


Q ss_pred             CchhHHHHHHHhhcccccchhhhhhh
Q 026356          207 GDHLAFAYIIETNTYKHGKEKHIIET  232 (240)
Q Consensus       207 ~~~~~~~~~~~~~~~~~L~~L~l~~c  232 (240)
                      .+...    +  .++++|++|++++.
T Consensus       364 ~~l~~----l--~~l~~L~~L~L~~N  383 (384)
T d2omza2         364 SDLTP----L--ANLTRITQLGLNDQ  383 (384)
T ss_dssp             CBCGG----G--TTCTTCSEEECCCE
T ss_pred             CCChh----h--ccCCCCCEeeCCCC
Confidence            77632    2  67889999988753

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=6.1e-08  Score=76.36  Aligned_cols=172  Identities=16%  Similarity=0.197  Sum_probs=92.9

Q ss_pred             EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCC
Q 026356           25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCP  104 (240)
Q Consensus        25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~  104 (240)
                      .|+|++|.. ..  +..-.+..+++|++|++++ +.++...  .     ...+++|+.|+++++ .++..  ......++
T Consensus        35 ~L~Ls~N~i-~~--l~~~~f~~l~~L~~L~L~~-N~l~~l~--~-----~~~l~~L~~L~Ls~N-~l~~~--~~~~~~l~  100 (266)
T d1p9ag_          35 ILHLSENLL-YT--FSLATLMPYTRLTQLNLDR-AELTKLQ--V-----DGTLPVLGTLDLSHN-QLQSL--PLLGQTLP  100 (266)
T ss_dssp             EEECTTSCC-SE--EEGGGGTTCTTCCEEECTT-SCCCEEE--C-----CSCCTTCCEEECCSS-CCSSC--CCCTTTCT
T ss_pred             EEECcCCcC-CC--cCHHHhhcccccccccccc-ccccccc--c-----ccccccccccccccc-ccccc--cccccccc
Confidence            488888863 22  1111234788899999988 4565321  1     245688999999885 55431  11233577


Q ss_pred             CCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhh
Q 026356          105 ELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILL  184 (240)
Q Consensus       105 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~  184 (240)
                      +|+.|+++++. +..... .....+++++.|+++++ .++.... .....+++|+.++++++ +++...           
T Consensus       101 ~L~~L~l~~~~-~~~~~~-~~~~~l~~l~~L~l~~n-~l~~l~~-~~~~~l~~l~~l~l~~N-~l~~~~-----------  164 (266)
T d1p9ag_         101 ALTVLDVSFNR-LTSLPL-GALRGLGELQELYLKGN-ELKTLPP-GLLTPTPKLEKLSLANN-NLTELP-----------  164 (266)
T ss_dssp             TCCEEECCSSC-CCCCCS-STTTTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECTTS-CCSCCC-----------
T ss_pred             ccccccccccc-cceeec-ccccccccccccccccc-ccceecc-ccccccccchhcccccc-cccccC-----------
Confidence            88888888763 221110 11134557777777776 4442111 11123567777777774 443210           


Q ss_pred             hhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356          185 MSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  233 (240)
Q Consensus       185 l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  233 (240)
                        .-.+.+++.|+.++++.+.+...-.  .+   ...++|+.|++.+.|
T Consensus       165 --~~~~~~l~~L~~L~Ls~N~L~~lp~--~~---~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         165 --AGLLNGLENLDTLLLQENSLYTIPK--GF---FGSHLLPFAFLHGNP  206 (266)
T ss_dssp             --TTTTTTCTTCCEEECCSSCCCCCCT--TT---TTTCCCSEEECCSCC
T ss_pred             --ccccccccccceeecccCCCcccCh--hH---CCCCCCCEEEecCCC
Confidence              0023456667777776666553210  01   235666666666443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=9e-08  Score=75.97  Aligned_cols=185  Identities=12%  Similarity=0.104  Sum_probs=91.2

Q ss_pred             eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHH--------------------HccCCCCCccEE
Q 026356           24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKT--------------------KCLGSLQDLESL   83 (240)
Q Consensus        24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~--------------------~~~~~~~~L~~L   83 (240)
                      +.|+|++|.. +.  +..-.+..+++|++|++++ +.+..........                    .....+++|+.|
T Consensus        35 ~~L~Ls~N~i-~~--i~~~~f~~l~~L~~L~ls~-n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L  110 (284)
T d1ozna_          35 QRIFLHGNRI-SH--VPAASFRACRNLTILWLHS-NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (284)
T ss_dssp             SEEECTTSCC-CE--ECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CEEECcCCcC-CC--CCHHHhhcccccccccccc-ccccccccccccccccccccccccccccccccchhhcccccCCEE
Confidence            4589998873 22  2222234778899999887 4443322111100                    001223455555


Q ss_pred             ecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEec
Q 026356           84 NLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNL  163 (240)
Q Consensus        84 ~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l  163 (240)
                      +++++ .+..... ......++|+.++++++ .++...-. ....+++|++|+++++ .++...... ..++++|+.+++
T Consensus       111 ~l~~n-~~~~~~~-~~~~~~~~L~~l~l~~N-~l~~i~~~-~f~~~~~L~~L~l~~N-~l~~l~~~~-f~~l~~L~~l~l  184 (284)
T d1ozna_         111 HLDRC-GLQELGP-GLFRGLAALQYLYLQDN-ALQALPDD-TFRDLGNLTHLFLHGN-RISSVPERA-FRGLHSLDRLLL  184 (284)
T ss_dssp             ECTTS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEEC
T ss_pred             ecCCc-ccccccc-cccchhcccchhhhccc-cccccChh-HhccccchhhcccccC-cccccchhh-hccccccchhhh
Confidence            55553 2211110 01112445555555544 23221111 1124455666666666 444211111 123556666666


