Citrus Sinensis ID: 026360

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Protein Sequence
MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSNSELKYCSYAMLRESRICLTDTSREKIFLFKIT
Secondary Structure (PSIPRED)
ccHHHHHHccHHHHHHHHcccccccccccccccccccEEEEEcccHHHHHHHHHHcccccEEEEEccccccHHHHHHcccEEcccHHHHcccccEEEEcccccHHHHccccHHHHHccccccEEEEccccccccHHHHHHHHHHcccEEEEEcccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHccHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
HHHHHHHccHHHHHHHHHcccccHHHHHcccccccccEEEEEcccHHHHHHHHHHHHHccEEEEEccccccHHHHHHcccEEcccHHHHHHHccEEEEcccccccccccEcccHHHHccccEEEEEcccHHHEcHHHHHHHHHHccEEEEEEccccccccccccHHHccccEccccccHHHcHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHccccHHHHHHHHHHcccEcc
Coil and Loop (DISEMBL)
MRILILVRnflpghhqviSGEWNVAGVAYRaydlegktvgtvgcgrIGKLLLQRlkpfncnllyhdrvkmdpqleketgakfeedldtmlpkcdivvvntpltektrgmfdKDRIAKMKKGVLIVNNARGAIMDTQAVVDACssghiagysgdvwnpqpapkdhpwrympnqamtphvsgttidAQVIVHFFPVFMRLFTSFLSHKSNSELKYCSYAMLRESRICLTDTSREKIFLFKIT
Flexible Loop (DISEMBL)
MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFeedldtmlpkcdivvvntpltektrgmfdkdriakMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSNSELKYCSYAMLRESricltdtsrekiflfkit
Low Complexity Region (SEG)
MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSNSELKYCSYAMLRESRICLTDTSREKIFLFKIT
Disordered region (IsUnstruct)
**ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM***********FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP*******PWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSNSELKYCSYAMLRESRICLTDTSREKIFLFK**
Disordered Region (DISOPRED)
MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSNSELKYCSYAMLRESRICLTDTSREKIFLFKIT
Disordered Region (DISEMBL)
MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSNSELKYCSYAMLRESRICLTDTSREKIFLFKIT
Disordered Region (DISPRO)
MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSNSELKYCSYAMLRESRICLTDTSREKIFLFKIT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSNSELKYCSYAMLRESRICLTDTSREKIFLFKIT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	240	2.2.26 [Sep-21-2011]
Q07511	381	Formate dehydrogenase, mi	N/A	no	0.779	0.490	0.882	1e-100
Q9SXP2	376	Formate dehydrogenase 1,	yes	no	0.779	0.497	0.850	4e-98
Q9ZRI8	377	Formate dehydrogenase, mi	N/A	no	0.779	0.496	0.844	3e-97
Q67U69	378	Formate dehydrogenase 2,	no	no	0.779	0.494	0.834	7e-97
Q9S7E4	384	Formate dehydrogenase, mi	yes	no	0.779	0.486	0.818	3e-93
Q03134	365	Probable formate dehydrog	yes	no	0.779	0.512	0.549	1e-57
O13437	364	Formate dehydrogenase OS=	N/A	no	0.775	0.510	0.510	2e-52
Q07103	375	Formate dehydrogenase OS=	N/A	no	0.858	0.549	0.509	5e-51
P33677	362	Formate dehydrogenase OS=	N/A	no	0.85	0.563	0.452	7e-50
P33160	401	Formate dehydrogenase OS=	N/A	no	0.779	0.466	0.497	6e-49

>sp|Q07511|FDH_SOLTU Formate dehydrogenase, mitochondrial OS=Solanum tuberosum GN=FDH1 PE=1 SV=2

 Score =  363 bits (931), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 165/187 (88%), Positives = 179/187 (95%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILILVRNFLPGHHQVI+GEWNVA +A+RAYDLEGKTVGTVG GRIG+LLLQRLKPFNC
Sbjct: 159 MRILILVRNFLPGHHQVINGEWNVAAIAHRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNC 218

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+KMD +LE + GAKFEEDLD ML KCDIVV+NTPLTEKT+GMFDK+RIAK+KK
Sbjct: 219 NLLYHDRLKMDSELENQIGAKFEEDLDKMLSKCDIVVINTPLTEKTKGMFDKERIAKLKK 278

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIMDTQAVVDAC+SGHIAGYSGDVW PQPAPKDHPWRYMPNQAMTPH+SG
Sbjct: 279 GVLIVNNARGAIMDTQAVVDACNSGHIAGYSGDVWYPQPAPKDHPWRYMPNQAMTPHISG 338

Query: 181 TTIDAQV 187
           TTIDAQ+
Sbjct: 339 TTIDAQL 345

Involved in formate-dependent oxygen uptake coupled to ATP synthesis.
Solanum tuberosum (taxid: 4113)
EC: 1EC: .EC: 2EC: .EC: 1EC: .EC: 2

>sp|Q9SXP2|FDH1_ORYSJ Formate dehydrogenase 1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486800 PE=1 SV=2

 Score =  357 bits (916), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 159/187 (85%), Positives = 177/187 (94%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILIL+RNFLPG+ QV+ GEWNVAG+AYRAYDLEGKTVGTVG GRIG+LLLQRLKPFNC
Sbjct: 154 MRILILLRNFLPGYQQVVHGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNC 213

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+K+DP+LEKE GAK+EEDLD MLPKCD++V+NTPLTEKTRGMF+K+RIAKMKK
Sbjct: 214 NLLYHDRLKIDPELEKEIGAKYEEDLDAMLPKCDVIVINTPLTEKTRGMFNKERIAKMKK 273

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GV+IVNNARGAIMDTQAV DACSSG +AGY GDVW PQPAPKDHPWRYMPN AMTPH+SG
Sbjct: 274 GVIIVNNARGAIMDTQAVADACSSGQVAGYGGDVWFPQPAPKDHPWRYMPNHAMTPHISG 333

Query: 181 TTIDAQV 187
           TTIDAQ+
Sbjct: 334 TTIDAQL 340

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

>sp|Q9ZRI8|FDH_HORVU Formate dehydrogenase, mitochondrial OS=Hordeum vulgare PE=2 SV=1

 Score =  354 bits (908), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 158/187 (84%), Positives = 177/187 (94%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILIL+RNFLPG+ QV+ GEWNVAG+A+RAYDLEGKTVGTVG GR G+LLLQRLKPFNC
Sbjct: 155 MRILILLRNFLPGYQQVVKGEWNVAGIAHRAYDLEGKTVGTVGAGRYGRLLLQRLKPFNC 214

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR++++P+LEKE GAKFEEDLD MLPKCD+VV+NTPLTEKTRGMF+K++IAKMKK
Sbjct: 215 NLLYHDRLQINPELEKEIGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKEKIAKMKK 274

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GV+IVNNARGAIMDTQAV DACSSGHIAGY GDVW PQPAPKDHPWRYMPN AMTPH+SG
Sbjct: 275 GVIIVNNARGAIMDTQAVADACSSGHIAGYGGDVWFPQPAPKDHPWRYMPNHAMTPHISG 334

Query: 181 TTIDAQV 187
           TTIDAQ+
Sbjct: 335 TTIDAQL 341

Hordeum vulgare (taxid: 4513)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

>sp|Q67U69|FDH2_ORYSJ Formate dehydrogenase 2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486900 PE=2 SV=1

 Score =  353 bits (905), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 156/187 (83%), Positives = 175/187 (93%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRIL+L+RNFLPGHHQ+++GEWNVAG+A+R YDLEGKTVGTVG GRIG+LLLQRLKPFNC
Sbjct: 156 MRILLLLRNFLPGHHQIVNGEWNVAGIAHRTYDLEGKTVGTVGAGRIGRLLLQRLKPFNC 215

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NL+YHDRVK+DP+LEKE GAK+EEDLD MLPKCD+VV+N PLTEKTRGMF+K+RIAKMKK
Sbjct: 216 NLMYHDRVKIDPELEKEIGAKYEEDLDAMLPKCDVVVINMPLTEKTRGMFNKERIAKMKK 275

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GV IVNNARGAIMDTQAV DAC+SGH+AGY GDVW PQPAPKDHPWRYMPN AMTPH SG
Sbjct: 276 GVTIVNNARGAIMDTQAVADACASGHVAGYGGDVWFPQPAPKDHPWRYMPNHAMTPHCSG 335

Query: 181 TTIDAQV 187
           TTID Q+
Sbjct: 336 TTIDGQL 342

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

>sp|Q9S7E4|FDH_ARATH Formate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=FDH1 PE=1 SV=1

 Score =  341 bits (874), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 153/187 (81%), Positives = 173/187 (92%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILIL+RNF+PG++QV+ GEWNVAG+AYRAYDLEGKT+GTVG GRIGKLLLQRLKPF C
Sbjct: 162 MRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGC 221

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR++M P+LEKETGAKF EDL+ MLPKCD++V+N PLTEKTRGMF+K+ I K+KK
Sbjct: 222 NLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKK 281

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIM+ QAVVDA  SGHI GYSGDVW+PQPAPKDHPWRYMPNQAMTPH SG
Sbjct: 282 GVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSG 341

Query: 181 TTIDAQV 187
           TTIDAQ+
Sbjct: 342 TTIDAQL 348

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

>sp|Q03134|FDH_EMENI Probable formate dehydrogenase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=aciA PE=2 SV=3

 Score =  223 bits (567), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 106/193 (54%), Positives = 141/193 (73%), Gaps = 6/193 (3%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M IL+LVRNF+P H Q+ +G+WNVA VA   +DLE K VGTVG GRIG+ +L+RLKPF+C
Sbjct: 130 MTILLLVRNFVPAHDQIRNGDWNVAAVAKNEFDLENKVVGTVGVGRIGERVLRRLKPFDC 189

Query: 61  -NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119
             LLY+D   + P++EKE GA+  + L+ M+ +CD+V +N PL EKTRG+F+K+ I+KMK
Sbjct: 190 KELLYYDYQPLRPEVEKEIGARRVDSLEEMVSQCDVVTINCPLHEKTRGLFNKELISKMK 249

Query: 120 KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN-----QAM 174
            G  +VN ARGAI+  + V +A  SGH+ GY GDVW PQPAPK+HP RY  +      A 
Sbjct: 250 PGSWLVNTARGAIVVKEDVAEALKSGHLRGYGGDVWFPQPAPKEHPLRYAEHPWGGGNAT 309

Query: 175 TPHVSGTTIDAQV 187
            PH+SGT+IDAQ+
Sbjct: 310 VPHMSGTSIDAQI 322

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

>sp|O13437|FDH_CANBO Formate dehydrogenase OS=Candida boidinii GN=FDH1 PE=1 SV=1

 Score =  206 bits (523), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 98/192 (51%), Positives = 133/192 (69%), Gaps = 6/192 (3%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFN- 59
           M +L+LVRNF+P H Q+I+ +W VA +A  AYD+EGKT+ T+G GRIG  +L+RL PFN 
Sbjct: 129 MTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLLPFNP 188

Query: 60  CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119
             LLY+D   +  + E++ GA+  E+++ ++ + DIV VN PL   T+G+ +K+ ++K K
Sbjct: 189 KELLYYDYQALPKEAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFK 248

Query: 120 KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ-----AM 174
           KG  +VN ARGAI   + V  A  SG + GY GDVW PQPAPKDHPWR M N+     AM
Sbjct: 249 KGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAM 308

Query: 175 TPHVSGTTIDAQ 186
           TPH SGTT+DAQ
Sbjct: 309 TPHYSGTTLDAQ 320

NAD(+)-dependent enzyme which catalyzes the final step in the menthanol oxidation pathway. Involved in detoxification of formate.

Candida boidinii (taxid: 5477)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

>sp|Q07103|FDH_NEUCR Formate dehydrogenase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=fdh PE=2 SV=1

 Score =  201 bits (510), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 109/214 (50%), Positives = 144/214 (67%), Gaps = 8/214 (3%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M IL+LVRNF+P H Q+  G W+VA  A   +DLEGK VGTVG GRIG+ +L+RLKPF+C
Sbjct: 130 MTILVLVRNFVPAHEQIQEGRWDVAEAAKNEFDLEGKVVGTVGVGRIGERVLRRLKPFDC 189

Query: 61  -NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119
             LLY+D   +  + E E G +   DL+ ML +CD+V +N PL EKT+G+F+K+ I+KMK
Sbjct: 190 KELLYYDYQPLSAEKEAEIGCRRVADLEEMLAQCDVVTINCPLHEKTQGLFNKELISKMK 249

Query: 120 KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN-----QAM 174
           KG  +VN ARGAI+  + V +A  SGH+ GY GDVW PQPAP+DHP RY  N      AM
Sbjct: 250 KGSWLVNTARGAIVVKEDVAEALKSGHLRGYGGDVWFPQPAPQDHPLRYAKNPFGGGNAM 309

Query: 175 TPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN 208
            PH+SGT++DAQ    +      +  S+LS K +
Sbjct: 310 VPHMSGTSLDAQ--KRYAAGTKAIIESYLSGKHD 341

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

>sp|P33677|FDH_PICAN Formate dehydrogenase OS=Pichia angusta GN=FMDH PE=3 SV=2

 Score =  197 bits (500), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 96/212 (45%), Positives = 133/212 (62%), Gaps = 8/212 (3%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFN- 59
           M +L+LVRNF+P H Q+ISG WNVA +A  ++D+EGK + T+G GRIG  +L+RL  FN 
Sbjct: 129 MTMLVLVRNFVPAHEQIISGGWNVAEIAKDSFDIEGKVIATIGAGRIGYRVLERLVAFNP 188

Query: 60  CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119
             LLY+D   +  + E++ GA+   D+  ++ + DIV +N PL   ++G+ + + +   K
Sbjct: 189 KELLYYDYQSLSKEAEEKVGARRVHDIKELVAQADIVTINCPLHAGSKGLVNAELLKHFK 248

Query: 120 KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ-----AM 174
           KG  +VN ARGAI   + V  A  SG + GY GDVW PQPAPKDHPWR M N+     AM
Sbjct: 249 KGAWLVNTARGAICVAEDVAAAVKSGQLRGYGGDVWFPQPAPKDHPWRSMANKYGAGNAM 308

Query: 175 TPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHK 206
           TPH SG+ IDAQ  V +      +  SF + K
Sbjct: 309 TPHYSGSVIDAQ--VRYAQGTKNILESFFTQK 338

Pichia angusta (taxid: 870730)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

>sp|P33160|FDH_PSESR Formate dehydrogenase OS=Pseudomonas sp. (strain 101) PE=1 SV=3

 Score =  194 bits (492), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 93/187 (49%), Positives = 116/187 (62%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M IL LVRN+LP H     G WN+A     AYDLE   VGTV  GRIG  +L+RL PF+ 
Sbjct: 157 MMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDV 216

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           +L Y DR ++   +EKE    +    + M P CD+V +N PL  +T  M + + +   K+
Sbjct: 217 HLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKR 276

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           G  IVN ARG + D  AV  A  SG +AGY+GDVW PQPAPKDHPWR MP   MTPH+SG
Sbjct: 277 GAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG 336

Query: 181 TTIDAQV 187
           TT+ AQ 
Sbjct: 337 TTLTAQA 343

Pseudomonas sp. (strain 101) (taxid: 33067)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
224129102	387	formate dehydrogenase [Populus trichocar	0.779	0.483	0.893	1e-100
147810156	383	hypothetical protein VITISV_036417 [Viti	0.779	0.488	0.887	1e-100
225452472	383	PREDICTED: formate dehydrogenase, mitoch	0.779	0.488	0.887	1e-100
255552590	386	formate dehydrogenase, putative [Ricinus	0.779	0.484	0.887	1e-100
211970690	386	formate dehydrogenase [Lotus japonicus]	0.779	0.484	0.871	6e-99
26454627	381	RecName: Full=Formate dehydrogenase, mit	0.779	0.490	0.882	4e-98
449446660	384	PREDICTED: formate dehydrogenase, mitoch	0.779	0.486	0.860	5e-98
350538487	381	formate dehydrogenase [Solanum lycopersi	0.779	0.490	0.877	7e-97
449528140	315	PREDICTED: LOW QUALITY PROTEIN: formate	0.779	0.593	0.855	1e-96
218198209	376	hypothetical protein OsI_23019 [Oryza sa	0.779	0.497	0.850	2e-96

>gi|224129102|ref|XP_002320501.1| formate dehydrogenase [Populus trichocarpa] gi|118486031|gb|ABK94859.1| unknown [Populus trichocarpa] gi|222861274|gb|EEE98816.1| formate dehydrogenase [Populus trichocarpa]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 167/187 (89%), Positives = 180/187 (96%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILILVRNFLPG+HQVI+GEWNVA +AYRAYDLEGKTVGTVG GRIGKLLLQRLKPFNC
Sbjct: 165 MRILILVRNFLPGYHQVINGEWNVAAIAYRAYDLEGKTVGTVGAGRIGKLLLQRLKPFNC 224

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+KMDP+LEK+TGAKFEEDLD++L KCD+VV+NTPLTEKTRGMFDK+RIAKMKK
Sbjct: 225 NLLYHDRLKMDPELEKQTGAKFEEDLDSLLSKCDVVVINTPLTEKTRGMFDKERIAKMKK 284

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIMDTQAVVDACSSG I GYSGDVWNPQPAPKDHPWRYMPN AMTPH+SG
Sbjct: 285 GVLIVNNARGAIMDTQAVVDACSSGQIGGYSGDVWNPQPAPKDHPWRYMPNHAMTPHISG 344

Query: 181 TTIDAQV 187
           TTID Q+
Sbjct: 345 TTIDGQL 351

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147810156|emb|CAN71454.1| hypothetical protein VITISV_036417 [Vitis vinifera]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 166/187 (88%), Positives = 180/187 (96%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILILVRNFLPGHHQVISGEWNVAG+AYRAYDLEGKTVGTVG GRIG+LLLQRLKPFNC
Sbjct: 161 MRILILVRNFLPGHHQVISGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNC 220

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+KMDP+LE + GAKFEED+D MLPKCDI+V+N PLTEKT+GMF+K+RIAK+KK
Sbjct: 221 NLLYHDRIKMDPELENQIGAKFEEDVDVMLPKCDIIVINMPLTEKTKGMFNKERIAKLKK 280

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIMDTQAV DACSSGHIAGYSGDVW PQPAPKDHPWRYMPNQAMTPH+SG
Sbjct: 281 GVLIVNNARGAIMDTQAVADACSSGHIAGYSGDVWYPQPAPKDHPWRYMPNQAMTPHISG 340

Query: 181 TTIDAQV 187
           TTIDAQ+
Sbjct: 341 TTIDAQL 347

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452472|ref|XP_002278444.1| PREDICTED: formate dehydrogenase, mitochondrial [Vitis vinifera] gi|296087673|emb|CBI34929.3| unnamed protein product [Vitis vinifera]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 166/187 (88%), Positives = 180/187 (96%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILILVRNFLPGHHQVISGEWNVAG+AYRAYDLEGKTVGTVG GRIG+LLLQRLKPFNC
Sbjct: 161 MRILILVRNFLPGHHQVISGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNC 220

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+KMDP+LE + GAKFEED+D MLPKCDI+V+N PLTEKT+GMF+K+RIAK+KK
Sbjct: 221 NLLYHDRIKMDPELENQIGAKFEEDVDVMLPKCDIIVINMPLTEKTKGMFNKERIAKLKK 280

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIMDTQAV DACSSGHIAGYSGDVW PQPAPKDHPWRYMPNQAMTPH+SG
Sbjct: 281 GVLIVNNARGAIMDTQAVADACSSGHIAGYSGDVWYPQPAPKDHPWRYMPNQAMTPHISG 340

Query: 181 TTIDAQV 187
           TTIDAQ+
Sbjct: 341 TTIDAQL 347

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552590|ref|XP_002517338.1| formate dehydrogenase, putative [Ricinus communis] gi|223543349|gb|EEF44880.1| formate dehydrogenase, putative [Ricinus communis]

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 166/187 (88%), Positives = 180/187 (96%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILILVRNFLPG+HQVISG+WNVAG+AYRAYDLEGKTVGTVG GRIG+LLLQRLKPFNC
Sbjct: 164 MRILILVRNFLPGYHQVISGDWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNC 223

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+KMDP+LE +TGAK+EEDLD MLPKCDIVV+NTPLTEKTRG+F+KDRIAK+KK
Sbjct: 224 NLLYHDRIKMDPELENQTGAKYEEDLDAMLPKCDIVVINTPLTEKTRGLFNKDRIAKLKK 283

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIMDTQAV DACSSGHI GYSGDVW PQPA KDHPWRYMPNQAMTPH+SG
Sbjct: 284 GVLIVNNARGAIMDTQAVADACSSGHIGGYSGDVWYPQPASKDHPWRYMPNQAMTPHISG 343

Query: 181 TTIDAQV 187
           TTIDAQ+
Sbjct: 344 TTIDAQL 350

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|211970690|emb|CAR98204.1| formate dehydrogenase [Lotus japonicus]

 Score =  365 bits (938), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 163/187 (87%), Positives = 180/187 (96%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILILVRNFLPG+HQ I+GEWNVAG+A+RAYDLEGKT+GTVG GRIGKLLLQRLKPFNC
Sbjct: 164 MRILILVRNFLPGYHQAITGEWNVAGIAHRAYDLEGKTIGTVGAGRIGKLLLQRLKPFNC 223

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+KM+P+LEKE GAKFEEDLD MLPKCD++V+NTPLT+KTRG+FDK+RIAK+KK
Sbjct: 224 NLLYHDRLKMEPELEKEIGAKFEEDLDAMLPKCDVIVINTPLTDKTRGLFDKNRIAKLKK 283

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIMDTQAV DACSSGHIAGYSGDVW PQPAPKDHPWRYMPN AMTPH+SG
Sbjct: 284 GVLIVNNARGAIMDTQAVADACSSGHIAGYSGDVWFPQPAPKDHPWRYMPNHAMTPHISG 343

Query: 181 TTIDAQV 187
           TTIDAQ+
Sbjct: 344 TTIDAQL 350

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26454627|sp|Q07511.2|FDH_SOLTU RecName: Full=Formate dehydrogenase, mitochondrial; AltName: Full=NAD-dependent formate dehydrogenase; Short=FDH; Flags: Precursor gi|11991527|emb|CAA79702.2| mitochondrial formate dehydrogenase precursor [Solanum tuberosum]

 Score =  363 bits (931), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 165/187 (88%), Positives = 179/187 (95%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILILVRNFLPGHHQVI+GEWNVA +A+RAYDLEGKTVGTVG GRIG+LLLQRLKPFNC
Sbjct: 159 MRILILVRNFLPGHHQVINGEWNVAAIAHRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNC 218

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+KMD +LE + GAKFEEDLD ML KCDIVV+NTPLTEKT+GMFDK+RIAK+KK
Sbjct: 219 NLLYHDRLKMDSELENQIGAKFEEDLDKMLSKCDIVVINTPLTEKTKGMFDKERIAKLKK 278

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIMDTQAVVDAC+SGHIAGYSGDVW PQPAPKDHPWRYMPNQAMTPH+SG
Sbjct: 279 GVLIVNNARGAIMDTQAVVDACNSGHIAGYSGDVWYPQPAPKDHPWRYMPNQAMTPHISG 338

Query: 181 TTIDAQV 187
           TTIDAQ+
Sbjct: 339 TTIDAQL 345

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446660|ref|XP_004141089.1| PREDICTED: formate dehydrogenase, mitochondrial-like [Cucumis sativus]

 Score =  363 bits (931), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 161/187 (86%), Positives = 182/187 (97%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILILVRNFLPG+HQV++GEWNVAG+A+RAYDLEGKTVGTVG GRIGKLLLQRLKPFNC
Sbjct: 162 MRILILVRNFLPGYHQVVNGEWNVAGIAHRAYDLEGKTVGTVGAGRIGKLLLQRLKPFNC 221

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+K+DP+LEK+ GA+FEEDLD MLPKCD++V+NTPLT+KTRG+F+K+RIAK KK
Sbjct: 222 NLLYHDRLKIDPELEKQIGAQFEEDLDAMLPKCDVLVINTPLTDKTRGLFNKERIAKCKK 281

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIMDTQAVVDAC+SGH+ GYSGDVWNPQPAPKDHPWRYMPNQAMTPH+SG
Sbjct: 282 GVLIVNNARGAIMDTQAVVDACNSGHVGGYSGDVWNPQPAPKDHPWRYMPNQAMTPHISG 341

Query: 181 TTIDAQV 187
           TTIDAQ+
Sbjct: 342 TTIDAQL 348

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350538487|ref|NP_001234857.1| formate dehydrogenase [Solanum lycopersicum] gi|56562181|emb|CAH60893.1| formate dehydrogenase [Solanum lycopersicum]

 Score =  359 bits (921), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 164/187 (87%), Positives = 178/187 (95%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILILVRNFLPGHHQVI+GEWNVA +A+RAYDLEGKTVGTVG GRIG+LLLQRLKPFNC
Sbjct: 159 MRILILVRNFLPGHHQVINGEWNVAAIAHRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNC 218

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+KMD +LE + GAKFEEDLD ML KCDIVV+NTPLTEKT+GMFDK+RIAK+KK
Sbjct: 219 NLLYHDRLKMDSELENQIGAKFEEDLDKMLSKCDIVVINTPLTEKTKGMFDKERIAKLKK 278

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIMDTQAVVDAC+SGHIAGYSGDVW PQPAPKDH WRYMPNQAMTPH+SG
Sbjct: 279 GVLIVNNARGAIMDTQAVVDACNSGHIAGYSGDVWYPQPAPKDHLWRYMPNQAMTPHISG 338

Query: 181 TTIDAQV 187
           TTIDAQ+
Sbjct: 339 TTIDAQL 345

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449528140|ref|XP_004171064.1| PREDICTED: LOW QUALITY PROTEIN: formate dehydrogenase, mitochondrial-like, partial [Cucumis sativus]

 Score =  358 bits (918), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 160/187 (85%), Positives = 181/187 (96%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILILVRNFLPG+HQV++GEWNVAG+A+RAYDLEGKTVGTVG GRIGKLLLQRLKPFNC
Sbjct: 93  MRILILVRNFLPGYHQVVNGEWNVAGIAHRAYDLEGKTVGTVGAGRIGKLLLQRLKPFNC 152

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+K+DP+LEK+ GA+FEEDLD MLPKCD++V+NTPLT+KTRG+F+K+RIAK KK
Sbjct: 153 NLLYHDRLKIDPELEKQIGAQFEEDLDAMLPKCDVLVINTPLTDKTRGLFNKERIAKCKK 212

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIMDTQAVVDAC+SGH+ GYSGDVWNPQPAPKDHPWRYM NQAMTPH+SG
Sbjct: 213 GVLIVNNARGAIMDTQAVVDACNSGHVGGYSGDVWNPQPAPKDHPWRYMANQAMTPHISG 272

Query: 181 TTIDAQV 187
           TTIDAQ+
Sbjct: 273 TTIDAQL 279

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218198209|gb|EEC80636.1| hypothetical protein OsI_23019 [Oryza sativa Indica Group]

 Score =  357 bits (917), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 159/187 (85%), Positives = 177/187 (94%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILIL+RNFLPG+ QV+ GEWNVAG+AYRAYDLEGKTVGTVG GRIG+LLLQRLKPFNC
Sbjct: 154 MRILILLRNFLPGYQQVVQGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNC 213

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+K+DP+LEKE GAK+EEDLD MLPKCD++V+NTPLTEKTRGMF+K+RIAKMKK
Sbjct: 214 NLLYHDRLKIDPELEKEIGAKYEEDLDAMLPKCDVIVINTPLTEKTRGMFNKERIAKMKK 273

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GV+IVNNARGAIMDTQAV DACSSG +AGY GDVW PQPAPKDHPWRYMPN AMTPH+SG
Sbjct: 274 GVIIVNNARGAIMDTQAVADACSSGQVAGYGGDVWFPQPAPKDHPWRYMPNHAMTPHISG 333

Query: 181 TTIDAQV 187
           TTIDAQ+
Sbjct: 334 TTIDAQL 340

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
TAIR|locus:2185500	384	FDH "formate dehydrogenase" [A	0.779	0.486	0.818	3.8e-85
ASPGD|ASPL0000003895	365	aciA [Emericella nidulans (tax	0.779	0.512	0.549	4.3e-54
UNIPROTKB|O13437	364	FDH1 "Formate dehydrogenase" [	0.775	0.510	0.510	4.1e-49
CGD|CAL0000982	379	FDH1 [Candida albicans (taxid:	0.770	0.488	0.495	2.5e-42
UNIPROTKB|Q59QN6	379	FDH1 "Potential NAD-formate de	0.770	0.488	0.495	2.5e-42
SGD|S000005915	376	FDH1 "NAD(+)-dependent formate	0.766	0.489	0.470	3.2e-42
CGD|CAL0001883	379	orf19.1117 [Candida albicans (	0.770	0.488	0.466	1.6e-40
UNIPROTKB|Q59N71	379	FDH98 "Potential NAD-formate d	0.770	0.488	0.466	1.6e-40
SGD|S000005218	350	GOR1 "Glyoxylate reductase" [S	0.641	0.44	0.440	2.8e-27
CGD|CAL0006135	342	GOR1 [Candida albicans (taxid:	0.741	0.520	0.352	1.2e-26

TAIR|locus:2185500 FDH "formate dehydrogenase" [Arabidopsis thaliana (taxid:3702)]

 Score = 852 (305.0 bits), Expect = 3.8e-85, P = 3.8e-85
 Identities = 153/187 (81%), Positives = 173/187 (92%)

Query:     1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
             MRILIL+RNF+PG++QV+ GEWNVAG+AYRAYDLEGKT+GTVG GRIGKLLLQRLKPF C
Sbjct:   162 MRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGC 221

Query:    61 NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
             NLLYHDR++M P+LEKETGAKF EDL+ MLPKCD++V+N PLTEKTRGMF+K+ I K+KK
Sbjct:   222 NLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKK 281

Query:   121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
             GVLIVNNARGAIM+ QAVVDA  SGHI GYSGDVW+PQPAPKDHPWRYMPNQAMTPH SG
Sbjct:   282 GVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSG 341

Query:   181 TTIDAQV 187
             TTIDAQ+
Sbjct:   342 TTIDAQL 348

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA;TAS

GO:0008152 "metabolic process" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009611 "response to wounding" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

ASPGD|ASPL0000003895 aciA [Emericella nidulans (taxid:162425)]

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 106/193 (54%), Positives = 141/193 (73%)

Query:     1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
             M IL+LVRNF+P H Q+ +G+WNVA VA   +DLE K VGTVG GRIG+ +L+RLKPF+C
Sbjct:   130 MTILLLVRNFVPAHDQIRNGDWNVAAVAKNEFDLENKVVGTVGVGRIGERVLRRLKPFDC 189

Query:    61 N-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119
               LLY+D   + P++EKE GA+  + L+ M+ +CD+V +N PL EKTRG+F+K+ I+KMK
Sbjct:   190 KELLYYDYQPLRPEVEKEIGARRVDSLEEMVSQCDVVTINCPLHEKTRGLFNKELISKMK 249

Query:   120 KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN-----QAM 174
              G  +VN ARGAI+  + V +A  SGH+ GY GDVW PQPAPK+HP RY  +      A 
Sbjct:   250 PGSWLVNTARGAIVVKEDVAEALKSGHLRGYGGDVWFPQPAPKEHPLRYAEHPWGGGNAT 309

Query:   175 TPHVSGTTIDAQV 187
              PH+SGT+IDAQ+
Sbjct:   310 VPHMSGTSIDAQI 322

GO:0008863 "formate dehydrogenase (NAD+) activity" evidence=IEA;RCA

GO:0033609 "oxalate metabolic process" evidence=RCA

GO:0006083 "acetate metabolic process" evidence=IEP

GO:0005622 "intracellular" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0005576 "extracellular region" evidence=IDA

GO:0005829 "cytosol" evidence=IEA

GO:0042183 "formate catabolic process" evidence=IEA

UNIPROTKB|O13437 FDH1 "Formate dehydrogenase" [Candida boidinii (taxid:5477)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 98/192 (51%), Positives = 133/192 (69%)

Query:     1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
             M +L+LVRNF+P H Q+I+ +W VA +A  AYD+EGKT+ T+G GRIG  +L+RL PFN 
Sbjct:   129 MTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLLPFNP 188

Query:    61 N-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119
               LLY+D   +  + E++ GA+  E+++ ++ + DIV VN PL   T+G+ +K+ ++K K
Sbjct:   189 KELLYYDYQALPKEAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFK 248

Query:   120 KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ-----AM 174
             KG  +VN ARGAI   + V  A  SG + GY GDVW PQPAPKDHPWR M N+     AM
Sbjct:   249 KGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAM 308

Query:   175 TPHVSGTTIDAQ 186
             TPH SGTT+DAQ
Sbjct:   309 TPHYSGTTLDAQ 320

GO:0005829 "cytosol" evidence=ISS

GO:0006734 "NADH metabolic process" evidence=IMP

GO:0006735 "NADH regeneration" evidence=IDA

GO:0008863 "formate dehydrogenase (NAD+) activity" evidence=IMP;IDA

GO:0015946 "methanol oxidation" evidence=IMP

GO:0030416 "methylamine metabolic process" evidence=IMP

GO:0042183 "formate catabolic process" evidence=IDA

GO:0042426 "choline catabolic process" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0070403 "NAD+ binding" evidence=IDA

CGD|CAL0000982 FDH1 [Candida albicans (taxid:5476)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 102/206 (49%), Positives = 130/206 (63%)

Query:     1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
             M +LIL+RN+  GH Q   G W+VA VA   +DLE K + TVG GRIG  +L+RL  FN 
Sbjct:   131 MTMLILIRNYGEGHAQATKGTWDVAAVAKDEFDLEDKVIATVGAGRIGYRILERLVAFNP 190

Query:    61 N-LLYHDRVKMDPQ-LEKETGAK--FE---------EDLDTMLPKCDIVVVNTPLTEKTR 107
               LLY+D   +  + + K   A   F          E L+ ++ + D+V +N PL EK+R
Sbjct:   191 KKLLYYDYQPLPEEAINKLNAASKLFNGVDNIVERVEKLEDLVSQADVVTINCPLYEKSR 250

Query:   108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWR 167
             G+F+KD I+KMKKG  +VN ARGAI+D +AV DA +SGHIA Y GDVW  QPAPKD PWR
Sbjct:   251 GLFNKDLISKMKKGSYLVNTARGAIVDPEAVADAVNSGHIA-YGGDVWPVQPAPKDMPWR 309

Query:   168 YMPN-------QAMTPHVSGTTIDAQ 186
              M N        AMT HVSGT++DAQ
Sbjct:   310 TMHNPYGEAYGNAMTLHVSGTSLDAQ 335

GO:0008863 "formate dehydrogenase (NAD+) activity" evidence=ISS

GO:0015942 "formate metabolic process" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0006546 "glycine catabolic process" evidence=NAS

GO:0042183 "formate catabolic process" evidence=IEA

UNIPROTKB|Q59QN6 FDH1 "Potential NAD-formate dehydrogenase" [Candida albicans SC5314 (taxid:237561)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 102/206 (49%), Positives = 130/206 (63%)

Query:     1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
             M +LIL+RN+  GH Q   G W+VA VA   +DLE K + TVG GRIG  +L+RL  FN 
Sbjct:   131 MTMLILIRNYGEGHAQATKGTWDVAAVAKDEFDLEDKVIATVGAGRIGYRILERLVAFNP 190

Query:    61 N-LLYHDRVKMDPQ-LEKETGAK--FE---------EDLDTMLPKCDIVVVNTPLTEKTR 107
               LLY+D   +  + + K   A   F          E L+ ++ + D+V +N PL EK+R
Sbjct:   191 KKLLYYDYQPLPEEAINKLNAASKLFNGVDNIVERVEKLEDLVSQADVVTINCPLYEKSR 250

Query:   108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWR 167
             G+F+KD I+KMKKG  +VN ARGAI+D +AV DA +SGHIA Y GDVW  QPAPKD PWR
Sbjct:   251 GLFNKDLISKMKKGSYLVNTARGAIVDPEAVADAVNSGHIA-YGGDVWPVQPAPKDMPWR 309

Query:   168 YMPN-------QAMTPHVSGTTIDAQ 186
              M N        AMT HVSGT++DAQ
Sbjct:   310 TMHNPYGEAYGNAMTLHVSGTSLDAQ 335

GO:0005829 "cytosol" evidence=ISS

GO:0006546 "glycine catabolic process" evidence=NAS

GO:0008863 "formate dehydrogenase (NAD+) activity" evidence=ISS

GO:0015942 "formate metabolic process" evidence=ISS

SGD|S000005915 FDH1 "NAD(+)-dependent formate dehydrogenase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 95/202 (47%), Positives = 129/202 (63%)

Query:     3 ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN- 61
             IL+L+RN+  GH Q I+GEW++AGVA   YDLE K + TVG GRIG  +L+RL  FN   
Sbjct:   133 ILVLIRNYNGGHQQAINGEWDIAGVAKNEYDLEDKIISTVGAGRIGYRVLERLVAFNPKK 192

Query:    62 LLYHDRVKMDPQ-LEK--ETGAKFE---------EDLDTMLPKCDIVVVNTPLTEKTRGM 109
             LLY+D  ++  + + +  E    F          E L+ M+ + D+V +N PL + +RG+
Sbjct:   193 LLYYDYQELPAEAINRLNEASKLFNGRGDIVQRVEKLEDMVAQSDVVTINCPLHKDSRGL 252

Query:   110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYM 169
             F+K  I+ MK G  +VN ARGAI   + V +A  SG +AGY GDVW+ QPAPKDHPWR M
Sbjct:   253 FNKKLISHMKDGAYLVNTARGAICVAEDVAEAVKSGKLAGYGGDVWDKQPAPKDHPWRTM 312

Query:   170 PNQ-----AMTPHVSGTTIDAQ 186
              N+     AMT H+SGT++DAQ
Sbjct:   313 DNKDHVGNAMTVHISGTSLDAQ 334

GO:0008863 "formate dehydrogenase (NAD+) activity" evidence=IEA;IGI;ISS;IDA

GO:0042183 "formate catabolic process" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

CGD|CAL0001883 orf19.1117 [Candida albicans (taxid:5476)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 96/206 (46%), Positives = 128/206 (62%)

Query:     1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
             M +LIL+RN+  GH Q   G W++A VA   +D+E K   T+G GRIG  +L+RL  FN 
Sbjct:   131 MTMLILLRNYGEGHAQATQGTWDIAAVAKDEFDMEDKVFATIGAGRIGYRILERLIAFNP 190

Query:    61 N-LLYHDRVKMDPQ-LEKETGAK--FE---------EDLDTMLPKCDIVVVNTPLTEKTR 107
               LLY+D   +  + + K   A   F          E L+ ++ + D+V +N PL EK++
Sbjct:   191 KKLLYYDYQPLPEEAINKLNAASKLFNGVDNIIERVESLEDLVSQADVVTLNCPLYEKSK 250

Query:   108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWR 167
             GMF+K+ I+KMKKG  ++N ARGA+ D QA+ DA +SGHIA Y GDVW  QPAPKD PWR
Sbjct:   251 GMFNKELISKMKKGSYVINTARGALTDPQAIADAVNSGHIA-YGGDVWPVQPAPKDMPWR 309

Query:   168 YMPN-------QAMTPHVSGTTIDAQ 186
              M N        AMT HVSGT++DAQ
Sbjct:   310 TMHNPYGKDYGNAMTVHVSGTSLDAQ 335

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q59N71 FDH98 "Potential NAD-formate dehydrogenase" [Candida albicans SC5314 (taxid:237561)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 96/206 (46%), Positives = 128/206 (62%)

Query:     1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
             M +LIL+RN+  GH Q   G W++A VA   +D+E K   T+G GRIG  +L+RL  FN 
Sbjct:   131 MTMLILLRNYGEGHAQATQGTWDIAAVAKDEFDMEDKVFATIGAGRIGYRILERLIAFNP 190

Query:    61 N-LLYHDRVKMDPQ-LEKETGAK--FE---------EDLDTMLPKCDIVVVNTPLTEKTR 107
               LLY+D   +  + + K   A   F          E L+ ++ + D+V +N PL EK++
Sbjct:   191 KKLLYYDYQPLPEEAINKLNAASKLFNGVDNIIERVESLEDLVSQADVVTLNCPLYEKSK 250

Query:   108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWR 167
             GMF+K+ I+KMKKG  ++N ARGA+ D QA+ DA +SGHIA Y GDVW  QPAPKD PWR
Sbjct:   251 GMFNKELISKMKKGSYVINTARGALTDPQAIADAVNSGHIA-YGGDVWPVQPAPKDMPWR 309

Query:   168 YMPN-------QAMTPHVSGTTIDAQ 186
              M N        AMT HVSGT++DAQ
Sbjct:   310 TMHNPYGKDYGNAMTVHVSGTSLDAQ 335

GO:0005575 "cellular_component" evidence=ND

SGD|S000005218 GOR1 "Glyoxylate reductase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 71/161 (44%), Positives = 99/161 (61%)

Query:     3 ILILVRNFLPGHHQVISGEWNVAGVAYRA---YDLEGKTVGTVGCGRIGKLLLQRLKPFN 59
             +L  +RNF  G+ ++I G W  AG A  +   YD EGKTVG +G GRIG+ +L+RLKPF 
Sbjct:   127 LLGALRNFGIGNRRLIEGNWPEAGPACGSPFGYDPEGKTVGILGLGRIGRCILERLKPFG 186

Query:    60 C-NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKM 118
               N +YH+R ++ P  E+E G ++    +  L + DIV VN PL   T  + + + I KM
Sbjct:   187 FENFIYHNRHQL-PS-EEEHGCEYV-GFEEFLKRSDIVSVNVPLNHNTHHLINAETIEKM 243

Query:   119 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP 159
             K GV+IVN ARGA++D QA+ DA  SG I     DV+  +P
Sbjct:   244 KDGVVIVNTARGAVIDEQAMTDALRSGKIRSAGLDVFEYEP 284

GO:0047964 "glyoxylate reductase activity" evidence=IEA;IMP

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0009436 "glyoxylate catabolic process" evidence=IMP

GO:0048037 "cofactor binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0051287 "NAD binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

CGD|CAL0006135 GOR1 [Candida albicans (taxid:5476)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 67/190 (35%), Positives = 110/190 (57%)

Query:     3 ILILVRNFLPGHHQVISGEW------NVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLK 56
             +L  +RNFL G   +++GEW        AG A   +  +GK VG +G G IG+ +  RLK
Sbjct:   126 VLACMRNFLQGRQILMNGEWPSNGDKEAAG-APLGHTPQGKVVGILGMGGIGRAIRDRLK 184

Query:    57 PFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI 115
             PF  + ++Y++R ++ P+LEK  GA++   +D +  + D++++  PL  KTR + DK+ I
Sbjct:   185 PFGFDGIVYYNRKQLSPELEK--GAEYVT-MDELFKQSDVIIIGVPLNAKTRHLIDKEAI 241

Query:   116 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMT 175
              KMK GV++VN ARGAI+D + + +   SG I  +  DV+  +P         +PN    
Sbjct:   242 QKMKDGVVLVNIARGAIIDEKHLPELIKSGKIGAFGADVFEHEPEVSAELVN-LPNVVAL 300

Query:   176 PHVSGTTIDA 185
             PH+   +++A
Sbjct:   301 PHMGTHSVEA 310

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0047964 "glyoxylate reductase activity" evidence=IEA

GO:0009436 "glyoxylate catabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9S7E4	FDH_ARATH	1, ., 2, ., 1, ., 2	0.8181	0.7791	0.4869	yes	no
Q9SXP2	FDH1_ORYSJ	1, ., 2, ., 1, ., 2	0.8502	0.7791	0.4973	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.2.1.2	0.914
3rd Layer	1.2.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	240
PLN03139	386	PLN03139, PLN03139, formate dehydrogenase; Provisi	1e-154
cd05302	348	cd05302, FDH, NAD-dependent Formate Dehydrogenase	1e-126
PRK07574	385	PRK07574, PRK07574, formate dehydrogenase; Provisi	1e-99
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	3e-68
COG1052	324	COG1052, LdhA, Lactate dehydrogenase and related d	4e-68
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	4e-67
COG0111	324	COG0111, SerA, Phosphoglycerate dehydrogenase and	2e-62
cd12173	304	cd12173, PGDH_4, Phosphoglycerate dehydrogenases,	8e-60
cd12168	321	cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l	9e-58
cd12175	311	cd12175, 2-Hacid_dh_11, Putative D-isomer specific	2e-55
cd12172	306	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat	4e-55
cd05301	309	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr	7e-55
cd12171	310	cd12171, 2-Hacid_dh_10, Putative D-isomer specific	3e-52
cd12154	310	cd12154, FDH_GDH_like, Formate/glycerate dehydroge	4e-51
cd05299	312	cd05299, CtBP_dh, C-terminal binding protein (CtBP	1e-47
PRK13581	526	PRK13581, PRK13581, D-3-phosphoglycerate dehydroge	2e-47
cd12177	321	cd12177, 2-Hacid_dh_12, Putative D-isomer specific	2e-44
PRK13243	333	PRK13243, PRK13243, glyoxylate reductase; Reviewed	4e-43
cd12159	303	cd12159, 2-Hacid_dh_2, Putative D-isomer specific	2e-42
cd12161	315	cd12161, GDH_like_1, Putative glycerate dehydrogen	3e-42
cd12178	317	cd12178, 2-Hacid_dh_13, Putative D-isomer specific	4e-42
cd12165	314	cd12165, 2-Hacid_dh_6, Putative D-isomer specific	9e-42
TIGR01327	525	TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas	1e-41
cd05303	301	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P	3e-41
cd12167	330	cd12167, 2-Hacid_dh_8, Putative D-isomer specific	3e-41
cd12157	318	cd12157, PTDH, Thermostable Phosphite Dehydrogenas	2e-40
cd12162	307	cd12162, 2-Hacid_dh_4, Putative D-isomer specific	6e-40
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	1e-38
cd12185	322	cd12185, HGDH_LDH_like, Putative Lactate dehydroge	3e-38
cd12155	314	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2	1e-37
cd12183	328	cd12183, LDH_like_2, D-Lactate and related Dehydro	1e-36
cd12166	300	cd12166, 2-Hacid_dh_7, Putative D-isomer specific	1e-36
cd12174	305	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat	4e-36
cd12176	304	cd12176, PGDH_3, Phosphoglycerate dehydrogenases,	3e-35
cd12186	329	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr	1e-34
cd12179	306	cd12179, 2-Hacid_dh_14, Putative D-isomer specific	9e-33
cd12187	329	cd12187, LDH_like_1, D-Lactate and related Dehydro	2e-32
cd12158	343	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh	1e-31
cd12169	308	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat	2e-31
cd01619	323	cd01619, LDH_like, D-Lactate and related Dehydroge	2e-31
cd12180	308	cd12180, 2-Hacid_dh_15, Putative D-isomer specific	8e-31
PRK15409	323	PRK15409, PRK15409, bifunctional glyoxylate/hydrox	3e-30
cd12164	306	cd12164, GDH_like_2, Putative glycerate dehydrogen	8e-30
cd12156	301	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase,	8e-29
PLN02928	347	PLN02928, PLN02928, oxidoreductase family protein	4e-27
cd12184	330	cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro	4e-26
cd12163	334	cd12163, 2-Hacid_dh_5, Putative D-isomer specific	5e-26
pfam00389	312	pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy	6e-26
PRK06487	317	PRK06487, PRK06487, glycerate dehydrogenase; Provi	6e-26
PRK11790	409	PRK11790, PRK11790, D-3-phosphoglycerate dehydroge	2e-24
PRK08410	311	PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P	3e-24
PRK06932	314	PRK06932, PRK06932, glycerate dehydrogenase; Provi	2e-22
PRK00257	381	PRK00257, PRK00257, erythronate-4-phosphate dehydr	2e-19
cd12160	310	cd12160, 2-Hacid_dh_3, Putative D-isomer specific	1e-17
PRK06436	303	PRK06436, PRK06436, glycerate dehydrogenase; Provi	2e-15
PRK15469	312	PRK15469, ghrA, bifunctional glyoxylate/hydroxypyr	6e-14
PRK15438	378	PRK15438, PRK15438, erythronate-4-phosphate dehydr	1e-12
PLN02306	386	PLN02306, PLN02306, hydroxypyruvate reductase	2e-12
PRK08605	332	PRK08605, PRK08605, D-lactate dehydrogenase; Valid	2e-12
PRK12480	330	PRK12480, PRK12480, D-lactate dehydrogenase; Provi	2e-11
cd12170	294	cd12170, 2-Hacid_dh_9, Putative D-isomer specific	6e-07
COG1712	255	COG1712, COG1712, Predicted dinucleotide-utilizing	6e-04
PRK13304	265	PRK13304, PRK13304, L-aspartate dehydrogenase; Rev	0.001

>gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional

 Score =  432 bits (1112), Expect = e-154
 Identities = 167/186 (89%), Positives = 179/186 (96%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILIL+RNFLPG+HQV+SGEWNVAG+AYRAYDLEGKTVGTVG GRIG+LLLQRLKPFNC
Sbjct: 164 MRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNC 223

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR+KMDP+LEKETGAKFEEDLD MLPKCD+VV+NTPLTEKTRGMF+K+RIAKMKK
Sbjct: 224 NLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKK 283

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIMDTQAV DACSSGHI GY GDVW PQPAPKDHPWRYMPN AMTPH+SG
Sbjct: 284 GVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISG 343

Query: 181 TTIDAQ 186
           TTIDAQ
Sbjct: 344 TTIDAQ 349

Length = 386

>gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH)

 Score =  360 bits (925), Expect = e-126
 Identities = 117/187 (62%), Positives = 145/187 (77%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M ILILVRN++PGH Q I G WNVA V  RAYDLEGKTVGTVG GRIG  +L+RLKPF+ 
Sbjct: 127 MMILILVRNYVPGHEQAIEGGWNVADVVKRAYDLEGKTVGTVGAGRIGLRVLRRLKPFDV 186

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           +LLY+DR ++  ++EKE G     DL+ M+ KCD+V +N PL  +T G+F+K+ ++KMKK
Sbjct: 187 HLLYYDRHRLPEEVEKELGLTRHADLEDMVSKCDVVTINCPLHPETEGLFNKELLSKMKK 246

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           G  +VN ARG I D +AV +A  SGH+AGY+GDVW PQPAPKDHPWR MPN AMTPH+SG
Sbjct: 247 GAYLVNTARGKICDREAVAEALESGHLAGYAGDVWFPQPAPKDHPWRTMPNNAMTPHISG 306

Query: 181 TTIDAQV 187
           TT+DAQ 
Sbjct: 307 TTLDAQA 313

NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348

>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional

 Score =  294 bits (755), Expect = 1e-99
 Identities = 98/186 (52%), Positives = 129/186 (69%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M IL LVRN+ P H Q + G WN+A    R+YDLEG TVG VG GRIG  +L+RLKPF+ 
Sbjct: 157 MMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDV 216

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
            L Y DR ++  ++E+E G  +    D+++  CD+V ++ PL  +T  +FD D +++MK+
Sbjct: 217 KLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKR 276

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           G  +VN ARG I+D  AVV A  SGH+AGY+GDVW PQPAP DHPWR MP   MTPH+SG
Sbjct: 277 GSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISG 336

Query: 181 TTIDAQ 186
           TT+ AQ
Sbjct: 337 TTLSAQ 342

Length = 385

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score =  211 bits (540), Expect = 3e-68
 Identities = 74/186 (39%), Positives = 115/186 (61%), Gaps = 3/186 (1%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
             +L L+R        V  G W      +  Y+LEGKTVG VG GRIG+ + +RL+ F  
Sbjct: 106 GLLLALLRRLPRADAAVRRG-WGWLWAGFPGYELEGKTVGIVGLGRIGQRVAKRLQAFGM 164

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
            +LY+DR +  P+ E++ G +    LD +L + D+VV++ PLT +TR + +++ +A MK 
Sbjct: 165 KVLYYDRTRK-PEPEEDLGFRVV-SLDELLAQSDVVVLHLPLTPETRHLINEEELALMKP 222

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           G ++VN ARG ++D  A++ A  SG IAG + DV+ P+P P DHP   +PN  +TPH++G
Sbjct: 223 GAVLVNTARGGLVDEDALLRALKSGKIAGAALDVFEPEPLPADHPLLELPNVILTPHIAG 282

Query: 181 TTIDAQ 186
            T +A+
Sbjct: 283 YTEEAR 288

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

 Score =  212 bits (541), Expect = 4e-68
 Identities = 78/189 (41%), Positives = 118/189 (62%), Gaps = 7/189 (3%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYR--AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           IL L R    G  +V  G W+++G       +DL GKT+G +G GRIG+ + +RLK F  
Sbjct: 111 ILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGM 170

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
            +LY+DR   +P+ EKE GA++  DLD +L + DI+ ++ PLT +TR + + + +AKMK 
Sbjct: 171 KVLYYDRSP-NPEAEKELGARYV-DLDELLAESDIISLHCPLTPETRHLINAEELAKMKP 228

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ---AMTPH 177
           G ++VN ARG ++D QA++DA  SG IAG   DV+  +PA  DHP   + N     +TPH
Sbjct: 229 GAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPH 288

Query: 178 VSGTTIDAQ 186
           ++  T +A+
Sbjct: 289 IASATEEAR 297

Length = 324

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score =  204 bits (522), Expect = 4e-67
 Identities = 67/177 (37%), Positives = 104/177 (58%), Gaps = 5/177 (2%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L L R       QV +G W     A    +L GKTVG +G GRIG+ + +RLK F   +
Sbjct: 4   LLALARRIPEADRQVRAGRWR--PDALLGRELSGKTVGIIGLGRIGRAVARRLKAFGMKV 61

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           + +DR        +  GA++   LD +L + D+V ++ PLT +TR + + +R+A MK G 
Sbjct: 62  IAYDRYPKAE--AEALGARYV-SLDELLAESDVVSLHLPLTPETRHLINAERLALMKPGA 118

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVS 179
           +++N ARG ++D  A++ A  SG IAG + DV+ P+P P DHP   +PN  +TPH++
Sbjct: 119 ILINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPLPPDHPLLELPNVILTPHIA 175

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

 Score =  197 bits (504), Expect = 2e-62
 Identities = 68/184 (36%), Positives = 106/184 (57%), Gaps = 3/184 (1%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L L R           GEW+    A+R  +L GKTVG +G GRIG+ + +RLK F   +
Sbjct: 111 LLALARRIPDADASQRRGEWD--RKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKV 168

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           + +D      +     G    + LD +L + DI+ ++ PLT +TRG+ + + +AKMK G 
Sbjct: 169 IGYDPYSP-RERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGA 227

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           +++N ARG ++D  A++ A  SG IAG + DV+  +P P D P   +PN  +TPH+ G+T
Sbjct: 228 ILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGST 287

Query: 183 IDAQ 186
            +AQ
Sbjct: 288 DEAQ 291

Length = 324

>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  190 bits (485), Expect = 8e-60
 Identities = 67/187 (35%), Positives = 107/187 (57%), Gaps = 4/187 (2%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L L RN       + +G+W+     +   +L GKT+G VG GRIG+ + +R + F   +
Sbjct: 107 MLALARNIPQADASLRAGKWDRK--KFMGVELRGKTLGIVGLGRIGREVARRARAFGMKV 164

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           L +D   +  +     G +    LD +L + D + ++TPLT +TRG+ + + +AKMK G 
Sbjct: 165 LAYDPY-ISAERAAAGGVELV-SLDELLAEADFISLHTPLTPETRGLINAEELAKMKPGA 222

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           +++N ARG I+D  A+ DA  SG IAG + DV+  +P P D P   +PN  +TPH+  +T
Sbjct: 223 ILINTARGGIVDEAALADALKSGKIAGAALDVFEQEPPPADSPLLGLPNVILTPHLGAST 282

Query: 183 IDAQVIV 189
            +AQ  V
Sbjct: 283 EEAQERV 289

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases

 Score =  185 bits (473), Expect = 9e-58
 Identities = 71/187 (37%), Positives = 104/187 (55%), Gaps = 8/187 (4%)

Query: 4   LIL--VRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN 61
           LIL  +RNF        +G+W        A+D  GKT+G +G G IGK + ++   F   
Sbjct: 120 LILGALRNFSRAERSARAGKWRGFLDLTLAHDPRGKTLGILGLGGIGKAIARKAAAFGMK 179

Query: 62  LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
           ++YH+R ++  +LEK   A +   LD +L + D+V +N PLT  TR + +K   AKMK G
Sbjct: 180 IIYHNRSRLPEELEKAL-ATYYVSLDELLAQSDVVSLNCPLTAATRHLINKKEFAKMKDG 238

Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN--PQPAPKDHPWRYMPNQAMTPHVS 179
           V+IVN ARGA++D  A+VDA  SG +A    DV+   P+  P       MPN  + PH+ 
Sbjct: 239 VIIVNTARGAVIDEDALVDALESGKVASAGLDVFENEPEVNPG---LLKMPNVTLLPHMG 295

Query: 180 GTTIDAQ 186
             T++ Q
Sbjct: 296 TLTVETQ 302

D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321

>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  179 bits (456), Expect = 2e-55
 Identities = 65/186 (34%), Positives = 109/186 (58%), Gaps = 2/186 (1%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M +L L+R       ++ +G W        + +L GKTVG VG G IG+ + +RL+ F  
Sbjct: 108 MLMLALLRRLPEADRELRAGRWG-RPEGRPSRELSGKTVGIVGLGNIGRAVARRLRGFGV 166

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
            ++Y+DR +     EK+ G ++ E LD +L + D+V ++ PLT +TR +   + +A MK 
Sbjct: 167 EVIYYDRFRDPEAEEKDLGVRYVE-LDELLAESDVVSLHVPLTPETRHLIGAEELAAMKP 225

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           G +++N ARG ++D +A++ A  SGH+AG   DV+  +P P D P   + N  +TPH++G
Sbjct: 226 GAILINTARGGLVDEEALLAALRSGHLAGAGLDVFWQEPLPPDDPLLRLDNVILTPHIAG 285

Query: 181 TTIDAQ 186
            T ++ 
Sbjct: 286 VTDESY 291

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311

>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  178 bits (454), Expect = 4e-55
 Identities = 64/183 (34%), Positives = 103/183 (56%), Gaps = 6/183 (3%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L L R       +V +G W+         +L GKT+G +G GRIGK + +RL  F   +
Sbjct: 113 MLALARQIPQADREVRAGGWDRPV----GTELYGKTLGIIGLGRIGKAVARRLSGFGMKV 168

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           L +D    D +  KE G +F   L+ +L + D + ++ PLT +TR + +   +A MK G 
Sbjct: 169 LAYDPYP-DEEFAKEHGVEFV-SLEELLKESDFISLHLPLTPETRHLINAAELALMKPGA 226

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           +++N ARG ++D +A+ +A  SG IAG + DV+  +P P D P   +PN  +TPH+  +T
Sbjct: 227 ILINTARGGLVDEEALYEALKSGRIAGAALDVFEEEPPPADSPLLELPNVILTPHIGAST 286

Query: 183 IDA 185
            +A
Sbjct: 287 KEA 289

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306

>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)

 Score =  177 bits (453), Expect = 7e-55
 Identities = 73/182 (40%), Positives = 109/182 (59%), Gaps = 6/182 (3%)

Query: 4   LIL--VRNFLPGHHQVISGEW-NVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           L+L   R  + G   V +GEW   +       DL GKT+G VG GRIG+ + +R K F  
Sbjct: 109 LLLAAARRVVEGDRFVRAGEWKGWSPTLLLGTDLHGKTLGIVGMGRIGQAVARRAKGFGM 168

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
            +LYH+R +  P+ E+E GA++   LD +L + D V ++ PLT +TR + + +R+A MK 
Sbjct: 169 KILYHNRSRK-PEAEEELGARYV-SLDELLAESDFVSLHCPLTPETRHLINAERLALMKP 226

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHV-S 179
             +++N ARG ++D  A+V+A  SG IAG   DV+ P+P P DHP   +PN  + PH+ S
Sbjct: 227 TAILINTARGGVVDEDALVEALKSGKIAGAGLDVFEPEPLPADHPLLTLPNVVLLPHIGS 286

Query: 180 GT 181
            T
Sbjct: 287 AT 288

D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309

>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  171 bits (435), Expect = 3e-52
 Identities = 66/185 (35%), Positives = 98/185 (52%), Gaps = 4/185 (2%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAY--DLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           +L   RN    H  +  GEW      Y  Y  +L GKTVG VG G IG+ + +RLK F  
Sbjct: 112 MLAETRNIARAHAALKDGEWRKDYYNYDGYGPELRGKTVGIVGFGAIGRRVAKRLKAFGA 171

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
            +L +D   +DP+  +  G K    L+ +L + D+V ++  LT +TRGM   +  A MK 
Sbjct: 172 EVLVYDPY-VDPEKIEADGVKKV-SLEELLKRSDVVSLHARLTPETRGMIGAEEFALMKP 229

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
               +N AR  ++D  A+++A   G I G + DV+  +P P DHP   + N  +TPH++G
Sbjct: 230 TAYFINTARAGLVDEDALIEALEEGKIGGAALDVFPEEPLPADHPLLKLDNVTLTPHIAG 289

Query: 181 TTIDA 185
            T D 
Sbjct: 290 ATRDV 294

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases

 Score =  168 bits (426), Expect = 4e-51
 Identities = 51/176 (28%), Positives = 72/176 (40%), Gaps = 16/176 (9%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
             I   +    PG                 A D+ GKTV  VG G +GK   Q L+    
Sbjct: 138 QFIARFLEVQQPGR-------------LGGAPDVAGKTVVVVGAGVVGKEAAQMLRGLGA 184

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF-DKDRIAKMK 119
            +L  D      +  +E G K  E+L+  L + D++V  T L  K  G+   ++ + +MK
Sbjct: 185 QVLITDINVEALEQLEELGGKNVEELEEALAEADVIVTTTLLPGKRAGILVPEELVEQMK 244

Query: 120 KGVLIVNNARGAIMDTQAVV-DACSSGHIAGYSGDVWNPQPAP-KDHPWRYMPNQA 173
            G +IVN A GA+   QA+       GH   + GDV  P P      PW      A
Sbjct: 245 PGSVIVNVAVGAVGCVQALHTQLLEEGHGVVHYGDVNMPGPGCAMGVPWDATLRLA 300

The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310

>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

 Score =  159 bits (404), Expect = 1e-47
 Identities = 64/179 (35%), Positives = 92/179 (51%), Gaps = 7/179 (3%)

Query: 3   ILILVRNFLPGHHQVISGEWN--VAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           IL L R        V +G W+  V G   R   L G T+G VG GRIG+ + +R K F  
Sbjct: 110 ILALARKLPFLDRAVRAGGWDWTVGGPIRR---LRGLTLGLVGFGRIGRAVAKRAKAFGF 166

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
            ++ +D       +    G +    LD +L + D+V ++ PLT +TR + D + +A MK 
Sbjct: 167 RVIAYDPYV-PDGVAALGGVRVV-SLDELLARSDVVSLHCPLTPETRHLIDAEALALMKP 224

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVS 179
           G  +VN ARG ++D  A+  A  SG IAG + DV   +P P D P    PN  +TPH +
Sbjct: 225 GAFLVNTARGGLVDEAALARALKSGRIAGAALDVLEEEPPPADSPLLSAPNVILTPHAA 283

The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312

>gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  163 bits (416), Expect = 2e-47
 Identities = 68/194 (35%), Positives = 106/194 (54%), Gaps = 19/194 (9%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L L RN    H  + +G+W      +   +L GKT+G +G GRIG  + +R K F   +
Sbjct: 109 MLALARNIPQAHASLKAGKWERK--KFMGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKV 166

Query: 63  L-YHDRVKMDPQLEKETGAKFEE------DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI 115
           + Y      DP +   +  +  +       LD +L + D + ++TPLT +TRG+   + +
Sbjct: 167 IAY------DPYI---SPERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIGAEEL 217

Query: 116 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMT 175
           AKMK GV I+N ARG I+D  A+ +A  SG +AG + DV+  +P P D P   +PN  +T
Sbjct: 218 AKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEP-PTDSPLFELPNVVVT 276

Query: 176 PHVSGTTIDAQVIV 189
           PH+  +T +AQ  V
Sbjct: 277 PHLGASTAEAQENV 290

Length = 526

>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  151 bits (383), Expect = 2e-44
 Identities = 66/183 (36%), Positives = 102/183 (55%), Gaps = 4/183 (2%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKP-FN 59
             IL ++R        V  G+W      +  ++L GKTVG +G G IG  + + LK  FN
Sbjct: 113 ALILTVLRKINQASEAVKEGKWTER-ANFVGHELSGKTVGIIGYGNIGSRVAEILKEGFN 171

Query: 60  CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119
             +L +D      ++ K+ GAK    L+ +L + DI+ ++ PLTE+T  M ++   +KMK
Sbjct: 172 AKVLAYDPYV-SEEVIKKKGAKPV-SLEELLAESDIISLHAPLTEETYHMINEKAFSKMK 229

Query: 120 KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVS 179
           KGV++VN ARG ++D +A+++A  SG IAG   DV   +P   DHP  +  N  +TPH+ 
Sbjct: 230 KGVILVNTARGELIDEEALIEALKSGKIAGAGLDVLEEEPIKADHPLLHYENVVITPHIG 289

Query: 180 GTT 182
             T
Sbjct: 290 AYT 292

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321

>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed

 Score =  148 bits (374), Expect = 4e-43
 Identities = 68/189 (35%), Positives = 108/189 (57%), Gaps = 8/189 (4%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYR-----AYDLEGKTVGTVGCGRIGKLLLQRLKP 57
           +L   R  +   H V SGEW   GVA+       YD+ GKT+G +G GRIG+ + +R K 
Sbjct: 112 LLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKG 171

Query: 58  FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAK 117
           F   +LY+ R +  P+ EKE GA++   L+ +L + D V ++ PLT++T  M +++R+  
Sbjct: 172 FGMRILYYSRTR-KPEAEKELGAEYR-PLEELLRESDFVSLHVPLTKETYHMINEERLKL 229

Query: 118 MKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPH 177
           MK   ++VN ARG ++DT+A+V A   G IAG   DV+  +P   +     + N  + PH
Sbjct: 230 MKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYY-NEELFSLKNVVLAPH 288

Query: 178 VSGTTIDAQ 186
           +   T +A+
Sbjct: 289 IGSATFEAR 297

Length = 333

>gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  145 bits (368), Expect = 2e-42
 Identities = 64/168 (38%), Positives = 89/168 (52%), Gaps = 4/168 (2%)

Query: 16  QVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE 75
           +  +  W+ A        L G TV  VG G IG+ L+  L PF   ++  +R     +  
Sbjct: 105 RARATTWDPAEEDDLVTLLRGSTVAIVGAGGIGRALIPLLAPFGAKVIAVNRSGRPVEGA 164

Query: 76  KETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDT 135
            ET     + LD + P  D VV+  PLT +TR + D   +A MK    +VN ARG ++DT
Sbjct: 165 DETVPA--DRLDEVWPDADHVVLAAPLTPETRHLVDAAALAAMKPHAWLVNVARGPLVDT 222

Query: 136 QAVVDACSSGHIAGYSGDVWNPQPAPKDHP-WRYMPNQAMTPHVSGTT 182
            A+VDA  SG IAG + DV +P+P P  HP W  +PN  +TPHV+ T 
Sbjct: 223 DALVDALRSGEIAGAALDVTDPEPLPDGHPLWS-LPNALITPHVANTP 269

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303

>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  145 bits (368), Expect = 3e-42
 Identities = 64/174 (36%), Positives = 102/174 (58%), Gaps = 7/174 (4%)

Query: 6   LVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH 65
           L+RN +P    V +G    AG      +L GKTVG VG G IG  + +  K F C +L +
Sbjct: 117 LLRNIVPCDAAVRAGG-TKAG--LIGRELAGKTVGIVGTGAIGLRVARLFKAFGCKVLAY 173

Query: 66  DRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV 125
            R +   +  K  G ++   LD +L + DIV ++ PL ++T+G+  K+++A MK+  +++
Sbjct: 174 SRSE--KEEAKALGIEYV-SLDELLAESDIVSLHLPLNDETKGLIGKEKLALMKESAILI 230

Query: 126 NNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA-PKDHPWRYMPNQAMTPHV 178
           N ARG ++D +A+ DA + G IAG   DV++ +P  P D+P  + PN  +TPHV
Sbjct: 231 NTARGPVVDNEALADALNEGKIAGAGIDVFDMEPPLPADYPLLHAPNTILTPHV 284

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315

>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  145 bits (367), Expect = 4e-42
 Identities = 62/188 (32%), Positives = 104/188 (55%), Gaps = 7/188 (3%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAY-RAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN 61
           IL L R    G   +  G +      +   ++L GKT+G +G GRIG+ + +R K F   
Sbjct: 110 ILALARRIAEGDRLMRRGGFLGWAPLFFLGHELAGKTLGIIGMGRIGQAVARRAKAFGMK 169

Query: 62  LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
           +LY++R ++  + EKE GA +  DLD +L + D V ++ P T +T  + D      MK  
Sbjct: 170 ILYYNRHRLSEETEKELGATYV-DLDELLKESDFVSLHAPYTPETHHLIDAAAFKLMKPT 228

Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW--NPQPAPKDHPWRYMPNQAMTPHVS 179
             ++N ARG ++D +A+VDA  +G IAG + DV+   P+ +P+    + + N  +TPH+ 
Sbjct: 229 AYLINAARGPLVDEKALVDALKTGEIAGAALDVFEFEPEVSPE---LKKLDNVILTPHIG 285

Query: 180 GTTIDAQV 187
             T++A+ 
Sbjct: 286 NATVEARD 293

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317

>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  144 bits (365), Expect = 9e-42
 Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 9/191 (4%)

Query: 3   ILILVRNFLPGHHQVISGEWN-VAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN 61
           IL L +  +   + +  G W+  AG    + +L GKTVG +G G IG+ + + LK F   
Sbjct: 103 ILALAKRIVEYDNDLRRGIWHGRAGEEPESKELRGKTVGILGYGHIGREIARLLKAFGMR 162

Query: 62  LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
           ++   R   + +     G     DLD  L + D+VVV  PLT++TRG+     +A MK G
Sbjct: 163 VIGVSRSPKEDEGADFVG--TLSDLDEALEQADVVVVALPLTKQTRGLIGAAELAAMKPG 220

Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW------NPQPAPKDHPWRYMPNQAMT 175
            ++VN  RG ++D +A+ +A     IAG + DVW          AP  +P+  +PN  M+
Sbjct: 221 AILVNVGRGPVVDEEALYEALKERPIAGAAIDVWWRYPSRGDPVAPSRYPFHELPNVIMS 280

Query: 176 PHVSGTTIDAQ 186
           PH +G T +  
Sbjct: 281 PHNAGWTEETF 291

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase

 Score =  147 bits (374), Expect = 1e-41
 Identities = 71/193 (36%), Positives = 107/193 (55%), Gaps = 12/193 (6%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
             +L   RN       +  GEW+    A+   +L GKT+G +G GRIG ++ +R K F  
Sbjct: 105 AMLLAAARNIPQADASLKEGEWDRK--AFMGTELYGKTLGVIGLGRIGSIVAKRAKAFGM 162

Query: 61  NLLYHDRVKMDPQLEKET----GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA 116
            +L +D     P +  E     G +  +DLD +L + D + V+TPLT +TRG+   + +A
Sbjct: 163 KVLAYD-----PYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELA 217

Query: 117 KMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTP 176
           KMKKGV+IVN ARG I+D  A+ +A   GH+   + DV+  +P P D+P   + N   TP
Sbjct: 218 KMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEP-PTDNPLFDLDNVIATP 276

Query: 177 HVSGTTIDAQVIV 189
           H+  +T +AQ  V
Sbjct: 277 HLGASTREAQENV 289

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525

>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains

 Score =  142 bits (361), Expect = 3e-41
 Identities = 59/184 (32%), Positives = 103/184 (55%), Gaps = 5/184 (2%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L L R     + ++  G+WN     Y+  +L GKT+G +G GRIG+ + +  +    N+
Sbjct: 108 MLSLARFIHRANREMKLGKWNKK--KYKGIELRGKTLGIIGFGRIGREVAKIARALGMNV 165

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           + +D    D Q   E G K    L+ +L   D + ++ PLT +T+ M +K  +  MK G 
Sbjct: 166 IAYDPYPKDEQ-AVELGVKTV-SLEELLKNSDFISLHVPLTPETKHMINKKELELMKDGA 223

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           +I+N +RG ++D +A+++A  SG +AG + DV+  +P P       +PN ++TPH+  +T
Sbjct: 224 IIINTSRGGVIDEEALLEALKSGKLAGAALDVFENEP-PPGSKLLELPNVSLTPHIGAST 282

Query: 183 IDAQ 186
            +AQ
Sbjct: 283 KEAQ 286

Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301

>gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  143 bits (362), Expect = 3e-41
 Identities = 62/183 (33%), Positives = 96/183 (52%), Gaps = 3/183 (1%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           IL+ +R          +G             L G+TVG VG GRIG+ +++ L+PF   +
Sbjct: 117 ILLALRRIPRFAAAYRAGRDWGWPTRRGGRGLYGRTVGIVGFGRIGRAVVELLRPFGLRV 176

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           L +D   +        G +    LD +L + D+V ++ PLT +TRGM D   +A M+ G 
Sbjct: 177 LVYDPY-LPAAEAAALGVE-LVSLDELLARSDVVSLHAPLTPETRGMIDARLLALMRDGA 234

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
             +N ARGA++D  A++    SG +     DV +P+P P D P R +PN  +TPH++G+T
Sbjct: 235 TFINTARGALVDEAALLAELRSGRLRAAL-DVTDPEPLPPDSPLRTLPNVLLTPHIAGST 293

Query: 183 IDA 185
            D 
Sbjct: 294 GDE 296

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330

>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase

 Score =  140 bits (355), Expect = 2e-40
 Identities = 62/184 (33%), Positives = 95/184 (51%), Gaps = 9/184 (4%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           ++ L R+ L G   V SG++      +    L+GKTVG +G G +G+ + +RL  F   L
Sbjct: 111 LIGLGRHILAGDRFVRSGKFGGWRPKFYGTGLDGKTVGILGMGALGRAIARRLSGFGATL 170

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           LY+D   +D   E+    +  E LD +L   D +V+  PLT  T  + + + +AKMK G 
Sbjct: 171 LYYDPHPLDQAEEQALNLRRVE-LDELLESSDFLVLALPLTPDTLHLINAEALAKMKPGA 229

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDV-----WNPQPAPKDHPWRYM---PNQAM 174
           L+VN  RG+++D  AV +A  SGH+ GY+ DV     W     P+  P   +        
Sbjct: 230 LLVNPCRGSVVDEAAVAEALKSGHLGGYAADVFEMEDWARPDRPRSIPQELLDQHDRTVF 289

Query: 175 TPHV 178
           TPH+
Sbjct: 290 TPHI 293

Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318

>gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  139 bits (352), Expect = 6e-40
 Identities = 61/190 (32%), Positives = 106/190 (55%), Gaps = 13/190 (6%)

Query: 4   LIL-VRNFLPGHHQVI-SGEWNVAG----VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKP 57
           L+L +   +  H+ V+ +GEW  +       Y   +L GKT+G +G G IG+ + +  + 
Sbjct: 109 LLLALARLVAYHNDVVKAGEWQKSPDFCFWDYPIIELAGKTLGIIGYGNIGQAVARIARA 168

Query: 58  FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAK 117
           F   +L+ +R    P  E          LD +L + D++ ++ PLT +TR + + + +AK
Sbjct: 169 FGMKVLFAERKGAPPLREGYV------SLDELLAQSDVISLHCPLTPETRNLINAEELAK 222

Query: 118 MKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHP-WRYMPNQAMTP 176
           MK G +++N ARG ++D QA+ DA +SG IAG   DV + +P   D+P  +  PN  +TP
Sbjct: 223 MKPGAILINTARGGLVDEQALADALNSGKIAGAGLDVLSQEPPRADNPLLKAAPNLIITP 282

Query: 177 HVSGTTIDAQ 186
           H++  + +A+
Sbjct: 283 HIAWASREAR 292

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score =  136 bits (344), Expect = 1e-38
 Identities = 59/150 (39%), Positives = 90/150 (60%), Gaps = 3/150 (2%)

Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDR-VKMDPQLEKETGAKFEEDLDTMLPK 92
           L GKTV  VG G IG+ + +R K F   ++   R  +  P +  E      ++LD +LP+
Sbjct: 132 LAGKTVLIVGLGDIGREIARRAKAFGMRVIGVRRSGRPAPPVVDEVYT--PDELDELLPE 189

Query: 93  CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 152
            D VV   PLT +TRG+F+ +R A MK G +++N  RG+++D  A+++A  SG IAG + 
Sbjct: 190 ADYVVNALPLTPETRGLFNAERFAAMKPGAVLINVGRGSVVDEDALIEALESGRIAGAAL 249

Query: 153 DVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           DV+  +P P D P   +PN  +TPH+SG +
Sbjct: 250 DVFEEEPLPADSPLWDLPNVIITPHISGDS 279

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains

 Score =  135 bits (341), Expect = 3e-38
 Identities = 61/192 (31%), Positives = 103/192 (53%), Gaps = 23/192 (11%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M +L+ +R +     +    ++++ G+  +  +L   TVG +G GRIG+ +++ L  F C
Sbjct: 110 MLMLMALRKYKQIMKRAEVNDYSLGGL--QGRELRNLTVGVIGTGRIGQAVIKNLSGFGC 167

Query: 61  NLLYHDRVKMDPQLEKETGAKFEE--DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKM 118
            +L +D          E   K+ E  DLDT+  + DI+ ++TPLTE+T  + +K+ IAKM
Sbjct: 168 KILAYDP------YPNEEVKKYAEYVDLDTLYKESDIITLHTPLTEETYHLINKESIAKM 221

Query: 119 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW---------NPQPAPKDHPW--- 166
           K GV+I+N ARG ++DT+A+++   SG I G + DV          + +     +     
Sbjct: 222 KDGVIIINTARGELIDTEALIEGLESGKIGGAALDVIEGEDGIYYNDRKGDILSNRELAI 281

Query: 167 -RYMPNQAMTPH 177
            R  PN  +TPH
Sbjct: 282 LRSFPNVILTPH 293

This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322

>gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family

 Score =  133 bits (337), Expect = 1e-37
 Identities = 63/195 (32%), Positives = 94/195 (48%), Gaps = 34/195 (17%)

Query: 32  YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL----------YHDRVKMDPQLEKETGAK 81
            +L GKT+  +G G IG+ + +RLK F   ++          Y D+              
Sbjct: 131 LELYGKTILFLGTGSIGQEIAKRLKAFGMKVIGVNTSGRDVEYFDKCYPL---------- 180

Query: 82  FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDA 141
             E+LD +L + DIVV   PLTE+T  +FD+    +MKKG L +N  RG  +D  A+++A
Sbjct: 181 --EELDEVLKEADIVVNVLPLTEETHHLFDEAFFEQMKKGALFINVGRGPSVDEDALIEA 238

Query: 142 CSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLF-- 199
             +  I G + DV+  +P PKD P   + N  +TPH+SG +       HF      +F  
Sbjct: 239 LKNKQIRGAALDVFEEEPLPKDSPLWDLDNVLITPHISGVS------EHFNERLFDIFYE 292

Query: 200 --TSFLSHKSNSELK 212
              SFL  +    LK
Sbjct: 293 NLKSFL--EDGELLK 305

Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  131 bits (331), Expect = 1e-36
 Identities = 51/123 (41%), Positives = 81/123 (65%), Gaps = 3/123 (2%)

Query: 32  YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP 91
           +DL GKTVG +G G+IG+   + LK F C +L +D    +P+L K  G ++  DLD +L 
Sbjct: 140 FDLHGKTVGVIGTGKIGQAFARILKGFGCRVLAYD-PYPNPELAKL-GVEYV-DLDELLA 196

Query: 92  KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS 151
           + DI+ ++ PLT +T  + + + IAKMK GV+++N +RG ++DT+A+++A  SG I G  
Sbjct: 197 ESDIISLHCPLTPETHHLINAETIAKMKDGVMLINTSRGGLIDTKALIEALKSGKIGGLG 256

Query: 152 GDV 154
            DV
Sbjct: 257 LDV 259

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328

>gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  130 bits (328), Expect = 1e-36
 Identities = 61/166 (36%), Positives = 87/166 (52%), Gaps = 14/166 (8%)

Query: 19  SGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET 78
            G W           L  + V  VG G IG+ + +RL PF   +    RV    +   E 
Sbjct: 119 RGRWEPRRTP----SLADRRVLIVGYGSIGRAIERRLAPFEVRVT---RVARTAR-PGEQ 170

Query: 79  GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAV 138
               +E L  +LP+ D+VV+  PLT++TRG+ D + +A+M  G L+VN ARG ++DT A+
Sbjct: 171 VHGIDE-LPALLPEADVVVLIVPLTDETRGLVDAEFLARMPDGALLVNVARGPVVDTDAL 229

Query: 139 VDACSSGHI-AGYSGDVWNPQPAPKDHP-WRYMPNQAMTPHVSGTT 182
           V   +SG + A    DV +P+P P  HP W   P   +TPHV G T
Sbjct: 230 VAELASGRLRAAL--DVTDPEPLPPGHPLWS-APGVLITPHVGGAT 272

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300

>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  129 bits (326), Expect = 4e-36
 Identities = 55/196 (28%), Positives = 97/196 (49%), Gaps = 20/196 (10%)

Query: 3   ILILVRNFLPGHHQVISG---------EWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQ 53
           +L L RN +     V +G         E       +   +L GKT+G +G G IG+L+  
Sbjct: 95  MLALSRNIIQAIKWVTNGDGDDISKGVEKGKKQ--FVGTELRGKTLGVIGLGNIGRLVAN 152

Query: 54  RLKPFNCNLLYHDRVKMDPQLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTRGMFD 111
                   ++ +D   +  +   +   + +    L+ +L   D + ++ PLT++TRG+ +
Sbjct: 153 AALALGMKVIGYDPY-LSVEAAWKLSVEVQRVTSLEELLATADYITLHVPLTDETRGLIN 211

Query: 112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN 171
            + +AKMK G +++N ARG I+D +A+++A   G + GY  D   P+PA   H     PN
Sbjct: 212 AELLAKMKPGAILLNFARGEIVDEEALLEALDEGKLGGYVTDF--PEPALLGHL----PN 265

Query: 172 QAMTPHVSGTTIDAQV 187
              TPH+  +T +A+ 
Sbjct: 266 VIATPHLGASTEEAEE 281

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305

>gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  126 bits (319), Expect = 3e-35
 Identities = 58/188 (30%), Positives = 101/188 (53%), Gaps = 10/188 (5%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           I++L R     +     G WN    A  ++++ GKT+G +G G IG  L    +     +
Sbjct: 109 IIMLARRLPDRNAAAHRGIWN--KSATGSHEVRGKTLGIIGYGHIGSQLSVLAEALGMRV 166

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           +++D      +L     A+    L+ +L + D V ++ P T  T+ M   + IA+MKKG 
Sbjct: 167 IFYDIA---EKLPLGN-ARQVSSLEELLAEADFVTLHVPATPSTKNMIGAEEIAQMKKGA 222

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPW----RYMPNQAMTPHV 178
           +++N +RG ++D  A+ +A  SGH+AG + DV+  +PA    P+    + +PN  +TPH+
Sbjct: 223 ILINASRGTVVDIDALAEALRSGHLAGAAVDVFPEEPASNGEPFSSPLQGLPNVILTPHI 282