Q ss_pred             cCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhhhh
Q 026356          164 TRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTG  236 (240)
Q Consensus       164 ~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~  236 (240)
                      +++ .++.             +..-.+.+++.++.++++.+.+....  ...+  ..+++|+.|++.+.|-..
T Consensus       185 ~~N-~l~~-------------i~~~~f~~l~~L~~L~l~~N~i~~~~--~~~~--~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         185 HQN-RVAH-------------VHPHAFRDLGRLMTLYLFANNLSALP--TEAL--APLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             CSS-CCCE-------------ECTTTTTTCTTCCEEECCSSCCSCCC--HHHH--TTCTTCCEEECCSSCEEC
T ss_pred             hhc-cccc-------------cChhHhhhhhhccccccccccccccc--cccc--ccccccCEEEecCCCCCC
Confidence            653 3332             11113466778888888888777652  2334  578889998888755443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.95  E-value=1.5e-06  Score=66.44  Aligned_cols=194  Identities=11%  Similarity=0.078  Sum_probs=109.6

Q ss_pred             hhccccccCCcCeE--EeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCC
Q 026356           12 EEEETWSKETVPKV--IDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQ   89 (240)
Q Consensus        12 ~~~~~w~~~~~~~~--L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~   89 (240)
                      +..++|.++.+.++  +++......+..     ....+.+|+.|++.+| ++++-  ..+     ..+++|+.|+++++ 
T Consensus         8 ~~~~~~pd~~l~~~~~~~l~~~~~~d~~-----~~~~l~~L~~L~l~~~-~i~~l--~~l-----~~l~~L~~L~ls~n-   73 (227)
T d1h6ua2           8 AINVIFPDPALANAIKIAAGKSNVTDTV-----TQADLDGITTLSAFGT-GVTTI--EGV-----QYLNNLIGLELKDN-   73 (227)
T ss_dssp             EHHHHCCSHHHHHHHHHHTTCSSTTSEE-----CHHHHHTCCEEECTTS-CCCCC--TTG-----GGCTTCCEEECCSS-
T ss_pred             CccccCCCHHHHHHHHHHhCCCCcCCcC-----CHHHcCCcCEEECCCC-CCCcc--hhH-----hcCCCCcEeecCCc-
Confidence            34456666555443  455544422221     1235678999999995 46542  222     34599999999996 


Q ss_pred             CCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCC
Q 026356           90 KISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNM  169 (240)
Q Consensus        90 ~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~i  169 (240)
                      .+++.  .. ...+++|+.++++++ .+++  +..+ ..+++|+.++++++.......+    ...+.++.+.++.+...
T Consensus        74 ~i~~~--~~-l~~l~~l~~l~~~~n-~~~~--i~~l-~~l~~L~~l~l~~~~~~~~~~~----~~~~~~~~l~~~~~~~~  142 (227)
T d1h6ua2          74 QITDL--AP-LKNLTKITELELSGN-PLKN--VSAI-AGLQSIKTLDLTSTQITDVTPL----AGLSNLQVLYLDLNQIT  142 (227)
T ss_dssp             CCCCC--GG-GTTCCSCCEEECCSC-CCSC--CGGG-TTCTTCCEEECTTSCCCCCGGG----TTCTTCCEEECCSSCCC
T ss_pred             eeecc--cc-ccccccccccccccc-cccc--cccc-cccccccccccccccccccchh----ccccchhhhhchhhhhc
Confidence            56542  12 245899999999987 3432  1223 3678999999998843221111    12334444444443111


Q ss_pred             CHHHHHHHH------HhChhhhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhhhhhc
Q 026356          170 ILLGLFYIW------SNNILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETIKTGQ  237 (240)
Q Consensus       170 t~~~~~~l~------~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~d  237 (240)
                      ....+....      -.+........+.+++.|+.++++.+.+.+...    +  ..+++|++|++++|. +.+
T Consensus       143 ~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~----l--~~l~~L~~L~Ls~N~-lt~  209 (227)
T d1h6ua2         143 NISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP----L--ASLPNLIEVHLKNNQ-ISD  209 (227)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG----G--GGCTTCCEEECTTSC-CCB
T ss_pred             hhhhhccccccccccccccccccchhhcccccceecccCCCccCCChh----h--cCCCCCCEEECcCCc-CCC
Confidence            111100000      000000000134678889999999888776521    3  678999999999984 443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=1.1e-07  Score=74.89  Aligned_cols=153  Identities=16%  Similarity=0.162  Sum_probs=101.1

Q ss_pred             CCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHH
Q 026356           48 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK  127 (240)
Q Consensus        48 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~  127 (240)
                      +++++|+|++ +.++......     ...+++|+.|+++++ .++.  +... ..+++|++|+++++ .++..  .....
T Consensus        31 ~~l~~L~Ls~-N~i~~l~~~~-----f~~l~~L~~L~L~~N-~l~~--l~~~-~~l~~L~~L~Ls~N-~l~~~--~~~~~   97 (266)
T d1p9ag_          31 KDTTILHLSE-NLLYTFSLAT-----LMPYTRLTQLNLDRA-ELTK--LQVD-GTLPVLGTLDLSHN-QLQSL--PLLGQ   97 (266)
T ss_dssp             TTCCEEECTT-SCCSEEEGGG-----GTTCTTCCEEECTTS-CCCE--EECC-SCCTTCCEEECCSS-CCSSC--CCCTT
T ss_pred             cCCCEEECcC-CcCCCcCHHH-----hhccccccccccccc-cccc--cccc-cccccccccccccc-ccccc--ccccc
Confidence            4799999999 6676433222     245689999999995 6663  2222 25889999999987 44321  22345


Q ss_pred             cCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCC
Q 026356          128 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGG  207 (240)
Q Consensus       128 ~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~  207 (240)
                      .+++|+.|+++++ .+...... .....++++.|+++++ .++..             ..-...+++.++.++++.+.+.
T Consensus        98 ~l~~L~~L~l~~~-~~~~~~~~-~~~~l~~l~~L~l~~n-~l~~l-------------~~~~~~~l~~l~~l~l~~N~l~  161 (266)
T d1p9ag_          98 TLPALTVLDVSFN-RLTSLPLG-ALRGLGELQELYLKGN-ELKTL-------------PPGLLTPTPKLEKLSLANNNLT  161 (266)
T ss_dssp             TCTTCCEEECCSS-CCCCCCSS-TTTTCTTCCEEECTTS-CCCCC-------------CTTTTTTCTTCCEEECTTSCCS
T ss_pred             ccccccccccccc-ccceeecc-cccccccccccccccc-cccee-------------ccccccccccchhccccccccc
Confidence            7789999999988 44331111 1134778999999985 44331             1113456778899999888876


Q ss_pred             chhHHHHHHHhhcccccchhhhhhhh
Q 026356          208 DHLAFAYIIETNTYKHGKEKHIIETI  233 (240)
Q Consensus       208 ~~~~~~~~~~~~~~~~L~~L~l~~c~  233 (240)
                      ...  ...+  ..+++|++|+++++.
T Consensus       162 ~~~--~~~~--~~l~~L~~L~Ls~N~  183 (266)
T d1p9ag_         162 ELP--AGLL--NGLENLDTLLLQENS  183 (266)
T ss_dssp             CCC--TTTT--TTCTTCCEEECCSSC
T ss_pred             ccC--cccc--ccccccceeecccCC
Confidence            542  1123  568899999998764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=9.6e-08  Score=75.80  Aligned_cols=157  Identities=11%  Similarity=0.059  Sum_probs=83.4

Q ss_pred             CCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHH------------------------HhcC
Q 026356           48 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEII------------------------SSTC  103 (240)
Q Consensus        48 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l------------------------~~~~  103 (240)
                      +++++|+|++ ++++......     ...+++|++|++++. .++.......                        ...+
T Consensus        32 ~~~~~L~Ls~-N~i~~i~~~~-----f~~l~~L~~L~ls~n-~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l  104 (284)
T d1ozna_          32 AASQRIFLHG-NRISHVPAAS-----FRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL  104 (284)
T ss_dssp             TTCSEEECTT-SCCCEECTTT-----TTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTC
T ss_pred             CCCCEEECcC-CcCCCCCHHH-----hhccccccccccccc-cccccccccccccccccccccccccccccccchhhccc
Confidence            4689999999 5675533222     245689999999884 4432111000                        0124


Q ss_pred             CCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChh
Q 026356          104 PELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNIL  183 (240)
Q Consensus       104 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~  183 (240)
                      ++|++|+++++. +.... ......+++|+.++++++ .++...... ...+++|+.|+++++ +++.            
T Consensus       105 ~~L~~L~l~~n~-~~~~~-~~~~~~~~~L~~l~l~~N-~l~~i~~~~-f~~~~~L~~L~l~~N-~l~~------------  167 (284)
T d1ozna_         105 GRLHTLHLDRCG-LQELG-PGLFRGLAALQYLYLQDN-ALQALPDDT-FRDLGNLTHLFLHGN-RISS------------  167 (284)
T ss_dssp             TTCCEEECTTSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCE------------
T ss_pred             ccCCEEecCCcc-ccccc-ccccchhcccchhhhccc-cccccChhH-hccccchhhcccccC-cccc------------
Confidence            455555555442 21110 011123345566666555 444211111 123556666666664 3332            


Q ss_pred             hhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhhh
Q 026356          184 LMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIETI  233 (240)
Q Consensus       184 ~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  233 (240)
                       +..-.+.+++.|+.+++..+.+....  ...+  ..+++|++|+++++.
T Consensus       168 -l~~~~f~~l~~L~~l~l~~N~l~~i~--~~~f--~~l~~L~~L~l~~N~  212 (284)
T d1ozna_         168 -VPERAFRGLHSLDRLLLHQNRVAHVH--PHAF--RDLGRLMTLYLFANN  212 (284)
T ss_dssp             -ECTTTTTTCTTCCEEECCSSCCCEEC--TTTT--TTCTTCCEEECCSSC
T ss_pred             -cchhhhccccccchhhhhhccccccC--hhHh--hhhhhcccccccccc
Confidence             11114467788888888887776542  1223  567888888887654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.78  E-value=2.5e-06  Score=63.97  Aligned_cols=122  Identities=20%  Similarity=0.229  Sum_probs=79.6

Q ss_pred             EeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCC
Q 026356           26 IDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPE  105 (240)
Q Consensus        26 L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~  105 (240)
                      |+|++|.. .+  +..  +..+++|+.|+++++ .+++.  ..+....    ++|+.|+++++ .+++  +..+. .+++
T Consensus        53 L~Ls~n~I-~~--i~~--l~~l~~L~~L~Ls~N-~i~~i--~~~~~~~----~~L~~L~l~~N-~i~~--l~~~~-~l~~  116 (198)
T d1m9la_          53 LALSTNNI-EK--ISS--LSGMENLRILSLGRN-LIKKI--ENLDAVA----DTLEELWISYN-QIAS--LSGIE-KLVN  116 (198)
T ss_dssp             EECSEEEE-SC--CCC--HHHHTTCCEEECCEE-EECSC--SSHHHHH----HHCCEEECSEE-ECCC--HHHHH-HHHH
T ss_pred             eECcccCC-CC--ccc--ccCCccccChhhccc-ccccc--ccccccc----ccccccccccc-cccc--ccccc-cccc
Confidence            78877763 22  222  347899999999985 45432  1122222    67999999995 7765  23333 3788


Q ss_pred             CCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHH---------HHHHHHhCCCCcEEeccC
Q 026356          106 LKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKS---------LQLIADNYQELESLNLTR  165 (240)
Q Consensus       106 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~---------l~~l~~~~~~L~~L~l~~  165 (240)
                      |+.|+++++ .+++..-......+++|+.|+++++ .++...         -..+...+|+|+.||-..
T Consensus       117 L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~~~  183 (198)
T d1m9la_         117 LRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKLDGMP  183 (198)
T ss_dssp             SSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSS-HHHHHHCTTTTHHHHHHHHHHHCSSCCEESSGG
T ss_pred             ccccccccc-hhccccccccccCCCccceeecCCC-ccccCcccccchhhHHHHHHHHCCCcCEeCCcc
Confidence            999999987 6765433233457999999999998 344321         122345689999998543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.70  E-value=2.8e-06  Score=58.76  Aligned_cols=79  Identities=19%  Similarity=0.212  Sum_probs=43.4