Query: 179 SGTTIDAQ 186
            G+T +AQ
Sbjct: 283 GGSTEEAQ 290

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains

 Score =  125 bits (317), Expect = 1e-34
 Identities = 59/196 (30%), Positives = 96/196 (48%), Gaps = 27/196 (13%)

Query: 1   MRILILVRNFLPGHHQVISGE--WNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPF 58
            + L L+RN      +V  G+  W    +     DL   TVG +G GRIG    +  K F
Sbjct: 111 TQALNLLRNTPEIDRRVAKGDFRWAPGLIGREIRDL---TVGIIGTGRIGSAAAKIFKGF 167

Query: 59  NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKM 118
              ++ +D    +P+LEK       + L+ +L + DI+ ++ PLT++   + + +  AKM
Sbjct: 168 GAKVIAYDPYP-NPELEKFLLYY--DSLEDLLKQADIISLHVPLTKENHHLINAEAFAKM 224

Query: 119 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV-----------WNPQPAPKDHPWR 167
           K G ++VN ARG ++DT+A++DA  SG IAG + D            W+ +    +    
Sbjct: 225 KDGAILVNAARGGLVDTKALIDALDSGKIAGAALDTYENETGYFNKDWSGKEIEDE---V 281

Query: 168 Y-----MPNQAMTPHV 178
                 MPN  +TPH+
Sbjct: 282 LKELIAMPNVLITPHI 297

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  120 bits (303), Expect = 9e-33
 Identities = 63/205 (30%), Positives = 102/205 (49%), Gaps = 29/205 (14%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L L         +V +G W+  G   R  +L GKTVG +G G +GK   +RL  F C +
Sbjct: 107 LLALFNKLNRADQEVRNGIWDREG--NRGVELMGKTVGIIGYGNMGKAFAKRLSGFGCKV 164

Query: 63  LYHDRVKMDPQLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           + +D+        K  G  +  +  L+T+  + DI+ ++ PLT +TRGM +K+ I+  KK
Sbjct: 165 IAYDK-------YKNFGDAYAEQVSLETLFKEADILSLHIPLTPETRGMVNKEFISSFKK 217

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW--------NPQPAPKDHPWRYM--- 169
               +N ARG ++ T+ +V A  SG I G   DV         +    P+   + Y+   
Sbjct: 218 PFYFINTARGKVVVTKDLVKALKSGKILGACLDVLEYEKASFESIFNQPEA--FEYLIKS 275

Query: 170 PNQAMTPHVSGTTID-----AQVIV 189
           P   +TPH++G T +     A+V+V
Sbjct: 276 PKVILTPHIAGWTFESYEKIAEVLV 300

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains

 Score =  120 bits (302), Expect = 2e-32
 Identities = 62/203 (30%), Positives = 105/203 (51%), Gaps = 24/203 (11%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L L R       +   G+++ AG+  R ++L GKT+G VG GRIG+ + +  + F   +
Sbjct: 108 LLALSRKLREAIERTRRGDFSQAGL--RGFELAGKTLGVVGTGRIGRRVARIARGFGMKV 165

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           L +D V  D +L +  G ++   L+ +L + DI+ ++ P T +T  + +++  A MK G 
Sbjct: 166 LAYDVVP-DEELAERLGFRYV-SLEELLQESDIISLHVPYTPQTHHLINRENFALMKPGA 223

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDV-------------WNPQPAP-------K 162
           +++N ARGA++DT+A+V A   G +AG   DV             +    +P        
Sbjct: 224 VLINTARGAVVDTEALVRALKEGKLAGAGLDVLEQEEVLREEAELFREDVSPEDLKKLLA 283

Query: 163 DHPWRYMPNQAMTPHVSGTTIDA 185
           DH     PN  +TPHV+  T +A
Sbjct: 284 DHALLRKPNVIITPHVAYNTKEA 306

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains

 Score =  118 bits (298), Expect = 1e-31
 Identities = 51/181 (28%), Positives = 87/181 (48%), Gaps = 29/181 (16%)

Query: 20  GEWNVAGVAYRAY----DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE 75
            E+ ++ +   A      L+GKTVG VG G +G  L +RL+    N+L  D     P+ E
Sbjct: 95  AEYVLSALLVLAQRQGFSLKGKTVGIVGVGNVGSRLARRLEALGMNVLLCD----PPRAE 150

Query: 76  KETGAKFEEDLDTMLPKCDIVVVNTPLTE----KTRGMFDKDRIAKMKKGVLIVNNARGA 131
            E    F   L+ +L + DI+ ++ PLT      T  + D+D +A +K G +++N +RGA
Sbjct: 151 AEGDPGFV-SLEELLAEADIITLHVPLTRDGEHPTYHLLDEDFLAALKPGQILINASRGA 209

Query: 132 IMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAM-------TPHVSGTTID 184
           ++D QA++     G       DVW  +P           +  +       TPH++G +++
Sbjct: 210 VIDNQALLALLQRGKDLRVVLDVWENEPE---------IDLELLDKVDIATPHIAGYSLE 260

Query: 185 A 185
            
Sbjct: 261 G 261

D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343

>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases

 Score =  117 bits (295), Expect = 2e-31
 Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 5/176 (2%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           IL L RN       + +G W           L GKT+G VG GRIG  + +  + F   +
Sbjct: 113 ILALARNLPEEDAALRAGGWQTTL----GTGLAGKTLGIVGLGRIGARVARIGQAFGMRV 168

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           +      +  +     G +     + +    D+V ++  L+++TRG+   + +A MK   
Sbjct: 169 IAWSS-NLTAERAAAAGVEAAVSKEELFATSDVVSLHLVLSDRTRGLVGAEDLALMKPTA 227

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHV 178
           L+VN +RG ++D  A++ A  +G IAG + DV++ +P P DHP R +PN  +TPH+
Sbjct: 228 LLVNTSRGPLVDEGALLAALRAGRIAGAALDVFDVEPLPADHPLRGLPNVLLTPHI 283

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308

>gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  117 bits (295), Expect = 2e-31
 Identities = 63/211 (29%), Positives = 102/211 (48%), Gaps = 27/211 (12%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           IL L+RN    +        ++        +LE +TVG VG G+IG+ + QR K F   +
Sbjct: 112 ILALLRNR--KYIDERDKNQDLQDAGVIGRELEDQTVGVVGTGKIGRAVAQRAKGFGMKV 169

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           + +D  +  P+LE + G K+   L+ +    DI+ ++ PLT +   M +++    MKKGV
Sbjct: 170 IAYDPFRN-PELEDK-GVKYVS-LEELFKNSDIISLHVPLTPENHHMINEEAFKLMKKGV 226

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDV-----------WNPQ--PAPKDHPWRYM 169
           +I+N ARG+++DT+A+++A  SG I G   DV              +      +      
Sbjct: 227 IIINTARGSLVDTEALIEALDSGKIFGAGLDVLEDETPDLLKDLEGEIFKDALNALLGRR 286

Query: 170 PNQAMTPHVSGTTIDA---------QVIVHF 191
           PN  +TPH +  T DA         + IV F
Sbjct: 287 PNVIITPHTAFYTDDALKNMVEISCENIVDF 317

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323

>gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  115 bits (289), Expect = 8e-31
 Identities = 49/153 (32%), Positives = 82/153 (53%), Gaps = 3/153 (1%)

Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
           L G T+G VG G IG+ L +R       +L    ++   +     G +   DL  +  + 
Sbjct: 133 LAGSTLGIVGFGAIGQALARRALALGMRVL---ALRRSGRPSDVPGVEAAADLAELFARS 189

Query: 94  DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
           D +V+  PLT +TR + + D +A+ K G+ ++N ARG ++D +A+++A  SG I+  S D
Sbjct: 190 DHLVLAAPLTPETRHLINADVLAQAKPGLHLINIARGGLVDQEALLEALDSGRISLASLD 249

Query: 154 VWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQ 186
           V +P+P P+ HP    P   ++PH S    D +
Sbjct: 250 VTDPEPLPEGHPLYTHPRVRLSPHTSAIAPDGR 282

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308

>gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

 Score =  114 bits (286), Expect = 3e-30
 Identities = 59/169 (34%), Positives = 90/169 (53%), Gaps = 4/169 (2%)

Query: 16  QVISGEWNVA-GVAYRAYDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQ 73
           +V +GEW  + G  +   D+  KT+G VG GRIG  L QR    FN  +LY+ R +   +
Sbjct: 124 RVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNAR-RHHKE 182

Query: 74  LEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM 133
            E+   A++  DLDT+L + D V +  PLT++T  +F  ++ AKMK   + +N  RG ++
Sbjct: 183 AEERFNARYC-DLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVV 241

Query: 134 DTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           D  A++ A   G I     DV+  +P   D P   +PN    PH+   T
Sbjct: 242 DENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSAT 290

Length = 323

>gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  112 bits (283), Expect = 8e-30
 Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 12/166 (7%)

Query: 20  GEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG 79
           G W        A +     VG +G G +G  + +RL      +    R   D     E  
Sbjct: 120 GVWK-PLPQRPAAER---RVGVLGLGELGAAVARRLAALGFPVSGWSRSPKDI----EGV 171

Query: 80  AKF--EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQA 137
             F  EE LD  L + DI+V   PLT +TRG+ + + +A++ +G  ++N  RG  +    
Sbjct: 172 TCFHGEEGLDAFLAQTDILVCLLPLTPETRGILNAELLARLPRGAALINVGRGPHLVEAD 231

Query: 138 VVDACSSGHIAGYSGDVWNPQPAPKDHP-WRYMPNQAMTPHVSGTT 182
           ++ A  SGH++G   DV+  +P P DHP WR  P   +TPH++  T
Sbjct: 232 LLAALDSGHLSGAVLDVFEQEPLPADHPLWR-HPRVTVTPHIAAIT 276

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase

 Score =  109 bits (276), Expect = 8e-29
 Identities = 51/185 (27%), Positives = 88/185 (47%), Gaps = 11/185 (5%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYR-AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN 61
           +L ++R        V +G W     A+     + GK VG VG GRIG+ + +RL+ F   
Sbjct: 109 LLAVLRRIPAADRFVRAGRW--PKGAFPLTRKVSGKRVGIVGLGRIGRAIARRLEAFGME 166

Query: 62  LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKM-KK 120
           + YH R         +   ++   L  +  + D++VV  P    TR + + + +  +   
Sbjct: 167 IAYHGRRPKP-----DVPYRYYASLLELAAESDVLVVACPGGPATRHLVNAEVLEALGPD 221

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVL+ N ARG+++D  A++ A   G IAG   DV+  +P         + N  +TPH++ 
Sbjct: 222 GVLV-NVARGSVVDEAALIAALQEGRIAGAGLDVFENEPNVPA-ALLDLDNVVLTPHIAS 279

Query: 181 TTIDA 185
            T++ 
Sbjct: 280 ATVET 284

Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301

>gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein

 Score =  106 bits (266), Expect = 4e-27
 Identities = 60/160 (37%), Positives = 85/160 (53%), Gaps = 11/160 (6%)

Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDR---VKMDPQLEKETGAKFE------- 83
           L GKTV  +G G IG  L +RL+PF   LL   R    + +  L    G   +       
Sbjct: 157 LFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGG 216

Query: 84  -EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDAC 142
            ED+     + DIVV+   LT++T G+ + + ++ MKKG L+VN ARG ++D  AV+ A 
Sbjct: 217 HEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAAL 276

Query: 143 SSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
            SGH+ G + DV   +P   D P    PN  +TPHV+G T
Sbjct: 277 ESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVT 316

Length = 347

>gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains

 Score =  103 bits (258), Expect = 4e-26
 Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 19/163 (11%)

Query: 38  TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVV 97
           TVG +G GRIG    +  K     ++ +D   + P    +    F   LD +L K DI+ 
Sbjct: 147 TVGIIGTGRIGLTAAKLFKGLGAKVIGYD---IYPSDAAKDVVTFV-SLDELLKKSDIIS 202

Query: 98  VNTP-LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 156
           ++ P +  K   + +K+ I+KMK G +++N ARG + D +A+++A  SG +AG+  DV N
Sbjct: 203 LHVPYIKGKNDKLINKEFISKMKDGAILINTARGELQDEEAILEALESGKLAGFGTDVLN 262

Query: 157 PQPAP--KDHPWRYMPNQA------------MTPHVSGTTIDA 185
            +     KD     + +              +TPH+   T +A
Sbjct: 263 NEKEIFFKDFDGDKIEDPVVEKLLDLYPRVLLTPHIGSYTDEA 305

(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330

>gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  103 bits (258), Expect = 5e-26
 Identities = 59/208 (28%), Positives = 90/208 (43%), Gaps = 22/208 (10%)

Query: 4   LILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL 63
           L+L  +FL          W     AY   D  GK VG +G G IG+   +  +     + 
Sbjct: 101 LVLSHHFLQYIELQKEQTWGRRQEAYSVEDSVGKRVGILGYGSIGRQTARLAQALGMEVY 160

Query: 64  -YHDRVKMDPQLEKETG--------------AKF-----EEDLDTML-PKCDIVVVNTPL 102
            Y    +  P+  K+ G              + +     +  L   L    D++VV+ PL
Sbjct: 161 AYTRSPRPTPESRKDDGYIVPGTGDPDGSIPSAWFSGTDKASLHEFLRQDLDLLVVSLPL 220

Query: 103 TEKTRGMFDKDRIAKM-KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP 161
           T  T+ +   +    + K+   + N ARG+++DT A+V A  SG I G + DV +P+P P
Sbjct: 221 TPATKHLLGAEEFEILAKRKTFVSNIARGSLVDTDALVAALESGQIRGAALDVTDPEPLP 280

Query: 162 KDHPWRYMPNQAMTPHVSGTTIDAQVIV 189
            DHP    PN  +TPHVS  T +     
Sbjct: 281 ADHPLWSAPNVIITPHVSWQTQEYFDRA 308

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 334

>gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

 Score =  102 bits (256), Expect = 6e-26
 Identities = 51/185 (27%), Positives = 77/185 (41%), Gaps = 3/185 (1%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN- 61
           IL L R        V +G+W          +L GKT+G +G G IG +     K      
Sbjct: 105 ILALARRIPEADASVRAGDWK--KGGPIGLELYGKTLGVIGGGGIGGIGAAIAKALGMGV 162

Query: 62  LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
           + Y      +   E        + L   L + D ++   P T    G    +    M K 
Sbjct: 163 VAYDPYPNPERAEEGGVEVLLLDLLLLDLKESDDLINLAPPTTMKTGHIIINEARGMLKD 222

Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT 181
            + +NNARG  +  +A +DA     IA  + DV   +P P + P   +PN  +TPH++G 
Sbjct: 223 AVAINNARGGGVIEEAALDALLEEGIAAAALDVVEEEPPPVNSPLLDLPNVILTPHIAGA 282

Query: 182 TIDAQ 186
           T +AQ
Sbjct: 283 TEEAQ 287

This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312

>gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional

 Score =  102 bits (256), Expect = 6e-26
 Identities = 59/196 (30%), Positives = 94/196 (47%), Gaps = 14/196 (7%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAG----VAYRAYDLEGKTVGTVGCGRIGKLLLQRLK 56
             +L L          V +G W  +     + +   +LEGKT+G +G G +G  + +  +
Sbjct: 109 ALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAE 168

Query: 57  PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA 116
            F   +L         QL           LD +LP+ D + ++ PLTE TR +     +A
Sbjct: 169 AFGMRVLI-------GQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELA 221

Query: 117 KMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRY--MPNQAM 174
            MK G L++N ARG ++D QA+ DA  SGH+ G + DV + +P    +P     +P   +
Sbjct: 222 LMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIV 281

Query: 175 TPHVSGTTIDA-QVIV 189
           TPH +  + +A Q IV
Sbjct: 282 TPHSAWGSREARQRIV 297

Length = 317

>gnl|CDD|236985 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase; Provisional

 Score = 99.5 bits (249), Expect = 2e-24
 Identities = 58/189 (30%), Positives = 99/189 (52%), Gaps = 12/189 (6%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           I++L+R     + +   G WN    A  ++++ GKT+G VG G IG  L    +     +
Sbjct: 120 IILLLRGIPEKNAKAHRGGWN--KSAAGSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRV 177

Query: 63  LYHDRVKMDPQLEKETG-AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
            ++D     P      G A+    L+ +L + D+V ++ P T  T+ M   + +A MK G
Sbjct: 178 YFYDIEDKLP-----LGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPG 232

Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPW----RYMPNQAMTPH 177
            +++N +RG ++D  A+ DA  SGH+AG + DV+  +P     P+    R + N  +TPH
Sbjct: 233 AILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPH 292

Query: 178 VSGTTIDAQ 186
           + G+T +AQ
Sbjct: 293 IGGSTQEAQ 301

Length = 409

>gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional

 Score = 98.1 bits (245), Expect = 3e-24
 Identities = 40/158 (25%), Positives = 77/158 (48%), Gaps = 11/158 (6%)

Query: 32  YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE-DLDTML 90
            +++GK  G +G G IGK + +  + F   ++Y+          K    ++E   L+ +L
Sbjct: 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSG------KNKNEEYERVSLEELL 194

Query: 91  PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY 150
              DI+ ++ PL EKT+ +     +  +K G +++N  RG I++ + +  A     I   
Sbjct: 195 KTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDI-YA 253

Query: 151 SGDVWNPQPAPKDHPWRYMPNQA---MTPHVSGTTIDA 185
             DV   +P  K+HP   + N+    +TPH++  + +A
Sbjct: 254 GLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKEA 291

Length = 311

>gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional

 Score = 93.3 bits (232), Expect = 2e-22
 Identities = 52/180 (28%), Positives = 89/180 (49%), Gaps = 14/180 (7%)

Query: 14  HHQVISGEWNVAG----VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK 69
           +   +S  W          Y   D+ G T+G  G G +G  + +  +     +LY +   
Sbjct: 121 YRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEH-- 178

Query: 70  MDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR 129
               + +E    FEE    +L + DIV ++ PLTE T+ + + + +A MK    ++N  R
Sbjct: 179 KGASVCREGYTPFEE----VLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGR 234

Query: 130 GAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPW----RYMPNQAMTPHVSGTTIDA 185
           G ++D QA++DA  +G IAG + DV   +P  KD+P     + +PN  +TPH++  +  A
Sbjct: 235 GPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIAWASDSA 294

Length = 314

>gnl|CDD|166874 PRK00257, PRK00257, erythronate-4-phosphate dehydrogenase; Validated

 Score = 85.5 bits (212), Expect = 2e-19
 Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 11/159 (6%)

Query: 30  RAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTM 89
              DL  +T G VG G +G  L++ L+     +L  D     P+ E E    F   L+ +
Sbjct: 110 EGVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCD----PPRQEAEGDGDFV-SLERI 164

Query: 90  LPKCDIVVVNTPLTE----KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 145
           L +CD++ ++TPLT+     TR + D+  +A ++ G  ++N +RGA++D QA+ +A  SG
Sbjct: 165 LEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSG 224

Query: 146 HIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTID 184
                  DVW  +  P+            TPH++G ++D
Sbjct: 225 EDLDAVLDVWEGE--PQIDLELADLCTIATPHIAGYSLD 261

Length = 381

>gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 80.1 bits (198), Expect = 1e-17
 Identities = 35/98 (35%), Positives = 53/98 (54%)

Query: 83  EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDAC 142
           E++L  +LP+ D++V+  P T  T    D + +A + K   +VN  RGA +D  A+V A 
Sbjct: 187 EDELPELLPETDVLVMILPATPSTAHALDAEVLAALPKHAWVVNVGRGATVDEDALVAAL 246

Query: 143 SSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
            SG + G + DV   +P P   P    PN  +TPH +G
Sbjct: 247 ESGRLGGAALDVTATEPLPASSPLWDAPNLILTPHAAG 284

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional

 Score = 73.4 bits (180), Expect = 2e-15
 Identities = 38/147 (25%), Positives = 74/147 (50%), Gaps = 8/147 (5%)

Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
           L  K++G +G G IG+ +    K F  N+  + R         +  +    + + ++ K 
Sbjct: 120 LYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTR-----SYVNDGISSIYMEPEDIMKKS 174

Query: 94  DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
           D V+++ PLT++TRGM +   ++  +KG+ I+N AR  ++D   +++   + +   Y  D
Sbjct: 175 DFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSD 234

Query: 154 VWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           VW  +P   +       N  ++PHV+G
Sbjct: 235 VWWNEPIITETNPD---NVILSPHVAG 258

Length = 303

>gnl|CDD|185366 PRK15469, ghrA, bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

 Score = 69.4 bits (170), Expect = 6e-14
 Identities = 44/159 (27%), Positives = 80/159 (50%), Gaps = 6/159 (3%)

Query: 32  YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV-KMDPQLEKETGAKFEEDLDTML 90
           Y  E  T+G +G G +G  + Q L+ +   L    R  K  P ++   G    E+L   L
Sbjct: 132 YHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGR---EELSAFL 188

Query: 91  PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY 150
            +  +++   P T +T G+ ++  + ++  G  ++N ARG  +    ++ A  SG + G 
Sbjct: 189 SQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGA 248

Query: 151 SGDVWNPQPAPKDHP-WRYMPNQAMTPHVSGTTIDAQVI 188
             DV++ +P P + P W++ P  A+TPHV+  T  A+ +
Sbjct: 249 MLDVFSREPLPPESPLWQH-PRVAITPHVAAVTRPAEAV 286

Length = 312

>gnl|CDD|185335 PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional

 Score = 66.1 bits (161), Expect = 1e-12
 Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 25/166 (15%)

Query: 32  YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP 91
           + L  +TVG VG G +G+ L  RL+      L  D     P+ ++     F   LD ++ 
Sbjct: 112 FSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCD----PPRADRGDEGDFRS-LDELVQ 166

Query: 92  KCDIVVVNTPLTE----KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 147
           + DI+  +TPL +    KT  + D+  I  +K G +++N  RGA++D  A++   + G  
Sbjct: 167 EADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQK 226

Query: 148 AGYSGDVWNPQPAPKDHPWRYMPNQAM-------TPHVSGTTIDAQ 186
                DVW  +P           N  +       TPH++G T++ +
Sbjct: 227 LSVVLDVWEGEPE---------LNVELLKKVDIGTPHIAGYTLEGK 263

Length = 378

>gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase

 Score = 65.3 bits (159), Expect = 2e-12
 Identities = 46/163 (28%), Positives = 83/163 (50%), Gaps = 20/163 (12%)

Query: 34  LEGKTVGTVGCGRIGKLLLQRL-KPFNCNLLYHDRVKMDPQLEKETGA------------ 80
           L+G+TVG +G GRIG    + + + F  NL+Y+D +    +LEK   A            
Sbjct: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD-LYQSTRLEKFVTAYGQFLKANGEQP 221

Query: 81  ---KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQA 137
              K    ++ +L + D++ ++  L + T  + +K+R+A MKK  ++VN +RG ++D  A
Sbjct: 222 VTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVA 281

Query: 138 VVDACSSGHIAGYSGDVWNPQPAPKDHP-WRYMPNQAMTPHVS 179
           +V+   +  +     DV+  +P  K  P    M N  + PH++
Sbjct: 282 LVEHLKANPMFRVGLDVFEDEPYMK--PGLADMKNAVVVPHIA 322

Length = 386

>gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated

 Score = 65.2 bits (159), Expect = 2e-12
 Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 10/122 (8%)

Query: 38  TVGTVGCGRIGKLLLQRL-KPFNCNLLYHD---RVKMDPQLEKETGAKFEEDLDTMLPKC 93
            V  +G GRIG  + +   K +  +++ +D     K    ++      +++ ++  +   
Sbjct: 148 KVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAATYVD------YKDTIEEAVEGA 201

Query: 94  DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
           DIV ++ P T+    +F+ D     KKG + VN ARG+++DT+A++DA  +G I G + D
Sbjct: 202 DIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALD 261

Query: 154 VW 155
            +
Sbjct: 262 TY 263

Length = 332

>gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional

 Score = 62.2 bits (151), Expect = 2e-11
 Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 8/120 (6%)

Query: 38  TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ--LEKETGAKFEEDLDTMLPKCDI 95
           TV  +G GRIG    +    F   +  +D         L       +++ +   +   DI
Sbjct: 148 TVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLT------YKDSVKEAIKDADI 201

Query: 96  VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW 155
           + ++ P  +++  +FDK     +KKG ++VN ARGA+++T  ++ A + G + G + D +
Sbjct: 202 ISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTY 261

Length = 330

>gnl|CDD|240647 cd12170, 2-Hacid_dh_9, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 48.8 bits (117), Expect = 6e-07
 Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 9/157 (5%)

Query: 31  AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML 90
             +L G  VG +G G  G+++   L  F  ++ Y+ R +  P  E +        L+ +L
Sbjct: 133 PRELTGLKVGIIGLGTTGQMIADALSFFGADVYYYSRTR-KPDAEAKGIRYLP--LNELL 189

Query: 91  PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY 150
              D++    P   K   +  ++    +  G ++ N + G   + +A+     +     +
Sbjct: 190 KTVDVICTCLP---KNVILLGEEEFELLGDGKILFNTSLGPSFEVEALKKWLKASGYNIF 246

Query: 151 SGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQV 187
             D      A  D      PN   T   +G T  A  
Sbjct: 247 DCDT---AGALGDEELLRYPNVICTNKSAGWTRQAFE 280

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 294

>gnl|CDD|224626 COG1712, COG1712, Predicted dinucleotide-utilizing enzyme [General function prediction only]

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 38 TVGTVGCGRIGKLLLQRLK----PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
           VG VGCG IGK LL+ ++     F    +Y    +   +LE   G +   D+D ++ + 
Sbjct: 2  KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEV 61

Query: 94 DIVV 97
          D+VV
Sbjct: 62 DLVV 65

Length = 255

>gnl|CDD|237343 PRK13304, PRK13304, L-aspartate dehydrogenase; Reviewed

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 39 VGTVGCGRIGKLLLQRLKP--FNCNLLY-HDR-VKMDPQLEKETGAKFEEDLDTMLPKCD 94
          +G VGCG I  L+ + +     N  L   +DR ++    L  +TGAK    +D ++   D
Sbjct: 4  IGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVD 63

Query: 95 IVV 97
          +VV
Sbjct: 64 LVV 66

Length = 265

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	240
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	100.0
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	100.0
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	100.0
PLN03139	386	formate dehydrogenase; Provisional	100.0
PRK06487	317	glycerate dehydrogenase; Provisional	100.0
PRK07574	385	formate dehydrogenase; Provisional	100.0
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	100.0
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PRK06932	314	glycerate dehydrogenase; Provisional	100.0
PLN02928	347	oxidoreductase family protein	100.0
PRK13243	333	glyoxylate reductase; Reviewed	100.0
PLN02306	386	hydroxypyruvate reductase	100.0
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	100.0
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	100.0
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	100.0
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	100.0
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PRK06436	303	glycerate dehydrogenase; Provisional	100.0
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	100.0
PRK12480	330	D-lactate dehydrogenase; Provisional	100.0
PRK08605	332	D-lactate dehydrogenase; Validated	100.0
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	100.0
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	100.0
KOG0067	435	consensus Transcription factor CtBP [Transcription	99.89
PTZ00075	476	Adenosylhomocysteinase; Provisional	99.77
PLN02494	477	adenosylhomocysteinase	99.71
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	99.67
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.64
PRK13403	335	ketol-acid reductoisomerase; Provisional	99.62
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.62
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.53
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.53
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.5
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.49
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	99.47
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.45
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	99.43
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	99.43
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.42
PRK15059	292	tartronate semialdehyde reductase; Provisional	99.4
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.37
PLN02256	304	arogenate dehydrogenase	99.35
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	99.35
KOG0409	327	consensus Predicted dehydrogenase [General functio	99.34
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.33
PLN02858	1378	fructose-bisphosphate aldolase	99.32
PLN02712	667	arogenate dehydrogenase	99.31
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	99.31
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	99.3
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	99.28
PLN02858	1378	fructose-bisphosphate aldolase	99.26
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.26
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	99.24
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	99.21
PRK08655	437	prephenate dehydrogenase; Provisional	99.2
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	99.19
PLN02712	667	arogenate dehydrogenase	99.17
PRK05225	487	ketol-acid reductoisomerase; Validated	99.16
PRK07417	279	arogenate dehydrogenase; Reviewed	99.15
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	99.15
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	99.12
PLN02688	266	pyrroline-5-carboxylate reductase	99.08
PRK08507	275	prephenate dehydrogenase; Validated	99.08
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	99.08
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	99.06
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	99.05
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.05
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.03
PRK06545	359	prephenate dehydrogenase; Validated	99.03
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	99.02
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	99.02
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	99.02
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	99.01
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.01
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.01
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	99.0
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.99
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	98.99
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	98.98
PRK08818	370	prephenate dehydrogenase; Provisional	98.98
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.97
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.95
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.94
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	98.94
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	98.93
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	98.92
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	98.92
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.89
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	98.88
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.88
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.86
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.86
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	98.86
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.86
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	98.85
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.84
PRK07680	273	late competence protein ComER; Validated	98.83
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.82
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.8
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	98.8
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.8
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	98.78
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.78
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	98.78
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.77
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.76
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	98.74
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	98.72
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	98.69
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	98.68
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.67
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	98.67
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.64
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	98.61
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	98.6
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.59
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	98.56
PRK13304	265	L-aspartate dehydrogenase; Reviewed	98.56
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.54
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.51
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	98.5
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	98.5
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	98.48
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	98.46
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	98.46
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	98.44
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	98.43
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.43
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.42
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	98.42
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	98.42
PLN02353	473	probable UDP-glucose 6-dehydrogenase	98.42
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	98.41
PTZ00431	260	pyrroline carboxylate reductase; Provisional	98.39
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	98.35
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	98.35
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	98.34
PLN00203	519	glutamyl-tRNA reductase	98.34
PRK06141	314	ornithine cyclodeaminase; Validated	98.33
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	98.32
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.32
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	98.31
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	98.3
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.28
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	98.27
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.26
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	98.26
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	98.25
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	98.25
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	98.24
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.22
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.22
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	98.21
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	98.2
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	98.2
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	98.19
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.18
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.18
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	98.18
PRK13940	414	glutamyl-tRNA reductase; Provisional	98.12
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.12
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	98.1
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	98.1
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.09
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.05
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	98.04
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	98.03
PRK07340	304	ornithine cyclodeaminase; Validated	98.02
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	98.02
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.01
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.01
PRK11730	715	fadB multifunctional fatty acid oxidation complex	98.0
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.0
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.0
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.99
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.98
PRK08618	325	ornithine cyclodeaminase; Validated	97.97
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.97
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.96
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.96
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	97.96
PRK13303	265	L-aspartate dehydrogenase; Provisional	97.96
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	97.94
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.93
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	97.93
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	97.93
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.93
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	97.92
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	97.92
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.92
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.91
PRK06046	326	alanine dehydrogenase; Validated	97.91
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	97.91
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.91
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	97.9
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.9
PTZ00117	319	malate dehydrogenase; Provisional	97.9
PRK14031	444	glutamate dehydrogenase; Provisional	97.89
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.89
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.89
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.89
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.88
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	97.87
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	97.87
PRK14982	340	acyl-ACP reductase; Provisional	97.86
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	97.85
PRK06444	197	prephenate dehydrogenase; Provisional	97.85
PRK08291	330	ectoine utilization protein EutC; Validated	97.83
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	97.83
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.82
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.81
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	97.8
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	97.8
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.79
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	97.78
PRK06823	315	ornithine cyclodeaminase; Validated	97.78
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.78
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	97.78
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.78
PRK14030	445	glutamate dehydrogenase; Provisional	97.77
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	97.77
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	97.75
PRK06199	379	ornithine cyclodeaminase; Validated	97.75
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.74
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.73
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	97.73
PRK00048	257	dihydrodipicolinate reductase; Provisional	97.72
PLN02477	410	glutamate dehydrogenase	97.7
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	97.7
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.7
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	97.66
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	97.66
PRK09414	445	glutamate dehydrogenase; Provisional	97.65
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	97.64
PRK07589	346	ornithine cyclodeaminase; Validated	97.64
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.63
PRK06407	301	ornithine cyclodeaminase; Provisional	97.63
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	97.62
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	97.61
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	97.57
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	97.55
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.54
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.48
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.46
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	97.45
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	97.45
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.44
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.43
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	97.4
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.39
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	97.39
TIGR00670	301	asp_carb_tr aspartate carbamoyltransferase. Ornith	97.36
PTZ00082	321	L-lactate dehydrogenase; Provisional	97.35
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	97.35
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	97.34
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.33
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	97.32
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	97.32
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.3
PRK09496	453	trkA potassium transporter peripheral membrane com	97.3
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	97.29
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.28
PRK08306	296	dipicolinate synthase subunit A; Reviewed	97.28
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	97.28
PRK06223	307	malate dehydrogenase; Reviewed	97.27
PRK00779	304	ornithine carbamoyltransferase; Provisional	97.24
COG0540	316	PyrB Aspartate carbamoyltransferase, catalytic cha	97.24
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.24
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	97.23
PLN02342	348	ornithine carbamoyltransferase	97.22
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	97.21
PLN02178	375	cinnamyl-alcohol dehydrogenase	97.19
PLN02527	306	aspartate carbamoyltransferase	97.19
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	97.18
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	97.18
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	97.17
PRK02255	338	putrescine carbamoyltransferase; Provisional	97.17
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	97.17
PRK03659	601	glutathione-regulated potassium-efflux system prot	97.16
TIGR00658	304	orni_carb_tr ornithine carbamoyltransferase. Most	97.14
PLN02353	473	probable UDP-glucose 6-dehydrogenase	97.14
PRK10669	558	putative cation:proton antiport protein; Provision	97.13
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	97.13
PRK13814	310	pyrB aspartate carbamoyltransferase catalytic subu	97.12
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	97.12
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	97.11
PLN02586	360	probable cinnamyl alcohol dehydrogenase	97.11
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.11
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	97.1
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	97.09
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	97.08
PRK04148	134	hypothetical protein; Provisional	97.07
PRK02102	331	ornithine carbamoyltransferase; Validated	97.06
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.06
PRK08300	302	acetaldehyde dehydrogenase; Validated	97.06
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.05
PRK04284	332	ornithine carbamoyltransferase; Provisional	97.04
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	97.04
PRK01713	334	ornithine carbamoyltransferase; Provisional	97.03
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	97.02
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	97.02
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.0
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	96.99
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	96.99
PF00389	133	2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr	96.98
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	96.97
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	96.96
PRK03515	336	ornithine carbamoyltransferase subunit I; Provisio	96.93
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	96.93
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	96.9
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.9
PRK05086	312	malate dehydrogenase; Provisional	96.89
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	96.88
COG5322	351	Predicted dehydrogenase [General function predicti	96.85
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	96.83
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.83
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.83
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	96.81
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.8
PRK11891	429	aspartate carbamoyltransferase; Provisional	96.8
PRK12562	334	ornithine carbamoyltransferase subunit F; Provisio	96.77
TIGR00036	266	dapB dihydrodipicolinate reductase.	96.77
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	96.74
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.74
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	96.73
PRK11579	346	putative oxidoreductase; Provisional	96.72
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	96.72
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	96.72
PRK06270	341	homoserine dehydrogenase; Provisional	96.7
PRK09496	453	trkA potassium transporter peripheral membrane com	96.69
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.68
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	96.68
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	96.67
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	96.65
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	96.64
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.63
PTZ00325	321	malate dehydrogenase; Provisional	96.63
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	96.6
TIGR03316	357	ygeW probable carbamoyltransferase YgeW. Members o	96.59
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	96.59
PRK10637	457	cysG siroheme synthase; Provisional	96.57
PRK10206	344	putative oxidoreductase; Provisional	96.57
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.56
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	96.55
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	96.55
PRK08192	338	aspartate carbamoyltransferase; Provisional	96.54
COG0673	342	MviM Predicted dehydrogenases and related proteins	96.54
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	96.53
PRK07200	395	aspartate/ornithine carbamoyltransferase family pr	96.53
PLN02514	357	cinnamyl-alcohol dehydrogenase	96.52
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.5
PRK05562	223	precorrin-2 dehydrogenase; Provisional	96.5
PRK06349	426	homoserine dehydrogenase; Provisional	96.47
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	96.46
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	96.46
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	96.45
COG2910	211	Putative NADH-flavin reductase [General function p	96.43
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	96.4
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.38
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	96.37
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	96.36
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	96.36
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	96.35
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.35
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.33
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.32
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	96.31
CHL00194	317	ycf39 Ycf39; Provisional	96.3
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.3
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	96.29
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	96.27
PLN02740	381	Alcohol dehydrogenase-like	96.27
PF05222	136	AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal	96.25
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	96.25
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	96.24
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	96.23
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	96.23
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	96.21
PLN02602	350	lactate dehydrogenase	96.21
PLN00106	323	malate dehydrogenase	96.2
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	96.2
PRK08223	287	hypothetical protein; Validated	96.2
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.19
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	96.19
PRK08328	231	hypothetical protein; Provisional	96.18
PLN02383	344	aspartate semialdehyde dehydrogenase	96.18
COG0078	310	ArgF Ornithine carbamoyltransferase [Amino acid tr	96.17
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	96.17
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	96.15
PRK14804	311	ornithine carbamoyltransferase; Provisional	96.15
KOG3124	267	consensus Pyrroline-5-carboxylate reductase [Amino	96.11
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	96.09
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	96.09
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	96.09
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	96.08
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	96.06
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.05
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	96.04
PRK06392	326	homoserine dehydrogenase; Provisional	96.04
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.02
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	96.01
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	96.0
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	95.99
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	95.98
PLN02948	577	phosphoribosylaminoimidazole carboxylase	95.98
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	95.96
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	95.96
PRK13376	525	pyrB bifunctional aspartate carbamoyltransferase c	95.93
PRK05442	326	malate dehydrogenase; Provisional	95.92
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	95.91
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	95.9
PRK08265	261	short chain dehydrogenase; Provisional	95.9
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	95.9
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	95.9
TIGR01161	352	purK phosphoribosylaminoimidazole carboxylase, Pur	95.89
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	95.87
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	95.87
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	95.85
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	95.85
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	95.84
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.83
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	95.81
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.8
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	95.79
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	95.77
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.76
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	95.75
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	95.74
COG2344	211	AT-rich DNA-binding protein [General function pred	95.73
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	95.67
COG0281	432	SfcA Malic enzyme [Energy production and conversio	95.67
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	95.65
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	95.65
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	95.64
PRK07877	722	hypothetical protein; Provisional	95.64
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.61
PRK03815	401	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.6
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.59
PRK12862	763	malic enzyme; Reviewed	95.59
PLN02827	378	Alcohol dehydrogenase-like	95.59
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	95.59
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	95.57
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	95.55
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	95.54
PF04016	147	DUF364: Domain of unknown function (DUF364); Inter	95.51
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	95.49
PRK07411	390	hypothetical protein; Validated	95.44
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	95.43
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	95.43
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	95.42
PRK10083	339	putative oxidoreductase; Provisional	95.42
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	95.41
PLN00112	444	malate dehydrogenase (NADP); Provisional	95.41
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	95.4
PLN03209	576	translocon at the inner envelope of chloroplast su	95.39
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	95.37
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	95.37
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	95.36
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	95.35
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	95.34
PRK15076	431	alpha-galactosidase; Provisional	95.34
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.32
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	95.32
PRK14805	302	ornithine carbamoyltransferase; Provisional	95.31
PRK04523	335	N-acetylornithine carbamoyltransferase; Reviewed	95.29
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	95.28
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	95.28
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	95.28
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	95.27
PRK08324	681	short chain dehydrogenase; Validated	95.26
PRK12861	764	malic enzyme; Reviewed	95.24
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	95.2
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	95.19
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	95.17
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	95.16
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	95.15
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	95.11
PRK07806	248	short chain dehydrogenase; Provisional	95.1
PRK08374	336	homoserine dehydrogenase; Provisional	95.06
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	95.03
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	95.01
TIGR00112	245	proC pyrroline-5-carboxylate reductase. This enzym	95.0
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	94.99
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	94.98
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	94.94
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	94.93
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	94.93
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	94.91
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	94.89
PRK06128	300	oxidoreductase; Provisional	94.88
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	94.86
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	94.85
PRK06182	273	short chain dehydrogenase; Validated	94.84
PRK05866	293	short chain dehydrogenase; Provisional	94.82
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	94.81
PRK14851	679	hypothetical protein; Provisional	94.78
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	94.74
PRK12814	652	putative NADPH-dependent glutamate synthase small	94.74
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	94.73
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	94.71

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=100.00  E-value=6.4e-56  Score=394.21  Aligned_cols=203  Identities=34%  Similarity=0.579  Sum_probs=188.3

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      ++||+++|+++.+++.+++|.|.+..  ..+.+|.|||+||||+|+||+.+|+++++|||+|++||+.. +.+.....++
T Consensus       109 ~~~L~~~R~~~~~~~~~~~g~W~~~~--~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~-~~~~~~~~~~  185 (324)
T COG0111         109 ALLLALARRIPDADASQRRGEWDRKA--FRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYS-PRERAGVDGV  185 (324)
T ss_pred             HHHHHHhcCchhhHHHHHcCCccccc--cccccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCC-chhhhccccc
Confidence            47999999999999999999998732  34679999999999999999999999999999999999943 2333444466


Q ss_pred             eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (240)
Q Consensus        81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  160 (240)
                      ....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|.||+||||++||+
T Consensus       186 ~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl  265 (324)
T COG0111         186 VGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPL  265 (324)
T ss_pred             eecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCC
Confidence            66779999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC
Q 026360          161 PKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN  208 (240)
Q Consensus       161 ~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~  208 (240)
                      |.+||||++|||++|||+||+|.|+++++..  .+.+|+.+|+.|.++
T Consensus       266 ~~~~pL~~~pnV~~TPHia~~T~ea~~~~~~--~~~~~i~~~l~g~~~  311 (324)
T COG0111         266 PADSPLWDLPNVILTPHIGGSTDEAQERVAE--IVAENIVRYLAGGPV  311 (324)
T ss_pred             CCCChhhcCCCeEECCcccccCHHHHHHHHH--HHHHHHHHHHcCCCC
Confidence            9999999999999999999999999999999  999999999999975

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=100.00  E-value=4.7e-53  Score=376.63  Aligned_cols=208  Identities=30%  Similarity=0.507  Sum_probs=188.1

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccC-cccccccccCCCeEEEEccChHHHHHHHHhc-cCCCEEEEEcCCCCChhHHHhc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVA-GVAYRAYDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEKET   78 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~-~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~-~~G~~V~~~d~~~~~~~~~~~~   78 (240)
                      +|||++.|++...++.+++|.|... .....+.+|.||++||||+|+||+.+|++++ +|||+|++||+.. +.+.....
T Consensus       109 ~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~-~~~~~~~~  187 (323)
T PRK15409        109 ALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRH-HKEAEERF  187 (323)
T ss_pred             HHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCC-chhhHHhc
Confidence            5899999999999999999999642 1112367899999999999999999999998 9999999999864 23333445


Q ss_pred             CceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCC
Q 026360           79 GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ  158 (240)
Q Consensus        79 g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~E  158 (240)
                      ++... ++++++++||+|++|+|+|++|+++++++.|++||||++|||+|||++||++||++||++|+|.||+||||++|
T Consensus       188 ~~~~~-~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~E  266 (323)
T PRK15409        188 NARYC-DLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQE  266 (323)
T ss_pred             CcEec-CHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCC
Confidence            66655 99999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC-CCCc
Q 026360          159 PAPKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN-SELK  212 (240)
Q Consensus       159 P~~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v~  212 (240)
                      |++.++|||.+|||++|||+||.|.++..++..  .+.+|+.+|++|+++ +.||
T Consensus       267 P~~~~~pL~~~~nvilTPHia~~t~e~~~~~~~--~~~~ni~~~~~g~~~~~~vn  319 (323)
T PRK15409        267 PLSVDSPLLSLPNVVAVPHIGSATHETRYNMAA--CAVDNLIDALQGKVEKNCVN  319 (323)
T ss_pred             CCCCCchhhcCCCEEEcCcCCCCcHHHHHHHHH--HHHHHHHHHHcCCCCCcccC
Confidence            999999999999999999999999999999999  999999999999865 5555

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=100.00  E-value=1.8e-52  Score=371.92  Aligned_cols=208  Identities=38%  Similarity=0.664  Sum_probs=191.4

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCc--ccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAG--VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET   78 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~--~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~   78 (240)
                      +|||++.|++.++++++++|.|...+  ....+.+++|||+||||+|+||+++|+++++|||+|++||+++. ++..+..
T Consensus       109 aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~  187 (324)
T COG1052         109 ALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKEL  187 (324)
T ss_pred             HHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhc
Confidence            58999999999999999999998753  22356789999999999999999999999999999999999875 5555666


Q ss_pred             CceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCC
Q 026360           79 GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ  158 (240)
Q Consensus        79 g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~E  158 (240)
                      ++.+. ++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||++||++||++||++|+|.||++|||+.|
T Consensus       188 ~~~y~-~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~E  266 (324)
T COG1052         188 GARYV-DLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENE  266 (324)
T ss_pred             Cceec-cHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCCC
Confidence            67777 49999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCC---eEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC-CCCc
Q 026360          159 PAPKDHPWRYMPN---QAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN-SELK  212 (240)
Q Consensus       159 P~~~~~~l~~~~n---v~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v~  212 (240)
                      |.+.++||+.++|   +++|||+|++|.|++.++..  .+.+|+.+|++|+.. +.|+
T Consensus       267 p~~~d~~l~~l~~~~~vvltPHia~at~ea~~~m~~--~~~~nl~~~~~g~~~~~~v~  322 (324)
T COG1052         267 PALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAE--LALENLEAFFDGGVPPNEVN  322 (324)
T ss_pred             CCCCChhHhhccCCCCEEEccccccccHHHHHHHHH--HHHHHHHHHHcCCCCCCCCC
Confidence            9988999998887   99999999999999999999  999999999998755 5554

>PLN03139 formate dehydrogenase; Provisional

Probab=100.00  E-value=2.4e-52  Score=378.36  Aligned_cols=212  Identities=79%  Similarity=1.297  Sum_probs=194.6

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      ++||++.|++.+.++.+++|.|........+++|.|++|||||+|+||+.+|++|++||++|++||++..+.+.....|+
T Consensus       164 ~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~  243 (386)
T PLN03139        164 MRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGA  243 (386)
T ss_pred             HHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCc
Confidence            58999999999999999999997533223467899999999999999999999999999999999987655555556677


Q ss_pred             eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (240)
Q Consensus        81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  160 (240)
                      ....++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||++||++||+++|++|+|.||++|||++||+
T Consensus       244 ~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPl  323 (386)
T PLN03139        244 KFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPA  323 (386)
T ss_pred             eecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCC
Confidence            76679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCCCCCccc
Q 026360          161 PKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSNSELKYC  214 (240)
Q Consensus       161 ~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~  214 (240)
                      |.+||||.+||+++|||+||.|.+++.++..  .+.+|+.+|++|+++.+.+..
T Consensus       324 p~d~pL~~~pNvilTPHiag~t~~~~~r~~~--~~~~nl~~~~~G~~~~~~~~i  375 (386)
T PLN03139        324 PKDHPWRYMPNHAMTPHISGTTIDAQLRYAA--GVKDMLDRYFKGEDFPAQNYI  375 (386)
T ss_pred             CCCChhhcCCCeEEcccccccCHHHHHHHHH--HHHHHHHHHHcCCCCCCccee
Confidence            9999999999999999999999999999999  999999999999987665543

>PRK06487 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=2.5e-52  Score=371.47  Aligned_cols=203  Identities=28%  Similarity=0.445  Sum_probs=183.5

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcc----cccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGV----AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK   76 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~----~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~   76 (240)
                      ++||+++|++...++.+++|.|.....    ...+.+|.||++||||+|+||+.+|+++++|||+|++||+.... .   
T Consensus       109 ~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~---  184 (317)
T PRK06487        109 ALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP-A---  184 (317)
T ss_pred             HHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc-c---
Confidence            479999999999999999999974321    11246899999999999999999999999999999999985321 1   


Q ss_pred             hcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCC
Q 026360           77 ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (240)
Q Consensus        77 ~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~  156 (240)
                        .... .++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|.||+||||+
T Consensus       185 --~~~~-~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~  261 (317)
T PRK06487        185 --RPDR-LPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLS  261 (317)
T ss_pred             --cccc-cCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCC
Confidence              1223 3899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCC--CCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCCCCCc
Q 026360          157 PQPAPKDHPWRY--MPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSNSELK  212 (240)
Q Consensus       157 ~EP~~~~~~l~~--~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~  212 (240)
                      +||++.++|||.  +|||++|||+||+|.++..++..  .+.+|+.+|++|++++.+|
T Consensus       262 ~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~~~~~~--~~~~ni~~~~~g~~~~~v~  317 (317)
T PRK06487        262 VEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVG--QLAENARAFFAGKPLRVVS  317 (317)
T ss_pred             CCCCCCCCchhhcCCCCEEECCccccCCHHHHHHHHH--HHHHHHHHHHcCCCCcCCC
Confidence            999999999995  89999999999999999999999  9999999999998876553

>PRK07574 formate dehydrogenase; Provisional

Probab=100.00  E-value=4.5e-52  Score=376.73  Aligned_cols=210  Identities=47%  Similarity=0.861  Sum_probs=192.2

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      ++||++.|++...++.+++|.|........+++|.|++|||||+|+||+.+|++|++|||+|++||++..+.+.....|+
T Consensus       157 ~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~  236 (385)
T PRK07574        157 MMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGL  236 (385)
T ss_pred             HHHHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCc
Confidence            58999999999999999999997543222467899999999999999999999999999999999997644444455677


Q ss_pred             eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (240)
Q Consensus        81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  160 (240)
                      ....++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||++||++||++||++|+|.||++|||++||+
T Consensus       237 ~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPl  316 (385)
T PRK07574        237 TYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPA  316 (385)
T ss_pred             eecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCC
Confidence            66669999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCCCCCc
Q 026360          161 PKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSNSELK  212 (240)
Q Consensus       161 ~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~  212 (240)
                      |.+||||.+||+++|||+||+|.++++++..  .+.+|+.+|++|+++....
T Consensus       317 p~d~pL~~~pNvilTPHiag~T~e~~~~~~~--~~~~ni~~~~~G~~~~~~~  366 (385)
T PRK07574        317 PADHPWRTMPRNGMTPHISGTTLSAQARYAA--GTREILECFFEGRPIRDEY  366 (385)
T ss_pred             CCCChHHhCCCeEECCccccCcHHHHHHHHH--HHHHHHHHHHcCCCCCCCc
Confidence            9999999999999999999999999999999  9999999999998775443

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=100.00  E-value=6.4e-52  Score=368.00  Aligned_cols=199  Identities=23%  Similarity=0.365  Sum_probs=180.4

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCccc----ccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVA----YRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK   76 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~----~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~   76 (240)
                      +|||+++|++...++.+++|.|......    ..+++|.||++||||+|+||+.+|+++++|||+|++||++....    
T Consensus       106 ~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----  181 (311)
T PRK08410        106 AMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK----  181 (311)
T ss_pred             HHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----
Confidence            5899999999999999999999743211    12468999999999999999999999999999999999864221    


Q ss_pred             hcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCC
Q 026360           77 ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (240)
Q Consensus        77 ~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~  156 (240)
                      ..++... ++++++++||+|++|+|+|++|+++|+++.|++||||++|||+|||++||++||++||++|+|. |+||||+
T Consensus       182 ~~~~~~~-~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~  259 (311)
T PRK08410        182 NEEYERV-SLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLE  259 (311)
T ss_pred             ccCceee-cHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCC
Confidence            2244444 8999999999999999999999999999999999999999999999999999999999999999 9999999


Q ss_pred             CCCCCCCCCCCCC---CCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCC
Q 026360          157 PQPAPKDHPWRYM---PNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKS  207 (240)
Q Consensus       157 ~EP~~~~~~l~~~---~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~  207 (240)
                      +||++.++|||.+   |||++|||+||+|.++..++..  .+.+|+.+|++|++
T Consensus       260 ~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e~~~~~~~--~~~~nl~~~~~g~~  311 (311)
T PRK08410        260 KEPMEKNHPLLSIKNKEKLLITPHIAWASKEARKTLIE--KVKENIKDFLEGGK  311 (311)
T ss_pred             CCCCCCCChhhccCCCCCEEECCccccCCHHHHHHHHH--HHHHHHHHHHcCCC
Confidence            9999999999987   8999999999999999999999  89999999999863

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.5e-51  Score=377.39  Aligned_cols=225  Identities=27%  Similarity=0.468  Sum_probs=200.8

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      ++||+++|++..+++.+++|.|....  ..+.+|.||++||||+|+||+.+|+++++|||+|++||+++...    ..++
T Consensus       118 ~l~L~~~R~~~~~~~~~~~g~w~~~~--~~~~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----~~~~  191 (409)
T PRK11790        118 GEIILLLRGIPEKNAKAHRGGWNKSA--AGSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----LGNA  191 (409)
T ss_pred             HHHHHHHcChHHHHHHHHcCcccccc--cCcccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----cCCc
Confidence            57999999999999999999997542  24678999999999999999999999999999999999854211    1234


Q ss_pred             eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (240)
Q Consensus        81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  160 (240)
                      ....++++++++||+|++|+|+|++|+++++++.|++||+|++|||+|||++||++||+++|++|+|.||+||||++||+
T Consensus       192 ~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~  271 (409)
T PRK11790        192 RQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPK  271 (409)
T ss_pred             eecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCC
Confidence            55569999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC----CCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC-CCCccchhhhc---ccceeEeeeCCcc
Q 026360          161 PK----DHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN-SELKYCSYAML---RESRICLTDTSRE  232 (240)
Q Consensus       161 ~~----~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v~~~~~~~~---~~~r~~~~~~~~~  232 (240)
                      +.    ++|||.+|||++|||+||+|.++..++..  .+.+|+.+|++|+++ +.||++...+-   ..||+++.|.+..
T Consensus       272 ~~~~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~--~~~~nl~~~~~~~~~~~~vn~~~~~~~~~~~~~rlii~h~d~p  349 (409)
T PRK11790        272 SNGDPFESPLRGLDNVILTPHIGGSTQEAQENIGL--EVAGKLVKYSDNGSTLSAVNFPEVSLPEHPGGHRLLHIHENRP  349 (409)
T ss_pred             CccccccchhhcCCCEEECCcCCCCHHHHHHHHHH--HHHHHHHHHHcCCCcCcceeccccccCCCCCCceEEEEeCCCC
Confidence            76    47999999999999999999999999999  899999999998766 88888765553   2699999987654


Q ss_pred             e
Q 026360          233 K  233 (240)
Q Consensus       233 ~  233 (240)
                      .
T Consensus       350 G  350 (409)
T PRK11790        350 G  350 (409)
T ss_pred             C
Confidence            3

>PRK06932 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=7.2e-51  Score=361.60  Aligned_cols=199  Identities=26%  Similarity=0.426  Sum_probs=178.8

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcc----cccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGV----AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK   76 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~----~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~   76 (240)
                      ++||+++|++...++.+++|.|.....    ...+.+|.||++||||+|.||+.+|+++++|||+|++||+.... .   
T Consensus       108 ~l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~-~---  183 (314)
T PRK06932        108 GMIFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS-V---  183 (314)
T ss_pred             HHHHHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc-c---
Confidence            479999999999999999999964311    11346899999999999999999999999999999999975321 1   


Q ss_pred             hcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCC
Q 026360           77 ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (240)
Q Consensus        77 ~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~  156 (240)
                       .... ..++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|.||+||||+
T Consensus       184 -~~~~-~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~  261 (314)
T PRK06932        184 -CREG-YTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLV  261 (314)
T ss_pred             -cccc-cCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCC
Confidence             1112 34899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCC----CCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCC
Q 026360          157 PQPAPKDHPWR----YMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKS  207 (240)
Q Consensus       157 ~EP~~~~~~l~----~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~  207 (240)
                      +||++.++|||    .+|||++|||+||+|.++.+++..  .+.+|+.+|++|++
T Consensus       262 ~EP~~~~~pl~~~~~~~pnvilTPHia~~t~e~~~~~~~--~~~~ni~~~~~~g~  314 (314)
T PRK06932        262 KEPPEKDNPLIQAAKRLPNLLITPHIAWASDSAVTTLVN--KVAQNIEEFVQQGK  314 (314)
T ss_pred             CCCCCCCChhhHhhcCCCCEEECCccccCcHHHHHHHHH--HHHHHHHHHHhcCC
Confidence            99999999998    489999999999999999999999  99999999998763

>PLN02928 oxidoreductase family protein

Probab=100.00  E-value=2e-50  Score=363.12  Aligned_cols=206  Identities=30%  Similarity=0.378  Sum_probs=185.0

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH----
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK----   76 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~----   76 (240)
                      ++||++.|++....+.+++|.|...    .+.+|.|+++||||+|.||+.+|++|++|||+|++||++........    
T Consensus       128 ~l~L~~~R~~~~~~~~~~~~~w~~~----~~~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~  203 (347)
T PLN02928        128 YLMLGLLRKQNEMQISLKARRLGEP----IGDTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIP  203 (347)
T ss_pred             HHHHHHHhCHHHHHHHHHcCCcccc----cccCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccc
Confidence            4799999999999999999999642    35689999999999999999999999999999999998642211110    


Q ss_pred             -----h---cCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360           77 -----E---TGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus        77 -----~---~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                           .   .+. ...++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|.
T Consensus       204 ~~~~~~~~~~~~-~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~  282 (347)
T PLN02928        204 NGDVDDLVDEKG-GHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLG  282 (347)
T ss_pred             cccccccccccC-cccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence                 0   012 2458999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeCCCCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCCCCCcc
Q 026360          149 GYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSNSELKY  213 (240)
Q Consensus       149 ga~lDV~~~EP~~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~  213 (240)
                      ||+||||++||++.++|||.+|||++|||+||+|.++.+++..  .+.+|+.+|++|+++..+.+
T Consensus       283 gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~~~~~~~~~--~~~~nl~~~~~g~~~~~~~~  345 (347)
T PLN02928        283 GLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEYSYRSMGK--IVGDAALQLHAGRPLTGIEF  345 (347)
T ss_pred             EEEEccCCCCCCCCCChhhcCCCEEECCcCCCChHHHHHHHHH--HHHHHHHHHHCCCCCCceee
Confidence            9999999999999999999999999999999999999999999  89999999999998876654

>PRK13243 glyoxylate reductase; Reviewed

Probab=100.00  E-value=3.7e-50  Score=359.79  Aligned_cols=208  Identities=32%  Similarity=0.547  Sum_probs=187.0

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcc-----cccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHH
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGV-----AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE   75 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~-----~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~   75 (240)
                      ++||++.|++..+++.+++|.|.....     ...+.+|.|++|||||+|.||+.+|++|++||++|++||+++.. ...
T Consensus       110 ~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~  188 (333)
T PRK13243        110 ALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKP-EAE  188 (333)
T ss_pred             HHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCCh-hhH
Confidence            479999999999999999999974210     11357899999999999999999999999999999999987533 233


Q ss_pred             HhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCC
Q 026360           76 KETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (240)
Q Consensus        76 ~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~  155 (240)
                      ...++.. .++++++++||+|++|+|++++|+++++++.|+.||+|+++||+|||++||+++|+++|++|+|.||+||||
T Consensus       189 ~~~~~~~-~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~  267 (333)
T PRK13243        189 KELGAEY-RPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVF  267 (333)
T ss_pred             HHcCCEe-cCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccC
Confidence            3456554 489999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC-CCCcc
Q 026360          156 NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN-SELKY  213 (240)
Q Consensus       156 ~~EP~~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v~~  213 (240)
                      ++||++ ++|||.+|||++|||+||+|.++..++..  .+.+|+.+|++|+++ +.|+.
T Consensus       268 ~~EP~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~--~~~~ni~~~~~g~~~~~~v~~  323 (333)
T PRK13243        268 EEEPYY-NEELFSLKNVVLAPHIGSATFEAREGMAE--LVAENLIAFKRGEVPPTLVNR  323 (333)
T ss_pred             CCCCCC-CchhhcCCCEEECCcCCcCHHHHHHHHHH--HHHHHHHHHHcCCCCCcccCH
Confidence            999987 89999999999999999999999999999  899999999999865 66654

>PLN02306 hydroxypyruvate reductase

Probab=100.00  E-value=5.2e-50  Score=363.87  Aligned_cols=227  Identities=20%  Similarity=0.269  Sum_probs=191.1

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCcc-CcccccccccCCCeEEEEccChHHHHHHHHhc-cCCCEEEEEcCCCCChhH--HH
Q 026360            1 MRILILVRNFLPGHHQVISGEWNV-AGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQL--EK   76 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~-~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~-~~G~~V~~~d~~~~~~~~--~~   76 (240)
                      +|||++.|++..+++.+++|.|.. ......+.+|.|++|||||+|.||+.+|++++ +|||+|++||++......  ..
T Consensus       129 ~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~  208 (386)
T PLN02306        129 SLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVT  208 (386)
T ss_pred             HHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhh
Confidence            589999999999999999999852 21112367899999999999999999999985 999999999986532111  01


Q ss_pred             hcC------------ceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360           77 ETG------------AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (240)
Q Consensus        77 ~~g------------~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~  144 (240)
                      ..+            +....++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||++||++
T Consensus       209 ~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~s  288 (386)
T PLN02306        209 AYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKA  288 (386)
T ss_pred             hhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHh
Confidence            111            22235899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccEEEeeCCCCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC-CCCccch-----hhh
Q 026360          145 GHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN-SELKYCS-----YAM  218 (240)
Q Consensus       145 g~i~ga~lDV~~~EP~~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v~~~~-----~~~  218 (240)
                      |++.||+||||++||++ ++|||++|||++|||+||+|.++.+++..  .+.+|+.+|++|+++ +.||...     .+-
T Consensus       289 g~i~gAaLDVf~~EP~~-~~~L~~~pNVilTPHiag~T~e~~~~~~~--~~~~ni~~~~~g~~~~~~~~~~~~~~~~~~~  365 (386)
T PLN02306        289 NPMFRVGLDVFEDEPYM-KPGLADMKNAVVVPHIASASKWTREGMAT--LAALNVLGKLKGYPVWGDPNRVEPFLNENAP  365 (386)
T ss_pred             CCeeEEEEeCCCCCCCC-cchHhhCCCEEECCccccCcHHHHHHHHH--HHHHHHHHHHcCCCCcccccchhhcccccCC
Confidence            99999999999999975 57899999999999999999999999999  899999999999877 7777432     111


Q ss_pred             cccceeEeeeCC
Q 026360          219 LRESRICLTDTS  230 (240)
Q Consensus       219 ~~~~r~~~~~~~  230 (240)
                      -.--|.|+++.+
T Consensus       366 ~~~~~~~~~~~~  377 (386)
T PLN02306        366 PPAASPSIVNAK  377 (386)
T ss_pred             CCcCCcceechh
Confidence            113677777654

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=100.00  E-value=1.1e-50  Score=333.60  Aligned_cols=177  Identities=39%  Similarity=0.673  Sum_probs=155.0

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      +|||++.|++..+++.+++|.|.. .....++++.|++|||||+|+||+.+|+++++|||+|++||++......+...++
T Consensus         2 ~l~L~~~R~~~~~~~~~~~~~W~~-~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~   80 (178)
T PF02826_consen    2 ALMLALLRRLPEYHEAQRNGEWAS-RERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV   80 (178)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTBHHH-HTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE
T ss_pred             hHHHHHHhCHHHHHHHHHcCCCCC-CcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc
Confidence            589999999999999999999921 1123577999999999999999999999999999999999997644333555666


Q ss_pred             eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (240)
Q Consensus        81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  160 (240)
                      .. .++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|++.||+||||++||+
T Consensus        81 ~~-~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~  159 (178)
T PF02826_consen   81 EY-VSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEPL  159 (178)
T ss_dssp             EE-SSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSS
T ss_pred             ee-eehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCCC
Confidence            55 49999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCeEEcCCCC
Q 026360          161 PKDHPWRYMPNQAMTPHVS  179 (240)
Q Consensus       161 ~~~~~l~~~~nv~~TPH~a  179 (240)
                      +.++|||++||+++|||+|
T Consensus       160 ~~~~~l~~~~nvi~TPH~a  178 (178)
T PF02826_consen  160 PADSPLWDLPNVILTPHIA  178 (178)
T ss_dssp             STTHHHHTSTTEEEESS-T
T ss_pred             CCCChHHcCCCEEEeCccC
Confidence            9999999999999999986

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=100.00  E-value=4e-49  Score=349.90  Aligned_cols=202  Identities=23%  Similarity=0.337  Sum_probs=178.5

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      ++||++.|++....+.+++|.|...    ...++.|+||||||+|.||+.+|++|++|||+|++||++..........  
T Consensus       105 ~~~L~~~r~~~~~~~~~~~~~w~~~----~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~--  178 (312)
T PRK15469        105 SQVLHWFRRFDDYQALQNSSHWQPL----PEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSF--  178 (312)
T ss_pred             HHHHHHHcChHHHHHHHHhCCcCCC----CCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceee--
Confidence            4799999999999999999999743    2457999999999999999999999999999999999865332211111  


Q ss_pred             eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (240)
Q Consensus        81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  160 (240)
                      ....++++++++||+|++|+|+|++|+++++++.|++||+|++|||+|||++||++||++||++|++.||+||||++||+
T Consensus       179 ~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl  258 (312)
T PRK15469        179 AGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPL  258 (312)
T ss_pred             cccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCC
Confidence            12358999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC-CCCc
Q 026360          161 PKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN-SELK  212 (240)
Q Consensus       161 ~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v~  212 (240)
                      |.++|||.+|||++|||+||+|.+.  ++..  .+.+|+++|.+|+++ +.|+
T Consensus       259 ~~~~pl~~~~nvi~TPHiag~t~~~--~~~~--~~~~n~~~~~~g~~~~~~V~  307 (312)
T PRK15469        259 PPESPLWQHPRVAITPHVAAVTRPA--EAVE--YISRTIAQLEKGERVCGQVD  307 (312)
T ss_pred             CCCChhhcCCCeEECCcCCCCcCHH--HHHH--HHHHHHHHHHcCCCCcccCC
Confidence            9999999999999999999999875  3555  788999999999976 5454

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=100.00  E-value=6.6e-49  Score=370.37  Aligned_cols=209  Identities=33%  Similarity=0.538  Sum_probs=190.9

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      +|||+++|+++.+++.+++|.|....  ..+.+|.||+|||||+|+||+.+|++|++|||+|++||++. ..+.....|+
T Consensus       105 ~l~L~~~R~~~~~~~~~~~g~W~~~~--~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~-~~~~~~~~g~  181 (525)
T TIGR01327       105 AMLLAAARNIPQADASLKEGEWDRKA--FMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYI-SPERAEQLGV  181 (525)
T ss_pred             HHHHHHhcCHHHHHHHHHcCCccccc--cCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC-ChhHHHhcCC
Confidence            58999999999999999999997532  24678999999999999999999999999999999999863 3344555677


Q ss_pred             eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (240)
Q Consensus        81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  160 (240)
                      ...+++++++++||+|++|+|++++|+++++++.|+.||+|+++||+|||++||++||++||++|+|.||+||||++||+
T Consensus       182 ~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~  261 (525)
T TIGR01327       182 ELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPP  261 (525)
T ss_pred             EEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCC
Confidence            76668999999999999999999999999999999999999999999999999999999999999999999999999995


Q ss_pred             CCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC-CCCccch
Q 026360          161 PKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN-SELKYCS  215 (240)
Q Consensus       161 ~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v~~~~  215 (240)
                       .++|||.+|||++|||+||+|.+++.++..  .+.+|+.+|++|+++ +.||.+.
T Consensus       262 -~~~pL~~~~nvi~TPHia~~t~e~~~~~~~--~~~~ni~~~~~g~~~~~~vn~~~  314 (525)
T TIGR01327       262 -TDNPLFDLDNVIATPHLGASTREAQENVAT--QVAEQVLDALKGLPVPNAVNAPG  314 (525)
T ss_pred             -CCChhhcCCCeEECCCccccHHHHHHHHHH--HHHHHHHHHHcCCCCCceeeCCC
Confidence             589999999999999999999999999999  999999999999865 7777653

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=100.00  E-value=1.7e-49  Score=344.55  Aligned_cols=209  Identities=31%  Similarity=0.502  Sum_probs=194.6

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      ++|++++|+++++...+++|+|++..+  .+.+|.|||+||+|+|+||+.+|++++.+||+|++||+-. +.+.+...|+
T Consensus       113 gli~SLaR~i~~A~~s~k~g~wnr~~~--~G~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~-~~~~~~a~gv  189 (406)
T KOG0068|consen  113 GLILSLARQIGQASASMKEGKWNRVKY--LGWELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPIT-PMALAEAFGV  189 (406)
T ss_pred             HHHHHHhhhcchhheeeecCceeecce--eeeEEeccEEEEeecccchHHHHHHHHhcCceEEeecCCC-chHHHHhccc
Confidence            479999999999999999999987653  5889999999999999999999999999999999999854 5667777899


Q ss_pred             eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (240)
Q Consensus        81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  160 (240)
                      +.+ +++|++..||+|.+|+|++|+|+++++.+.|++||+|..+||++||++||++||++||++|++.||++|||+.||+
T Consensus       190 q~v-sl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp  268 (406)
T KOG0068|consen  190 QLV-SLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPP  268 (406)
T ss_pred             eee-eHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCC
Confidence            877 9999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             CC--CCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCCCCCccch
Q 026360          161 PK--DHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSNSELKYCS  215 (240)
Q Consensus       161 ~~--~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~  215 (240)
                      ..  ++.|.++|||++|||+|++|.|++.+.+.  .+.+++..|.+|.....||.+.
T Consensus       269 ~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~iai--evaea~~~~~~~~~~g~Vna~~  323 (406)
T KOG0068|consen  269 KNGWDSELVSHPNVIVTPHLGASTEEAQSRIAI--EVAEAVSDYINGNSAGSVNAPE  323 (406)
T ss_pred             ccchhHHHhcCCceeecCccccchHHHHHHHHH--HHHHHHHHHhccCccceechhh
Confidence            75  78899999999999999999999999999  9999999999996557777654

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=4e-48  Score=365.10  Aligned_cols=207  Identities=33%  Similarity=0.551  Sum_probs=190.0

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      +|||+++|+++.+++.+++|.|....  ..+.+|.||+|||||+|+||+.+|+++++|||+|++||++. ..+.....|+
T Consensus       107 ~l~L~~~R~~~~~~~~~~~g~W~~~~--~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~-~~~~~~~~g~  183 (526)
T PRK13581        107 ALMLALARNIPQAHASLKAGKWERKK--FMGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYI-SPERAAQLGV  183 (526)
T ss_pred             HHHHHHHcCHHHHHHHHHcCCCCccC--ccccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC-ChhHHHhcCC
Confidence            58999999999999999999997532  24678999999999999999999999999999999999864 3344455677


Q ss_pred             eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (240)
Q Consensus        81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  160 (240)
                      ... ++++++++||+|++|+|++++|+++++++.|+.||+|+++||+|||++||++||++||++|+|.||+||||++||+
T Consensus       184 ~~~-~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~  262 (526)
T PRK13581        184 ELV-SLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPP  262 (526)
T ss_pred             EEE-cHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCC
Confidence            766 8999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             CCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC-CCCccc
Q 026360          161 PKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN-SELKYC  214 (240)
Q Consensus       161 ~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v~~~  214 (240)
                      + ++|||.+|||++|||+||+|.+++.++..  .+.+|+.+|++|+++ +.||.+
T Consensus       263 ~-~~pL~~~~nvilTPHia~~t~e~~~~~~~--~~~~ni~~~~~g~~~~~~vn~~  314 (526)
T PRK13581        263 T-DSPLFELPNVVVTPHLGASTAEAQENVAI--QVAEQVIDALRGGPVPNAVNLP  314 (526)
T ss_pred             C-CchhhcCCCeeEcCccccchHHHHHHHHH--HHHHHHHHHHcCCCcCceeeCC
Confidence            6 89999999999999999999999999999  899999999999866 677755

>PRK06436 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=2.3e-47  Score=337.08  Aligned_cols=201  Identities=22%  Similarity=0.386  Sum_probs=180.3

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      +|||+++|++...++.+++|.|...    .+.+|.|++|||||+|+||+.+|+++++||++|++||++....      ++
T Consensus        91 ~l~L~l~R~i~~~~~~~~~g~w~~~----~~~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~------~~  160 (303)
T PRK06436         91 ALLLAWAKNICENNYNMKNGNFKQS----PTKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVND------GI  160 (303)
T ss_pred             HHHHHHHcChHHHHHHHHcCCCCCC----CCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCccc------Cc
Confidence            5899999999999999999999753    2468999999999999999999999999999999999864321      22


Q ss_pred             e-ecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 026360           81 K-FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (240)
Q Consensus        81 ~-~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP  159 (240)
                      . ...++++++++||+|++|+|++++|+++++++.|+.||+|+++||+|||+++|+++|+++|++|++.||+||||++||
T Consensus       161 ~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP  240 (303)
T PRK06436        161 SSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEP  240 (303)
T ss_pred             ccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCC
Confidence            2 135899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCeEEcCCCC-CCcHHHHHHhhhhHHHHHHHHHHHccCCCCCCccchh
Q 026360          160 APKDHPWRYMPNQAMTPHVS-GTTIDAQVIVHFFPVFMRLFTSFLSHKSNSELKYCSY  216 (240)
Q Consensus       160 ~~~~~~l~~~~nv~~TPH~a-~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~  216 (240)
                      ++.++   .+||+++|||++ ++|.++.+++..  .+.+|+.+|++|++.+.|+...|
T Consensus       241 ~~~~~---~~~nviiTPHi~g~~t~e~~~~~~~--~~~~ni~~~~~g~~~~~V~~~~y  293 (303)
T PRK06436        241 IITET---NPDNVILSPHVAGGMSGEIMQPAVA--LAFENIKNFFEGKPKNIVRKEEY  293 (303)
T ss_pred             CCccC---CCCCEEECCccccccCHHHHHHHHH--HHHHHHHHHHcCCCCceEchHHh
Confidence            88776   579999999986 588999999888  89999999999988777765444

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=100.00  E-value=2.4e-47  Score=336.58  Aligned_cols=207  Identities=42%  Similarity=0.719  Sum_probs=191.7

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      +++|.+.|++..+++++++|.|.+......+..+.||||||+|+|+||+.+|++|++||+.+.+++|++...+.+.+.+.
T Consensus       127 ~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~  206 (336)
T KOG0069|consen  127 SLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYA  206 (336)
T ss_pred             HHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcc
Confidence            46899999999999999999995544445678899999999999999999999999999888888888777777777666


Q ss_pred             eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (240)
Q Consensus        81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  160 (240)
                      +.. ++++++.+||+|++|+|+|++|++++|++.+..||+|++|||++||.++|++++++||++|+|.+++||||++|| 
T Consensus       207 ~~~-d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP-  284 (336)
T KOG0069|consen  207 EFV-DIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEP-  284 (336)
T ss_pred             ccc-CHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCC-
Confidence            644 999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC-CCC
Q 026360          161 PKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN-SEL  211 (240)
Q Consensus       161 ~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v  211 (240)
                      +.++||+.++|+++|||+|++|.+++.+++.  .+..|+.+++.|+++ +++
T Consensus       285 ~~~~~l~~~dnvv~~PHigs~t~~t~~~m~~--~v~~n~~~~~~g~~~~~~~  334 (336)
T KOG0069|consen  285 PVDHPLLTLDNVVILPHIGSATLETREKMAE--IVLNNLLAFFSGKPLLTPV  334 (336)
T ss_pred             CCCcchhcccceeEecccccCcHHHHHHHHH--HHHHHHHHHHccCCCCCcC
Confidence            8899999999999999999999999999999  999999999999987 444

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=100.00  E-value=6.7e-47  Score=338.12  Aligned_cols=205  Identities=20%  Similarity=0.265  Sum_probs=180.6

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      ++||++.|++..+++.+++|.|.+... ..+.+|.|++|||||+|.||+.+|+.|+++|++|++||+++.....    ..
T Consensus       112 ~l~L~~~R~~~~~~~~~~~~~~~w~~~-~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~----~~  186 (330)
T PRK12480        112 SIALQLVRRFPDIERRVQAHDFTWQAE-IMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLD----FL  186 (330)
T ss_pred             HHHHHHHHhHHHHHHHHHhCCcccccc-cCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhh----hh
Confidence            579999999999999999998754321 2357899999999999999999999999999999999987532211    12


Q ss_pred             eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (240)
Q Consensus        81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  160 (240)
                      ....++++++++||+|++|+|++++|.++++++.++.||+|++|||+|||++||++||+++|++|++.||+||||++||+
T Consensus       187 ~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~  266 (330)
T PRK12480        187 TYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAA  266 (330)
T ss_pred             hccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCc
Confidence            33458999999999999999999999999999999999999999999999999999999999999999999999999996


Q ss_pred             C-------------CCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC-CCCc
Q 026360          161 P-------------KDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN-SELK  212 (240)
Q Consensus       161 ~-------------~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v~  212 (240)
                      +             ..+|||.+|||++|||+||+|.++..++..  .+.+|+.+|++|+.. +.||
T Consensus       267 ~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~~~~~~~~~--~~~~n~~~~~~~~~~~~~~~  330 (330)
T PRK12480        267 YFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDEAVQNLVE--GGLNAALSVINTGTCETRLN  330 (330)
T ss_pred             cccccccccccCchhhHHHhcCCCEEECCcccccHHHHHHHHHH--HHHHHHHHHHhCCCCcccCC
Confidence            2             124799999999999999999999999999  999999999998865 4443

>PRK08605 D-lactate dehydrogenase; Validated

Probab=100.00  E-value=6.6e-45  Score=325.80  Aligned_cols=205  Identities=22%  Similarity=0.323  Sum_probs=180.6

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHh-ccCCCEEEEEcCCCCChhHHHhcC
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRL-KPFNCNLLYHDRVKMDPQLEKETG   79 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l-~~~G~~V~~~d~~~~~~~~~~~~g   79 (240)
                      ++||++.|++...++.+++|.|.+... ..+++|.|++|||||+|.||+.+|+.| +++|++|++||++....  .. .+
T Consensus       112 ~~~l~~~R~~~~~~~~~~~~~~~~~~~-~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~--~~-~~  187 (332)
T PRK08605        112 TQAINLVRHFNQIQTKVREHDFRWEPP-ILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAK--AA-TY  187 (332)
T ss_pred             HHHHHHhcChHHHHHHHHhCCcccccc-cccceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHh--HH-hh
Confidence            479999999999999999998854321 236789999999999999999999999 78999999999865322  11 13


Q ss_pred             ceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 026360           80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (240)
Q Consensus        80 ~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP  159 (240)
                      +....++++++++||+|++|+|+++.|+++++.+.++.||+|++|||+|||.++|+++|.++|++|+|.||+||||+.||
T Consensus       188 ~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep  267 (332)
T PRK08605        188 VDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFER  267 (332)
T ss_pred             ccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCC
Confidence            44456899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             --CCCCC-----------CCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC-CCC
Q 026360          160 --APKDH-----------PWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN-SEL  211 (240)
Q Consensus       160 --~~~~~-----------~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v  211 (240)
                        +|.++           +||.+|||++|||+||+|.|+.+++..  .+.+|+.+|++|++. +.+
T Consensus       268 ~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~~~~~~~--~~~~n~~~~~~g~~~~~~~  331 (332)
T PRK08605        268 PLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDAAVKNLIV--DALDATLEVLQTGTTRLRV  331 (332)
T ss_pred             CccccccccccccchhhHHHhcCCCEEECCcccccHHHHHHHHHH--HHHHHHHHHHcCCCCCCCc
Confidence              35554           499999999999999999999999999  899999999999765 443

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=100.00  E-value=1.4e-41  Score=307.13  Aligned_cols=168  Identities=26%  Similarity=0.464  Sum_probs=149.2

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChh----h
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK----T  106 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~----t  106 (240)
                      +.+|.|++|||||+|+||+.+|++|++|||+|++||+.....    ..... ..++++++++||+|++|+|+|++    |
T Consensus       111 g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~----~~~~~-~~~L~ell~~sDiI~lh~PLt~~g~~~T  185 (378)
T PRK15438        111 GFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR----GDEGD-FRSLDELVQEADILTFHTPLFKDGPYKT  185 (378)
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc----ccccc-cCCHHHHHhhCCEEEEeCCCCCCccccc
Confidence            347899999999999999999999999999999999743211    11122 35899999999999999999996    9


Q ss_pred             hhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCCCCCCCeEEcCCCCCCcHHHH
Q 026360          107 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQ  186 (240)
Q Consensus       107 ~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nv~~TPH~a~~t~~~~  186 (240)
                      .++++++.|+.||+|+++||+|||++||++||+++|++|++.||+||||++||. .+++|+..++ ++|||+||+|.|+.
T Consensus       186 ~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~-~~~~Ll~~~~-i~TPHiAg~s~e~~  263 (378)
T PRK15438        186 LHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPE-LNVELLKKVD-IGTPHIAGYTLEGK  263 (378)
T ss_pred             ccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCC-CchhhhhcCC-EECCccCcCcHHHH
Confidence            999999999999999999999999999999999999999999999999999996 4667887665 99999999999999


Q ss_pred             HHhhhhHHHHHHHHHHHccCCC
Q 026360          187 VIVHFFPVFMRLFTSFLSHKSN  208 (240)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~g~~~  208 (240)
                      .+...  .+.+|+.+|+ |.+.
T Consensus       264 ~~~~~--~~~~~l~~~~-~~~~  282 (378)
T PRK15438        264 ARGTT--QVFEAYSKFI-GHEQ  282 (378)
T ss_pred             HHHHH--HHHHHHHHHH-cCcc
Confidence            99988  8999999998 5443

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=100.00  E-value=2.1e-41  Score=306.71  Aligned_cols=168  Identities=29%  Similarity=0.493  Sum_probs=152.0

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCCh----hh
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE----KT  106 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~----~t  106 (240)
                      +.++.|++|||||+|+||+.+|++++++|++|++||+.....    . +.....++++++++||+|++|+|+|+    .|
T Consensus       111 g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~----~-~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T  185 (381)
T PRK00257        111 GVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA----E-GDGDFVSLERILEECDVISLHTPLTKEGEHPT  185 (381)
T ss_pred             CCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc----c-cCccccCHHHHHhhCCEEEEeCcCCCCccccc
Confidence            457999999999999999999999999999999999853211    1 21223589999999999999999998    59


Q ss_pred             hhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCCCCCCCeEEcCCCCCCcHHHH
Q 026360          107 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQ  186 (240)
Q Consensus       107 ~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nv~~TPH~a~~t~~~~  186 (240)
                      +++++++.|+.||+|++|||+|||++||++||+++|++|++.+|+||||++||. .++|||.. |+++|||+||+|.|+.
T Consensus       186 ~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~-~~~~L~~~-nvi~TPHiAg~s~e~~  263 (381)
T PRK00257        186 RHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQ-IDLELADL-CTIATPHIAGYSLDGK  263 (381)
T ss_pred             cccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCC-CChhhhhC-CEEEcCccccCCHHHH
Confidence            999999999999999999999999999999999999999999999999999995 56789885 9999999999999999


Q ss_pred             HHhhhhHHHHHHHHHHHccCC
Q 026360          187 VIVHFFPVFMRLFTSFLSHKS  207 (240)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~g~~  207 (240)
                      .+...  .+.+|+.+|+.+.+
T Consensus       264 ~r~~~--~~~~nl~~~~~~~~  282 (381)
T PRK00257        264 ARGTA--QIYQALCRFFGIPA  282 (381)
T ss_pred             HHHHH--HHHHHHHHHHcCCC
Confidence            99998  89999999998864