Q ss_pred             CCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHH-HHHHHHhCC
Q 026356           78 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKS-LQLIADNYQ  156 (240)
Q Consensus        78 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~-l~~l~~~~~  156 (240)
                      ++|++|++++ +.++.-. ..++ .+++|+.|+++++ .+++-  .. ...+++|++|+++++ .+++.. +..+ ..++
T Consensus        20 ~~L~~L~ls~-N~l~~lp-~~~~-~l~~L~~L~l~~N-~i~~l--~~-~~~l~~L~~L~l~~N-~i~~~~~~~~l-~~~~   90 (124)
T d1dcea3          20 LLVTHLDLSH-NRLRALP-PALA-ALRCLEVLQASDN-ALENV--DG-VANLPRLQELLLCNN-RLQQSAAIQPL-VSCP   90 (124)
T ss_dssp             TTCCEEECCS-SCCCCCC-GGGG-GCTTCCEEECCSS-CCCCC--GG-GTTCSSCCEEECCSS-CCCSSSTTGGG-GGCT
T ss_pred             CCCCEEECCC-CccCcch-hhhh-hhhcccccccccc-ccccc--Cc-cccccccCeEECCCC-ccCCCCCchhh-cCCC
Confidence            6777777777 3554311 1222 4677777777765 34321  11 235667777777776 555321 2222 3466


Q ss_pred             CCcEEeccC
Q 026356          157 ELESLNLTR  165 (240)
Q Consensus       157 ~L~~L~l~~  165 (240)
                      +|+.|++++
T Consensus        91 ~L~~L~l~~   99 (124)
T d1dcea3          91 RLVLLNLQG   99 (124)
T ss_dssp             TCCEEECTT
T ss_pred             CCCEEECCC
Confidence            777777766

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=6.7e-05  Score=53.98  Aligned_cols=90  Identities=14%  Similarity=0.108  Sum_probs=51.4

Q ss_pred             HHHHHHcCCcCCEEeccCCCCCCHH-HHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeec
Q 026356          122 IQHLVKNCKHIIDLNLSGCKNLLDK-SLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQ  200 (240)
Q Consensus       122 ~~~l~~~~~~L~~L~l~~c~~ltd~-~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~  200 (240)
                      +..+.+.+++|+.|+++++ .|++- ++......+++|+.|++++ +.+++-.-             +..-+...|+.++
T Consensus        57 l~~~~~~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~-N~i~~l~~-------------l~~l~~~~L~~L~  121 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG-NELKSERE-------------LDKIKGLKLEELW  121 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTT-SCCCCGGG-------------HHHHTTCCCSSCC
T ss_pred             hHHHHHhCCCCCEeeCCCc-cccCCchhHHHHhhCCccccccccc-Cccccchh-------------hhhhhccccceee
Confidence            3445567788888888888 66652 2333334578888888887 46655211             1111223466677


Q ss_pred             ccCCCCCch-----hHHHHHHHhhcccccchhh
Q 026356          201 INSSNGGDH-----LAFAYIIETNTYKHGKEKH  228 (240)
Q Consensus       201 l~~~~~~~~-----~~~~~~~~~~~~~~L~~L~  228 (240)
                      ++.+.+...     .....+.  ..+|+|+.|+
T Consensus       122 L~~Npl~~~~~~~~~y~~~i~--~~~P~L~~LD  152 (162)
T d1koha1         122 LDGNSLSDTFRDQSTYISAIR--ERFPKLLRLD  152 (162)
T ss_dssp             CTTSTTSSSSSSHHHHHHHHH--TTSTTCCEET
T ss_pred             cCCCCcCcCcccchhHHHHHH--HHCCCCCEEC
Confidence            766666532     1223334  6678887775

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.53  E-value=2.4e-05  Score=63.59  Aligned_cols=146  Identities=18%  Similarity=0.176  Sum_probs=88.6

Q ss_pred             cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHH
Q 026356           46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL  125 (240)
Q Consensus        46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l  125 (240)
                      .+++|+.|+++++ .+.+..  .     ...+++|+.|+++++ .+++..  .+ ..+++|++|+++++ .++..  .. 
T Consensus       217 ~~~~L~~L~l~~n-~l~~~~--~-----l~~l~~L~~L~l~~n-~l~~~~--~~-~~~~~L~~L~l~~~-~l~~~--~~-  280 (384)
T d2omza2         217 ILTNLDELSLNGN-QLKDIG--T-----LASLTNLTDLDLANN-QISNLA--PL-SGLTKLTELKLGAN-QISNI--SP-  280 (384)
T ss_dssp             GCTTCCEEECCSS-CCCCCG--G-----GGGCTTCSEEECCSS-CCCCCG--GG-TTCTTCSEEECCSS-CCCCC--GG-
T ss_pred             ccCCCCEEECCCC-CCCCcc--h-----hhcccccchhccccC-ccCCCC--cc-cccccCCEeeccCc-ccCCC--Cc-
Confidence            5566777777763 344321  1     123467777777775 444311  12 24677777777655 33311  11 


Q ss_pred             HHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCC
Q 026356          126 VKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSN  205 (240)
Q Consensus       126 ~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~  205 (240)
                      ...++.++.+.++.+ .+++.  .. ...+++++.|+++++ ++++.             .  .+..++.|+.++++.+.
T Consensus       281 ~~~~~~l~~l~~~~n-~l~~~--~~-~~~~~~l~~L~ls~n-~l~~l-------------~--~l~~l~~L~~L~L~~n~  340 (384)
T d2omza2         281 LAGLTALTNLELNEN-QLEDI--SP-ISNLKNLTYLTLYFN-NISDI-------------S--PVSSLTKLQRLFFANNK  340 (384)
T ss_dssp             GTTCTTCSEEECCSS-CCSCC--GG-GGGCTTCSEEECCSS-CCSCC-------------G--GGGGCTTCCEEECCSSC
T ss_pred             ccccccccccccccc-ccccc--cc-cchhcccCeEECCCC-CCCCC-------------c--ccccCCCCCEEECCCCC
Confidence            235567777777777 45432  11 234778888888875 55541             1  13567889999999988


Q ss_pred             CCchhHHHHHHHhhcccccchhhhhhhh
Q 026356          206 GGDHLAFAYIIETNTYKHGKEKHIIETI  233 (240)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~  233 (240)
                      +.+..    .+  ..+++|++|+++++.
T Consensus       341 l~~l~----~l--~~l~~L~~L~l~~N~  362 (384)
T d2omza2         341 VSDVS----SL--ANLTNINWLSAGHNQ  362 (384)
T ss_dssp             CCCCG----GG--GGCTTCCEEECCSSC
T ss_pred             CCCCh----hH--cCCCCCCEEECCCCc
Confidence            87652    13  578999999998874

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.42  E-value=9.8e-07  Score=65.78  Aligned_cols=116  Identities=17%  Similarity=0.158  Sum_probs=68.9

Q ss_pred             CCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHH
Q 026356           48 RHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVK  127 (240)
Q Consensus        48 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~  127 (240)
                      +++++|++++ +.|+.......    ...+++|+.|++++. .+....... ....++|++|+++++ +++.-.-. ...
T Consensus        29 ~~l~~L~Ls~-N~i~~~~~~~~----f~~l~~L~~L~L~~N-~i~~~~~~~-~~~~~~L~~L~Ls~N-~l~~l~~~-~F~   99 (192)
T d1w8aa_          29 LHTTELLLND-NELGRISSDGL----FGRLPHLVKLELKRN-QLTGIEPNA-FEGASHIQELQLGEN-KIKEISNK-MFL   99 (192)
T ss_dssp             TTCSEEECCS-CCCCSBCCSCS----GGGCTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSC-CCCEECSS-SST
T ss_pred             CCCCEEEeCC-CCCcccccccc----cCCCceEeeeecccc-ccccccccc-cccccccceeeeccc-cccccCHH-HHh
Confidence            4788899888 55643111111    123488999999884 544322111 224778899999887 45432111 224


Q ss_pred             cCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHH
Q 026356          128 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGL  174 (240)
Q Consensus       128 ~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~  174 (240)
                      ++++|++|+++++ .|+.-.-. ....+++|++|++++..-..+..+
T Consensus       100 ~l~~L~~L~L~~N-~l~~i~~~-~f~~l~~L~~l~L~~N~~~~~~~~  144 (192)
T d1w8aa_         100 GLHQLKTLNLYDN-QISCVMPG-SFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             TCTTCCEEECCSS-CCCEECTT-SSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             CCCcccccccCCc-cccccCHH-HhcCCcccccccccccccccccch
Confidence            6789999999998 67642211 123578899999988533333333

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.35  E-value=1.9e-06  Score=64.19  Aligned_cols=112  Identities=16%  Similarity=0.191  Sum_probs=73.5

Q ss_pred             CCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCC
Q 026356           78 QDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQE  157 (240)
Q Consensus        78 ~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~  157 (240)
                      +++++|++++ +.++...-......+++|++|+++++ .+.... ......+++|++|+++++ .++.-... ...++++
T Consensus        29 ~~l~~L~Ls~-N~i~~~~~~~~f~~l~~L~~L~L~~N-~i~~~~-~~~~~~~~~L~~L~Ls~N-~l~~l~~~-~F~~l~~  103 (192)
T d1w8aa_          29 LHTTELLLND-NELGRISSDGLFGRLPHLVKLELKRN-QLTGIE-PNAFEGASHIQELQLGEN-KIKEISNK-MFLGLHQ  103 (192)
T ss_dssp             TTCSEEECCS-CCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBC-TTTTTTCTTCCEEECCSC-CCCEECSS-SSTTCTT
T ss_pred             CCCCEEEeCC-CCCcccccccccCCCceEeeeecccc-cccccc-ccccccccccceeeeccc-cccccCHH-HHhCCCc
Confidence            6899999999 56653221122235889999999987 343221 122346789999999999 67642221 2246889


Q ss_pred             CcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCCc
Q 026356          158 LESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGGD  208 (240)
Q Consensus       158 L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~~  208 (240)
                      |+.|+|+++ .++.             +..-.+.+++.|+.++++.+.+.-
T Consensus       104 L~~L~L~~N-~l~~-------------i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_         104 LKTLNLYDN-QISC-------------VMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCEEECCSS-CCCE-------------ECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             ccccccCCc-cccc-------------cCHHHhcCCccccccccccccccc
Confidence            999999994 6653             111134667889999997776653

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.00012  Score=52.49  Aligned_cols=63  Identities=30%  Similarity=0.358  Sum_probs=31.4

Q ss_pred             HHhcCCCCCEEEecCCCCCCH-HHHHHHHHcCCcCCEEeccCCCCCCHH-HHHHHHHhCCCCcEEeccC
Q 026356           99 ISSTCPELKVFSIYWNVRVTD-IGIQHLVKNCKHIIDLNLSGCKNLLDK-SLQLIADNYQELESLNLTR  165 (240)
Q Consensus        99 l~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~L~~L~l~~c~~ltd~-~l~~l~~~~~~L~~L~l~~  165 (240)
                      +...+++|++|+++++ ++++ .++....+.+++|+.|+++++ .|++- .+..+  ...+|+.|++++
T Consensus        60 ~~~~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l--~~~~L~~L~L~~  124 (162)
T d1koha1          60 IEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKI--KGLKLEELWLDG  124 (162)
T ss_dssp             HHHHCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHH--TTCCCSSCCCTT
T ss_pred             HHHhCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccC-ccccchhhhhh--hccccceeecCC
Confidence            3345666666666655 3433 223333445666666666666 45431 12222  133466666665

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.76  E-value=9.3e-05  Score=58.41  Aligned_cols=31  Identities=6%  Similarity=0.025  Sum_probs=17.6

Q ss_pred             EEeccCCCCCChHHHHHhhhhcCCCCceEeccCC
Q 026356           25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFA   58 (240)
Q Consensus        25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c   58 (240)
                      .|+++++....   +....+..+++|+.|+++++
T Consensus        59 ~L~l~~n~~~~---i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          59 TLILINNKISK---ISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             EEECCSSCCCC---BCTTTTTTCTTCCEEECCSS
T ss_pred             ccccccccccc---cchhhhhCCCccCEecccCC
Confidence            37777776432   11112346677777777763