>KOG0067 consensus Transcription factor CtBP [Transcription]

Probab=99.89  E-value=2.5e-23  Score=183.25  Aligned_cols=203  Identities=26%  Similarity=0.357  Sum_probs=171.1

Q ss_pred             cHHHHHhCChHHHHHHHcCCCccCcc-----cccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH
Q 026360            2 RILILVRNFLPGHHQVISGEWNVAGV-----AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK   76 (240)
Q Consensus         2 ~~l~~~R~~~~~~~~~~~g~w~~~~~-----~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~   76 (240)
                      .+|.+.|+-.+.++..++|.|.....     ......++|.+.|++|+|+.|++++.++++||..|+.||+.- ..-..+
T Consensus       139 hIl~l~rrntw~cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~-~~g~~~  217 (435)
T KOG0067|consen  139 HILNLYRRNTWLCQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYL-IDGIDK  217 (435)
T ss_pred             HHHhhhcccchhhhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchh-hhhhhh
Confidence            36789999999999999999853211     112345789999999999999999999999999999999853 333445


Q ss_pred             hcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCC
Q 026360           77 ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (240)
Q Consensus        77 ~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~  156 (240)
                      .+|...+.++++++.++|.+++|+.+++.+.++++.-.+++|+.|+.++|++||.++|+++|.++|+.|++.+++     
T Consensus       218 ~lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa-----  292 (435)
T KOG0067|consen  218 SLGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA-----  292 (435)
T ss_pred             hcccceecccchhhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhhccCceeccc-----
Confidence            677777778999999999999999999999999999999999999999999999999999999999999999887     


Q ss_pred             CCCC-CCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCCCCCccc
Q 026360          157 PQPA-PKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSNSELKYC  214 (240)
Q Consensus       157 ~EP~-~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~  214 (240)
                        |. -...|+-+.||.++|||.++++..+...+..  .....+++-+.|.......+|
T Consensus       293 --~~~~~~~~l~d~pn~ic~~~ta~~~e~~~~e~re--~aa~eiR~ai~g~ip~~l~~c  347 (435)
T KOG0067|consen  293 --PRSFKQGPLKDAPNLICTPHTAWYSEAASVELRE--VAALEIRRAITGRIPDSLRNC  347 (435)
T ss_pred             --CcccccccccCCCCCCCCcccchhhHHHHHHHHH--HHhhhhhhccCCCCchhHHHH
Confidence              22 2346788899999999999999998877777  666678888888766555544

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=99.77  E-value=3.6e-18  Score=157.75  Aligned_cols=119  Identities=19%  Similarity=0.262  Sum_probs=102.4

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~  111 (240)
                      ..+.|++++|+|+|.||+.+|++++++|++|+++++++.....+...|+... +++++++.+|+|++|+.    +.++++
T Consensus       250 ~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~-~leell~~ADIVI~atG----t~~iI~  324 (476)
T PTZ00075        250 VMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVV-TLEDVVETADIFVTATG----NKDIIT  324 (476)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceec-cHHHHHhcCCEEEECCC----cccccC
Confidence            4689999999999999999999999999999999877654434445677654 89999999999999863    688999


Q ss_pred             HHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCC
Q 026360          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPK  162 (240)
Q Consensus       112 ~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~  162 (240)
                      .+.|+.||+|+++||+||+   |++.+.++|+++.    ++|+++.||...
T Consensus       325 ~e~~~~MKpGAiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~  368 (476)
T PTZ00075        325 LEHMRRMKNNAIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVD  368 (476)
T ss_pred             HHHHhccCCCcEEEEcCCC---chHHhHHHHHhcC----CceeecccCCCC
Confidence            9999999999999999999   7888889998754    688999998654

>PLN02494 adenosylhomocysteinase

Probab=99.71  E-value=4.5e-17  Score=150.28  Aligned_cols=121  Identities=18%  Similarity=0.232  Sum_probs=106.2

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~  111 (240)
                      ..+.|++++|+|+|.||+.+|++++++|++|+++++++.....+...|+... +++++++.+|+|+.+..    ++++++
T Consensus       250 i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTG----t~~vI~  324 (477)
T PLN02494        250 VMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTG----NKDIIM  324 (477)
T ss_pred             CccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCC----CccchH
Confidence            3479999999999999999999999999999999987655455666677654 78999999999988543    678889


Q ss_pred             HHHHccCCCCCEEEEcCC-CcccCHHHHHHH--HHhCCccEEEeeCCCCC
Q 026360          112 KDRIAKMKKGVLIVNNAR-GAIMDTQAVVDA--CSSGHIAGYSGDVWNPQ  158 (240)
Q Consensus       112 ~~~l~~mk~gailIN~sr-g~~vd~~aL~~a--L~~g~i~ga~lDV~~~E  158 (240)
                      .+.|+.||+|++++|+|| +..||+++|.++  ++.+.+. +.+|+|..|
T Consensus       325 ~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~  373 (477)
T PLN02494        325 VDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFP  373 (477)
T ss_pred             HHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcC
Confidence            999999999999999999 689999999998  9999988 999999864

>TIGR00936 ahcY adenosylhomocysteinase

Probab=99.67  E-value=4.1e-16  Score=142.55  Aligned_cols=119  Identities=17%  Similarity=0.235  Sum_probs=104.8

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccH
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~  112 (240)
                      .+.|++|+|+|+|.||+.+|+.++++|++|+++++++.....+...|+... +++++++.+|+|+.++.    +.++++.
T Consensus       192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~~aDVVItaTG----~~~vI~~  266 (406)
T TIGR00936       192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKIGDIFITATG----NKDVIRG  266 (406)
T ss_pred             CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHhcCCEEEECCC----CHHHHHH
Confidence            579999999999999999999999999999999887755555566677654 78899999999988765    5788888


Q ss_pred             HHHccCCCCCEEEEcCCCcc-cCHHHHHHHHHhCCccEEEeeCCC
Q 026360          113 DRIAKMKKGVLIVNNARGAI-MDTQAVVDACSSGHIAGYSGDVWN  156 (240)
Q Consensus       113 ~~l~~mk~gailIN~srg~~-vd~~aL~~aL~~g~i~ga~lDV~~  156 (240)
                      +.+..||+|++++|+||+.+ ||.++|.+++.+....+..+|+|.
T Consensus       267 ~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~  311 (406)
T TIGR00936       267 EHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYI  311 (406)
T ss_pred             HHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEE
Confidence            89999999999999999998 999999999988888888999876

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.64  E-value=4.2e-16  Score=126.20  Aligned_cols=115  Identities=15%  Similarity=0.277  Sum_probs=95.1

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc-HHHH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD-KDRI  115 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~-~~~l  115 (240)
                      ++|||||+|.||..+|++|...|++|.+||+++...+.+.+.|+..++++.|+++++|+|++++|..++++.++. .+.+
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~   81 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL   81 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence            689999999999999999999999999999987666667777888889999999999999999998888777663 2278


Q ss_pred             ccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEee
Q 026360          116 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  153 (240)
Q Consensus       116 ~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lD  153 (240)
                      +.+++|.++||++..++-+...+.+.+.+..+.  .+|
T Consensus        82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vd  117 (163)
T PF03446_consen   82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVR--YVD  117 (163)
T ss_dssp             GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE--EEE
T ss_pred             hccccceEEEecCCcchhhhhhhhhhhhhccce--eee
Confidence            889999999999999999999999999988876  445

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=99.62  E-value=1.3e-15  Score=134.48  Aligned_cols=94  Identities=18%  Similarity=0.290  Sum_probs=81.5

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~  111 (240)
                      ..|+||+|||||+|+||+++|++|+++|++|+++++...+.+.+...|+... ++++++++||+|++|+|+ ++++++++
T Consensus        12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~-sl~Eaak~ADVV~llLPd-~~t~~V~~   89 (335)
T PRK13403         12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVM-SVSEAVRTAQVVQMLLPD-EQQAHVYK   89 (335)
T ss_pred             hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEEC-CHHHHHhcCCEEEEeCCC-hHHHHHHH
Confidence            3689999999999999999999999999999999875544455566687654 899999999999999997 67789999


Q ss_pred             HHHHccCCCCCEEEEc
Q 026360          112 KDRIAKMKKGVLIVNN  127 (240)
Q Consensus       112 ~~~l~~mk~gailIN~  127 (240)
                      .+.++.||+|++++-.
T Consensus        90 ~eil~~MK~GaiL~f~  105 (335)
T PRK13403         90 AEVEENLREGQMLLFS  105 (335)
T ss_pred             HHHHhcCCCCCEEEEC
Confidence            8999999999977653

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.62  E-value=2.3e-15  Score=131.54  Aligned_cols=123  Identities=14%  Similarity=0.198  Sum_probs=109.1

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCC-hhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc--HH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KD  113 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~--~~  113 (240)
                      ++||+||+|.||..+|++|.+.|++|.+|||++.+ .+.....|.....+..|+.+++|+|++++|++++.+.++.  ..
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g   80 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG   80 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence            48999999999999999999999999999998766 5666677998888999999999999999999999988874  57


Q ss_pred             HHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 026360          114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (240)
Q Consensus       114 ~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP  159 (240)
                      .++.+|||+++||+|+.+......+.+.++++.+...---|....+
T Consensus        81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~  126 (286)
T COG2084          81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVP  126 (286)
T ss_pred             hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCch
Confidence            8999999999999999999999999999999999855555554444

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.53  E-value=4.5e-14  Score=124.47  Aligned_cols=123  Identities=19%  Similarity=0.261  Sum_probs=101.8

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc--HHH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR  114 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~--~~~  114 (240)
                      ++|||||+|.||..+|+.+...|++|++||+++...+.....|....++++++++++|+|++++|.+..++.++.  .+.
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~   82 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI   82 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence            589999999999999999999999999999986555555666777677899999999999999998877777653  346


Q ss_pred             HccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 026360          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (240)
Q Consensus       115 l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP  159 (240)
                      +..+++|.++||+++..+...+++.+.+.+.++.+.-..|+..+|
T Consensus        83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~  127 (296)
T PRK11559         83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP  127 (296)
T ss_pred             hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence            778899999999999999889999999988777644444554433

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.53  E-value=3.8e-14  Score=124.73  Aligned_cols=113  Identities=16%  Similarity=0.150  Sum_probs=96.4

Q ss_pred             eEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcc-c-HHHH
Q 026360           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF-D-KDRI  115 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i-~-~~~l  115 (240)
                      +|||||+|.||..+|..|...|++|++||+++...+.+...|.....+.++++++||+|++|+|.++.++.++ . ...+
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~   80 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII   80 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence            5899999999999999999999999999998755556666677666788999999999999999887777665 2 3467


Q ss_pred             ccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEE
Q 026360          116 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY  150 (240)
Q Consensus       116 ~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga  150 (240)
                      ..++++.++||+++..+.+.+++.+.+++..+...
T Consensus        81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~  115 (291)
T TIGR01505        81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYL  115 (291)
T ss_pred             hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEE
Confidence            78899999999999999999999999998776633

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.50  E-value=1.7e-13  Score=121.22  Aligned_cols=114  Identities=18%  Similarity=0.252  Sum_probs=98.3

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCc---CCEEEEcCCCChhhhhcccHH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK---CDIVVVNTPLTEKTRGMFDKD  113 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~---aDiVvl~lp~~~~t~~~i~~~  113 (240)
                      ++|||||+|.||..+|+.|...|++|++||+++...+.+.+.|.....++++++++   +|+|++++|..+.++.+++ +
T Consensus         1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~-~   79 (299)
T PRK12490          1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIK-D   79 (299)
T ss_pred             CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHH-H
Confidence            37999999999999999999999999999998655555666787777789998876   6999999998777777774 6


Q ss_pred             HHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEee
Q 026360          114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  153 (240)
Q Consensus       114 ~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lD  153 (240)
                      .+..+++|.++||+++....+..++.+.+.+..+.  .+|
T Consensus        80 i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd  117 (299)
T PRK12490         80 LYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD  117 (299)
T ss_pred             HhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence            77789999999999999999999999999988876  456

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.49  E-value=1.7e-13  Score=121.19  Aligned_cols=114  Identities=11%  Similarity=0.149  Sum_probs=98.4

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc--HHH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR  114 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~--~~~  114 (240)
                      ++|||||+|.||..+|..|...|++|++||+++...+.+.+.|.....+..++++++|+|++|+|.....+.++.  ...
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i   81 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV   81 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence            479999999999999999999999999999987666666666777677899999999999999998776666653  346


Q ss_pred             HccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEE
Q 026360          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY  150 (240)
Q Consensus       115 l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga  150 (240)
                      +..+++|.++||++++.+...+.+.+.+.+.++...
T Consensus        82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~l  117 (296)
T PRK15461         82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMM  117 (296)
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEE
Confidence            777899999999999999999999999999988743

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=99.47  E-value=2.3e-13  Score=109.36  Aligned_cols=102  Identities=22%  Similarity=0.369  Sum_probs=76.1

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~  111 (240)
                      ..+.||++.|+|||.+|+.+|+.|+++|++|++++.+|...-.+...|++.. +++++++++|+++.++.    .+.++.
T Consensus        19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG----~~~vi~   93 (162)
T PF00670_consen   19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATG----NKDVIT   93 (162)
T ss_dssp             S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SS----SSSSB-
T ss_pred             eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCC----CccccC
Confidence            4589999999999999999999999999999999998766666666788765 89999999999998876    357788


Q ss_pred             HHHHccCCCCCEEEEcCCCcc-cCHHHH
Q 026360          112 KDRIAKMKKGVLIVNNARGAI-MDTQAV  138 (240)
Q Consensus       112 ~~~l~~mk~gailIN~srg~~-vd~~aL  138 (240)
                      .+.|.+||+|+++.|++.-.. +|-+.|
T Consensus        94 ~e~~~~mkdgail~n~Gh~d~Eid~~~L  121 (162)
T PF00670_consen   94 GEHFRQMKDGAILANAGHFDVEIDVDAL  121 (162)
T ss_dssp             HHHHHHS-TTEEEEESSSSTTSBTHHHH
T ss_pred             HHHHHHhcCCeEEeccCcCceeEeeccc
Confidence            999999999999999986543 454444

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.45  E-value=5.5e-13  Score=118.09  Aligned_cols=115  Identities=20%  Similarity=0.239  Sum_probs=98.6

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCc---CCEEEEcCCCChhhhhcccHH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK---CDIVVVNTPLTEKTRGMFDKD  113 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~---aDiVvl~lp~~~~t~~~i~~~  113 (240)
                      ++|||||+|.||..+|+.|...|++|.+||+++...+.+.+.|+....+++++++.   +|+|++++|..+.+..++ ..
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~   79 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DE   79 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HH
Confidence            47999999999999999999999999999998765555666788777789988876   699999999876777766 36


Q ss_pred             HHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeC
Q 026360          114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV  154 (240)
Q Consensus       114 ~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV  154 (240)
                      ....+++|.++||++++...+...+.+.+++.++.+  +|.
T Consensus        80 l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~--~da  118 (301)
T PRK09599         80 LAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHF--VDV  118 (301)
T ss_pred             HHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEE--EeC
Confidence            777899999999999999999999999999988874  453

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=99.43  E-value=5.5e-13  Score=124.98  Aligned_cols=123  Identities=12%  Similarity=0.080  Sum_probs=104.7

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc----Cce---ecCCHHhhcCc---CCEEEEcCCCChhh
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----GAK---FEEDLDTMLPK---CDIVVVNTPLTEKT  106 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~----g~~---~~~~l~ell~~---aDiVvl~lp~~~~t  106 (240)
                      .+||+||+|.||+.+|++|...|++|.+|||++.+.+.+.+.    |..   ...+++|+++.   +|+|++++|..+.+
T Consensus         7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV   86 (493)
T PLN02350          7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPV   86 (493)
T ss_pred             CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHH
Confidence            369999999999999999999999999999987555444332    433   45688888876   99999999999988


Q ss_pred             hhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360          107 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (240)
Q Consensus       107 ~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  160 (240)
                      +.++ ...+..+++|.++||+|+...-+...+.+.+++..+.+...-|...++.
T Consensus        87 ~~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~g  139 (493)
T PLN02350         87 DQTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEG  139 (493)
T ss_pred             HHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHH
Confidence            8888 4688889999999999999999999999999999999777777766653

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=99.43  E-value=6e-13  Score=122.46  Aligned_cols=127  Identities=17%  Similarity=0.197  Sum_probs=97.0

Q ss_pred             hCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHH
Q 026360            8 RNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLD   87 (240)
Q Consensus         8 R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~   87 (240)
                      |.+........++.|+.-.. .....+.|++++|+|+|.||+.+|+.++++|++|+++|+++.....+...|+... +++
T Consensus       185 K~~~dn~~gt~~s~~~ai~r-at~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~-~l~  262 (425)
T PRK05476        185 KSKFDNRYGTGESLLDGIKR-ATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVM-TME  262 (425)
T ss_pred             CccccccHHHHhhhHHHHHH-hccCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEec-CHH
Confidence            33333333455566642110 1133579999999999999999999999999999999987755555555676644 789


Q ss_pred             hhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcc-cCHHHHHH
Q 026360           88 TMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI-MDTQAVVD  140 (240)
Q Consensus        88 ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~-vd~~aL~~  140 (240)
                      ++++.+|+|+.++.    +.++++.+.+..||+|++++|+|+... +|.++|.+
T Consensus       263 eal~~aDVVI~aTG----~~~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~  312 (425)
T PRK05476        263 EAAELGDIFVTATG----NKDVITAEHMEAMKDGAILANIGHFDNEIDVAALEE  312 (425)
T ss_pred             HHHhCCCEEEECCC----CHHHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhh
Confidence            99999999988864    467888899999999999999999876 77777754

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.42  E-value=6.9e-13  Score=116.81  Aligned_cols=96  Identities=21%  Similarity=0.335  Sum_probs=79.4

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec--CCHHhhcCcCCEEEEcCCCChhhhh
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTRG  108 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~--~~l~ell~~aDiVvl~lp~~~~t~~  108 (240)
                      +.++.|++++|+|+|.||+.+|+.|+++|++|++++|++.....+...|....  .+++++++++|+|++|+|.     .
T Consensus       146 ~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~-----~  220 (287)
T TIGR02853       146 DFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPA-----L  220 (287)
T ss_pred             CCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCCh-----H
Confidence            35789999999999999999999999999999999997644444444555432  3577889999999999994     3


Q ss_pred             cccHHHHccCCCCCEEEEcCCCc
Q 026360          109 MFDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       109 ~i~~~~l~~mk~gailIN~srg~  131 (240)
                      +++++.++.|++++++||++..+
T Consensus       221 ii~~~~l~~~k~~aliIDlas~P  243 (287)
T TIGR02853       221 VLTADVLSKLPKHAVIIDLASKP  243 (287)
T ss_pred             HhCHHHHhcCCCCeEEEEeCcCC
Confidence            67888999999999999999743

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=99.40  E-value=2.2e-12  Score=113.91  Aligned_cols=114  Identities=17%  Similarity=0.101  Sum_probs=96.4

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccH--HH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK--DR  114 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~--~~  114 (240)
                      ++|||||+|.||..+|+.|...|++|.+||+++. .+.+...|.....+..++.+++|+|++++|..+..+.++..  ..
T Consensus         1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~   79 (292)
T PRK15059          1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGC   79 (292)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcch
Confidence            3799999999999999999999999999998763 44455567777778999999999999999988777776632  35


Q ss_pred             HccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEee
Q 026360          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  153 (240)
Q Consensus       115 l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lD  153 (240)
                      ++.+++|.++||++....-+...+.+.+.+..+.  .+|
T Consensus        80 ~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vd  116 (292)
T PRK15059         80 TKASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLD  116 (292)
T ss_pred             hccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEE
Confidence            6778999999999999999999999999988776  444

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.37  E-value=2.5e-12  Score=114.79  Aligned_cols=96  Identities=16%  Similarity=0.240  Sum_probs=78.5

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCC-CChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcc
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK-MDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~-~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i  110 (240)
                      ..|+|++|||||+|+||+++|+.|+.+|++|+++++.. ...+.+...|+... +.++++++||+|++++|.+.. ..++
T Consensus        13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~~~-~~V~   90 (330)
T PRK05479         13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDEVQ-AEVY   90 (330)
T ss_pred             hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHHHH-HHHH
Confidence            35899999999999999999999999999998887653 33444556677655 899999999999999996654 6666


Q ss_pred             cHHHHccCCCCCEEEEcCCC
Q 026360          111 DKDRIAKMKKGVLIVNNARG  130 (240)
Q Consensus       111 ~~~~l~~mk~gailIN~srg  130 (240)
                      +.+.+..|++|++| -.+.|
T Consensus        91 ~~~I~~~Lk~g~iL-~~a~G  109 (330)
T PRK05479         91 EEEIEPNLKEGAAL-AFAHG  109 (330)
T ss_pred             HHHHHhcCCCCCEE-EECCC
Confidence            67788899999988 55555

>PLN02256 arogenate dehydrogenase

Probab=99.35  E-value=3.2e-11  Score=107.05  Aligned_cols=110  Identities=18%  Similarity=0.291  Sum_probs=84.8

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhc-CcCCEEEEcCCCChhhhhccc
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML-PKCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell-~~aDiVvl~lp~~~~t~~~i~  111 (240)
                      +-++++|+|||+|.||+++|+.+++.|.+|++||++. ..+.+...|+....+.++++ .++|+|++|+|. ..+..++.
T Consensus        33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~-~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~-~~~~~vl~  110 (304)
T PLN02256         33 KSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD-YSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSI-LSTEAVLR  110 (304)
T ss_pred             cCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc-HHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCH-HHHHHHHH
Confidence            3467899999999999999999999999999999875 33445556776667888876 479999999994 34555554


Q ss_pred             HHHHccCCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (240)
Q Consensus       112 ~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~  144 (240)
                      +-....++++++++|++..+-...+++.+.+..
T Consensus       111 ~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~  143 (304)
T PLN02256        111 SLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE  143 (304)
T ss_pred             hhhhhccCCCCEEEecCCchHHHHHHHHHhCCC
Confidence            322556899999999999766666666666644

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=99.35  E-value=7.8e-12  Score=110.63  Aligned_cols=117  Identities=16%  Similarity=0.188  Sum_probs=94.6

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhh---cCcCCEEEEcCCCChhhhhcccHH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTM---LPKCDIVVVNTPLTEKTRGMFDKD  113 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~el---l~~aDiVvl~lp~~~~t~~~i~~~  113 (240)
                      ++|||||+|.||..+|+.|...|++|.+||+++...+.+.+.|.....+++++   ++++|+|++++|.. .++.++ .+
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~   78 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EE   78 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HH
Confidence            47999999999999999999999999999998765555666666555566654   45689999999976 666666 46


Q ss_pred             HHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCC
Q 026360          114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (240)
Q Consensus       114 ~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~  155 (240)
                      ....+++|.++||++.+...+...+.+.+++..+.....-|.
T Consensus        79 l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vs  120 (298)
T TIGR00872        79 LAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTS  120 (298)
T ss_pred             HHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCC
Confidence            777889999999999999999999999999888774433333

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=99.34  E-value=4.3e-12  Score=110.22  Aligned_cols=116  Identities=16%  Similarity=0.190  Sum_probs=103.3

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc--
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--  111 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~--  111 (240)
                      .+.++||+||+|.||..++..|.+.|++|++||++......+.+.|....+++.|+.+.||+|+.++|+....+.++.  
T Consensus        33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~  112 (327)
T KOG0409|consen   33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGK  112 (327)
T ss_pred             cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCC
Confidence            458899999999999999999999999999999988777888888999889999999999999999999888887773  


Q ss_pred             HHHHccCCCCCEE-EEcCCCcccCHHHHHHHHHhCCccE
Q 026360          112 KDRIAKMKKGVLI-VNNARGAIMDTQAVVDACSSGHIAG  149 (240)
Q Consensus       112 ~~~l~~mk~gail-IN~srg~~vd~~aL~~aL~~g~i~g  149 (240)
                      ...++.++++... |+.++-+.-....|.++++......
T Consensus       113 ~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~  151 (327)
T KOG0409|consen  113 SGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRF  151 (327)
T ss_pred             CcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeE
Confidence            3467777888777 9999999999999999999987773

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.33  E-value=9.7e-12  Score=114.22  Aligned_cols=105  Identities=17%  Similarity=0.287  Sum_probs=89.9

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcc
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i  110 (240)
                      +..+.|++|+|+|+|.||..+|+.++++|++|+++|+++.....+...|+... ++++.+..+|+|+.++.    +..++
T Consensus       197 ~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG----~~~~i  271 (413)
T cd00401         197 DVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTG----NKDII  271 (413)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCC----CHHHH
Confidence            34579999999999999999999999999999999988777777888888655 67888999999998875    35677


Q ss_pred             cHHHHccCCCCCEEEEcCCCcc-cCHHHHHH
Q 026360          111 DKDRIAKMKKGVLIVNNARGAI-MDTQAVVD  140 (240)
Q Consensus       111 ~~~~l~~mk~gailIN~srg~~-vd~~aL~~  140 (240)
                      +.+.+..||+|++++|+|++.+ +|..+|..
T Consensus       272 ~~~~l~~mk~GgilvnvG~~~~eId~~~L~~  302 (413)
T cd00401         272 TGEHFEQMKDGAIVCNIGHFDVEIDVKGLKE  302 (413)
T ss_pred             HHHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence            8788999999999999999876 77777654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PLN02858 fructose-bisphosphate aldolase

Probab=99.32  E-value=9.8e-12  Score=128.73  Aligned_cols=118  Identities=15%  Similarity=0.099  Sum_probs=104.4

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcc--cH
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF--DK  112 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i--~~  112 (240)
                      +.++||+||+|.||..+|++|...|++|.+||+++...+.+.+.|+..++++.++.++||+|++|+|..+..+.++  ..
T Consensus         3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~   82 (1378)
T PLN02858          3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE   82 (1378)
T ss_pred             CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence            4678999999999999999999999999999998766677777888888899999999999999999988888876  34


Q ss_pred             HHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCC--ccEEEeeC
Q 026360          113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH--IAGYSGDV  154 (240)
Q Consensus       113 ~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~--i~ga~lDV  154 (240)
                      ..++.+++|.++||+|+..+-....+.+.+++.+  +.  .+|.
T Consensus        83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~--~lDa  124 (1378)
T PLN02858         83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIF--LVDA  124 (1378)
T ss_pred             hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceE--EEEc
Confidence            6788899999999999999999999999999877  55  4554

>PLN02712 arogenate dehydrogenase

Probab=99.31  E-value=8.6e-12  Score=121.13  Aligned_cols=114  Identities=14%  Similarity=0.211  Sum_probs=90.0

Q ss_pred             ccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcC-cCCEEEEcCCCChhhh
Q 026360           29 YRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP-KCDIVVVNTPLTEKTR  107 (240)
Q Consensus        29 ~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~-~aDiVvl~lp~~~~t~  107 (240)
                      ..+.++.+++|||||+|.||+++|+.++++|++|++||++.. .+.+.+.|+....+++++++ ++|+|++|+|. ..+.
T Consensus       362 ~~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~-~~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~  439 (667)
T PLN02712        362 GCVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDY-SDEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LSTE  439 (667)
T ss_pred             hccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChH-HHHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HHHH
Confidence            346778999999999999999999999999999999998743 34455678776678888775 59999999993 5667


Q ss_pred             hcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360          108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~  144 (240)
                      .++..-....+|+|++++|++.++-...+.+.+.+..
T Consensus       440 ~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~  476 (667)
T PLN02712        440 KVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ  476 (667)
T ss_pred             HHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC
Confidence            7666544446899999999999985555556555544

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=99.31  E-value=8.2e-12  Score=116.73  Aligned_cols=122  Identities=14%  Similarity=0.176  Sum_probs=101.8

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc----C--ceecCCHHhhcC---cCCEEEEcCCCChhhh
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----G--AKFEEDLDTMLP---KCDIVVVNTPLTEKTR  107 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~----g--~~~~~~l~ell~---~aDiVvl~lp~~~~t~  107 (240)
                      .+|||||+|.||..+|+.|...|++|.+||+++...+.+.+.    |  +....+++++++   ++|+|++++|..+.++
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~   81 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD   81 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence            479999999999999999999999999999987554444332    4  335678999886   5899999999888888


Q ss_pred             hcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 026360          108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP  159 (240)
                      .++ .+.+..+++|.++||++.+..-|...+.+.+.+..+.+...-|...++
T Consensus        82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~  132 (470)
T PTZ00142         82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEE  132 (470)
T ss_pred             HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHH
Confidence            887 467888999999999999999999999999999999866666665543

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=99.30  E-value=7.9e-12  Score=109.99  Aligned_cols=111  Identities=14%  Similarity=0.155  Sum_probs=94.0

Q ss_pred             EEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc--HHHHccC
Q 026360           41 TVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDRIAKM  118 (240)
Q Consensus        41 IIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~--~~~l~~m  118 (240)
                      |||+|.||..+|+.|...|++|++||+++...+...+.|+....++.++++++|+|++|+|..+..+.++.  ......+
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~   80 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV   80 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence            68999999999999999999999999987666666667777677899999999999999997777666662  4566788


Q ss_pred             CCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEee
Q 026360          119 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  153 (240)
Q Consensus       119 k~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lD  153 (240)
                      ++|.++||++..++-....+.+.+++..+.  .+|
T Consensus        81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vd  113 (288)
T TIGR01692        81 AKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMD  113 (288)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence            999999999988888888999999887776  455

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.28  E-value=6.1e-12  Score=110.15  Aligned_cols=166  Identities=17%  Similarity=0.180  Sum_probs=126.7

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCC-ChhHHHhcCceec-C---C---HHhhcCcCCEEEEcCCCChhh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM-DPQLEKETGAKFE-E---D---LDTMLPKCDIVVVNTPLTEKT  106 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~-~~~~~~~~g~~~~-~---~---l~ell~~aDiVvl~lp~~~~t  106 (240)
                      .|+.+||+|+|.+|+.-.+.++++|++|+++|++.. +.+..+.+|++.+ .   +   .+++...-|.++-++++-  .
T Consensus       181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~--a  258 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL--A  258 (360)
T ss_pred             CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeec--c
Confidence            799999999999999999999999999999998763 4445556887522 1   1   235666678777776632  2


Q ss_pred             hhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCCCCCCCeEEcCCCCCCcHHHH
Q 026360          107 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQ  186 (240)
Q Consensus       107 ~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nv~~TPH~a~~t~~~~  186 (240)
                      .+-+ ...++.||++..+|-++                          .+..|...+-+.+-+..+.+....-|...|.+
T Consensus       259 ~~~~-~~~~~~lk~~Gt~V~vg--------------------------~p~~~~~~~~~~lil~~~~I~GS~vG~~ket~  311 (360)
T KOG0023|consen  259 EHAL-EPLLGLLKVNGTLVLVG--------------------------LPEKPLKLDTFPLILGRKSIKGSIVGSRKETQ  311 (360)
T ss_pred             ccch-HHHHHHhhcCCEEEEEe--------------------------CcCCcccccchhhhcccEEEEeeccccHHHHH
Confidence            3333 35778899999998886                          23335555545556677878877778899999


Q ss_pred             HHhhhhHHHHHHHHHHHccCCCCCCccchhhhcc---cceeEeeeCCc
Q 026360          187 VIVHFFPVFMRLFTSFLSHKSNSELKYCSYAMLR---ESRICLTDTSR  231 (240)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~---~~r~~~~~~~~  231 (240)
                      +.+..  ....+|..+++--+++.||.++++|..   +|||++.-.++
T Consensus       312 E~Ldf--~a~~~ik~~IE~v~~~~v~~a~erm~kgdV~yRfVvD~s~~  357 (360)
T KOG0023|consen  312 EALDF--VARGLIKSPIELVKLSEVNEAYERMEKGDVRYRFVVDVSKS  357 (360)
T ss_pred             HHHHH--HHcCCCcCceEEEehhHHHHHHHHHHhcCeeEEEEEEcccc
Confidence            99888  888999999999999999999999976   89997765554

>PLN02858 fructose-bisphosphate aldolase

Probab=99.26  E-value=2.8e-11  Score=125.33  Aligned_cols=119  Identities=15%  Similarity=0.106  Sum_probs=101.0

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcc--cHH
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF--DKD  113 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i--~~~  113 (240)
                      .++|||||+|.||..+|++|...|++|.+||+++...+.+...|.....+..+++++||+|++|+|..++++.++  ...
T Consensus       324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g  403 (1378)
T PLN02858        324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG  403 (1378)
T ss_pred             CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence            489999999999999999999999999999998755555566677667799999999999999999888888876  345


Q ss_pred             HHccCCCCCEEEEcCCCcccCHHHHHHHHHh--CCccEEEeeC
Q 026360          114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSS--GHIAGYSGDV  154 (240)
Q Consensus       114 ~l~~mk~gailIN~srg~~vd~~aL~~aL~~--g~i~ga~lDV  154 (240)
                      .++.+++|.++||+++..+-..+.+.+.+.+  ..+...-..|
T Consensus       404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPV  446 (1378)
T PLN02858        404 AVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPV  446 (1378)
T ss_pred             HHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccC
Confidence            7888999999999999999999999999988  6665333333

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.26  E-value=2.8e-11  Score=107.10  Aligned_cols=94  Identities=26%  Similarity=0.321  Sum_probs=79.7

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec--CCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~--~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      ..+.|++++|+|+|.+|+.+++.|+.+|++|+++|+++.....+...|+...  .++.+.++++|+|+.++|.     .+
T Consensus       148 ~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----~~  222 (296)
T PRK08306        148 ITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA-----LV  222 (296)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-----hh
Confidence            4678999999999999999999999999999999998655555666776543  3667889999999999982     46


Q ss_pred             ccHHHHccCCCCCEEEEcCCC
Q 026360          110 FDKDRIAKMKKGVLIVNNARG  130 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg  130 (240)
                      ++++.++.|++++++||++..
T Consensus       223 i~~~~l~~~~~g~vIIDla~~  243 (296)
T PRK08306        223 LTKEVLSKMPPEALIIDLASK  243 (296)
T ss_pred             hhHHHHHcCCCCcEEEEEccC
Confidence            788899999999999999853

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=99.24  E-value=3.3e-11  Score=112.67  Aligned_cols=120  Identities=10%  Similarity=0.111  Sum_probs=97.7

Q ss_pred             eEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc-----CceecCCHHhhc---CcCCEEEEcCCCChhhhhc
Q 026360           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-----GAKFEEDLDTML---PKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~-----g~~~~~~l~ell---~~aDiVvl~lp~~~~t~~~  109 (240)
                      .|||||+|.||..+|+.|...|++|.+||+++...+.+.+.     ++....+++++.   +++|+|++++|..+.+..+
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V   80 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV   80 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence            38999999999999999999999999999987555544433     244556777766   4689999999987777777


Q ss_pred             ccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCC
Q 026360          110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ  158 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~E  158 (240)
                      + .+.+..+++|.++||++....-+.....+.+.+..+.+...-|...+
T Consensus        81 i-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~  128 (467)
T TIGR00873        81 I-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGE  128 (467)
T ss_pred             H-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCH
Confidence            7 46778899999999999999999999999999988886655555544

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=99.21  E-value=3.1e-11  Score=96.76  Aligned_cols=94  Identities=22%  Similarity=0.339  Sum_probs=69.0

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCC-ChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccH
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM-DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~-~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~  112 (240)
                      |+||+|+|||||..|++.|..|+..|.+|++-.+... +.+.+++.|++.. +.+|+.++||+|++.+|+. ....++.+
T Consensus         2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~-~~~eAv~~aDvV~~L~PD~-~q~~vy~~   79 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM-SVAEAVKKADVVMLLLPDE-VQPEVYEE   79 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC-EHHHHHHC-SEEEE-S-HH-HHHHHHHH
T ss_pred             cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec-cHHHHHhhCCEEEEeCChH-HHHHHHHH
Confidence            6899999999999999999999999999998887654 5666777888765 8999999999999999933 33455567


Q ss_pred             HHHccCCCCCEEEEcCCC
Q 026360          113 DRIAKMKKGVLIVNNARG  130 (240)
Q Consensus       113 ~~l~~mk~gailIN~srg  130 (240)
                      +....||+|.+++ .+.|
T Consensus        80 ~I~p~l~~G~~L~-fahG   96 (165)
T PF07991_consen   80 EIAPNLKPGATLV-FAHG   96 (165)
T ss_dssp             HHHHHS-TT-EEE-ESSS
T ss_pred             HHHhhCCCCCEEE-eCCc
Confidence            8888999999775 3444

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK08655 prephenate dehydrogenase; Provisional

Probab=99.20  E-value=3.7e-10  Score=105.04  Aligned_cols=134  Identities=19%  Similarity=0.291  Sum_probs=96.8

Q ss_pred             CeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCCh-hHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHH
Q 026360           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (240)
Q Consensus        37 ~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~  114 (240)
                      ++|+||| +|.||.++|+.|+..|++|.++++++... +.+...|+....+.++.++++|+|++++|. ..+..++ .+.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~-~~~~~vl-~~l   78 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPI-NVTEDVI-KEV   78 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCH-HHHHHHH-HHH
Confidence            4799997 89999999999999999999999875432 344556776666888899999999999995 3344444 456


Q ss_pred             HccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCC-CCCCCCCCCCeEEcCCC
Q 026360          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP-KDHPWRYMPNQAMTPHV  178 (240)
Q Consensus       115 l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~-~~~~l~~~~nv~~TPH~  178 (240)
                      ...+++++++++++..+....+++.+.+..+ ..  .+..   -|.. +..+++.-..++++|+-
T Consensus        79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~-~~--~V~~---HPmaGp~~~~~~g~~~il~p~~  137 (437)
T PRK08655         79 APHVKEGSLLMDVTSVKERPVEAMEEYAPEG-VE--ILPT---HPMFGPRTPSLKGQVVILTPTE  137 (437)
T ss_pred             HhhCCCCCEEEEcccccHHHHHHHHHhcCCC-CE--EEEc---CCCCCCCCcccCCCEEEEecCC
Confidence            6778999999999986655556666665432 22  2222   2321 22356666788999965

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=99.19  E-value=2.6e-10  Score=101.17  Aligned_cols=141  Identities=13%  Similarity=0.135  Sum_probs=91.4

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCChhHHHhcCc--eecCCHHhhcCcCCEEEEcCCCChhhhhcc
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGA--KFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~g~--~~~~~l~ell~~aDiVvl~lp~~~~t~~~i  110 (240)
                      ..++|+|||+|.||.++|..++..|.  +|++||+++...+.+...|.  ....+.++.++++|+|++|+|.. ....+ 
T Consensus         5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~-~~~~v-   82 (307)
T PRK07502          5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG-ASGAV-   82 (307)
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH-HHHHH-
Confidence            34789999999999999999998885  89999997655555555564  23457788899999999999953 22333 


Q ss_pred             cHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCC---C---CCCCCCCCCCCCCeEEcCCCCC
Q 026360          111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP---Q---PAPKDHPWRYMPNQAMTPHVSG  180 (240)
Q Consensus       111 ~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~---E---P~~~~~~l~~~~nv~~TPH~a~  180 (240)
                      ..+....++++.++++++....-..+++.+.+.. .+.  .++.++.   |   |.....+++.-..+++||+-++
T Consensus        83 ~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~-~~~--~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~  155 (307)
T PRK07502         83 AAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE-GVH--FIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGT  155 (307)
T ss_pred             HHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC-CCe--EEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCC
Confidence            3455567899999999976543222333333322 222  3332221   1   1112235566667889997544

>PLN02712 arogenate dehydrogenase

Probab=99.17  E-value=4.1e-10  Score=109.53  Aligned_cols=109  Identities=17%  Similarity=0.272  Sum_probs=81.6

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhc-CcCCEEEEcCCCChhhhhcccH
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML-PKCDIVVVNTPLTEKTRGMFDK  112 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell-~~aDiVvl~lp~~~~t~~~i~~  112 (240)
                      -+.++|||||+|.||+.+|+.|+..|++|++||++. ....+.+.|+....++++++ +++|+|++|+|. ..+..++..
T Consensus        50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~-~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~  127 (667)
T PLN02712         50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSD-HSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKS  127 (667)
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHh
Confidence            345799999999999999999999999999999863 34456667877777888866 569999999994 456666654


Q ss_pred             HHHccCCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360          113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (240)
Q Consensus       113 ~~l~~mk~gailIN~srg~~vd~~aL~~aL~~  144 (240)
                      -.+..++++++|+|+++-+..--+++.+.+..
T Consensus       128 l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~  159 (667)
T PLN02712        128 LPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPE  159 (667)
T ss_pred             hhhhcCCCCeEEEECCCCcHHHHHHHHHhcCC
Confidence            33456899999999985553223344444433

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=99.16  E-value=4.6e-11  Score=109.73  Aligned_cols=106  Identities=23%  Similarity=0.283  Sum_probs=81.2

Q ss_pred             CCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCC------CCChhHHHhcCceecCCHHhhcCcCC
Q 026360           21 EWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV------KMDPQLEKETGAKFEEDLDTMLPKCD   94 (240)
Q Consensus        21 ~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~------~~~~~~~~~~g~~~~~~l~ell~~aD   94 (240)
                      -|.+.........|+||+|+|||+|++|+..|..|+..|.+|++--|.      ..+.+.+.+.|+.. .+++|++++||
T Consensus        21 ~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~AD   99 (487)
T PRK05225         21 FMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQAD   99 (487)
T ss_pred             ecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCC
Confidence            466555433345799999999999999999999999999998843332      33444455567754 58999999999


Q ss_pred             EEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCC
Q 026360           95 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARG  130 (240)
Q Consensus        95 iVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg  130 (240)
                      +|++.+|++ . .+.+..+.+..||+|++|. .|.|
T Consensus       100 vVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~-fsHG  132 (487)
T PRK05225        100 LVINLTPDK-Q-HSDVVRAVQPLMKQGAALG-YSHG  132 (487)
T ss_pred             EEEEcCChH-H-HHHHHHHHHhhCCCCCEEE-ecCC
Confidence            999999988 3 6666789999999999764 4444

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=99.15  E-value=2.6e-10  Score=99.95  Aligned_cols=138  Identities=16%  Similarity=0.144  Sum_probs=87.3

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCce-ecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  115 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l  115 (240)
                      ++|+|||+|.||.++|..|+..|++|++||+++...+.+...|.. ...+..+.++++|+|++|+|... ...+ .++..
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~-~~~~-~~~l~   78 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGL-LLPP-SEQLI   78 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHH-HHHH-HHHHH
Confidence            479999999999999999999999999999876555555555542 22222356789999999999432 2333 34666


Q ss_pred             ccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEee-CCCCCCCC---CCCCCCCCCCeEEcCCCCC
Q 026360          116 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD-VWNPQPAP---KDHPWRYMPNQAMTPHVSG  180 (240)
Q Consensus       116 ~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lD-V~~~EP~~---~~~~l~~~~nv~~TPH~a~  180 (240)
                      ..+++++++++++.-+.-    ..+++........+.- ++..|...   ....++.-..+++||+-.+
T Consensus        79 ~~l~~~~ii~d~~Svk~~----~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~  143 (279)
T PRK07417         79 PALPPEAIVTDVGSVKAP----IVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENT  143 (279)
T ss_pred             HhCCCCcEEEeCcchHHH----HHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCC
Confidence            778999999999875432    2333332221212211 11111110   1122566677899997653

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=99.15  E-value=1.8e-10  Score=102.64  Aligned_cols=95  Identities=21%  Similarity=0.331  Sum_probs=72.9

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCC-CCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccH
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV-KMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~-~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~  112 (240)
                      |+|++|||||+|+||+++|+.|+.+|++|+++++. ....+.+.+.|+... +.++++++||+|++++|.... ...+.+
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~~-~~~v~~   78 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQADLIMNLLPDEVQ-HEVYEA   78 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHhcCCEEEEeCCcHhH-HHHHHH
Confidence            57999999999999999999999999998766543 333344446677654 688899999999999994423 334455


Q ss_pred             HHHccCCCCCEEEEcCCCc
Q 026360          113 DRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       113 ~~l~~mk~gailIN~srg~  131 (240)
                      +....++++. +|.++.|-
T Consensus        79 ei~~~l~~g~-iVs~aaG~   96 (314)
T TIGR00465        79 EIQPLLKEGK-TLGFSHGF   96 (314)
T ss_pred             HHHhhCCCCc-EEEEeCCc
Confidence            6777788886 78888774

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=99.12  E-value=8.5e-11  Score=86.37  Aligned_cols=90  Identities=20%  Similarity=0.321  Sum_probs=66.5

Q ss_pred             eEEEEccChHHHHHHHHhccCC---CEEEEE-cCCCCChhH-HHhcCceecC-CHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360           38 TVGTVGCGRIGKLLLQRLKPFN---CNLLYH-DRVKMDPQL-EKETGAKFEE-DLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~~~G---~~V~~~-d~~~~~~~~-~~~~g~~~~~-~l~ell~~aDiVvl~lp~~~~t~~~i~  111 (240)
                      ||||||+|+||.++++.+...|   .+|+.+ ++++..... ....++.... +..++++++|+|++++|  |....-+.
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~--p~~~~~v~   78 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVK--PQQLPEVL   78 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S---GGGHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEEC--HHHHHHHH
Confidence            6999999999999999999999   899844 887644433 3556665554 78999999999999998  33323333


Q ss_pred             HHHHccCCCCCEEEEcCCC
Q 026360          112 KDRIAKMKKGVLIVNNARG  130 (240)
Q Consensus       112 ~~~l~~mk~gailIN~srg  130 (240)
                      .+. ....++.++|++.-|
T Consensus        79 ~~i-~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   79 SEI-PHLLKGKLVISIAAG   96 (96)
T ss_dssp             HHH-HHHHTTSEEEEESTT
T ss_pred             HHH-hhccCCCEEEEeCCC
Confidence            344 567789999998754

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PLN02688 pyrroline-5-carboxylate reductase

Probab=99.08  E-value=6.8e-10  Score=96.33  Aligned_cols=104  Identities=13%  Similarity=0.244  Sum_probs=80.9

Q ss_pred             CeEEEEccChHHHHHHHHhccCCC----EEEEE-cCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNC----NLLYH-DRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~----~V~~~-d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~  111 (240)
                      ++|||||+|+||.++++.|...|+    +|+++ ++++...+.+.+.|+....+..++++++|+|++|+| .+....++ 
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl-   78 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVL-   78 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHH-
Confidence            579999999999999999998887    88888 887655555556788777788899999999999997 44555555 


Q ss_pred             HHHHccCCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (240)
Q Consensus       112 ~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~  144 (240)
                      .+....++++.++|++..|  +..+.+.+.+..
T Consensus        79 ~~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~~  109 (266)
T PLN02688         79 TELRPLLSKDKLLVSVAAG--ITLADLQEWAGG  109 (266)
T ss_pred             HHHHhhcCCCCEEEEecCC--CcHHHHHHHcCC
Confidence            3455667889999988765  466677666543

>PRK08507 prephenate dehydrogenase; Validated

Probab=99.08  E-value=1.3e-09  Score=95.28  Aligned_cols=100  Identities=16%  Similarity=0.290  Sum_probs=72.2

Q ss_pred             CeEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCChhHHHhcCce-ecCCHHhhcCcCCEEEEcCCCChhhhhcccHH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGAK-FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  113 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~g~~-~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~  113 (240)
                      ++|+|||+|.||.++|..|+..|.  +|++||+++...+.+.+.|+. ...+.+++. ++|+|++|+|... ...++ .+
T Consensus         1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~-~~~~~-~~   77 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDA-IIEIL-PK   77 (275)
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHH-HHHHH-HH
Confidence            479999999999999999998885  799999876555555556653 344677765 5999999999433 33333 35


Q ss_pred             HHccCCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360          114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (240)
Q Consensus       114 ~l~~mk~gailIN~srg~~vd~~aL~~aL~~  144 (240)
                      ... +++++++++++.-    ...+.+.+.+
T Consensus        78 l~~-l~~~~iv~d~gs~----k~~i~~~~~~  103 (275)
T PRK08507         78 LLD-IKENTTIIDLGST----KAKIIESVPK  103 (275)
T ss_pred             Hhc-cCCCCEEEECccc----hHHHHHHHHH
Confidence            556 8899999997652    3445555544

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=99.08  E-value=2.4e-09  Score=93.87  Aligned_cols=136  Identities=21%  Similarity=0.190  Sum_probs=92.0

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCC--CChhHHHhcCceec--CCH-HhhcCcCCEEEEcCCCChhhhhcc
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK--MDPQLEKETGAKFE--EDL-DTMLPKCDIVVVNTPLTEKTRGMF  110 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~--~~~~~~~~~g~~~~--~~l-~ell~~aDiVvl~lp~~~~t~~~i  110 (240)
                      -++|+|+|+|.||+++|+.++..|+.|.+++++.  .....+.++|+...  .+. .+...++|+|++++|- ..+..++
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi-~~~~~~l   81 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPI-EATEEVL   81 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccH-HHHHHHH
Confidence            4689999999999999999999999875555443  33344445665321  233 6778889999999994 3344444


Q ss_pred             cHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCC---CCCCCCCCCCeEEcCCCC
Q 026360          111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP---KDHPWRYMPNQAMTPHVS  179 (240)
Q Consensus       111 ~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~---~~~~l~~~~nv~~TPH~a  179 (240)
                       ++....+|+|+++++++.-+----+++.+.+.+.. ...     ..-|..   ...+++....+++||.-.
T Consensus        82 -~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~v-----g~HPM~G~~~~~~lf~~~~~vltp~~~  146 (279)
T COG0287          82 -KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFV-----GGHPMFGPEADAGLFENAVVVLTPSEG  146 (279)
T ss_pred             -HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeE-----ecCCCCCCcccccccCCCEEEEcCCCC
Confidence             34555799999999999876555555555554332 222     222432   245677777899999653

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=99.06  E-value=2.6e-09  Score=94.28  Aligned_cols=104  Identities=16%  Similarity=0.185  Sum_probs=78.1

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhH-----------HHhc------------C-ceecCCHHhhcCc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-----------EKET------------G-AKFEEDLDTMLPK   92 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~-----------~~~~------------g-~~~~~~l~ell~~   92 (240)
                      ++|||||+|.||..+|..+...|++|++||+++...+.           ..+.            + ....++. +.+++
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~   83 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELRD   83 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhCC
Confidence            68999999999999999999999999999987643321           1111            1 1233344 56899


Q ss_pred             CCEEEEcCCCChhhhhcccHHHHccCCCCCEEE-EcCCCcccCHHHHHHHHHh
Q 026360           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACSS  144 (240)
Q Consensus        93 aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailI-N~srg~~vd~~aL~~aL~~  144 (240)
                      ||+|+.|+|..++.+..+..+..+.++++++|+ |+|.-   ....+.+.+..
T Consensus        84 aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i---~~~~l~~~~~~  133 (295)
T PLN02545         84 ADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSI---SITRLASATQR  133 (295)
T ss_pred             CCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCC---CHHHHHhhcCC
Confidence            999999999999988888777777899999887 66655   44556666643

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=99.05  E-value=8.8e-10  Score=97.94  Aligned_cols=103  Identities=20%  Similarity=0.347  Sum_probs=89.1

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccH
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~  112 (240)
                      -+.||++.|.|||.+|+.+|.++++.|++|++...+|...-.+...|++.. +++++...+|+++.++.    ++++|..
T Consensus       206 liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~-~m~~Aa~~gDifiT~TG----nkdVi~~  280 (420)
T COG0499         206 LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKTGDIFVTATG----NKDVIRK  280 (420)
T ss_pred             eecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEE-EhHHhhhcCCEEEEccC----CcCccCH
Confidence            479999999999999999999999999999999987766666666788765 89999999999999986    5789999


Q ss_pred             HHHccCCCCCEEEEcCCCcc-cCHHHHHH
Q 026360          113 DRIAKMKKGVLIVNNARGAI-MDTQAVVD  140 (240)
Q Consensus       113 ~~l~~mk~gailIN~srg~~-vd~~aL~~  140 (240)
                      +.+..||+|+++.|.|.=.+ +|.+.|.+
T Consensus       281 eh~~~MkDgaIl~N~GHFd~EI~~~~L~~  309 (420)
T COG0499         281 EHFEKMKDGAILANAGHFDVEIDVAGLEE  309 (420)
T ss_pred             HHHHhccCCeEEecccccceeccHHHHHH
Confidence            99999999999999997555 55555543

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.05  E-value=7.3e-09  Score=91.13  Aligned_cols=139  Identities=14%  Similarity=0.127  Sum_probs=93.7

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-------------------------cCceecCCHHhhcC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-------------------------TGAKFEEDLDTMLP   91 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-------------------------~g~~~~~~l~ell~   91 (240)
                      ++|+|||.|.||..+|..+...|++|++||+++...+...+                         ..+...+++++.++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~   83 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK   83 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence            58999999999999999999999999999987543222110                         12334568888899


Q ss_pred             cCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCCCCCCC
Q 026360           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN  171 (240)
Q Consensus        92 ~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~n  171 (240)
                      .||+|+.++|...+.+..+-++..+.++++++|+..+.+  +....+.+.+... -+..++.-        .+|.+..+.
T Consensus        84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt--~~~~~~~~~~~~~-~r~vg~Hf--------~~p~~~~~l  152 (287)
T PRK08293         84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST--LLPSQFAEATGRP-EKFLALHF--------ANEIWKNNT  152 (287)
T ss_pred             CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc--CCHHHHHhhcCCc-ccEEEEcC--------CCCCCcCCe
Confidence            999999999966555555555666778889988543333  3455666666432 23344431        223446677


Q ss_pred             eEEcCCCCCCcHHHHH
Q 026360          172 QAMTPHVSGTTIDAQV  187 (240)
Q Consensus       172 v~~TPH~a~~t~~~~~  187 (240)
                      +.+.|+-. .+.++.+
T Consensus       153 vevv~~~~-t~~~~~~  167 (287)
T PRK08293        153 AEIMGHPG-TDPEVFD  167 (287)
T ss_pred             EEEeCCCC-CCHHHHH
Confidence            88888654 3444443

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.03  E-value=3.8e-09  Score=94.39  Aligned_cols=114  Identities=13%  Similarity=0.161  Sum_probs=85.9

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-----------c---------CceecCCHHhhcCcCCEE
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------T---------GAKFEEDLDTMLPKCDIV   96 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-----------~---------g~~~~~~l~ell~~aDiV   96 (240)
                      ++|||||.|.||..+|..+...|++|.+||+++...+....           .         .+....++++.+++||+|
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV   87 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI   87 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence            68999999999999999999999999999997543221110           1         124556888999999999


Q ss_pred             EEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEee
Q 026360           97 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  153 (240)
Q Consensus        97 vl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lD  153 (240)
                      +-++|.+.+.+..+..+.-+.++++++| .+++. -+...++.+.++. .-+..++-
T Consensus        88 iEavpE~l~vK~~lf~~l~~~~~~~aIl-aSnTS-~l~~s~la~~~~~-p~R~~g~H  141 (321)
T PRK07066         88 QESAPEREALKLELHERISRAAKPDAII-ASSTS-GLLPTDFYARATH-PERCVVGH  141 (321)
T ss_pred             EECCcCCHHHHHHHHHHHHHhCCCCeEE-EECCC-ccCHHHHHHhcCC-cccEEEEe
Confidence            9999999988888888888889999844 44444 4577777777743 23334444

>PRK06545 prephenate dehydrogenase; Validated

Probab=99.03  E-value=2e-09  Score=97.73  Aligned_cols=135  Identities=19%  Similarity=0.196  Sum_probs=88.7

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc--Cce--ecCCHHhhcCcCCEEEEcCCCChhhhhcccH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--GAK--FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~--g~~--~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~  112 (240)
                      ++|+|||+|.||.++|+.|+..|++|.+|++++.........  ++.  ...++++++++||+|++|+|. ..+..++ .
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~-~~~~~vl-~   78 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPV-DATAALL-A   78 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCH-HHHHHHH-H
Confidence            479999999999999999999999988888766444333332  321  234678889999999999995 3445554 3


Q ss_pred             HHHc-cCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCC---------CCCCCCCCCCeEEcCCCC
Q 026360          113 DRIA-KMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP---------KDHPWRYMPNQAMTPHVS  179 (240)
Q Consensus       113 ~~l~-~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~---------~~~~l~~~~nv~~TPH~a  179 (240)
                      +... .+++++++++++.-+.-..+++.+.+. ....  .++.+   |.+         ....++.-...++||+-.
T Consensus        79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~-~~~~--~ig~H---PMaG~e~sG~~aa~~~lf~g~~~il~~~~~  149 (359)
T PRK06545         79 ELADLELKPGVIVTDVGSVKGAILAEAEALLG-DLIR--FVGGH---PMAGSHKSGVAAARADLFENAPWVLTPDDH  149 (359)
T ss_pred             HHhhcCCCCCcEEEeCccccHHHHHHHHHhcC-CCCe--EEeeC---CcCcCchhhHHHhcHHHHCCCcEEEecCCC
Confidence            4444 478999999998776543444433322 2222  23322   322         123456666688999754

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=99.02  E-value=3.6e-09  Score=88.57  Aligned_cols=109  Identities=22%  Similarity=0.256  Sum_probs=85.0

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH-hcCceecCCHHhhcC-cCCEEEEcCCCChhhhhc
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFEEDLDTMLP-KCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~~~~~l~ell~-~aDiVvl~lp~~~~t~~~  109 (240)
                      .+++||+++|+|+|+||+.+|+.|..+|++|+++|+++....... ..+...+ +.++++. ++|+++.|..     .++
T Consensus        24 ~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v-~~~~l~~~~~Dv~vp~A~-----~~~   97 (200)
T cd01075          24 DSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVV-APEEIYSVDADVFAPCAL-----GGV   97 (200)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-cchhhccccCCEEEeccc-----ccc
Confidence            368999999999999999999999999999999998754333332 3366655 4456664 7999987765     468


Q ss_pred             ccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360          110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      ++.+.++.|+. .+++.-+.+.+-| ..-.+.|++..+.
T Consensus        98 I~~~~~~~l~~-~~v~~~AN~~~~~-~~~~~~L~~~Gi~  134 (200)
T cd01075          98 INDDTIPQLKA-KAIAGAANNQLAD-PRHGQMLHERGIL  134 (200)
T ss_pred             cCHHHHHHcCC-CEEEECCcCccCC-HhHHHHHHHCCCE
Confidence            88899999974 5788888877766 6677788888776

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.02  E-value=8.8e-10  Score=96.43  Aligned_cols=104  Identities=15%  Similarity=0.308  Sum_probs=80.1

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCC----EEEEEcCCCCChhHHH-hcCceecCCHHhhcCcCCEEEEcCCCChhhhhcc
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNC----NLLYHDRVKMDPQLEK-ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~----~V~~~d~~~~~~~~~~-~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i  110 (240)
                      .++|||||+|+||.++++.|...|+    +|+++|+++...+.+. ..|+....+.++++++||+|++++|. .....++
T Consensus         2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl   80 (272)
T PRK12491          2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYSSVI   80 (272)
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHH
Confidence            3589999999999999999987774    6999998765544443 36776667888899999999999993 4445544


Q ss_pred             cHHHHccCCCCCEEEEcCCCcccCHHHHHHHHH
Q 026360          111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  143 (240)
Q Consensus       111 ~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~  143 (240)
                       .+....++++.++|++.-|  ++.+.|.+.+.
T Consensus        81 -~~l~~~~~~~~lvISi~AG--i~i~~l~~~l~  110 (272)
T PRK12491         81 -NQIKDQIKNDVIVVTIAAG--KSIKSTENEFD  110 (272)
T ss_pred             -HHHHHhhcCCcEEEEeCCC--CcHHHHHHhcC
Confidence             3455557888999999987  56677777664

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=99.02  E-value=2.9e-09  Score=98.71  Aligned_cols=136  Identities=10%  Similarity=0.106  Sum_probs=92.4

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCce----------------ecCCHHhhcCcCCEEEE
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK----------------FEEDLDTMLPKCDIVVV   98 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~----------------~~~~l~ell~~aDiVvl   98 (240)
                      ..++|||||+|.||..+|..+.. |++|++||+++...+... .|..                ..++..+.+++||++++
T Consensus         5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii   82 (425)
T PRK15182          5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYII   82 (425)
T ss_pred             CCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEE
Confidence            34789999999999999999877 799999999875544443 2221                22233456899999999


Q ss_pred             cCCCC------hhhhhcc--cHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhC--CccEEEee----CCCCCCCCCCC
Q 026360           99 NTPLT------EKTRGMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG--HIAGYSGD----VWNPQPAPKDH  164 (240)
Q Consensus        99 ~lp~~------~~t~~~i--~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g--~i~ga~lD----V~~~EP~~~~~  164 (240)
                      |+|..      ++...+.  .....+.+++|.++|+.|+-.+-..+.+++.+.+.  ++.  ..|    +|.+||.....
T Consensus        83 ~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~--~~~~~~~~~~PE~v~~G~  160 (425)
T PRK15182         83 TVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMT--FNQDFYVGYSPERINPGD  160 (425)
T ss_pred             EcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCC--cCCCeeEeeCCCcCCCCc
Confidence            99954      2334443  34567789999999999999998888765544332  222  122    35668776543


Q ss_pred             ---CCCCCCCeEE
Q 026360          165 ---PWRYMPNQAM  174 (240)
Q Consensus       165 ---~l~~~~nv~~  174 (240)
                         .+...|.++.
T Consensus       161 a~~~~~~~~riv~  173 (425)
T PRK15182        161 KKHRLTNIKKITS  173 (425)
T ss_pred             ccccccCCCeEEE
Confidence               3445555543

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.01  E-value=1.8e-09  Score=91.32  Aligned_cols=118  Identities=21%  Similarity=0.260  Sum_probs=102.2

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhc---CcCCEEEEcCCCChhhhhcccHH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML---PKCDIVVVNTPLTEKTRGMFDKD  113 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell---~~aDiVvl~lp~~~~t~~~i~~~  113 (240)
                      +++|.||+|+||..+++++...|++|++||+++...+.+...|+....++++++   ....+|.+.+|....|..+++ +
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~-~   79 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVID-D   79 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHH-H
Confidence            579999999999999999999999999999988777777777887777888765   456799999998877777764 6


Q ss_pred             HHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCC
Q 026360          114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP  157 (240)
Q Consensus       114 ~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~  157 (240)
                      .-..|.+|-++|+-+...--|.....+.|.+..|.  .+||=..
T Consensus        80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~GTS  121 (300)
T COG1023          80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVGTS  121 (300)
T ss_pred             HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEeccCC
Confidence            77789999999999999999999999999999998  7887543

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.01  E-value=8.9e-10  Score=96.93  Aligned_cols=115  Identities=11%  Similarity=0.098  Sum_probs=83.2

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-------c-----------------CceecCCHHhhcCc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-------T-----------------GAKFEEDLDTMLPK   92 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-------~-----------------g~~~~~~l~ell~~   92 (240)
                      ++|+|||.|.||..+|..+...|++|++||+++...+...+       .                 .+....++++.+++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~   81 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD   81 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence            57999999999999999999999999999987544332211       0                 12345678889999


Q ss_pred             CCEEEEcCCCChhhhhcccHHHHccCCCCCEE-EEcCCCcccCHHHHHHHHHhCCccEEEeeCC
Q 026360           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLI-VNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (240)
Q Consensus        93 aDiVvl~lp~~~~t~~~i~~~~l~~mk~gail-IN~srg~~vd~~aL~~aL~~g~i~ga~lDV~  155 (240)
                      ||+|+.|+|...+.+..+..+..+.+++++++ +|+|..++   ..+.+.++. .-...++..+
T Consensus        82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~~-~~r~~g~h~~  141 (288)
T PRK09260         82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTKR-PERVIAMHFF  141 (288)
T ss_pred             CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEEecC
Confidence            99999999987776666655666778999877 78877544   456665532 2333455544

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.01  E-value=1.5e-09  Score=96.44  Aligned_cols=82  Identities=20%  Similarity=0.287  Sum_probs=67.4

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHH
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~  114 (240)
                      .+++|+|||+|.||+.+|+.|...|++|.+|+|+..             .+++++++++|+|++++|. +....++. +.
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~-~~~~~v~~-~l   67 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSM-KGVRPVAE-QV   67 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECCh-HHHHHHHH-HH
Confidence            467999999999999999999999999999998642             3678889999999999996 46666653 33


Q ss_pred             Hc-cCCCCCEEEEcCCCc
Q 026360          115 IA-KMKKGVLIVNNARGA  131 (240)
Q Consensus       115 l~-~mk~gailIN~srg~  131 (240)
                      .. .+++++++|++++|-
T Consensus        68 ~~~~~~~~~ivi~~s~gi   85 (308)
T PRK14619         68 QALNLPPETIIVTATKGL   85 (308)
T ss_pred             HHhcCCCCcEEEEeCCcc
Confidence            23 478899999998853

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=99.00  E-value=1.1e-09  Score=95.53  Aligned_cols=94  Identities=20%  Similarity=0.299  Sum_probs=83.3

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccH
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~  112 (240)
                      -+.||.+.|.|||.+|+.+|+.|++||..|++...+|...-.+...|++.. +++|++++.|+++.++.    ++.+|..
T Consensus       211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~-tm~ea~~e~difVTtTG----c~dii~~  285 (434)
T KOG1370|consen  211 MIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVT-TLEEAIREVDIFVTTTG----CKDIITG  285 (434)
T ss_pred             eecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEee-eHHHhhhcCCEEEEccC----CcchhhH
Confidence            368999999999999999999999999999999887766666666788765 99999999999998875    6788999


Q ss_pred             HHHccCCCCCEEEEcCCCc
Q 026360          113 DRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       113 ~~l~~mk~gailIN~srg~  131 (240)
                      +.|.+||+++++.|++.-.
T Consensus       286 ~H~~~mk~d~IvCN~Ghfd  304 (434)
T KOG1370|consen  286 EHFDQMKNDAIVCNIGHFD  304 (434)
T ss_pred             HHHHhCcCCcEEecccccc
Confidence            9999999999999998654

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.99  E-value=1.1e-08  Score=90.17  Aligned_cols=103  Identities=18%  Similarity=0.273  Sum_probs=76.3

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-----------cC-------------ceecCCHHhhcCc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------TG-------------AKFEEDLDTMLPK   92 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~~~l~ell~~   92 (240)
                      ++|+|||.|.||..+|..+...|++|++||+++...+...+           .|             +...++++ .+++
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~   83 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD   83 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence            68999999999999999999999999999987543322110           12             23445665 4789


Q ss_pred             CCEEEEcCCCChhhhhcccHHHHccCCCCCEEE-EcCCCcccCHHHHHHHHH
Q 026360           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACS  143 (240)
Q Consensus        93 aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailI-N~srg~~vd~~aL~~aL~  143 (240)
                      ||+|+.++|..++.+..+-.+..+.++++++|+ |+|.-.   ..++.+.+.
T Consensus        84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~s~la~~~~  132 (292)
T PRK07530         84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS---ITRLASATD  132 (292)
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcC
Confidence            999999999777766665567777889999998 665543   346777664

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=98.99  E-value=2.5e-09  Score=98.83  Aligned_cols=108  Identities=18%  Similarity=0.209  Sum_probs=78.0

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCce--ecCCHHhh---------------cCcCCEEEEc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK--FEEDLDTM---------------LPKCDIVVVN   99 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~--~~~~l~el---------------l~~aDiVvl~   99 (240)
                      ++|+|||+|.||..+|..|...|++|++||+++...+... .|..  ....++++               +++||+|++|
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~-~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~   82 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTIN-RGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA   82 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHH-CCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence            6899999999999999999999999999998765444322 1211  01123322               3479999999


Q ss_pred             CCCC------hhhhhcc--cHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhC
Q 026360          100 TPLT------EKTRGMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (240)
Q Consensus       100 lp~~------~~t~~~i--~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g  145 (240)
                      +|..      ++...+.  .......+++|+++|+.|.-.+-..+.+...+.+.
T Consensus        83 vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~  136 (415)
T PRK11064         83 VPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA  136 (415)
T ss_pred             cCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence            9953      1112221  24567778999999999998888888888877664

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=98.98  E-value=5.1e-09  Score=96.63  Aligned_cols=106  Identities=16%  Similarity=0.206  Sum_probs=78.2

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-------------------cC-ceecCCHHhhcCcCCEE
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-------------------TG-AKFEEDLDTMLPKCDIV   96 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-------------------~g-~~~~~~l~ell~~aDiV   96 (240)
                      ++|||||+|.||..+|..|...|++|++||+++...+....                   .| +....+++++++++|+|
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv   80 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI   80 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence            47999999999999999999999999999987543322211                   23 44556788889999999


Q ss_pred             EEcCCCChh------hhhcc--cHHHHccCCCCCEEEEcCCCcccCHHHHHHHH
Q 026360           97 VVNTPLTEK------TRGMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDAC  142 (240)
Q Consensus        97 vl~lp~~~~------t~~~i--~~~~l~~mk~gailIN~srg~~vd~~aL~~aL  142 (240)
                      ++|+|....      ...+.  .....+.+++|.++|+.|.-.+=..+.+.+.+
T Consensus        81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~  134 (411)
T TIGR03026        81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPI  134 (411)
T ss_pred             EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHH
Confidence            999995432      11121  23456678999999999987777777776444

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK08818 prephenate dehydrogenase; Provisional

Probab=98.98  E-value=1.1e-08  Score=93.05  Aligned_cols=122  Identities=20%  Similarity=0.282  Sum_probs=82.0

Q ss_pred             cCCCeEEEEcc-ChHHHHHHHHhcc-CCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360           34 LEGKTVGTVGC-GRIGKLLLQRLKP-FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        34 l~g~~vgIIG~-G~iG~~~A~~l~~-~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~  111 (240)
                      +.-.+|+|||+ |.||+++|+.|+. +|.+|+++|+..           ....++++.+++||+|++|+|.. .+..++.
T Consensus         2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d-----------~~~~~~~~~v~~aDlVilavPv~-~~~~~l~   69 (370)
T PRK08818          2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPAD-----------PGSLDPATLLQRADVLIFSAPIR-HTAALIE   69 (370)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCc-----------cccCCHHHHhcCCCEEEEeCCHH-HHHHHHH
Confidence            35679999999 9999999999996 589999999841           01236788899999999999943 3333332


Q ss_pred             HHHH---ccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCC--CCCCCCCCCCeEEcCC
Q 026360          112 KDRI---AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP--KDHPWRYMPNQAMTPH  177 (240)
Q Consensus       112 ~~~l---~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~--~~~~l~~~~nv~~TPH  177 (240)
                       +..   ..++++++++|++.-+-    .+.+++......     +...-|..  ..+.+++-.++++||.
T Consensus        70 -~l~~~~~~l~~~~iVtDVgSvK~----~i~~~~~~~~~~-----fVG~HPMaG~E~s~lf~g~~~iltp~  130 (370)
T PRK08818         70 -EYVALAGGRAAGQLWLDVTSIKQ----APVAAMLASQAE-----VVGLHPMTAPPKSPTLKGRVMVVCEA  130 (370)
T ss_pred             -HHhhhhcCCCCCeEEEECCCCcH----HHHHHHHhcCCC-----EEeeCCCCCCCCCcccCCCeEEEeCC
Confidence             332   23799999999997552    222222222222     22223432  2345677777899986

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.97  E-value=6.9e-09  Score=94.57  Aligned_cols=96  Identities=18%  Similarity=0.257  Sum_probs=74.3

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH-hcCce---e---cCCHHhhcCcCCEEEEcCCCC-h
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAK---F---EEDLDTMLPKCDIVVVNTPLT-E  104 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~---~---~~~l~ell~~aDiVvl~lp~~-~  104 (240)
                      .+.+.++.|+|.|.+|+.+++.++.+|++|.++|+++...+... ..+..   .   ..++.+.+.++|+|+.+++.+ .
T Consensus       164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~  243 (370)
T TIGR00518       164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA  243 (370)
T ss_pred             CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence            36778999999999999999999999999999998754333332 23321   1   124667889999999998542 2


Q ss_pred             hhhhcccHHHHccCCCCCEEEEcC
Q 026360          105 KTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       105 ~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      .+..+++++.++.||+++++||++
T Consensus       244 ~~p~lit~~~l~~mk~g~vIvDva  267 (370)
T TIGR00518       244 KAPKLVSNSLVAQMKPGAVIVDVA  267 (370)
T ss_pred             CCCcCcCHHHHhcCCCCCEEEEEe
Confidence            345678999999999999999997

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.95  E-value=4.2e-09  Score=94.26  Aligned_cols=103  Identities=18%  Similarity=0.176  Sum_probs=78.2

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc--------C------ceecCCHHhhcCcCCEEEEcCC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------G------AKFEEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~--------g------~~~~~~l~ell~~aDiVvl~lp  101 (240)
                      .++|+|||.|.||..+|..|...|++|.+|+|++...+.....        |      +...+++++.++.+|+|++++|
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~   83 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP   83 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence            4689999999999999999999999999999975433333322        2      3345688888899999999999


Q ss_pred             CChhhhhcccHHHHccCCCCCEEEEcCCC-cccC--HHHHHHHHHh
Q 026360          102 LTEKTRGMFDKDRIAKMKKGVLIVNNARG-AIMD--TQAVVDACSS  144 (240)
Q Consensus       102 ~~~~t~~~i~~~~l~~mk~gailIN~srg-~~vd--~~aL~~aL~~  144 (240)
                      .. .+     ++.++.++++.++|+++.| ..-+  ...+.+.+.+
T Consensus        84 ~~-~~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~  123 (328)
T PRK14618         84 SK-AL-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF  123 (328)
T ss_pred             hH-HH-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence            54 22     4566778999999999997 4333  5566666655

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.94  E-value=9.6e-09  Score=81.65  Aligned_cols=111  Identities=16%  Similarity=0.269  Sum_probs=80.5

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCC-CEEEEEcCCCCChhH-HHhcCc----eecCCHHhhcCcCCEEEEcCCCChh-
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQL-EKETGA----KFEEDLDTMLPKCDIVVVNTPLTEK-  105 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G-~~V~~~d~~~~~~~~-~~~~g~----~~~~~l~ell~~aDiVvl~lp~~~~-  105 (240)
                      ++.+++++|+|.|.+|+.+++.+...| .+|.++|+++...+. .+..+.    ....+.+++++++|+|++++|.... 
T Consensus        16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~   95 (155)
T cd01065          16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKP   95 (155)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCC
Confidence            356899999999999999999999885 789999987544333 233332    1345777888999999999996543 


Q ss_pred             hhh-cccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360          106 TRG-MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       106 t~~-~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      ... .+..   ..++++.+++|++..+...  .+.+++++.++.
T Consensus        96 ~~~~~~~~---~~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~~  134 (155)
T cd01065          96 GDELPLPP---SLLKPGGVVYDVVYNPLET--PLLKEARALGAK  134 (155)
T ss_pred             CCCCCCCH---HHcCCCCEEEEcCcCCCCC--HHHHHHHHCCCc
Confidence            112 2232   2368999999998775444  888888876554

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=98.94  E-value=2e-09  Score=96.25  Aligned_cols=161  Identities=17%  Similarity=0.228  Sum_probs=119.3

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-C-----CHHhhcCcCCEEEEcCCCChhhhh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-E-----DLDTMLPKCDIVVVNTPLTEKTRG  108 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~-----~l~ell~~aDiVvl~lp~~~~t~~  108 (240)
                      .|++|+|+|+|.+|....+.++++|++|+++|+++.+.+.++++|...+ .     ..+++-+.+|+++.++| ...   
T Consensus       166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~---  241 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PAT---  241 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhh---
Confidence            4999999999999999999999999999999999888888899887532 1     12333334999999998 322   


Q ss_pred             cccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCC-CCCCCCCCCCeEEcCCCCCCcHHHHH
Q 026360          109 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP-KDHPWRYMPNQAMTPHVSGTTIDAQV  187 (240)
Q Consensus       109 ~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~-~~~~l~~~~nv~~TPH~a~~t~~~~~  187 (240)
                       + ...++.++++..++-+|-.                         ..+|.+ ......-+.++-+..+..|.-.|.++
T Consensus       242 -~-~~~l~~l~~~G~~v~vG~~-------------------------~~~~~~~~~~~~li~~~~~i~GS~~g~~~d~~e  294 (339)
T COG1064         242 -L-EPSLKALRRGGTLVLVGLP-------------------------GGGPIPLLPAFLLILKEISIVGSLVGTRADLEE  294 (339)
T ss_pred             -H-HHHHHHHhcCCEEEEECCC-------------------------CCcccCCCCHHHhhhcCeEEEEEecCCHHHHHH
Confidence             2 3567789999999888611                         112222 11223445677777777788888887


Q ss_pred             HhhhhHHHHHHHHHHH-ccCCCCCCccchhhhcc---cceeEeee
Q 026360          188 IVHFFPVFMRLFTSFL-SHKSNSELKYCSYAMLR---ESRICLTD  228 (240)
Q Consensus       188 ~~~~~~~~~~~~~~~~-~g~~~~~v~~~~~~~~~---~~r~~~~~  228 (240)
                      .+..  .....|+... +--+++++|.+..+|.+   +||+++.-
T Consensus       295 ~l~f--~~~g~Ikp~i~e~~~l~~in~A~~~m~~g~v~gR~Vi~~  337 (339)
T COG1064         295 ALDF--AAEGKIKPEILETIPLDEINEAYERMEKGKVRGRAVIDM  337 (339)
T ss_pred             HHHH--HHhCCceeeEEeeECHHHHHHHHHHHHcCCeeeEEEecC
Confidence            7776  7777888888 57788889988888865   79998764

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.93  E-value=5.2e-09  Score=91.71  Aligned_cols=106  Identities=14%  Similarity=0.191  Sum_probs=77.7

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCC----CEEEEEcCCCC-ChhH-HHhcCceecCCHHhhcCcCCEEEEcCCCChhhhh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKM-DPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G----~~V~~~d~~~~-~~~~-~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~  108 (240)
                      ..++|||||+|+||.++++.|...|    .+|++++|++. ..+. ....|+....+..++++++|+|++++|.. ....
T Consensus         2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~-~~~~   80 (279)
T PRK07679          2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPK-DVAE   80 (279)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHH-HHHH
Confidence            4579999999999999999998877    68999998652 2222 23457766678888999999999999933 3333


Q ss_pred             cccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360          109 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (240)
Q Consensus       109 ~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~  144 (240)
                      ++ .+....++++.++|++.-|  ++.+.+.+.+..
T Consensus        81 vl-~~l~~~~~~~~liIs~~aG--i~~~~l~~~~~~  113 (279)
T PRK07679         81 AL-IPFKEYIHNNQLIISLLAG--VSTHSIRNLLQK  113 (279)
T ss_pred             HH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCC
Confidence            33 3455567889999998655  356666666543

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=98.92  E-value=1.3e-08  Score=100.30  Aligned_cols=138  Identities=16%  Similarity=0.146  Sum_probs=95.1

Q ss_pred             CCeEEEEccChHHHHHHHHhccCC--CEEEEEcCCCCChhHHHhcCce--ecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQLEKETGAK--FEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G--~~V~~~d~~~~~~~~~~~~g~~--~~~~l~ell~~aDiVvl~lp~~~~t~~~i~  111 (240)
                      -++|+|||+|.||.++++.++..|  .+|++||+++...+.+.+.|+.  ...+++++++++|+|++++|.. ....++ 
T Consensus         3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl-   80 (735)
T PRK14806          3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVL-   80 (735)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHH-
Confidence            368999999999999999999888  4799999987655556666653  3456788899999999999943 333333 


Q ss_pred             HHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC---------CCCCCCCCCCCeEEcCCCCC
Q 026360          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA---------PKDHPWRYMPNQAMTPHVSG  180 (240)
Q Consensus       112 ~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~---------~~~~~l~~~~nv~~TPH~a~  180 (240)
                      .+....++++.++++++..+....+.+.+.+....++     +..+-|.         ..+..++.-.+++++|+..+
T Consensus        81 ~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r-----~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~  153 (735)
T PRK14806         81 ADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAG-----FVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAET  153 (735)
T ss_pred             HHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCe-----EEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCC
Confidence            3444567889999999976544455565555432222     2223332         12335677778899997644

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=98.92  E-value=1.8e-08  Score=92.05  Aligned_cols=91  Identities=18%  Similarity=0.278  Sum_probs=69.9

Q ss_pred             CCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHH
Q 026360           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  113 (240)
Q Consensus        35 ~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~  113 (240)
                      ..++|+||| +|.||+++|+.|+..|++|.+||++..             .+.++++++||+|++|+|... +..++ .+
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~~~-~~~~~-~~  161 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSVPIHL-TEEVI-AR  161 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcHHH-HHHHH-HH
Confidence            468999999 999999999999999999999998421             256778889999999999553 34444 34


Q ss_pred             HHccCCCCCEEEEcCCCcccCHHHHHHH
Q 026360          114 RIAKMKKGVLIVNNARGAIMDTQAVVDA  141 (240)
Q Consensus       114 ~l~~mk~gailIN~srg~~vd~~aL~~a  141 (240)
                      ... +++|+++++++.-+..-..++.+.
T Consensus       162 l~~-l~~~~iv~Dv~SvK~~~~~~~~~~  188 (374)
T PRK11199        162 LPP-LPEDCILVDLTSVKNAPLQAMLAA  188 (374)
T ss_pred             HhC-CCCCcEEEECCCccHHHHHHHHHh
Confidence            444 899999999987654334444443

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.89  E-value=4.3e-08  Score=87.13  Aligned_cols=106  Identities=11%  Similarity=0.126  Sum_probs=73.7

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHH-----------HhcC-------------ceecCCHHhhcCc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-----------KETG-------------AKFEEDLDTMLPK   92 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~l~ell~~   92 (240)
                      ++|+|||.|.||.++|..+...|++|++||+++...+..           .+.|             +....++++++++
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~   82 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD   82 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence            479999999999999999999999999999975332221           1223             2455688889999


Q ss_pred             CCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (240)
Q Consensus        93 aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~  144 (240)
                      +|+|+.++|...+.+..+..+.-+..+++.++ ..+.. ......+.+.+..
T Consensus        83 ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii-~ssts-~~~~~~la~~~~~  132 (308)
T PRK06129         83 ADYVQESAPENLELKRALFAELDALAPPHAIL-ASSTS-ALLASAFTEHLAG  132 (308)
T ss_pred             CCEEEECCcCCHHHHHHHHHHHHHhCCCcceE-EEeCC-CCCHHHHHHhcCC
Confidence            99999999976555544443433334455544 33333 3456678887754

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=98.88  E-value=1.1e-08  Score=90.32  Aligned_cols=93  Identities=13%  Similarity=0.133  Sum_probs=74.9

Q ss_pred             HHHHHHHhccCCCEEEEEcCCCCCh-----hHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCC
Q 026360           48 GKLLLQRLKPFNCNLLYHDRVKMDP-----QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV  122 (240)
Q Consensus        48 G~~~A~~l~~~G~~V~~~d~~~~~~-----~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~ga  122 (240)
                      |..+|++|...|++|++||+++...     +.+.+.|+...++..++++++|+|++++|..+.++.++ ...++.+++|+
T Consensus        32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga  110 (341)
T TIGR01724        32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA  110 (341)
T ss_pred             HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence            7899999999999999999865322     23566788888889999999999999999888887776 46888999999


Q ss_pred             EEEEcCCCcccCHHHHHHHHHh
Q 026360          123 LIVNNARGAIMDTQAVVDACSS  144 (240)
Q Consensus       123 ilIN~srg~~vd~~aL~~aL~~  144 (240)
                      ++||+|+.+   .+.++..|+.
T Consensus       111 IVID~STIs---P~t~~~~~e~  129 (341)
T TIGR01724       111 VICNTCTVS---PVVLYYSLEK  129 (341)
T ss_pred             EEEECCCCC---HHHHHHHHHH
Confidence            999998655   4445444444