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.73  E-value=6.2e-05  Score=59.48  Aligned_cols=140  Identities=15%  Similarity=0.179  Sum_probs=86.6

Q ss_pred             hhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHH
Q 026356           44 IPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQ  123 (240)
Q Consensus        44 ~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~  123 (240)
                      ...+++|+.++++.+ .+....        ....++|++|+++++ ..+......+ ..++.++.|+++++ .++.....
T Consensus       146 ~~~l~~L~~l~l~~n-~l~~l~--------~~~~~~L~~L~l~~n-~~~~~~~~~~-~~~~~l~~L~~s~n-~l~~~~~~  213 (305)
T d1xkua_         146 FQGMKKLSYIRIADT-NITTIP--------QGLPPSLTELHLDGN-KITKVDAASL-KGLNNLAKLGLSFN-SISAVDNG  213 (305)
T ss_dssp             GGGCTTCCEEECCSS-CCCSCC--------SSCCTTCSEEECTTS-CCCEECTGGG-TTCTTCCEEECCSS-CCCEECTT
T ss_pred             cccccccCccccccC-CccccC--------cccCCccCEEECCCC-cCCCCChhHh-hccccccccccccc-cccccccc
Confidence            347788999999985 343211        123488999999985 4433222222 35788999999987 55443222


Q ss_pred             HHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccC
Q 026356          124 HLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINS  203 (240)
Q Consensus       124 ~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~  203 (240)
                       ....+++|++|++++| .++.-. ..+ ..+++|+.|+++++ .++.-+-..+..  ..     .......|+.++++.
T Consensus       214 -~~~~l~~L~~L~L~~N-~L~~lp-~~l-~~l~~L~~L~Ls~N-~i~~i~~~~f~~--~~-----~~~~~~~L~~L~L~~  281 (305)
T d1xkua_         214 -SLANTPHLRELHLNNN-KLVKVP-GGL-ADHKYIQVVYLHNN-NISAIGSNDFCP--PG-----YNTKKASYSGVSLFS  281 (305)
T ss_dssp             -TGGGSTTCCEEECCSS-CCSSCC-TTT-TTCSSCCEEECCSS-CCCCCCTTSSSC--SS-----CCTTSCCCSEEECCS
T ss_pred             -cccccccceeeecccc-cccccc-ccc-ccccCCCEEECCCC-ccCccChhhccC--cc-----hhcccCCCCEEECCC
Confidence             2247889999999999 676321 122 34889999999995 676522111110  00     123456788888877


Q ss_pred             CCCC
Q 026356          204 SNGG  207 (240)
Q Consensus       204 ~~~~  207 (240)
                      +.+.
T Consensus       282 N~~~  285 (305)
T d1xkua_         282 NPVQ  285 (305)
T ss_dssp             SSSC
T ss_pred             CcCc
Confidence            7664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=4e-06  Score=64.35  Aligned_cols=81  Identities=10%  Similarity=0.125  Sum_probs=42.3

Q ss_pred             EEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCC
Q 026356           25 VIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCP  104 (240)
Q Consensus        25 ~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~  104 (240)
                      .|+++++.. ..  +..-.+..+++|++|+++++.........     ....+++++++.+..+..++...... ...++
T Consensus        33 ~L~Ls~n~i-~~--l~~~~f~~l~~L~~L~ls~n~~~~~i~~~-----~f~~l~~l~~l~~~~~n~l~~~~~~~-~~~l~  103 (242)
T d1xwdc1          33 ELRFVLTKL-RV--IQKGAFSGFGDLEKIEISQNDVLEVIEAD-----VFSNLPKLHEIRIEKANNLLYINPEA-FQNLP  103 (242)
T ss_dssp             EEEEESCCC-CE--ECTTTTTTCTTCCEEEEESCTTCCEECSS-----SEESCTTCCEEEEECCTTCCEECTTS-EECCT
T ss_pred             EEECcCCcC-Cc--cChhHhhccchhhhhhhccccccceeecc-----cccccccccccccccccccccccccc-ccccc
Confidence            378877763 21  11112346778888888874322111100     01234677777776654443322211 13477


Q ss_pred             CCCEEEecCC
Q 026356          105 ELKVFSIYWN  114 (240)
Q Consensus       105 ~L~~L~l~~~  114 (240)
                      +|++|+++++
T Consensus       104 ~L~~l~l~~~  113 (242)
T d1xwdc1         104 NLQYLLISNT  113 (242)
T ss_dssp             TCCEEEEESC
T ss_pred             cccccccchh
Confidence            7888888765

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=1.2e-05  Score=61.59  Aligned_cols=177  Identities=16%  Similarity=0.120  Sum_probs=96.8

Q ss_pred             eEEeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcC
Q 026356           24 KVIDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTC  103 (240)
Q Consensus        24 ~~L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~  103 (240)
                      +.|++++|.....  +....+..+++++++.+..++++.......     ...+++|++++++++ .+++....   ..+
T Consensus        56 ~~L~ls~n~~~~~--i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~-----~~~l~~L~~l~l~~~-~l~~~~~~---~~~  124 (242)
T d1xwdc1          56 EKIEISQNDVLEV--IEADVFSNLPKLHEIRIEKANNLLYINPEA-----FQNLPNLQYLLISNT-GIKHLPDV---HKI  124 (242)
T ss_dssp             CEEEEESCTTCCE--ECSSSEESCTTCCEEEEECCTTCCEECTTS-----EECCTTCCEEEEESC-CCCSCCCC---TTT
T ss_pred             hhhhhccccccce--eecccccccccccccccccccccccccccc-----ccccccccccccchh-hhcccccc---ccc
Confidence            4499998874332  112223467889999988766654433221     245689999999995 55432111   123