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.88  E-value=2e-08  Score=88.43  Aligned_cols=116  Identities=14%  Similarity=0.166  Sum_probs=81.8

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhH-----------HHhcC-------------ceecCCHHhhcCc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-----------EKETG-------------AKFEEDLDTMLPK   92 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~-----------~~~~g-------------~~~~~~l~ell~~   92 (240)
                      ++|||||.|.||..+|..+...|++|++||+++...+.           ..+.|             +...+++ +.+++
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~   84 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD   84 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence            48999999999999999999999999999998654332           12222             1245677 45799


Q ss_pred             CCEEEEcCCCChhhhhcccHHHHccC-CCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCC
Q 026360           93 CDIVVVNTPLTEKTRGMFDKDRIAKM-KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (240)
Q Consensus        93 aDiVvl~lp~~~~t~~~i~~~~l~~m-k~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~  156 (240)
                      ||+|+-++|.+.+.+..+..+.-+.+ ++++++++.+.+-.+  .++..+++. .-+..++.-|.
T Consensus        85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~--~~la~~~~~-~~r~~g~hf~~  146 (286)
T PRK07819         85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPI--MKLAAATKR-PGRVLGLHFFN  146 (286)
T ss_pred             CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCH--HHHHhhcCC-CccEEEEecCC
Confidence            99999999999888888776555555 889999887766444  444444432 22234555443

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.86  E-value=8.9e-09  Score=90.80  Aligned_cols=80  Identities=23%  Similarity=0.343  Sum_probs=67.5

Q ss_pred             ccccCCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      +.++.||+|+|||.| .||+.+|..|...|+.|++|++..              .++.++.++||+|+++++..    +.
T Consensus       154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t--------------~~l~e~~~~ADIVIsavg~~----~~  215 (301)
T PRK14194        154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS--------------TDAKALCRQADIVVAAVGRP----RL  215 (301)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhcCCEEEEecCCh----hc
Confidence            457999999999996 999999999999999999998643              16888999999999999843    34


Q ss_pred             ccHHHHccCCCCCEEEEcCCCc
Q 026360          110 FDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg~  131 (240)
                      +....   +|+|+++||+|-..
T Consensus       216 v~~~~---ik~GaiVIDvgin~  234 (301)
T PRK14194        216 IDADW---LKPGAVVIDVGINR  234 (301)
T ss_pred             ccHhh---ccCCcEEEEecccc
Confidence            55443   79999999999554

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.86  E-value=7.9e-08  Score=84.29  Aligned_cols=105  Identities=15%  Similarity=0.194  Sum_probs=77.2

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChh-----------HHHhcC-------------ceecCCHHhhcCc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-----------LEKETG-------------AKFEEDLDTMLPK   92 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~-----------~~~~~g-------------~~~~~~l~ell~~   92 (240)
                      ++|+|||.|.||..+|..+...|++|+++|+++...+           ...+.|             +...++.++ +++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~~   82 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-LKD   82 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hcc
Confidence            5799999999999999999999999999998754332           111222             233446654 789


Q ss_pred             CCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (240)
Q Consensus        93 aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~  144 (240)
                      ||+|+.++|.....+.-+..+..+.++++++++....|  +....+.+.+..
T Consensus        83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~  132 (282)
T PRK05808         83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKR  132 (282)
T ss_pred             CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCC
Confidence            99999999977666655656677778999988554444  566688888743

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=98.86  E-value=8.3e-09  Score=91.72  Aligned_cols=94  Identities=18%  Similarity=0.229  Sum_probs=72.0

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc--------------CceecCCHHhhcCcCCEEEEcCCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------------GAKFEEDLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~--------------g~~~~~~l~ell~~aDiVvl~lp~  102 (240)
                      ++|+|||+|.||..+|..|...|++|.+|++++...+.....              +.....+.++.++++|+|++++|.
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~   81 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS   81 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence            479999999999999999999999999999875443333332              344456788889999999999995


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEEcCCCcc
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVNNARGAI  132 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN~srg~~  132 (240)
                       ..+..++ .+....+++++++|+++.|--
T Consensus        82 -~~~~~v~-~~l~~~~~~~~~vi~~~ngv~  109 (325)
T PRK00094         82 -QALREVL-KQLKPLLPPDAPIVWATKGIE  109 (325)
T ss_pred             -HHHHHHH-HHHHhhcCCCCEEEEEeeccc
Confidence             4445544 355566788999999986543

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.86  E-value=1.6e-08  Score=95.48  Aligned_cols=106  Identities=13%  Similarity=0.128  Sum_probs=78.0

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH-------------------hcC-ceecCCHHhhcCcCCEE
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-------------------ETG-AKFEEDLDTMLPKCDIV   96 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~-------------------~~g-~~~~~~l~ell~~aDiV   96 (240)
                      ++|||||.|.||..+|..+...|++|++||+++...+...                   ..| +...+++++++++||+|
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V   84 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI   84 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence            5899999999999999999999999999999764432211                   112 45667898999999999


Q ss_pred             EEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360           97 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (240)
Q Consensus        97 vl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~  144 (240)
                      +.++|...+.+..+..+.-+.++++++| .++..++ +...+.+.+..
T Consensus        85 ieavpe~~~vk~~l~~~l~~~~~~~~iI-~SsTsgi-~~s~l~~~~~~  130 (495)
T PRK07531         85 QESVPERLDLKRRVLAEIDAAARPDALI-GSSTSGF-LPSDLQEGMTH  130 (495)
T ss_pred             EEcCcCCHHHHHHHHHHHHhhCCCCcEE-EEcCCCC-CHHHHHhhcCC
Confidence            9999977766665555555567777655 4444443 35577777754

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=98.85  E-value=1.9e-08  Score=92.28  Aligned_cols=129  Identities=13%  Similarity=0.114  Sum_probs=87.6

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh----------------cCce--ecCCHHhhcCcCCEEEE
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE----------------TGAK--FEEDLDTMLPKCDIVVV   98 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~----------------~g~~--~~~~l~ell~~aDiVvl   98 (240)
                      ++|+|||+|.||..+|..+. .|++|++||+++...+...+                .+..  ...+..++.++||+|++
T Consensus         1 mkI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii   79 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII   79 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence            47999999999999997776 49999999997644333322                1222  22346777899999999


Q ss_pred             cCCCCh----------hhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCCC---CC
Q 026360           99 NTPLTE----------KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKD---HP  165 (240)
Q Consensus        99 ~lp~~~----------~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~---~~  165 (240)
                      |+|...          ..+..+ ++... +++|.++|+.|+-.+=..+.+.+.+.+.++.      |.+|...+.   +.
T Consensus        80 ~Vpt~~~~k~~~~dl~~v~~v~-~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~------~~PE~l~~G~a~~d  151 (388)
T PRK15057         80 ATPTDYDPKTNYFNTSSVESVI-KDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENII------FSPEFLREGKALYD  151 (388)
T ss_pred             eCCCCCccCCCCcChHHHHHHH-HHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEE------ECcccccCCccccc
Confidence            999541          112222 23444 7999999999999998999999888764433      356655443   33


Q ss_pred             CCCCCCeEE
Q 026360          166 WRYMPNQAM  174 (240)
Q Consensus       166 l~~~~nv~~  174 (240)
                      +...|.+++
T Consensus       152 ~~~p~rvv~  160 (388)
T PRK15057        152 NLHPSRIVI  160 (388)
T ss_pred             ccCCCEEEE
Confidence            444445443

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.84  E-value=7.5e-08  Score=84.85  Aligned_cols=105  Identities=17%  Similarity=0.216  Sum_probs=76.5

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh--------------cC-------------ceecCCHHhh
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--------------TG-------------AKFEEDLDTM   89 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~--------------~g-------------~~~~~~l~el   89 (240)
                      ++|+|||.|.||..+|..+...|++|++||+++...+...+              .|             +...+++ +.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~   82 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES   82 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence            58999999999999999999999999999987643321110              01             1233345 56


Q ss_pred             cCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360           90 LPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (240)
Q Consensus        90 l~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~  144 (240)
                      +++||+|+.++|...+.+..+-++.-+.++++++|++...|  +....+.+.+..
T Consensus        83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~  135 (291)
T PRK06035         83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALER  135 (291)
T ss_pred             hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCC
Confidence            78999999999976655555555565668899999877766  466777777743

>PRK07680 late competence protein ComER; Validated

Probab=98.83  E-value=1.9e-08  Score=87.90  Aligned_cols=103  Identities=12%  Similarity=0.269  Sum_probs=76.2

Q ss_pred             CeEEEEccChHHHHHHHHhccCCC----EEEEEcCCCCChhHHHh-c-CceecCCHHhhcCcCCEEEEcCCCChhhhhcc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNC----NLLYHDRVKMDPQLEKE-T-GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~----~V~~~d~~~~~~~~~~~-~-g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i  110 (240)
                      ++|||||+|.||..++..|...|.    +|.+++|++........ . |+....+.++++.++|+|++++| ......++
T Consensus         1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~~~~vl   79 (273)
T PRK07680          1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLDIYPLL   79 (273)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHHHHHHH
Confidence            379999999999999999988883    79999997544333322 2 56666688888999999999998 22334443


Q ss_pred             cHHHHccCCCCCEEEEcCCCcccCHHHHHHHHH
Q 026360          111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  143 (240)
Q Consensus       111 ~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~  143 (240)
                       ++....++++.++|+++-|  +..+.|.+.+.
T Consensus        80 -~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~  109 (273)
T PRK07680         80 -QKLAPHLTDEHCLVSITSP--ISVEQLETLVP  109 (273)
T ss_pred             -HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence             3455567888999999855  37777776665

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.82  E-value=1.5e-08  Score=88.69  Aligned_cols=109  Identities=19%  Similarity=0.147  Sum_probs=79.9

Q ss_pred             CCCeEEEEccChHHHHHHHHhcc--CCCEEE-EEcCCCCChh-HHHhcCc-eecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKP--FNCNLL-YHDRVKMDPQ-LEKETGA-KFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~--~G~~V~-~~d~~~~~~~-~~~~~g~-~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      ..++|||||+|.||+.+++.+..  .++++. ++|+++...+ .+...|. ..+.+++++++++|+|++|+|....  .-
T Consensus         5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h--~e   82 (271)
T PRK13302          5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL--RA   82 (271)
T ss_pred             CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH--HH
Confidence            45799999999999999999985  478865 6787653332 2334453 4567899999999999999994322  22


Q ss_pred             ccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360          110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      +.   ...++.|.-++..+.|.+.+.++|.++.++++..
T Consensus        83 ~~---~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~  118 (271)
T PRK13302         83 IV---EPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ  118 (271)
T ss_pred             HH---HHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence            22   2334667767778899888899999999886655

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.80  E-value=2.6e-08  Score=88.47  Aligned_cols=105  Identities=13%  Similarity=0.215  Sum_probs=73.1

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-----cC--------------ceecCCHHhhcCcCCEEE
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----TG--------------AKFEEDLDTMLPKCDIVV   97 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-----~g--------------~~~~~~l~ell~~aDiVv   97 (240)
                      ++|+|||.|.||..+|..+...|++|++||+++...+...+     .+              +....++++.+++||+|+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi   84 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI   84 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence            58999999999999999999999999999986543332221     11              234457888899999999


Q ss_pred             EcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHH
Q 026360           98 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  143 (240)
Q Consensus        98 l~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~  143 (240)
                      +++|...+....+..+.-..++++++++....|  +....+.+.+.
T Consensus        85 ~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~  128 (311)
T PRK06130         85 EAVPEKLELKRDVFARLDGLCDPDTIFATNTSG--LPITAIAQAVT  128 (311)
T ss_pred             EeccCcHHHHHHHHHHHHHhCCCCcEEEECCCC--CCHHHHHhhcC
Confidence            999966543333333444446777776544444  34567777764

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=98.80  E-value=1.6e-08  Score=94.38  Aligned_cols=112  Identities=11%  Similarity=0.070  Sum_probs=95.6

Q ss_pred             HHHHHHHHhccCCCEEEEEcCCCCChhHHHhc-----CceecCCHHhhcCc---CCEEEEcCCCChhhhhcccHHHHccC
Q 026360           47 IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-----GAKFEEDLDTMLPK---CDIVVVNTPLTEKTRGMFDKDRIAKM  118 (240)
Q Consensus        47 iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~-----g~~~~~~l~ell~~---aDiVvl~lp~~~~t~~~i~~~~l~~m  118 (240)
                      ||+.+|++|...|++|.+|||++.+.+.+.+.     |+....+++++++.   +|+|++++|..+.+..++ .+.+..+
T Consensus         1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l   79 (459)
T PRK09287          1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL   79 (459)
T ss_pred             CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence            79999999999999999999987655555442     46777899998875   899999999998888888 4688899


Q ss_pred             CCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 026360          119 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (240)
Q Consensus       119 k~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP  159 (240)
                      .+|.++||++....-|...+.+.+++..+.+...-|...++
T Consensus        80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~  120 (459)
T PRK09287         80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEE  120 (459)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHH
Confidence            99999999999999999999999999999877766666544

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.80  E-value=2.8e-08  Score=94.11  Aligned_cols=115  Identities=20%  Similarity=0.187  Sum_probs=85.4

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHH-----------HhcC-------------ceecCCHHhhcCc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-----------KETG-------------AKFEEDLDTMLPK   92 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~l~ell~~   92 (240)
                      ++|||||.|.||..+|..+...|++|++||+++...+..           .+.|             +....++++ +.+
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~   86 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD   86 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence            689999999999999999999999999999986543331           2234             355567766 569


Q ss_pred             CCEEEEcCCCChhhhhcccHHHHccCCCCCEE-EEcCCCcccCHHHHHHHHHhCCccEEEeeCCC
Q 026360           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLI-VNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (240)
Q Consensus        93 aDiVvl~lp~~~~t~~~i~~~~l~~mk~gail-IN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~  156 (240)
                      ||+|+-++|.+.+.+..+..+.-..+++++++ +|+|.-++   .++.++++. .=+..++..|.
T Consensus        87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~-p~r~~G~hff~  147 (507)
T PRK08268         87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKH-PERVAGLHFFN  147 (507)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCC-cccEEEEeecC
Confidence            99999999998888888776666667899999 59987666   356666653 22234555444

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=98.78  E-value=5.3e-09  Score=81.31  Aligned_cols=92  Identities=20%  Similarity=0.322  Sum_probs=57.2

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEE-cCCCCChhHHHh-cCceecCCHHhhcCcCCEEEEcCCCChhhhhcccH
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH-DRVKMDPQLEKE-TGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~-d~~~~~~~~~~~-~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~  112 (240)
                      .-.+|||||.|++|..+++.|...|++|..+ +|+....+.+.. .+...+.+++++++++|++++++|++. ... +-+
T Consensus         9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDda-I~~-va~   86 (127)
T PF10727_consen    9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDA-IAE-VAE   86 (127)
T ss_dssp             ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCH-HHH-HHH
T ss_pred             CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHH-HHH-HHH
Confidence            4679999999999999999999999998765 565433333332 333444578899999999999999663 222 233


Q ss_pred             HHHcc--CCCCCEEEEcC
Q 026360          113 DRIAK--MKKGVLIVNNA  128 (240)
Q Consensus       113 ~~l~~--mk~gailIN~s  128 (240)
                      +.-..  .++|.+++.+|
T Consensus        87 ~La~~~~~~~g~iVvHtS  104 (127)
T PF10727_consen   87 QLAQYGAWRPGQIVVHTS  104 (127)
T ss_dssp             HHHCC--S-TT-EEEES-
T ss_pred             HHHHhccCCCCcEEEECC
Confidence            44443  68999999996

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.78  E-value=1.5e-08  Score=81.44  Aligned_cols=92  Identities=23%  Similarity=0.344  Sum_probs=65.0

Q ss_pred             eEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc--------------CceecCCHHhhcCcCCEEEEcCCCC
Q 026360           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------------GAKFEEDLDTMLPKCDIVVVNTPLT  103 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~--------------g~~~~~~l~ell~~aDiVvl~lp~~  103 (240)
                      +|+|+|.|++|.++|..|...|.+|..|++++...+.....              .+...++++++++++|+|++++|..
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~   80 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ   80 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence            68999999999999999999999999999875322222211              1234578999999999999999932


Q ss_pred             hhhhhcccHHHHccCCCCCEEEEcCCCc
Q 026360          104 EKTRGMFDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       104 ~~t~~~i~~~~l~~mk~gailIN~srg~  131 (240)
                       ..+. +-++....++++..+|++..|-
T Consensus        81 -~~~~-~~~~l~~~l~~~~~ii~~~KG~  106 (157)
T PF01210_consen   81 -AHRE-VLEQLAPYLKKGQIIISATKGF  106 (157)
T ss_dssp             -GHHH-HHHHHTTTSHTT-EEEETS-SE
T ss_pred             -HHHH-HHHHHhhccCCCCEEEEecCCc
Confidence             2233 3345666678899999998763

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.78  E-value=2.8e-08  Score=86.08  Aligned_cols=103  Identities=14%  Similarity=0.250  Sum_probs=75.4

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCE---EEEEcCCCCChhHHHh-c-CceecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCN---LLYHDRVKMDPQLEKE-T-GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~---V~~~d~~~~~~~~~~~-~-g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~  111 (240)
                      ++|||||+|+||+++++.|...|..   +.++++++.+.+.... . ++....+.+++++++|+|++++| ......++.
T Consensus         1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~   79 (258)
T PRK06476          1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLR   79 (258)
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHH
Confidence            3799999999999999999887754   5788886544333333 3 45666788899999999999999 333444432


Q ss_pred             HHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhC
Q 026360          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (240)
Q Consensus       112 ~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g  145 (240)
                       + +. ++++.++|+++  .-+..+.|.+.+..+
T Consensus        80 -~-l~-~~~~~~vis~~--ag~~~~~l~~~~~~~  108 (258)
T PRK06476         80 -A-LR-FRPGQTVISVI--AATDRAALLEWIGHD  108 (258)
T ss_pred             -H-hc-cCCCCEEEEEC--CCCCHHHHHHHhCCC
Confidence             2 32 57889999987  447888888888654

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.77  E-value=5.3e-08  Score=92.07  Aligned_cols=116  Identities=16%  Similarity=0.091  Sum_probs=84.3

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHH-----------HhcC-------------ceecCCHHhhcC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-----------KETG-------------AKFEEDLDTMLP   91 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~l~ell~   91 (240)
                      =++|||||.|.||..+|..+...|++|++||+++...+..           .+.|             +....++++ +.
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~   83 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LA   83 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hC
Confidence            3679999999999999999999999999999976443321           1123             234567766 56


Q ss_pred             cCCEEEEcCCCChhhhhcccHHHHccCCCCCEEE-EcCCCcccCHHHHHHHHHhCCccEEEeeCCC
Q 026360           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (240)
Q Consensus        92 ~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailI-N~srg~~vd~~aL~~aL~~g~i~ga~lDV~~  156 (240)
                      +||+|+.++|...+.+..+..+.-+.++++++|. |+|.-++   ..+.++++. .....++.-|.
T Consensus        84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~-p~r~~G~HFf~  145 (503)
T TIGR02279        84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLAR-PERVAGLHFFN  145 (503)
T ss_pred             CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCc-ccceEEEeccC
Confidence            9999999999888888877666666788888776 6665443   467777643 33445666554

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.76  E-value=9.2e-09  Score=80.75  Aligned_cols=94  Identities=26%  Similarity=0.378  Sum_probs=69.1

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCCCChhH-HHhcC---c--eecCCHHhhcCcCCEEEEcCCCChh
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQL-EKETG---A--KFEEDLDTMLPKCDIVVVNTPLTEK  105 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~~~~~~-~~~~g---~--~~~~~l~ell~~aDiVvl~lp~~~~  105 (240)
                      +++|+++.|||.|.+|+.++..|...|++ |++++|+..+.+. +..++   +  ...+++.+.+.++|+|+.++|... 
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~-   87 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGM-   87 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTS-
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCC-
Confidence            68999999999999999999999999997 9999997543332 23331   2  234566677899999999998543 


Q ss_pred             hhhcccHHHHccCCCCC-EEEEcCC
Q 026360          106 TRGMFDKDRIAKMKKGV-LIVNNAR  129 (240)
Q Consensus       106 t~~~i~~~~l~~mk~ga-ilIN~sr  129 (240)
                        ..+.++.++..++.. +++|++.
T Consensus        88 --~~i~~~~~~~~~~~~~~v~Dla~  110 (135)
T PF01488_consen   88 --PIITEEMLKKASKKLRLVIDLAV  110 (135)
T ss_dssp             --TSSTHHHHTTTCHHCSEEEES-S
T ss_pred             --cccCHHHHHHHHhhhhceecccc
Confidence              367777777665543 7888763

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=98.74  E-value=3.6e-08  Score=86.12  Aligned_cols=90  Identities=22%  Similarity=0.350  Sum_probs=72.6

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCC-ChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM-DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~-~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~  111 (240)
                      -|.||+|+|||||+-|++-|..|+..|.+|++--|... +.+.+.+.|++.. +.+|+.++||+|++.+|+.. ...++.
T Consensus        15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~-~v~ea~k~ADvim~L~PDe~-q~~vy~   92 (338)
T COG0059          15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVY-TVEEAAKRADVVMILLPDEQ-QKEVYE   92 (338)
T ss_pred             HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEee-cHHHHhhcCCEEEEeCchhh-HHHHHH
Confidence            48999999999999999999999999999776655433 3566777788755 99999999999999999543 344556


Q ss_pred             HHHHccCCCCCEE
Q 026360          112 KDRIAKMKKGVLI  124 (240)
Q Consensus       112 ~~~l~~mk~gail  124 (240)
                      ++.-..|+.|+.+
T Consensus        93 ~~I~p~Lk~G~aL  105 (338)
T COG0059          93 KEIAPNLKEGAAL  105 (338)
T ss_pred             HHhhhhhcCCceE
Confidence            6777788888854

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.72  E-value=6.4e-08  Score=78.82  Aligned_cols=82  Identities=28%  Similarity=0.380  Sum_probs=69.4

Q ss_pred             cccCCCeEEEEccChH-HHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcc
Q 026360           32 YDLEGKTVGTVGCGRI-GKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~i-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i  110 (240)
                      .++.|+++.|||.|.+ |..+|+.|...|.+|++.+++.              .++.+.+.++|+|+.+++..    +++
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~----~ii  101 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKP----GLV  101 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCC----cee
Confidence            3689999999999996 8889999999999999999752              36778899999999999832    367


Q ss_pred             cHHHHccCCCCCEEEEcCCCcccC
Q 026360          111 DKDRIAKMKKGVLIVNNARGAIMD  134 (240)
Q Consensus       111 ~~~~l~~mk~gailIN~srg~~vd  134 (240)
                      ..+.   ++++.++||+|...-+|
T Consensus       102 ~~~~---~~~~~viIDla~prdvd  122 (168)
T cd01080         102 KGDM---VKPGAVVIDVGINRVPD  122 (168)
T ss_pred             cHHH---ccCCeEEEEccCCCccc
Confidence            7764   57899999999888777

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.69  E-value=5.8e-08  Score=84.28  Aligned_cols=101  Identities=16%  Similarity=0.228  Sum_probs=71.9

Q ss_pred             CeEEEEccChHHHHHHHHhccCC---CEEEEEcCCCCChhHHHh-cCceecCCHHhhcCcCCEEEEcCCCChhhhhcccH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFN---CNLLYHDRVKMDPQLEKE-TGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G---~~V~~~d~~~~~~~~~~~-~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~  112 (240)
                      ++|+|||+|.||..++..+...|   .+|.+++|++...+.... .|+....+.++++.++|+|++++|.. ....++ +
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~-~~~~v~-~   80 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQ-VMEEVL-S   80 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHH-HHHHHH-H
Confidence            58999999999999999998888   789999997644444443 46666668888899999999999832 233332 2


Q ss_pred             HHHccCCCCCEEEEcCCCcccCHHHHHHHHH
Q 026360          113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACS  143 (240)
Q Consensus       113 ~~l~~mk~gailIN~srg~~vd~~aL~~aL~  143 (240)
                      +....+  +.++|++.-|-  ..+.+.+.+.
T Consensus        81 ~l~~~~--~~~vvs~~~gi--~~~~l~~~~~  107 (267)
T PRK11880         81 ELKGQL--DKLVVSIAAGV--TLARLERLLG  107 (267)
T ss_pred             HHHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence            222223  46788887653  5666766654

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.68  E-value=1.3e-07  Score=82.86  Aligned_cols=103  Identities=14%  Similarity=0.269  Sum_probs=73.6

Q ss_pred             CeEEEEccChHHHHHHHHhccCC----CEEEEEcCCCCC-hhHH-Hhc-CceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKMD-PQLE-KET-GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G----~~V~~~d~~~~~-~~~~-~~~-g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      ++|+|||+|.||.++++.+...|    .+|.+|+++... .... ... ++....+.+++++++|+|++++|. .....+
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp-~~~~~v   80 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPP-LAVLPL   80 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCH-HHHHHH
Confidence            47999999999999999998877    679999875422 1111 222 234446788889999999999992 223333


Q ss_pred             ccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHH
Q 026360          110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  143 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~  143 (240)
                      + .+....++++.++|.+.-|  ++.+.|.+.+.
T Consensus        81 l-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~  111 (277)
T PRK06928         81 L-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITP  111 (277)
T ss_pred             H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence            3 3444456788899999888  67778887764

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.67  E-value=8.6e-08  Score=84.61  Aligned_cols=79  Identities=25%  Similarity=0.357  Sum_probs=65.6

Q ss_pred             ccccCCCeEEEEc-cChHHHHHHHHhccCCCEEEEEc-CCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhh
Q 026360           31 AYDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHD-RVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (240)
Q Consensus        31 ~~~l~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d-~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~  108 (240)
                      +.++.||+|+||| .|.||+.+|.+|...|+.|++|+ ++.               ++++++++||+|+++++..+    
T Consensus       153 ~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~----  213 (296)
T PRK14188        153 HGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPE----  213 (296)
T ss_pred             CCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChh----
Confidence            3478999999999 99999999999999999999996 432               46888999999999998543    


Q ss_pred             cccHHHHccCCCCCEEEEcCCCc
Q 026360          109 MFDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       109 ~i~~~~l~~mk~gailIN~srg~  131 (240)
                      .+....   +|+|+++||+|--.
T Consensus       214 ~v~~~~---lk~GavVIDvGin~  233 (296)
T PRK14188        214 MVKGDW---IKPGATVIDVGINR  233 (296)
T ss_pred             hcchhe---ecCCCEEEEcCCcc
Confidence            444333   89999999998544

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=98.67  E-value=1.1e-07  Score=82.61  Aligned_cols=99  Identities=19%  Similarity=0.339  Sum_probs=78.5

Q ss_pred             CeEEEEccChHHHHHHHHhccCC----CEEEEEcCCCCChh-HHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKMDPQ-LEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G----~~V~~~d~~~~~~~-~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~  111 (240)
                      ++|||||+|+||++++..|...|    .+|++.+|+..... ....+|+....+.+++..++|+|++++.  |+.    -
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK--Pq~----~   75 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK--PQD----L   75 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC--hHh----H
Confidence            58999999999999999999888    57999999875554 5667777656677899999999999996  332    2


Q ss_pred             HHHHccCC---CCCEEEEcCCCcccCHHHHHHHHH
Q 026360          112 KDRIAKMK---KGVLIVNNARGAIMDTQAVVDACS  143 (240)
Q Consensus       112 ~~~l~~mk---~gailIN~srg~~vd~~aL~~aL~  143 (240)
                      .+.++.++   ++.++|.++-|  +..+.|.+++.
T Consensus        76 ~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~  108 (266)
T COG0345          76 EEVLSKLKPLTKDKLVISIAAG--VSIETLERLLG  108 (266)
T ss_pred             HHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcC
Confidence            34555555   68999999987  67777887775

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.64  E-value=1.2e-07  Score=83.20  Aligned_cols=81  Identities=21%  Similarity=0.273  Sum_probs=68.2

Q ss_pred             ccccCCCeEEEEccChH-HHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           31 AYDLEGKTVGTVGCGRI-GKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~i-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      +.++.||++.|||.|.+ |+.+|..|...|+.|++++..              ..++.+.+++||+|++++|    ..++
T Consensus       153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~--------------t~~l~~~~~~ADIVV~avG----~~~~  214 (285)
T PRK14189        153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK--------------TRDLAAHTRQADIVVAAVG----KRNV  214 (285)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC--------------CCCHHHHhhhCCEEEEcCC----CcCc
Confidence            45789999999999988 999999999999999987642              2378889999999999998    4567


Q ss_pred             ccHHHHccCCCCCEEEEcCCCcc
Q 026360          110 FDKDRIAKMKKGVLIVNNARGAI  132 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg~~  132 (240)
                      ++.+   .+|+|+++||+|...+
T Consensus       215 i~~~---~ik~gavVIDVGin~~  234 (285)
T PRK14189        215 LTAD---MVKPGATVIDVGMNRD  234 (285)
T ss_pred             cCHH---HcCCCCEEEEcccccc
Confidence            7764   4799999999996543

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.61  E-value=2.4e-07  Score=79.28  Aligned_cols=106  Identities=13%  Similarity=0.248  Sum_probs=71.5

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCC---CE-EEEEcCC-CCChhH-HHhcCceecCCHHhhcCcCCEEEEcCCCChhhhh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFN---CN-LLYHDRV-KMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G---~~-V~~~d~~-~~~~~~-~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~  108 (240)
                      .+++|+|||.|.||+.++..+...|   .+ +++++++ +...+. ....++....+.+++++++|+|++++|.. ..+.
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~-~~~~   81 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPS-AHEE   81 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHH-HHHH
Confidence            4678999999999999999987665   23 6677764 222222 23356666678889999999999999932 2233


Q ss_pred             cccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhC
Q 026360          109 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (240)
Q Consensus       109 ~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g  145 (240)
                      ++ ++.-..++ +.++|+++-|  ++.+.|.+.+..+
T Consensus        82 v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~  114 (245)
T PRK07634         82 LL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG  114 (245)
T ss_pred             HH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence            22 22222233 5789999877  5666677766543

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=98.60  E-value=2.6e-07  Score=83.35  Aligned_cols=95  Identities=13%  Similarity=0.140  Sum_probs=74.6

Q ss_pred             HHHHHHHhccCCCEEEEEcCCCC-----ChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCC
Q 026360           48 GKLLLQRLKPFNCNLLYHDRVKM-----DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV  122 (240)
Q Consensus        48 G~~~A~~l~~~G~~V~~~d~~~~-----~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~ga  122 (240)
                      |..+|..|...|++|++||+++.     ..+.....|+....+..++++++|+|++++|....++.++ ......+++++
T Consensus        32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g~  110 (342)
T PRK12557         32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPENA  110 (342)
T ss_pred             HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCCC
Confidence            78899999989999999998753     1223445677777788899999999999999665466666 36777889999


Q ss_pred             EEEEcCCCcccCH-HHHHHHHH
Q 026360          123 LIVNNARGAIMDT-QAVVDACS  143 (240)
Q Consensus       123 ilIN~srg~~vd~-~aL~~aL~  143 (240)
                      ++||++.++.... +.+.+.+.
T Consensus       111 IVId~ST~~~~~~s~~l~~~l~  132 (342)
T PRK12557        111 VICNTCTVSPVVLYYSLEGELR  132 (342)
T ss_pred             EEEEecCCCHHHHHHHHHHHhc
Confidence            9999999887665 56666664

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.59  E-value=1.9e-07  Score=81.79  Aligned_cols=80  Identities=24%  Similarity=0.325  Sum_probs=66.3

Q ss_pred             ccccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        31 ~~~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      +.++.||+++|||. |.+|+.+|..|...|+.|++|...              ..++++.+++||+|+++++..    +.
T Consensus       153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~--------------t~~l~~~~~~ADIVI~avg~~----~~  214 (284)
T PRK14179        153 NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR--------------TRNLAEVARKADILVVAIGRG----HF  214 (284)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEecCcc----cc
Confidence            45799999999999 999999999999999999998431              126888999999999999843    44


Q ss_pred             ccHHHHccCCCCCEEEEcCCCc
Q 026360          110 FDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg~  131 (240)
                      +..+.   +|+|+++||+|-..
T Consensus       215 v~~~~---ik~GavVIDvgin~  233 (284)
T PRK14179        215 VTKEF---VKEGAVVIDVGMNR  233 (284)
T ss_pred             CCHHH---ccCCcEEEEeccee
Confidence            55543   89999999998554

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=98.56  E-value=2.1e-07  Score=82.54  Aligned_cols=140  Identities=14%  Similarity=0.211  Sum_probs=99.6

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcC-cCCEEEEcCCCChhhhhcccHH
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP-KCDIVVVNTPLTEKTRGMFDKD  113 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~-~aDiVvl~lp~~~~t~~~i~~~  113 (240)
                      .-++|||||+|++|+-+|..+...|+.|+.+||+. -.+.+...|....+.+.++++ +.|+|++|+.- ..+..++-.-
T Consensus        51 ~tl~IaIIGfGnmGqflAetli~aGh~li~hsRsd-yssaa~~yg~~~ft~lhdlcerhpDvvLlctsi-lsiekilaty  128 (480)
T KOG2380|consen   51 ATLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD-YSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSI-LSIEKILATY  128 (480)
T ss_pred             cceEEEEEecCcHHHHHHHHHHhcCceeEecCcch-hHHHHHHhcccccccHHHHHhcCCCEEEEEehh-hhHHHHHHhc
Confidence            45789999999999999999999999999999965 555566778877788888874 59999999852 2233443333


Q ss_pred             HHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCC-CCCCCCCCCCCCCCCeEEcCCCC
Q 026360          114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN-PQPAPKDHPWRYMPNQAMTPHVS  179 (240)
Q Consensus       114 ~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~-~EP~~~~~~l~~~~nv~~TPH~a  179 (240)
                      -++++|.|++++++-.-....-.++.+.|-+.--.   +-+.. ..|...+|.+..+|=|+.--.++
T Consensus       129 pfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDI---lctHpmfGPksvnh~wqglpfVydkvRig  192 (480)
T KOG2380|consen  129 PFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDI---LCTHPMFGPKSVNHEWQGLPFVYDKVRIG  192 (480)
T ss_pred             CchhhccceeEeeeeecchhHHHHHHHhCccccce---EeecCCcCCCcCCCccccCceEEEEeecc
Confidence            35668999999999988888888888888552111   11111 13444566666677565554443

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=98.56  E-value=3e-07  Score=80.18  Aligned_cols=107  Identities=21%  Similarity=0.302  Sum_probs=72.6

Q ss_pred             CeEEEEccChHHHHHHHHhccC--CCE-EEEEcCCCCChhH-HHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPF--NCN-LLYHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~--G~~-V~~~d~~~~~~~~-~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~  112 (240)
                      ++|||||+|.||+.+++.+...  +++ +.++|+++...+. .+..+...+.++++++.++|+|+.|+|.  ....-+. 
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~--~~~~~~~-   78 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASV--NAVEEVV-   78 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCCh--HHHHHHH-
Confidence            4899999999999999998765  566 4567886533332 2344566667899999999999999973  2221112 


Q ss_pred             HHHccCCCCCEEEEcCCCcccCH---HHHHHHHHhCCcc
Q 026360          113 DRIAKMKKGVLIVNNARGAIMDT---QAVVDACSSGHIA  148 (240)
Q Consensus       113 ~~l~~mk~gailIN~srg~~vd~---~aL~~aL~~g~i~  148 (240)
                        ...++.|.-++.++.|.+.|.   +.|.++.++++..
T Consensus        79 --~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~  115 (265)
T PRK13304         79 --PKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCK  115 (265)
T ss_pred             --HHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCE
Confidence              223455666677787877764   4566777665543

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.54  E-value=3.1e-07  Score=86.56  Aligned_cols=96  Identities=18%  Similarity=0.251  Sum_probs=75.7

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec--CC-------------------------
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--ED-------------------------   85 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~--~~-------------------------   85 (240)
                      .+.+.++.|+|+|.+|...++.++.+|..|+++|+++...+.++.+|...+  +.                         
T Consensus       161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~  240 (511)
T TIGR00561       161 KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL  240 (511)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence            356789999999999999999999999999999988766666666776531  10                         


Q ss_pred             HHhhcCcCCEEEEcC--CCChhhhhcccHHHHccCCCCCEEEEcCC
Q 026360           86 LDTMLPKCDIVVVNT--PLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus        86 l~ell~~aDiVvl~l--p~~~~t~~~i~~~~l~~mk~gailIN~sr  129 (240)
                      +.+.++++|+|+.++  |..+ ...++.++.++.||+|+++||++-
T Consensus       241 ~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA~  285 (511)
T TIGR00561       241 FAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLAA  285 (511)
T ss_pred             HHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEeee
Confidence            345578899998887  3211 235788899999999999999973

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.51  E-value=4.9e-07  Score=79.43  Aligned_cols=80  Identities=24%  Similarity=0.393  Sum_probs=67.3

Q ss_pred             ccccCCCeEEEEccCh-HHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~-iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      +.++.|+++.|||.|. +|+.+|..|...|+.|++++++.              .++.+.+++||+|+.+++.    .++
T Consensus       153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~----p~~  214 (286)
T PRK14175        153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGK----PGL  214 (286)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCC----Ccc
Confidence            3479999999999998 99999999999999999988632              2678889999999999983    346


Q ss_pred             ccHHHHccCCCCCEEEEcCCCc
Q 026360          110 FDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg~  131 (240)
                      +..+.   +|+|+++||+|-..
T Consensus       215 i~~~~---vk~gavVIDvGi~~  233 (286)
T PRK14175        215 VTKDV---VKEGAVIIDVGNTP  233 (286)
T ss_pred             cCHHH---cCCCcEEEEcCCCc
Confidence            77654   68999999999644

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=98.50  E-value=6e-07  Score=80.57  Aligned_cols=107  Identities=18%  Similarity=0.281  Sum_probs=75.4

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCce-----------------ecCCHHhhcCcCCEEEEc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-----------------FEEDLDTMLPKCDIVVVN   99 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-----------------~~~~l~ell~~aDiVvl~   99 (240)
                      ++|+|||.|.||..+|..|...|++|.++++++. .+...+.|..                 ...+. +.++.+|+|+++
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~   80 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVT   80 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEE
Confidence            5799999999999999999999999999998542 2333333322                 12234 567899999999


Q ss_pred             CCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360          100 TPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       100 lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      +|.. .....+ .+....++++.++|.+.. ++-..+.+.+.+...++.
T Consensus        81 vk~~-~~~~~~-~~l~~~~~~~~iii~~~n-G~~~~~~l~~~~~~~~~~  126 (341)
T PRK08229         81 VKSA-ATADAA-AALAGHARPGAVVVSFQN-GVRNADVLRAALPGATVL  126 (341)
T ss_pred             ecCc-chHHHH-HHHHhhCCCCCEEEEeCC-CCCcHHHHHHhCCCCcEE
Confidence            9853 334433 455666788999988865 445566777777665543

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=98.50  E-value=1e-06  Score=77.46  Aligned_cols=108  Identities=12%  Similarity=0.158  Sum_probs=74.8

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCce-----------ecCCHHhhcCcCCEEEEcCCCChh
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-----------FEEDLDTMLPKCDIVVVNTPLTEK  105 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-----------~~~~l~ell~~aDiVvl~lp~~~~  105 (240)
                      ++|+|||.|.||..+|..|...|++|+++++++...+.....|..           ...+.+++ +.+|+|++++|.. +
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~   78 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-Q   78 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-c
Confidence            479999999999999999999999999999865444444333432           13445555 8999999999843 3


Q ss_pred             hhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360          106 TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      +..++ +.....+.+++.+|....| +-.++.+.+.+....+.
T Consensus        79 ~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~  119 (304)
T PRK06522         79 LPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVL  119 (304)
T ss_pred             HHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEE
Confidence            33333 3444456777888888776 33456666666655554

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=98.48  E-value=4.7e-07  Score=76.61  Aligned_cols=94  Identities=17%  Similarity=0.237  Sum_probs=63.7

Q ss_pred             CeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh--------cCc--e-ecCCHHhhcCcCCEEEEcCCCCh
Q 026360           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--------TGA--K-FEEDLDTMLPKCDIVVVNTPLTE  104 (240)
Q Consensus        37 ~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~--------~g~--~-~~~~l~ell~~aDiVvl~lp~~~  104 (240)
                      ++|+||| .|.||..++..|...|++|.++++++...+....        .|.  . ...+..+.++++|+|++++|.. 
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~-   79 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWD-   79 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHH-
Confidence            4799997 8999999999999999999999987543322211        121  1 1236678889999999999943 


Q ss_pred             hhhhcccHHHHccCCCCCEEEEcCCCccc
Q 026360          105 KTRGMFDKDRIAKMKKGVLIVNNARGAIM  133 (240)
Q Consensus       105 ~t~~~i~~~~l~~mk~gailIN~srg~~v  133 (240)
                      ....++ ++.-..++ +.++|++.-|--.
T Consensus        80 ~~~~~l-~~l~~~l~-~~vvI~~~ngi~~  106 (219)
T TIGR01915        80 HVLKTL-ESLRDELS-GKLVISPVVPLAS  106 (219)
T ss_pred             HHHHHH-HHHHHhcc-CCEEEEeccCcee
Confidence            223332 22222333 5899999877433

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=98.46  E-value=2.2e-07  Score=75.56  Aligned_cols=96  Identities=20%  Similarity=0.295  Sum_probs=68.3

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec--------------------------CCH
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--------------------------EDL   86 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~--------------------------~~l   86 (240)
                      .+...+|.|+|.|++|+..++.++++|++|+.+|..+.........+...+                          ..+
T Consensus        17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f   96 (168)
T PF01262_consen   17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNF   96 (168)
T ss_dssp             EE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHH
T ss_pred             CCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHH
Confidence            567899999999999999999999999999999976533333333332211                          235


Q ss_pred             HhhcCcCCEEEEcC-CCChhhhhcccHHHHccCCCCCEEEEcC
Q 026360           87 DTMLPKCDIVVVNT-PLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus        87 ~ell~~aDiVvl~l-p~~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      .+.++.+|+|+.++ .-.+..-.++.++.++.||++++|+|+|
T Consensus        97 ~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis  139 (168)
T PF01262_consen   97 AEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS  139 (168)
T ss_dssp             HHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred             HHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence            57788999998643 2244556789999999999999999997

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=98.46  E-value=1.3e-06  Score=63.15  Aligned_cols=66  Identities=32%  Similarity=0.473  Sum_probs=55.4

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccC-CCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~-G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~  111 (240)
                      .+.+++++|+|.|.+|+.++..+... +.+|.++|+                          |+++.+.+.    .+.+.
T Consensus        20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~----~~~~~   69 (86)
T cd05191          20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPA----GVPVL   69 (86)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCC----CCCch
Confidence            47899999999999999999999988 567888887                          999999873    34455


Q ss_pred             HHHHccCCCCCEEEEcC
Q 026360          112 KDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       112 ~~~l~~mk~gailIN~s  128 (240)
                      ++....+++++++++++
T Consensus        70 ~~~~~~~~~~~~v~~~a   86 (86)
T cd05191          70 EEATAKINEGAVVIDLA   86 (86)
T ss_pred             HHHHHhcCCCCEEEecC
Confidence            55678899999999874

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=98.44  E-value=2.8e-06  Score=72.39  Aligned_cols=132  Identities=18%  Similarity=0.160  Sum_probs=90.7

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCE---EEEEcCCC----CCh--------hHHHhcCceec-CCHHhhcCcCCE
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN---LLYHDRVK----MDP--------QLEKETGAKFE-EDLDTMLPKCDI   95 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~---V~~~d~~~----~~~--------~~~~~~g~~~~-~~l~ell~~aDi   95 (240)
                      .+++++++.|+|.|.+|+.+|..|...|..   |+++|++.    ...        +.++..+.... .++.+.++++|+
T Consensus        21 ~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dv  100 (226)
T cd05311          21 KKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADV  100 (226)
T ss_pred             CCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCE
Confidence            358899999999999999999999999984   99999973    221        12233221111 267778889999


Q ss_pred             EEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCC-ccEEEeeCCCCCCCCCCCCCCCCCCeEE
Q 026360           96 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH-IAGYSGDVWNPQPAPKDHPWRYMPNQAM  174 (240)
Q Consensus        96 Vvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~-i~ga~lDV~~~EP~~~~~~l~~~~nv~~  174 (240)
                      |+.++|     .++++.+.++.|.++.++..++..  ..+.-+.++.+.|- +..-+.     +.     ...+..|+++
T Consensus       101 lIgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP--~~e~~~~~A~~~ga~i~a~G~-----~~-----~~~Q~nn~~~  163 (226)
T cd05311         101 FIGVSR-----PGVVKKEMIKKMAKDPIVFALANP--VPEIWPEEAKEAGADIVATGR-----SD-----FPNQVNNVLG  163 (226)
T ss_pred             EEeCCC-----CCCCCHHHHHhhCCCCEEEEeCCC--CCcCCHHHHHHcCCcEEEeCC-----CC-----Cccccceeee
Confidence            999987     467888899999999999998833  34444444444433 232221     11     2236788999


Q ss_pred             cCCCCC
Q 026360          175 TPHVSG  180 (240)
Q Consensus       175 TPH~a~  180 (240)
                      -|=++-
T Consensus       164 fPg~~~  169 (226)
T cd05311         164 FPGIFR  169 (226)
T ss_pred             cchhhH
Confidence            997743

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=98.43  E-value=1.4e-06  Score=76.78  Aligned_cols=108  Identities=15%  Similarity=0.193  Sum_probs=75.0

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCce-------------ecCCHHhhcCcCCEEEEcCCCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-------------FEEDLDTMLPKCDIVVVNTPLT  103 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-------------~~~~l~ell~~aDiVvl~lp~~  103 (240)
                      ++|+|+|.|.||..+|..|...|++|+++++ +...+...+.|..             ..++.++....+|+|++++|..
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~   79 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY   79 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc
Confidence            4799999999999999999999999999998 4333333333321             1235566678999999999843


Q ss_pred             hhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360          104 EKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       104 ~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                       .+...+ .+....++++.++|.+.-| +-..+.+.+.+.+.++.
T Consensus        80 -~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~  121 (305)
T PRK12921         80 -QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL  121 (305)
T ss_pred             -CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence             333332 3344456778888887665 44567777777665544

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.43  E-value=8.5e-07  Score=79.03  Aligned_cols=93  Identities=27%  Similarity=0.380  Sum_probs=66.0

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCC-CEEEEEcCCCCCh-hHHHhcCceec--CCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDP-QLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G-~~V~~~d~~~~~~-~~~~~~g~~~~--~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      +.|++|+|||.|.||+.+++.++..| .+|+++++++... +.+..+|....  +++.+.+.++|+|+.++|.... ..+
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~  254 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKI  254 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHH
Confidence            68999999999999999999999866 5799999976433 44555665432  3466778899999999985433 222


Q ss_pred             ccHHHHccC-CCCCEEEEcC
Q 026360          110 FDKDRIAKM-KKGVLIVNNA  128 (240)
Q Consensus       110 i~~~~l~~m-k~gailIN~s  128 (240)
                      + ...++.. +++.++||++
T Consensus       255 ~-~~~~~~~~~~~~~viDla  273 (311)
T cd05213         255 V-ERAMKKRSGKPRLIVDLA  273 (311)
T ss_pred             H-HHHHhhCCCCCeEEEEeC
Confidence            2 2333322 3567888887

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.42  E-value=5.3e-07  Score=83.50  Aligned_cols=94  Identities=27%  Similarity=0.429  Sum_probs=69.0

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCC-CEEEEEcCCCCChh-HHHhcCcee--cCCHHhhcCcCCEEEEcCCCChhhhh
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQ-LEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRG  108 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G-~~V~~~d~~~~~~~-~~~~~g~~~--~~~l~ell~~aDiVvl~lp~~~~t~~  108 (240)
                      .+.|++++|+|.|.||..+++.|+..| .+|++++++..... .+...|...  ..++.+.+.++|+|+.+++.   ...
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s---~~~  253 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGA---PHP  253 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCC---CCc
Confidence            478999999999999999999999999 68999999764333 344455432  24566788999999999863   345


Q ss_pred             cccHHHHccCC----CCCEEEEcCC
Q 026360          109 MFDKDRIAKMK----KGVLIVNNAR  129 (240)
Q Consensus       109 ~i~~~~l~~mk----~gailIN~sr  129 (240)
                      +++.+.++.+.    .+.+++|.+.
T Consensus       254 ii~~e~l~~~~~~~~~~~~viDla~  278 (417)
T TIGR01035       254 IVSKEDVERALRERTRPLFIIDIAV  278 (417)
T ss_pred             eEcHHHHHHHHhcCCCCeEEEEeCC
Confidence            67777666542    2347778763

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.42  E-value=4.7e-06  Score=75.37  Aligned_cols=159  Identities=13%  Similarity=0.132  Sum_probs=118.1

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH-hc----CceecCCHHhh---cCcCCEEEEcCCCChhhh
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ET----GAKFEEDLDTM---LPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~-~~----g~~~~~~l~el---l~~aDiVvl~lp~~~~t~  107 (240)
                      ...||+||+|.||+.+|......|++|.+|+|+..+.+.+- +.    .+....+++|+   ++.-.-|++.+.......
T Consensus         3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD   82 (473)
T COG0362           3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVD   82 (473)
T ss_pred             ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHH
Confidence            35699999999999999999999999999999875544432 22    23344567765   455666777765432223


Q ss_pred             hcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHH
Q 026360          108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQV  187 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nv~~TPH~a~~t~~~~~  187 (240)
                      ..| ++++..|.+|-++||-+...--|+..-.++|.+..|.+.+.-|...|--.-..|-       +   +-|.++++++
T Consensus        83 ~~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPS-------i---MpGG~~eay~  151 (473)
T COG0362          83 AVI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPS-------I---MPGGQKEAYE  151 (473)
T ss_pred             HHH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCC-------c---CCCCCHHHHH
Confidence            333 4678889999999999999999999999999999999999999888754322222       1   2377899998


Q ss_pred             HhhhhHHHHHHHHHHHccCCC
Q 026360          188 IVHFFPVFMRLFTSFLSHKSN  208 (240)
Q Consensus       188 ~~~~~~~~~~~~~~~~~g~~~  208 (240)
                      .+.-   +.+.|.+-..|+|+
T Consensus       152 ~v~p---il~~IaAk~~g~pC  169 (473)
T COG0362         152 LVAP---ILTKIAAKVDGEPC  169 (473)
T ss_pred             HHHH---HHHHHHhhcCCCCc
Confidence            8776   44557777778776

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.42  E-value=3.6e-07  Score=75.59  Aligned_cols=108  Identities=14%  Similarity=0.178  Sum_probs=68.9

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH--------------------hcCceecCCHHhhcCcCCEE
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK--------------------ETGAKFEEDLDTMLPKCDIV   96 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~--------------------~~g~~~~~~l~ell~~aDiV   96 (240)
                      |+|+|||+|.+|-.+|..+...|++|+++|.++...+...                    .-......+.++.++++|++
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~   80 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV   80 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence            6899999999999999999999999999998753211111                    01234456788889999999


Q ss_pred             EEcCCCChhhhh------cc--cHHHHccCCCCCEEEEcCCCcccCHHHHH-HHHHh
Q 026360           97 VVNTPLTEKTRG------MF--DKDRIAKMKKGVLIVNNARGAIMDTQAVV-DACSS  144 (240)
Q Consensus        97 vl~lp~~~~t~~------~i--~~~~l~~mk~gailIN~srg~~vd~~aL~-~aL~~  144 (240)
                      ++|+|-.....+      +.  -+...+.++++.++|.-|+-.+=..+.+. ..|++
T Consensus        81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~  137 (185)
T PF03721_consen   81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEK  137 (185)
T ss_dssp             EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHH
T ss_pred             EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhh
Confidence            999983221111      11  23556668899999999998887777444 44444

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=98.42  E-value=7.5e-06  Score=76.97  Aligned_cols=138  Identities=12%  Similarity=0.119  Sum_probs=89.4

Q ss_pred             CeEEEEccChHHHHHHHHhccC--CCEEEEEcCCCCChhHHH----------------h-cC--ceecCCHHhhcCcCCE
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPF--NCNLLYHDRVKMDPQLEK----------------E-TG--AKFEEDLDTMLPKCDI   95 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~--G~~V~~~d~~~~~~~~~~----------------~-~g--~~~~~~l~ell~~aDi   95 (240)
                      ++|+|||+|.+|..+|..|...  |++|+++|.++...+...                + .+  ....++.++.+++||+
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv   81 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI   81 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence            6899999999999999999866  688999997653322211                1 01  3344567788999999


Q ss_pred             EEEcCCCCh-----------hhhhcc--cHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeC-CCCCCCC
Q 026360           96 VVVNTPLTE-----------KTRGMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV-WNPQPAP  161 (240)
Q Consensus        96 Vvl~lp~~~-----------~t~~~i--~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV-~~~EP~~  161 (240)
                      +++|+|...           +...+.  .++.-+.++++.++|.-|.-.+=..+.+.+.+.+.. .|.-..| +.+|=+.
T Consensus        82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~PErl~  160 (473)
T PLN02353         82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNPEFLA  160 (473)
T ss_pred             EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECCCccC
Confidence            999986211           111221  234566689999999999988777788888877631 1111111 4556444


Q ss_pred             CC---CCCCCCCCeEEc
Q 026360          162 KD---HPWRYMPNQAMT  175 (240)
Q Consensus       162 ~~---~~l~~~~nv~~T  175 (240)
                      +.   +.+...|++++.
T Consensus       161 ~G~a~~d~~~p~riViG  177 (473)
T PLN02353        161 EGTAIEDLFKPDRVLIG  177 (473)
T ss_pred             CCCcccccCCCCEEEEc
Confidence            33   445566666643

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=98.41  E-value=5.8e-07  Score=73.96  Aligned_cols=114  Identities=13%  Similarity=0.176  Sum_probs=77.6

Q ss_pred             eEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH-----------h-------------cCceecCCHHhhcCcC
Q 026360           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-----------E-------------TGAKFEEDLDTMLPKC   93 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~-----------~-------------~g~~~~~~l~ell~~a   93 (240)
                      +|+|||.|.||+.+|..+...|++|..||+++...+...           .             ..+...++++++. +|
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a   79 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA   79 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence            699999999999999999999999999999764321110           0             1134557888888 99


Q ss_pred             CEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCC
Q 026360           94 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (240)
Q Consensus        94 DiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~  155 (240)
                      |+|+=++|-+.+.+.-+-++.-+.++++++|...+  +-+....|...+. ..-+..++--|
T Consensus        80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnT--Ssl~i~~la~~~~-~p~R~ig~Hf~  138 (180)
T PF02737_consen   80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNT--SSLSISELAAALS-RPERFIGMHFF  138 (180)
T ss_dssp             SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE----SSS-HHHHHTTSS-TGGGEEEEEE-
T ss_pred             heehhhccccHHHHHHHHHHHHHHhCCCceEEecC--CCCCHHHHHhccC-cCceEEEEecc
Confidence            99999999888888877778888889999886654  3456667777664 33344455533

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=98.39  E-value=1.2e-06  Score=75.99  Aligned_cols=98  Identities=19%  Similarity=0.364  Sum_probs=65.4

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCC----CEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcc
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G----~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i  110 (240)
                      ..++|||||+|+||.++++.+...|    .++++++++...      .+.....+..++++++|+|++++| ......++
T Consensus         2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl   74 (260)
T PTZ00431          2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN------TPFVYLQSNEELAKTCDIIVLAVK-PDLAGKVL   74 (260)
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc------CCeEEeCChHHHHHhCCEEEEEeC-HHHHHHHH
Confidence            3468999999999999999998765    248888886422      233445577788889999999998 23334443


Q ss_pred             cHHHHccCCCCCEEEEcCCCcccCHHHHHHHHH
Q 026360          111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  143 (240)
Q Consensus       111 ~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~  143 (240)
                      . +....++++ .+|.+.-|  ++.+.+.+.+.
T Consensus        75 ~-~i~~~l~~~-~iIS~~aG--i~~~~l~~~~~  103 (260)
T PTZ00431         75 L-EIKPYLGSK-LLISICGG--LNLKTLEEMVG  103 (260)
T ss_pred             H-HHHhhccCC-EEEEEeCC--ccHHHHHHHcC
Confidence            2 343445544 55666555  34555555553

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=98.35  E-value=2.1e-06  Score=71.85  Aligned_cols=91  Identities=14%  Similarity=0.208  Sum_probs=63.9

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCC-hhH-HHhcCce-ecCCHHhhcCcCCEEEEcCCCChhhhhcccHH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQL-EKETGAK-FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  113 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~-~~~-~~~~g~~-~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~  113 (240)
                      ++++|+|.|+||..+|+++...|++|++-+++..+ .+. ++.++.. ...+.++..+.+|+|++++|.... .. +.++
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~-~~-v~~~   79 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAI-PD-VLAE   79 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHH-Hh-HHHH
Confidence            68999999999999999999999999888655432 222 2222221 224788899999999999995322 22 2334


Q ss_pred             HHccCCCCCEEEEcCCC
Q 026360          114 RIAKMKKGVLIVNNARG  130 (240)
Q Consensus       114 ~l~~mk~gailIN~srg  130 (240)
                      ....+. |.++|++.-.
T Consensus        80 l~~~~~-~KIvID~tnp   95 (211)
T COG2085          80 LRDALG-GKIVIDATNP   95 (211)
T ss_pred             HHHHhC-CeEEEecCCC
Confidence            444455 8899998754

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=98.35  E-value=1.3e-06  Score=82.43  Aligned_cols=96  Identities=19%  Similarity=0.233  Sum_probs=74.6

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec--CCH------------------------
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--EDL------------------------   86 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~--~~l------------------------   86 (240)
                      ...+.+|.|+|.|.+|...++.++.+|.+|+++|+++...+.++++|.+..  +..                        
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~  241 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL  241 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence            356999999999999999999999999999999998877778888887622  110                        


Q ss_pred             -HhhcCcCCEEEEcCCCChh-hhhcccHHHHccCCCCCEEEEcC
Q 026360           87 -DTMLPKCDIVVVNTPLTEK-TRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus        87 -~ell~~aDiVvl~lp~~~~-t~~~i~~~~l~~mk~gailIN~s  128 (240)
                       .+.+..+|+|+.+...... ...++.++.++.||+|+++|++|
T Consensus       242 ~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg  285 (509)
T PRK09424        242 FAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA  285 (509)
T ss_pred             HHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence             1113579999998853211 22455688999999999999997

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=98.34  E-value=1e-06  Score=81.74  Aligned_cols=93  Identities=26%  Similarity=0.432  Sum_probs=67.6

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChh-HHHhcCcee--cCCHHhhcCcCCEEEEcCCCChhhhh
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-LEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRG  108 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~-~~~~~g~~~--~~~l~ell~~aDiVvl~lp~~~~t~~  108 (240)
                      .+.|++++|+|.|.||+.+++.|...|. +|+++++++.... .+..+|...  ..++.+.+.++|+|+.++|..   ..
T Consensus       179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~---~~  255 (423)
T PRK00045        179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAP---HP  255 (423)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCC---Cc
Confidence            3789999999999999999999999998 7999999764433 444455332  235667788999999998743   34


Q ss_pred             cccHHHHccC-----CCCCEEEEcC
Q 026360          109 MFDKDRIAKM-----KKGVLIVNNA  128 (240)
Q Consensus       109 ~i~~~~l~~m-----k~gailIN~s  128 (240)
                      ++..+.++.+     +.+.++||++
T Consensus       256 ~i~~~~l~~~~~~~~~~~~vviDla  280 (423)
T PRK00045        256 IIGKGMVERALKARRHRPLLLVDLA  280 (423)
T ss_pred             EEcHHHHHHHHhhccCCCeEEEEeC
Confidence            4566655443     2456777775

>PLN00203 glutamyl-tRNA reductase

Probab=98.34  E-value=9.8e-07  Score=83.66  Aligned_cols=93  Identities=19%  Similarity=0.314  Sum_probs=69.3

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHH-hc-Cc--e--ecCCHHhhcCcCCEEEEcCCCChh
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEK-ET-GA--K--FEEDLDTMLPKCDIVVVNTPLTEK  105 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~-~~-g~--~--~~~~l~ell~~aDiVvl~lp~~~~  105 (240)
                      ++.+++|+|||.|.||+.+++.|...|. +|++++|+........ .+ +.  .  ..+++.+.+.++|+|+.++|.   
T Consensus       263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s---  339 (519)
T PLN00203        263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSS---  339 (519)
T ss_pred             CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCC---
Confidence            3789999999999999999999999997 6999999864443333 23 22  1  234667888999999999873   


Q ss_pred             hhhcccHHHHccCCC-------CCEEEEcC
Q 026360          106 TRGMFDKDRIAKMKK-------GVLIVNNA  128 (240)
Q Consensus       106 t~~~i~~~~l~~mk~-------gailIN~s  128 (240)
                      ...++..+.++.+++       ..+|||++
T Consensus       340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLA  369 (519)
T PLN00203        340 ETPLFLKEHVEALPPASDTVGGKRLFVDIS  369 (519)
T ss_pred             CCCeeCHHHHHHhhhcccccCCCeEEEEeC
Confidence            355677888777643       24788876

>PRK06141 ornithine cyclodeaminase; Validated

Probab=98.33  E-value=2.4e-06  Score=76.24  Aligned_cols=89  Identities=19%  Similarity=0.199  Sum_probs=63.5

Q ss_pred             cCCCeEEEEccChHHHHHHHHhcc-CC-CEEEEEcCCCCChhHHHh-c---C--ceecCCHHhhcCcCCEEEEcCCCChh
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKP-FN-CNLLYHDRVKMDPQLEKE-T---G--AKFEEDLDTMLPKCDIVVVNTPLTEK  105 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~-~G-~~V~~~d~~~~~~~~~~~-~---g--~~~~~~l~ell~~aDiVvl~lp~~~~  105 (240)
                      ...++++|||.|.+|+.+++.+.. ++ .+|.+|+|++.+.+.+.+ .   |  +..+.+.++.+++||+|+.++|..  
T Consensus       123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~--  200 (314)
T PRK06141        123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST--  200 (314)
T ss_pred             CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC--
Confidence            357899999999999999985543 44 679999998654443322 1   3  445678899999999998888744  


Q ss_pred             hhhcccHHHHccCCCCCEEEEcC
Q 026360          106 TRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailIN~s  128 (240)
                       ..++..+   .++||+.+.-++
T Consensus       201 -~pvl~~~---~l~~g~~i~~ig  219 (314)
T PRK06141        201 -EPLVRGE---WLKPGTHLDLVG  219 (314)
T ss_pred             -CCEecHH---HcCCCCEEEeeC
Confidence             4556553   468998444444

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.32  E-value=1.8e-06  Score=76.77  Aligned_cols=97  Identities=22%  Similarity=0.289  Sum_probs=70.8

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh--------------cCceecCCHHhhcCcCCEEEEcCCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--------------TGAKFEEDLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~--------------~g~~~~~~l~ell~~aDiVvl~lp~  102 (240)
                      ++|+|+|.|.+|.++|+.|...|++|..|.+++.-......              .++....|++++++.||+|++.+| 
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP-   80 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP-   80 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC-
Confidence            58999999999999999999999999999986422211111              123445789999999999999999 


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEEcCCCcccCH
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDT  135 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~  135 (240)
                      +...+.++ ++.-..++++..+|+++.|=-.+.
T Consensus        81 s~~~r~v~-~~l~~~l~~~~~iv~~sKGie~~t  112 (329)
T COG0240          81 SQALREVL-RQLKPLLLKDAIIVSATKGLEPET  112 (329)
T ss_pred             hHHHHHHH-HHHhhhccCCCeEEEEeccccCCC
Confidence            23333333 233345789999999998855443

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.32  E-value=4.4e-06  Score=73.29  Aligned_cols=79  Identities=19%  Similarity=0.343  Sum_probs=65.7

Q ss_pred             ccccCCCeEEEEccCh-HHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~-iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      +.++.||++.|||.|. +|+.+|..|...|+.|++++...              .++++.+++||+|+.+++-    .++
T Consensus       154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvi~avG~----p~~  215 (285)
T PRK10792        154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT--------------KNLRHHVRNADLLVVAVGK----PGF  215 (285)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC--------------CCHHHHHhhCCEEEEcCCC----ccc
Confidence            4579999999999998 99999999999999999987531              3688899999999999952    245


Q ss_pred             ccHHHHccCCCCCEEEEcCCC
Q 026360          110 FDKDRIAKMKKGVLIVNNARG  130 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg  130 (240)
                      +..+   .+|+|+++||+|-.
T Consensus       216 v~~~---~vk~gavVIDvGin  233 (285)
T PRK10792        216 IPGE---WIKPGAIVIDVGIN  233 (285)
T ss_pred             ccHH---HcCCCcEEEEcccc
Confidence            6654   46999999999943

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=98.31  E-value=2.2e-06  Score=69.19  Aligned_cols=81  Identities=25%  Similarity=0.332  Sum_probs=57.8

Q ss_pred             ccccCCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      +.+++||++.|||-+ .+|+.++..|...|+.|+.++...              .++++.+++||+|+.+++-    .++
T Consensus        31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T--------------~~l~~~~~~ADIVVsa~G~----~~~   92 (160)
T PF02882_consen   31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT--------------KNLQEITRRADIVVSAVGK----PNL   92 (160)
T ss_dssp             T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS--------------SSHHHHHTTSSEEEE-SSS----TT-
T ss_pred             CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC--------------CcccceeeeccEEeeeecc----ccc
Confidence            457999999999987 599999999999999999887632              3788889999999999972    455


Q ss_pred             ccHHHHccCCCCCEEEEcCCCcc
Q 026360          110 FDKDRIAKMKKGVLIVNNARGAI  132 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg~~  132 (240)
                      +..+   .+|+|+++||++.-..
T Consensus        93 i~~~---~ik~gavVIDvG~~~~  112 (160)
T PF02882_consen   93 IKAD---WIKPGAVVIDVGINYV  112 (160)
T ss_dssp             B-GG---GS-TTEEEEE--CEEE
T ss_pred             cccc---cccCCcEEEecCCccc
Confidence            6554   4699999999986554

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=98.30  E-value=5.6e-06  Score=71.88  Aligned_cols=125  Identities=15%  Similarity=0.146  Sum_probs=77.4

Q ss_pred             HHHHhccCC--CEEEEEcCCCCChhHHHhcCce--ecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEE
Q 026360           51 LLQRLKPFN--CNLLYHDRVKMDPQLEKETGAK--FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVN  126 (240)
Q Consensus        51 ~A~~l~~~G--~~V~~~d~~~~~~~~~~~~g~~--~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN  126 (240)
                      +|+.|+..|  .+|+++|+++...+.+.+.|+.  ...+ .+.++++|+|++|+|.. .+..+ -++....+++|+++++
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~DlvvlavP~~-~~~~~-l~~~~~~~~~~~iv~D   77 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAVPVS-AIEDV-LEEIAPYLKPGAIVTD   77 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S-HH-HHHHH-HHHHHCGS-TTSEEEE
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcCCHH-HHHHH-HHHhhhhcCCCcEEEE
Confidence            467788777  7899999987666666677764  2223 57789999999999932 23333 3466677999999999


Q ss_pred             cCCCcccCHHHHHHHHHhCCccEEEee-CCCCC---CCCCCCCCCCCCCeEEcCCCC
Q 026360          127 NARGAIMDTQAVVDACSSGHIAGYSGD-VWNPQ---PAPKDHPWRYMPNQAMTPHVS  179 (240)
Q Consensus       127 ~srg~~vd~~aL~~aL~~g~i~ga~lD-V~~~E---P~~~~~~l~~~~nv~~TPH~a  179 (240)
                      ++.-+.--.+++.+.+. ....+.+.- -+.+|   |...+..++.-.++++||+-.
T Consensus        78 v~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~  133 (258)
T PF02153_consen   78 VGSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED  133 (258)
T ss_dssp             --S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred             eCCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence            99876655556666665 233333322 12222   222356788888999999865

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.28  E-value=2.9e-06  Score=74.44  Aligned_cols=80  Identities=21%  Similarity=0.315  Sum_probs=66.5

Q ss_pred             ccccCCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      +.++.||++.|||-| .+|+.+|..|...|+.|++++...              .++.+.+++||+|+.+++    ..++
T Consensus       152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t--------------~~l~~~~~~ADIvV~AvG----~p~~  213 (285)
T PRK14191        152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT--------------KDLSFYTQNADIVCVGVG----KPDL  213 (285)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc--------------HHHHHHHHhCCEEEEecC----CCCc
Confidence            457899999999999 999999999999999999886421              256788999999999997    3456


Q ss_pred             ccHHHHccCCCCCEEEEcCCCc
Q 026360          110 FDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg~  131 (240)
                      +..+.+   |+|+++||+|-..
T Consensus       214 i~~~~v---k~GavVIDvGi~~  232 (285)
T PRK14191        214 IKASMV---KKGAVVVDIGINR  232 (285)
T ss_pred             CCHHHc---CCCcEEEEeeccc
Confidence            776654   9999999999544

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.27  E-value=2.8e-06  Score=77.28  Aligned_cols=98  Identities=12%  Similarity=0.183  Sum_probs=67.6

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCC-------CEEEEEcCCCCC-----hhHHHh--------------cCceecCCHHh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFN-------CNLLYHDRVKMD-----PQLEKE--------------TGAKFEEDLDT   88 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G-------~~V~~~d~~~~~-----~~~~~~--------------~g~~~~~~l~e   88 (240)
                      .-++|+|||.|.+|.++|..|...|       .+|..|.+++.-     .+....              .++...+++++
T Consensus        10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e   89 (365)
T PTZ00345         10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE   89 (365)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence            3469999999999999999998766       789999876531     111111              02334568889


Q ss_pred             hcCcCCEEEEcCCCChhhhhcccHHHHc--cCCCCCEEEEcCCCcccC
Q 026360           89 MLPKCDIVVVNTPLTEKTRGMFDKDRIA--KMKKGVLIVNNARGAIMD  134 (240)
Q Consensus        89 ll~~aDiVvl~lp~~~~t~~~i~~~~l~--~mk~gailIN~srg~~vd  134 (240)
                      +++++|+|++++|. ...+.++ .+.-.  .+++++++|+++.|=-.+
T Consensus        90 av~~aDiIvlAVPs-q~l~~vl-~~l~~~~~l~~~~~iIS~aKGIe~~  135 (365)
T PTZ00345         90 AVEDADLLIFVIPH-QFLESVL-SQIKENNNLKKHARAISLTKGIIVE  135 (365)
T ss_pred             HHhcCCEEEEEcCh-HHHHHHH-HHhccccccCCCCEEEEEeCCcccC
Confidence            99999999999992 2233332 23333  466678999998874433

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.26  E-value=4.8e-06  Score=73.28  Aligned_cols=79  Identities=23%  Similarity=0.336  Sum_probs=64.9

Q ss_pred             ccccCCCeEEEEccCh-HHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~-iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      +.++.|+++.|+|.|. +|+.+|..|...|+.|+++++.              ..++.+.++++|+|+.+++. +   +.
T Consensus       154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~--------------t~~L~~~~~~aDIvI~AtG~-~---~~  215 (283)
T PRK14192        154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR--------------TQNLPELVKQADIIVGAVGK-P---EL  215 (283)
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC--------------chhHHHHhccCCEEEEccCC-C---Cc
Confidence            4578999999999998 9999999999999999999862              12567777999999999962 2   25


Q ss_pred             ccHHHHccCCCCCEEEEcCCC
Q 026360          110 FDKDRIAKMKKGVLIVNNARG  130 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg  130 (240)
                      +..+.   +|+|++++|++-.
T Consensus       216 v~~~~---lk~gavViDvg~n  233 (283)
T PRK14192        216 IKKDW---IKQGAVVVDAGFH  233 (283)
T ss_pred             CCHHH---cCCCCEEEEEEEe
Confidence            66554   7999999999844

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=98.26  E-value=3e-06  Score=76.50  Aligned_cols=94  Identities=16%  Similarity=0.138  Sum_probs=66.3

Q ss_pred             eEEEEccChHHHHHHHHhccCC--------CEEEEEcCCCC--Chh---HHHh--------------cCceecCCHHhhc
Q 026360           38 TVGTVGCGRIGKLLLQRLKPFN--------CNLLYHDRVKM--DPQ---LEKE--------------TGAKFEEDLDTML   90 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~~~G--------~~V~~~d~~~~--~~~---~~~~--------------~g~~~~~~l~ell   90 (240)
                      +|+|||.|++|.++|..+...|        .+|..|.+.+.  ...   ....              .++...+++++++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal   80 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA   80 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence            5899999999999999998877        89999987320  111   1100              0123446899999


Q ss_pred             CcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCccc
Q 026360           91 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM  133 (240)
Q Consensus        91 ~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~v  133 (240)
                      ++||+|++++|. ...+.+ -.+.-..++++..+|+++.|=-.
T Consensus        81 ~~ADiIIlAVPs-~~i~~v-l~~l~~~l~~~~~iVs~tKGie~  121 (342)
T TIGR03376        81 KGADILVFVIPH-QFLEGI-CKQLKGHVKPNARAISCIKGLEV  121 (342)
T ss_pred             hcCCEEEEECCh-HHHHHH-HHHHHhhcCCCCEEEEEeCCccc
Confidence            999999999993 233333 33444567888999999988433

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=98.25  E-value=7e-07  Score=75.32  Aligned_cols=110  Identities=11%  Similarity=0.129  Sum_probs=74.8

Q ss_pred             CCCeEEEEccChHHHHHHHHh--ccCCCEEEE-EcCCCCChh-HHHhcCceecCCHHhhcCc--CCEEEEcCCCChhh--
Q 026360           35 EGKTVGTVGCGRIGKLLLQRL--KPFNCNLLY-HDRVKMDPQ-LEKETGAKFEEDLDTMLPK--CDIVVVNTPLTEKT--  106 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l--~~~G~~V~~-~d~~~~~~~-~~~~~g~~~~~~l~ell~~--aDiVvl~lp~~~~t--  106 (240)
                      ...+++|||+|.+|+.+++.+  ...|+++++ +|+++.... .....++...+++++++++  .|.+++++|.+...  
T Consensus        83 ~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i  162 (213)
T PRK05472         83 RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEV  162 (213)
T ss_pred             CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHH
Confidence            456899999999999999863  457888764 566432221 1111112223467777755  99999999976542  


Q ss_pred             -hhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360          107 -RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (240)
Q Consensus       107 -~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~  144 (240)
                       ..+.......-+...++.+|+.+|.+|+.++|..+|..
T Consensus       163 ~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l~~  201 (213)
T PRK05472        163 ADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTVELQT  201 (213)
T ss_pred             HHHHHHcCCCEEeecCceeecCCCCCEEEEechHHHHHH
Confidence             22222333344566788999999999999999999874

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=98.25  E-value=3.7e-06  Score=75.42  Aligned_cols=90  Identities=19%  Similarity=0.230  Sum_probs=67.2

Q ss_pred             CCCeEEEEccChHHHHHHHHhcc--CCCEEEEEcCCCCChhHHH----hcC--ceecCCHHhhcCcCCEEEEcCCCChhh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKP--FNCNLLYHDRVKMDPQLEK----ETG--AKFEEDLDTMLPKCDIVVVNTPLTEKT  106 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~--~G~~V~~~d~~~~~~~~~~----~~g--~~~~~~l~ell~~aDiVvl~lp~~~~t  106 (240)
                      .-+++||||.|.+|+..++.+..  ...+|.+||+++...+.+.    +.|  +..+.+.++++++||+|++|+|.+   
T Consensus       127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~---  203 (325)
T TIGR02371       127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR---  203 (325)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC---
Confidence            35899999999999997776653  2457999999865543322    235  345679999999999999999853   


Q ss_pred             hhcccHHHHccCCCCCEEEEcCCC
Q 026360          107 RGMFDKDRIAKMKKGVLIVNNARG  130 (240)
Q Consensus       107 ~~~i~~~~l~~mk~gailIN~srg  130 (240)
                      ..++..+.   +|||+.+..+|..
T Consensus       204 ~P~~~~~~---l~~g~~v~~vGs~  224 (325)
T TIGR02371       204 KPVVKADW---VSEGTHINAIGAD  224 (325)
T ss_pred             CcEecHHH---cCCCCEEEecCCC
Confidence            45565543   5999999999853

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.24  E-value=1.2e-05  Score=63.50  Aligned_cols=80  Identities=25%  Similarity=0.332  Sum_probs=66.2

Q ss_pred             ccccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        31 ~~~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      +.+++|+++.|+|- ..+|+.+|..|...|+.|..++.+.              .++++.+++||+|+.+++..    ++
T Consensus        23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t--------------~~l~~~v~~ADIVvsAtg~~----~~   84 (140)
T cd05212          23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT--------------IQLQSKVHDADVVVVGSPKP----EK   84 (140)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCCC----Cc
Confidence            45789999999996 5789999999999999999988532              26788899999999999843    56


Q ss_pred             ccHHHHccCCCCCEEEEcCCCc
Q 026360          110 FDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg~  131 (240)
                      +..+.   +|||++++|++...
T Consensus        85 i~~~~---ikpGa~Vidvg~~~  103 (140)
T cd05212          85 VPTEW---IKPGATVINCSPTK  103 (140)
T ss_pred             cCHHH---cCCCCEEEEcCCCc
Confidence            77665   69999999998554

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.22  E-value=4e-06  Score=73.34  Aligned_cols=80  Identities=20%  Similarity=0.307  Sum_probs=67.3

Q ss_pred             ccccCCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      +.+++|+++.|+|.+ .+|+.+|..|...|+.|+.++.+.              .++.+.+++||+|+.+++.    .++
T Consensus       147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t--------------~~L~~~~~~ADIvI~Avgk----~~l  208 (279)
T PRK14178        147 KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT--------------ENLKAELRQADILVSAAGK----AGF  208 (279)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh--------------hHHHHHHhhCCEEEECCCc----ccc
Confidence            457999999999999 999999999999999998887532              3688889999999999972    266


Q ss_pred             ccHHHHccCCCCCEEEEcCCCc
Q 026360          110 FDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg~  131 (240)
                      +.++.   +|||+++||+|-..
T Consensus       209 v~~~~---vk~GavVIDVgi~~  227 (279)
T PRK14178        209 ITPDM---VKPGATVIDVGINQ  227 (279)
T ss_pred             cCHHH---cCCCcEEEEeeccc
Confidence            77776   49999999998443

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.22  E-value=5.8e-06  Score=72.58  Aligned_cols=79  Identities=27%  Similarity=0.373  Sum_probs=65.4

Q ss_pred             ccccCCCeEEEEccCh-HHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~-iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      +.++.|+++.|||.|. +|+.+|..|...|+.|++++...              .++.+..++||+|++++.-    .++
T Consensus       159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvv~AvG~----p~~  220 (287)
T PRK14176        159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT--------------DDLKKYTLDADILVVATGV----KHL  220 (287)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC--------------CCHHHHHhhCCEEEEccCC----ccc
Confidence            4578999999999998 99999999999999999988421              3678889999999998752    246


Q ss_pred             ccHHHHccCCCCCEEEEcCCC
Q 026360          110 FDKDRIAKMKKGVLIVNNARG  130 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg  130 (240)
                      +..+   .+|+|+++||+|-.
T Consensus       221 i~~~---~vk~gavVIDvGin  238 (287)
T PRK14176        221 IKAD---MVKEGAVIFDVGIT  238 (287)
T ss_pred             cCHH---HcCCCcEEEEeccc
Confidence            6655   47899999999853

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=98.21  E-value=5.4e-06  Score=72.74  Aligned_cols=97  Identities=16%  Similarity=0.252  Sum_probs=62.9

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCC-CEEEEEcCCCCChhHH-HhcC----ceecCCHHhhcCcCCEEEEcCCCChh
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLE-KETG----AKFEEDLDTMLPKCDIVVVNTPLTEK  105 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G-~~V~~~d~~~~~~~~~-~~~g----~~~~~~l~ell~~aDiVvl~lp~~~~  105 (240)
                      ..+.++++.|+|.|.+|++++..|...| .+|++++|+....+.. ...+    +....+..+.+.++|+|+.++|....
T Consensus       119 ~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~  198 (278)
T PRK00258        119 VDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMS  198 (278)
T ss_pred             CCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCC
Confidence            4688999999999999999999999999 6899999975433322 2222    11111345677899999999995432


Q ss_pred             hhhcccHHHHccCCCCCEEEEcC
Q 026360          106 TRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      ...-...-....++++.+++|+.
T Consensus       199 ~~~~~~~~~~~~l~~~~~v~Div  221 (278)
T PRK00258        199 GELPLPPLPLSLLRPGTIVYDMI  221 (278)
T ss_pred             CCCCCCCCCHHHcCCCCEEEEee
Confidence            11000011123345666666664

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=98.20  E-value=2.1e-05  Score=71.40  Aligned_cols=156  Identities=18%  Similarity=0.296  Sum_probs=101.1

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhH-------------------HHhcC-ceecCCHHhhcCcCCEE
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-------------------EKETG-AKFEEDLDTMLPKCDIV   96 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~-------------------~~~~g-~~~~~~l~ell~~aDiV   96 (240)
                      .+|||||+|-||-.+|..+...|++|+++|.++...+.                   +.+.| .+..++.++ ++.||++
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~~~dv~   88 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEE-LKECDVF   88 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhh-cccCCEE
Confidence            79999999999999999999999999999987532111                   11222 334445555 4599999


Q ss_pred             EEcCCCChhhh-------hcc--cHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhC--CccEEEeeC---CCCCCCCC
Q 026360           97 VVNTPLTEKTR-------GMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG--HIAGYSGDV---WNPQPAPK  162 (240)
Q Consensus        97 vl~lp~~~~t~-------~~i--~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g--~i~ga~lDV---~~~EP~~~  162 (240)
                      ++|+| ||-+.       .+.  .+..-+.||+|.++|==|+-.+=.++.++..|.+.  .+. ..-|.   |.+|-.-+
T Consensus        89 iI~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~-~~~Df~laysPERv~P  166 (436)
T COG0677          89 IICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLK-FGEDFYLAYSPERVLP  166 (436)
T ss_pred             EEEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCc-ccceeeEeeCccccCC
Confidence            99998 33221       122  23456679999999999998888899988887663  333 22343   23442223


Q ss_pred             CCC---CCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccC
Q 026360          163 DHP---WRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHK  206 (240)
Q Consensus       163 ~~~---l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~  206 (240)
                      .+.   +.+.|+|     +||.|.++.+...      .-.+.+++|.
T Consensus       167 G~~~~el~~~~kV-----IgG~tp~~~e~a~------~lY~~iv~~~  202 (436)
T COG0677         167 GNVLKELVNNPKV-----IGGVTPKCAELAA------ALYKTIVEGV  202 (436)
T ss_pred             CchhhhhhcCCce-----eecCCHHHHHHHH------HHHHHheEEE
Confidence            333   3333444     3777777654432      3456677773

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=98.20  E-value=1e-05  Score=70.54  Aligned_cols=110  Identities=15%  Similarity=0.168  Sum_probs=71.5

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHH-Hhc---CceecCCHHh-hcCcCCEEEEcCCCCh--h
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KET---GAKFEEDLDT-MLPKCDIVVVNTPLTE--K  105 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~-~~~---g~~~~~~l~e-ll~~aDiVvl~lp~~~--~  105 (240)
                      ...+++++|+|.|.+|++++..+...|++|++++|+..+.+.. +..   +.....++++ ...++|+|+.++|..-  .
T Consensus       114 ~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~  193 (270)
T TIGR00507       114 LRPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGN  193 (270)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCC
Confidence            3568999999999999999999999999999999875433222 221   2111223433 3457999999999642  1


Q ss_pred             hh-hcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCc
Q 026360          106 TR-GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI  147 (240)
Q Consensus       106 t~-~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i  147 (240)
                      .. ..+.   ...++++.+++|+.-.+...  .|.++.++.++
T Consensus       194 ~~~~~~~---~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~  231 (270)
T TIGR00507       194 IDEPPVP---AEKLKEGMVVYDMVYNPGET--PFLAEAKSLGT  231 (270)
T ss_pred             CCCCCCC---HHHcCCCCEEEEeccCCCCC--HHHHHHHHCCC
Confidence            11 1222   23468888999997655433  35555555433

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=98.19  E-value=1.3e-05  Score=66.44  Aligned_cols=91  Identities=19%  Similarity=0.249  Sum_probs=65.5

Q ss_pred             ccccCCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCChhHHH--hcCceec--CC----HHhhcCcCCEEEEcCC
Q 026360           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK--ETGAKFE--ED----LDTMLPKCDIVVVNTP  101 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~--~~g~~~~--~~----l~ell~~aDiVvl~lp  101 (240)
                      +.+++||++.|||-+ .+|+.+|..|...|+.|+.+|.+.... ...  ...-...  .+    +.+.+++||+|+++++
T Consensus        57 ~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~-~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG  135 (197)
T cd01079          57 GNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQV-FTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVP  135 (197)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccc-cccccccccccccccchhhHHHHHhhhCCEEEEccC
Confidence            347999999999975 689999999999999999997532110 000  0000011  13    7789999999999998


Q ss_pred             CChhhhhc-ccHHHHccCCCCCEEEEcCC
Q 026360          102 LTEKTRGM-FDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       102 ~~~~t~~~-i~~~~l~~mk~gailIN~sr  129 (240)
                      .    .++ +..+.   .|+|+++||+|-
T Consensus       136 ~----~~~~i~~d~---ik~GavVIDVGi  157 (197)
T cd01079         136 S----PNYKVPTEL---LKDGAICINFAS  157 (197)
T ss_pred             C----CCCccCHHH---cCCCcEEEEcCC
Confidence            3    355 67665   589999999983

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.18  E-value=5.1e-06  Score=74.97  Aligned_cols=92  Identities=17%  Similarity=0.208  Sum_probs=65.1

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc---------------CceecCCHHhhcCcCCEEEEcCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET---------------GAKFEEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~---------------g~~~~~~l~ell~~aDiVvl~lp  101 (240)
                      ++|+|||.|.+|..+|..|...| +|..|.+++...+...+.               .+...+++++.++.+|+|++++|
T Consensus         8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp   86 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP   86 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence            68999999999999999999988 677777654222212111               12334577788999999999999


Q ss_pred             CChhhhhcccHHHHccCCCCCEEEEcCCCc
Q 026360          102 LTEKTRGMFDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       102 ~~~~t~~~i~~~~l~~mk~gailIN~srg~  131 (240)
                       +..++..+ ++....+++++.+|++..|=
T Consensus        87 -s~~~~~vl-~~i~~~l~~~~~vIsl~kGi  114 (341)
T PRK12439         87 -SHGFRGVL-TELAKELRPWVPVVSLVKGL  114 (341)
T ss_pred             -HHHHHHHH-HHHHhhcCCCCEEEEEEeCC
Confidence             33344433 34455678888899998864

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.18  E-value=6.7e-06  Score=73.49  Aligned_cols=93  Identities=14%  Similarity=0.253  Sum_probs=63.4

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc--------------CceecCCHHhhc-CcCCEEEEcCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------------GAKFEEDLDTML-PKCDIVVVNTP  101 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~--------------g~~~~~~l~ell-~~aDiVvl~lp  101 (240)
                      ++|+|||.|.||..+|..|...|.+|.+|+|++...+.....              ++....++++.+ ..+|+|++++|
T Consensus         1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk   80 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP   80 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence            479999999999999999999999999999864322222210              122334666665 58999999999


Q ss_pred             CChhhhhcccHHHHc-cCCCCCEEEEcCCCc
Q 026360          102 LTEKTRGMFDKDRIA-KMKKGVLIVNNARGA  131 (240)
Q Consensus       102 ~~~~t~~~i~~~~l~-~mk~gailIN~srg~  131 (240)
                      . ..+...+ ++... .+++++.+|.+..|-
T Consensus        81 s-~~~~~~l-~~l~~~~l~~~~~vv~~~nGi  109 (326)
T PRK14620         81 T-QQLRTIC-QQLQDCHLKKNTPILICSKGI  109 (326)
T ss_pred             H-HHHHHHH-HHHHHhcCCCCCEEEEEEcCe
Confidence            3 2333333 23333 567777777777664

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=98.18  E-value=2.8e-06  Score=74.69  Aligned_cols=95  Identities=18%  Similarity=0.247  Sum_probs=73.2

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-cCce------ecCCHHhhcCcCCEEEEcC--CCC
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAK------FEEDLDTMLPKCDIVVVNT--PLT  103 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-~g~~------~~~~l~ell~~aDiVvl~l--p~~  103 (240)
                      .+...+|.|||.|-+|...|+.+..+|.+|+..|.+.......+. ++.+      ...++++.+.++|+|+-++  |. 
T Consensus       165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpg-  243 (371)
T COG0686         165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPG-  243 (371)
T ss_pred             CCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecC-
Confidence            466778999999999999999999999999999987533333222 2222      1246788999999998764  42 


Q ss_pred             hhhhhcccHHHHccCCCCCEEEEcC
Q 026360          104 EKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       104 ~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      .+.-.++.++.+++||||+++||++
T Consensus       244 akaPkLvt~e~vk~MkpGsVivDVA  268 (371)
T COG0686         244 AKAPKLVTREMVKQMKPGSVIVDVA  268 (371)
T ss_pred             CCCceehhHHHHHhcCCCcEEEEEE
Confidence            3345678889999999999999996

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=98.12  E-value=1.4e-05  Score=73.91  Aligned_cols=91  Identities=16%  Similarity=0.355  Sum_probs=64.7

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChh-HHHhcC-ce--ecCCHHhhcCcCCEEEEcCCCChhhh
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-LEKETG-AK--FEEDLDTMLPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~-~~~~~g-~~--~~~~l~ell~~aDiVvl~lp~~~~t~  107 (240)
                      .+.|+++.|||.|.+|+.+++.|...|. ++++++|+..... .+..++ ..  ..+++.+.+.++|+|+.|++..   .
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~---~  254 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL---E  254 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC---C
Confidence            5789999999999999999999999996 6999999754333 233333 22  2345667889999999999743   3


Q ss_pred             hcccHHHHccCCCCCEEEEcC
Q 026360          108 GMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~s  128 (240)
                      .++..+...  .+..++||.+
T Consensus       255 ~vi~~~~~~--~~~~~~iDLa  273 (414)
T PRK13940        255 YIVTCKYVG--DKPRVFIDIS  273 (414)
T ss_pred             eeECHHHhC--CCCeEEEEeC
Confidence            455555432  2335667765

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.12  E-value=1.2e-05  Score=70.52  Aligned_cols=80  Identities=25%  Similarity=0.374  Sum_probs=65.9

Q ss_pred             ccccCCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      +.++.||++.|||-| .+|+.+|..|...|+.|+.+....              .++.+..++||+|+++++    ..++
T Consensus       152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T--------------~~l~~~~~~ADIvV~AvG----kp~~  213 (281)
T PRK14183        152 EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT--------------KDLKAHTKKADIVIVGVG----KPNL  213 (281)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecC----cccc
Confidence            457999999999998 899999999999999998776421              367788999999999997    3456


Q ss_pred             ccHHHHccCCCCCEEEEcCCCc
Q 026360          110 FDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg~  131 (240)
                      +..+.   .|+|+++||+|-..
T Consensus       214 i~~~~---vk~gavvIDvGin~  232 (281)
T PRK14183        214 ITEDM---VKEGAIVIDIGINR  232 (281)
T ss_pred             cCHHH---cCCCcEEEEeeccc
Confidence            77665   58999999999443

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=98.10  E-value=6.6e-05  Score=66.82  Aligned_cols=110  Identities=16%  Similarity=0.183  Sum_probs=75.0

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCce--------------ecCCHHhhcCcCCEEEEcCC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK--------------FEEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~--------------~~~~l~ell~~aDiVvl~lp  101 (240)
                      .++|+|||.|.||..+|..|.+.|++|.++.++.  .+.....|..              ...+. +....+|+|++++|
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vilavK   81 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD--YEAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVGLK   81 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC--HHHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEEec
Confidence            4689999999999999999999999999999864  2333333321              11122 34678999999998


Q ss_pred             CChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEE
Q 026360          102 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS  151 (240)
Q Consensus       102 ~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~  151 (240)
                      ... +...+ ......+++++.++...-| +-.++.+.+.+...++.++.
T Consensus        82 ~~~-~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~  128 (313)
T PRK06249         82 TTA-NALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGL  128 (313)
T ss_pred             CCC-hHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEe
Confidence            432 23222 2344456788888887655 55677788888766666543

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=98.10  E-value=9.4e-06  Score=67.21  Aligned_cols=96  Identities=16%  Similarity=0.085  Sum_probs=63.2

Q ss_pred             cccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHH-hc----Cc--ee--c---CCHHhhcCcCCEEEE
Q 026360           32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ET----GA--KF--E---EDLDTMLPKCDIVVV   98 (240)
Q Consensus        32 ~~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~-~~----g~--~~--~---~~l~ell~~aDiVvl   98 (240)
                      .+++++++.|+|. |.+|+.+++.|...|.+|++++|+....+... ..    +.  ..  .   +++.+.++++|+|+.
T Consensus        24 ~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~  103 (194)
T cd01078          24 KDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFA  103 (194)
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence            3578999999995 99999999999999999999998753222211 11    11  11  1   223467889999999


Q ss_pred             cCCCChhhhhcccHHHHccCCCCCEEEEcCCCc
Q 026360           99 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus        99 ~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~  131 (240)
                      +.|....+  ...  .-...+++.+++|+.+..
T Consensus       104 at~~g~~~--~~~--~~~~~~~~~vv~D~~~~~  132 (194)
T cd01078         104 AGAAGVEL--LEK--LAWAPKPLAVAADVNAVP  132 (194)
T ss_pred             CCCCCcee--chh--hhcccCceeEEEEccCCC
Confidence            98854431  111  111345577888877554

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.09  E-value=2.1e-05  Score=69.11  Aligned_cols=80  Identities=24%  Similarity=0.368  Sum_probs=66.6

Q ss_pred             ccccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        31 ~~~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      +.++.||++.|||- ..+|+.+|..|...|+.|+.++..              ..++++.+++||+|+.+++    ..++
T Consensus       153 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~--------------t~~l~~~~~~ADIvI~AvG----~p~~  214 (284)
T PRK14190        153 NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK--------------TKNLAELTKQADILIVAVG----KPKL  214 (284)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC--------------chhHHHHHHhCCEEEEecC----CCCc
Confidence            45799999999996 578999999999999999988642              1368888999999999997    2357


Q ss_pred             ccHHHHccCCCCCEEEEcCCCc
Q 026360          110 FDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg~  131 (240)
                      +..+.+   |+|+++||+|...
T Consensus       215 i~~~~i---k~gavVIDvGi~~  233 (284)
T PRK14190        215 ITADMV---KEGAVVIDVGVNR  233 (284)
T ss_pred             CCHHHc---CCCCEEEEeeccc
Confidence            887765   8999999999665

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.05  E-value=3.3e-05  Score=67.78  Aligned_cols=80  Identities=26%  Similarity=0.364  Sum_probs=66.1

Q ss_pred             ccccCCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|+.+....              .++.+.+++||+|+.+++-    .++
T Consensus       152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG~----~~~  213 (284)
T PRK14170        152 GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT--------------KDLPQVAKEADILVVATGL----AKF  213 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCC----cCc
Confidence            457999999999975 689999999999999999886521              3678889999999999972    356


Q ss_pred             ccHHHHccCCCCCEEEEcCCCc
Q 026360          110 FDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg~  131 (240)
                      +..+.   .|+|+++||+|-..
T Consensus       214 i~~~~---vk~GavVIDvGin~  232 (284)
T PRK14170        214 VKKDY---IKPGAIVIDVGMDR  232 (284)
T ss_pred             cCHHH---cCCCCEEEEccCcc
Confidence            77665   58999999999654

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=98.04  E-value=4.4e-05  Score=65.16  Aligned_cols=107  Identities=20%  Similarity=0.260  Sum_probs=70.7

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEE-cCCC-------CChhHH----HhcC-------ceecCCHHhhc-Cc
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH-DRVK-------MDPQLE----KETG-------AKFEEDLDTML-PK   92 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~-d~~~-------~~~~~~----~~~g-------~~~~~~l~ell-~~   92 (240)
                      ++.|++++|.|+|++|+.+|+.|..+|++|+++ |.+.       .+.+..    ...|       .... +.++++ .+
T Consensus        28 ~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~~  106 (227)
T cd01076          28 GLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLELD  106 (227)
T ss_pred             CccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceeec
Confidence            589999999999999999999999999998844 4311       112211    1122       1112 223332 46


Q ss_pred             CCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus        93 aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      ||+++-|.+     .+.++.+...+++  +-+|--+....+. ....+.|+++.+.
T Consensus       107 ~Dvlip~a~-----~~~i~~~~~~~l~--a~~I~egAN~~~t-~~a~~~L~~rGi~  154 (227)
T cd01076         107 CDILIPAAL-----ENQITADNADRIK--AKIIVEAANGPTT-PEADEILHERGVL  154 (227)
T ss_pred             ccEEEecCc-----cCccCHHHHhhce--eeEEEeCCCCCCC-HHHHHHHHHCCCE
Confidence            899999886     4667777777777  4444444444445 6666888888777

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=98.03  E-value=2e-05  Score=70.75  Aligned_cols=88  Identities=26%  Similarity=0.287  Sum_probs=61.5

Q ss_pred             EEEEccChHHHHHHHHhcc-CCCEEEEEcC-CCCCh-hHHHhcCc------------------eecCCHHhhcCcCCEEE
Q 026360           39 VGTVGCGRIGKLLLQRLKP-FNCNLLYHDR-VKMDP-QLEKETGA------------------KFEEDLDTMLPKCDIVV   97 (240)
Q Consensus        39 vgIIG~G~iG~~~A~~l~~-~G~~V~~~d~-~~~~~-~~~~~~g~------------------~~~~~l~ell~~aDiVv   97 (240)
                      |||+|+|.||+.+++.+.. -+++|++++. ++... ..+..+|+                  ....++++++.++|+|+
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv   80 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV   80 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence            6899999999999998764 4688776643 22111 12222232                  12346889999999999


Q ss_pred             EcCCCChhhhhcccHHHHccCCCCCEEEEcCC
Q 026360           98 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus        98 l~lp~~~~t~~~i~~~~l~~mk~gailIN~sr  129 (240)
                      .|+|   .+.+..+.+.+..++++++|+..-.
T Consensus        81 e~Tp---~~~~~~na~~~~~~GakaVl~~~p~  109 (333)
T TIGR01546        81 DATP---GGIGAKNKPLYEKAGVKAIFQGGEK  109 (333)
T ss_pred             ECCC---CCCChhhHHHHHhCCcCEEEECCCC
Confidence            9987   4466778888888988888776443

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PRK07340 ornithine cyclodeaminase; Validated

Probab=98.02  E-value=1.5e-05  Score=70.83  Aligned_cols=91  Identities=14%  Similarity=0.169  Sum_probs=67.4

Q ss_pred             cCCCeEEEEccChHHHHHHHHhcc-CCC-EEEEEcCCCCChhHH-Hhc---Ccee-cCCHHhhcCcCCEEEEcCCCChhh
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQLE-KET---GAKF-EEDLDTMLPKCDIVVVNTPLTEKT  106 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~-~G~-~V~~~d~~~~~~~~~-~~~---g~~~-~~~l~ell~~aDiVvl~lp~~~~t  106 (240)
                      ...++++|||.|.+|+..++.+.. ++. +|.+|+|++.+.+.+ ...   +... +.+.+++++++|+|+.++|.+   
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~---  199 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR---  199 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC---
Confidence            467899999999999999999864 564 699999986443322 222   2222 468899999999999999854   


Q ss_pred             hhcccHHHHccCCCCCEEEEcCCCc
Q 026360          107 RGMFDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       107 ~~~i~~~~l~~mk~gailIN~srg~  131 (240)
                      ..++..    .+|||+.++.+|.-.
T Consensus       200 ~Pl~~~----~~~~g~hi~~iGs~~  220 (304)
T PRK07340        200 TPVYPE----AARAGRLVVAVGAFT  220 (304)
T ss_pred             CceeCc----cCCCCCEEEecCCCC
Confidence            355543    269999999998543

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=98.02  E-value=1.3e-05  Score=59.93  Aligned_cols=87  Identities=18%  Similarity=0.202  Sum_probs=58.6

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-cCceecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~  111 (240)
                      +++|+++.|||.|.+|..=++.|...|++|+++++..   +..+. ..+. ...+++.+..+|+|+.+++. ++    ++
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~---~~~~~~i~~~-~~~~~~~l~~~~lV~~at~d-~~----~n   74 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI---EFSEGLIQLI-RREFEEDLDGADLVFAATDD-PE----LN   74 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE---HHHHTSCEEE-ESS-GGGCTTESEEEE-SS--HH----HH
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch---hhhhhHHHHH-hhhHHHHHhhheEEEecCCC-HH----HH
Confidence            5899999999999999999999999999999999864   11111 1122 23456778899999988763 22    33


Q ss_pred             HHHHccCCCCCEEEEcC
Q 026360          112 KDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       112 ~~~l~~mk~gailIN~s  128 (240)
                      +......+.-.+++|++
T Consensus        75 ~~i~~~a~~~~i~vn~~   91 (103)
T PF13241_consen   75 EAIYADARARGILVNVV   91 (103)
T ss_dssp             HHHHHHHHHTTSEEEET
T ss_pred             HHHHHHHhhCCEEEEEC
Confidence            44444555566788875

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.01  E-value=4.5e-05  Score=66.80  Aligned_cols=80  Identities=25%  Similarity=0.379  Sum_probs=66.0

Q ss_pred             ccccCCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      +.++.||++.|||-+ .+|+.++..|...|+.|+.++...              .++.+..++||+|+++++-    .++
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T--------------~~l~~~~~~ADIvIsAvGk----p~~  214 (278)
T PRK14172        153 NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT--------------KNLKEVCKKADILVVAIGR----PKF  214 (278)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCC----cCc
Confidence            457899999999965 689999999999999999887521              3688889999999999972    456


Q ss_pred             ccHHHHccCCCCCEEEEcCCCc
Q 026360          110 FDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg~  131 (240)
                      +..+.   .|+|+++||+|-..
T Consensus       215 i~~~~---ik~gavVIDvGin~  233 (278)
T PRK14172        215 IDEEY---VKEGAIVIDVGTSS  233 (278)
T ss_pred             cCHHH---cCCCcEEEEeeccc
Confidence            77765   58999999998443

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.01  E-value=2.9e-05  Score=68.11  Aligned_cols=80  Identities=19%  Similarity=0.335  Sum_probs=66.1

Q ss_pred             ccccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        31 ~~~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      +.++.||++.|||- ..+|+.+|..|...|+.|+.++...              .++++..++||+|+.+++    ..++
T Consensus       154 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T--------------~~l~~~~~~ADIvIsAvG----k~~~  215 (284)
T PRK14177        154 GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT--------------QNLPSIVRQADIIVGAVG----KPEF  215 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEeCC----CcCc
Confidence            45799999999996 4689999999999999999887531              367888999999999997    3466


Q ss_pred             ccHHHHccCCCCCEEEEcCCCc
Q 026360          110 FDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg~  131 (240)
                      +..+.   .|+|+++||+|-..
T Consensus       216 i~~~~---ik~gavVIDvGin~  234 (284)
T PRK14177        216 IKADW---ISEGAVLLDAGYNP  234 (284)
T ss_pred             cCHHH---cCCCCEEEEecCcc
Confidence            77665   58999999999543

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.00  E-value=5.3e-05  Score=74.79  Aligned_cols=115  Identities=13%  Similarity=0.142  Sum_probs=83.7

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHH-----------Hhc-------------CceecCCHHhhcCc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-----------KET-------------GAKFEEDLDTMLPK   92 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~-----------~~~-------------g~~~~~~l~ell~~   92 (240)
                      ++|+|||.|.||..+|..+...|++|+.+|+++...+..           .+.             .++...+++ .+++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  392 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYA-GFER  392 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-HhcC
Confidence            689999999999999999999999999999875432211           001             123345664 4789


Q ss_pred             CCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCC
Q 026360           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (240)
Q Consensus        93 aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~  155 (240)
                      ||+|+=++|-..+.+.-+..+.-+.++++++|...+  +-+....|.+.++. .-+..++.-|
T Consensus       393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNT--Ssl~i~~la~~~~~-p~r~~g~Hff  452 (715)
T PRK11730        393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNT--STISISLLAKALKR-PENFCGMHFF  452 (715)
T ss_pred             CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcC--CCCCHHHHHhhcCC-CccEEEEecC
Confidence            999999999888888888888878899999885544  34566677777753 3344555533

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.00  E-value=3e-05  Score=68.16  Aligned_cols=81  Identities=21%  Similarity=0.319  Sum_probs=66.7

Q ss_pred             ccccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        31 ~~~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      +.++.||++.|||- ..+|+.+|..|...|+.|+.+....              .++++..++||+|+++++    ..++
T Consensus       150 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T--------------~~l~~~~~~ADIvIsAvG----kp~~  211 (287)
T PRK14173        150 GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT--------------QDLPAVTRRADVLVVAVG----RPHL  211 (287)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecC----CcCc
Confidence            45799999999996 5689999999999999999887531              267888999999999997    2367


Q ss_pred             ccHHHHccCCCCCEEEEcCCCcc
Q 026360          110 FDKDRIAKMKKGVLIVNNARGAI  132 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg~~  132 (240)
                      +..+.   .|+|+++||+|.-.+
T Consensus       212 i~~~~---vk~GavVIDVGin~~  231 (287)
T PRK14173        212 ITPEM---VRPGAVVVDVGINRV  231 (287)
T ss_pred             cCHHH---cCCCCEEEEccCccc
Confidence            77665   589999999996653

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.00  E-value=3.1e-05  Score=68.38  Aligned_cols=80  Identities=23%  Similarity=0.313  Sum_probs=66.0

Q ss_pred             ccccCCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|+.+....              .++++.+++||+|+++++-    .++
T Consensus       153 ~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvIsAvGk----p~~  214 (297)
T PRK14186        153 QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT--------------QDLASITREADILVAAAGR----PNL  214 (297)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCC----cCc
Confidence            457999999999965 689999999999999998886421              2688889999999999972    356


Q ss_pred             ccHHHHccCCCCCEEEEcCCCc
Q 026360          110 FDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg~  131 (240)
                      +..+.   .|+|+++||+|-..
T Consensus       215 i~~~~---ik~gavVIDvGin~  233 (297)
T PRK14186        215 IGAEM---VKPGAVVVDVGIHR  233 (297)
T ss_pred             cCHHH---cCCCCEEEEecccc
Confidence            77665   58999999999555

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.99  E-value=7e-05  Score=63.49  Aligned_cols=108  Identities=19%  Similarity=0.198  Sum_probs=68.9

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEE-EcCCC----------CChhHHHhc-CceecC-----CHHhhc-CcCC
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLY-HDRVK----------MDPQLEKET-GAKFEE-----DLDTML-PKCD   94 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~-~d~~~----------~~~~~~~~~-g~~~~~-----~l~ell-~~aD   94 (240)
                      ++.|+++.|.|+|++|+.+|+.|...|.+|++ .|.+.          ...+...+. ++....     +.++++ .+||
T Consensus        20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D   99 (217)
T cd05211          20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVD   99 (217)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceecccc
Confidence            57899999999999999999999999997554 56544          111112222 121110     113332 4799


Q ss_pred             EEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360           95 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus        95 iVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      +++-|.+     .+.++.+....++ =.+++-.+.+++ .. .-.+.|++..+.
T Consensus       100 VlipaA~-----~~~i~~~~a~~l~-a~~V~e~AN~p~-t~-~a~~~L~~~Gi~  145 (217)
T cd05211         100 IFAPCAL-----GNVIDLENAKKLK-AKVVAEGANNPT-TD-EALRILHERGIV  145 (217)
T ss_pred             EEeeccc-----cCccChhhHhhcC-ccEEEeCCCCCC-CH-HHHHHHHHCCcE
Confidence            9999987     4577777777776 234555555555 44 456677766655

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.98  E-value=3.4e-05  Score=67.70  Aligned_cols=80  Identities=20%  Similarity=0.322  Sum_probs=65.9

Q ss_pred             ccccCCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|+.+....              .++++..++||+|+++++    -.++
T Consensus       151 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG----~p~~  212 (282)
T PRK14169        151 DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT--------------RNLKQLTKEADILVVAVG----VPHF  212 (282)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhhCCEEEEccC----CcCc
Confidence            457899999999975 689999999999999999886421              268888999999999997    2456


Q ss_pred             ccHHHHccCCCCCEEEEcCCCc
Q 026360          110 FDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg~  131 (240)
                      +..+.   +|+|+++||+|--.
T Consensus       213 i~~~~---vk~GavVIDvGin~  231 (282)
T PRK14169        213 IGADA---VKPGAVVIDVGISR  231 (282)
T ss_pred             cCHHH---cCCCcEEEEeeccc
Confidence            77665   58999999999544

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.97  E-value=3.2e-05  Score=69.40  Aligned_cols=89  Identities=21%  Similarity=0.185  Sum_probs=65.9

Q ss_pred             CCCeEEEEccChHHHHHHHHhc-cCCC-EEEEEcCCCCChhHHH-----hcCc--eecCCHHhhcCcCCEEEEcCCCChh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLK-PFNC-NLLYHDRVKMDPQLEK-----ETGA--KFEEDLDTMLPKCDIVVVNTPLTEK  105 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~-~~G~-~V~~~d~~~~~~~~~~-----~~g~--~~~~~l~ell~~aDiVvl~lp~~~~  105 (240)
                      ..++++|||.|.+|+..+..+. ..+. +|.+|+|++.+.+.+.     ..++  ..+++++++++++|+|++++|..  
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~--  203 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK--  203 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence            5789999999999999887764 4565 5899999865443322     1243  34578899999999999999854  


Q ss_pred             hhhcccHHHHccCCCCCEEEEcCCC
Q 026360          106 TRGMFDKDRIAKMKKGVLIVNNARG  130 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailIN~srg  130 (240)
                       ..++.    +.+|+|+.++.+|.-
T Consensus       204 -~p~i~----~~l~~G~hV~~iGs~  223 (325)
T PRK08618        204 -TPVFS----EKLKKGVHINAVGSF  223 (325)
T ss_pred             -CcchH----HhcCCCcEEEecCCC
Confidence             34443    456999999999753

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.97  E-value=3.8e-05  Score=67.39  Aligned_cols=79  Identities=22%  Similarity=0.353  Sum_probs=65.6

Q ss_pred             ccccCCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|+.++...              .++++..++||+|+++++    -.++
T Consensus       152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T--------------~nl~~~~~~ADIvIsAvG----kp~~  213 (282)
T PRK14166        152 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAG----CVNL  213 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCC----CcCc
Confidence            457999999999975 689999999999999999887532              368888999999999997    2466


Q ss_pred             ccHHHHccCCCCCEEEEcCCC
Q 026360          110 FDKDRIAKMKKGVLIVNNARG  130 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg  130 (240)
                      +..+.   .|+|+++||+|-.
T Consensus       214 i~~~~---vk~GavVIDvGin  231 (282)
T PRK14166        214 LRSDM---VKEGVIVVDVGIN  231 (282)
T ss_pred             cCHHH---cCCCCEEEEeccc
Confidence            77765   5899999999843

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.96  E-value=4e-05  Score=67.24  Aligned_cols=79  Identities=23%  Similarity=0.328  Sum_probs=65.0

Q ss_pred             ccccCCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|+.++...              .++.+..++||+|+++++    ..++
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T--------------~dl~~~~k~ADIvIsAvG----kp~~  214 (282)
T PRK14180        153 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHTTKADILIVAVG----KPNF  214 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHhhhcCEEEEccC----CcCc
Confidence            457999999999965 689999999999999999887531              267788999999999997    2356


Q ss_pred             ccHHHHccCCCCCEEEEcCCC
Q 026360          110 FDKDRIAKMKKGVLIVNNARG  130 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg  130 (240)
                      +..+.   .|+|+++||+|-.
T Consensus       215 i~~~~---vk~gavVIDvGin  232 (282)
T PRK14180        215 ITADM---VKEGAVVIDVGIN  232 (282)
T ss_pred             CCHHH---cCCCcEEEEeccc
Confidence            77655   5899999999843

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.96  E-value=1.9e-05  Score=72.62  Aligned_cols=93  Identities=27%  Similarity=0.428  Sum_probs=67.8

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCCh-hHHHhcCcee--cCCHHhhcCcCCEEEEcCCCChhhhh
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-QLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRG  108 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~~g~~~--~~~l~ell~~aDiVvl~lp~~~~t~~  108 (240)
                      +|.++++.|||+|.||..+|+.|...|. +|++.+|+.... +.+..+|+.+  .+++.+.+.++|+|++++..   ...
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa---~~~  251 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSA---PHP  251 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCC---Ccc
Confidence            4899999999999999999999999995 689999986443 3456677543  35666789999999999752   244


Q ss_pred             cccHHHHccC-C--CCCEEEEcC
Q 026360          109 MFDKDRIAKM-K--KGVLIVNNA  128 (240)
Q Consensus       109 ~i~~~~l~~m-k--~gailIN~s  128 (240)
                      ++..+.+... +  +.-++||.+
T Consensus       252 ii~~~~ve~a~~~r~~~livDia  274 (414)
T COG0373         252 IITREMVERALKIRKRLLIVDIA  274 (414)
T ss_pred             ccCHHHHHHHHhcccCeEEEEec
Confidence            5554443332 2  125788876

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=97.96  E-value=4.4e-05  Score=68.55  Aligned_cols=88  Identities=17%  Similarity=0.246  Sum_probs=65.7

Q ss_pred             CCCeEEEEccChHHHHHHHHhc-cCCC-EEEEEcCCCCChhHH-Hh----cCc--eecCCHHhhcCcCCEEEEcCCCChh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLK-PFNC-NLLYHDRVKMDPQLE-KE----TGA--KFEEDLDTMLPKCDIVVVNTPLTEK  105 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~-~~G~-~V~~~d~~~~~~~~~-~~----~g~--~~~~~l~ell~~aDiVvl~lp~~~~  105 (240)
                      ..++++|||.|.+|+..++.+. ..+. +|.+|+|++.+.+.+ ..    .|+  ...+++++.+++||+|+.++|..  
T Consensus       128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~--  205 (326)
T TIGR02992       128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE--  205 (326)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC--
Confidence            4679999999999999999986 4674 599999986544332 21    243  33578899999999999999854  


Q ss_pred             hhhcccHHHHccCCCCCEEEEcC
Q 026360          106 TRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailIN~s  128 (240)
                       ..++..+.   +|+|+.+..++
T Consensus       206 -~p~i~~~~---l~~g~~i~~vg  224 (326)
T TIGR02992       206 -TPILHAEW---LEPGQHVTAMG  224 (326)
T ss_pred             -CcEecHHH---cCCCcEEEeeC
Confidence             35565544   68999887776

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=97.96  E-value=5.9e-05  Score=65.80  Aligned_cols=107  Identities=17%  Similarity=0.213  Sum_probs=64.6

Q ss_pred             CeEEEEccChHHHHHHHHhccC-CCEEE-EEcCCCCChhHHHhc--CceecCCHHhhcCcCCEEEEcCCCChhhhhcccH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQLEKET--GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~-G~~V~-~~d~~~~~~~~~~~~--g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~  112 (240)
                      ++|||||+|.||+.+++.+... ++++. ++++...........  ++..+++++++-.+.|+|+.|.|.... .    +
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~-~----e   76 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAAL-K----E   76 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHH-H----H
Confidence            4899999999999999998765 56644 334432211112222  455667888885569999999983221 1    1


Q ss_pred             HHHccCCCCCEEEEcCCCcccCH---HHHHHHHHhCCcc
Q 026360          113 DRIAKMKKGVLIVNNARGAIMDT---QAVVDACSSGHIA  148 (240)
Q Consensus       113 ~~l~~mk~gailIN~srg~~vd~---~aL~~aL~~g~i~  148 (240)
                      -....++.|.-++-.+-|.+.|.   +.|.++.++++..
T Consensus        77 ~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~  115 (265)
T PRK13303         77 HVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR  115 (265)
T ss_pred             HHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence            22233455555665555655543   4466666665543

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=97.94  E-value=8.2e-05  Score=66.09  Aligned_cols=116  Identities=15%  Similarity=0.128  Sum_probs=81.7

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHH-----------HhcC-------------ceecCCHHhhcC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-----------KETG-------------AKFEEDLDTMLP   91 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~l~ell~   91 (240)
                      -++|||||.|.||+.+|..+...|++|..+|+++...+..           .+.|             +....++. .+.
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~   81 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK   81 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence            4799999999999999999988779999999974321100           0111             11222333 678


Q ss_pred             cCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCC
Q 026360           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (240)
Q Consensus        92 ~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~  155 (240)
                      +||+|+=++|-+.+.+.-+-++.=...+|+++|-.-.  +-+.-.++.+++ +..=+..++--|
T Consensus        82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNT--Ssl~it~ia~~~-~rper~iG~HFf  142 (307)
T COG1250          82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNT--SSLSITELAEAL-KRPERFIGLHFF  142 (307)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeecc--CCCCHHHHHHHh-CCchhEEEEecc
Confidence            9999999999888888877777777789999884333  335667777777 444445666644

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.93  E-value=4.8e-05  Score=67.10  Aligned_cols=80  Identities=21%  Similarity=0.320  Sum_probs=66.1

Q ss_pred             ccccCCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|+.++...              .++.+.+++||+|+++++    ..++
T Consensus       155 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T--------------~~l~~~~~~ADIvVsAvG----kp~~  216 (294)
T PRK14187        155 TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT--------------RDLADYCSKADILVAAVG----IPNF  216 (294)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccC----CcCc
Confidence            457999999999965 689999999999999999887532              367888999999999997    2356


Q ss_pred             ccHHHHccCCCCCEEEEcCCCc
Q 026360          110 FDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg~  131 (240)
                      +..+.   .|+|+++||+|-..
T Consensus       217 i~~~~---ik~gaiVIDVGin~  235 (294)
T PRK14187        217 VKYSW---IKKGAIVIDVGINS  235 (294)
T ss_pred             cCHHH---cCCCCEEEEecccc
Confidence            77665   58999999998544

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=97.93  E-value=5.7e-05  Score=65.56  Aligned_cols=103  Identities=17%  Similarity=0.234  Sum_probs=66.6

Q ss_pred             CeEEEEccChHHHHHHHHhccC---CCEEE-EEcCCCCChhHHHhcCceecCCHHhh-cCcCCEEEEcCCCChhhhhccc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPF---NCNLL-YHDRVKMDPQLEKETGAKFEEDLDTM-LPKCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~---G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~el-l~~aDiVvl~lp~~~~t~~~i~  111 (240)
                      .+|||||+|.||+.+++.+..-   ++++. ++++.+...+.... .+..+.+++++ ....|+|+=|..  ++.   +-
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~-~~~~~~~l~~ll~~~~DlVVE~A~--~~a---v~   76 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAG-RVALLDGLPGLLAWRPDLVVEAAG--QQA---IA   76 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhc-cCcccCCHHHHhhcCCCEEEECCC--HHH---HH
Confidence            6899999999999999998653   35644 45654322222222 25567789997 588999999886  221   11


Q ss_pred             HHHHccCCCCCEEEEcCCCcccC---HHHHHHHHHhC
Q 026360          112 KDRIAKMKKGVLIVNNARGAIMD---TQAVVDACSSG  145 (240)
Q Consensus       112 ~~~l~~mk~gailIN~srg~~vd---~~aL~~aL~~g  145 (240)
                      +--.+-++.|.-++=+|-|.+.|   .+.|.++.+++
T Consensus        77 e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~  113 (267)
T PRK13301         77 EHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAG  113 (267)
T ss_pred             HHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhC
Confidence            11223356677777788888887   44555555543

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=97.93  E-value=4.9e-05  Score=67.20  Aligned_cols=80  Identities=19%  Similarity=0.259  Sum_probs=66.2

Q ss_pred             ccccCCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|+.++..              ..++++.+++||+|+.++.-    .++
T Consensus       162 ~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~--------------T~nl~~~~~~ADIvv~AvGk----~~~  223 (299)
T PLN02516        162 GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR--------------TPDPESIVREADIVIAAAGQ----AMM  223 (299)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCC----cCc
Confidence            457999999999975 68999999999999999988752              13688899999999999873    367


Q ss_pred             ccHHHHccCCCCCEEEEcCCCc
Q 026360          110 FDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg~  131 (240)
                      +..+.   .|+|+++||+|--.
T Consensus       224 i~~~~---vk~gavVIDvGin~  242 (299)
T PLN02516        224 IKGDW---IKPGAAVIDVGTNA  242 (299)
T ss_pred             cCHHH---cCCCCEEEEeeccc
Confidence            77665   58999999998543

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.93  E-value=5.5e-05  Score=66.67  Aligned_cols=71  Identities=24%  Similarity=0.215  Sum_probs=53.0

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHH-Hhc----C-c--eecCCHHhhcCcCCEEEEcCCCC
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLE-KET----G-A--KFEEDLDTMLPKCDIVVVNTPLT  103 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~-~~~----g-~--~~~~~l~ell~~aDiVvl~lp~~  103 (240)
                      .+.++++.|+|.|.+|++++..|...|+ +|+++||+..+.+.. ..+    . .  ...+++.+.++++|+||.++|..
T Consensus       124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G  203 (284)
T PRK12549        124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG  203 (284)
T ss_pred             CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence            5788999999999999999999999998 699999975443322 221    1 1  11234556778899999999853

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=97.92  E-value=0.0001  Score=72.69  Aligned_cols=115  Identities=14%  Similarity=0.046  Sum_probs=82.2

Q ss_pred             CeEEEEccChHHHHHHHHhc-cCCCEEEEEcCCCCChhHHH-----------h-------------cCceecCCHHhhcC
Q 026360           37 KTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEK-----------E-------------TGAKFEEDLDTMLP   91 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~-~~G~~V~~~d~~~~~~~~~~-----------~-------------~g~~~~~~l~ell~   91 (240)
                      ++|+|||.|.||..+|..+. ..|++|+.+|+++...+...           +             ..+...++++ .++
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~  383 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYR-GFK  383 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH-Hhc
Confidence            58999999999999999887 58999999998753211110           0             1123445664 578


Q ss_pred             cCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCC
Q 026360           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (240)
Q Consensus        92 ~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~  155 (240)
                      +||+|+=++|-+.+.+.-+..+.-+.++++++|...+  +-+....|.+.++. .-+..++.-|
T Consensus       384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnT--S~l~i~~la~~~~~-p~r~~g~Hff  444 (699)
T TIGR02440       384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNT--SSLPIGQIAAAASR-PENVIGLHYF  444 (699)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCC--CCCCHHHHHHhcCC-cccEEEEecC
Confidence            9999999999888888888778778889998886544  34566677777743 3344566633

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=97.92  E-value=5.7e-05  Score=71.23  Aligned_cols=72  Identities=24%  Similarity=0.336  Sum_probs=52.3

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHH-HhcCceecCCHHhh--cCcCCEEEEcCCCC
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETGAKFEEDLDTM--LPKCDIVVVNTPLT  103 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~-~~~g~~~~~~l~el--l~~aDiVvl~lp~~  103 (240)
                      +.++.+++++|+|.|.+|++++..+...|++|++++++..+.+.. ...+.... +++++  +.++|+|++|+|..
T Consensus       327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~-~~~~~~~l~~~DiVInatP~g  401 (477)
T PRK09310        327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAF-PLESLPELHRIDIIINCLPPS  401 (477)
T ss_pred             CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccee-chhHhcccCCCCEEEEcCCCC
Confidence            346789999999999999999999999999999999865333222 22222211 22322  57899999999954

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.92  E-value=4.7e-05  Score=66.95  Aligned_cols=79  Identities=22%  Similarity=0.301  Sum_probs=65.2

Q ss_pred             ccccCCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      +.++.||++.|||-+ .+|+.++..|...|+.|+.++...              .++.+.+++||+|++++.    -.++
T Consensus       154 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T--------------~~L~~~~~~ADIvV~AvG----kp~~  215 (288)
T PRK14171        154 EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT--------------HNLSSITSKADIVVAAIG----SPLK  215 (288)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccC----CCCc
Confidence            457999999999975 689999999999999999887421              368888999999999997    2367


Q ss_pred             ccHHHHccCCCCCEEEEcCCC
Q 026360          110 FDKDRIAKMKKGVLIVNNARG  130 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg  130 (240)
                      +..+.   .|+|+++||+|-.
T Consensus       216 i~~~~---vk~GavVIDvGin  233 (288)
T PRK14171        216 LTAEY---FNPESIVIDVGIN  233 (288)
T ss_pred             cCHHH---cCCCCEEEEeecc
Confidence            77665   5899999999943

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.91  E-value=4.7e-05  Score=68.65  Aligned_cols=80  Identities=13%  Similarity=0.226  Sum_probs=66.1

Q ss_pred             ccccCCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|+.+....              .++++.+++||+|+.+++    ..++
T Consensus       226 ~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T--------------~nl~~~~r~ADIVIsAvG----kp~~  287 (364)
T PLN02616        226 NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITREADIIISAVG----QPNM  287 (364)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC--------------CCHHHHHhhCCEEEEcCC----CcCc
Confidence            457999999999964 689999999999999999887421              368888999999999997    3466


Q ss_pred             ccHHHHccCCCCCEEEEcCCCc
Q 026360          110 FDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg~  131 (240)
                      +..+.   .|+|+++||+|-..
T Consensus       288 i~~d~---vK~GAvVIDVGIn~  306 (364)
T PLN02616        288 VRGSW---IKPGAVVIDVGINP  306 (364)
T ss_pred             CCHHH---cCCCCEEEeccccc
Confidence            77765   58999999999543

>PRK06046 alanine dehydrogenase; Validated

Probab=97.91  E-value=3.8e-05  Score=68.94  Aligned_cols=88  Identities=26%  Similarity=0.431  Sum_probs=64.8

Q ss_pred             CCCeEEEEccChHHHHHHHHhcc-CCC-EEEEEcCCCCChhHHH-h----cC--ceecCCHHhhcCcCCEEEEcCCCChh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQLEK-E----TG--AKFEEDLDTMLPKCDIVVVNTPLTEK  105 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~-~G~-~V~~~d~~~~~~~~~~-~----~g--~~~~~~l~ell~~aDiVvl~lp~~~~  105 (240)
                      .-+++||||.|.+|+..++.+.. .+. +|.+||+++...+.+. .    .+  +..+++++++++ +|+|++++|..  
T Consensus       128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~--  204 (326)
T PRK06046        128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR--  204 (326)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC--
Confidence            35799999999999999988864 455 4788999764433322 1    24  344678899987 99999999854  


Q ss_pred             hhhcccHHHHccCCCCCEEEEcCC
Q 026360          106 TRGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailIN~sr  129 (240)
                       ..++..+.   +|+|+.+..+|.
T Consensus       205 -~P~~~~~~---l~~g~hV~~iGs  224 (326)
T PRK06046        205 -KPVVKAEW---IKEGTHINAIGA  224 (326)
T ss_pred             -CcEecHHH---cCCCCEEEecCC
Confidence             35666554   589999888884

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.91  E-value=0.00015  Score=64.94  Aligned_cols=158  Identities=12%  Similarity=0.155  Sum_probs=115.9

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh---cC--ceecCCHHhhc---CcCCEEEEcCCCChhhhh
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE---TG--AKFEEDLDTML---PKCDIVVVNTPLTEKTRG  108 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~---~g--~~~~~~l~ell---~~aDiVvl~lp~~~~t~~  108 (240)
                      ..||+||++.||+.++......|+.|.+|+|+..+.+.+..   .|  +....++++++   +.-..|++.+........
T Consensus         7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~   86 (487)
T KOG2653|consen    7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ   86 (487)
T ss_pred             cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence            46899999999999999999999999999998655443321   12  23345777764   556677777754444444


Q ss_pred             cccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHHH
Q 026360          109 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQVI  188 (240)
Q Consensus       109 ~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nv~~TPH~a~~t~~~~~~  188 (240)
                      +| ++....|.+|-+||+-+...--|+..-.+.|.+..|.+.+.-|...|.-....|-+          +-|.+.+++..
T Consensus        87 ~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSl----------MpGg~~~Awp~  155 (487)
T KOG2653|consen   87 FI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSL----------MPGGSKEAWPH  155 (487)
T ss_pred             HH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCcc----------CCCCChHHHHH
Confidence            44 46778899999999999999999999999999999999999998887644333321          22677888888


Q ss_pred             hhhhHHHHHHHHHHH-ccCCC
Q 026360          189 VHFFPVFMRLFTSFL-SHKSN  208 (240)
Q Consensus       189 ~~~~~~~~~~~~~~~-~g~~~  208 (240)
                      +..  .+ ..|.+-. .|+|+
T Consensus       156 ik~--if-q~iaakv~~~epC  173 (487)
T KOG2653|consen  156 IKD--IF-QKIAAKVSDGEPC  173 (487)
T ss_pred             HHH--HH-HHHHHHhcCCCCC
Confidence            766  43 3444443 44554

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.91  E-value=5.7e-05  Score=66.24  Aligned_cols=80  Identities=19%  Similarity=0.238  Sum_probs=65.8

Q ss_pred             ccccCCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|+.++...              .++++..++||+|+++++-    .++
T Consensus       152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T--------------~nl~~~~~~ADIvI~AvGk----~~~  213 (282)
T PRK14182        152 RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT--------------ADLAGEVGRADILVAAIGK----AEL  213 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCC----cCc
Confidence            457999999999965 689999999999999999886521              3678889999999999972    467


Q ss_pred             ccHHHHccCCCCCEEEEcCCCc
Q 026360          110 FDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg~  131 (240)
                      +..+.   .|+|+++||+|-..
T Consensus       214 i~~~~---ik~gaiVIDvGin~  232 (282)
T PRK14182        214 VKGAW---VKEGAVVIDVGMNR  232 (282)
T ss_pred             cCHHH---cCCCCEEEEeecee
Confidence            77665   58999999998544

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=97.90  E-value=0.00012  Score=72.31  Aligned_cols=115  Identities=13%  Similarity=0.129  Sum_probs=82.9

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH-----------hc-------------CceecCCHHhhcCc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-----------ET-------------GAKFEEDLDTMLPK   92 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~-----------~~-------------g~~~~~~l~ell~~   92 (240)
                      ++|+|||.|.||..+|..+...|++|+.+|+++...+...           +.             .+....+++ .+++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  392 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYA-GFDN  392 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-HhcC
Confidence            5899999999999999999999999999998754322110           00             123344553 4689


Q ss_pred             CCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCC
Q 026360           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (240)
Q Consensus        93 aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~  155 (240)
                      ||+|+=++|-+.+.+.-+..+.-+.++|+++|-..+  +-++..+|...++. .=+..++--|
T Consensus       393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnT--S~l~i~~ia~~~~~-p~r~ig~Hff  452 (714)
T TIGR02437       393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNT--STISISLLAKALKR-PENFCGMHFF  452 (714)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECC--CCCCHHHHHhhcCC-cccEEEEecC
Confidence            999999999888888878778878899999885544  44666777777753 3333455533

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.90  E-value=6e-05  Score=66.21  Aligned_cols=80  Identities=19%  Similarity=0.258  Sum_probs=65.6

Q ss_pred             ccccCCCeEEEEcc-ChHHHHHHHHhcc--CCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhh
Q 026360           31 AYDLEGKTVGTVGC-GRIGKLLLQRLKP--FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        31 ~~~l~g~~vgIIG~-G~iG~~~A~~l~~--~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~  107 (240)
                      +.++.||++.|||- +.+|+.+|..|..  .++.|+.+...              ..++++.+++||+|+++++-    .
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~--------------T~~l~~~~k~ADIvV~AvGk----p  214 (284)
T PRK14193        153 DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG--------------TRDLAAHTRRADIIVAAAGV----A  214 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC--------------CCCHHHHHHhCCEEEEecCC----c
Confidence            45789999999996 5789999999987  78999888752              13688889999999999972    3


Q ss_pred             hcccHHHHccCCCCCEEEEcCCCc
Q 026360          108 GMFDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~srg~  131 (240)
                      +++..+.   +|+|+++||+|...
T Consensus       215 ~~i~~~~---ik~GavVIDvGin~  235 (284)
T PRK14193        215 HLVTADM---VKPGAAVLDVGVSR  235 (284)
T ss_pred             CccCHHH---cCCCCEEEEccccc
Confidence            5677665   58999999999655

>PTZ00117 malate dehydrogenase; Provisional

Probab=97.90  E-value=7.4e-05  Score=66.89  Aligned_cols=117  Identities=17%  Similarity=0.261  Sum_probs=71.3

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCC-CEEEEEcCCCCChhH-HH--h-----cC----ceecCCHHhhcCcCCEEEEcC
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQL-EK--E-----TG----AKFEEDLDTMLPKCDIVVVNT  100 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G-~~V~~~d~~~~~~~~-~~--~-----~g----~~~~~~l~ell~~aDiVvl~l  100 (240)
                      +..++|+|||.|.+|..+|..+...| .++..+|.+....+. +.  .     .+    +....+.+ .+++||+|+++.
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita   81 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA   81 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence            45789999999999999999988777 689999986532211 11  0     11    12224666 679999999998


Q ss_pred             --CCChh-h--------hhccc--HHHHccCCCCCEEEEcCCCcccCHHHHHHHHH--hCCccEEE
Q 026360          101 --PLTEK-T--------RGMFD--KDRIAKMKKGVLIVNNARGAIMDTQAVVDACS--SGHIAGYS  151 (240)
Q Consensus       101 --p~~~~-t--------~~~i~--~~~l~~mk~gailIN~srg~~vd~~aL~~aL~--~g~i~ga~  151 (240)
                        |..+. +        ..++.  .+.+....|.+++++++...=+-...+.+.-.  ..++.|.+
T Consensus        82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g  147 (319)
T PTZ00117         82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA  147 (319)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence              43320 0        01110  12334456888999987544333334444322  35666555

>PRK14031 glutamate dehydrogenase; Provisional

Probab=97.89  E-value=0.00011  Score=68.38  Aligned_cols=111  Identities=17%  Similarity=0.271  Sum_probs=72.6

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCC--------CChhHH------------------HhcCceecC
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK--------MDPQLE------------------KETGAKFEE   84 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~--------~~~~~~------------------~~~g~~~~~   84 (240)
                      +.+|.|++|.|.|+|++|...|+.|..+|++|++++.+.        .+.+..                  ...++... 
T Consensus       223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i-  301 (444)
T PRK14031        223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYV-  301 (444)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEc-
Confidence            457999999999999999999999999999998844311        111100                  01133333 


Q ss_pred             CHHhhc-CcCCEEEEcCCCChhhhhcccHHHHccCCC-CCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360           85 DLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMKK-GVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus        85 ~l~ell-~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~-gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      +.++++ ..||+++-|.     +.+.|+.+...+++. +..+|--+-..+...++.. .|.++.|.
T Consensus       302 ~~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~P~t~eA~~-~L~~rgI~  361 (444)
T PRK14031        302 EGARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANMPSTPEAIK-VFQDAKIL  361 (444)
T ss_pred             CCcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCCCCCHHHHH-HHHHCCcE
Confidence            334443 4699888776     478888888888864 4545555554477777664 44444444

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.89  E-value=4.3e-05  Score=64.51  Aligned_cols=97  Identities=29%  Similarity=0.461  Sum_probs=67.0

Q ss_pred             CeEEEEccChHHHHHHHHhccC--CCE-EEEEcCCCCChh-HHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPF--NCN-LLYHDRVKMDPQ-LEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~--G~~-V~~~d~~~~~~~-~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~  112 (240)
                      ++|||||+|.||+.+.+.++.-  .++ +.+||++..+.. .....+.....+++|++++.|+++=|.. .+..+..   
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS-~~Av~e~---   76 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAAS-PEAVREY---   76 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCC-HHHHHHH---
Confidence            4799999999999999999853  455 788998764433 2334555556789999999999988875 1222222   


Q ss_pred             HHHccCCCCCEEEEcCCCcccCHHHH
Q 026360          113 DRIAKMKKGVLIVNNARGAIMDTQAV  138 (240)
Q Consensus       113 ~~l~~mk~gailIN~srg~~vd~~aL  138 (240)
                       ..+.++.|.=+|-+|-|.+.|+.-+
T Consensus        77 -~~~~L~~g~d~iV~SVGALad~~l~  101 (255)
T COG1712          77 -VPKILKAGIDVIVMSVGALADEGLR  101 (255)
T ss_pred             -hHHHHhcCCCEEEEechhccChHHH
Confidence             2233566665666777888866543

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.89  E-value=4.2e-05  Score=69.94  Aligned_cols=105  Identities=18%  Similarity=0.182  Sum_probs=71.4

Q ss_pred             CeEEEEccChHHHHHHHHhccCC-CEEEEEcCCCCChhHHHhcC---c-------eecCCHHhhcCcCCEEEEcCCCChh
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETG---A-------KFEEDLDTMLPKCDIVVVNTPLTEK  105 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G-~~V~~~d~~~~~~~~~~~~g---~-------~~~~~l~ell~~aDiVvl~lp~~~~  105 (240)
                      ++|.|||+|.||+.+|..|.+.| .+|++.||+..+...+....   +       .....+.+++++.|+|+.++|..  
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~--   79 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPF--   79 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCch--
Confidence            68999999999999999999988 89999999865544443321   1       22346678999999999999833  


Q ss_pred             hhhcccHHHH-ccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360          106 TRGMFDKDRI-AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       106 t~~~i~~~~l-~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                          ++...+ +.++.|.-.++++-.+-.- -++-+..++.++.
T Consensus        80 ----~~~~i~ka~i~~gv~yvDts~~~~~~-~~~~~~a~~Agit  118 (389)
T COG1748          80 ----VDLTILKACIKTGVDYVDTSYYEEPP-WKLDEEAKKAGIT  118 (389)
T ss_pred             ----hhHHHHHHHHHhCCCEEEcccCCchh-hhhhHHHHHcCeE
Confidence                222333 3456777777877554332 4444444444433

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.89  E-value=5.4e-05  Score=67.93  Aligned_cols=80  Identities=15%  Similarity=0.278  Sum_probs=65.8

Q ss_pred             ccccCCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|+.+....              .++++..++||+|+.+++    ..++
T Consensus       209 ~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T--------------~nl~~~~~~ADIvIsAvG----kp~~  270 (345)
T PLN02897        209 GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT--------------KDPEQITRKADIVIAAAG----IPNL  270 (345)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHHhhCCEEEEccC----CcCc
Confidence            457999999999975 689999999999999998887532              267888999999999997    2466


Q ss_pred             ccHHHHccCCCCCEEEEcCCCc
Q 026360          110 FDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg~  131 (240)
                      +..+.   +|+|+++||+|--.
T Consensus       271 v~~d~---vk~GavVIDVGin~  289 (345)
T PLN02897        271 VRGSW---LKPGAVVIDVGTTP  289 (345)
T ss_pred             cCHHH---cCCCCEEEEccccc
Confidence            77665   58999999999543

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.88  E-value=6.7e-05  Score=65.95  Aligned_cols=80  Identities=21%  Similarity=0.316  Sum_probs=65.0

Q ss_pred             ccccCCCeEEEEccC-hHHHHHHHHhccC----CCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChh
Q 026360           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPF----NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK  105 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~----G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~  105 (240)
                      +.++.||++.|||-+ .+|+.+|..|...    ++.|+.+....              .++++.+++||+|+++++-   
T Consensus       148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T--------------~~l~~~~~~ADIvV~AvG~---  210 (287)
T PRK14181        148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS--------------ENLTEILKTADIIIAAIGV---  210 (287)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCC---
Confidence            457999999999975 6899999999887    78898876421              3688889999999999972   


Q ss_pred             hhhcccHHHHccCCCCCEEEEcCCCc
Q 026360          106 TRGMFDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailIN~srg~  131 (240)
                       .+++..+.   .|+|+++||+|-..
T Consensus       211 -p~~i~~~~---ik~GavVIDvGin~  232 (287)
T PRK14181        211 -PLFIKEEM---IAEKAVIVDVGTSR  232 (287)
T ss_pred             -cCccCHHH---cCCCCEEEEecccc
Confidence             35677665   58999999999544

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.87  E-value=0.00013  Score=71.92  Aligned_cols=115  Identities=10%  Similarity=0.016  Sum_probs=83.6

Q ss_pred             CeEEEEccChHHHHHHHHhc-cCCCEEEEEcCCCCChhHHH-----------hc-------------CceecCCHHhhcC
Q 026360           37 KTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQLEK-----------ET-------------GAKFEEDLDTMLP   91 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~-~~G~~V~~~d~~~~~~~~~~-----------~~-------------g~~~~~~l~ell~   91 (240)
                      ++|+|||.|.||..+|..+. ..|++|+.+|+++...+...           +.             .+...+++ +.++
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  388 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK  388 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence            68999999999999999988 78999999998753221110           00             12334455 4578


Q ss_pred             cCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCC
Q 026360           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (240)
Q Consensus        92 ~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~  155 (240)
                      +||+|+=++|-+.+.+.-+..+.-+.++|+++|...+  +-+....|.+.++. .-+.+++.-|
T Consensus       389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnT--S~l~i~~la~~~~~-p~r~ig~Hff  449 (708)
T PRK11154        389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNT--SSLPIGQIAAAAAR-PEQVIGLHYF  449 (708)
T ss_pred             cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECC--CCCCHHHHHHhcCc-ccceEEEecC
Confidence            9999999999888888888778778899999986544  44667777777743 3344566643

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=97.87  E-value=0.0001  Score=73.06  Aligned_cols=115  Identities=13%  Similarity=0.081  Sum_probs=84.0

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH-----------hc-------------CceecCCHHhhcCc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-----------ET-------------GAKFEEDLDTMLPK   92 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~-----------~~-------------g~~~~~~l~ell~~   92 (240)
                      ++|+|||.|.||..+|..+...|++|+.+|+++...+...           +.             .+....+++ .+++
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~  414 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN  414 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence            5899999999999999999999999999998754322100           00             123345665 5689


Q ss_pred             CCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCC
Q 026360           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (240)
Q Consensus        93 aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~  155 (240)
                      ||+|+=++|-+.+.+.-+..+.-+.++++++|...  -+-++..+|.+.++. .-+..++.-|
T Consensus       415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasN--TSsl~i~~la~~~~~-p~r~ig~Hff  474 (737)
T TIGR02441       415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASN--TSALPIKDIAAVSSR-PEKVIGMHYF  474 (737)
T ss_pred             CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEc--CCCCCHHHHHhhcCC-ccceEEEecc
Confidence            99999999988888888888887889999988543  344667777777754 3344566644

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.86  E-value=6.3e-05  Score=67.81  Aligned_cols=98  Identities=30%  Similarity=0.414  Sum_probs=69.6

Q ss_pred             ccccCCCeEEEEcc-ChHHHHHHHHhcc-CC-CEEEEEcCCCCChhH-HHhcCceecCCHHhhcCcCCEEEEcCCCChhh
Q 026360           31 AYDLEGKTVGTVGC-GRIGKLLLQRLKP-FN-CNLLYHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKT  106 (240)
Q Consensus        31 ~~~l~g~~vgIIG~-G~iG~~~A~~l~~-~G-~~V~~~d~~~~~~~~-~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t  106 (240)
                      +.+++|+++.|+|. |.||+.+++.|.. .| .+++.++|+...... ..+++.....++++.+.++|+|+.++...   
T Consensus       150 g~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~---  226 (340)
T PRK14982        150 GIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMP---  226 (340)
T ss_pred             ccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCC---
Confidence            34689999999998 8999999999974 56 478899986533332 22232112346889999999998776432   


Q ss_pred             hh-cccHHHHccCCCCCEEEEcCCCcccC
Q 026360          107 RG-MFDKDRIAKMKKGVLIVNNARGAIMD  134 (240)
Q Consensus       107 ~~-~i~~~~l~~mk~gailIN~srg~~vd  134 (240)
                      .. .++.+.   ++++.++||+|+..=||
T Consensus       227 ~~~~I~~~~---l~~~~~viDiAvPRDVd  252 (340)
T PRK14982        227 KGVEIDPET---LKKPCLMIDGGYPKNLD  252 (340)
T ss_pred             cCCcCCHHH---hCCCeEEEEecCCCCCC
Confidence            23 366654   48999999999776444

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=97.85  E-value=0.0003  Score=60.91  Aligned_cols=109  Identities=17%  Similarity=0.237  Sum_probs=72.4

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEEEE-cC-------CCCChhHH------H-hc------------CceecC
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH-DR-------VKMDPQLE------K-ET------------GAKFEE   84 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~-d~-------~~~~~~~~------~-~~------------g~~~~~   84 (240)
                      .+++|+++.|.|+|++|+.+|+.|...|++|+++ |.       ...+.+..      + ..            +.+.. 
T Consensus        34 ~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~-  112 (254)
T cd05313          34 ETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF-  112 (254)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe-
Confidence            4689999999999999999999999999998844 42       11111111      0 11            13333 


Q ss_pred             CHHhh-cCcCCEEEEcCCCChhhhhcccHHHHccCC-CCC-EEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360           85 DLDTM-LPKCDIVVVNTPLTEKTRGMFDKDRIAKMK-KGV-LIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus        85 ~l~el-l~~aDiVvl~lp~~~~t~~~i~~~~l~~mk-~ga-ilIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      +.+++ -.+||+++-|.     +.+.|+.+...+++ +++ +|+-.+.+++ .. +-.+.|.++.+.
T Consensus       113 ~~~~~~~~~~DIliPcA-----l~~~I~~~na~~i~~~~ak~I~EgAN~p~-t~-~a~~~L~~rGI~  172 (254)
T cd05313         113 EGKKPWEVPCDIAFPCA-----TQNEVDAEDAKLLVKNGCKYVAEGANMPC-TA-EAIEVFRQAGVL  172 (254)
T ss_pred             CCcchhcCCCcEEEecc-----ccccCCHHHHHHHHHcCCEEEEeCCCCCC-CH-HHHHHHHHCCcE
Confidence            33333 35699998886     47888888888774 234 5555555655 44 455778777776

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PRK06444 prephenate dehydrogenase; Provisional

Probab=97.85  E-value=6.2e-05  Score=62.85  Aligned_cols=62  Identities=18%  Similarity=0.230  Sum_probs=46.7

Q ss_pred             CeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHH
Q 026360           37 KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  115 (240)
Q Consensus        37 ~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l  115 (240)
                      ++++|||- |.||+.++..+++.|+.|.                          +++||+|++|+|.. .+.     +.+
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavPv~-~~~-----~~i   48 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVPID-AAL-----NYI   48 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCCHH-HHH-----HHH
Confidence            47999997 9999999999999999985                          36899999999932 222     223


Q ss_pred             ccCCCCCEEEEcCCCcc
Q 026360          116 AKMKKGVLIVNNARGAI  132 (240)
Q Consensus       116 ~~mk~gailIN~srg~~  132 (240)
                      +.+.  .+++|++.-+-
T Consensus        49 ~~~~--~~v~Dv~SvK~   63 (197)
T PRK06444         49 ESYD--NNFVEISSVKW   63 (197)
T ss_pred             HHhC--CeEEeccccCH
Confidence            3333  37999986543

>PRK08291 ectoine utilization protein EutC; Validated

Probab=97.83  E-value=6.5e-05  Score=67.53  Aligned_cols=88  Identities=16%  Similarity=0.278  Sum_probs=63.3

Q ss_pred             CCCeEEEEccChHHHHHHHHhcc-CC-CEEEEEcCCCCChhHHHh-----cCce--ecCCHHhhcCcCCEEEEcCCCChh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKP-FN-CNLLYHDRVKMDPQLEKE-----TGAK--FEEDLDTMLPKCDIVVVNTPLTEK  105 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~-~G-~~V~~~d~~~~~~~~~~~-----~g~~--~~~~l~ell~~aDiVvl~lp~~~~  105 (240)
                      ..++++|||.|.+|+..+..+.. .+ -+|.+|+|++.+.+.+.+     .|+.  ..++++++++++|+|+.++|..  
T Consensus       131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~--  208 (330)
T PRK08291        131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE--  208 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC--
Confidence            45899999999999998888874 45 469999998654443322     2443  3578899999999999999853  


Q ss_pred             hhhcccHHHHccCCCCCEEEEcC
Q 026360          106 TRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailIN~s  128 (240)
                       ..++..+.   +++|+.+..++
T Consensus       209 -~p~i~~~~---l~~g~~v~~vg  227 (330)
T PRK08291        209 -EPILKAEW---LHPGLHVTAMG  227 (330)
T ss_pred             -CcEecHHH---cCCCceEEeeC
Confidence             34555443   57887766654

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=97.83  E-value=3.3e-05  Score=61.04  Aligned_cols=109  Identities=17%  Similarity=0.209  Sum_probs=71.6

Q ss_pred             EEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec--------------CCHHhhcCcCCEEEEcCCCCh
Q 026360           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--------------EDLDTMLPKCDIVVVNTPLTE  104 (240)
Q Consensus        39 vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~--------------~~l~ell~~aDiVvl~lp~~~  104 (240)
                      |+|+|.|.||..+|..|+..|.+|..+++.+ ..+...+.|+...              .+..+.....|+|++|+... 
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~-   78 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAY-   78 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGG-
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEeccc-
Confidence            6899999999999999999999999999865 3444444443221              11124567899999999743 


Q ss_pred             hhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEE
Q 026360          105 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS  151 (240)
Q Consensus       105 ~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~  151 (240)
                      ++...+. .....+.+++.++-.--| +-.++.+.+.+...++.++.
T Consensus        79 ~~~~~l~-~l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~  123 (151)
T PF02558_consen   79 QLEQALQ-SLKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGV  123 (151)
T ss_dssp             GHHHHHH-HHCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEE
T ss_pred             chHHHHH-HHhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEE
Confidence            3334333 344555677677766555 55566777676555565443

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.82  E-value=8.2e-05  Score=65.39  Aligned_cols=78  Identities=22%  Similarity=0.250  Sum_probs=64.5

Q ss_pred             ccccCCCeEEEEccC-hHHHHHHHHhcc----CCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChh
Q 026360           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKP----FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK  105 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~----~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~  105 (240)
                      +.++.||++.|||-+ .+|+.++..|..    .++.|+.++...              .++.+.+++||+|+.+++    
T Consensus       152 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t--------------~~l~~~~~~ADIVI~AvG----  213 (286)
T PRK14184        152 GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT--------------PDLAEECREADFLFVAIG----  213 (286)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecC----
Confidence            457999999999965 689999999988    788998877431              368889999999999996    


Q ss_pred             hhhcccHHHHccCCCCCEEEEcCC
Q 026360          106 TRGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailIN~sr  129 (240)
                      ..+++..+.+   |+|+++||+|-
T Consensus       214 ~p~li~~~~v---k~GavVIDVGi  234 (286)
T PRK14184        214 RPRFVTADMV---KPGAVVVDVGI  234 (286)
T ss_pred             CCCcCCHHHc---CCCCEEEEeee
Confidence            3466777665   99999999983

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.81  E-value=7.1e-05  Score=62.63  Aligned_cols=96  Identities=23%  Similarity=0.243  Sum_probs=68.7

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCC---CCChh-------------------HHHhc--Cce--e--
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV---KMDPQ-------------------LEKET--GAK--F--   82 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~---~~~~~-------------------~~~~~--g~~--~--   82 (240)
                      ..|..++|+|+|+|.+|..+|..|...|. +++.+|++   .....                   .....  .+.  .  
T Consensus        17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~   96 (200)
T TIGR02354        17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD   96 (200)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence            46899999999999999999999999998 69999987   21100                   00010  011  1  


Q ss_pred             ----cCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcC
Q 026360           83 ----EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus        83 ----~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                          .++++++++++|+|+.+ ..+.+++..+..+....+++..++...+
T Consensus        97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~g  145 (200)
T TIGR02354        97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAASG  145 (200)
T ss_pred             eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEec
Confidence                02345678899999988 5788889888888888787766666433

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=97.80  E-value=9.1e-05  Score=65.91  Aligned_cols=116  Identities=22%  Similarity=0.235  Sum_probs=71.9

Q ss_pred             CeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChh-HHHh---------c--CceecCCHHhhcCcCCEEEEcCCCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-LEKE---------T--GAKFEEDLDTMLPKCDIVVVNTPLT  103 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~-~~~~---------~--g~~~~~~l~ell~~aDiVvl~lp~~  103 (240)
                      ++|+|||.|.||..+|..+...|. +|+.+|....... ...+         .  .+....+.++ +++||+|+++++..
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p   80 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP   80 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence            589999999999999999988775 8999998543221 1110         0  1223356776 78999999998732


Q ss_pred             hh-----------hhhccc--HHHHccCCCCCEEEEcCCCcccCHHHHHHH--HHhCCccEEE--ee
Q 026360          104 EK-----------TRGMFD--KDRIAKMKKGVLIVNNARGAIMDTQAVVDA--CSSGHIAGYS--GD  153 (240)
Q Consensus       104 ~~-----------t~~~i~--~~~l~~mk~gailIN~srg~~vd~~aL~~a--L~~g~i~ga~--lD  153 (240)
                      ..           +..++.  .+.+....+++++|+++..-=+-...+.+.  +...++.|.+  ||
T Consensus        81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld  147 (305)
T TIGR01763        81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD  147 (305)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence            11           111221  122333457899999986543334444444  4455666665  56

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=97.80  E-value=9.7e-05  Score=66.46  Aligned_cols=90  Identities=7%  Similarity=0.134  Sum_probs=60.3

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~  111 (240)
                      ++.|+++.|||.|.||+.+|+.|...|. +|++.+|+....+. ...   .. ..-+...++|+|+.+...|......+.
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~-~~~---~~-~~~~~~~~~DvVIs~t~~Tas~~p~i~  245 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPY-RTV---VR-EELSFQDPYDVIFFGSSESAYAFPHLS  245 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccch-hhh---hh-hhhhcccCCCEEEEcCCcCCCCCceee
Confidence            5899999999999999999999999996 59999997632111 100   00 111446789999987433333345556


Q ss_pred             HHHHccCCCCCEEEEcC
Q 026360          112 KDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       112 ~~~l~~mk~gailIN~s  128 (240)
                      .+.++..++ .++||.+
T Consensus       246 ~~~~~~~~~-r~~iDLA  261 (338)
T PRK00676        246 WESLADIPD-RIVFDFN  261 (338)
T ss_pred             HHHHhhccC-cEEEEec
Confidence            555554332 3788876

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.79  E-value=0.00011  Score=65.01  Aligned_cols=80  Identities=16%  Similarity=0.275  Sum_probs=64.4

Q ss_pred             ccccCCCeEEEEcc-ChHHHHHHHHhccC----CCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChh
Q 026360           31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPF----NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK  105 (240)
Q Consensus        31 ~~~l~g~~vgIIG~-G~iG~~~A~~l~~~----G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~  105 (240)
                      +.++.||++.|||- ..+|+.+|..|...    ++.|+.+....              .++++.+++||+|+.++.    
T Consensus       156 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T--------------~~l~~~~~~ADIvVsAvG----  217 (297)
T PRK14168        156 GVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS--------------KNLARHCQRADILIVAAG----  217 (297)
T ss_pred             CCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC--------------cCHHHHHhhCCEEEEecC----
Confidence            46799999999996 57899999999876    68898876421              368888999999999986    


Q ss_pred             hhhcccHHHHccCCCCCEEEEcCCCc
Q 026360          106 TRGMFDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailIN~srg~  131 (240)
                      ..+++..+.   .|+|+++||+|...
T Consensus       218 kp~~i~~~~---ik~gavVIDvGin~  240 (297)
T PRK14168        218 VPNLVKPEW---IKPGATVIDVGVNR  240 (297)
T ss_pred             CcCccCHHH---cCCCCEEEecCCCc
Confidence            235677665   58999999999544

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=97.78  E-value=3.9e-05  Score=58.08  Aligned_cols=65  Identities=26%  Similarity=0.428  Sum_probs=51.2

Q ss_pred             eEEEEccChHHHHHHHHhccC--CCEEE-EEcCCCCChhH-HHhcCceecCCHHhhcC--cCCEEEEcCCC
Q 026360           38 TVGTVGCGRIGKLLLQRLKPF--NCNLL-YHDRVKMDPQL-EKETGAKFEEDLDTMLP--KCDIVVVNTPL  102 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~~~--G~~V~-~~d~~~~~~~~-~~~~g~~~~~~l~ell~--~aDiVvl~lp~  102 (240)
                      ++||||+|.+|+.....+...  +.++. ++|+++...+. .+..|+..+++++++++  +.|+|++++|.
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~   72 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPP   72 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSG
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCC
Confidence            799999999999998877765  55654 67876543333 44578888889999998  79999999994

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK06823 ornithine cyclodeaminase; Validated

Probab=97.78  E-value=9.5e-05  Score=66.12  Aligned_cols=89  Identities=18%  Similarity=0.266  Sum_probs=66.4

Q ss_pred             CCCeEEEEccChHHHHHHHHhcc-CC-CEEEEEcCCCCChhHHH----hcC--ceecCCHHhhcCcCCEEEEcCCCChhh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKP-FN-CNLLYHDRVKMDPQLEK----ETG--AKFEEDLDTMLPKCDIVVVNTPLTEKT  106 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~-~G-~~V~~~d~~~~~~~~~~----~~g--~~~~~~l~ell~~aDiVvl~lp~~~~t  106 (240)
                      .-++++|||.|..|+..++.+.. +. -+|.+|+|++.+.+.+.    ..+  +..+++.++++++||+|+.++|.+   
T Consensus       127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~---  203 (315)
T PRK06823        127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSR---  203 (315)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCC---
Confidence            46799999999999999887764 23 36999999875544222    223  334678999999999999998743   


Q ss_pred             hhcccHHHHccCCCCCEEEEcCC
Q 026360          107 RGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       107 ~~~i~~~~l~~mk~gailIN~sr  129 (240)
                      ..++..+.   +|||+.++.+|.
T Consensus       204 ~P~~~~~~---l~~G~hi~~iGs  223 (315)
T PRK06823        204 EPLLQAED---IQPGTHITAVGA  223 (315)
T ss_pred             CceeCHHH---cCCCcEEEecCC
Confidence            46666554   689999999974

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.78  E-value=9.9e-05  Score=65.23  Aligned_cols=79  Identities=18%  Similarity=0.328  Sum_probs=63.8

Q ss_pred             ccccCCCeEEEEccC-hHHHHHHHHhcc----CCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChh
Q 026360           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKP----FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK  105 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~----~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~  105 (240)
                      +.++.||++.|||-+ .+|+.+|..|..    .|+.|.......              .++++.+++||+|+.+++.   
T Consensus       154 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t--------------~~l~~~~~~ADIvI~Avg~---  216 (295)
T PRK14174        154 NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT--------------KDIPSYTRQADILIAAIGK---  216 (295)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCc---
Confidence            457999999999975 689999999876    578888776432              2678889999999999962   


Q ss_pred             hhhcccHHHHccCCCCCEEEEcCCC
Q 026360          106 TRGMFDKDRIAKMKKGVLIVNNARG  130 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailIN~srg  130 (240)
                       .+++..+.+   |+|+++||+|-.
T Consensus       217 -~~li~~~~v---k~GavVIDVgi~  237 (295)
T PRK14174        217 -ARFITADMV---KPGAVVIDVGIN  237 (295)
T ss_pred             -cCccCHHHc---CCCCEEEEeecc
Confidence             267887776   999999999843

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=97.78  E-value=8.1e-05  Score=64.93  Aligned_cols=116  Identities=27%  Similarity=0.336  Sum_probs=83.0

Q ss_pred             ccccCCCeEEEEccCh-HHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~-iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      +.+|+|+++.|||-++ +|+.++..|...++.|++++...              .++.+..++||+|++++.    -.++
T Consensus       151 ~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T--------------~~l~~~~k~ADIvv~AvG----~p~~  212 (283)
T COG0190         151 GIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT--------------KDLASITKNADIVVVAVG----KPHF  212 (283)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC--------------CCHHHHhhhCCEEEEecC----Cccc
Confidence            4578999999999875 69999999999999999988632              377788999999999986    2356


Q ss_pred             ccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHHH
Q 026360          110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQVI  188 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nv~~TPH~a~~t~~~~~~  188 (240)
                      +..+.   .|+|+++|++|--.+-+          +++   .=||-.++..        ...-.+||=-||.-.=+...
T Consensus       213 i~~d~---vk~gavVIDVGinrv~~----------~kl---~GDVdf~~v~--------~~a~~iTPVPGGVGPmTvam  267 (283)
T COG0190         213 IKADM---VKPGAVVIDVGINRVND----------GKL---VGDVDFDSVK--------EKASAITPVPGGVGPMTVAM  267 (283)
T ss_pred             ccccc---ccCCCEEEecCCccccC----------Cce---EeeccHHHHH--------HhhcccCCCCCccCHHHHHH
Confidence            66443   69999999999554333          333   3465433321        12235788777776554433

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.78  E-value=0.00013  Score=64.43  Aligned_cols=80  Identities=16%  Similarity=0.287  Sum_probs=64.2

Q ss_pred             ccccCCCeEEEEccC-hHHHHHHHHhccC----CCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChh
Q 026360           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPF----NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK  105 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~----G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~  105 (240)
                      +.++.||++.|||-+ .+|+.+|..|...    ++.|+.+....              .++.+.+++||+|+++++-   
T Consensus       152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~nl~~~~~~ADIvIsAvGk---  214 (293)
T PRK14185        152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS--------------KNLKKECLEADIIIAALGQ---  214 (293)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC--------------CCHHHHHhhCCEEEEccCC---
Confidence            457999999999965 6899999999876    68888876421              3788889999999999972   


Q ss_pred             hhhcccHHHHccCCCCCEEEEcCCCc
Q 026360          106 TRGMFDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailIN~srg~  131 (240)
                       .+++..+.   .|+|+++||+|-..
T Consensus       215 -p~~i~~~~---vk~gavVIDvGin~  236 (293)
T PRK14185        215 -PEFVKADM---VKEGAVVIDVGTTR  236 (293)
T ss_pred             -cCccCHHH---cCCCCEEEEecCcc
Confidence             35677655   58999999998543

>PRK14030 glutamate dehydrogenase; Provisional

Probab=97.77  E-value=0.0003  Score=65.49  Aligned_cols=110  Identities=17%  Similarity=0.201  Sum_probs=75.1

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCCEEEE--------EcCCCCChhHH---H---------------hc-Cceec
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLY--------HDRVKMDPQLE---K---------------ET-GAKFE   83 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~--------~d~~~~~~~~~---~---------------~~-g~~~~   83 (240)
                      +.+|.|++|.|-|+|++|..+|+.|...|++|++        ||++..+.+..   .               .+ +.+..
T Consensus       223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i  302 (445)
T PRK14030        223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF  302 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc
Confidence            3478999999999999999999999999999998        77655443321   0               11 33333


Q ss_pred             CCHHhhc-CcCCEEEEcCCCChhhhhcccHHHHccCC-CCC-EEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360           84 EDLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMK-KGV-LIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus        84 ~~l~ell-~~aDiVvl~lp~~~~t~~~i~~~~l~~mk-~ga-ilIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                       +.++++ ..||+++-|.     +.+.|+.+....+. .++ +|+-.+.+ +++.++- +.|.++.|.
T Consensus       303 -~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI~  362 (445)
T PRK14030        303 -AGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQL  362 (445)
T ss_pred             -CCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCCE
Confidence             233444 4589888776     57888887777772 234 55555556 6666544 677777666

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=97.77  E-value=0.00015  Score=62.55  Aligned_cols=109  Identities=22%  Similarity=0.322  Sum_probs=75.3

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEE--------cCCCCChhHHH----hcCc-------------eecCCHH
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH--------DRVKMDPQLEK----ETGA-------------KFEEDLD   87 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~--------d~~~~~~~~~~----~~g~-------------~~~~~l~   87 (240)
                      +++|+++.|-|+|++|..+|+.|...|++|+++        |+...+.+...    +.+.             +.. +-+
T Consensus        29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~-~~~  107 (244)
T PF00208_consen   29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYI-PND  107 (244)
T ss_dssp             SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEE-CHH
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEe-ccc
Confidence            589999999999999999999999999998776        54432222221    1222             111 221


Q ss_pred             -hhc-CcCCEEEEcCCCChhhhhcccHHHHc-cCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360           88 -TML-PKCDIVVVNTPLTEKTRGMFDKDRIA-KMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus        88 -ell-~~aDiVvl~lp~~~~t~~~i~~~~l~-~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                       +++ .+||+++.|.-     .+.|+.+... .+++++-+|--+-...+..++.. .|++..|.
T Consensus       108 ~~il~~~~DiliP~A~-----~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~-~L~~rGI~  165 (244)
T PF00208_consen  108 DEILSVDCDILIPCAL-----GNVINEDNAPSLIKSGAKIIVEGANGPLTPEADE-ILRERGIL  165 (244)
T ss_dssp             CHGGTSSSSEEEEESS-----STSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHH-HHHHTT-E
T ss_pred             cccccccccEEEEcCC-----CCeeCHHHHHHHHhccCcEEEeCcchhccHHHHH-HHHHCCCE
Confidence             455 57999999963     5778888888 88877766666666666666665 88887776

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=97.75  E-value=0.00031  Score=62.86  Aligned_cols=107  Identities=16%  Similarity=0.192  Sum_probs=67.6

Q ss_pred             CeEEEEccChHHHHHHHHhccC-CCEEEE-EcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLLY-HDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~-G~~V~~-~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~  114 (240)
                      .+|||||+|+||+.+++.+... ++++.+ +|+++. .......++....+.++++.+.|+|++|+|....     -...
T Consensus         4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~-~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th-----~~~~   77 (324)
T TIGR01921         4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGA-ETLDTETPVYAVADDEKHLDDVDVLILCMGSATD-----IPEQ   77 (324)
T ss_pred             cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcH-HHHhhcCCccccCCHHHhccCCCEEEEcCCCccC-----HHHH
Confidence            6899999999999999998765 788765 677531 1222234544445777888999999999985422     1233


Q ss_pred             HccCCCCCEEEEcCCC--cccC-HHHHHHHHHh-CCccE
Q 026360          115 IAKMKKGVLIVNNARG--AIMD-TQAVVDACSS-GHIAG  149 (240)
Q Consensus       115 l~~mk~gailIN~srg--~~vd-~~aL~~aL~~-g~i~g  149 (240)
                      ...++.|.-+|+..--  .+.+ .+.+-++.++ |++.-
T Consensus        78 ~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsv  116 (324)
T TIGR01921        78 APYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSV  116 (324)
T ss_pred             HHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEE
Confidence            3445666667776432  1122 3344455554 56653

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK06199 ornithine cyclodeaminase; Validated

Probab=97.75  E-value=0.00011  Score=67.28  Aligned_cols=94  Identities=17%  Similarity=0.225  Sum_probs=68.3