Q ss_pred             CCCCEE---EecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHh
Q 026356          104 PELKVF---SIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSN  180 (240)
Q Consensus       104 ~~L~~L---~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~  180 (240)
                      ++++.+   ..++ ..++.-....+......++.|+++++ .++.....  +.+.+++.++....++++++-        
T Consensus       125 ~~l~~l~~~~~~n-~~l~~i~~~~~~~~~~~l~~L~l~~n-~l~~i~~~--~~~~~~l~~~~~l~~n~l~~l--------  192 (242)
T d1xwdc1         125 HSLQKVLLDIQDN-INIHTIERNSFVGLSFESVILWLNKN-GIQEIHNC--AFNGTQLDELNLSDNNNLEEL--------  192 (242)
T ss_dssp             CBSSCEEEEEESC-TTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTT--TTTTCCEEEEECTTCTTCCCC--------
T ss_pred             ccccccccccccc-cccccccccccccccccceeeecccc-cccccccc--cccchhhhccccccccccccc--------
Confidence            334433   3332 23322211112212247888888877 56532111  123556666655444555431        


Q ss_pred             ChhhhhHHHhcCCccceeecccCCCCCchhHHHHHHHhhcccccchhhhhhh
Q 026356          181 NILLMSEFIYHGIRFFQAVQINSSNGGDHLAFAYIIETNTYKHGKEKHIIET  232 (240)
Q Consensus       181 ~~~~l~~l~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  232 (240)
                           ..-.+.+++.|+.++++.+.+.....  ..+  ..++.|+.+++...
T Consensus       193 -----~~~~f~~l~~L~~L~Ls~N~l~~l~~--~~~--~~l~~L~~l~~~~l  235 (242)
T d1xwdc1         193 -----PNDVFHGASGPVILDISRTRIHSLPS--YGL--ENLKKLRARSTYNL  235 (242)
T ss_dssp             -----CTTTTTTSCCCSEEECTTSCCCCCCS--SSC--TTCCEEESSSEESS
T ss_pred             -----cHHHhcCCCCCCEEECCCCcCCccCH--HHH--cCCcccccCcCCCC
Confidence                 11135778899999998887764411  123  56677777766543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.00096  Score=47.32  Aligned_cols=59  Identities=20%  Similarity=0.107  Sum_probs=28.2

Q ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCC
Q 026356          103 CPELKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY  166 (240)
Q Consensus       103 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c  166 (240)
                      +++|+.|+++++ +++.-.-. ....+++|+.|+++++ .++.-... +.. ..+|+.|++++.
T Consensus        55 l~~L~~L~Ls~N-~l~~i~~~-~f~~l~~L~~L~Ls~N-~l~~l~~~-~~~-~~~l~~L~L~~N  113 (156)
T d2ifga3          55 LGELRNLTIVKS-GLRFVAPD-AFHFTPRLSRLNLSFN-ALESLSWK-TVQ-GLSLQELVLSGN  113 (156)
T ss_dssp             CCCCSEEECCSS-CCCEECTT-GGGSCSCCCEEECCSS-CCSCCCST-TTC-SCCCCEEECCSS
T ss_pred             ccccCcceeecc-ccCCcccc-cccccccccceeccCC-CCcccChh-hhc-cccccccccCCC
Confidence            555666666554 33321111 1234566666666666 45421111 111 335777777763

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=95.47  E-value=3.3e-05  Score=61.38  Aligned_cols=108  Identities=11%  Similarity=0.161  Sum_probs=65.7

Q ss_pred             EeccCCCCCChHHHHHhhhhcCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCC
Q 026356           26 IDLREMNNAGNRLVAALSIPRYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPE  105 (240)
Q Consensus        26 L~l~~~~~~~~~~l~~l~~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~  105 (240)
                      |+|+++...+...+.. .+.++++|++|++++|+++...--..     ...+++|++|+++++ .++..... ....++.
T Consensus        55 L~L~~~~l~g~~~lp~-~l~~L~~L~~L~Ls~~N~l~g~iP~~-----i~~L~~L~~L~Ls~N-~l~~~~~~-~~~~~~~  126 (313)
T d1ogqa_          55 LDLSGLNLPKPYPIPS-SLANLPYLNFLYIGGINNLVGPIPPA-----IAKLTQLHYLYITHT-NVSGAIPD-FLSQIKT  126 (313)
T ss_dssp             EEEECCCCSSCEECCG-GGGGCTTCSEEEEEEETTEESCCCGG-----GGGCTTCSEEEEEEE-CCEEECCG-GGGGCTT
T ss_pred             EECCCCCCCCCCCCCh-HHhcCccccccccccccccccccccc-----cccccccchhhhccc-cccccccc-cccchhh
Confidence            9999887443212211 23589999999999866554321111     234589999999985 55432111 1235788


Q ss_pred             CCEEEecCCCCCCHHHHHHHHHcCCcCCEEeccCCCCCC
Q 026356          106 LKVFSIYWNVRVTDIGIQHLVKNCKHIIDLNLSGCKNLL  144 (240)
Q Consensus       106 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~lt  144 (240)
                      |+.++++++... .. +..-...+++|+.++++++ .++
T Consensus       127 L~~l~l~~N~~~-~~-~p~~l~~l~~L~~l~l~~n-~l~  162 (313)
T d1ogqa_         127 LVTLDFSYNALS-GT-LPPSISSLPNLVGITFDGN-RIS  162 (313)
T ss_dssp             CCEEECCSSEEE-SC-CCGGGGGCTTCCEEECCSS-CCE
T ss_pred             hccccccccccc-cc-CchhhccCcccceeecccc-ccc
Confidence            999998876321 11 1111246788899998888 444

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=95.31  E-value=0.0049  Score=48.51  Aligned_cols=12  Identities=0%  Similarity=0.083  Sum_probs=6.5

Q ss_pred             CCcCCEEeccCC
Q 026356          129 CKHIIDLNLSGC  140 (240)
Q Consensus       129 ~~~L~~L~l~~c  140 (240)
                      +++|+.|+++++
T Consensus       119 l~~L~~L~l~~~  130 (353)
T d1jl5a_         119 SSFLKIIDVDNN  130 (353)
T ss_dssp             CTTCCEEECCSS
T ss_pred             hccceeeccccc
Confidence            445555555555