Q ss_pred             CCCeEEEEccChHHHHHHHHhcc-CC--CEEEEEcCCCCChhHH-H----hc-C---ceecCCHHhhcCcCCEEEEcCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKP-FN--CNLLYHDRVKMDPQLE-K----ET-G---AKFEEDLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~-~G--~~V~~~d~~~~~~~~~-~----~~-g---~~~~~~l~ell~~aDiVvl~lp~  102 (240)
                      .-++++|||.|..|+..++.+.. +.  -+|.+|+|++.+.+.+ +    .. +   +..+++.++++++||+|+.+++.
T Consensus       154 da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s  233 (379)
T PRK06199        154 DSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSG  233 (379)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCC
Confidence            35799999999999999988765 32  3699999987543321 1    12 2   44567999999999999999975


Q ss_pred             Ch---hhhhcccHHHHccCCCCCEEEEcCCCc
Q 026360          103 TE---KTRGMFDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       103 ~~---~t~~~i~~~~l~~mk~gailIN~srg~  131 (240)
                      ++   .+..++..+.   +|||+.++.++.-+
T Consensus       234 ~~~~~s~~Pv~~~~~---lkpG~hv~~ig~~e  262 (379)
T PRK06199        234 ETGDPSTYPYVKREW---VKPGAFLLMPAACR  262 (379)
T ss_pred             CCCCCCcCcEecHHH---cCCCcEEecCCccc
Confidence            43   3346676554   58999887776543

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.74  E-value=9.1e-05  Score=62.08  Aligned_cols=91  Identities=15%  Similarity=0.165  Sum_probs=58.8

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCCh-hHHHhcC-ceec--CCHHhhcCcCCEEEEcCCCChhhh
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLEKETG-AKFE--EDLDTMLPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~~g-~~~~--~~l~ell~~aDiVvl~lp~~~~t~  107 (240)
                      .+|.|+++.|||.|.+|...++.|...|++|+++++..... ......+ +...  .-.++.+..+|+|+.++...+.+.
T Consensus         6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~elN~   85 (202)
T PRK06718          6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRVNE   85 (202)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHHHH
Confidence            46899999999999999999999999999999998754221 1111112 2211  111345788999988887443333


Q ss_pred             hcccHHHHccCCCCCEEEEcC
Q 026360          108 GMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~s  128 (240)
                      .+ .    ...+.+ .++|++
T Consensus        86 ~i-~----~~a~~~-~lvn~~  100 (202)
T PRK06718         86 QV-K----EDLPEN-ALFNVI  100 (202)
T ss_pred             HH-H----HHHHhC-CcEEEC
Confidence            22 2    222333 477774

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.73  E-value=0.00017  Score=63.77  Aligned_cols=80  Identities=23%  Similarity=0.304  Sum_probs=63.8

Q ss_pred             ccccCCCeEEEEccC-hHHHHHHHHhccC----CCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChh
Q 026360           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPF----NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK  105 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~----G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~  105 (240)
                      +.++.||++.|||-+ .+|+.+|..|...    ++.|+.+....              .++++..++||+|++++.    
T Consensus       152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~~l~~~~~~ADIvIsAvG----  213 (297)
T PRK14167        152 GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT--------------DDLAAKTRRADIVVAAAG----  213 (297)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccC----
Confidence            457999999999965 6899999999865    78898876421              367888999999999886    


Q ss_pred             hhhcccHHHHccCCCCCEEEEcCCCc
Q 026360          106 TRGMFDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailIN~srg~  131 (240)
                      -.+++..+.   +|+|+++||+|-..
T Consensus       214 kp~~i~~~~---ik~gaiVIDvGin~  236 (297)
T PRK14167        214 VPELIDGSM---LSEGATVIDVGINR  236 (297)
T ss_pred             CcCccCHHH---cCCCCEEEEccccc
Confidence            235777655   58999999999544

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=97.73  E-value=0.00013  Score=55.87  Aligned_cols=89  Identities=18%  Similarity=0.193  Sum_probs=54.0

Q ss_pred             eEEEEc-cChHHHHHHHHhccC-CCEEEEE-cCCCCChhHHH-hcC-ce-e-cCCH--Hhh-cCcCCEEEEcCCCChhhh
Q 026360           38 TVGTVG-CGRIGKLLLQRLKPF-NCNLLYH-DRVKMDPQLEK-ETG-AK-F-EEDL--DTM-LPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        38 ~vgIIG-~G~iG~~~A~~l~~~-G~~V~~~-d~~~~~~~~~~-~~g-~~-~-~~~l--~el-l~~aDiVvl~lp~~~~t~  107 (240)
                      ++||+| .|.+|+.++..+... ++++.++ ++......... ..+ .. . ..+.  +++ ..++|+|++|+|......
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~   80 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE   80 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence            589999 599999999998874 7887666 43321111111 111 10 0 0111  111 248999999999653332


Q ss_pred             hcccHHHHccCCCCCEEEEcC
Q 026360          108 GMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~s  128 (240)
                       .+. .....+++|.++|+++
T Consensus        81 -~~~-~~~~~~~~g~~viD~s   99 (122)
T smart00859       81 -IAP-LLPKAAEAGVKVIDLS   99 (122)
T ss_pred             -HHH-HHHhhhcCCCEEEECC
Confidence             221 2345579999999998

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=97.72  E-value=0.00018  Score=62.51  Aligned_cols=65  Identities=23%  Similarity=0.378  Sum_probs=48.2

Q ss_pred             CeEEEEcc-ChHHHHHHHHhcc-CCCEEE-EEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCC
Q 026360           37 KTVGTVGC-GRIGKLLLQRLKP-FNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        37 ~~vgIIG~-G~iG~~~A~~l~~-~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp  101 (240)
                      .+|+|+|+ |.||+.+++.+.. -++++. ++|+.+.........++....+++++++.+|+|+.++|
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~   69 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT   69 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC
Confidence            58999998 9999999998875 478865 47765433222233455556789999989999997776

>PLN02477 glutamate dehydrogenase

Probab=97.70  E-value=0.00044  Score=63.91  Aligned_cols=110  Identities=18%  Similarity=0.295  Sum_probs=73.7

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCCEEEEE-cCC-------CCChhHHHh----c-------CceecCCHHhhcC
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH-DRV-------KMDPQLEKE----T-------GAKFEEDLDTMLP   91 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~-d~~-------~~~~~~~~~----~-------g~~~~~~l~ell~   91 (240)
                      +.+++|++|+|.|+|++|+.+|+.|...|++|+++ |.+       ..+.+...+    .       +.+..++-+-+..
T Consensus       201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~  280 (410)
T PLN02477        201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVE  280 (410)
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceec
Confidence            34789999999999999999999999999998844 443       112221111    0       1222322222345


Q ss_pred             cCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus        92 ~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      +||+++-|.     ..+.|+.+...+++ =.+|+-.+.+++ +.+ --+.|+++.|.
T Consensus       281 ~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~e-a~~~L~~rGI~  329 (410)
T PLN02477        281 PCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DPE-ADEILRKKGVV  329 (410)
T ss_pred             cccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CHH-HHHHHHHCCcE
Confidence            799988876     36778888888775 356677777776 444 45888887776

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=97.70  E-value=0.0001  Score=63.99  Aligned_cols=117  Identities=15%  Similarity=0.156  Sum_probs=73.5

Q ss_pred             EEEEcc-ChHHHHHHHHhccCC----CEEEEEcCCCCChhHHH--------h---cCceecCCHHhhcCcCCEEEEcCCC
Q 026360           39 VGTVGC-GRIGKLLLQRLKPFN----CNLLYHDRVKMDPQLEK--------E---TGAKFEEDLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        39 vgIIG~-G~iG~~~A~~l~~~G----~~V~~~d~~~~~~~~~~--------~---~g~~~~~~l~ell~~aDiVvl~lp~  102 (240)
                      |+|||. |.+|..+|..+...|    .+|..+|.++...+...        .   ..+...+++++.+++||+|+++.-.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~   80 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV   80 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence            589999 999999999988777    68999998653322111        0   1223345667889999999996522


Q ss_pred             C--h---------hhhhccc--HHHHccCCCCCEEEEcCCCcccCHHHHHHH--HHhCCccEEE-eeCC
Q 026360          103 T--E---------KTRGMFD--KDRIAKMKKGVLIVNNARGAIMDTQAVVDA--CSSGHIAGYS-GDVW  155 (240)
Q Consensus       103 ~--~---------~t~~~i~--~~~l~~mk~gailIN~srg~~vd~~aL~~a--L~~g~i~ga~-lDV~  155 (240)
                      .  +         .+..++.  .+.+....|+++++|++..-=+-...+.+.  +...++.|.+ +|..
T Consensus        81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~ld~~  149 (263)
T cd00650          81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGTLDPI  149 (263)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeecchHH
Confidence            1  0         1111111  123344558999999963322333344444  4567888888 7753

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.70  E-value=8.2e-05  Score=66.45  Aligned_cols=91  Identities=21%  Similarity=0.271  Sum_probs=55.4

Q ss_pred             CCeEEEEccChHHHHHHHHhcc-CCC-EEEEEcCCCCChhHHH----hcC--ceecCCHHhhcCcCCEEEEcCCCChhhh
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQLEK----ETG--AKFEEDLDTMLPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~-~G~-~V~~~d~~~~~~~~~~----~~g--~~~~~~l~ell~~aDiVvl~lp~~~~t~  107 (240)
                      -++++|||.|..|+..++.+.. ++. +|.+|+|++...+.+.    ..+  +..+++.++++++||+|+.++|.+..+ 
T Consensus       128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-  206 (313)
T PF02423_consen  128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-  206 (313)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-
Confidence            4699999999999999988764 554 5999999864333221    123  345679999999999999999855422 


Q ss_pred             hcccHHHHccCCCCCEEEEcCCC
Q 026360          108 GMFDKDRIAKMKKGVLIVNNARG  130 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~srg  130 (240)
                      .++..+   .++||+.++.+|..
T Consensus       207 P~~~~~---~l~~g~hi~~iGs~  226 (313)
T PF02423_consen  207 PVFDAE---WLKPGTHINAIGSY  226 (313)
T ss_dssp             ESB-GG---GS-TT-EEEE-S-S
T ss_pred             ccccHH---HcCCCcEEEEecCC
Confidence            566654   47899999999854

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=97.66  E-value=0.00049  Score=55.41  Aligned_cols=94  Identities=17%  Similarity=0.335  Sum_probs=68.5

Q ss_pred             CCCeEEEEc--cChHHHHHHHHhccCCCEEEEEcCCCC--Ch--hHH-------HhcC--ceecCCHHhhcCcCCEEEEc
Q 026360           35 EGKTVGTVG--CGRIGKLLLQRLKPFNCNLLYHDRVKM--DP--QLE-------KETG--AKFEEDLDTMLPKCDIVVVN   99 (240)
Q Consensus        35 ~g~~vgIIG--~G~iG~~~A~~l~~~G~~V~~~d~~~~--~~--~~~-------~~~g--~~~~~~l~ell~~aDiVvl~   99 (240)
                      .|++|++||  .+++.++++..+..+|+++.++.|...  +.  +..       ...|  +...+++++.++++|+|...
T Consensus         1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~   80 (158)
T PF00185_consen    1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD   80 (158)
T ss_dssp             TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred             CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence            489999999  489999999999999999999988652  22  111       1223  35568999999999999887


Q ss_pred             CCC----Chh-------hhhcccHHHHccCCCCCEEEEcC
Q 026360          100 TPL----TEK-------TRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       100 lp~----~~~-------t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      .-.    .+.       ....++.+.++.+|++++|..+.
T Consensus        81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L  120 (158)
T PF00185_consen   81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL  120 (158)
T ss_dssp             SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred             CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence            643    111       12456888999999999988875

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=97.66  E-value=0.00052  Score=52.42  Aligned_cols=100  Identities=20%  Similarity=0.307  Sum_probs=67.0

Q ss_pred             CeEEEEc----cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccH
Q 026360           37 KTVGTVG----CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (240)
Q Consensus        37 ~~vgIIG----~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~  112 (240)
                      |+|+|||    -+..|..+.+.|++.|++|+.+++.....     .|...+.+++|.-...|++++++|. +.+..++. 
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----~G~~~y~sl~e~p~~iDlavv~~~~-~~~~~~v~-   73 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----LGIKCYPSLAEIPEPIDLAVVCVPP-DKVPEIVD-   73 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----TTEE-BSSGGGCSST-SEEEE-S-H-HHHHHHHH-
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----CcEEeeccccCCCCCCCEEEEEcCH-HHHHHHHH-
Confidence            6899999    68999999999999999999999865221     3666677898855889999999982 22333332 


Q ss_pred             HHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360          113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       113 ~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      + +..+..+.+++..+    -.++++.+.+++..+.
T Consensus        74 ~-~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~  104 (116)
T PF13380_consen   74 E-AAALGVKAVWLQPG----AESEELIEAAREAGIR  104 (116)
T ss_dssp             H-HHHHT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred             H-HHHcCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence            2 33346778888887    6778888888887776

>PRK09414 glutamate dehydrogenase; Provisional

Probab=97.65  E-value=0.00039  Score=64.79  Aligned_cols=110  Identities=16%  Similarity=0.297  Sum_probs=72.2

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCCEEEEE-cCC-------CCChhHHHh---------------cCceecCCHH
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH-DRV-------KMDPQLEKE---------------TGAKFEEDLD   87 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~-d~~-------~~~~~~~~~---------------~g~~~~~~l~   87 (240)
                      +.++.|++|+|.|+|++|+.+|+.|..+|++|+++ |.+       ..+.+...+               .+.... +.+
T Consensus       227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i-~~~  305 (445)
T PRK09414        227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYL-EGG  305 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeec-CCc
Confidence            34689999999999999999999999999999887 522       111111100               022222 334


Q ss_pred             hhcC-cCCEEEEcCCCChhhhhcccHHHHccCC-CC-CEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360           88 TMLP-KCDIVVVNTPLTEKTRGMFDKDRIAKMK-KG-VLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus        88 ell~-~aDiVvl~lp~~~~t~~~i~~~~l~~mk-~g-ailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      +++. +||+++-|..     .+.|+.+....++ ++ .+|+-.+.+++ +.+ -.+.|.++.|.
T Consensus       306 ~i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~-t~~-A~~~L~~rGI~  362 (445)
T PRK09414        306 SPWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS-TPE-AIEVFLEAGVL  362 (445)
T ss_pred             cccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC-CHH-HHHHHHHCCcE
Confidence            4443 6999998886     5667777666663 23 45666666766 444 55777777766

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.64  E-value=0.00039  Score=63.32  Aligned_cols=137  Identities=17%  Similarity=0.194  Sum_probs=92.4

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHH----------------Hh-c--C-ceecCCHHhhcCcCCEE
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE----------------KE-T--G-AKFEEDLDTMLPKCDIV   96 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~----------------~~-~--g-~~~~~~l~ell~~aDiV   96 (240)
                      ++|.|+|.|-+|-..+..+..+|++|+++|..+.+.+..                ++ .  | ....++.++.++++|++
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~   80 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV   80 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence            589999999999999999999999999999875332211                11 1  1 34556888999999999


Q ss_pred             EEcCCCChhhhhcc--------cHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeC-CCCCCCCCCCCC-
Q 026360           97 VVNTPLTEKTRGMF--------DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV-WNPQPAPKDHPW-  166 (240)
Q Consensus        97 vl~lp~~~~t~~~i--------~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV-~~~EP~~~~~~l-  166 (240)
                      ++++|-.+...+-+        -++..+.++..+++|+=|+-.+=..+.+.+-+.+..-.. -.+| +.+|-+.+.+-+ 
T Consensus        81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLREG~Av~  159 (414)
T COG1004          81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLREGSAVY  159 (414)
T ss_pred             EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcCcchhh
Confidence            99998433222222        245566677779999999988888888877766554322 2222 455555544433 


Q ss_pred             --CCCCCeEE
Q 026360          167 --RYMPNQAM  174 (240)
Q Consensus       167 --~~~~nv~~  174 (240)
                        +..+++++
T Consensus       160 D~~~PdRIVi  169 (414)
T COG1004         160 DFLYPDRIVI  169 (414)
T ss_pred             hccCCCeEEE
Confidence              33344554

>PRK07589 ornithine cyclodeaminase; Validated

Probab=97.64  E-value=0.00018  Score=65.05  Aligned_cols=90  Identities=13%  Similarity=0.145  Sum_probs=64.0

Q ss_pred             CCeEEEEccChHHHHHHHHhcc-CCC-EEEEEcCCCCChhHHH----hcC--ceecCCHHhhcCcCCEEEEcCCCChhhh
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQLEK----ETG--AKFEEDLDTMLPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~-~G~-~V~~~d~~~~~~~~~~----~~g--~~~~~~l~ell~~aDiVvl~lp~~~~t~  107 (240)
                      -++++|||.|..|...++.+.. +.. +|.+|+|++...+.+.    ..+  +..+++.++++++||+|+.++|.+ +..
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~-~~~  207 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK-TNA  207 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC-CCC
Confidence            5789999999999988776553 344 5999999865433222    123  445679999999999999999743 222


Q ss_pred             hcccHHHHccCCCCCEEEEcCC
Q 026360          108 GMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~sr  129 (240)
                      .++..+.   +|||+.+.-+|.
T Consensus       208 Pvl~~~~---lkpG~hV~aIGs  226 (346)
T PRK07589        208 TILTDDM---VEPGMHINAVGG  226 (346)
T ss_pred             ceecHHH---cCCCcEEEecCC
Confidence            4565543   599998887764

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.63  E-value=0.00014  Score=61.02  Aligned_cols=92  Identities=20%  Similarity=0.111  Sum_probs=61.3

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCCh-hHHHhc-Cceec--CCHHhhcCcCCEEEEcCCCChhhh
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLEKET-GAKFE--EDLDTMLPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~~-g~~~~--~~l~ell~~aDiVvl~lp~~~~t~  107 (240)
                      .++.|+++.|||.|.+|..-++.|...|++|+++++...+. ...... .+...  .--.+.+..+|+|+.++...+-  
T Consensus         5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~l--   82 (205)
T TIGR01470         5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEEL--   82 (205)
T ss_pred             EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHHH--
Confidence            36899999999999999999999999999999999865321 111122 23221  1113457889998887653222  


Q ss_pred             hcccHHHHccCCCCCEEEEcC
Q 026360          108 GMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~s  128 (240)
                         +.......+...++||+.
T Consensus        83 ---n~~i~~~a~~~~ilvn~~  100 (205)
T TIGR01470        83 ---NRRVAHAARARGVPVNVV  100 (205)
T ss_pred             ---HHHHHHHHHHcCCEEEEC
Confidence               334444455556788864

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=97.63  E-value=0.00023  Score=63.20  Aligned_cols=88  Identities=11%  Similarity=0.138  Sum_probs=65.0

Q ss_pred             CCCeEEEEccChHHHHHHHHhcc-CCC-EEEEEcCCCCChhHH-Hh----cC--ceecCCHHhhcCcCCEEEEcCCCChh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQLE-KE----TG--AKFEEDLDTMLPKCDIVVVNTPLTEK  105 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~-~G~-~V~~~d~~~~~~~~~-~~----~g--~~~~~~l~ell~~aDiVvl~lp~~~~  105 (240)
                      .-+++||||.|..|+..++.+.. +.. +|.+|+|++.+.+.+ +.    .|  +..+++.++++++||+|+.++|.+  
T Consensus       116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~--  193 (301)
T PRK06407        116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSD--  193 (301)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC--
Confidence            46899999999999998887764 344 599999986544322 11    24  345678999999999999999844  


Q ss_pred             hhhcccHHHHccCCCCCEEEEcC
Q 026360          106 TRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailIN~s  128 (240)
                       ..++..+.   +|||+.+.-+|
T Consensus       194 -~P~~~~~~---l~pg~hV~aiG  212 (301)
T PRK06407        194 -TPIFNRKY---LGDEYHVNLAG  212 (301)
T ss_pred             -CcEecHHH---cCCCceEEecC
Confidence             46666654   57887776665

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=97.62  E-value=0.00023  Score=63.97  Aligned_cols=88  Identities=22%  Similarity=0.279  Sum_probs=68.6

Q ss_pred             CCeEEEEccChHHHHHHHHhcc-CCC-EEEEEcCCCCChhHHH----h-cC--ceecCCHHhhcCcCCEEEEcCCCChhh
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQLEK----E-TG--AKFEEDLDTMLPKCDIVVVNTPLTEKT  106 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~-~G~-~V~~~d~~~~~~~~~~----~-~g--~~~~~~l~ell~~aDiVvl~lp~~~~t  106 (240)
                      -+++||||.|..++..++.++. ++. +|.+|+|++...+.+.    . .+  +..+++.+++++.||+|+.++|.++  
T Consensus       130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~--  207 (330)
T COG2423         130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE--  207 (330)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC--
Confidence            5689999999999999998875 455 5999999875544332    2 23  3567899999999999999999654  


Q ss_pred             hhcccHHHHccCCCCCEEEEcCC
Q 026360          107 RGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       107 ~~~i~~~~l~~mk~gailIN~sr  129 (240)
                       .++..+.   ++||+.|..+|.
T Consensus       208 -Pil~~~~---l~~G~hI~aiGa  226 (330)
T COG2423         208 -PVLKAEW---LKPGTHINAIGA  226 (330)
T ss_pred             -CeecHhh---cCCCcEEEecCC
Confidence             6666655   579999999884

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=97.61  E-value=0.0002  Score=53.70  Aligned_cols=80  Identities=24%  Similarity=0.251  Sum_probs=56.6

Q ss_pred             hHHHHHHHHhccCCCEEEEEcCCCCChhHHHh----cCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCC
Q 026360           46 RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE----TGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG  121 (240)
Q Consensus        46 ~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~----~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~g  121 (240)
                      .-+..+++.|+..|++|.+|||.- .......    .+++..+++++.++.+|+|+++++- ++.+.+--.+....|+++
T Consensus        17 Sp~~~l~~~L~~~g~~V~~~DP~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h-~~f~~l~~~~~~~~~~~~   94 (106)
T PF03720_consen   17 SPALELIEELKERGAEVSVYDPYV-DEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDH-DEFRELDWEEIAKLMRKP   94 (106)
T ss_dssp             -HHHHHHHHHHHTT-EEEEE-TTS-HHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS---GGGGCCGHHHHHHHSCSS
T ss_pred             CHHHHHHHHHHHCCCEEEEECCcc-ChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecC-HHHhccCHHHHHHhcCCC
Confidence            456788999999999999999964 2333333    4677778999999999999999984 333443334566778889


Q ss_pred             CEEEEc
Q 026360          122 VLIVNN  127 (240)
Q Consensus       122 ailIN~  127 (240)
                      .+||++
T Consensus        95 ~~iiD~  100 (106)
T PF03720_consen   95 PVIIDG  100 (106)
T ss_dssp             EEEEES
T ss_pred             CEEEEC
Confidence            999987

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=97.57  E-value=0.00099  Score=62.08  Aligned_cols=111  Identities=20%  Similarity=0.274  Sum_probs=72.9

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCCEEE-EEcCC-------CCChhHH--------------Hh-----cCceec
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRV-------KMDPQLE--------------KE-----TGAKFE   83 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~-~~d~~-------~~~~~~~--------------~~-----~g~~~~   83 (240)
                      +.+|+|+||.|-|+|++|...|+.|...|++|+ +.|.+       ..+.+..              ..     .+++..
T Consensus       232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~  311 (454)
T PTZ00079        232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV  311 (454)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe
Confidence            456899999999999999999999999999988 44443       1111111              00     023333


Q ss_pred             CCHHhhc-CcCCEEEEcCCCChhhhhcccHHHHccC-CCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360           84 EDLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKM-KKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus        84 ~~l~ell-~~aDiVvl~lp~~~~t~~~i~~~~l~~m-k~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                       +.++++ -.||+.+-|.     +.+.|+.+..+.+ +.++.+|--+.......+ -.+.|++..|.
T Consensus       312 -~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~e-A~~~L~~~GI~  371 (454)
T PTZ00079        312 -PGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPTTIE-ATHLFKKNGVI  371 (454)
T ss_pred             -CCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCCCHH-HHHHHHHCCcE
Confidence             222333 4689888776     5678887776655 556666666655556664 44667776665

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=97.55  E-value=0.00063  Score=62.28  Aligned_cols=108  Identities=21%  Similarity=0.395  Sum_probs=74.5

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCC------------------Ch-hHHHhcCceecCCHHhhc-C
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM------------------DP-QLEKETGAKFEEDLDTML-P   91 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~------------------~~-~~~~~~g~~~~~~l~ell-~   91 (240)
                      .+|+|+||.|-|+|++|+.+|+.|...|.+|+++|-+..                  .. ......+.+..++ ++++ .
T Consensus       203 ~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~-~e~~~~  281 (411)
T COG0334         203 DDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITN-EELLEV  281 (411)
T ss_pred             CCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccc-cccccc
Confidence            358999999999999999999999999999998876543                  11 1112234555544 4444 4


Q ss_pred             cCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCc
Q 026360           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI  147 (240)
Q Consensus        92 ~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i  147 (240)
                      +||+.+-|.     +.+.|+.+...+++-. +++-.+.|++ +.++--..++.|-+
T Consensus       282 ~cDIl~PcA-----~~n~I~~~na~~l~ak-~V~EgAN~P~-t~eA~~i~~erGIl  330 (411)
T COG0334         282 DCDILIPCA-----LENVITEDNADQLKAK-IVVEGANGPT-TPEADEILLERGIL  330 (411)
T ss_pred             cCcEEcccc-----cccccchhhHHHhhhc-EEEeccCCCC-CHHHHHHHHHCCCE
Confidence            699887665     5788888888888866 6666666654 44444444444433

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.54  E-value=0.00075  Score=63.23  Aligned_cols=113  Identities=19%  Similarity=0.217  Sum_probs=73.4

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCCh-----hHHHhcCceec--CCHHhhcCcCCEEEEcCCCChhh
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-----QLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKT  106 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~-----~~~~~~g~~~~--~~l~ell~~aDiVvl~lp~~~~t  106 (240)
                      +.+++|+|+|+|..|.++|+.|+..|++|.++|..+...     ......|+...  ....+.+.++|+|+.. |.-+.+
T Consensus        12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~~   90 (458)
T PRK01710         12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRID   90 (458)
T ss_pred             hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCCC
Confidence            678999999999999999999999999999999754211     12344566442  2224556789998887 432211


Q ss_pred             h-----------hcccH-HHHcc-CCCCCEEEEcCCCcccCHHHHHHHHHhCCc
Q 026360          107 R-----------GMFDK-DRIAK-MKKGVLIVNNARGAIMDTQAVVDACSSGHI  147 (240)
Q Consensus       107 ~-----------~~i~~-~~l~~-mk~gailIN~srg~~vd~~aL~~aL~~g~i  147 (240)
                      .           .++++ +.+.+ .+...+-|.-+.|+.-...-+...|+....
T Consensus        91 ~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~  144 (458)
T PRK01710         91 SPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGY  144 (458)
T ss_pred             chHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence            1           11221 22222 233356666667888888888888875443

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.48  E-value=0.0002  Score=61.04  Aligned_cols=69  Identities=20%  Similarity=0.238  Sum_probs=50.6

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh--cCceec-------CCHHhh-cCcCCEEEEcCCCChh
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--TGAKFE-------EDLDTM-LPKCDIVVVNTPLTEK  105 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~--~g~~~~-------~~l~el-l~~aDiVvl~lp~~~~  105 (240)
                      |++.|+|+|.+|..+|+.|...|++|+.+|+++........  .+...+       ..|+++ +.++|+++.++..++.
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~   79 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEV   79 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHH
Confidence            57999999999999999999999999999987654444222  333211       233444 6789999999885543

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.46  E-value=0.0004  Score=64.27  Aligned_cols=110  Identities=13%  Similarity=0.097  Sum_probs=67.3

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhh--------
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR--------  107 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~--------  107 (240)
                      .++|.|||+|.+|.++|+.|+..|++|+++|++..........+-......+...+++|+++.+.+..+...        
T Consensus         3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~   82 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIAS   82 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHC
Confidence            478999999999999999999999999999976532211110100111233445578998888765432110        


Q ss_pred             --hcccH-HH-Hcc--C-CCCCEEEEcCCCcccCHHHHHHHHHhC
Q 026360          108 --GMFDK-DR-IAK--M-KKGVLIVNNARGAIMDTQAVVDACSSG  145 (240)
Q Consensus       108 --~~i~~-~~-l~~--m-k~gailIN~srg~~vd~~aL~~aL~~g  145 (240)
                        .++.. +. +..  + ....+=|--+.|+.=...-+...|+..
T Consensus        83 g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~  127 (418)
T PRK00683         83 HIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRL  127 (418)
T ss_pred             CCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHc
Confidence              12332 21 121  1 222455666668877777788888753

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=97.45  E-value=0.00045  Score=53.31  Aligned_cols=103  Identities=21%  Similarity=0.259  Sum_probs=60.7

Q ss_pred             CeEEEEcc-ChHHHHHHHHhcc-CCCEE-EEEcCCCCCh---hH-----HHhcCceecCCHHhhcCcCCEEEEcCCCChh
Q 026360           37 KTVGTVGC-GRIGKLLLQRLKP-FNCNL-LYHDRVKMDP---QL-----EKETGAKFEEDLDTMLPKCDIVVVNTPLTEK  105 (240)
Q Consensus        37 ~~vgIIG~-G~iG~~~A~~l~~-~G~~V-~~~d~~~~~~---~~-----~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~  105 (240)
                      .+|+|+|+ |+||+.+++.+.. -|+++ -++++.+.+.   +.     ....++...++++++++.+|+++-..  +|+
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT--~p~   78 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT--NPD   78 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES---HH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC--ChH
Confidence            37999999 9999999999987 68885 4567654110   10     01345666789999999999998776  233


Q ss_pred             hhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360          106 TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~  144 (240)
                      .-.-.-+..   ++.+.-+|-..+|---.+.+.++.+.+
T Consensus        79 ~~~~~~~~~---~~~g~~~ViGTTG~~~~~~~~l~~~a~  114 (124)
T PF01113_consen   79 AVYDNLEYA---LKHGVPLVIGTTGFSDEQIDELEELAK  114 (124)
T ss_dssp             HHHHHHHHH---HHHT-EEEEE-SSSHHHHHHHHHHHTT
T ss_pred             HhHHHHHHH---HhCCCCEEEECCCCCHHHHHHHHHHhc
Confidence            222111222   334666776667764444444444443

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=97.45  E-value=0.00073  Score=60.06  Aligned_cols=91  Identities=18%  Similarity=0.179  Sum_probs=58.7

Q ss_pred             CeEEEEccChHHHHHHHHhccCC--CEEEEEcCCCCChhH-HHhc-------C--ce-ecCCHHhhcCcCCEEEEcCCCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQL-EKET-------G--AK-FEEDLDTMLPKCDIVVVNTPLT  103 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G--~~V~~~d~~~~~~~~-~~~~-------g--~~-~~~~l~ell~~aDiVvl~lp~~  103 (240)
                      ++|+|||.|.+|..+|..|...|  .+|.++|++....+. +.++       +  .. ...+.+ .+++||+|+++....
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~-~l~~aDIVIitag~~   79 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYS-DCKDADIVVITAGAP   79 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHH-HhCCCCEEEEccCCC
Confidence            48999999999999999998888  479999987543221 1111       1  11 123444 478999999998642


Q ss_pred             hh---h--------hhccc--HHHHccCCCCCEEEEcC
Q 026360          104 EK---T--------RGMFD--KDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       104 ~~---t--------~~~i~--~~~l~~mk~gailIN~s  128 (240)
                      ..   +        ..++.  .+.+....|.+++++++
T Consensus        80 ~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs  117 (306)
T cd05291          80 QKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS  117 (306)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence            11   1        11111  12344456788999987

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.44  E-value=0.00073  Score=59.63  Aligned_cols=70  Identities=16%  Similarity=0.205  Sum_probs=48.4

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCCC---Ch-hHHHhc---C----ceec--C---CHHhhcCcCCE
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKM---DP-QLEKET---G----AKFE--E---DLDTMLPKCDI   95 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~~---~~-~~~~~~---g----~~~~--~---~l~ell~~aDi   95 (240)
                      ++.++++.|+|.|.+|++++..|...|++ |++++|+..   +. +..+++   +    +...  +   ++++.++.+|+
T Consensus       123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Di  202 (289)
T PRK12548        123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDI  202 (289)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCE
Confidence            46799999999999999999999999996 999998752   11 111111   1    1111  1   22345567899


Q ss_pred             EEEcCCC
Q 026360           96 VVVNTPL  102 (240)
Q Consensus        96 Vvl~lp~  102 (240)
                      ||.++|.
T Consensus       203 lINaTp~  209 (289)
T PRK12548        203 LVNATLV  209 (289)
T ss_pred             EEEeCCC
Confidence            9888884

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.43  E-value=0.00036  Score=61.43  Aligned_cols=71  Identities=11%  Similarity=0.052  Sum_probs=51.4

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHH-HhcC----ceec---CCHHhhcCcCCEEEEcCCCC
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLE-KETG----AKFE---EDLDTMLPKCDIVVVNTPLT  103 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~-~~~g----~~~~---~~l~ell~~aDiVvl~lp~~  103 (240)
                      .+.|+++.|||.|.+|++++..|...|+ +|++++|+..+.+.. ...+    +...   +++.+.+.++|+||.++|..
T Consensus       122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g  201 (282)
T TIGR01809       122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD  201 (282)
T ss_pred             ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence            4679999999999999999999999997 599999975433322 2221    1112   12335567899999999854

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=97.40  E-value=0.00081  Score=59.73  Aligned_cols=112  Identities=12%  Similarity=0.065  Sum_probs=72.4

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-cCceec-----------CCHHhhcCcCCEEEEcCCCCh
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAKFE-----------EDLDTMLPKCDIVVVNTPLTE  104 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-~g~~~~-----------~~l~ell~~aDiVvl~lp~~~  104 (240)
                      ++|+|+|.|.||..+|-.|...|.+|.+++|.....+...+ .|+...           ....+.....|+|++++... 
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~-   81 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY-   81 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-
Confidence            57999999999999999999999999999986422232222 122110           01112245789999998633 


Q ss_pred             hhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEE
Q 026360          105 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS  151 (240)
Q Consensus       105 ~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~  151 (240)
                      ++...+ +.....+.+++.+|-.- .++-.++.+.+.+.+.++.++.
T Consensus        82 ~~~~al-~~l~~~l~~~t~vv~lQ-NGv~~~e~l~~~~~~~~v~~g~  126 (305)
T PRK05708         82 DAEPAV-ASLAHRLAPGAELLLLQ-NGLGSQDAVAARVPHARCIFAS  126 (305)
T ss_pred             hHHHHH-HHHHhhCCCCCEEEEEe-CCCCCHHHHHHhCCCCcEEEEE
Confidence            233322 34555677888777664 4455667777787666666543

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.39  E-value=0.00063  Score=54.75  Aligned_cols=70  Identities=16%  Similarity=0.168  Sum_probs=49.8

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcC-ceec-CCH-HhhcCcCCEEEEcCCCC
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG-AKFE-EDL-DTMLPKCDIVVVNTPLT  103 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g-~~~~-~~l-~ell~~aDiVvl~lp~~  103 (240)
                      .+|+|++|.|||.|.+|...++.|...|++|+++++.. . +...+++ +... ..+ ++-++++|+|+.++...
T Consensus         9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~-~-~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~   81 (157)
T PRK06719          9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEI-C-KEMKELPYITWKQKTFSNDDIKDAHLIYAATNQH   81 (157)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCcc-C-HHHHhccCcEEEecccChhcCCCceEEEECCCCH
Confidence            47999999999999999999999999999999997643 2 2222232 1111 111 23467899998887643

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=97.39  E-value=6.4e-05  Score=63.58  Aligned_cols=121  Identities=16%  Similarity=0.146  Sum_probs=78.0

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-----------cC------------------ceecC
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------TG------------------AKFEE   84 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-----------~g------------------~~~~~   84 (240)
                      ..=+.|+|||.|.||..+|+.....|+.|..+|.+......+.+           .+                  ++..+
T Consensus         9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t   88 (298)
T KOG2304|consen    9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST   88 (298)
T ss_pred             ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence            34568999999999999999999999999999987643222211           00                  11234


Q ss_pred             CHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEE-EcCCCcccCHHHHHHHHHhCCccEEEeeCCCCC
Q 026360           85 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ  158 (240)
Q Consensus        85 ~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailI-N~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~E  158 (240)
                      +..+++.++|+|+=+.--+.+.+.-+.++.=...|+.+++. |+|   -+...++..+++... ..++|--|.+-
T Consensus        89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTS---Sl~lt~ia~~~~~~s-rf~GlHFfNPv  159 (298)
T KOG2304|consen   89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTS---SLSLTDIASATQRPS-RFAGLHFFNPV  159 (298)
T ss_pred             CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeeccc---ceeHHHHHhhccChh-hhceeeccCCc
Confidence            66677778888776665444444444444445567777664 443   345566777776544 34688766543

>TIGR00670 asp_carb_tr aspartate carbamoyltransferase

Probab=97.36  E-value=0.0021  Score=57.10  Aligned_cols=96  Identities=24%  Similarity=0.357  Sum_probs=67.4

Q ss_pred             ccCCCeEEEEcc---ChHHHHHHHHhccCCCEEEEEcCCCC-Ch-h---HHHhcCc--eecCCHHhhcCcCCEEEEcCCC
Q 026360           33 DLEGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVKM-DP-Q---LEKETGA--KFEEDLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        33 ~l~g~~vgIIG~---G~iG~~~A~~l~~~G~~V~~~d~~~~-~~-~---~~~~~g~--~~~~~l~ell~~aDiVvl~lp~  102 (240)
                      .+.|++|+++|-   +++.++++..+..+|++|.+..|... .+ +   .+.+.|.  ...+++++.++++|+|....-.
T Consensus       147 ~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~~~  226 (301)
T TIGR00670       147 RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTRIQ  226 (301)
T ss_pred             CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECCcc
Confidence            489999999997   59999999999999999999987643 22 2   2223454  3467999999999999874311


Q ss_pred             C------hhh-----hhcccHHHHccCCCCCEEEEcC
Q 026360          103 T------EKT-----RGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       103 ~------~~t-----~~~i~~~~l~~mk~gailIN~s  128 (240)
                      .      ++.     ..-++.+.++.+++++++..+.
T Consensus       227 ~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHcl  263 (301)
T TIGR00670       227 KERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPL  263 (301)
T ss_pred             ccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCC
Confidence            0      010     1234666777777777776554

Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=97.35  E-value=0.00075  Score=60.51  Aligned_cols=117  Identities=17%  Similarity=0.303  Sum_probs=69.8

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChh-----HHHh---cC----ceecCCHHhhcCcCCEEEEcC
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-----LEKE---TG----AKFEEDLDTMLPKCDIVVVNT  100 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~-----~~~~---~g----~~~~~~l~ell~~aDiVvl~l  100 (240)
                      +..+||+|||.|.+|..+|..+...|. +|..+|.++....     ....   .+    +....+.+ .+++||+|+++.
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~-~l~~aDiVI~ta   82 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYE-DIAGSDVVIVTA   82 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHH-HhCCCCEEEECC
Confidence            456899999999999999999887785 8999998764221     1111   11    22234664 679999999976


Q ss_pred             CCCh----------------hhhhccc--HHHHccCCCCCEEEEcCCCcccCHHHHHHHHH--hCCccEEE
Q 026360          101 PLTE----------------KTRGMFD--KDRIAKMKKGVLIVNNARGAIMDTQAVVDACS--SGHIAGYS  151 (240)
Q Consensus       101 p~~~----------------~t~~~i~--~~~l~~mk~gailIN~srg~~vd~~aL~~aL~--~g~i~ga~  151 (240)
                      -...                .+..++.  .+.+....|.+++++++...=+-...+.+...  ..++.|.+
T Consensus        83 g~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg  153 (321)
T PTZ00082         83 GLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA  153 (321)
T ss_pred             CCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence            3211                1111111  12233345778999998443333334443332  34566665

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=97.35  E-value=0.0013  Score=58.59  Aligned_cols=93  Identities=19%  Similarity=0.253  Sum_probs=64.9

Q ss_pred             ccCCCeEEEEcc---ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCC------
Q 026360           33 DLEGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLT------  103 (240)
Q Consensus        33 ~l~g~~vgIIG~---G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~------  103 (240)
                      .+.|++|+++|-   +++.++++..+..+|+++.+..|....++...  .....+++++.++++|+|....=..      
T Consensus       153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~--~~~~~~d~~ea~~~aDvvyt~~~q~e~~~~~  230 (305)
T PRK00856        153 RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMP--EYGVHTDLDEVIEDADVVMMLRVQKERMDGG  230 (305)
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCccccc--ceEEECCHHHHhCCCCEEEECCccccccccc
Confidence            489999999996   69999999999999999999987543222111  2355679999999999998754110      


Q ss_pred             --hhh-----hhcccHHHHccCCCCCEEEEc
Q 026360          104 --EKT-----RGMFDKDRIAKMKKGVLIVNN  127 (240)
Q Consensus       104 --~~t-----~~~i~~~~l~~mk~gailIN~  127 (240)
                        ++.     ...++++.++.+|+++++..+
T Consensus       231 ~~~~~~~~~~~y~v~~~ll~~a~~~~~~mHc  261 (305)
T PRK00856        231 LLPSYEEYKRSYGLTAERLALAKPDAIVMHP  261 (305)
T ss_pred             chHHHHHHhccCccCHHHHhhcCCCCEEECC
Confidence              010     123466666666666666554

>cd08230 glucose_DH Glucose dehydrogenase

Probab=97.34  E-value=0.00071  Score=60.82  Aligned_cols=89  Identities=13%  Similarity=0.244  Sum_probs=63.4

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCC---CCChhHHHhcCceecCC----HHh--hcCcCCEEEEcCCCChh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV---KMDPQLEKETGAKFEED----LDT--MLPKCDIVVVNTPLTEK  105 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~---~~~~~~~~~~g~~~~~~----l~e--ll~~aDiVvl~lp~~~~  105 (240)
                      .|.+|.|+|.|.+|...++.++..|++|++++++   +.+.+.++++|+..+..    ..+  .....|+|+-++.... 
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~-  250 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPP-  250 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHH-
Confidence            6899999999999999999999999999999873   33455566777654321    111  1234788888876211 


Q ss_pred             hhhcccHHHHccCCCCCEEEEcC
Q 026360          106 TRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailIN~s  128 (240)
                          ...+.++.++++..++.++
T Consensus       251 ----~~~~~~~~l~~~G~~v~~G  269 (355)
T cd08230         251 ----LAFEALPALAPNGVVILFG  269 (355)
T ss_pred             ----HHHHHHHHccCCcEEEEEe
Confidence                1235667788888888776

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.33  E-value=0.00042  Score=53.07  Aligned_cols=87  Identities=21%  Similarity=0.344  Sum_probs=51.2

Q ss_pred             eEEEEc-cChHHHHHHHHhccC-CCEE-EEEcCCC-CChhHHHhc----Cc---eecCCHHhhcCcCCEEEEcCCCChhh
Q 026360           38 TVGTVG-CGRIGKLLLQRLKPF-NCNL-LYHDRVK-MDPQLEKET----GA---KFEEDLDTMLPKCDIVVVNTPLTEKT  106 (240)
Q Consensus        38 ~vgIIG-~G~iG~~~A~~l~~~-G~~V-~~~d~~~-~~~~~~~~~----g~---~~~~~l~ell~~aDiVvl~lp~~~~t  106 (240)
                      ||+||| .|.+|+.+.+.|... .+++ .+++++. .-.......    +.   ...+...+.+.++|+|++|+|... .
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~-~   79 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGA-S   79 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHH-H
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhH-H
Confidence            699999 999999999999863 4564 4455544 111111111    11   111112234599999999999322 2


Q ss_pred             hhcccHHHHccCCCCCEEEEcCC
Q 026360          107 RGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       107 ~~~i~~~~l~~mk~gailIN~sr  129 (240)
                      ... ....   +++|..+|+.+.
T Consensus        80 ~~~-~~~~---~~~g~~ViD~s~   98 (121)
T PF01118_consen   80 KEL-APKL---LKAGIKVIDLSG   98 (121)
T ss_dssp             HHH-HHHH---HHTTSEEEESSS
T ss_pred             HHH-HHHH---hhCCcEEEeCCH
Confidence            222 2222   578889999873

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=97.32  E-value=0.0005  Score=62.06  Aligned_cols=63  Identities=22%  Similarity=0.371  Sum_probs=47.4

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcC-ce-ec---CCHHhhcCcCCEEEE
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG-AK-FE---EDLDTMLPKCDIVVV   98 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g-~~-~~---~~l~ell~~aDiVvl   98 (240)
                      +++|||||-|..|+.++...+.+|++|++.|+++..+...-... +. ..   ..+.++.+.||+|..
T Consensus         1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~   68 (375)
T COG0026           1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY   68 (375)
T ss_pred             CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence            47999999999999999999999999999998765433221111 11 11   246788999999976

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=97.32  E-value=0.00049  Score=64.00  Aligned_cols=65  Identities=14%  Similarity=0.065  Sum_probs=46.4

Q ss_pred             CeEEEEccChHHHHHHH---Hh---ccCCCEEEEEcCCCCChhHHH--------hc----CceecCCHHhhcCcCCEEEE
Q 026360           37 KTVGTVGCGRIGKLLLQ---RL---KPFNCNLLYHDRVKMDPQLEK--------ET----GAKFEEDLDTMLPKCDIVVV   98 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~---~l---~~~G~~V~~~d~~~~~~~~~~--------~~----g~~~~~~l~ell~~aDiVvl   98 (240)
                      .+|+|||.|.+|.+.+.   .+   ...|.+|..||+++...+...        ..    .+....++++.++.||+|+.
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~   80 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN   80 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence            47999999999998655   22   344779999998764322211        11    12345688899999999999


Q ss_pred             cCC
Q 026360           99 NTP  101 (240)
Q Consensus        99 ~lp  101 (240)
                      ++|
T Consensus        81 ai~   83 (423)
T cd05297          81 TIQ   83 (423)
T ss_pred             eeE
Confidence            998

linked to 3D####ucture

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.30  E-value=0.0015  Score=61.07  Aligned_cols=114  Identities=15%  Similarity=0.191  Sum_probs=72.4

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcC--CCC-h----h
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT--PLT-E----K  105 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~l--p~~-~----~  105 (240)
                      ++.|++|.|+|+|..|.++|+.|+..|++|.++|............|+.....-.+-+.++|+|+..-  |.+ +    .
T Consensus         6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~   85 (460)
T PRK01390          6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWV   85 (460)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHH
Confidence            36789999999999999999999999999999996533222233456543211123356799887642  211 1    1


Q ss_pred             h---hh----cccH-HHHcc-C-----CCCCEEEEcCCCcccCHHHHHHHHHhCC
Q 026360          106 T---RG----MFDK-DRIAK-M-----KKGVLIVNNARGAIMDTQAVVDACSSGH  146 (240)
Q Consensus       106 t---~~----~i~~-~~l~~-m-----k~gailIN~srg~~vd~~aL~~aL~~g~  146 (240)
                      .   +.    ++.+ +.+.. +     +...+-|.-+.|+.=...-|...|+...
T Consensus        86 v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g  140 (460)
T PRK01390         86 VDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAG  140 (460)
T ss_pred             HHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence            1   11    1322 22222 2     3345666677898888888888888633

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.30  E-value=0.00049  Score=63.93  Aligned_cols=69  Identities=17%  Similarity=0.188  Sum_probs=51.3

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-cCceec-------CCHHhh-cCcCCEEEEcCCCChh
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAKFE-------EDLDTM-LPKCDIVVVNTPLTEK  105 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-~g~~~~-------~~l~el-l~~aDiVvl~lp~~~~  105 (240)
                      +++.|+|+|.+|+.+++.|...|++|+++|+++...+...+ .++...       ..++++ +.++|.|+++++....
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~   78 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDET   78 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHH
Confidence            47999999999999999999999999999987654444433 443221       234444 7889999999985443

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=97.29  E-value=0.00085  Score=50.43  Aligned_cols=85  Identities=24%  Similarity=0.295  Sum_probs=57.1

Q ss_pred             EEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec----CCHHh----hcCcCCEEEEcCCCChhhhhcc
Q 026360           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLDT----MLPKCDIVVVNTPLTEKTRGMF  110 (240)
Q Consensus        39 vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~e----ll~~aDiVvl~lp~~~~t~~~i  110 (240)
                      |-|+|+|.+|+.+++.|+..+.+|++++.++...+.+.+.|+...    .+.+.    -++++|.++++.+....+  +.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n--~~   78 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEEN--LL   78 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHH--HH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHH--HH
Confidence            569999999999999999977799999987655566666665422    22222    257899999999855433  33


Q ss_pred             cHHHHccCCCCCEEE
Q 026360          111 DKDRIAKMKKGVLIV  125 (240)
Q Consensus       111 ~~~~l~~mk~gailI  125 (240)
                      -...++.+.+...++
T Consensus        79 ~~~~~r~~~~~~~ii   93 (116)
T PF02254_consen   79 IALLARELNPDIRII   93 (116)
T ss_dssp             HHHHHHHHTTTSEEE
T ss_pred             HHHHHHHHCCCCeEE
Confidence            334455555655554

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.28  E-value=0.00069  Score=64.07  Aligned_cols=112  Identities=18%  Similarity=0.220  Sum_probs=71.6

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecC--CHHhhcCcCCEEEEcCCCChh---h--
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE--DLDTMLPKCDIVVVNTPLTEK---T--  106 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~--~l~ell~~aDiVvl~lp~~~~---t--  106 (240)
                      +.|+++.|+|+|..|.+.++.|+..|++|+++|..+...+.+++.|+....  ...+.++++|+|+.+-.-.+.   .  
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~   89 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAA   89 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHH
Confidence            478999999999999999999999999999999654333334455765431  234556789988887422221   1  


Q ss_pred             -----hhcccHHHHc-cC-------CC-CCEEEEcCCCcccCHHHHHHHHHhC
Q 026360          107 -----RGMFDKDRIA-KM-------KK-GVLIVNNARGAIMDTQAVVDACSSG  145 (240)
Q Consensus       107 -----~~~i~~~~l~-~m-------k~-gailIN~srg~~vd~~aL~~aL~~g  145 (240)
                           ..++.+-.+. ..       ++ ..+=|.-+.|+.=...-+.+.|+..
T Consensus        90 a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~  142 (488)
T PRK03369         90 AAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAA  142 (488)
T ss_pred             HHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence                 1122221221 11       12 2344555668887777788888763

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=97.28  E-value=0.0025  Score=56.51  Aligned_cols=107  Identities=13%  Similarity=0.177  Sum_probs=75.6

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhh--------
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKT--------  106 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t--------  106 (240)
                      .|++++|||--.--..+++.|.+.|++|.++.-..  .+ ....|+..+++.+++++++|+|++-.|.+.+.        
T Consensus         1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~--~~-~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~   77 (296)
T PRK08306          1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQ--LD-HGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFS   77 (296)
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccc--cc-cccCCceeeccHHHHhccCCEEEECCccccCCceeecccc
Confidence            37899999999989999999999999998765321  11 12337777767889999999999988864322        


Q ss_pred             --hhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccE
Q 026360          107 --RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAG  149 (240)
Q Consensus       107 --~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~g  149 (240)
                        .--++.+.++.|+++.+++ ++.+.   .. +-+.+.+.++..
T Consensus        78 ~~~~~~~~~~l~~l~~~~~v~-~G~~~---~~-~~~~~~~~gi~~  117 (296)
T PRK08306         78 NEKLVLTEELLELTPEHCTIF-SGIAN---PY-LKELAKETNRKL  117 (296)
T ss_pred             ccCCcchHHHHHhcCCCCEEE-EecCC---HH-HHHHHHHCCCeE
Confidence              1113578899999998544 34332   22 446667777773

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=97.28  E-value=0.0011  Score=59.43  Aligned_cols=91  Identities=22%  Similarity=0.266  Sum_probs=65.6

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceec-----CCHHhhcC---cCCEEEEcCCCCh
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDTMLP---KCDIVVVNTPLTE  104 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell~---~aDiVvl~lp~~~  104 (240)
                      ..|.+|.|+|.|.+|...++.++..|. +|++.++++...+.++++|+..+     .+++++..   ..|+++-++... 
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~-  246 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHP-  246 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCH-
Confidence            368999999999999999999999998 58888887767777777886432     12333332   268888777521 


Q ss_pred             hhhhcccHHHHccCCCCCEEEEcCC
Q 026360          105 KTRGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       105 ~t~~~i~~~~l~~mk~gailIN~sr  129 (240)
                      .   . ....++.++++..++.++.
T Consensus       247 ~---~-~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        247 S---S-INTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             H---H-HHHHHHHhhcCCEEEEEcc
Confidence            1   1 1345667888888888863

>PRK06223 malate dehydrogenase; Reviewed

Probab=97.27  E-value=0.002  Score=57.17  Aligned_cols=63  Identities=24%  Similarity=0.364  Sum_probs=44.3

Q ss_pred             CeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhH-HH----h---cC--c--eecCCHHhhcCcCCEEEEcC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-EK----E---TG--A--KFEEDLDTMLPKCDIVVVNT  100 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~-~~----~---~g--~--~~~~~l~ell~~aDiVvl~l  100 (240)
                      ++|+|||.|.+|..+|..+...|. +|..+|+++..... ..    .   .+  .  ....+.+ .+++||+|+++.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~-~~~~aDiVii~~   78 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYE-DIAGSDVVVITA   78 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHH-HHCCCCEEEECC
Confidence            689999999999999999987664 99999986533211 11    0   01  1  1223554 478999999986

>PRK00779 ornithine carbamoyltransferase; Provisional

Probab=97.24  E-value=0.0024  Score=56.84  Aligned_cols=95  Identities=19%  Similarity=0.265  Sum_probs=67.0

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCCh--hH----HHhcC--ceecCCHHhhcCcCCEEEEcC---
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP--QL----EKETG--AKFEEDLDTMLPKCDIVVVNT---  100 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~--~~----~~~~g--~~~~~~l~ell~~aDiVvl~l---  100 (240)
                      .+.|++|+++|- +++.++++..+..+|++|.+..|.....  +.    ++..|  +...++++++++++|+|..-.   
T Consensus       149 ~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~  228 (304)
T PRK00779        149 SLKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVS  228 (304)
T ss_pred             CcCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCccc
Confidence            488999999996 8999999999999999999998754322  12    23345  345679999999999998752   


Q ss_pred             -CCCh---h-----hhhcccHHHHccCCCCCEEEEc
Q 026360          101 -PLTE---K-----TRGMFDKDRIAKMKKGVLIVNN  127 (240)
Q Consensus       101 -p~~~---~-----t~~~i~~~~l~~mk~gailIN~  127 (240)
                       +...   +     ...-++++.++.+|++++|..+
T Consensus       229 ~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHp  264 (304)
T PRK00779        229 MGQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHC  264 (304)
T ss_pred             cccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecC
Confidence             1100   1     1223566677777777766554

>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]

Probab=97.24  E-value=0.0012  Score=58.37  Aligned_cols=67  Identities=19%  Similarity=0.339  Sum_probs=52.5

Q ss_pred             ccCCCeEEEEc---cChHHHHHHHHhccCCCEEEEEcCCCCCh-----hHHHhcC-c-eecCCHHhhcCcCCEEEEc
Q 026360           33 DLEGKTVGTVG---CGRIGKLLLQRLKPFNCNLLYHDRVKMDP-----QLEKETG-A-KFEEDLDTMLPKCDIVVVN   99 (240)
Q Consensus        33 ~l~g~~vgIIG---~G~iG~~~A~~l~~~G~~V~~~d~~~~~~-----~~~~~~g-~-~~~~~l~ell~~aDiVvl~   99 (240)
                      .+.|++|+|+|   +|++.++.++.|+.||.+|..+.|.....     +.....| . ...+..+|.++++|++.+.
T Consensus       155 ~~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~l  231 (316)
T COG0540         155 RLDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKGGVVVEHDSDEEVIEEADVLYML  231 (316)
T ss_pred             CcCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCCchhHHHHHhhcCceEEEecchhhhhccCCEEEee
Confidence            48999999999   89999999999999999999999865433     3333333 2 3344566699999999775

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.24  E-value=0.0067  Score=54.23  Aligned_cols=95  Identities=9%  Similarity=0.014  Sum_probs=70.8

Q ss_pred             HHHHHHHHhccCCCEEEEEcCCCCChh-------H-----------HHhcC-------------ceecCC--HHhhcCcC
Q 026360           47 IGKLLLQRLKPFNCNLLYHDRVKMDPQ-------L-----------EKETG-------------AKFEED--LDTMLPKC   93 (240)
Q Consensus        47 iG~~~A~~l~~~G~~V~~~d~~~~~~~-------~-----------~~~~g-------------~~~~~~--l~ell~~a   93 (240)
                      ||..+|..+...|++|..||+++...+       .           ....|             +....+  ..+.+++|
T Consensus         1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a   80 (314)
T PRK08269          1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA   80 (314)
T ss_pred             CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence            688999999989999999999873210       0           00111             222222  56788999


Q ss_pred             CEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHH
Q 026360           94 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  143 (240)
Q Consensus        94 DiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~  143 (240)
                      |+|+-++|.+.+.+..+..+..+.++++++|  ++.-+.+....|.+.++
T Consensus        81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~  128 (314)
T PRK08269         81 DLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVA  128 (314)
T ss_pred             CEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcC
Confidence            9999999999998888888888889999998  45556677788888774

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=97.23  E-value=0.0012  Score=59.69  Aligned_cols=66  Identities=27%  Similarity=0.300  Sum_probs=44.5

Q ss_pred             CeEEEEccChHHHHHHHHhcc-CCCEEEEEc-CCCCChhH-HHhc------------------CceecCCHHhhcCcCCE
Q 026360           37 KTVGTVGCGRIGKLLLQRLKP-FNCNLLYHD-RVKMDPQL-EKET------------------GAKFEEDLDTMLPKCDI   95 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~-~G~~V~~~d-~~~~~~~~-~~~~------------------g~~~~~~l~ell~~aDi   95 (240)
                      .+|||+|+|+||+.+++.+.. -++++.+.. +.+..... +...                  ++....++++++.++|+
T Consensus         2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV   81 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI   81 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence            479999999999999998875 478876654 33211111 1111                  23333567888889999


Q ss_pred             EEEcCCC
Q 026360           96 VVVNTPL  102 (240)
Q Consensus        96 Vvl~lp~  102 (240)
                      |+.|+|.
T Consensus        82 VIdaT~~   88 (341)
T PRK04207         82 VVDATPG   88 (341)
T ss_pred             EEECCCc
Confidence            9999983

>PLN02342 ornithine carbamoyltransferase

Probab=97.22  E-value=0.0032  Score=57.02  Aligned_cols=96  Identities=15%  Similarity=0.147  Sum_probs=67.8

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCCh--hH---HHhcC---ceecCCHHhhcCcCCEEEEcC---
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP--QL---EKETG---AKFEEDLDTMLPKCDIVVVNT---  100 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~--~~---~~~~g---~~~~~~l~ell~~aDiVvl~l---  100 (240)
                      .+.|++|+++|- .++.++++..+..+|++|.+..|.....  +.   ++..|   +...+++++.++++|+|....   
T Consensus       191 ~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s  270 (348)
T PLN02342        191 RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWAS  270 (348)
T ss_pred             CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCccc
Confidence            488999999995 5799999999999999999998754322  11   22233   455689999999999998863   


Q ss_pred             -CCChh--------hhhcccHHHHccCCCCCEEEEcC
Q 026360          101 -PLTEK--------TRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       101 -p~~~~--------t~~~i~~~~l~~mk~gailIN~s  128 (240)
                       ...+.        ....++.+.++.+|++++|..+.
T Consensus       271 ~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHpL  307 (348)
T PLN02342        271 MGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHCL  307 (348)
T ss_pred             cccchhhHHHHHhccCCccCHHHHhccCCCcEEeCCC
Confidence             11111        11345777777778777776653

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=97.21  E-value=0.0014  Score=59.27  Aligned_cols=93  Identities=15%  Similarity=0.221  Sum_probs=58.3

Q ss_pred             CeEEEEcc-ChHHHHHHHHhccC-CCEEE-EEcCCCCChh-HHHhcC-------cee-cCCHHhhcCcCCEEEEcCCCCh
Q 026360           37 KTVGTVGC-GRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQ-LEKETG-------AKF-EEDLDTMLPKCDIVVVNTPLTE  104 (240)
Q Consensus        37 ~~vgIIG~-G~iG~~~A~~l~~~-G~~V~-~~d~~~~~~~-~~~~~g-------~~~-~~~l~ell~~aDiVvl~lp~~~  104 (240)
                      ++|+|+|. |.+|+.+++.|... +.++. ++++.....+ .....+       ... ..+.++++.++|+|++|+|.. 
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~-   79 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG-   79 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch-
Confidence            47999998 99999999999877 67777 4454331111 111111       111 114566667899999999943 


Q ss_pred             hhhhcccHHHHcc-CCCCCEEEEcCCCcccCH
Q 026360          105 KTRGMFDKDRIAK-MKKGVLIVNNARGAIMDT  135 (240)
Q Consensus       105 ~t~~~i~~~~l~~-mk~gailIN~srg~~vd~  135 (240)
                      ..     .+.... .+.|..+|+.|..--.+.
T Consensus        80 ~s-----~~~~~~~~~~G~~VIDlS~~fR~~~  106 (346)
T TIGR01850        80 VS-----AELAPELLAAGVKVIDLSADFRLKD  106 (346)
T ss_pred             HH-----HHHHHHHHhCCCEEEeCChhhhcCC
Confidence            22     222222 256899999996555553

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=97.19  E-value=0.00082  Score=61.32  Aligned_cols=89  Identities=17%  Similarity=0.198  Sum_probs=57.2

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCC-hhHHHhcCceec---CC---HHhhcCcCCEEEEcCCCChhhh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFE---ED---LDTMLPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~~g~~~~---~~---l~ell~~aDiVvl~lp~~~~t~  107 (240)
                      .|.+|.|.|.|.+|..+++.++.+|.+|++.+++... .+.++++|+..+   .+   +.+.....|+++-++....   
T Consensus       178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~~~---  254 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEH---  254 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCCcHH---
Confidence            5899999999999999999999999999888865432 344556665322   11   1122234577766654211   


Q ss_pred             hcccHHHHccCCCCCEEEEcC
Q 026360          108 GMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~s  128 (240)
                       . -...++.++++..++.++
T Consensus       255 -~-~~~~~~~l~~~G~iv~vG  273 (375)
T PLN02178        255 -A-LLPLFSLLKVSGKLVALG  273 (375)
T ss_pred             -H-HHHHHHhhcCCCEEEEEc
Confidence             1 123455567777777665

>PLN02527 aspartate carbamoyltransferase

Probab=97.19  E-value=0.0041  Score=55.44  Aligned_cols=96  Identities=20%  Similarity=0.284  Sum_probs=65.5

Q ss_pred             ccCCCeEEEEccC---hHHHHHHHHhccC-CCEEEEEcCCCC-Ch-hH---HHhcCc--eecCCHHhhcCcCCEEEEcCC
Q 026360           33 DLEGKTVGTVGCG---RIGKLLLQRLKPF-NCNLLYHDRVKM-DP-QL---EKETGA--KFEEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        33 ~l~g~~vgIIG~G---~iG~~~A~~l~~~-G~~V~~~d~~~~-~~-~~---~~~~g~--~~~~~l~ell~~aDiVvl~lp  101 (240)
                      ++.|.+|+++|-+   ++.++++..+..+ |++|.+..|... .. +.   +++.|.  ...+++++.++++|+|....-
T Consensus       148 ~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~~  227 (306)
T PLN02527        148 RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTRI  227 (306)
T ss_pred             CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECCc
Confidence            4889999999965   6899999998887 999999887542 11 11   222343  446799999999999988542


Q ss_pred             CCh------h-h-----hhcccHHHHccCCCCCEEEEcC
Q 026360          102 LTE------K-T-----RGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       102 ~~~------~-t-----~~~i~~~~l~~mk~gailIN~s  128 (240)
                      ..+      . .     ...++.+.++..++++++..+.
T Consensus       228 q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHcl  266 (306)
T PLN02527        228 QRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPL  266 (306)
T ss_pred             chhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCC
Confidence            111      0 1     1335666677777777666553

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=97.18  E-value=0.0025  Score=56.15  Aligned_cols=93  Identities=18%  Similarity=0.244  Sum_probs=61.4

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHH-hcC---c-eecCCHHhh--cCcCCEEEEcCCCC
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEK-ETG---A-KFEEDLDTM--LPKCDIVVVNTPLT  103 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~-~~g---~-~~~~~l~el--l~~aDiVvl~lp~~  103 (240)
                      .+..|+++.|+|.|..+++++..|+..|. +|++++|+..+.+... .++   . .......++  ..++|+||.++|..
T Consensus       122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~G  201 (283)
T COG0169         122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVG  201 (283)
T ss_pred             cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCC
Confidence            45678999999999999999999999996 6999999764433322 222   1 011122222  22699999999965


Q ss_pred             hhhh---hcccHHHHccCCCCCEEEEc
Q 026360          104 EKTR---GMFDKDRIAKMKKGVLIVNN  127 (240)
Q Consensus       104 ~~t~---~~i~~~~l~~mk~gailIN~  127 (240)
                      -.-.   ..++   ...++++.++.++
T Consensus       202 m~~~~~~~~~~---~~~l~~~~~v~D~  225 (283)
T COG0169         202 MAGPEGDSPVP---AELLPKGAIVYDV  225 (283)
T ss_pred             CCCCCCCCCCc---HHhcCcCCEEEEe
Confidence            3322   1233   4456777777666

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=97.18  E-value=0.0038  Score=55.18  Aligned_cols=70  Identities=19%  Similarity=0.273  Sum_probs=49.1

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCC---Chh-HHHhcC------ceecCCH------HhhcCcCC
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKM---DPQ-LEKETG------AKFEEDL------DTMLPKCD   94 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~---~~~-~~~~~g------~~~~~~l------~ell~~aD   94 (240)
                      .++.|+++.|+|.|..+++++..|...|. +|++++|+..   +.+ .+..++      +.. .++      ++.+.++|
T Consensus       120 ~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~-~~~~~~~~l~~~~~~aD  198 (288)
T PRK12749        120 FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTV-TDLADQQAFAEALASAD  198 (288)
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEE-echhhhhhhhhhcccCC
Confidence            45789999999999999999998888887 6999999753   111 222221      111 222      23456789


Q ss_pred             EEEEcCCC
Q 026360           95 IVVVNTPL  102 (240)
Q Consensus        95 iVvl~lp~  102 (240)
                      +|+.++|.
T Consensus       199 ivINaTp~  206 (288)
T PRK12749        199 ILTNGTKV  206 (288)
T ss_pred             EEEECCCC
Confidence            99999985

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=97.17  E-value=0.0024  Score=59.64  Aligned_cols=125  Identities=18%  Similarity=0.254  Sum_probs=77.5

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhH--H--HhcCceec--CCHHhhcCcCCEEEEcC--CC-Ch
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL--E--KETGAKFE--EDLDTMLPKCDIVVVNT--PL-TE  104 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~--~--~~~g~~~~--~~l~ell~~aDiVvl~l--p~-~~  104 (240)
                      +.+++|.|+|+|.-|.++|+.|++.|++|+++|.++.+...  .  ...++...  ....+.+.++|+|+..-  |. +|
T Consensus         5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p   84 (448)
T COG0771           5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHP   84 (448)
T ss_pred             ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCH
Confidence            44999999999999999999999999999999966544111  1  12343322  11225678899998862  22 22


Q ss_pred             hh-------hhcc-cHHHHccC-CCC-CEEEEcCCCcccCHHHHHHHHHh--------CCccEEEeeCCCCC
Q 026360          105 KT-------RGMF-DKDRIAKM-KKG-VLIVNNARGAIMDTQAVVDACSS--------GHIAGYSGDVWNPQ  158 (240)
Q Consensus       105 ~t-------~~~i-~~~~l~~m-k~g-ailIN~srg~~vd~~aL~~aL~~--------g~i~ga~lDV~~~E  158 (240)
                      ..       ..++ +-+.+-+. ++. .+-|.-+.|+.=.+.-+...|++        |.|...++|+..++
T Consensus        85 ~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~  156 (448)
T COG0771          85 LVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQA  156 (448)
T ss_pred             HHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhccc
Confidence            10       1122 22334333 122 44444455776666666777765        56667778887663

>PRK02255 putrescine carbamoyltransferase; Provisional

Probab=97.17  E-value=0.0033  Score=56.76  Aligned_cols=95  Identities=15%  Similarity=0.133  Sum_probs=65.3

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCC-C-hhHH-------HhcC--ceecCCHHhhcCcCCEEEEcC
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM-D-PQLE-------KETG--AKFEEDLDTMLPKCDIVVVNT  100 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~-~-~~~~-------~~~g--~~~~~~l~ell~~aDiVvl~l  100 (240)
                      .+.|++|+++|- .++.++++..+..+|++|.++.|... . .+..       ...|  +...+++++.++++|+|..-.
T Consensus       151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~  230 (338)
T PRK02255        151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTDV  230 (338)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcc
Confidence            588999999995 78999999999999999999987632 1 1111       1224  445679999999999998833


Q ss_pred             -----CCC---hh------hhhcccHHHHccCCCCCEEEEc
Q 026360          101 -----PLT---EK------TRGMFDKDRIAKMKKGVLIVNN  127 (240)
Q Consensus       101 -----p~~---~~------t~~~i~~~~l~~mk~gailIN~  127 (240)
                           ...   ++      ...-++++.++.+|++++|..+
T Consensus       231 w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHp  271 (338)
T PRK02255        231 WYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHC  271 (338)
T ss_pred             cHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCC
Confidence                 110   00      0133566666666666666554

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=97.17  E-value=0.0013  Score=58.31  Aligned_cols=112  Identities=18%  Similarity=0.288  Sum_probs=63.1

Q ss_pred             EEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChh-----HHHh---cC----ceecCCHHhhcCcCCEEEEcCCC--C
Q 026360           39 VGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-----LEKE---TG----AKFEEDLDTMLPKCDIVVVNTPL--T  103 (240)
Q Consensus        39 vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~-----~~~~---~g----~~~~~~l~ell~~aDiVvl~lp~--~  103 (240)
                      |+|||.|.||..+|..+...|. +|+.+|+++....     ....   .+    +....+.+ .+++||+|+++...  .
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~-~l~dADiVIit~g~p~~   79 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYE-DIAGSDVVVITAGIPRK   79 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHH-HhCCCCEEEEecCCCCC
Confidence            6899999999999998886665 9999998754221     0110   01    12224554 48999999997731  1


Q ss_pred             h---------hhhhccc--HHHHccCCCCCEEEEcCCCcccCHHHHHHHH--HhCCccEEE
Q 026360          104 E---------KTRGMFD--KDRIAKMKKGVLIVNNARGAIMDTQAVVDAC--SSGHIAGYS  151 (240)
Q Consensus       104 ~---------~t~~~i~--~~~l~~mk~gailIN~srg~~vd~~aL~~aL--~~g~i~ga~  151 (240)
                      +         .+..++.  .+.+....|++++|+++-..=+-...+.+..  ...++.|.+
T Consensus        80 ~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGlg  140 (300)
T cd01339          80 PGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMA  140 (300)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEec
Confidence            1         1111111  1223334577888888743323333333332  123566655

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=97.16  E-value=0.0012  Score=64.12  Aligned_cols=92  Identities=21%  Similarity=0.237  Sum_probs=65.8

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec----CCHHhh----cCcCCEEEEcCCCChhhh
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLDTM----LPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~el----l~~aDiVvl~lp~~~~t~  107 (240)
                      ..++-|+|+|++|+.+++.|...|.++++.|.++...+..++.|....    ++.+-+    +++||.+++++++.+.+.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~  479 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM  479 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence            457999999999999999999999999999988766666666665321    222222    578999999999766654


Q ss_pred             hcccHHHHccCCCCCEEEEcCC
Q 026360          108 GMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~sr  129 (240)
                      .++  ...+.+.|...++--+|
T Consensus       480 ~i~--~~~r~~~p~~~IiaRa~  499 (601)
T PRK03659        480 KIV--ELCQQHFPHLHILARAR  499 (601)
T ss_pred             HHH--HHHHHHCCCCeEEEEeC
Confidence            443  33455666666655443

>TIGR00658 orni_carb_tr ornithine carbamoyltransferase

Probab=97.14  E-value=0.0033  Score=55.99  Aligned_cols=96  Identities=16%  Similarity=0.227  Sum_probs=67.3

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCCh-hH--------HHhcC--ceecCCHHhhcCcCCEEEEcC
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP-QL--------EKETG--AKFEEDLDTMLPKCDIVVVNT  100 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~-~~--------~~~~g--~~~~~~l~ell~~aDiVvl~l  100 (240)
                      .+.|.+|+++|- +++.++++..+..+|++|.+..|..... +.        +...|  +...+++++.++++|+|..-.
T Consensus       145 ~l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~  224 (304)
T TIGR00658       145 KLKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDV  224 (304)
T ss_pred             CCCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence            488999999995 7999999999999999999998754322 11        22334  345679999999999998853


Q ss_pred             --CCC-----hh-----hhhcccHHHHccCCCCCEEEEcC
Q 026360          101 --PLT-----EK-----TRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       101 --p~~-----~~-----t~~~i~~~~l~~mk~gailIN~s  128 (240)
                        ...     ++     ....++++.++.+|+++++..+.
T Consensus       225 w~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHpl  264 (304)
T TIGR00658       225 WVSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHCL  264 (304)
T ss_pred             cccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECCC
Confidence              100     01     12245777777777777766553

Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=97.14  E-value=0.0038  Score=58.88  Aligned_cols=104  Identities=13%  Similarity=0.141  Sum_probs=70.2

Q ss_pred             ccCCCeEEEEcc----------ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc----------------------Cc
Q 026360           33 DLEGKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----------------------GA   80 (240)
Q Consensus        33 ~l~g~~vgIIG~----------G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~----------------------g~   80 (240)
                      .+.|++|+|+|+          ..-...+++.|...|.+|.+|||.-...+.....                      ++
T Consensus       321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (473)
T PLN02353        321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV  400 (473)
T ss_pred             ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence            488999999996          4578889999999999999999863221111111                      12


Q ss_pred             eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHH
Q 026360           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVV  139 (240)
Q Consensus        81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~  139 (240)
                      ....+.++.++++|+|+++++.. +.+.+--.+..+.|++..+++|. |+ ++|.+.+.
T Consensus       401 ~~~~~~~~a~~~aD~vvi~t~~~-ef~~l~~~~~~~~m~~~~~viD~-rn-~l~~~~~~  456 (473)
T PLN02353        401 SVVWDAYEATKGAHGICILTEWD-EFKTLDYQKIYDNMQKPAFVFDG-RN-VLDHEKLR  456 (473)
T ss_pred             eeeCCHHHHhcCCCEEEECCCCh-HhcccCHHHHHHhccCCCEEEEC-CC-CCCHHHHH
Confidence            44556778999999999999743 33333223335557766688885 44 44655543

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=97.13  E-value=0.0012  Score=63.35  Aligned_cols=88  Identities=16%  Similarity=0.217  Sum_probs=61.4

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec----CCHHh----hcCcCCEEEEcCCCChhhhh
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLDT----MLPKCDIVVVNTPLTEKTRG  108 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~e----ll~~aDiVvl~lp~~~~t~~  108 (240)
                      .++-|+|+|++|+.+|+.|+..|.+|+++|.++...+..++.|+...    .+.+-    -++++|.+++++++++++..
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~  497 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE  497 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence            46789999999999999999999999999987766666666665321    22221    24689999999987766555


Q ss_pred             cccHHHHccCCCCCEEEE
Q 026360          109 MFDKDRIAKMKKGVLIVN  126 (240)
Q Consensus       109 ~i~~~~l~~mk~gailIN  126 (240)
                      ++..  ...+.++..+|-
T Consensus       498 iv~~--~~~~~~~~~iia  513 (558)
T PRK10669        498 IVAS--AREKRPDIEIIA  513 (558)
T ss_pred             HHHH--HHHHCCCCeEEE
Confidence            4432  223345555553

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=97.13  E-value=0.0017  Score=56.02  Aligned_cols=91  Identities=13%  Similarity=0.181  Sum_probs=72.2

Q ss_pred             HHHHHHHhccCCCEEEEEcCCCCChh-----HHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCC
Q 026360           48 GKLLLQRLKPFNCNLLYHDRVKMDPQ-----LEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV  122 (240)
Q Consensus        48 G~~~A~~l~~~G~~V~~~d~~~~~~~-----~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~ga  122 (240)
                      |..+|..+...|++|+..+|+..-.+     ...+.|++.+++-.+..+.+.+.++-+|....|.++. ++.+..++.|+
T Consensus        33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-rei~~hvpEgA  111 (340)
T COG4007          33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-REILEHVPEGA  111 (340)
T ss_pred             chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH-HHHHhhCcCCc
Confidence            56778888888999999998753222     2345688888788889999999999999998887764 68999999999


Q ss_pred             EEEEcCCCcccCHHHHHHHH
Q 026360          123 LIVNNARGAIMDTQAVVDAC  142 (240)
Q Consensus       123 ilIN~srg~~vd~~aL~~aL  142 (240)
                      ++.|+..-+.+   .|+..|
T Consensus       112 VicnTCT~sp~---vLy~~L  128 (340)
T COG4007         112 VICNTCTVSPV---VLYYSL  128 (340)
T ss_pred             EecccccCchh---HHHHHh
Confidence            99999976544   455555

>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=97.12  E-value=0.0026  Score=56.77  Aligned_cols=67  Identities=16%  Similarity=0.200  Sum_probs=52.3

Q ss_pred             ccCCCeEEEEcc---ChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEc
Q 026360           33 DLEGKTVGTVGC---GRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVN   99 (240)
Q Consensus        33 ~l~g~~vgIIG~---G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~   99 (240)
                      .+.|.+|+++|=   +++.++++..+..+|+ +|.+..|....++......+...+++++.++++|+|...
T Consensus       154 ~l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~~  224 (310)
T PRK13814        154 HWNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVTL  224 (310)
T ss_pred             CcCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEEC
Confidence            478999999996   6999999999999999 899998754322221112355568999999999999873

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=97.12  E-value=0.0018  Score=57.89  Aligned_cols=94  Identities=18%  Similarity=0.201  Sum_probs=58.9

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCChh-HHHhc--------Cce-ecCCHHhhcCcCCEEEEcCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKET--------GAK-FEEDLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~-~~~~~--------g~~-~~~~l~ell~~aDiVvl~lp~  102 (240)
                      .++||+|||.|.+|..+|..+...|.  ++..+|.+..... ...++        ... ...+. +.+++||+|+++.-.
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~-~~~~~adivIitag~   83 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDY-SDCKDADLVVITAGA   83 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCH-HHhCCCCEEEEecCC
Confidence            57899999999999999999988887  7999998653321 11110        111 12234 458999999998642


Q ss_pred             --Ch-hhh--------hccc--HHHHccCCCCCEEEEcCC
Q 026360          103 --TE-KTR--------GMFD--KDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       103 --~~-~t~--------~~i~--~~~l~~mk~gailIN~sr  129 (240)
                        .| .++        .++.  .+.+..-.|++++++++-
T Consensus        84 ~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN  123 (315)
T PRK00066         84 PQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASN  123 (315)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence              11 111        1111  122333347889999883

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=97.11  E-value=0.037  Score=47.00  Aligned_cols=93  Identities=19%  Similarity=0.197  Sum_probs=61.2

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChh-----------------------HHHhc----Cceec
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-----------------------LEKET----GAKFE   83 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~-----------------------~~~~~----g~~~~   83 (240)
                      ..|.+++|.|+|+|.+|..+|+.|...|. +++++|.......                       ...+.    .+...
T Consensus        17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~   96 (228)
T cd00757          17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY   96 (228)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence            46899999999999999999999999998 5788875421100                       00011    01111


Q ss_pred             ------CCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcC
Q 026360           84 ------EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus        84 ------~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                            .++++++.++|+|+.|+. +..++..+++...+   .+..+|+++
T Consensus        97 ~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~---~~ip~i~~g  143 (228)
T cd00757          97 NERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK---LGKPLVSGA  143 (228)
T ss_pred             cceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEEE
Confidence                  234567888999988876 55667666654443   345577765

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=97.11  E-value=0.0019  Score=58.49  Aligned_cols=89  Identities=13%  Similarity=0.201  Sum_probs=60.1

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCC-hhHHHhcCceec---C---CHHhhcCcCCEEEEcCCCChhhh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFE---E---DLDTMLPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~~g~~~~---~---~l~ell~~aDiVvl~lp~~~~t~  107 (240)
                      .|.+|.|.|.|.+|..+++.++..|.+|++.+.+... ...++++|+..+   .   .+.+.....|+++-++....   
T Consensus       183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~~~---  259 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSAVH---  259 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCCHH---
Confidence            5889999999999999999999999998887765433 233455676322   1   12233334688887765211   


Q ss_pred             hcccHHHHccCCCCCEEEEcC
Q 026360          108 GMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~s  128 (240)
                       .+ .+.++.++++..++.++
T Consensus       260 -~~-~~~~~~l~~~G~iv~vG  278 (360)
T PLN02586        260 -AL-GPLLGLLKVNGKLITLG  278 (360)
T ss_pred             -HH-HHHHHHhcCCcEEEEeC
Confidence             11 24566788888888876

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.11  E-value=0.0014  Score=54.91  Aligned_cols=93  Identities=19%  Similarity=0.208  Sum_probs=60.8

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCCh-------------------h----HHHhc--Cce----
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-------------------Q----LEKET--GAK----   81 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~-------------------~----~~~~~--g~~----   81 (240)
                      ..|.+++|.|+|+|.+|..+|+.|...|. +++++|++....                   +    ...+.  .++    
T Consensus        17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~   96 (202)
T TIGR02356        17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTAL   96 (202)
T ss_pred             HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence            46899999999999999999999999998 699999762110                   0    11111  111    


Q ss_pred             --ec--CCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcC
Q 026360           82 --FE--EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus        82 --~~--~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                        ..  .+++++++++|+|+.++. +.+++..+++...+.-   ..+|..+
T Consensus        97 ~~~i~~~~~~~~~~~~D~Vi~~~d-~~~~r~~l~~~~~~~~---ip~i~~~  143 (202)
T TIGR02356        97 KERVTAENLELLINNVDLVLDCTD-NFATRYLINDACVALG---TPLISAA  143 (202)
T ss_pred             hhcCCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcC---CCEEEEE
Confidence              11  134567888999888874 4566666665444332   3355554

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=97.10  E-value=0.0012  Score=59.60  Aligned_cols=82  Identities=20%  Similarity=0.221  Sum_probs=57.5

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCC---------------------hh----HHHhc--Cce--
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMD---------------------PQ----LEKET--GAK--   81 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~---------------------~~----~~~~~--g~~--   81 (240)
                      ..|++++|.|||+|.+|..+|+.|...|. ++.++|++...                     .+    ...+.  ++.  
T Consensus        20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~   99 (338)
T PRK12475         20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIV   99 (338)
T ss_pred             HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEE
Confidence            46899999999999999999999999998 78889876311                     00    01111  111  