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=95.18  E-value=6.6e-05  Score=59.60  Aligned_cols=109  Identities=16%  Similarity=0.179  Sum_probs=67.1

Q ss_pred             CCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHc
Q 026356           49 HVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHLVKN  128 (240)
Q Consensus        49 ~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~  128 (240)
                      .++.|+++++ .+....  .+... ...+++|++|++++|+.++...-..++ .+++|++|+++++ .+..... .....
T Consensus        51 ~v~~L~L~~~-~l~g~~--~lp~~-l~~L~~L~~L~Ls~~N~l~g~iP~~i~-~L~~L~~L~Ls~N-~l~~~~~-~~~~~  123 (313)
T d1ogqa_          51 RVNNLDLSGL-NLPKPY--PIPSS-LANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHT-NVSGAIP-DFLSQ  123 (313)
T ss_dssp             CEEEEEEECC-CCSSCE--ECCGG-GGGCTTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEE-CCEEECC-GGGGG
T ss_pred             EEEEEECCCC-CCCCCC--CCChH-HhcCccccccccccccccccccccccc-cccccchhhhccc-ccccccc-ccccc
Confidence            5889999984 444210  00011 245699999999987655432212333 4899999999987 3432111 12346


Q ss_pred             CCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCC
Q 026356          129 CKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRY  166 (240)
Q Consensus       129 ~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c  166 (240)
                      +++|+.++++++ .+.......+ .++++|+.++++++
T Consensus       124 ~~~L~~l~l~~N-~~~~~~p~~l-~~l~~L~~l~l~~n  159 (313)
T d1ogqa_         124 IKTLVTLDFSYN-ALSGTLPPSI-SSLPNLVGITFDGN  159 (313)
T ss_dssp             CTTCCEEECCSS-EEESCCCGGG-GGCTTCCEEECCSS
T ss_pred             hhhhcccccccc-cccccCchhh-ccCcccceeecccc
Confidence            789999999988 3332211122 35788888888875

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.00076  Score=47.88  Aligned_cols=87  Identities=18%  Similarity=0.245  Sum_probs=44.6

Q ss_pred             cCCCCceEeccCCCCCcHHHHHHHHHHccCCCCCccEEecCCCCCCcHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHH
Q 026356           46 RYRHVREINLEFAQDIEDRHLELLKTKCLGSLQDLESLNLNGCQKISDKGIEIISSTCPELKVFSIYWNVRVTDIGIQHL  125 (240)
Q Consensus        46 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l  125 (240)
                      ..++|++|++.+.+.+.......     ...+++|+.|+++++ +++.-.-..+ ..+++|++|+++++ +++.-.-. +
T Consensus        29 ~l~~l~~L~l~~n~~l~~i~~~~-----f~~l~~L~~L~Ls~N-~l~~i~~~~f-~~l~~L~~L~Ls~N-~l~~l~~~-~   99 (156)
T d2ifga3          29 GAENLTELYIENQQHLQHLELRD-----LRGLGELRNLTIVKS-GLRFVAPDAF-HFTPRLSRLNLSFN-ALESLSWK-T   99 (156)
T ss_dssp             SCSCCSEEECCSCSSCCEECGGG-----SCSCCCCSEEECCSS-CCCEECTTGG-GSCSCCCEEECCSS-CCSCCCST-T
T ss_pred             CccccCeeecCCCccccccCchh-----hccccccCcceeecc-ccCCcccccc-cccccccceeccCC-CCcccChh-h
Confidence            55677777776533344322221     234577777777773 5543211111 24677777777765 33311100 1


Q ss_pred             HHcCCcCCEEeccCCCC
Q 026356          126 VKNCKHIIDLNLSGCKN  142 (240)
Q Consensus       126 ~~~~~~L~~L~l~~c~~  142 (240)
                      . ...+|+.|++++++.
T Consensus       100 ~-~~~~l~~L~L~~Np~  115 (156)
T d2ifga3         100 V-QGLSLQELVLSGNPL  115 (156)
T ss_dssp             T-CSCCCCEEECCSSCC
T ss_pred             h-ccccccccccCCCcc
Confidence            1 223577777777643

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=92.86  E-value=0.017  Score=45.15  Aligned_cols=57  Identities=12%  Similarity=0.089  Sum_probs=36.8

Q ss_pred             cCCcCCEEeccCCCCCCHHHHHHHHHhCCCCcEEeccCCCCCCHHHHHHHHHhChhhhhHHHhcCCccceeecccCCCCC
Q 026356          128 NCKHIIDLNLSGCKNLLDKSLQLIADNYQELESLNLTRYVNMILLGLFYIWSNNILLMSEFIYHGIRFFQAVQINSSNGG  207 (240)
Q Consensus       128 ~~~~L~~L~l~~c~~ltd~~l~~l~~~~~~L~~L~l~~c~~it~~~~~~l~~~~~~~l~~l~~~~~~~L~~l~l~~~~~~  207 (240)
                      .+++|++|++++| .++.     +....++|+.|++++| ++++-         +        ..++.|+.++++++.+.
T Consensus       282 ~~~~L~~L~Ls~N-~l~~-----lp~~~~~L~~L~L~~N-~L~~l---------~--------~~~~~L~~L~L~~N~L~  337 (353)
T d1jl5a_         282 LPPSLEELNVSNN-KLIE-----LPALPPRLERLIASFN-HLAEV---------P--------ELPQNLKQLHVEYNPLR  337 (353)
T ss_dssp             CCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSS-CCSCC---------C--------CCCTTCCEEECCSSCCS
T ss_pred             cCCCCCEEECCCC-ccCc-----cccccCCCCEEECCCC-cCCcc---------c--------cccCCCCEEECcCCcCC
Confidence            4578888888888 5653     1234678888888875 56541         0        11345777777777765


Q ss_pred             c
Q 026356          208 D  208 (240)
Q Consensus       208 ~  208 (240)
                      .
T Consensus       338 ~  338 (353)
T d1jl5a_         338 E  338 (353)
T ss_dssp             S
T ss_pred             C
Confidence            4