Q ss_pred             e------cCCHHhhcCcCCEEEEcCCCChhhhhcccHHH
Q 026360           82 F------EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (240)
Q Consensus        82 ~------~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~  114 (240)
                      .      ..+++++++++|+|+.++ ++.+++.+++.-.
T Consensus       100 ~~~~~~~~~~~~~~~~~~DlVid~~-D~~~~r~~in~~~  137 (338)
T PRK12475        100 PVVTDVTVEELEELVKEVDLIIDAT-DNFDTRLLINDLS  137 (338)
T ss_pred             EEeccCCHHHHHHHhcCCCEEEEcC-CCHHHHHHHHHHH
Confidence            1      124577889999998887 4566777766443

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=97.09  E-value=0.0038  Score=53.91  Aligned_cols=89  Identities=20%  Similarity=0.350  Sum_probs=59.5

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA  116 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~  116 (240)
                      .++-|+|.|.+++.+++.++..|++|+++|+++.   ....          .....++.+....|          .+.+.
T Consensus       101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~---~~~~----------~~~~~~~~~~~~~~----------~~~~~  157 (246)
T TIGR02964       101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA---EFPE----------DLPDGVATLVTDEP----------EAEVA  157 (246)
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc---cccc----------cCCCCceEEecCCH----------HHHHh
Confidence            5899999999999999999999999999997542   1100          01123333322222          12222


Q ss_pred             cCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360          117 KMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       117 ~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      .+.+++.+|=+.++.-.|.+.|..+|++....
T Consensus       158 ~~~~~t~vvi~th~h~~D~~~L~~aL~~~~~~  189 (246)
T TIGR02964       158 EAPPGSYFLVLTHDHALDLELCHAALRRGDFA  189 (246)
T ss_pred             cCCCCcEEEEEeCChHHHHHHHHHHHhCCCCc
Confidence            34567777778888888888888888544443

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=97.08  E-value=0.0016  Score=56.71  Aligned_cols=89  Identities=16%  Similarity=0.140  Sum_probs=61.4

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCCCChhHHHhcCceecCCH---Hh----hc--CcCCEEEEcCCCCh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDL---DT----ML--PKCDIVVVNTPLTE  104 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~~~l---~e----ll--~~aDiVvl~lp~~~  104 (240)
                      .|.+|.|+|.|.+|...++.++..|.+ |++.++++.+.+.++++|+..+-+.   .+    +.  ...|+++-++...+
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~~  199 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGATA  199 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCChH
Confidence            689999999999999999999999997 8888876656666777776432111   11    11  24688877764221


Q ss_pred             hhhhcccHHHHccCCCCCEEEEcC
Q 026360          105 KTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       105 ~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                          . ....++.++++..++.++
T Consensus       200 ----~-~~~~~~~l~~~G~iv~~G  218 (280)
T TIGR03366       200 ----A-VRACLESLDVGGTAVLAG  218 (280)
T ss_pred             ----H-HHHHHHHhcCCCEEEEec
Confidence                1 124466678888888776

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK04148 hypothetical protein; Provisional

Probab=97.07  E-value=0.0011  Score=51.98  Aligned_cols=68  Identities=13%  Similarity=0.125  Sum_probs=53.3

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-----CCHHhhcCcCCEEEEcCCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTMLPKCDIVVVNTPLT  103 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell~~aDiVvl~lp~~  103 (240)
                      +++++.+||+| -|..+|..|+..|++|++.|.++...+.+++.+...+     +.--++.+.+|+|...-|-.
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~   88 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPR   88 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCH
Confidence            57899999999 8999999999999999999998766665665554321     23346788999998888843

>PRK02102 ornithine carbamoyltransferase; Validated

Probab=97.06  E-value=0.0048  Score=55.57  Aligned_cols=96  Identities=18%  Similarity=0.267  Sum_probs=66.1

Q ss_pred             ccCCCeEEEEccC--hHHHHHHHHhccCCCEEEEEcCCCCChh---------HHHhcC--ceecCCHHhhcCcCCEEEEc
Q 026360           33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKMDPQ---------LEKETG--AKFEEDLDTMLPKCDIVVVN   99 (240)
Q Consensus        33 ~l~g~~vgIIG~G--~iG~~~A~~l~~~G~~V~~~d~~~~~~~---------~~~~~g--~~~~~~l~ell~~aDiVvl~   99 (240)
                      .+.|++|++||-+  ++.++++..+..+|++|.+..|......         .++..|  +...++++++++++|+|..-
T Consensus       152 ~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~  231 (331)
T PRK02102        152 PLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTD  231 (331)
T ss_pred             CCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence            4889999999986  8999999999999999999987542221         112234  34567999999999999885


Q ss_pred             CCCC-------hh-----hhhcccHHHHc-cCCCCCEEEEcC
Q 026360          100 TPLT-------EK-----TRGMFDKDRIA-KMKKGVLIVNNA  128 (240)
Q Consensus       100 lp~~-------~~-----t~~~i~~~~l~-~mk~gailIN~s  128 (240)
                      .=..       ++     ...-++++.++ .+|+++++..+.
T Consensus       232 ~w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~l  273 (331)
T PRK02102        232 VWVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHCL  273 (331)
T ss_pred             CcccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECCC
Confidence            3110       01     12234666666 367777766553

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.06  E-value=0.0086  Score=55.67  Aligned_cols=114  Identities=17%  Similarity=0.218  Sum_probs=72.9

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCCh----hHHHhcCceec--CCHHhhcCc-CCEEEEcC--CC-
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP----QLEKETGAKFE--EDLDTMLPK-CDIVVVNT--PL-  102 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~----~~~~~~g~~~~--~~l~ell~~-aDiVvl~l--p~-  102 (240)
                      ++.|+++.|+|.|.+|.++|+.|.+.|++|+++|+.....    +.....|+...  ....+++.. .|+|+...  |. 
T Consensus         2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~   81 (447)
T PRK02472          2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYT   81 (447)
T ss_pred             CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCC
Confidence            3679999999999999999999999999999999754221    22334465432  233344554 89888764  22 


Q ss_pred             Chhh-------hhcccH-HHHccC-CCCCEEEEcCCCcccCHHHHHHHHHhCC
Q 026360          103 TEKT-------RGMFDK-DRIAKM-KKGVLIVNNARGAIMDTQAVVDACSSGH  146 (240)
Q Consensus       103 ~~~t-------~~~i~~-~~l~~m-k~gailIN~srg~~vd~~aL~~aL~~g~  146 (240)
                      .+..       ..++.+ ++...+ +...+-|--+.|+.-...-+...|+...
T Consensus        82 ~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g  134 (447)
T PRK02472         82 NPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGG  134 (447)
T ss_pred             CHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCC
Confidence            2211       122332 232233 3345666666788888888888887643

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=97.06  E-value=0.0033  Score=55.79  Aligned_cols=88  Identities=17%  Similarity=0.177  Sum_probs=59.0

Q ss_pred             CCeEEEEccChHHHHHHHHhcc-CCCEEE-EEcCCCCCh--hHHHhcCcee-cCCHHhhcC-----cCCEEEEcCCCChh
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKP-FNCNLL-YHDRVKMDP--QLEKETGAKF-EEDLDTMLP-----KCDIVVVNTPLTEK  105 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~-~G~~V~-~~d~~~~~~--~~~~~~g~~~-~~~l~ell~-----~aDiVvl~lp~~~~  105 (240)
                      ..++||||.|.||+.++..+.. -++++. ++|+++...  ..+++.|+.. ..+.+++++     +.|+|+.++|..  
T Consensus         4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~--   81 (302)
T PRK08300          4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAG--   81 (302)
T ss_pred             CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHH--
Confidence            4689999999999997766654 466755 556655322  4456678764 468899885     588899999832  


Q ss_pred             hhhcccHHHHccCCCCCEEEEcC
Q 026360          106 TRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      ...   +......+.|..+|+-+
T Consensus        82 ~H~---e~a~~a~eaGk~VID~s  101 (302)
T PRK08300         82 AHV---RHAAKLREAGIRAIDLT  101 (302)
T ss_pred             HHH---HHHHHHHHcCCeEEECC
Confidence            111   11222356788888876

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.05  E-value=0.0015  Score=61.46  Aligned_cols=114  Identities=16%  Similarity=0.179  Sum_probs=72.7

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhH-HHhcCceecC--CHHhhcCcCCEEEEcC--C-CChhh
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-EKETGAKFEE--DLDTMLPKCDIVVVNT--P-LTEKT  106 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~-~~~~g~~~~~--~l~ell~~aDiVvl~l--p-~~~~t  106 (240)
                      .+.+++|.|+|+|..|.++|+.|...|++|.++|+....... ....|+....  ...+.+.++|+||..-  | ..|..
T Consensus        12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~   91 (473)
T PRK00141         12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLL   91 (473)
T ss_pred             cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHH
Confidence            578999999999999999999999999999999975432221 2345765432  2234567899887763  2 22221


Q ss_pred             -------hhcccHHHHc-c------C-CC-CCEEEEcCCCcccCHHHHHHHHHhCC
Q 026360          107 -------RGMFDKDRIA-K------M-KK-GVLIVNNARGAIMDTQAVVDACSSGH  146 (240)
Q Consensus       107 -------~~~i~~~~l~-~------m-k~-gailIN~srg~~vd~~aL~~aL~~g~  146 (240)
                             ..++.+-.+. .      + .+ ..+-|--+.|+.-...-+.+.|+...
T Consensus        92 ~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g  147 (473)
T PRK00141         92 VDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGG  147 (473)
T ss_pred             HHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence                   1122222221 1      1 12 24555556688888888888887644

>PRK04284 ornithine carbamoyltransferase; Provisional

Probab=97.04  E-value=0.0053  Score=55.34  Aligned_cols=96  Identities=16%  Similarity=0.259  Sum_probs=66.3

Q ss_pred             ccCCCeEEEEccC--hHHHHHHHHhccCCCEEEEEcCCCCCh--h-------HHHhcC--ceecCCHHhhcCcCCEEEEc
Q 026360           33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKMDP--Q-------LEKETG--AKFEEDLDTMLPKCDIVVVN   99 (240)
Q Consensus        33 ~l~g~~vgIIG~G--~iG~~~A~~l~~~G~~V~~~d~~~~~~--~-------~~~~~g--~~~~~~l~ell~~aDiVvl~   99 (240)
                      .+.|++|++||-+  ++.++++..+..+|++|.+..|....+  +       .++..|  +...+++++.++++|+|..-
T Consensus       152 ~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~  231 (332)
T PRK04284        152 PYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTD  231 (332)
T ss_pred             CcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEC
Confidence            4789999999964  899999999999999999998753221  1       112345  44568999999999999885


Q ss_pred             CCCC--------hh-----hhhcccHHHHccCC-CCCEEEEcC
Q 026360          100 TPLT--------EK-----TRGMFDKDRIAKMK-KGVLIVNNA  128 (240)
Q Consensus       100 lp~~--------~~-----t~~~i~~~~l~~mk-~gailIN~s  128 (240)
                      .=..        ++     ....++++.++.++ |+++|..+.
T Consensus       232 ~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHpl  274 (332)
T PRK04284        232 VWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHCL  274 (332)
T ss_pred             CcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECCC
Confidence            3110        00     12235667777775 477766654

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=97.04  E-value=0.0018  Score=57.70  Aligned_cols=65  Identities=18%  Similarity=0.214  Sum_probs=46.4

Q ss_pred             CeEEEEccChHHHHHHHHhccCC--CEEEEEcCCCCChh-HHHhc-Cce--------ecCCHHhhcCcCCEEEEcCCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQ-LEKET-GAK--------FEEDLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G--~~V~~~d~~~~~~~-~~~~~-g~~--------~~~~l~ell~~aDiVvl~lp~  102 (240)
                      ++|+|||.|.+|..+|..|...|  .+|..+|++..... .+.++ +..        ...+. +.+++||+|+++.+.
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~   77 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGA   77 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCC
Confidence            47999999999999999998888  57999998753322 11111 110        11344 458999999999875

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK01713 ornithine carbamoyltransferase; Provisional

Probab=97.03  E-value=0.0047  Score=55.69  Aligned_cols=96  Identities=16%  Similarity=0.180  Sum_probs=67.6

Q ss_pred             ccCCCeEEEEccC--hHHHHHHHHhccCCCEEEEEcCCCCCh-h--------HHHhcC--ceecCCHHhhcCcCCEEEEc
Q 026360           33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKMDP-Q--------LEKETG--AKFEEDLDTMLPKCDIVVVN   99 (240)
Q Consensus        33 ~l~g~~vgIIG~G--~iG~~~A~~l~~~G~~V~~~d~~~~~~-~--------~~~~~g--~~~~~~l~ell~~aDiVvl~   99 (240)
                      .+.|++|++||-+  ++.++++..+..+|++|.++.|....+ +        .++..|  +...+++++.++++|+|..-
T Consensus       153 ~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~  232 (334)
T PRK01713        153 PLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTD  232 (334)
T ss_pred             CcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence            4889999999975  689999999999999999998753221 1        112235  44568999999999999874


Q ss_pred             C----CCC-h--hh------hhcccHHHHccC-CCCCEEEEcC
Q 026360          100 T----PLT-E--KT------RGMFDKDRIAKM-KKGVLIVNNA  128 (240)
Q Consensus       100 l----p~~-~--~t------~~~i~~~~l~~m-k~gailIN~s  128 (240)
                      .    ... +  ..      ...++.+.++.. |++++|..+.
T Consensus       233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~l  275 (334)
T PRK01713        233 VWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCL  275 (334)
T ss_pred             ceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCC
Confidence            3    110 0  01      123577778775 6888887765

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=97.02  E-value=0.0013  Score=55.43  Aligned_cols=90  Identities=23%  Similarity=0.272  Sum_probs=63.5

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHH---HhcCcee---cCCHHhhcCcCCEEEEcCCCChh
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE---KETGAKF---EEDLDTMLPKCDIVVVNTPLTEK  105 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~---~~~g~~~---~~~l~ell~~aDiVvl~lp~~~~  105 (240)
                      .+|.|++|.|||-|.+|..=++.+...|.+|+++++.. .++..   ...++..   ..+.++ +..+++|+.++++.  
T Consensus         8 ~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~-~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d~--   83 (210)
T COG1648           8 LDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEF-EPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDDE--   83 (210)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc-cHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCCH--
Confidence            47899999999999999999999999999999999865 22221   1112111   113333 44599999998743  


Q ss_pred             hhhcccHHHHccCCCCCEEEEcC
Q 026360          106 TRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailIN~s  128 (240)
                         -+++.....+++-.++||+.
T Consensus        84 ---~ln~~i~~~a~~~~i~vNv~  103 (210)
T COG1648          84 ---ELNERIAKAARERRILVNVV  103 (210)
T ss_pred             ---HHHHHHHHHHHHhCCceecc
Confidence               34556666667767888885

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=97.02  E-value=0.0039  Score=55.67  Aligned_cols=114  Identities=15%  Similarity=0.201  Sum_probs=66.3

Q ss_pred             CeEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCChh-HHH----hc------CceecCCHHhhcCcCCEEEEcCCC-
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEK----ET------GAKFEEDLDTMLPKCDIVVVNTPL-  102 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~-~~~----~~------g~~~~~~l~ell~~aDiVvl~lp~-  102 (240)
                      .||+|||.|.+|..+|..+...|.  ++..+|.+..... .+.    ..      .+....+.++ +++||+|+++.-. 
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~~   82 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGAR   82 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCCC
Confidence            589999999999999998876554  6999998653221 111    11      1222245665 8999999997632 


Q ss_pred             -Ch-hhhh--------ccc--HHHHccCCCCCEEEEcCCCcccCHHHHHHH--HHhCCccEEE
Q 026360          103 -TE-KTRG--------MFD--KDRIAKMKKGVLIVNNARGAIMDTQAVVDA--CSSGHIAGYS  151 (240)
Q Consensus       103 -~~-~t~~--------~i~--~~~l~~mk~gailIN~srg~~vd~~aL~~a--L~~g~i~ga~  151 (240)
                       .+ .++.        ++-  .+.+....|++++++++-.-=+-...+.+.  +...++.|.+
T Consensus        83 ~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~k~sg~p~~~viG~g  145 (312)
T cd05293          83 QNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAWKLSGLPKHRVIGSG  145 (312)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHHHHHhCCCHHHEEecC
Confidence             11 1221        111  123344578899999983221222223333  4445666553

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.00  E-value=0.0067  Score=56.45  Aligned_cols=112  Identities=22%  Similarity=0.318  Sum_probs=71.2

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCC-h----hHHHhcCcee--cCCHHhhcCcCCEEEEcCCCChh
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-P----QLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEK  105 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~-~----~~~~~~g~~~--~~~l~ell~~aDiVvl~lp~~~~  105 (240)
                      ++.++++.|+|.|.+|.++|+.|...|++|+++|+.... .    +.....|+..  .+..++....+|+|+.+.-..+.
T Consensus         2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~   81 (450)
T PRK14106          2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD   81 (450)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC
Confidence            468999999999999999999999999999999986421 1    1122335432  22334556789999887543322


Q ss_pred             hh--------hc--cc-HHHHcc-CCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360          106 TR--------GM--FD-KDRIAK-MKKGVLIVNNARGAIMDTQAVVDACSS  144 (240)
Q Consensus       106 t~--------~~--i~-~~~l~~-mk~gailIN~srg~~vd~~aL~~aL~~  144 (240)
                      ..        ++  +. .+.+.. .+...+-|.-+.|+.-...-|...|+.
T Consensus        82 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~  132 (450)
T PRK14106         82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN  132 (450)
T ss_pred             CHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence            11        11  11 112222 232344555567888888888888875

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=96.99  E-value=0.0029  Score=56.59  Aligned_cols=96  Identities=17%  Similarity=0.116  Sum_probs=64.9

Q ss_pred             cCCCeEEEEccChHHHHHHHHhcc-------CCCEEEEEcCCCCChh----HHHh-----------------cCceecCC
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKP-------FNCNLLYHDRVKMDPQ----LEKE-----------------TGAKFEED   85 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~-------~G~~V~~~d~~~~~~~----~~~~-----------------~g~~~~~~   85 (240)
                      -.-++|+|||.|++|+++|+.+..       |..+|..|-.......    ..+-                 ..+..++|
T Consensus        19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d   98 (372)
T KOG2711|consen   19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD   98 (372)
T ss_pred             cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence            345799999999999999988753       2334544432211111    1110                 12345678


Q ss_pred             HHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCc
Q 026360           86 LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus        86 l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~  131 (240)
                      +.+.+.+||+++..+|..  -..-+-++.....|+++..|....|=
T Consensus        99 l~ea~~dADilvf~vPhQ--f~~~ic~~l~g~vk~~~~aISL~KG~  142 (372)
T KOG2711|consen   99 LVEAAKDADILVFVVPHQ--FIPRICEQLKGYVKPGATAISLIKGV  142 (372)
T ss_pred             HHHHhccCCEEEEeCChh--hHHHHHHHHhcccCCCCeEEEeecce
Confidence            999999999999999932  22224567888899999999998773

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=96.99  E-value=0.0028  Score=56.65  Aligned_cols=89  Identities=17%  Similarity=0.171  Sum_probs=65.7

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHH-hhcCcCCEEEEcCCCChhhhhcccHH
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLD-TMLPKCDIVVVNTPLTEKTRGMFDKD  113 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~-ell~~aDiVvl~lp~~~~t~~~i~~~  113 (240)
                      .|.+|.|.|.|.+|..+++.++..|.+|++.++++.+.+.++++|+..+-+.. +.-+..|+++.+....    .. ...
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~----~~-~~~  239 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG----GL-VPP  239 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH----HH-HHH
Confidence            48899999999999999999999999999988877677788888875432221 1123467777666532    12 345


Q ss_pred             HHccCCCCCEEEEcC
Q 026360          114 RIAKMKKGVLIVNNA  128 (240)
Q Consensus       114 ~l~~mk~gailIN~s  128 (240)
                      .++.++++..++.++
T Consensus       240 ~~~~l~~~G~~v~~G  254 (329)
T TIGR02822       240 ALEALDRGGVLAVAG  254 (329)
T ss_pred             HHHhhCCCcEEEEEe
Confidence            677889999888876

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=96.98  E-value=0.0012  Score=51.31  Aligned_cols=127  Identities=14%  Similarity=0.204  Sum_probs=73.6

Q ss_pred             hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEE
Q 026360           46 RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV  125 (240)
Q Consensus        46 ~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailI  125 (240)
                      .+.......|+. |++|.+++..  ..           +.+.+.++++|+++....      ..++++.++.+ |+..+|
T Consensus         6 ~~~~~~~~~l~~-~~~v~~~~~~--~~-----------~~~~~~l~~~d~ii~~~~------~~~~~~~l~~~-~~Lk~I   64 (133)
T PF00389_consen    6 PLPDEEIERLEE-GFEVEFCDSP--SE-----------EELAERLKDADAIIVGSG------TPLTAEVLEAA-PNLKLI   64 (133)
T ss_dssp             S-SHHHHHHHHH-TSEEEEESSS--SH-----------HHHHHHHTTESEEEESTT------STBSHHHHHHH-TT-SEE
T ss_pred             cCCHHHHHHHHC-CceEEEeCCC--CH-----------HHHHHHhCCCeEEEEcCC------CCcCHHHHhcc-ceeEEE
Confidence            444555666776 6688777721  11           134566888999987653      14567777777 444455


Q ss_pred             EcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHcc
Q 026360          126 NNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSH  205 (240)
Q Consensus       126 N~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g  205 (240)
                      .....++ |.-++ +++++.+|.-  .-    -|.....+.-++         +|+|.++..++..  .+.+|+.+|++|
T Consensus        65 ~~~~~G~-d~id~-~~a~~~gI~V--~n----~~g~~~~aVAE~---------a~~T~e~~~~~~~--~~~~ni~~~l~g  125 (133)
T PF00389_consen   65 STAGAGV-DNIDL-EAAKERGIPV--TN----VPGYNAEAVAEH---------AGYTDEARERMAE--IAAENIERFLNG  125 (133)
T ss_dssp             EESSSSC-TTB-H-HHHHHTTSEE--EE-----TTTTHHHHHHH---------HTGBHHHHHHHHH--HHHHHHHHHHTT
T ss_pred             EEccccc-CcccH-HHHhhCeEEE--EE----eCCcCCcchhcc---------chhHHHHHHHHHH--HHHHHHHHHHcC
Confidence            5544443 44444 4444555541  11    111100011111         1899999999999  999999999999


Q ss_pred             CCC-CCCc
Q 026360          206 KSN-SELK  212 (240)
Q Consensus       206 ~~~-~~v~  212 (240)
                      +++ +.||
T Consensus       126 ~~~~n~VN  133 (133)
T PF00389_consen  126 EPPENVVN  133 (133)
T ss_dssp             ST-TTBSS
T ss_pred             CCCCCCCC
Confidence            866 6665

The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=96.97  E-value=0.0034  Score=55.33  Aligned_cols=71  Identities=21%  Similarity=0.233  Sum_probs=50.0

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHH-Hhc----Cc---eecC--CHHhhcCcCCEEEEcCC
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLE-KET----GA---KFEE--DLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~-~~~----g~---~~~~--~l~ell~~aDiVvl~lp  101 (240)
                      ++.++++.|+|.|..|++++..|...|+ +|++++|+..+.+.. ..+    +.   ...+  +.++.+..+|+|+.++|
T Consensus       124 ~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp  203 (283)
T PRK14027        124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP  203 (283)
T ss_pred             CcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCC
Confidence            4678999999999999999999998997 589999975433322 211    11   1111  12345677999999998


Q ss_pred             CC
Q 026360          102 LT  103 (240)
Q Consensus       102 ~~  103 (240)
                      ..
T Consensus       204 ~G  205 (283)
T PRK14027        204 MG  205 (283)
T ss_pred             CC
Confidence            43

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=96.96  E-value=0.0029  Score=56.37  Aligned_cols=141  Identities=13%  Similarity=0.149  Sum_probs=81.7

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec------------CCHHhhcCcCCEEEEcCCCCh
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE------------EDLDTMLPKCDIVVVNTPLTE  104 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~------------~~l~ell~~aDiVvl~lp~~~  104 (240)
                      ++|.|+|.|.||..++..|...|..|+.+.|++. .+..++.|....            ....+.+..+|+|++++... 
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~-   78 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAY-   78 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEeccc-
Confidence            5899999999999999999999977888887653 344444443211            12235566899999998632 


Q ss_pred             hhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCC-CCCCCCeEEcCCCCCCc
Q 026360          105 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHP-WRYMPNQAMTPHVSGTT  182 (240)
Q Consensus       105 ~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~-l~~~~nv~~TPH~a~~t  182 (240)
                      ++...+ +.....+++.+.++-+- -++=.++.+.+.....++.+ ++..+...-..+.+- ......+.+.+..++.+
T Consensus        79 q~~~al-~~l~~~~~~~t~vl~lq-NG~g~~e~l~~~~~~~~il~-G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~  154 (307)
T COG1893          79 QLEEAL-PSLAPLLGPNTVVLFLQ-NGLGHEEELRKILPKETVLG-GVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD  154 (307)
T ss_pred             cHHHHH-HHhhhcCCCCcEEEEEe-CCCcHHHHHHHhCCcceEEE-EEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence            233332 35556677777666443 33444555555555554442 333222111011111 12234566766666544

>PRK03515 ornithine carbamoyltransferase subunit I; Provisional

Probab=96.93  E-value=0.0041  Score=56.13  Aligned_cols=96  Identities=14%  Similarity=0.148  Sum_probs=65.2

Q ss_pred             ccCCCeEEEEccC--hHHHHHHHHhccCCCEEEEEcCCCCCh-h--------HHHhcC--ceecCCHHhhcCcCCEEEEc
Q 026360           33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKMDP-Q--------LEKETG--AKFEEDLDTMLPKCDIVVVN   99 (240)
Q Consensus        33 ~l~g~~vgIIG~G--~iG~~~A~~l~~~G~~V~~~d~~~~~~-~--------~~~~~g--~~~~~~l~ell~~aDiVvl~   99 (240)
                      .+.|++|++||-+  ++.++++..+..+|+++.+..|..... +        .++..|  +...+++++.++++|+|..-
T Consensus       153 ~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd  232 (336)
T PRK03515        153 AFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD  232 (336)
T ss_pred             CcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence            4889999999975  789999999999999999998754221 1        122234  45568999999999999885


Q ss_pred             CCCCh-------h------hhhcccHHHHccC-CCCCEEEEcC
Q 026360          100 TPLTE-------K------TRGMFDKDRIAKM-KKGVLIVNNA  128 (240)
Q Consensus       100 lp~~~-------~------t~~~i~~~~l~~m-k~gailIN~s  128 (240)
                      .=.+.       .      ...-++++.++.. |+++++..+.
T Consensus       233 ~W~sm~~~~~~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHcL  275 (336)
T PRK03515        233 VWVSMGEPKEVWAERIALLRPYQVNSKMMQLTGNPQVKFLHCL  275 (336)
T ss_pred             CcccCcchhHHHHHHHHhccCCccCHHHHhcccCCCCEEECCC
Confidence            31100       0      1123455666653 5666666553

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=96.93  E-value=0.002  Score=59.12  Aligned_cols=97  Identities=15%  Similarity=0.097  Sum_probs=62.1

Q ss_pred             CCCeEEEEcc-ChHHHHHHHHhccC-CCEEEEEcCCCCChhHHHh-c------CceecCCHH-hhcCcCCEEEEcCCCCh
Q 026360           35 EGKTVGTVGC-GRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKE-T------GAKFEEDLD-TMLPKCDIVVVNTPLTE  104 (240)
Q Consensus        35 ~g~~vgIIG~-G~iG~~~A~~l~~~-G~~V~~~d~~~~~~~~~~~-~------g~~~~~~l~-ell~~aDiVvl~lp~~~  104 (240)
                      .-++|+|+|. |.+|+.+.+.|... +++|..+.+.....+.... .      ......+++ +.++++|+|++++|.. 
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~-  115 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG-  115 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH-
Confidence            4569999995 99999999999877 7788777653222111111 0      011112222 2257899999999942 


Q ss_pred             hhhhcccHHHHccCCCCCEEEEcCCCcccCHHH
Q 026360          105 KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQA  137 (240)
Q Consensus       105 ~t~~~i~~~~l~~mk~gailIN~srg~~vd~~a  137 (240)
                           ...+....|+.|..+|+.|..-..+.++
T Consensus       116 -----~s~~i~~~~~~g~~VIDlSs~fRl~~~~  143 (381)
T PLN02968        116 -----TTQEIIKALPKDLKIVDLSADFRLRDIA  143 (381)
T ss_pred             -----HHHHHHHHHhCCCEEEEcCchhccCCcc
Confidence                 2334444456789999999766666553

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=96.90  E-value=0.0048  Score=54.44  Aligned_cols=88  Identities=22%  Similarity=0.274  Sum_probs=56.7

Q ss_pred             CeEEEEccChHHHHHHHHhc-cCCCEEE-EEcCCCCC--hhHHHhcCce-ecCCHHhhcC--cCCEEEEcCCCChhhhhc
Q 026360           37 KTVGTVGCGRIGKLLLQRLK-PFNCNLL-YHDRVKMD--PQLEKETGAK-FEEDLDTMLP--KCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~-~~G~~V~-~~d~~~~~--~~~~~~~g~~-~~~~l~ell~--~aDiVvl~lp~~~~t~~~  109 (240)
                      .++||||.|.||+.++..+. .-++++. ++|+++.+  ...+++.|+. ...+.+++++  +.|+|++++|......  
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e--   79 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHAR--   79 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHH--
Confidence            47999999999998876665 3467755 46766543  2445667764 3457888885  5788999998432211  


Q ss_pred             ccHHHHccCCCCCEEEEcCC
Q 026360          110 FDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~sr  129 (240)
                         .....++.|..+++-.-
T Consensus        80 ---~a~~al~aGk~VIdekP   96 (285)
T TIGR03215        80 ---HARLLAELGKIVIDLTP   96 (285)
T ss_pred             ---HHHHHHHcCCEEEECCc
Confidence               12233455666665543

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.90  E-value=0.0027  Score=61.86  Aligned_cols=90  Identities=13%  Similarity=0.153  Sum_probs=63.5

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec----CCHH----hhcCcCCEEEEcCCCChhhh
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLD----TMLPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~----ell~~aDiVvl~lp~~~~t~  107 (240)
                      ..++-|+|+|++|+.+++.|.+.|.++++.|.++...+..++.|...+    ++.+    .-++++|.+++++++++.+.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~  479 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL  479 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence            468999999999999999999999999999988766666666665321    2332    12468999999998666554


Q ss_pred             hcccHHHHccCCCCCEEEEc
Q 026360          108 GMFDKDRIAKMKKGVLIVNN  127 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~  127 (240)
                      .+.  ...+.+.|+..++--
T Consensus       480 ~i~--~~ar~~~p~~~iiaR  497 (621)
T PRK03562        480 QLV--ELVKEHFPHLQIIAR  497 (621)
T ss_pred             HHH--HHHHHhCCCCeEEEE
Confidence            443  344445566555443

>PRK05086 malate dehydrogenase; Provisional

Probab=96.89  E-value=0.0054  Score=54.77  Aligned_cols=94  Identities=27%  Similarity=0.294  Sum_probs=57.3

Q ss_pred             CeEEEEcc-ChHHHHHHHHhc---cCCCEEEEEcCCCCCh----hHHH-h--cCcee--cCCHHhhcCcCCEEEEcCCCC
Q 026360           37 KTVGTVGC-GRIGKLLLQRLK---PFNCNLLYHDRVKMDP----QLEK-E--TGAKF--EEDLDTMLPKCDIVVVNTPLT  103 (240)
Q Consensus        37 ~~vgIIG~-G~iG~~~A~~l~---~~G~~V~~~d~~~~~~----~~~~-~--~g~~~--~~~l~ell~~aDiVvl~lp~~  103 (240)
                      ++|+|||. |.+|..++..+.   ..+.++..+|+++...    +... .  ..+..  .+++.+.++++|+|++++-..
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~   80 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA   80 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence            58999999 999999998773   3456789999764321    1111 0  01111  246667789999999997531


Q ss_pred             hh---hhhc-------ccHHH---HccCCCCCEEEEcCCC
Q 026360          104 EK---TRGM-------FDKDR---IAKMKKGVLIVNNARG  130 (240)
Q Consensus       104 ~~---t~~~-------i~~~~---l~~mk~gailIN~srg  130 (240)
                      ..   ++.-       +-.+.   +....+.+++++++-.
T Consensus        81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP  120 (312)
T PRK05086         81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP  120 (312)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence            11   1111       11223   3334578899998754

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=96.88  E-value=0.0029  Score=64.65  Aligned_cols=68  Identities=18%  Similarity=0.300  Sum_probs=47.4

Q ss_pred             CCCeEEEEccChHHHHHHHHhccC-CCE-------------EEEEcCCCCChhHH-Hhc-Cc---ee-cCCHHhhc---C
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPF-NCN-------------LLYHDRVKMDPQLE-KET-GA---KF-EEDLDTML---P   91 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~-G~~-------------V~~~d~~~~~~~~~-~~~-g~---~~-~~~l~ell---~   91 (240)
                      +.++|+|||.|.||+.+|+.|... +.+             |.+.|++....+.. ... ++   .. +.+.+++.   +
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~  647 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS  647 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence            578999999999999999999753 333             88888875433322 222 32   22 34555544   6


Q ss_pred             cCCEEEEcCCC
Q 026360           92 KCDIVVVNTPL  102 (240)
Q Consensus        92 ~aDiVvl~lp~  102 (240)
                      ++|+|++++|.
T Consensus       648 ~~DaVIsalP~  658 (1042)
T PLN02819        648 QVDVVISLLPA  658 (1042)
T ss_pred             CCCEEEECCCc
Confidence            89999999995

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=96.85  E-value=0.0027  Score=55.20  Aligned_cols=97  Identities=27%  Similarity=0.230  Sum_probs=62.6

Q ss_pred             cccccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChh-----H-HHhcCceecCCHHhhcCcCCEEEEcCCC
Q 026360           30 RAYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-----L-EKETGAKFEEDLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        30 ~~~~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~-----~-~~~~g~~~~~~l~ell~~aDiVvl~lp~  102 (240)
                      .|.+|+..+++|+|+ |.||..+|+.|.+.+......-|......     . -.+.|-....+++..+.+.|+++-... 
T Consensus       161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs-  239 (351)
T COG5322         161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVAS-  239 (351)
T ss_pred             hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEee-
Confidence            467899999999996 99999999999998887666554322111     1 112333333455544555555444332 


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEEcCCCc
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN~srg~  131 (240)
                       ..+...|+.+   .+|||+++||-++..
T Consensus       240 -~~~g~~I~pq---~lkpg~~ivD~g~P~  264 (351)
T COG5322         240 -MPKGVEIFPQ---HLKPGCLIVDGGYPK  264 (351)
T ss_pred             -cCCCceechh---hccCCeEEEcCCcCc
Confidence             1234556655   479999999998665

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=96.83  E-value=0.0084  Score=50.66  Aligned_cols=92  Identities=27%  Similarity=0.269  Sum_probs=61.9

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCcee-c----CCHHhh-----cCcCCEEEEcCCCC
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-E----EDLDTM-----LPKCDIVVVNTPLT  103 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-~----~~l~el-----l~~aDiVvl~lp~~  103 (240)
                      ..|.+|.|.|.|.+|+.+++.++..|.+|++.++++...+.+...|... .    .+..+.     -...|+++.+++..
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~  212 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGP  212 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCH
Confidence            3688999999999999999999999999999988654444444444321 1    111111     24578888777631


Q ss_pred             hhhhhcccHHHHccCCCCCEEEEcCCC
Q 026360          104 EKTRGMFDKDRIAKMKKGVLIVNNARG  130 (240)
Q Consensus       104 ~~t~~~i~~~~l~~mk~gailIN~srg  130 (240)
                      .     .....++.|+++..+++++..
T Consensus       213 ~-----~~~~~~~~l~~~G~~v~~~~~  234 (271)
T cd05188         213 E-----TLAQALRLLRPGGRIVVVGGT  234 (271)
T ss_pred             H-----HHHHHHHhcccCCEEEEEccC
Confidence            1     223456677888888887744

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.83  E-value=0.0036  Score=59.23  Aligned_cols=116  Identities=18%  Similarity=0.209  Sum_probs=71.7

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCCh--hHHHhc--Cceec--CCHHhhcCcCCEEEEc--CCCC-
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKET--GAKFE--EDLDTMLPKCDIVVVN--TPLT-  103 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~--~~~~~~--g~~~~--~~l~ell~~aDiVvl~--lp~~-  103 (240)
                      ++.+++|.|+|+|..|.++|+.|+..|++|.++|......  ......  |+...  ....+.+.++|+|+..  .|.+ 
T Consensus         4 ~~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~   83 (498)
T PRK02006          4 DLQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLE   83 (498)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCcc
Confidence            3568999999999999999999999999999999654221  122233  33321  1124556789999886  3322 


Q ss_pred             ----hhh-------hhccc-HHHHcc-C--------CCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360          104 ----EKT-------RGMFD-KDRIAK-M--------KKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       104 ----~~t-------~~~i~-~~~l~~-m--------k~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                          |..       ..++. .+.+.. +        ++..+-|--+-|+.=...-+.+.|++....
T Consensus        84 ~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~  149 (498)
T PRK02006         84 AALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKK  149 (498)
T ss_pred             cccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCC
Confidence                211       12221 122211 2        223455555668887888888888765443

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.83  E-value=0.0013  Score=56.80  Aligned_cols=93  Identities=20%  Similarity=0.182  Sum_probs=60.1

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChh-----------------------HHHhc--Cc--ee-
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-----------------------LEKET--GA--KF-   82 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~-----------------------~~~~~--g~--~~-   82 (240)
                      ..|++++|+|||+|.+|..+++.|...|. ++.++|.......                       ...+.  .+  .. 
T Consensus        28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~  107 (245)
T PRK05690         28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETI  107 (245)
T ss_pred             HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence            46899999999999999999999999887 5888876531110                       00111  11  10 


Q ss_pred             ---c--CCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcC
Q 026360           83 ---E--EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus        83 ---~--~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                         .  .+.+++++++|+|+.++- +.+++..+++...+.   +..+|..+
T Consensus       108 ~~~i~~~~~~~~~~~~DiVi~~~D-~~~~r~~ln~~~~~~---~ip~v~~~  154 (245)
T PRK05690        108 NARLDDDELAALIAGHDLVLDCTD-NVATRNQLNRACFAA---KKPLVSGA  154 (245)
T ss_pred             eccCCHHHHHHHHhcCCEEEecCC-CHHHHHHHHHHHHHh---CCEEEEee
Confidence               1  123467888998888874 556677676544433   34466654

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=96.81  E-value=0.0058  Score=58.46  Aligned_cols=70  Identities=21%  Similarity=0.251  Sum_probs=47.7

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHH-HhcCcee--cCCHHhh-cCcCCEEEEcCCC
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETGAKF--EEDLDTM-LPKCDIVVVNTPL  102 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~-~~~g~~~--~~~l~el-l~~aDiVvl~lp~  102 (240)
                      ++.++++.|+|.|.+|++++..|...|++|++++|+....+.. ...+...  ..++.+. ...+|+|+.++|.
T Consensus       376 ~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~v  449 (529)
T PLN02520        376 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSV  449 (529)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccC
Confidence            5789999999999999999999999999999999864332222 2222211  1222222 2356788877774

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.80  E-value=0.069  Score=48.30  Aligned_cols=37  Identities=24%  Similarity=0.259  Sum_probs=34.0

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCC
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV   68 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~   68 (240)
                      ..|..++|.|||+|.+|..+|+.|...|. ++.++|.+
T Consensus        20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            46899999999999999999999999998 79999875

>PRK11891 aspartate carbamoyltransferase; Provisional

Probab=96.80  E-value=0.0092  Score=55.47  Aligned_cols=95  Identities=19%  Similarity=0.256  Sum_probs=65.1

Q ss_pred             ccCCCeEEEEcc---ChHHHHHHHHhccC-CCEEEEEcCCCC-ChhH----HHhcC--ceecCCHHhhcCcCCEEEEcCC
Q 026360           33 DLEGKTVGTVGC---GRIGKLLLQRLKPF-NCNLLYHDRVKM-DPQL----EKETG--AKFEEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        33 ~l~g~~vgIIG~---G~iG~~~A~~l~~~-G~~V~~~d~~~~-~~~~----~~~~g--~~~~~~l~ell~~aDiVvl~lp  101 (240)
                      .+.|++|+++|-   +++.++++..+..+ |++|.+..|... ..+.    +...|  +...+++++.++++|+|....-
T Consensus       238 ~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~~  317 (429)
T PRK11891        238 IVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATRI  317 (429)
T ss_pred             CcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence            388999999997   59999999998876 999999987543 1121    22234  4456899999999999988542


Q ss_pred             CChh----------hhhcccHHHHcc-CCCCCEEEEc
Q 026360          102 LTEK----------TRGMFDKDRIAK-MKKGVLIVNN  127 (240)
Q Consensus       102 ~~~~----------t~~~i~~~~l~~-mk~gailIN~  127 (240)
                      ..+.          ....++.+.++. .|+++++..+
T Consensus       318 q~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHc  354 (429)
T PRK11891        318 QKERFADESFEGYTPDFQINQALVDAVCKPDTLIMHP  354 (429)
T ss_pred             hhhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECC
Confidence            1110          012346666666 6666666554

>PRK12562 ornithine carbamoyltransferase subunit F; Provisional

Probab=96.77  E-value=0.012  Score=53.10  Aligned_cols=96  Identities=15%  Similarity=0.145  Sum_probs=66.6

Q ss_pred             ccCCCeEEEEccC--hHHHHHHHHhccCCCEEEEEcCCCCCh--hH-------HHhcC--ceecCCHHhhcCcCCEEEEc
Q 026360           33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKMDP--QL-------EKETG--AKFEEDLDTMLPKCDIVVVN   99 (240)
Q Consensus        33 ~l~g~~vgIIG~G--~iG~~~A~~l~~~G~~V~~~d~~~~~~--~~-------~~~~g--~~~~~~l~ell~~aDiVvl~   99 (240)
                      .+.|++|+++|-+  ++.++++..+..+|++|.+..|....+  +.       ++..|  +...+++++.++++|+|..-
T Consensus       153 ~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~  232 (334)
T PRK12562        153 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTD  232 (334)
T ss_pred             CcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence            4789999999975  799999999999999999998754211  11       12234  44567999999999999886


Q ss_pred             CC----C-Ch---h-----hhhcccHHHHccC-CCCCEEEEcC
Q 026360          100 TP----L-TE---K-----TRGMFDKDRIAKM-KKGVLIVNNA  128 (240)
Q Consensus       100 lp----~-~~---~-----t~~~i~~~~l~~m-k~gailIN~s  128 (240)
                      .=    . .+   +     ...-++.+.++.. +++++|..+.
T Consensus       233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcL  275 (334)
T PRK12562        233 VWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCL  275 (334)
T ss_pred             CccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCC
Confidence            41    0 00   1     1123566777764 6777777664

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=96.77  E-value=0.008  Score=52.46  Aligned_cols=106  Identities=21%  Similarity=0.236  Sum_probs=61.1

Q ss_pred             CeEEEEc-cChHHHHHHHHhcc-CCCEEE-EEcCCCC-C-hhHHHh------cCceecCCHHhhcCcCCEEEEcCCCChh
Q 026360           37 KTVGTVG-CGRIGKLLLQRLKP-FNCNLL-YHDRVKM-D-PQLEKE------TGAKFEEDLDTMLPKCDIVVVNTPLTEK  105 (240)
Q Consensus        37 ~~vgIIG-~G~iG~~~A~~l~~-~G~~V~-~~d~~~~-~-~~~~~~------~g~~~~~~l~ell~~aDiVvl~lp~~~~  105 (240)
                      .+|+|+| +|.||+.+++.+.. -++++. ++|+... . ......      .|+..+++++++...+|+|+.+.|  |+
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~--p~   79 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTT--PE   79 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCC--hH
Confidence            4899999 69999999998875 588855 4674321 1 111111      345556788888667999999986  32


Q ss_pred             hhhcccHHHHccCCCCCEEEEcCCCccc-CHHHHHHHHHhCCc
Q 026360          106 TRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHI  147 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailIN~srg~~v-d~~aL~~aL~~g~i  147 (240)
                      ...-   .....++.|.-+|-...|--. +.+.|.++.++..+
T Consensus        80 ~~~~---~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~  119 (266)
T TIGR00036        80 GVLN---HLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGI  119 (266)
T ss_pred             HHHH---HHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCc
Confidence            2211   222234444444443345322 23344555555443

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=96.74  E-value=0.0016  Score=51.31  Aligned_cols=65  Identities=18%  Similarity=0.220  Sum_probs=44.8

Q ss_pred             CeEEEEcc-ChHHHHHHHHhccCC--CEEEEEcCCCCChh-HHHh-------cC--ceecCCHHhhcCcCCEEEEcCC
Q 026360           37 KTVGTVGC-GRIGKLLLQRLKPFN--CNLLYHDRVKMDPQ-LEKE-------TG--AKFEEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        37 ~~vgIIG~-G~iG~~~A~~l~~~G--~~V~~~d~~~~~~~-~~~~-------~g--~~~~~~l~ell~~aDiVvl~lp  101 (240)
                      +||+|||. |.+|..+|..|...+  -++..+|+.....+ .+.+       .+  .....+..+.+++||+|+++.-
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag   78 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG   78 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence            58999999 999999999887554  57999998642111 1111       11  1222355677899999999873

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.74  E-value=0.021  Score=50.10  Aligned_cols=170  Identities=12%  Similarity=0.095  Sum_probs=104.5

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccC----CC-------EEEEEcCCCC------Ch-----hHHHhcCceecCCHHh
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPF----NC-------NLLYHDRVKM------DP-----QLEKETGAKFEEDLDT   88 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~----G~-------~V~~~d~~~~------~~-----~~~~~~g~~~~~~l~e   88 (240)
                      +..|.+.+|.|.|.|.-|..+|+.+...    |.       +++.+|+...      ..     ..++...-....++.|
T Consensus        20 g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e   99 (279)
T cd05312          20 GKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLE   99 (279)
T ss_pred             CCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHH
Confidence            4568899999999999999999998776    77       6888887631      11     1111111012358999


Q ss_pred             hcC--cCCEEEEcCCCChhhhhcccHHHHccCC---CCCEEEEcCCCcccCHHHHHHHHH--hCC-ccEEEeeCCCCCCC
Q 026360           89 MLP--KCDIVVVNTPLTEKTRGMFDKDRIAKMK---KGVLIVNNARGAIMDTQAVVDACS--SGH-IAGYSGDVWNPQPA  160 (240)
Q Consensus        89 ll~--~aDiVvl~lp~~~~t~~~i~~~~l~~mk---~gailIN~srg~~vd~~aL~~aL~--~g~-i~ga~lDV~~~EP~  160 (240)
                      +++  +.|+++=+.-    ..++++++.++.|.   +.++|.=.|......|..=.++.+  +|+ |.+.+...-+.+..
T Consensus       100 ~i~~v~ptvlIG~S~----~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~G~ai~ATGsPf~pv~~~  175 (279)
T cd05312         100 VVKAVKPTVLIGLSG----VGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDGRALFASGSPFPPVEYN  175 (279)
T ss_pred             HHHhcCCCEEEEeCC----CCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhcCCEEEEeCCCCCCeeeC
Confidence            999  8898865441    23789999999998   899999999887644444444444  355 54443221111111


Q ss_pred             CCCCCCCCCCCeEEcCCCCCCcHHHH-----HHhhhhHHHHHHHHHHHccC
Q 026360          161 PKDHPWRYMPNQAMTPHVSGTTIDAQ-----VIVHFFPVFMRLFTSFLSHK  206 (240)
Q Consensus       161 ~~~~~l~~~~nv~~TPH~a~~t~~~~-----~~~~~~~~~~~~~~~~~~g~  206 (240)
                      .....--+..|+++-|=++-....+.     ..|..  .+.+-|..+..-+
T Consensus       176 Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~--aAA~aLA~~~~~~  224 (279)
T cd05312         176 GKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFL--AAAEALASLVTDE  224 (279)
T ss_pred             CeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHH--HHHHHHHHhCCcc
Confidence            11122235678999997754333221     23333  4556666665543

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=96.73  E-value=0.0048  Score=57.83  Aligned_cols=113  Identities=19%  Similarity=0.173  Sum_probs=73.8

Q ss_pred             cCCCeEEEEccChHHHH-HHHHhccCCCEEEEEcCCCCCh-hHHHhcCceec-CCHHhhcCcCCEEEEcC--C-CChhhh
Q 026360           34 LEGKTVGTVGCGRIGKL-LLQRLKPFNCNLLYHDRVKMDP-QLEKETGAKFE-EDLDTMLPKCDIVVVNT--P-LTEKTR  107 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~-~A~~l~~~G~~V~~~d~~~~~~-~~~~~~g~~~~-~~l~ell~~aDiVvl~l--p-~~~~t~  107 (240)
                      ..++++.|+|+|..|.+ +|+.|+..|++|.++|...... +...+.|+... ....+.+.++|+|+..-  | ..|...
T Consensus         5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~   84 (461)
T PRK00421          5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV   84 (461)
T ss_pred             CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence            46789999999999999 7999999999999999754321 22334466542 12234567899888763  2 222221


Q ss_pred             -------hcccH-HHHccC-CC-CCEEEEcCCCcccCHHHHHHHHHhCC
Q 026360          108 -------GMFDK-DRIAKM-KK-GVLIVNNARGAIMDTQAVVDACSSGH  146 (240)
Q Consensus       108 -------~~i~~-~~l~~m-k~-gailIN~srg~~vd~~aL~~aL~~g~  146 (240)
                             .++.+ +++..+ ++ ..+-|.-+.|+.=...-+.+.|+...
T Consensus        85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g  133 (461)
T PRK00421         85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG  133 (461)
T ss_pred             HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence                   23433 333333 32 35566666788888888888887654

>PRK11579 putative oxidoreductase; Provisional

Probab=96.72  E-value=0.0048  Score=55.59  Aligned_cols=65  Identities=15%  Similarity=0.201  Sum_probs=45.2

Q ss_pred             CeEEEEccChHHHH-HHHHhcc-CCCEEE-EEcCCCCChhHHHhc-CceecCCHHhhcC--cCCEEEEcCCCC
Q 026360           37 KTVGTVGCGRIGKL-LLQRLKP-FNCNLL-YHDRVKMDPQLEKET-GAKFEEDLDTMLP--KCDIVVVNTPLT  103 (240)
Q Consensus        37 ~~vgIIG~G~iG~~-~A~~l~~-~G~~V~-~~d~~~~~~~~~~~~-g~~~~~~l~ell~--~aDiVvl~lp~~  103 (240)
                      .++||||+|.||+. .+..++. -++++. ++|+++..  ..... +...+++++++++  +.|+|++++|..
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~--~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~   75 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATK--VKADWPTVTVVSEPQHLFNDPNIDLIVIPTPND   75 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHH--HHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcH
Confidence            48999999999985 5665554 378866 46665321  12223 3445679999996  579999999954

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=96.72  E-value=0.011  Score=54.78  Aligned_cols=89  Identities=25%  Similarity=0.298  Sum_probs=62.1

Q ss_pred             ccCCCeEEEEcc----------ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCC
Q 026360           33 DLEGKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        33 ~l~g~~vgIIG~----------G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~  102 (240)
                      .+.|++|+|+|+          ..-...+++.|...|++|.+|||..... ....  .....++++.++++|+|+++++.
T Consensus       310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~-~~~~--~~~~~~~~~~~~~ad~~v~~t~~  386 (411)
T TIGR03026       310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEE-EVKG--LPLIDDLEEALKGADALVILTDH  386 (411)
T ss_pred             cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChh-hhhh--cccCCCHHHHHhCCCEEEEecCC
Confidence            478999999996          4467789999999999999999864222 2222  22246888999999999999974


Q ss_pred             ChhhhhcccHHHHc-cCCCCCEEEEc
Q 026360          103 TEKTRGMFDKDRIA-KMKKGVLIVNN  127 (240)
Q Consensus       103 ~~~t~~~i~~~~l~-~mk~gailIN~  127 (240)
                      . +.+. ++-+.+. .|+ ..+++|.
T Consensus       387 ~-~~~~-~~~~~~~~~~~-~~~v~D~  409 (411)
T TIGR03026       387 D-EFKD-LDLEKIKDLMK-GKVVVDT  409 (411)
T ss_pred             H-HHhc-cCHHHHHHhcC-CCEEEeC
Confidence            3 3333 3333333 354 4577774

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=96.72  E-value=0.0059  Score=54.27  Aligned_cols=89  Identities=19%  Similarity=0.194  Sum_probs=60.5

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCCCChhHHHhcCceec-C----CH---HhhcC--cCCEEEEcCCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-E----DL---DTMLP--KCDIVVVNTPLT  103 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-~----~l---~ell~--~aDiVvl~lp~~  103 (240)
                      .|.+|.|+|.|.+|..+++.++..|.+ |++.++++...+.++++|+..+ .    +.   .++..  ..|+++-+....
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~~  242 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGNT  242 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCCH
Confidence            489999999999999999999999999 9998876655566666675321 1    11   12222  467777766521


Q ss_pred             hhhhhcccHHHHccCCCCCEEEEcC
Q 026360          104 EKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       104 ~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                       .    .....+..++++..++.++
T Consensus       243 -~----~~~~~~~~l~~~G~~v~~g  262 (339)
T cd08239         243 -A----ARRLALEAVRPWGRLVLVG  262 (339)
T ss_pred             -H----HHHHHHHHhhcCCEEEEEc
Confidence             1    1124456677777777766

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK06270 homoserine dehydrogenase; Provisional

Probab=96.70  E-value=0.013  Score=53.02  Aligned_cols=112  Identities=18%  Similarity=0.259  Sum_probs=65.6

Q ss_pred             CeEEEEccChHHHHHHHHhccC----------CCEEE-EEcCCC-------CChhHH----HhcCc-e------ecCCHH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPF----------NCNLL-YHDRVK-------MDPQLE----KETGA-K------FEEDLD   87 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~----------G~~V~-~~d~~~-------~~~~~~----~~~g~-~------~~~~l~   87 (240)
                      .+|||+|+|.||+.+++.+...          +.+|. ++|++.       ...+..    ...+. .      ...+++
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~   82 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL   82 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence            4799999999999999998654          56655 445431       111111    11121 1      123778


Q ss_pred             hhc--CcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcc-cCHHHHHHHHHhCCcc
Q 026360           88 TML--PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI-MDTQAVVDACSSGHIA  148 (240)
Q Consensus        88 ell--~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~-vd~~aL~~aL~~g~i~  148 (240)
                      +++  .+.|+|+.++|....+...-..-....++.|.-+|....+.+ ...++|.++.++.+..
T Consensus        83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~  146 (341)
T PRK06270         83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVR  146 (341)
T ss_pred             HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCE
Confidence            887  468999999985433211111122344566666666544333 2456788887776664

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.69  E-value=0.0083  Score=55.71  Aligned_cols=92  Identities=17%  Similarity=0.108  Sum_probs=59.9

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc--Cceec----CCHH----hhcCcCCEEEEcCCCC
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--GAKFE----EDLD----TMLPKCDIVVVNTPLT  103 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~--g~~~~----~~l~----ell~~aDiVvl~lp~~  103 (240)
                      +..+++.|+|+|.+|+.+++.|...|.+|+++|.++...+...+.  ++...    .+.+    .-++++|.|+++++..
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~  308 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD  308 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence            457899999999999999999999999999999876443333332  33211    1222    2357899999888865


Q ss_pred             hhhhhcccHHHHccCCCCCEEEEc
Q 026360          104 EKTRGMFDKDRIAKMKKGVLIVNN  127 (240)
Q Consensus       104 ~~t~~~i~~~~l~~mk~gailIN~  127 (240)
                      ..+  ++.....+.+.+..+++-+
T Consensus       309 ~~n--~~~~~~~~~~~~~~ii~~~  330 (453)
T PRK09496        309 EAN--ILSSLLAKRLGAKKVIALV  330 (453)
T ss_pred             HHH--HHHHHHHHHhCCCeEEEEE
Confidence            432  3323333445555455443

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.68  E-value=0.0055  Score=57.60  Aligned_cols=115  Identities=17%  Similarity=0.168  Sum_probs=72.9

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCCh-----hHHHhcCceecC-CHHhhcCcCCEEEEcC---C
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-----QLEKETGAKFEE-DLDTMLPKCDIVVVNT---P  101 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~-----~~~~~~g~~~~~-~l~ell~~aDiVvl~l---p  101 (240)
                      +..+.++++.|||.|.+|.++|..|+..|++|+++|......     +..++.|+.... .-.+....+|+|+++.   |
T Consensus        11 ~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~   90 (480)
T PRK01438         11 HSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRP   90 (480)
T ss_pred             ccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCC
Confidence            345789999999999999999999999999999999654211     223345765431 1112445799998876   3


Q ss_pred             CChhh-----hh--cccH-HHH-ccCCC----CCEEEEcCCCcccCHHHHHHHHHhC
Q 026360          102 LTEKT-----RG--MFDK-DRI-AKMKK----GVLIVNNARGAIMDTQAVVDACSSG  145 (240)
Q Consensus       102 ~~~~t-----~~--~i~~-~~l-~~mk~----gailIN~srg~~vd~~aL~~aL~~g  145 (240)
                      .++..     .+  ++.+ +++ ..+.+    ..+-|--+.|+.=...-+...|+..
T Consensus        91 ~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~  147 (480)
T PRK01438         91 DAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAA  147 (480)
T ss_pred             CCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHc
Confidence            33321     11  2222 332 23322    2455666678887777788888763

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=96.68  E-value=0.019  Score=49.72  Aligned_cols=169  Identities=14%  Similarity=0.062  Sum_probs=102.6

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCC-----------EEEEEcCCCC----C--h-hHHHh---c--CceecCCHH
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-----------NLLYHDRVKM----D--P-QLEKE---T--GAKFEEDLD   87 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-----------~V~~~d~~~~----~--~-~~~~~---~--g~~~~~~l~   87 (240)
                      +.+|.+.+|.|.|.|..|..+|+.+...+.           +++.+|+...    .  . +..+.   +  .-....++.
T Consensus        20 g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~   99 (254)
T cd00762          20 KKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANPERESGDLE   99 (254)
T ss_pred             CCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHH
Confidence            456889999999999999999999887654           5888887631    0  0 11111   1  111235899


Q ss_pred             hhcC--cCCEEEEcCCCChhhhhcccHHHHccCC---CCCEEEEcCCCcccCHHHHHHHHHh--C-CccEEEeeCCCCCC
Q 026360           88 TMLP--KCDIVVVNTPLTEKTRGMFDKDRIAKMK---KGVLIVNNARGAIMDTQAVVDACSS--G-HIAGYSGDVWNPQP  159 (240)
Q Consensus        88 ell~--~aDiVvl~lp~~~~t~~~i~~~~l~~mk---~gailIN~srg~~vd~~aL~~aL~~--g-~i~ga~lDV~~~EP  159 (240)
                      |+++  +.|+++=..-    ..+.+.++.++.|.   +.++|.=.|......|-.=.++.+-  | .|.+-+.--++.+-
T Consensus       100 eav~~~kptvlIG~S~----~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~  175 (254)
T cd00762         100 DAVEAAKPDFLIGVSR----VGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGSPFHPVEL  175 (254)
T ss_pred             HHHHhhCCCEEEEeCC----CCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEECCCCCCccc
Confidence            9999  8998865431    24789999999998   8999999998877444444444443  3 34433332222111


Q ss_pred             CCCCCCCCCCCCeEEcCCCCCCcHHHH-----HHhhhhHHHHHHHHHHHcc
Q 026360          160 APKDHPWRYMPNQAMTPHVSGTTIDAQ-----VIVHFFPVFMRLFTSFLSH  205 (240)
Q Consensus       160 ~~~~~~l~~~~nv~~TPH~a~~t~~~~-----~~~~~~~~~~~~~~~~~~g  205 (240)
                      .......-+..|+++-|=++-....++     ..|..  .+.+-|..+..-
T Consensus       176 ~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~--aAA~aLA~~v~~  224 (254)
T cd00762         176 NGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFL--SAAEAIASSVTE  224 (254)
T ss_pred             CCceeecccccceeeccchhhhhHhhcCeECCHHHHH--HHHHHHHhhCCh
Confidence            111122236678999997754333322     22333  445556555543

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=96.67  E-value=0.0075  Score=54.54  Aligned_cols=94  Identities=21%  Similarity=0.303  Sum_probs=56.1

Q ss_pred             CeEEEEcc-ChHHHHHHHHhccC-CCEEEE-EcCCCCChhHHHhcC-ce-----ecCCHHh-hcCcCCEEEEcCCCChhh
Q 026360           37 KTVGTVGC-GRIGKLLLQRLKPF-NCNLLY-HDRVKMDPQLEKETG-AK-----FEEDLDT-MLPKCDIVVVNTPLTEKT  106 (240)
Q Consensus        37 ~~vgIIG~-G~iG~~~A~~l~~~-G~~V~~-~d~~~~~~~~~~~~g-~~-----~~~~l~e-ll~~aDiVvl~lp~~~~t  106 (240)
                      ++|+|+|. |.+|+.+++.+... ++++.. .++...........+ ..     .+.++++ ...++|+|++|+|.... 
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~-   81 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVS-   81 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHH-
Confidence            68999997 99999999999876 677655 453322111111111 10     1223332 45789999999994322 


Q ss_pred             hhcccHHHHccCCCCCEEEEcCCCcccCH
Q 026360          107 RGMFDKDRIAKMKKGVLIVNNARGAIMDT  135 (240)
Q Consensus       107 ~~~i~~~~l~~mk~gailIN~srg~~vd~  135 (240)
                      ..++ .+   .++.|..+||.|..--.+.
T Consensus        82 ~~~v-~~---a~~aG~~VID~S~~fR~~~  106 (343)
T PRK00436         82 MDLA-PQ---LLEAGVKVIDLSADFRLKD  106 (343)
T ss_pred             HHHH-HH---HHhCCCEEEECCcccCCCC
Confidence            2221 11   2356899999996554543

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=96.65  E-value=0.003  Score=51.01  Aligned_cols=63  Identities=16%  Similarity=0.211  Sum_probs=47.4

Q ss_pred             EEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCcCCEEEEcCCCC
Q 026360           39 VGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTPLT  103 (240)
Q Consensus        39 vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~ell~~aDiVvl~lp~~  103 (240)
                      |.|+|. |.+|+.+++.|...|++|+++.|++.+.+.  ..+++.       .+++.+.++.+|.|+.+++.+
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~   71 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPP   71 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHST
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhhh
Confidence            678995 999999999999999999999997644333  233321       124457788999999998743

...

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=96.64  E-value=0.0039  Score=56.85  Aligned_cols=62  Identities=21%  Similarity=0.453  Sum_probs=44.7

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCcee---cC---CHHhhcCcCCEEEE
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF---EE---DLDTMLPKCDIVVV   98 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~---~~---~l~ell~~aDiVvl   98 (240)
                      .++|||||-|..|+.++..++.+|++|+++|+++..+.... .....   ..   .+.++++.+|+|+.
T Consensus         2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~-ad~~~~~~~~D~~~l~~~a~~~dvit~   69 (372)
T PRK06019          2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQV-ADEVIVADYDDVAALRELAEQCDVITY   69 (372)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHh-CceEEecCCCCHHHHHHHHhcCCEEEe
Confidence            47899999999999999999999999999998654322111 11111   12   35667888998764

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.63  E-value=0.0074  Score=55.16  Aligned_cols=88  Identities=24%  Similarity=0.416  Sum_probs=61.2

Q ss_pred             cCCCeEEEEccC----------hHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-cCceecCCHHhhcCcCCEEEEcCCC
Q 026360           34 LEGKTVGTVGCG----------RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAKFEEDLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        34 l~g~~vgIIG~G----------~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-~g~~~~~~l~ell~~aDiVvl~lp~  102 (240)
                      |.||+|||.|+-          .-...++..|+..|.+|.+|||... ...... .++....+++++++.||+++++.. 
T Consensus       308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~-~~~~~~~~~~~~~~~~~~~~~~aDaivi~te-  385 (414)
T COG1004         308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAM-ENAFRNFPDVELESDAEEALKGADAIVINTE-  385 (414)
T ss_pred             CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhh-HHHHhcCCCceEeCCHHHHHhhCCEEEEecc-
Confidence            899999999962          4567789999999999999998532 222221 136778899999999999999875 


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEE
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVN  126 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN  126 (240)
                      .++-+.+ +-+.+ .||. .++++
T Consensus       386 w~ef~~~-d~~~~-~m~~-~~v~D  406 (414)
T COG1004         386 WDEFRDL-DFEKL-LMKT-PVVID  406 (414)
T ss_pred             HHHHhcc-Chhhh-hccC-CEEEe
Confidence            2333332 33333 4553 44554

>PTZ00325 malate dehydrogenase; Provisional

Probab=96.63  E-value=0.012  Score=52.76  Aligned_cols=69  Identities=22%  Similarity=0.149  Sum_probs=46.2

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccC--CCEEEEEcCCCCChhHHH------hcCceecC---CHHhhcCcCCEEEEcC
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPF--NCNLLYHDRVKMDPQLEK------ETGAKFEE---DLDTMLPKCDIVVVNT  100 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~--G~~V~~~d~~~~~~~~~~------~~g~~~~~---~l~ell~~aDiVvl~l  100 (240)
                      -++.+||+|||. |.||..+|..+...  ..++..+|......+..+      ...+....   +..+.++++|+|++++
T Consensus         5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVita   84 (321)
T PTZ00325          5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICA   84 (321)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECC
Confidence            357789999999 99999999998844  457999998322211111      01122221   2257899999999886


Q ss_pred             C
Q 026360          101 P  101 (240)
Q Consensus       101 p  101 (240)
                      -
T Consensus        85 G   85 (321)
T PTZ00325         85 G   85 (321)
T ss_pred             C
Confidence            4

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=96.60  E-value=0.014  Score=52.95  Aligned_cols=111  Identities=14%  Similarity=0.135  Sum_probs=70.6

Q ss_pred             CCeEEEEccChHHHHHHHHhccC--CCEEE-EEcCCCCCh-hHHHhcCceecCCHHhhcCcCCEEEEcCCCC-h-hhhhc
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPF--NCNLL-YHDRVKMDP-QLEKETGAKFEEDLDTMLPKCDIVVVNTPLT-E-KTRGM  109 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~--G~~V~-~~d~~~~~~-~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~-~-~t~~~  109 (240)
                      -.+|||||. .+|+..+..++..  +.++. ++|+++... +.++.+|+..++++++++++.|++++++|.+ + .+..-
T Consensus         3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e   81 (343)
T TIGR01761         3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSA   81 (343)
T ss_pred             CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHH
Confidence            368999999 6899999888765  47755 567765433 3455678776789999999999999998742 2 22222


Q ss_pred             ccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEE
Q 026360          110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY  150 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga  150 (240)
                      +.   .+.++.|.-++.=---..-+.++|+++.++.++...
T Consensus        82 ~a---~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~  119 (343)
T TIGR01761        82 LA---RALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL  119 (343)
T ss_pred             HH---HHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence            22   223344432322111123566778888888777644

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>TIGR03316 ygeW probable carbamoyltransferase YgeW

Probab=96.59  E-value=0.016  Score=52.66  Aligned_cols=68  Identities=16%  Similarity=0.281  Sum_probs=50.4

Q ss_pred             ccCCCeEEEEccC--------hHHHHHHHHhccCCCEEEEEcCCCC--ChhH-------HHhcCc--eecCCHHhhcCcC
Q 026360           33 DLEGKTVGTVGCG--------RIGKLLLQRLKPFNCNLLYHDRVKM--DPQL-------EKETGA--KFEEDLDTMLPKC   93 (240)
Q Consensus        33 ~l~g~~vgIIG~G--------~iG~~~A~~l~~~G~~V~~~d~~~~--~~~~-------~~~~g~--~~~~~l~ell~~a   93 (240)
                      .|+|++|+|+|.|        ++.++++..+..+|++|.+..|...  ..+.       +++.|.  ...+++++.++++
T Consensus       167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a  246 (357)
T TIGR03316       167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA  246 (357)
T ss_pred             ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence            3789999999743        5668888899999999999987632  2221       123343  4568999999999


Q ss_pred             CEEEEcC
Q 026360           94 DIVVVNT  100 (240)
Q Consensus        94 DiVvl~l  100 (240)
                      |+|..-.
T Consensus       247 Dvvyt~~  253 (357)
T TIGR03316       247 DIVYPKS  253 (357)
T ss_pred             CEEEECC
Confidence            9998863

Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=96.59  E-value=0.0044  Score=48.70  Aligned_cols=85  Identities=15%  Similarity=0.237  Sum_probs=49.5

Q ss_pred             EEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccC
Q 026360           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKM  118 (240)
Q Consensus        39 vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~m  118 (240)
                      +-|+|.|.+|+++++.++..|++|+++|+++..                  +..++-+ .+.+.    ....  +.+ .+
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~------------------~~~~~~~-~~~~~----~~~~--~~~-~~   54 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPER------------------FPEADEV-ICIPP----DDIL--EDL-EI   54 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC-------------------TTSSEE-ECSHH----HHHH--HHC--S
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccc------------------cCCCCcc-EecCh----HHHH--hcc-CC
Confidence            468999999999999999999999999986421                  1233332 22221    1110  111 35


Q ss_pred             CCCCEEEEcCCCcccCHHHHHHHHHhCCccEEE
Q 026360          119 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS  151 (240)
Q Consensus       119 k~gailIN~srg~~vd~~aL~~aL~~g~i~ga~  151 (240)
                      .+++.+| ++++.-.|.+.|.++|++ ...+.+
T Consensus        55 ~~~t~Vv-~th~h~~D~~~L~~~l~~-~~~YiG   85 (136)
T PF13478_consen   55 DPNTAVV-MTHDHELDAEALEAALAS-PARYIG   85 (136)
T ss_dssp             -TT-EEE---S-CCCHHHHHHHHTTS-S-SEEE
T ss_pred             CCCeEEE-EcCCchhHHHHHHHHHcC-CCCEEE
Confidence            5666665 788888888888888876 344343

>PRK10637 cysG siroheme synthase; Provisional

Probab=96.57  E-value=0.0073  Score=56.74  Aligned_cols=92  Identities=12%  Similarity=0.110  Sum_probs=60.5

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCCh-hHHHhcC-ceec--CCHHhhcCcCCEEEEcCCCChhhh
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLEKETG-AKFE--EDLDTMLPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~~g-~~~~--~~l~ell~~aDiVvl~lp~~~~t~  107 (240)
                      .+|+|++|.|||-|.+|..=++.|..+|++|+++.+...+. ......| +...  .-.++.++.+++|+.++.+.+   
T Consensus         8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~---   84 (457)
T PRK10637          8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDA---   84 (457)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHH---
Confidence            47999999999999999998999999999999998753211 1111111 2211  112355788998888876433   


Q ss_pred             hcccHHHHccCCCCCEEEEcC
Q 026360          108 GMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~s  128 (240)
                        +|.+.....+...+++|++
T Consensus        85 --~n~~i~~~a~~~~~lvN~~  103 (457)
T PRK10637         85 --VNQRVSEAAEARRIFCNVV  103 (457)
T ss_pred             --HhHHHHHHHHHcCcEEEEC
Confidence              3444444455555677764

>PRK10206 putative oxidoreductase; Provisional

Probab=96.57  E-value=0.0048  Score=55.73  Aligned_cols=66  Identities=20%  Similarity=0.215  Sum_probs=45.1

Q ss_pred             eEEEEccChHHHH-HHHHh-cc-CCCEEE-EEcCCCCChhHHHhcC-ceecCCHHhhcC--cCCEEEEcCCCC
Q 026360           38 TVGTVGCGRIGKL-LLQRL-KP-FNCNLL-YHDRVKMDPQLEKETG-AKFEEDLDTMLP--KCDIVVVNTPLT  103 (240)
Q Consensus        38 ~vgIIG~G~iG~~-~A~~l-~~-~G~~V~-~~d~~~~~~~~~~~~g-~~~~~~l~ell~--~aDiVvl~lp~~  103 (240)
                      ++||||+|.+++. .+..+ .. -+++|. ++|+++...+.....+ ...+++++++++  +.|+|++++|..
T Consensus         3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~   75 (344)
T PRK10206          3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHAD   75 (344)
T ss_pred             EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCch
Confidence            7999999998753 34444 32 367765 5787654333344444 455678999996  579999999954

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.56  E-value=0.027  Score=49.77  Aligned_cols=105  Identities=14%  Similarity=0.195  Sum_probs=75.9

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhh---------
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKT---------  106 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t---------  106 (240)
                      |++++|||--.--..+++.|...|++|..+.-...... +  .|+....+.++.++++|+|++-+|.+...         
T Consensus         1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~-~--~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~   77 (287)
T TIGR02853         1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDG-F--TGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSN   77 (287)
T ss_pred             CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccccc-c--ccceeecchhhhhccCCEEEECCccccCCceEeccccc
Confidence            68999999988888999999999999888764221111 1  15666656677799999999999965542         


Q ss_pred             -hhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360          107 -RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       107 -~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                       +-.++++.++.++++++ +-+|    ++..++-++.++..+.
T Consensus        78 ~~~~l~~~~l~~~~~~~~-~~~G----~~~~~l~~~a~~~gi~  115 (287)
T TIGR02853        78 EKVVLTPELLESTKGHCT-IYVG----ISNPYLEQLAADAGVK  115 (287)
T ss_pred             CCccccHHHHHhcCCCCE-EEEe----cCCHHHHHHHHHCCCe
Confidence             22256889999998664 3444    4556666677877776

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=96.55  E-value=0.007  Score=53.47  Aligned_cols=87  Identities=13%  Similarity=0.016  Sum_probs=56.6

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHH
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  113 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~  113 (240)
                      .|+++.|+|.|.+|...++.++.+|++ |.+.++++...+.+....+  .+.-++.-...|+|+-++... .   . ...
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~--i~~~~~~~~g~Dvvid~~G~~-~---~-~~~  216 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEV--LDPEKDPRRDYRAIYDASGDP-S---L-IDT  216 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccc--cChhhccCCCCCEEEECCCCH-H---H-HHH
Confidence            578899999999999999999999998 5556664433322322221  211111223578888887621 1   1 235


Q ss_pred             HHccCCCCCEEEEcC
Q 026360          114 RIAKMKKGVLIVNNA  128 (240)
Q Consensus       114 ~l~~mk~gailIN~s  128 (240)
                      .++.++++..++.+|
T Consensus       217 ~~~~l~~~G~iv~~G  231 (308)
T TIGR01202       217 LVRRLAKGGEIVLAG  231 (308)
T ss_pred             HHHhhhcCcEEEEEe
Confidence            677789998888876

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=96.55  E-value=0.0026  Score=48.15  Aligned_cols=100  Identities=22%  Similarity=0.331  Sum_probs=59.1

Q ss_pred             ccChHHHHHHHHhccC----CCEEE-EEcCC--CCChhHHHhcCceecCCHHhhcC--cCCEEEEcCCCChhhhhcccHH
Q 026360           43 GCGRIGKLLLQRLKPF----NCNLL-YHDRV--KMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMFDKD  113 (240)
Q Consensus        43 G~G~iG~~~A~~l~~~----G~~V~-~~d~~--~~~~~~~~~~g~~~~~~l~ell~--~aDiVvl~lp~~~~t~~~i~~~  113 (240)
                      |+|.||+.+++.+...    +++|. +++++  ..........+.....+++++++  ..|+|+=|.+. +...    .-
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~-~~~~----~~   75 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSS-EAVA----EY   75 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSC-HHHH----HH
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCc-hHHH----HH
Confidence            8999999999999865    57755 45665  11111111223345579999998  89999999663 2222    22


Q ss_pred             HHccCCCCCEEEEcCCCccc---CHHHHHHHHHhCCc
Q 026360          114 RIAKMKKGVLIVNNARGAIM---DTQAVVDACSSGHI  147 (240)
Q Consensus       114 ~l~~mk~gailIN~srg~~v---d~~aL~~aL~~g~i  147 (240)
                      ..+.++.|.-+|..+.+.+.   .-+.|.++.++++.
T Consensus        76 ~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~  112 (117)
T PF03447_consen   76 YEKALERGKHVVTANKGALADEALYEELREAARKNGV  112 (117)
T ss_dssp             HHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCC
Confidence            34456788889999988887   33344455554443

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PRK08192 aspartate carbamoyltransferase; Provisional

Probab=96.54  E-value=0.017  Score=52.26  Aligned_cols=67  Identities=21%  Similarity=0.294  Sum_probs=50.4

Q ss_pred             ccCCCeEEEEcc---ChHHHHHHHHhc-cCCCEEEEEcCCCC--ChhH---HHhcC--ceecCCHHhhcCcCCEEEEc
Q 026360           33 DLEGKTVGTVGC---GRIGKLLLQRLK-PFNCNLLYHDRVKM--DPQL---EKETG--AKFEEDLDTMLPKCDIVVVN   99 (240)
Q Consensus        33 ~l~g~~vgIIG~---G~iG~~~A~~l~-~~G~~V~~~d~~~~--~~~~---~~~~g--~~~~~~l~ell~~aDiVvl~   99 (240)
                      .+.|++|+++|=   +++.++++..+. .+|++|.+..|...  +.+.   +...|  +...+++++.++++|+|...
T Consensus       156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~  233 (338)
T PRK08192        156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLT  233 (338)
T ss_pred             CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEc
Confidence            589999999996   689999998766 45999999987542  2121   12334  44567999999999999884

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=96.54  E-value=0.0054  Score=54.59  Aligned_cols=68  Identities=26%  Similarity=0.341  Sum_probs=49.6

Q ss_pred             CCeEEEEccChHHH-HHHHHhccCC--CE-EEEEcCCCCCh-hHHHhcCce-ecCCHHhhcCc--CCEEEEcCCCC
Q 026360           36 GKTVGTVGCGRIGK-LLLQRLKPFN--CN-LLYHDRVKMDP-QLEKETGAK-FEEDLDTMLPK--CDIVVVNTPLT  103 (240)
Q Consensus        36 g~~vgIIG~G~iG~-~~A~~l~~~G--~~-V~~~d~~~~~~-~~~~~~g~~-~~~~l~ell~~--aDiVvl~lp~~  103 (240)
                      -.++||||+|.++. ..+..+...+  +. |.++|+++... ..+..+++. .+++++++++.  .|+|++++|..
T Consensus         3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~   78 (342)
T COG0673           3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNA   78 (342)
T ss_pred             eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCCh
Confidence            35899999997765 5777777765  35 55668876443 345567774 66799999987  58999999954

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=96.53  E-value=0.01  Score=52.68  Aligned_cols=90  Identities=17%  Similarity=0.189  Sum_probs=56.3

Q ss_pred             EEEEccChHHHHHHHHhccCC--CEEEEEcCCCCChhH-HHhc-------C---ceecCCHHhhcCcCCEEEEcCCCChh
Q 026360           39 VGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQL-EKET-------G---AKFEEDLDTMLPKCDIVVVNTPLTEK  105 (240)
Q Consensus        39 vgIIG~G~iG~~~A~~l~~~G--~~V~~~d~~~~~~~~-~~~~-------g---~~~~~~l~ell~~aDiVvl~lp~~~~  105 (240)
                      |+|||.|.+|..+|..+...|  .++..+|++...... ..++       .   +....+ .+.+++||+|+++......
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~~   79 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPRK   79 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCCC
Confidence            589999999999999998877  579999986532211 1110       0   111233 4578999999999753211


Q ss_pred             ---h--------hhccc--HHHHccCCCCCEEEEcCC
Q 026360          106 ---T--------RGMFD--KDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       106 ---t--------~~~i~--~~~l~~mk~gailIN~sr  129 (240)
                         +        ..++.  .+.+....|++++++++-
T Consensus        80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN  116 (300)
T cd00300          80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN  116 (300)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence               1        11111  122333458899999983

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated

Probab=96.53  E-value=0.024  Score=52.26  Aligned_cols=67  Identities=16%  Similarity=0.320  Sum_probs=51.3

Q ss_pred             cCCCeEEEEcc-----C---hHHHHHHHHhccCCCEEEEEcCCCC--ChhH-------HHhcC--ceecCCHHhhcCcCC
Q 026360           34 LEGKTVGTVGC-----G---RIGKLLLQRLKPFNCNLLYHDRVKM--DPQL-------EKETG--AKFEEDLDTMLPKCD   94 (240)
Q Consensus        34 l~g~~vgIIG~-----G---~iG~~~A~~l~~~G~~V~~~d~~~~--~~~~-------~~~~g--~~~~~~l~ell~~aD   94 (240)
                      +.|++|+|+|-     |   ++.++++..+..+|++|.+..|..-  .++.       ++..|  +...+++++.++++|
T Consensus       185 l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~aD  264 (395)
T PRK07200        185 LKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDAD  264 (395)
T ss_pred             cCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCC
Confidence            78899999985     5   6779999999999999999998632  2221       22234  445679999999999


Q ss_pred             EEEEcC
Q 026360           95 IVVVNT  100 (240)
Q Consensus        95 iVvl~l  100 (240)
                      +|..-.
T Consensus       265 vVYtd~  270 (395)
T PRK07200        265 IVYPKS  270 (395)
T ss_pred             EEEEcC
Confidence            998863

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=96.52  E-value=0.009  Score=53.90  Aligned_cols=89  Identities=13%  Similarity=0.162  Sum_probs=59.3

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHH-HhcCceec---CC---HHhhcCcCCEEEEcCCCChhhh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETGAKFE---ED---LDTMLPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~-~~~g~~~~---~~---l~ell~~aDiVvl~lp~~~~t~  107 (240)
                      .|.++.|.|.|.+|..+++.++..|.+|++.+.+......+ +.+|+...   .+   +.+.....|+++-+++...   
T Consensus       180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~---  256 (357)
T PLN02514        180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFH---  256 (357)
T ss_pred             CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchH---
Confidence            68899999999999999999999999988887654333222 34665321   11   2223334688887775221   


Q ss_pred             hcccHHHHccCCCCCEEEEcC
Q 026360          108 GMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~s  128 (240)
                        .....++.++++..++.++
T Consensus       257 --~~~~~~~~l~~~G~iv~~G  275 (357)
T PLN02514        257 --PLEPYLSLLKLDGKLILMG  275 (357)
T ss_pred             --HHHHHHHHhccCCEEEEEC
Confidence              1234566778888888876

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.50  E-value=0.0073  Score=51.95  Aligned_cols=92  Identities=23%  Similarity=0.212  Sum_probs=59.7

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChh-----------------------HHHhc--Cc--ee-
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-----------------------LEKET--GA--KF-   82 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~-----------------------~~~~~--g~--~~-   82 (240)
                      ..|++++|.|+|+|.+|..+|+.|...|. +++++|.+.....                       ...+.  .+  .. 
T Consensus        20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~   99 (240)
T TIGR02355        20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPI   99 (240)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence            46899999999999999999999999887 5778876532110                       00111  11  11 


Q ss_pred             ---c--CCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEc
Q 026360           83 ---E--EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNN  127 (240)
Q Consensus        83 ---~--~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~  127 (240)
                         .  .+.+++++++|+|+.++- +.+++..+++...+.   +..+|..
T Consensus       100 ~~~i~~~~~~~~~~~~DlVvd~~D-~~~~r~~ln~~~~~~---~ip~v~~  145 (240)
T TIGR02355       100 NAKLDDAELAALIAEHDIVVDCTD-NVEVRNQLNRQCFAA---KVPLVSG  145 (240)
T ss_pred             eccCCHHHHHHHhhcCCEEEEcCC-CHHHHHHHHHHHHHc---CCCEEEE
Confidence               1  234567888998888774 566777776554433   3335543

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=96.50  E-value=0.0094  Score=50.73  Aligned_cols=92  Identities=11%  Similarity=0.092  Sum_probs=58.6

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCCh--hHHHhcCceec-CCH-HhhcCcCCEEEEcCCCChhhh
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKETGAKFE-EDL-DTMLPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~--~~~~~~g~~~~-~~l-~ell~~aDiVvl~lp~~~~t~  107 (240)
                      .+++|++|.|||.|.+|..=++.|..+|++|+++++...+.  .....-.++.. .+. .+.++.+++|+.++... +  
T Consensus        21 l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~-~--   97 (223)
T PRK05562         21 LLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDE-K--   97 (223)
T ss_pred             EECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCH-H--
Confidence            46789999999999999998999999999999999864221  11111112211 011 23467899998888632 2  


Q ss_pred             hcccHHHHccCCCCCEEEEcC
Q 026360          108 GMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~s  128 (240)
                        +|.......+.-.+++|++
T Consensus        98 --vN~~I~~~a~~~~~lvn~v  116 (223)
T PRK05562         98 --LNNKIRKHCDRLYKLYIDC  116 (223)
T ss_pred             --HHHHHHHHHHHcCCeEEEc
Confidence              3444444445445566653

>PRK06349 homoserine dehydrogenase; Provisional

Probab=96.47  E-value=0.013  Score=54.54  Aligned_cols=108  Identities=17%  Similarity=0.197  Sum_probs=63.2

Q ss_pred             CeEEEEccChHHHHHHHHhccC----------CCEEE-EEcCCCCChhHHHhcCceecCCHHhhcC--cCCEEEEcCCCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPF----------NCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLT  103 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~----------G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDiVvl~lp~~  103 (240)
                      .+|||+|+|.||+.+++.+...          +.+|. +++++..........+....+++++++.  +.|+|+.+++..
T Consensus         4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~   83 (426)
T PRK06349          4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI   83 (426)
T ss_pred             EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence            5799999999999998877432          34544 4566543222111122344568999985  479999888643


Q ss_pred             hhhhhcccHHHHccCCCCCEEEEcCCCccc-CHHHHHHHHHhCCcc
Q 026360          104 EKTRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIA  148 (240)
Q Consensus       104 ~~t~~~i~~~~l~~mk~gailIN~srg~~v-d~~aL~~aL~~g~i~  148 (240)
                      ......    ..+.++.|.-+|...-+... .-+.|.++.++.+..
T Consensus        84 ~~~~~~----~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~  125 (426)
T PRK06349         84 EPAREL----ILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVD  125 (426)
T ss_pred             hHHHHH----HHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCc
Confidence            221111    22345566555544332222 336677777776664

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=96.46  E-value=0.008  Score=53.93  Aligned_cols=46  Identities=24%  Similarity=0.348  Sum_probs=39.3

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      .|.+|.|.|.|.+|..+++.++..|.+|++.++++...+.++++|+
T Consensus       166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga  211 (349)
T TIGR03201       166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGA  211 (349)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCC
Confidence            4889999999999999999999999999999887655666666665

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=96.46  E-value=0.013  Score=52.17  Aligned_cols=89  Identities=19%  Similarity=0.213  Sum_probs=60.7

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCC------HHhhcCcCCEEEEcCCCChhhhh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEED------LDTMLPKCDIVVVNTPLTEKTRG  108 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~------l~ell~~aDiVvl~lp~~~~t~~  108 (240)
                      .|.++.|.|.|.+|+.+++.++++|.+|++.+++....+.+.++|+..+-+      .++.-...|+++-+.+..     
T Consensus       169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~-----  243 (337)
T cd05283         169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSAS-----  243 (337)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCc-----
Confidence            478999999999999999999999999999988765555555566432111      112234567777776622     


Q ss_pred             cccHHHHccCCCCCEEEEcC
Q 026360          109 MFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       109 ~i~~~~l~~mk~gailIN~s  128 (240)
                      ....+.++.++++..+++++
T Consensus       244 ~~~~~~~~~l~~~G~~v~~g  263 (337)
T cd05283         244 HDLDPYLSLLKPGGTLVLVG  263 (337)
T ss_pred             chHHHHHHHhcCCCEEEEEe
Confidence            11234566677777777775

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.45  E-value=0.0043  Score=55.12  Aligned_cols=53  Identities=23%  Similarity=0.163  Sum_probs=45.6

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceecCCHH
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEEDLD   87 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~~l~   87 (240)
                      .|.+++|.|+|.+|.++++.+++.|+ +++++|.++.+-+.++++|+..+-+..
T Consensus       192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~  245 (375)
T KOG0022|consen  192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPK  245 (375)
T ss_pred             CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChh
Confidence            58999999999999999999999998 599999988777788888886543444

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=96.43  E-value=0.01  Score=48.95  Aligned_cols=65  Identities=14%  Similarity=0.089  Sum_probs=48.0

Q ss_pred             CeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-----cCceecCCHHhhcCcCCEEEEcCC
Q 026360           37 KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----TGAKFEEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        37 ~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-----~g~~~~~~l~ell~~aDiVvl~lp  101 (240)
                      +||+|||. |.+|+.+++-++..|++|+++-|++.+....+.     ..+...+++.+.+..-|+|+.+..
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~   71 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFG   71 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEecc
Confidence            68999995 999999999999999999999987644332111     122222344578889999998864

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=96.40  E-value=0.013  Score=51.45  Aligned_cols=65  Identities=22%  Similarity=0.200  Sum_probs=45.8

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHH-HhcCceecCCHHhhcCcCCEEEEcCCC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLE-KETGAKFEEDLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~-~~~g~~~~~~l~ell~~aDiVvl~lp~  102 (240)
                      ++++.|+|.|..+++++..|...|+ +|++++|+..+.+.. ...+.....++  ....+|+||.++|.
T Consensus       122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~--~~~~~dlvINaTp~  188 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDL--GGIEADILVNVTPI  188 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhc--ccccCCEEEECCcc
Confidence            5789999999999999999999998 499999976433322 22332211111  12458999999984

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.38  E-value=0.0031  Score=57.64  Aligned_cols=63  Identities=22%  Similarity=0.335  Sum_probs=43.4

Q ss_pred             EEEEccChHHHHHHHHhccCC-C-EEEEEcCCCCChhHHHh----cCcee-------cCCHHhhcCcCCEEEEcCC
Q 026360           39 VGTVGCGRIGKLLLQRLKPFN-C-NLLYHDRVKMDPQLEKE----TGAKF-------EEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        39 vgIIG~G~iG~~~A~~l~~~G-~-~V~~~d~~~~~~~~~~~----~g~~~-------~~~l~ell~~aDiVvl~lp  101 (240)
                      |+|+|.|.+|+.+++.|...+ . +|++.|++....+....    ..+..       ..+++++++++|+|+.|+|
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~g   76 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAG   76 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SS
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCc
Confidence            689999999999999998775 4 79999997644333221    11211       1236788999999999997

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=96.37  E-value=0.012  Score=53.35  Aligned_cols=89  Identities=24%  Similarity=0.292  Sum_probs=64.5

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHh-cCceecCCH-H--------hhc--CcCCEEEEcCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKE-TGAKFEEDL-D--------TML--PKCDIVVVNTP  101 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~-~g~~~~~~l-~--------ell--~~aDiVvl~lp  101 (240)
                      .+.++.|+|.|.||...+..++.+|. +|++.|+++.+.+.+++ .+.....+. +        ++.  ..+|+++-|+.
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G  247 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG  247 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence            34499999999999999999999997 47788988777777777 454432221 1        222  34899999987


Q ss_pred             CChhhhhcccHHHHccCCCCCEEEEcC
Q 026360          102 LTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       102 ~~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                       ++.    .-.+.++..+++..++.+|
T Consensus       248 -~~~----~~~~ai~~~r~gG~v~~vG  269 (350)
T COG1063         248 -SPP----ALDQALEALRPGGTVVVVG  269 (350)
T ss_pred             -CHH----HHHHHHHHhcCCCEEEEEe
Confidence             222    1235677789999998887

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=96.36  E-value=0.0098  Score=53.85  Aligned_cols=89  Identities=17%  Similarity=0.169  Sum_probs=60.7

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceec-C----CH-Hh---hcC-cCCEEEEcCCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-E----DL-DT---MLP-KCDIVVVNTPLT  103 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-~----~l-~e---ll~-~aDiVvl~lp~~  103 (240)
                      .|.+|.|.|.|.+|..+++.++..|+ +|++.++++.+.+.++++|+..+ .    ++ ++   +.. ..|+++-++...
T Consensus       191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~  270 (371)
T cd08281         191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGSV  270 (371)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCCh
Confidence            48899999999999999999999999 59888887666666777776321 1    11 11   111 368887776422


Q ss_pred             hhhhhcccHHHHccCCCCCEEEEcC
Q 026360          104 EKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       104 ~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      +.     ....++.++++..++.++
T Consensus       271 ~~-----~~~~~~~l~~~G~iv~~G  290 (371)
T cd08281         271 PA-----LETAYEITRRGGTTVTAG  290 (371)
T ss_pred             HH-----HHHHHHHHhcCCEEEEEc
Confidence            11     123456677877777775

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=96.36  E-value=0.0071  Score=50.42  Aligned_cols=38  Identities=16%  Similarity=0.128  Sum_probs=34.0

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCC
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVK   69 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~   69 (240)
                      ..|.+++|.|+|+|.+|..+++.|...|.. +..+|...
T Consensus        17 ~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~   55 (197)
T cd01492          17 KRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT   55 (197)
T ss_pred             HHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            468999999999999999999999999985 88898653

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=96.35  E-value=0.039  Score=51.71  Aligned_cols=110  Identities=13%  Similarity=0.114  Sum_probs=74.5

Q ss_pred             cCCCeEEEEcc----ChHHHHHHHHhccCCC--EEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhh
Q 026360           34 LEGKTVGTVGC----GRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        34 l~g~~vgIIG~----G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~  107 (240)
                      ++-++|+|||.    |++|..+.+.++..|+  +|+.+++...     .-.|+..+.+++++-...|++++++|. +.+.
T Consensus         5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~-----~i~G~~~~~sl~~lp~~~Dlavi~vp~-~~~~   78 (447)
T TIGR02717         5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAG-----EILGVKAYPSVLEIPDPVDLAVIVVPA-KYVP   78 (447)
T ss_pred             cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCC-----ccCCccccCCHHHCCCCCCEEEEecCH-HHHH
Confidence            56789999998    8899999999999887  6888887532     124677777899988889999999993 2233


Q ss_pred             hcccHHHHccCCCCCEEE-EcCCCc-----ccCHHHHHHHHHhCCccEEE
Q 026360          108 GMFDKDRIAKMKKGVLIV-NNARGA-----IMDTQAVVDACSSGHIAGYS  151 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailI-N~srg~-----~vd~~aL~~aL~~g~i~ga~  151 (240)
                      ..+. +..+ .+..+++| .-+-++     .-.++++.+..+++.+.-.+
T Consensus        79 ~~l~-e~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlG  126 (447)
T TIGR02717        79 QVVE-ECGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLG  126 (447)
T ss_pred             HHHH-HHHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEe
Confidence            3332 3332 34444443 322222     22357888888888777443

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.35  E-value=0.016  Score=47.26  Aligned_cols=78  Identities=24%  Similarity=0.336  Sum_probs=51.1

Q ss_pred             eEEEEccChHHHHHHHHhccCCCE-EEEEcCCCCC------------------hh----HHHhc--Ccee--------cC
Q 026360           38 TVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMD------------------PQ----LEKET--GAKF--------EE   84 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~~~------------------~~----~~~~~--g~~~--------~~   84 (240)
                      +|+|+|+|.+|..+++.|...|.. +..+|.+...                  .+    ...+.  .++.        ..
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~~   80 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDEN   80 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecChh
Confidence            589999999999999999999984 8888875311                  00    01111  1111        12


Q ss_pred             CHHhhcCcCCEEEEcCCCChhhhhcccHHHHc
Q 026360           85 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA  116 (240)
Q Consensus        85 ~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~  116 (240)
                      +++++++++|+|+.++ .+.+++..+.....+
T Consensus        81 ~~~~~l~~~DlVi~~~-d~~~~r~~i~~~~~~  111 (174)
T cd01487          81 NLEGLFGDCDIVVEAF-DNAETKAMLAESLLG  111 (174)
T ss_pred             hHHHHhcCCCEEEECC-CCHHHHHHHHHHHHH
Confidence            3457788899888884 456677666555444

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.33  E-value=0.0088  Score=50.46  Aligned_cols=37  Identities=24%  Similarity=0.263  Sum_probs=33.4

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCC
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRV   68 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~   68 (240)
                      ..|+.++|+|||+|.+|..+|+.|...|.. +.++|.+
T Consensus        24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            468999999999999999999999998885 8888876

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.32  E-value=0.011  Score=55.66  Aligned_cols=112  Identities=17%  Similarity=0.194  Sum_probs=69.7

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCC-hh---HHHhcCcee-cCCHHhhcCcCCEEEEcC--C-CChh
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQ---LEKETGAKF-EEDLDTMLPKCDIVVVNT--P-LTEK  105 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~-~~---~~~~~g~~~-~~~l~ell~~aDiVvl~l--p-~~~~  105 (240)
                      +.|++++|+|+|.-|.++|+.|...|++|+++|..... ..   ...+.+... .....+.+.++|+||..-  | ..|.
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~   85 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPE   85 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHH
Confidence            56899999999999999999999999999999954321 11   122212111 111235567899988763  3 2222


Q ss_pred             h-------hhcccHHH--Hcc-CC-----CCCEEEEcCCCcccCHHHHHHHHHhC
Q 026360          106 T-------RGMFDKDR--IAK-MK-----KGVLIVNNARGAIMDTQAVVDACSSG  145 (240)
Q Consensus       106 t-------~~~i~~~~--l~~-mk-----~gailIN~srg~~vd~~aL~~aL~~g  145 (240)
                      .       ..++.+-.  +.. ++     ...+-|.-+.|+.=...-+.+.|+..
T Consensus        86 ~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~  140 (468)
T PRK04690         86 ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAA  140 (468)
T ss_pred             HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhc
Confidence            1       12343322  232 31     23556666678888888888888753

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=96.31  E-value=0.037  Score=49.69  Aligned_cols=99  Identities=17%  Similarity=0.206  Sum_probs=58.8

Q ss_pred             CeEEEEcc-ChHHHHHHHHhccCCC-------EEEEEcCCCCC---hhHHHh----c-----CceecCCHHhhcCcCCEE
Q 026360           37 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVKMD---PQLEKE----T-----GAKFEEDLDTMLPKCDIV   96 (240)
Q Consensus        37 ~~vgIIG~-G~iG~~~A~~l~~~G~-------~V~~~d~~~~~---~~~~~~----~-----g~~~~~~l~ell~~aDiV   96 (240)
                      ++|+|||. |.+|..+|..+...|.       ++..+|.....   ...+.+    .     .+....+..+.+++||+|
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv   82 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA   82 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence            48999999 9999999998876555       78999974321   111110    0     112223455778999999


Q ss_pred             EEcCCCC--h-hhhh--------ccc--HHHHccCC-CCCEEEEcCCCcccCHHH
Q 026360           97 VVNTPLT--E-KTRG--------MFD--KDRIAKMK-KGVLIVNNARGAIMDTQA  137 (240)
Q Consensus        97 vl~lp~~--~-~t~~--------~i~--~~~l~~mk-~gailIN~srg~~vd~~a  137 (240)
                      +++.-..  + .++.        ++.  ...+.... |++++|.++  ..+|.-.
T Consensus        83 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t  135 (322)
T cd01338          83 LLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNA  135 (322)
T ss_pred             EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHH
Confidence            9986431  1 1111        110  01222334 588999987  4454444

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>CHL00194 ycf39 Ycf39; Provisional

Probab=96.30  E-value=0.01  Score=52.56  Aligned_cols=65  Identities=15%  Similarity=0.216  Sum_probs=47.1

Q ss_pred             CeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCcCCEEEEcCC
Q 026360           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        37 ~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~ell~~aDiVvl~lp  101 (240)
                      ++|.|.| .|.+|+.+++.|...|++|.+.+|+..+.......+++.       ..++.++++.+|+|+.+.+
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~   73 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST   73 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence            4789999 599999999999999999999998653322222234332       1345677899999887654

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.30  E-value=0.013  Score=54.52  Aligned_cols=115  Identities=15%  Similarity=0.169  Sum_probs=72.6

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCCh--hHHHh--cCceec--CCHHhhcCcCCEEEEcCC---CC
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKE--TGAKFE--EDLDTMLPKCDIVVVNTP---LT  103 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~--~~~~~--~g~~~~--~~l~ell~~aDiVvl~lp---~~  103 (240)
                      ++.++++.|+|.|.+|.++|+.|...|++|.++|......  .....  .|+...  ...++...++|+|+...-   ..
T Consensus         2 ~~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~   81 (445)
T PRK04308          2 TFQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQ   81 (445)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCC
Confidence            3578999999999999999999999999999999755332  12222  255432  112344568999888642   22


Q ss_pred             hhhh-------hccc-HHHHcc-CC---CCCEEEEcCCCcccCHHHHHHHHHhCCc
Q 026360          104 EKTR-------GMFD-KDRIAK-MK---KGVLIVNNARGAIMDTQAVVDACSSGHI  147 (240)
Q Consensus       104 ~~t~-------~~i~-~~~l~~-mk---~gailIN~srg~~vd~~aL~~aL~~g~i  147 (240)
                      |...       .++. .+.+.. ++   ...+-|.-+.|+.=...-+...|+....
T Consensus        82 p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~  137 (445)
T PRK04308         82 PDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGL  137 (445)
T ss_pred             HHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCC
Confidence            3221       1222 233333 22   2355566667888888888888876443

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=96.29  E-value=0.0058  Score=44.84  Aligned_cols=66  Identities=20%  Similarity=0.178  Sum_probs=43.1

Q ss_pred             CCeEEEEccChHHHHHHHHhc-cCCCE-EEEEcCCCCChhHHHhcCceecCCHHhhcCc--CCEEEEcCCC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLK-PFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPK--CDIVVVNTPL  102 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~-~~G~~-V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~--aDiVvl~lp~  102 (240)
                      ..++.|+|+|+.|++++.... ..|+. +.++|.++..... .-.|+....+++++.+.  .|+-++++|.
T Consensus         3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~-~i~gipV~~~~~~l~~~~~i~iaii~VP~   72 (96)
T PF02629_consen    3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGK-EIGGIPVYGSMDELEEFIEIDIAIITVPA   72 (96)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTS-EETTEEEESSHHHHHHHCTTSEEEEES-H
T ss_pred             CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCc-EECCEEeeccHHHhhhhhCCCEEEEEcCH
Confidence            458999999999999875443 45665 4566665543221 11255545577776665  9999999993

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=96.27  E-value=0.015  Score=52.05  Aligned_cols=91  Identities=22%  Similarity=0.265  Sum_probs=56.8

Q ss_pred             eEEEEcc-ChHHHHHHHHhccCCC--EEEEEcCCCCChhHHHh--c-----Ccee-c--CCHHhhcCcCCEEEEcCCCC-
Q 026360           38 TVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKE--T-----GAKF-E--EDLDTMLPKCDIVVVNTPLT-  103 (240)
Q Consensus        38 ~vgIIG~-G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~--~-----g~~~-~--~~l~ell~~aDiVvl~lp~~-  103 (240)
                      ||+|||. |.+|..+|..|...+.  ++..+|..+ ....+.+  .     .+.. .  +++.+.+++||+|+++.... 
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~   79 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPR   79 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCC
Confidence            6899999 9999999998876554  799999765 2111111  1     1121 1  13467899999999986432 


Q ss_pred             -h-h--------hhhccc--HHHHccCCCCCEEEEcCC
Q 026360          104 -E-K--------TRGMFD--KDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       104 -~-~--------t~~~i~--~~~l~~mk~gailIN~sr  129 (240)
                       + .        +..++.  .+.+..-.|++++|+++.
T Consensus        80 ~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN  117 (312)
T TIGR01772        80 KPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN  117 (312)
T ss_pred             CCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC
Confidence             1 1        111211  123334468999999974

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PLN02740 Alcohol dehydrogenase-like

Probab=96.27  E-value=0.015  Score=52.97  Aligned_cols=47  Identities=19%  Similarity=0.253  Sum_probs=40.1

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCce
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAK   81 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~   81 (240)
                      .|.+|.|+|.|.+|..+++.++..|. +|++.++++...+.++++|+.
T Consensus       198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~  245 (381)
T PLN02740        198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGIT  245 (381)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCc
Confidence            58899999999999999999999999 599998876666667777753

>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1

Probab=96.25  E-value=0.046  Score=42.89  Aligned_cols=97  Identities=14%  Similarity=0.251  Sum_probs=69.1

Q ss_pred             HHHHHhccCCCEEEEEcCCCC----ChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEE
Q 026360           50 LLLQRLKPFNCNLLYHDRVKM----DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV  125 (240)
Q Consensus        50 ~~A~~l~~~G~~V~~~d~~~~----~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailI  125 (240)
                      ..++.|...|++|++=.-...    +.+.-.+.|+..+++.++++++||+|+-.-|.        ..+.++.|++|.++|
T Consensus        18 ~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p--------~~~e~~~l~~g~~li   89 (136)
T PF05222_consen   18 EDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPP--------SEEELALLKPGQTLI   89 (136)
T ss_dssp             HHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEEE
T ss_pred             HHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCC--------CHHHHhhcCCCcEEE
Confidence            456778888999876653321    23344456888887788999999999777663        245678899999998


Q ss_pred             EcCCCcccCHHHHHHHHHhCCccEEEeeCCC
Q 026360          126 NNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (240)
Q Consensus       126 N~srg~~vd~~aL~~aL~~g~i~ga~lDV~~  156 (240)
                      -.....  ....+++.|.+.++...++|...
T Consensus        90 ~~~~~~--~~~~~~~~l~~~~it~~a~E~ip  118 (136)
T PF05222_consen   90 GFLHPA--QNKELLEALAKKGITAFALELIP  118 (136)
T ss_dssp             EE--GG--GHHHHHHHHHHCTEEEEEGGGSB
T ss_pred             Eeeccc--cCHHHHHHHHHCCCEEEEhhhCc
Confidence            877555  58999999999999988887543

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=96.25  E-value=0.012  Score=51.93  Aligned_cols=89  Identities=22%  Similarity=0.170  Sum_probs=62.2

Q ss_pred             CCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec------CCHHhhc-----CcCCEEEEcCCC
Q 026360           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE------EDLDTML-----PKCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~------~~l~ell-----~~aDiVvl~lp~  102 (240)
                      .|.+|.|.| .|.+|..+++.++..|.+|++.+++....+.++++|+..+      .++.+.+     ...|+++-++..
T Consensus       138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G~  217 (325)
T TIGR02825       138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVGG  217 (325)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCCH
Confidence            588999999 5999999999999999999988876655666666775321      1222222     136777776641


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEEcCC
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN~sr  129 (240)
                       +    .+ ...++.++++..+|.++.
T Consensus       218 -~----~~-~~~~~~l~~~G~iv~~G~  238 (325)
T TIGR02825       218 -E----FS-NTVIGQMKKFGRIAICGA  238 (325)
T ss_pred             -H----HH-HHHHHHhCcCcEEEEecc
Confidence             1    12 456777888888888763

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=96.24  E-value=0.0059  Score=54.02  Aligned_cols=95  Identities=22%  Similarity=0.272  Sum_probs=69.1

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCcee--------------cC----------CHHh
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF--------------EE----------DLDT   88 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~--------------~~----------~l~e   88 (240)
                      ...+.++-++|+|-+|-..+-..+..|+-|..+|-.+...+..+..|.+.              ..          -+.+
T Consensus       161 tv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~a~  240 (356)
T COG3288         161 TVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELVAE  240 (356)
T ss_pred             cccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHHHH
Confidence            46778889999999999999999999999999986554333333232211              11          1235


Q ss_pred             hcCcCCEEEEcC--CCChhhhhcccHHHHccCCCCCEEEEcC
Q 026360           89 MLPKCDIVVVNT--PLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus        89 ll~~aDiVvl~l--p~~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      ..++.|+|+.+.  |..|. -.++.++..+.||||+++||.+
T Consensus       241 ~~~~~DivITTAlIPGrpA-P~Lvt~~mv~sMkpGSViVDlA  281 (356)
T COG3288         241 QAKEVDIVITTALIPGRPA-PKLVTAEMVASMKPGSVIVDLA  281 (356)
T ss_pred             HhcCCCEEEEecccCCCCC-chhhHHHHHHhcCCCcEEEEeh
Confidence            678899998863  54433 4577889999999999999986

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=96.23  E-value=0.014  Score=52.44  Aligned_cols=89  Identities=18%  Similarity=0.258  Sum_probs=60.3

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCCCChhHHHhcCceec-----CCHH----hhcC--cCCEEEEcCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDLD----TMLP--KCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-----~~l~----ell~--~aDiVvl~lp~  102 (240)
                      .|.+|.|.|.|.+|..+++.++..|.+ |++.+++....+.++++|+..+     .+..    ++..  ..|+|+-++..
T Consensus       176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g~  255 (358)
T TIGR03451       176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVGR  255 (358)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECCCC
Confidence            489999999999999999999999995 8888887666666677775321     1111    1221  36777776642


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEEcC
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      . .+   + ...+..++++..+|.+|
T Consensus       256 ~-~~---~-~~~~~~~~~~G~iv~~G  276 (358)
T TIGR03451       256 P-ET---Y-KQAFYARDLAGTVVLVG  276 (358)
T ss_pred             H-HH---H-HHHHHHhccCCEEEEEC
Confidence            1 11   1 23455677777777776

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=96.23  E-value=0.012  Score=51.84  Aligned_cols=92  Identities=24%  Similarity=0.223  Sum_probs=61.4

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCCCChhHHHhcCce-ecC----CHH--h--hcCcCCEEEEcCCCCh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAK-FEE----DLD--T--MLPKCDIVVVNTPLTE  104 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~-~~~----~l~--e--ll~~aDiVvl~lp~~~  104 (240)
                      .|.++.|+|.|.+|+.+++.+++.|++ |++.++++...+.+.+.|+. ...    +..  .  .-...|+++-+.+.. 
T Consensus       159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~~-  237 (334)
T cd08234         159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGVP-  237 (334)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCCh-
Confidence            578999999999999999999999998 78888765444455555542 111    111  0  124578888776521 


Q ss_pred             hhhhcccHHHHccCCCCCEEEEcCCCc
Q 026360          105 KTRGMFDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       105 ~t~~~i~~~~l~~mk~gailIN~srg~  131 (240)
                          ....+.++.++++..+++++...
T Consensus       238 ----~~~~~~~~~l~~~G~~v~~g~~~  260 (334)
T cd08234         238 ----KTLEQAIEYARRGGTVLVFGVYA  260 (334)
T ss_pred             ----HHHHHHHHHHhcCCEEEEEecCC
Confidence                12234566778888888887543

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=96.21  E-value=0.011  Score=52.35  Aligned_cols=31  Identities=16%  Similarity=0.292  Sum_probs=27.0

Q ss_pred             eEEEEccChHHHHHHHHhccCCC-EEEEEcCC
Q 026360           38 TVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV   68 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~   68 (240)
                      +|.|+|+|.+|..+|+.|...|. +++++|..
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D   32 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG   32 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            58999999999999999999998 47777754

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PLN02602 lactate dehydrogenase

Probab=96.21  E-value=0.02  Score=52.00  Aligned_cols=92  Identities=17%  Similarity=0.229  Sum_probs=57.2

Q ss_pred             CeEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCChh-HHHh-------cC-cee--cCCHHhhcCcCCEEEEcCCCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKE-------TG-AKF--EEDLDTMLPKCDIVVVNTPLT  103 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~-~~~~-------~g-~~~--~~~l~ell~~aDiVvl~lp~~  103 (240)
                      +||+|||.|.+|..+|..+...|.  ++..+|....... .+.+       .+ ...  ..+.++ +++||+|+++.-..
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~~daDiVVitAG~~  116 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV-TAGSDLCIVTAGAR  116 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-hCCCCEEEECCCCC
Confidence            699999999999999998876655  6999998653221 1111       01 111  124444 89999999986432


Q ss_pred             --h-hhhh--------ccc--HHHHccCCCCCEEEEcCC
Q 026360          104 --E-KTRG--------MFD--KDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       104 --~-~t~~--------~i~--~~~l~~mk~gailIN~sr  129 (240)
                        + .++.        ++.  .+.+....|++++|+++-
T Consensus       117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN  155 (350)
T PLN02602        117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSN  155 (350)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence              1 1221        110  123344567899999983

>PLN00106 malate dehydrogenase

Probab=96.20  E-value=0.016  Score=52.10  Aligned_cols=97  Identities=21%  Similarity=0.209  Sum_probs=60.0

Q ss_pred             CCCeEEEEcc-ChHHHHHHHHhccCCC--EEEEEcCCCCChhHHH--h----cCce---ecCCHHhhcCcCCEEEEcCCC
Q 026360           35 EGKTVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEK--E----TGAK---FEEDLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG~-G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~--~----~g~~---~~~~l~ell~~aDiVvl~lp~  102 (240)
                      ..+||+|+|. |++|..+|..|...+.  ++..+|..+......+  .    ..+.   ..+++.+.+++||+|+++.-.
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~   96 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV   96 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence            4579999999 9999999999985444  7999998652211111  0    1111   123457889999999998642


Q ss_pred             --Ch-hhhhc-------ccHH---HHccCCCCCEEEEcCCCc
Q 026360          103 --TE-KTRGM-------FDKD---RIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       103 --~~-~t~~~-------i~~~---~l~~mk~gailIN~srg~  131 (240)
                        .+ .++.-       +-.+   .+....|++++++++-.-
T Consensus        97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv  138 (323)
T PLN00106         97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV  138 (323)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence              21 11111       1122   233345889999987543

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=96.20  E-value=0.022  Score=51.08  Aligned_cols=90  Identities=13%  Similarity=0.140  Sum_probs=60.5

Q ss_pred             CCCeEEEEccChHHHHHHHHhcc-CC-CEEEEEcCCCCChhHHHhcCceecCCHHhhcC--cCCEEEEcCCCChhhhhcc
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKP-FN-CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMF  110 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~-~G-~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDiVvl~lp~~~~t~~~i  110 (240)
                      .|.+|.|+|.|.+|...++.++. .| .+|++.++++.+.+.++..+....  .+++.+  ..|+|+-++... .+...+
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~--~~~~~~~~g~d~viD~~G~~-~~~~~~  239 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYL--IDDIPEDLAVDHAFECVGGR-GSQSAI  239 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceee--hhhhhhccCCcEEEECCCCC-ccHHHH
Confidence            48999999999999999988875 54 679999987666666655554321  222222  378888887621 011112


Q ss_pred             cHHHHccCCCCCEEEEcC
Q 026360          111 DKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       111 ~~~~l~~mk~gailIN~s  128 (240)
                       .+.++.++++..++.++
T Consensus       240 -~~~~~~l~~~G~iv~~G  256 (341)
T cd08237         240 -NQIIDYIRPQGTIGLMG  256 (341)
T ss_pred             -HHHHHhCcCCcEEEEEe
Confidence             35677889988888775

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK08223 hypothetical protein; Validated

Probab=96.20  E-value=0.021  Score=50.44  Aligned_cols=93  Identities=16%  Similarity=0.223  Sum_probs=60.1

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCCh-------------------h----HHHhcC----ce--
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-------------------Q----LEKETG----AK--   81 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~-------------------~----~~~~~g----~~--   81 (240)
                      ..|++++|.|||+|.+|..+|+.|...|. ++.++|.+....                   +    ...+.+    ++  
T Consensus        23 ~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~  102 (287)
T PRK08223         23 QRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAF  102 (287)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEE
Confidence            46999999999999999999999999987 477777653111                   0    011111    11  


Q ss_pred             ----ecCCHHhhcCcCCEEEEcCCCC-hhhhhcccHHHHccCCCCCEEEEc
Q 026360           82 ----FEEDLDTMLPKCDIVVVNTPLT-EKTRGMFDKDRIAKMKKGVLIVNN  127 (240)
Q Consensus        82 ----~~~~l~ell~~aDiVvl~lp~~-~~t~~~i~~~~l~~mk~gailIN~  127 (240)
                          ..++.+++++++|+|+-++..- -+++.+++......   +..+|..
T Consensus       103 ~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~---~iP~V~~  150 (287)
T PRK08223        103 PEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQR---GIPALTA  150 (287)
T ss_pred             ecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHc---CCCEEEE
Confidence                1135667888999988776432 25677776554433   3335554

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.19  E-value=0.017  Score=54.17  Aligned_cols=111  Identities=18%  Similarity=0.261  Sum_probs=67.5

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc---CceecCCHHhhcCcCCEEEEcC--C-CChhh-
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET---GAKFEEDLDTMLPKCDIVVVNT--P-LTEKT-  106 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~---g~~~~~~l~ell~~aDiVvl~l--p-~~~~t-  106 (240)
                      -.|++|+|+|+|.-|.++|+.|+. |++|+++|............   .+.. ....+.+.++|+|+..-  | ..|.. 
T Consensus         4 ~~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~vV~SPgI~~~~p~~~   81 (454)
T PRK01368          4 HTKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIA-ALSDSRWQNLDKIVLSPGIPLTHEIVK   81 (454)
T ss_pred             CCCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceec-cCChhHhhCCCEEEECCCCCCCCHHHH
Confidence            358999999999999999999995 99999999543322211211   1111 11234567899887763  2 22221 


Q ss_pred             ------hhcccH-HHH-ccCCC-CCEEEEcCCCcccCHHHHHHHHHhCC
Q 026360          107 ------RGMFDK-DRI-AKMKK-GVLIVNNARGAIMDTQAVVDACSSGH  146 (240)
Q Consensus       107 ------~~~i~~-~~l-~~mk~-gailIN~srg~~vd~~aL~~aL~~g~  146 (240)
                            ..++.+ +++ ..+++ ..+=|--+.|+.-...-+...|+...
T Consensus        82 ~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g  130 (454)
T PRK01368         82 IAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNG  130 (454)
T ss_pred             HHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcC
Confidence                  113332 332 23332 24555556688888888888888633

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=96.19  E-value=0.038  Score=49.27  Aligned_cols=64  Identities=23%  Similarity=0.348  Sum_probs=43.9

Q ss_pred             CeEEEEcc-ChHHHHHHHHhccCCC--EEEEEcCCC--CChh-----HHH---hcC----ceecCCHHhhcCcCCEEEEc
Q 026360           37 KTVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVK--MDPQ-----LEK---ETG----AKFEEDLDTMLPKCDIVVVN   99 (240)
Q Consensus        37 ~~vgIIG~-G~iG~~~A~~l~~~G~--~V~~~d~~~--~~~~-----~~~---~~g----~~~~~~l~ell~~aDiVvl~   99 (240)
                      ++|+|+|. |.+|..++..+...|.  +|+.+|+..  ....     ...   ..+    +....+.+ .+++||+|+++
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~-~l~~aDiViit   79 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLS-DVAGSDIVIIT   79 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHH-HhCCCCEEEEe
Confidence            58999998 9999999999988776  499999843  1110     001   111    12223444 58999999999


Q ss_pred             CC
Q 026360          100 TP  101 (240)
Q Consensus       100 lp  101 (240)
                      ..
T Consensus        80 ag   81 (309)
T cd05294          80 AG   81 (309)
T ss_pred             cC
Confidence            75

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK08328 hypothetical protein; Provisional

Probab=96.18  E-value=0.018  Score=49.12  Aligned_cols=37  Identities=24%  Similarity=0.325  Sum_probs=32.8

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCC
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV   68 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~   68 (240)
                      ..|.+++|.|+|+|.+|..+++.|...|. +++++|..
T Consensus        23 ~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D   60 (231)
T PRK08328         23 EKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ   60 (231)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            46899999999999999999999999997 48888854

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=96.18  E-value=0.015  Score=52.67  Aligned_cols=87  Identities=21%  Similarity=0.250  Sum_probs=50.9

Q ss_pred             CCCeEEEEc-cChHHHHHHHHhccCCC---EEEEEcCCCCChhHHHhcC--ceec-CCHHhhcCcCCEEEEcCCCChhhh
Q 026360           35 EGKTVGTVG-CGRIGKLLLQRLKPFNC---NLLYHDRVKMDPQLEKETG--AKFE-EDLDTMLPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        35 ~g~~vgIIG-~G~iG~~~A~~l~~~G~---~V~~~d~~~~~~~~~~~~g--~~~~-~~l~ell~~aDiVvl~lp~~~~t~  107 (240)
                      ...+|+|+| .|.+|+.+.+.|...++   ++.++.............+  .... .+. +.++++|+|++++|.. .. 
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~-~~~~~~D~vf~a~p~~-~s-   82 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTE-DSFDGVDIALFSAGGS-IS-   82 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCH-HHHcCCCEEEECCCcH-HH-
Confidence            457899999 59999999999987555   3433322111111111111  1111 122 4458899999999943 22 


Q ss_pred             hcccHHHHcc-CCCCCEEEEcC
Q 026360          108 GMFDKDRIAK-MKKGVLIVNNA  128 (240)
Q Consensus       108 ~~i~~~~l~~-mk~gailIN~s  128 (240)
                          .++... .+.|+.+||.|
T Consensus        83 ----~~~~~~~~~~g~~VIDlS  100 (344)
T PLN02383         83 ----KKFGPIAVDKGAVVVDNS  100 (344)
T ss_pred             ----HHHHHHHHhCCCEEEECC
Confidence                222222 25688899988

>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]

Probab=96.17  E-value=0.06  Score=47.60  Aligned_cols=95  Identities=17%  Similarity=0.267  Sum_probs=69.6

Q ss_pred             cCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCCh-----hHH----HhcC--ceecCCHHhhcCcCCEEEEcCC
Q 026360           34 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP-----QLE----KETG--AKFEEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        34 l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~-----~~~----~~~g--~~~~~~l~ell~~aDiVvl~lp  101 (240)
                      ++|+|+..+|= .+|+.++......+|++|.+..|....+     +.+    .+.|  +...+++++.++.+|+|..-+.
T Consensus       151 l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~eAv~gADvvyTDvW  230 (310)
T COG0078         151 LKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDVW  230 (310)
T ss_pred             ccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHHHhCCCCEEEecCc
Confidence            89999999995 5899999999999999999998764322     112    2224  4566799999999999988764


Q ss_pred             CC--hhhh-----------hcccHHHHccCCCCCEEEEcC
Q 026360          102 LT--EKTR-----------GMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       102 ~~--~~t~-----------~~i~~~~l~~mk~gailIN~s  128 (240)
                      .+  ++..           .-++.+.++.-++++++..|-
T Consensus       231 vSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHCL  270 (310)
T COG0078         231 VSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHCL  270 (310)
T ss_pred             ccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeCC
Confidence            32  1111           345777777778888887773

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=96.17  E-value=0.046  Score=50.64  Aligned_cols=109  Identities=13%  Similarity=0.178  Sum_probs=70.5

Q ss_pred             eEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChh-----HHH-hcCceec--CCHHhhcCcCCEEEEcC--C-CChhh
Q 026360           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-----LEK-ETGAKFE--EDLDTMLPKCDIVVVNT--P-LTEKT  106 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~-----~~~-~~g~~~~--~~l~ell~~aDiVvl~l--p-~~~~t  106 (240)
                      ++.|||+|..|.++|+.|+..|++|.++|.......     ..+ ..|+...  .+ .+.+.++|+|+..-  | ..|..
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~   79 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV   79 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence            478999999999999999999999999997543211     112 2465432  23 45567899887764  2 22321


Q ss_pred             h-------hcccH-HHHcc-CCCCCEEEEcCCCcccCHHHHHHHHHhCCc
Q 026360          107 R-------GMFDK-DRIAK-MKKGVLIVNNARGAIMDTQAVVDACSSGHI  147 (240)
Q Consensus       107 ~-------~~i~~-~~l~~-mk~gailIN~srg~~vd~~aL~~aL~~g~i  147 (240)
                      .       .++.+ +++.. ++...+-|.-+.|+.-...-+...|+....
T Consensus        80 ~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~  129 (433)
T TIGR01087        80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGL  129 (433)
T ss_pred             HHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence            1       12332 33322 344456666778988888888888886443

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=96.15  E-value=0.019  Score=50.49  Aligned_cols=89  Identities=18%  Similarity=0.145  Sum_probs=60.8

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhc--CcCCEEEEcCCCChhhhhcccH
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML--PKCDIVVVNTPLTEKTRGMFDK  112 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell--~~aDiVvl~lp~~~~t~~~i~~  112 (240)
                      .|.+|.|.|.|.+|..+++.++..|.+|++.+.++...+.++++|+....+.++..  ...|+++-+.....     ...
T Consensus       155 ~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vid~~g~~~-----~~~  229 (319)
T cd08242         155 PGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVETVLPDEAESEGGGFDVVVEATGSPS-----GLE  229 (319)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEeCccccccCCCCCEEEECCCChH-----HHH
Confidence            58899999999999999999999999998888766556666667764332322211  34788877664211     112


Q ss_pred             HHHccCCCCCEEEEcC
Q 026360          113 DRIAKMKKGVLIVNNA  128 (240)
Q Consensus       113 ~~l~~mk~gailIN~s  128 (240)
                      ..++.+++++.++..+
T Consensus       230 ~~~~~l~~~g~~v~~~  245 (319)
T cd08242         230 LALRLVRPRGTVVLKS  245 (319)
T ss_pred             HHHHHhhcCCEEEEEc
Confidence            4455677777777644

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>PRK14804 ornithine carbamoyltransferase; Provisional

Probab=96.15  E-value=0.024  Score=50.69  Aligned_cols=68  Identities=18%  Similarity=0.268  Sum_probs=52.8

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChh-------HHHhcC-ceecCCHHhhcCcCCEEEEcC
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-------LEKETG-AKFEEDLDTMLPKCDIVVVNT  100 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~-------~~~~~g-~~~~~~l~ell~~aDiVvl~l  100 (240)
                      .+.|++|++||- +++.++++..+..+|++|.+..|.....+       .++..| +...+++++.++++|+|..-+
T Consensus       150 ~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d~  226 (311)
T PRK14804        150 PLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTDT  226 (311)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEeee
Confidence            479999999996 79999999999999999999998542211       112223 445679999999999998843

>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=96.11  E-value=0.0087  Score=51.59  Aligned_cols=95  Identities=19%  Similarity=0.205  Sum_probs=65.1

Q ss_pred             CeEEEEccChHHHHHHHHhccCCC----EEEEEcCCCCChhH-HHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNC----NLLYHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~----~V~~~d~~~~~~~~-~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~  111 (240)
                      +++|+||.|.|..++++.+...|.    ++..+.++...... ++..|++.+.+-.+.++.+|++++++.  |..-.-+.
T Consensus         1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~svK--p~~i~~vl   78 (267)
T KOG3124|consen    1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSVK--PQVIESVL   78 (267)
T ss_pred             CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEeec--chhHHHHh
Confidence            368999999999999999988775    46666664434444 667788766566888999999999985  22222222


Q ss_pred             HHHHccCCCCCEEEEcCCCccc
Q 026360          112 KDRIAKMKKGVLIVNNARGAIM  133 (240)
Q Consensus       112 ~~~l~~mk~gailIN~srg~~v  133 (240)
                      .+.-.....+.+++.+.-|..+
T Consensus        79 s~~~~~~~~~~iivS~aaG~tl  100 (267)
T KOG3124|consen   79 SEIKPKVSKGKIIVSVAAGKTL  100 (267)
T ss_pred             hcCccccccceEEEEEeecccH
Confidence            2222224456788888877543

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=96.09  E-value=0.02  Score=50.46  Aligned_cols=90  Identities=18%  Similarity=0.257  Sum_probs=61.7

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-CC----H-HhhcCcCCEEEEcCCCChhhhh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-ED----L-DTMLPKCDIVVVNTPLTEKTRG  108 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~~----l-~ell~~aDiVvl~lp~~~~t~~  108 (240)
                      .|.+|.|.|.|.+|+.+++.++..|.+|++.+++....+...+.|.... ..    . ...-...|+++-++....    
T Consensus       162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~----  237 (330)
T cd08245         162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGA----  237 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHH----
Confidence            5789999999999999999999999999998877655555555554211 11    1 111235788887764211    


Q ss_pred             cccHHHHccCCCCCEEEEcCC
Q 026360          109 MFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       109 ~i~~~~l~~mk~gailIN~sr  129 (240)
                       ...+.+..++++..+++++.
T Consensus       238 -~~~~~~~~l~~~G~~i~~~~  257 (330)
T cd08245         238 -AAEAALGGLRRGGRIVLVGL  257 (330)
T ss_pred             -HHHHHHHhcccCCEEEEECC
Confidence             23456777888888888863

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=96.09  E-value=0.026  Score=50.42  Aligned_cols=93  Identities=27%  Similarity=0.267  Sum_probs=58.2

Q ss_pred             CeEEEEcc-ChHHHHHHHHhccCCC--EEEEEcCCCCChhHH----Hh-c--Cceec---CCHHhhcCcCCEEEEcCCC-
Q 026360           37 KTVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLE----KE-T--GAKFE---EDLDTMLPKCDIVVVNTPL-  102 (240)
Q Consensus        37 ~~vgIIG~-G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~~~----~~-~--g~~~~---~~l~ell~~aDiVvl~lp~-  102 (240)
                      +||+|||. |.+|..+|..|...|.  ++..+|.. .....+    .. .  .+...   +++.+.+++||+|+++.-. 
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~-~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~   79 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV-NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVP   79 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC-ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCC
Confidence            48999999 9999999999987664  78999976 222111    11 0  12211   2345779999999998643 


Q ss_pred             -Ch-hhhh--------ccc--HHHHccCCCCCEEEEcCCC
Q 026360          103 -TE-KTRG--------MFD--KDRIAKMKKGVLIVNNARG  130 (240)
Q Consensus       103 -~~-~t~~--------~i~--~~~l~~mk~gailIN~srg  130 (240)
                       .| +++.        ++.  .+.+..-.|++++|+++..
T Consensus        80 ~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP  119 (310)
T cd01337          80 RKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP  119 (310)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence             12 1211        111  1233344689999999743

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=96.09  E-value=0.022  Score=50.53  Aligned_cols=89  Identities=17%  Similarity=0.236  Sum_probs=58.7

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-----CCHHh-h--cCcCCEEEEcCCCChhh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDT-M--LPKCDIVVVNTPLTEKT  106 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e-l--l~~aDiVvl~lp~~~~t  106 (240)
                      .|.+|.|.|.|.+|..+++.++..|.+|++.+++....+.+.++|+...     .++.+ +  +...|+++-++....  
T Consensus       163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~~g~~~--  240 (333)
T cd08296         163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLILATAPNAK--  240 (333)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCCCEEEECCCchH--
Confidence            5789999999999999999999999999999887655566666665321     11111 1  133577765543111  


Q ss_pred             hhcccHHHHccCCCCCEEEEcC
Q 026360          107 RGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       107 ~~~i~~~~l~~mk~gailIN~s  128 (240)
                         .....++.++++..+++++
T Consensus       241 ---~~~~~~~~l~~~G~~v~~g  259 (333)
T cd08296         241 ---AISALVGGLAPRGKLLILG  259 (333)
T ss_pred             ---HHHHHHHHcccCCEEEEEe
Confidence               1223456677777777775

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=96.08  E-value=0.044  Score=51.04  Aligned_cols=96  Identities=14%  Similarity=0.179  Sum_probs=61.6

Q ss_pred             cccCCCeEEEEcc----------ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCC
Q 026360           32 YDLEGKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        32 ~~l~g~~vgIIG~----------G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp  101 (240)
                      ..+.|++|+|+|+          ..-+..+++.|...|.+|.+|||.-...+.....+.... + ...++.+|+|++++.
T Consensus       310 ~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~-~-~~~~~~ad~vvi~t~  387 (425)
T PRK15182        310 INVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPV-S-EVKSSHYDAIIVAVG  387 (425)
T ss_pred             CCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcccc-h-hhhhcCCCEEEEccC
Confidence            4589999999996          457888999999999999999986322222222332111 1 224678999999987


Q ss_pred             CChhhhhcccHHHH-ccCCCCCEEEEcCCCcc
Q 026360          102 LTEKTRGMFDKDRI-AKMKKGVLIVNNARGAI  132 (240)
Q Consensus       102 ~~~~t~~~i~~~~l-~~mk~gailIN~srg~~  132 (240)
                      -. +.+. ++-+.+ +.|+...+++|+ |+-+
T Consensus       388 h~-~f~~-~~~~~~~~~~~~~~~iiD~-r~~~  416 (425)
T PRK15182        388 HQ-QFKQ-MGSEDIRGFGKDKHVLYDL-KYVL  416 (425)
T ss_pred             CH-Hhhc-CCHHHHHHhcCCCCEEEEC-CCCC
Confidence            43 3333 333333 345545688884 5543

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=96.06  E-value=0.018  Score=51.51  Aligned_cols=46  Identities=33%  Similarity=0.377  Sum_probs=37.8

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCCCChhHHHhcCc
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~~~~~~~~~~g~   80 (240)
                      .|++|.|.|.|.+|..+++.++..|.+ |++.++++...+.++++|+
T Consensus       160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga  206 (347)
T PRK10309        160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGA  206 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC
Confidence            588999999999999999999999997 6788876655555566664

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.05  E-value=0.07  Score=49.75  Aligned_cols=111  Identities=15%  Similarity=0.180  Sum_probs=70.4

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCCh--hHHHh--cCceec---CCHHhhcCcCCEEEEcC--C-CCh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKE--TGAKFE---EDLDTMLPKCDIVVVNT--P-LTE  104 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~--~~~~~--~g~~~~---~~l~ell~~aDiVvl~l--p-~~~  104 (240)
                      ++-+++|+|+|..|.++|+.|+..|++|.++|......  +...+  .|+...   .+ .+.+.++|+|+..-  | ..|
T Consensus         5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~-~~~~~~~d~vV~sp~i~~~~p   83 (448)
T PRK03803          5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFD-CELLVQASEIIISPGLALDTP   83 (448)
T ss_pred             cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCC-hHHhcCCCEEEECCCCCCCCH
Confidence            35689999999999999999999999999999754321  12222  265432   23 34567899887753  2 222


Q ss_pred             hhh-------hcccH-HHHcc-CCCCCEEEEcCCCcccCHHHHHHHHHhCC
Q 026360          105 KTR-------GMFDK-DRIAK-MKKGVLIVNNARGAIMDTQAVVDACSSGH  146 (240)
Q Consensus       105 ~t~-------~~i~~-~~l~~-mk~gailIN~srg~~vd~~aL~~aL~~g~  146 (240)
                      ...       .++.+ +.+.. ++...+-|--+.|+.=...-+...|+...
T Consensus        84 ~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g  134 (448)
T PRK03803         84 ALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAG  134 (448)
T ss_pred             HHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcC
Confidence            211       12332 33322 34345566666788888888888887643

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=96.04  E-value=0.023  Score=48.79  Aligned_cols=91  Identities=18%  Similarity=0.098  Sum_probs=62.3

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCCCChhHHHhcC-ceecCCHH-hh--cCcCCEEEEcCCCChhhhhc
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETG-AKFEEDLD-TM--LPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~~~~~~~~~~g-~~~~~~l~-el--l~~aDiVvl~lp~~~~t~~~  109 (240)
                      .|.++.|.|.|.+|..+++.++..|.+ |++.+++....+.+++.| ........ +.  -...|+++.++...+     
T Consensus        97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~~-----  171 (277)
T cd08255          97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGSPS-----  171 (277)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCChH-----
Confidence            588999999999999999999999999 988887655555555566 22111111 11  134788887765221     


Q ss_pred             ccHHHHccCCCCCEEEEcCCC
Q 026360          110 FDKDRIAKMKKGVLIVNNARG  130 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg  130 (240)
                      .....+..++++..+++++-.
T Consensus       172 ~~~~~~~~l~~~g~~~~~g~~  192 (277)
T cd08255         172 ALETALRLLRDRGRVVLVGWY  192 (277)
T ss_pred             HHHHHHHHhcCCcEEEEEecc
Confidence            123556778899989888743

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PRK06392 homoserine dehydrogenase; Provisional

Probab=96.04  E-value=0.034  Score=50.01  Aligned_cols=111  Identities=20%  Similarity=0.258  Sum_probs=65.3

Q ss_pred             CeEEEEccChHHHHHHHHhcc--------CCCEEEE-EcCCCC-------ChhHH---HhcC-c--eecC--CHHhhc-C
Q 026360           37 KTVGTVGCGRIGKLLLQRLKP--------FNCNLLY-HDRVKM-------DPQLE---KETG-A--KFEE--DLDTML-P   91 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~--------~G~~V~~-~d~~~~-------~~~~~---~~~g-~--~~~~--~l~ell-~   91 (240)
                      ++|+|+|+|++|+.+++.|..        .+.+|++ .|++..       ..+..   ...| +  ....  ++++++ .
T Consensus         1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~   80 (326)
T PRK06392          1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI   80 (326)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence            379999999999999999865        4566554 454321       01111   0101 1  1112  455554 4


Q ss_pred             cCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCccc-CHHHHHHHHHhCCcc
Q 026360           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIA  148 (240)
Q Consensus        92 ~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~v-d~~aL~~aL~~g~i~  148 (240)
                      ++|+|+=|+|....-... -.-..+.++.|.-+|-...|.+. .-+.|.++.++++..
T Consensus        81 ~~DVvVE~t~~~~~g~~~-~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~  137 (326)
T PRK06392         81 KPDVIVDVTPASKDGIRE-KNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRI  137 (326)
T ss_pred             CCCEEEECCCCCCcCchH-HHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCe
Confidence            689999999843211111 12234456788888888877765 456677777766554

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.02  E-value=0.023  Score=52.76  Aligned_cols=113  Identities=14%  Similarity=0.139  Sum_probs=69.5

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChh-HHHhcCceec--CCHHhhcCcCCEEEEcC--C-CChhh
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETGAKFE--EDLDTMLPKCDIVVVNT--P-LTEKT  106 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~~g~~~~--~~l~ell~~aDiVvl~l--p-~~~~t  106 (240)
                      ++.++++.|+|+|..|.+.++.|+..|++|.++|....... .....|+...  ....+.++..|+|+..-  | ..+..
T Consensus         3 ~~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~spgi~~~~~~~   82 (438)
T PRK03806          3 DYQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVASPGIALAHPSL   82 (438)
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEECCCCCCCCHHH
Confidence            45689999999999999999999999999999996543221 1112255432  12234567788766543  1 11211


Q ss_pred             -------hhcccH-HHHccC-CCCCEEEEcCCCcccCHHHHHHHHHhC
Q 026360          107 -------RGMFDK-DRIAKM-KKGVLIVNNARGAIMDTQAVVDACSSG  145 (240)
Q Consensus       107 -------~~~i~~-~~l~~m-k~gailIN~srg~~vd~~aL~~aL~~g  145 (240)
                             ..++.+ +.+..+ +...+-|--+.|+.=...-|.+.|+..
T Consensus        83 ~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~  130 (438)
T PRK03806         83 SAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAA  130 (438)
T ss_pred             HHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHHc
Confidence                   012332 333332 323455666678888888888888753

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=96.01  E-value=0.02  Score=51.90  Aligned_cols=46  Identities=30%  Similarity=0.389  Sum_probs=39.3

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCc
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~   80 (240)
                      .|.+|.|.|.|.+|...++.++..|. +|++.++++...+.++++|+
T Consensus       185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga  231 (368)
T TIGR02818       185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGA  231 (368)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC
Confidence            58899999999999999999999999 79999887666666666665

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.00  E-value=0.019  Score=51.72  Aligned_cols=88  Identities=22%  Similarity=0.293  Sum_probs=52.1

Q ss_pred             CCeEEEEc-cChHHHHHHHHhccCCCE---EEEEcCCCCChhHHHhcC--ceecCCHH-hhcCcCCEEEEcCCCChhhhh
Q 026360           36 GKTVGTVG-CGRIGKLLLQRLKPFNCN---LLYHDRVKMDPQLEKETG--AKFEEDLD-TMLPKCDIVVVNTPLTEKTRG  108 (240)
Q Consensus        36 g~~vgIIG-~G~iG~~~A~~l~~~G~~---V~~~d~~~~~~~~~~~~g--~~~~~~l~-ell~~aDiVvl~lp~~~~t~~  108 (240)
                      +++|+|+| .|.+|+.+++.|...|+.   +.+..+.....+...-.+  .... +++ +.++++|+|++++|.. .++.
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~-d~~~~~~~~vDvVf~A~g~g-~s~~   78 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVE-DLTTFDFSGVDIALFSAGGS-VSKK   78 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEe-eCCHHHHcCCCEEEECCChH-HHHH
Confidence            46899999 599999999999986654   455543322211111111  1211 222 3347899999999833 2222


Q ss_pred             cccHHHHccCCCCCEEEEcCC
Q 026360          109 MFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       109 ~i~~~~l~~mk~gailIN~sr  129 (240)
                      +.. .   .++.|+.+||.|.
T Consensus        79 ~~~-~---~~~~G~~VIDlS~   95 (334)
T PRK14874         79 YAP-K---AAAAGAVVIDNSS   95 (334)
T ss_pred             HHH-H---HHhCCCEEEECCc
Confidence            221 1   2356889998874

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=95.99  E-value=0.011  Score=49.72  Aligned_cols=65  Identities=23%  Similarity=0.227  Sum_probs=49.2

Q ss_pred             EEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCC--hhHHHhcCceec-------CCHHhhcCcCCEEEEcCCCC
Q 026360           39 VGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMD--PQLEKETGAKFE-------EDLDTMLPKCDIVVVNTPLT  103 (240)
Q Consensus        39 vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~--~~~~~~~g~~~~-------~~l~ell~~aDiVvl~lp~~  103 (240)
                      |.|+|. |.+|+.+++.|...+++|.+..|+..+  .......|++.+       +++.+.++.+|.|++++|..
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~   75 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS   75 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence            678995 999999999999999999999886522  222344565422       35567899999999999843

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.98  E-value=0.023  Score=55.69  Aligned_cols=69  Identities=23%  Similarity=0.264  Sum_probs=51.4

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCC---------------------hhHHHhcCceec--------C
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD---------------------PQLEKETGAKFE--------E   84 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~---------------------~~~~~~~g~~~~--------~   84 (240)
                      -.|++|.|||.|..|.+.|..|+..|++|++|++.+..                     .+.+...|+...        .
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i  404 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDI  404 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcC
Confidence            36999999999999999999999999999999875321                     122344565421        1


Q ss_pred             CHHhhcCcCCEEEEcCCC
Q 026360           85 DLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        85 ~l~ell~~aDiVvl~lp~  102 (240)
                      +++++..+.|.|++++..
T Consensus       405 ~~~~~~~~~DavilAtGa  422 (654)
T PRK12769        405 SLESLLEDYDAVFVGVGT  422 (654)
T ss_pred             CHHHHHhcCCEEEEeCCC
Confidence            455666789999998753

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=95.98  E-value=0.017  Score=55.95  Aligned_cols=70  Identities=19%  Similarity=0.343  Sum_probs=49.1

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHH-HhcCce-ecCC---HHhhcCcCCEEEEcCC
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETGAK-FEED---LDTMLPKCDIVVVNTP  101 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~-~~~g~~-~~~~---l~ell~~aDiVvl~lp  101 (240)
                      .....|+|||||-|..|+.+++.++.+|++|+++|+++..+... ....+. ...+   +.++++++|+|+....
T Consensus        18 ~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e   92 (577)
T PLN02948         18 HGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIE   92 (577)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecC
Confidence            35789999999999999999999999999999999865422211 110010 1123   4456778999876543

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=95.96  E-value=0.023  Score=50.60  Aligned_cols=88  Identities=24%  Similarity=0.181  Sum_probs=59.7

Q ss_pred             CCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-cCceec------CCHHhhc-----CcCCEEEEcCC
Q 026360           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAKFE------EDLDTML-----PKCDIVVVNTP  101 (240)
Q Consensus        35 ~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-~g~~~~------~~l~ell-----~~aDiVvl~lp  101 (240)
                      .|.+|.|.|. |.+|+.+++.++.+|.+|++.+++....+..++ +|+..+      .++.+.+     ...|+++-++.
T Consensus       151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~g  230 (338)
T cd08295         151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNVG  230 (338)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECCC
Confidence            5899999997 999999999999999999888876555555555 665311      1222211     24677776654


Q ss_pred             CChhhhhcccHHHHccCCCCCEEEEcC
Q 026360          102 LTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       102 ~~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      .     . ...+.++.++++..++.++
T Consensus       231 ~-----~-~~~~~~~~l~~~G~iv~~G  251 (338)
T cd08295         231 G-----K-MLDAVLLNMNLHGRIAACG  251 (338)
T ss_pred             H-----H-HHHHHHHHhccCcEEEEec
Confidence            1     1 1235567778888888775

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=95.96  E-value=0.025  Score=48.47  Aligned_cols=87  Identities=23%  Similarity=0.396  Sum_probs=60.4

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh----cCce--e-cCCHHhhcC---cCCEEEE-----
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE----TGAK--F-EEDLDTMLP---KCDIVVV-----   98 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~----~g~~--~-~~~l~ell~---~aDiVvl-----   98 (240)
                      +.|++|.=||+|  |..++.-+...|++|++.|.++...+.++.    -|+.  + ..+.+++.+   +.|+|++     
T Consensus        58 l~g~~vLDvGCG--gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlE  135 (243)
T COG2227          58 LPGLRVLDVGCG--GGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLE  135 (243)
T ss_pred             CCCCeEEEecCC--ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence            789999999998  347788888889999999998776665552    2332  2 235566665   6898866     


Q ss_pred             cCCCChhhhhcccHHHHccCCCCCEEEE
Q 026360           99 NTPLTEKTRGMFDKDRIAKMKKGVLIVN  126 (240)
Q Consensus        99 ~lp~~~~t~~~i~~~~l~~mk~gailIN  126 (240)
                      |+|..+.    +-....+.+|||.+++-
T Consensus       136 Hv~dp~~----~~~~c~~lvkP~G~lf~  159 (243)
T COG2227         136 HVPDPES----FLRACAKLVKPGGILFL  159 (243)
T ss_pred             ccCCHHH----HHHHHHHHcCCCcEEEE
Confidence            4553211    34457778899876654

>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional

Probab=95.93  E-value=0.049  Score=51.96  Aligned_cols=96  Identities=19%  Similarity=0.199  Sum_probs=68.2

Q ss_pred             ccCCCeEEEEcc---ChHHHHHHHHhccCC-CEEEEEcCCCC--Chh---HHHhcC--ceecCCHHhhcCcCCEE--EE-
Q 026360           33 DLEGKTVGTVGC---GRIGKLLLQRLKPFN-CNLLYHDRVKM--DPQ---LEKETG--AKFEEDLDTMLPKCDIV--VV-   98 (240)
Q Consensus        33 ~l~g~~vgIIG~---G~iG~~~A~~l~~~G-~~V~~~d~~~~--~~~---~~~~~g--~~~~~~l~ell~~aDiV--vl-   98 (240)
                      .+.|++|+++|=   +++.++++..+..+| ++|.+..|...  +.+   .+++.|  +...+++++.++++|+.  .. 
T Consensus       171 ~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~tdvw~~  250 (525)
T PRK13376        171 DNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDVAKIWYF  250 (525)
T ss_pred             CcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCccceEEE
Confidence            588999999996   699999999999998 99999887543  222   122334  44568999999999952  22 


Q ss_pred             ------cCCCC--h---h--hhhcccHHHHccCCCCCEEEEcC
Q 026360           99 ------NTPLT--E---K--TRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus        99 ------~lp~~--~---~--t~~~i~~~~l~~mk~gailIN~s  128 (240)
                            ..+..  +   .  -...++.+.++.+|+++++..+.
T Consensus       251 ~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcL  293 (525)
T PRK13376        251 TRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPL  293 (525)
T ss_pred             eccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCC
Confidence                  12111  0   1  12346888888899999888876

>PRK05442 malate dehydrogenase; Provisional

Probab=95.92  E-value=0.084  Score=47.49  Aligned_cols=65  Identities=20%  Similarity=0.273  Sum_probs=43.2

Q ss_pred             CeEEEEcc-ChHHHHHHHHhccCCC-------EEEEEcCCCCC---h----hHHHhc-----CceecCCHHhhcCcCCEE
Q 026360           37 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVKMD---P----QLEKET-----GAKFEEDLDTMLPKCDIV   96 (240)
Q Consensus        37 ~~vgIIG~-G~iG~~~A~~l~~~G~-------~V~~~d~~~~~---~----~~~~~~-----g~~~~~~l~ell~~aDiV   96 (240)
                      .+|+|||. |.+|..+|..|...|.       ++..+|..+..   .    +.....     ......+..+.+++||+|
T Consensus         5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV   84 (326)
T PRK05442          5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA   84 (326)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence            48999998 9999999988765443       78899974321   1    111100     122223555778999999


Q ss_pred             EEcCC
Q 026360           97 VVNTP  101 (240)
Q Consensus        97 vl~lp  101 (240)
                      +++.-
T Consensus        85 VitaG   89 (326)
T PRK05442         85 LLVGA   89 (326)
T ss_pred             EEeCC
Confidence            99864

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=95.91  E-value=0.022  Score=51.31  Aligned_cols=88  Identities=24%  Similarity=0.205  Sum_probs=59.4

Q ss_pred             CCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHH-hcCceec------CCHHhhc-----CcCCEEEEcCC
Q 026360           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFE------EDLDTML-----PKCDIVVVNTP  101 (240)
Q Consensus        35 ~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~~~------~~l~ell-----~~aDiVvl~lp  101 (240)
                      .|.+|.|.|. |.+|..+++.++..|++|++.+++..+.+.++ ++|+..+      .++.+.+     ...|+++-++.
T Consensus       158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~vG  237 (348)
T PLN03154        158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNVG  237 (348)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEECCC
Confidence            5899999998 99999999999999999988887654444444 5665321      1232222     13677776664


Q ss_pred             CChhhhhcccHHHHccCCCCCEEEEcC
Q 026360          102 LTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       102 ~~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      .     . .....++.++++..++.++
T Consensus       238 ~-----~-~~~~~~~~l~~~G~iv~~G  258 (348)
T PLN03154        238 G-----D-MLDAALLNMKIHGRIAVCG  258 (348)
T ss_pred             H-----H-HHHHHHHHhccCCEEEEEC
Confidence            1     1 1235567778888887775

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=95.90  E-value=0.039  Score=49.26  Aligned_cols=89  Identities=21%  Similarity=0.260  Sum_probs=60.5

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceec-----CCH----HhhcC--cCCEEEEcCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDL----DTMLP--KCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l----~ell~--~aDiVvl~lp~  102 (240)
                      .|.+|.|.|.|.+|..+++.++..|+ +|++.+++....+.+.+.|+...     .++    .+...  ..|+++-+...
T Consensus       172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~g~  251 (351)
T cd08233         172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFDCAGV  251 (351)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEECCCC
Confidence            58899999999999999999999999 78888876555555555565321     111    12222  37888877652


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEEcC
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      .+     ...+.++.++++..++.++
T Consensus       252 ~~-----~~~~~~~~l~~~G~~v~~g  272 (351)
T cd08233         252 QA-----TLDTAIDALRPRGTAVNVA  272 (351)
T ss_pred             HH-----HHHHHHHhccCCCEEEEEc
Confidence            11     1234566778888888876

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>PRK08265 short chain dehydrogenase; Provisional

Probab=95.90  E-value=0.022  Score=48.79  Aligned_cols=38  Identities=21%  Similarity=0.149  Sum_probs=34.1

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCC
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM   70 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~   70 (240)
                      +++++++.|.|. |.||+.+|+.|...|++|++.+++..
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~   41 (261)
T PRK08265          3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD   41 (261)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            478999999995 89999999999999999999998753

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=95.90  E-value=0.026  Score=51.00  Aligned_cols=47  Identities=26%  Similarity=0.230  Sum_probs=38.8

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCc
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~   80 (240)
                      -.|.+|.|+|.|.+|..+++.++.+|. +|++.+++....+.++++|+
T Consensus       183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga  230 (365)
T cd08277         183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGA  230 (365)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC
Confidence            358999999999999999999999999 68888886655555666665

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd08293 PTGR2 Prostaglandin reductase

Probab=95.90  E-value=0.026  Score=50.14  Aligned_cols=87  Identities=21%  Similarity=0.192  Sum_probs=58.8

Q ss_pred             CCeEEEEcc-ChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHh-cCceec-----CCHHhhc-----CcCCEEEEcCCC
Q 026360           36 GKTVGTVGC-GRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKE-TGAKFE-----EDLDTML-----PKCDIVVVNTPL  102 (240)
Q Consensus        36 g~~vgIIG~-G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~-~g~~~~-----~~l~ell-----~~aDiVvl~lp~  102 (240)
                      |.+|.|.|. |.+|..+++.++.+|+ +|++.+++....+.+.+ +|+..+     .++.+.+     ...|+++-++..
T Consensus       155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~  234 (345)
T cd08293         155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGG  234 (345)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCc
Confidence            489999998 9999999999999999 79988876544444443 665321     1222221     246788776652


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEEcC
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                       +    .+ .+.++.++++..+|.++
T Consensus       235 -~----~~-~~~~~~l~~~G~iv~~G  254 (345)
T cd08293         235 -E----IS-DTVISQMNENSHIILCG  254 (345)
T ss_pred             -H----HH-HHHHHHhccCCEEEEEe
Confidence             1    12 45667788888888875

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein

Probab=95.89  E-value=0.014  Score=52.57  Aligned_cols=62  Identities=21%  Similarity=0.422  Sum_probs=43.7

Q ss_pred             eEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHH-HhcCc-eecCC---HHhhcCcCCEEEEc
Q 026360           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETGA-KFEED---LDTMLPKCDIVVVN   99 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~-~~~g~-~~~~~---l~ell~~aDiVvl~   99 (240)
                      +|||||-|..|+.+++.++.+|++|+++|+++..+... ....+ ....+   +.++++.+|+|...
T Consensus         1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~e   67 (352)
T TIGR01161         1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITFE   67 (352)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEeC
Confidence            58999999999999999999999999999865433211 11101 11123   56678889987543

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=95.87  E-value=0.032  Score=50.34  Aligned_cols=46  Identities=20%  Similarity=0.242  Sum_probs=39.6

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCc
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~   80 (240)
                      .|.+|.|.|.|.+|..+++.++..|. +|++.++++...+.++++|+
T Consensus       187 ~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga  233 (369)
T cd08301         187 KGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGV  233 (369)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC
Confidence            58999999999999999999999999 79999887666666666765

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=95.87  E-value=0.028  Score=52.21  Aligned_cols=71  Identities=10%  Similarity=0.040  Sum_probs=52.1

Q ss_pred             ccccCCCeEEEEcc----------ChHHHHHHHHhccCC-CEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEc
Q 026360           31 AYDLEGKTVGTVGC----------GRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVN   99 (240)
Q Consensus        31 ~~~l~g~~vgIIG~----------G~iG~~~A~~l~~~G-~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~   99 (240)
                      +.++.|++|+|+|+          ..-+..+++.|+..| .+|.+|||.-............ ..++++.++.||+|+++
T Consensus       315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~-~~~~~~~~~~ad~vvi~  393 (415)
T PRK11064        315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVT-LVSLDEALATADVLVML  393 (415)
T ss_pred             ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCcee-eCCHHHHHhCCCEEEEC
Confidence            34688999999996          446778999999986 9999999863221111111222 36889999999999999


Q ss_pred             CCC
Q 026360          100 TPL  102 (240)
Q Consensus       100 lp~  102 (240)
                      ++-
T Consensus       394 t~~  396 (415)
T PRK11064        394 VDH  396 (415)
T ss_pred             CCC
Confidence            974

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=95.85  E-value=0.097  Score=40.86  Aligned_cols=32  Identities=22%  Similarity=0.186  Sum_probs=28.7

Q ss_pred             eEEEEccChHHHHHHHHhccCCC-EEEEEcCCC
Q 026360           38 TVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK   69 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~   69 (240)
                      +|.|+|+|.+|..+++.|...|. ++.++|...
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            58999999999999999999998 599998763

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=95.85  E-value=0.027  Score=50.57  Aligned_cols=89  Identities=18%  Similarity=0.229  Sum_probs=57.5

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceec---C--C-------HHhhc--CcCCEEEEc
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE---E--D-------LDTML--PKCDIVVVN   99 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~---~--~-------l~ell--~~aDiVvl~   99 (240)
                      .|.+|.|.|.|.+|..+++.++..|. +|++.+++....+..+++|+..+   .  +       +.++.  ...|+++-+
T Consensus       177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~vid~  256 (361)
T cd08231         177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGRGADVVIEA  256 (361)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHHhCCCCCcEEEEC
Confidence            68899999999999999999999999 89888876544555555665211   0  0       11111  235777666


Q ss_pred             CCCChhhhhcccHHHHccCCCCCEEEEcC
Q 026360          100 TPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       100 lp~~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      .....     .....+..++++..++.++
T Consensus       257 ~g~~~-----~~~~~~~~l~~~G~~v~~g  280 (361)
T cd08231         257 SGHPA-----AVPEGLELLRRGGTYVLVG  280 (361)
T ss_pred             CCChH-----HHHHHHHHhccCCEEEEEc
Confidence            54211     1224456677777777665

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=95.84  E-value=0.034  Score=48.78  Aligned_cols=46  Identities=22%  Similarity=0.267  Sum_probs=38.5

Q ss_pred             CCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus        35 ~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      .|.+|.|.|. |.+|..+++.++..|.+|++.++++...+..++.|+
T Consensus       146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~  192 (326)
T cd08289         146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKKLGA  192 (326)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCC
Confidence            3689999998 999999999999999999988877655566666665

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.83  E-value=0.019  Score=48.27  Aligned_cols=38  Identities=26%  Similarity=0.371  Sum_probs=34.0

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCC
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM   70 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~   70 (240)
                      ++.++++.|+|. |.+|..+++.|...|++|++.+|++.
T Consensus         2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~   40 (251)
T PRK07231          2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEE   40 (251)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            467899999995 89999999999999999999998753

>cd00704 MDH Malate dehydrogenase

Probab=95.81  E-value=0.059  Score=48.42  Aligned_cols=99  Identities=20%  Similarity=0.229  Sum_probs=58.7

Q ss_pred             CeEEEEcc-ChHHHHHHHHhccCCC-------EEEEEcCCC--CChh-----HHHhc-----CceecCCHHhhcCcCCEE
Q 026360           37 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVK--MDPQ-----LEKET-----GAKFEEDLDTMLPKCDIV   96 (240)
Q Consensus        37 ~~vgIIG~-G~iG~~~A~~l~~~G~-------~V~~~d~~~--~~~~-----~~~~~-----g~~~~~~l~ell~~aDiV   96 (240)
                      .+|+|+|. |.+|..+|..|...|.       ++..+|+..  ...+     .....     +.....+..+.+++||+|
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV   80 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA   80 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence            37999999 9999999998876442       588999764  2111     00100     111124566889999999


Q ss_pred             EEcCCC--Ch-hhh--------hccc--HHHHccC-CCCCEEEEcCCCcccCHHH
Q 026360           97 VVNTPL--TE-KTR--------GMFD--KDRIAKM-KKGVLIVNNARGAIMDTQA  137 (240)
Q Consensus        97 vl~lp~--~~-~t~--------~~i~--~~~l~~m-k~gailIN~srg~~vd~~a  137 (240)
                      +++.-.  .+ +++        .++.  ...+... +|++++|.++  .++|.-.
T Consensus        81 VitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t  133 (323)
T cd00704          81 ILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNA  133 (323)
T ss_pred             EEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHH
Confidence            987632  22 121        1111  1123334 5888888886  4455444

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.80  E-value=0.012  Score=53.81  Aligned_cols=84  Identities=19%  Similarity=0.179  Sum_probs=56.8

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCCh-------------------h----HHHhc--C--ceec
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-------------------Q----LEKET--G--AKFE   83 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~-------------------~----~~~~~--g--~~~~   83 (240)
                      ..|.+++|.|+|+|.+|..+++.|...|. ++.++|......                   +    ...+.  .  ++..
T Consensus        37 ~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~  116 (370)
T PRK05600         37 ERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNAL  116 (370)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEe
Confidence            46899999999999999999999999997 688888752110                   0    00111  1  1111


Q ss_pred             ------CCHHhhcCcCCEEEEcCCCChhhhhcccHHHHc
Q 026360           84 ------EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA  116 (240)
Q Consensus        84 ------~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~  116 (240)
                            .+.+++++++|+|+.|+- +.+++.++++...+
T Consensus       117 ~~~i~~~~~~~~~~~~DlVid~~D-n~~~r~~in~~~~~  154 (370)
T PRK05600        117 RERLTAENAVELLNGVDLVLDGSD-SFATKFLVADAAEI  154 (370)
T ss_pred             eeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH
Confidence                  244578889998877764 46677777654443

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=95.79  E-value=0.025  Score=54.98  Aligned_cols=37  Identities=16%  Similarity=0.196  Sum_probs=32.6

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCC
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRV   68 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~   68 (240)
                      ..|++.+|.|+|+|.+|..+|+.|.+.|.. ++++|..
T Consensus       334 ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D  371 (664)
T TIGR01381       334 ERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG  371 (664)
T ss_pred             HHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            468899999999999999999999999984 7777753

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=95.77  E-value=0.043  Score=48.53  Aligned_cols=91  Identities=22%  Similarity=0.246  Sum_probs=61.0

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCC-CEEEEEcCCCCChhHHHhcCceecCC--------HHhhcC--cCCEEEEcCCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFEED--------LDTMLP--KCDIVVVNTPLT  103 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G-~~V~~~d~~~~~~~~~~~~g~~~~~~--------l~ell~--~aDiVvl~lp~~  103 (240)
                      .|.+|.|.|.|.+|..+++.++..| .+|++.++++...+..+++|+...-+        +.++..  ..|+++-+.+..
T Consensus       167 ~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~dvvld~~g~~  246 (340)
T cd05284         167 PGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNASDDVVEEVRELTGGRGADAVIDFVGSD  246 (340)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcEEEcCCccHHHHHHHHhCCCCCCEEEEcCCCH
Confidence            5889999999999999999999998 89988887655555555566422111        222332  367777766521


Q ss_pred             hhhhhcccHHHHccCCCCCEEEEcCCC
Q 026360          104 EKTRGMFDKDRIAKMKKGVLIVNNARG  130 (240)
Q Consensus       104 ~~t~~~i~~~~l~~mk~gailIN~srg  130 (240)
                      +     ...+.+..+++++.++.++..
T Consensus       247 ~-----~~~~~~~~l~~~g~~i~~g~~  268 (340)
T cd05284         247 E-----TLALAAKLLAKGGRYVIVGYG  268 (340)
T ss_pred             H-----HHHHHHHHhhcCCEEEEEcCC
Confidence            1     123456667788888877644

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.76  E-value=0.033  Score=50.95  Aligned_cols=37  Identities=22%  Similarity=0.132  Sum_probs=33.5

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCC
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV   68 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~   68 (240)
                      ..|.+++|.|+|+|.+|..+++.|...|. ++.++|+.
T Consensus       131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        131 RRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            36899999999999999999999999998 58888876

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=95.75  E-value=0.035  Score=48.88  Aligned_cols=89  Identities=22%  Similarity=0.313  Sum_probs=60.5

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHh-hcCcCCEEEEcCCCChhhhhcccHH
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDT-MLPKCDIVVVNTPLTEKTRGMFDKD  113 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e-ll~~aDiVvl~lp~~~~t~~~i~~~  113 (240)
                      .|.++.|.|.|.+|..+++.++..|.+|++.+++....+.++..|+....+.++ .-+..|+++.+.+..    . ...+
T Consensus       167 ~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vD~vi~~~~~~----~-~~~~  241 (329)
T cd08298         167 PGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARELGADWAGDSDDLPPEPLDAAIIFAPVG----A-LVPA  241 (329)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhCCcEEeccCccCCCcccEEEEcCCcH----H-HHHH
Confidence            578999999999999999999999999988887665555566667643212221 113467777665421    1 2345


Q ss_pred             HHccCCCCCEEEEcC
Q 026360          114 RIAKMKKGVLIVNNA  128 (240)
Q Consensus       114 ~l~~mk~gailIN~s  128 (240)
                      .++.++++..++..+
T Consensus       242 ~~~~l~~~G~~v~~g  256 (329)
T cd08298         242 ALRAVKKGGRVVLAG  256 (329)
T ss_pred             HHHHhhcCCEEEEEc
Confidence            677788888787764

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=95.74  E-value=0.032  Score=49.72  Aligned_cols=64  Identities=14%  Similarity=0.194  Sum_probs=42.7

Q ss_pred             eEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCChh-HHHhc----------CceecCCHHhhcCcCCEEEEcCC
Q 026360           38 TVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKET----------GAKFEEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~-~~~~~----------g~~~~~~l~ell~~aDiVvl~lp  101 (240)
                      ||+|||.|.+|..+|..|...|.  ++..+|......+ .+.++          .+....+-.+.+++||+|+++.-
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG   77 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG   77 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence            68999999999999998876554  6999998643221 11110          11111122467899999999864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=95.73  E-value=0.0072  Score=49.83  Aligned_cols=66  Identities=20%  Similarity=0.241  Sum_probs=44.9

Q ss_pred             CeEEEEccChHHHHHHHH--hccCCCEE-EEEcCCCCChhH-HHhcCceecCCHHhhcC--cCCEEEEcCCC
Q 026360           37 KTVGTVGCGRIGKLLLQR--LKPFNCNL-LYHDRVKMDPQL-EKETGAKFEEDLDTMLP--KCDIVVVNTPL  102 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~--l~~~G~~V-~~~d~~~~~~~~-~~~~g~~~~~~l~ell~--~aDiVvl~lp~  102 (240)
                      -++.|||.|++|++++..  .+..|+++ -+||..+..... ....-+...+++++.++  +.|+.++|+|.
T Consensus        85 tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa  156 (211)
T COG2344          85 TNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPA  156 (211)
T ss_pred             eeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccH
Confidence            478999999999999865  34678985 577875532111 11122334567777777  67889999994

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=95.67  E-value=0.051  Score=47.21  Aligned_cols=89  Identities=24%  Similarity=0.207  Sum_probs=57.6

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCCCChhHHHhcCceec-----CCH----Hhhc--CcCCEEEEcCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDL----DTML--PKCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-----~~l----~ell--~~aDiVvl~lp~  102 (240)
                      .|.++.|.|.|.+|..+++.+++.|++ |++.++.+...+....+|+...     .++    .++.  ...|+++-+...
T Consensus       129 ~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~vd~vld~~g~  208 (312)
T cd08269         129 AGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDSEAIVERVRELTGGAGADVVIEAVGH  208 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence            588999999999999999999999999 8887765544444455554211     111    1222  236777666531


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEEcC
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      .     ......++.++++..+++++
T Consensus       209 ~-----~~~~~~~~~l~~~g~~~~~g  229 (312)
T cd08269         209 Q-----WPLDLAGELVAERGRLVIFG  229 (312)
T ss_pred             H-----HHHHHHHHHhccCCEEEEEc
Confidence            1     11234556677777787776

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=95.67  E-value=0.056  Score=49.81  Aligned_cols=154  Identities=17%  Similarity=0.180  Sum_probs=95.5

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCC---EEEEEcCCCCC---hhH----------HH-hcCceecCCHHhhcCcC
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC---NLLYHDRVKMD---PQL----------EK-ETGAKFEEDLDTMLPKC   93 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~---~V~~~d~~~~~---~~~----------~~-~~g~~~~~~l~ell~~a   93 (240)
                      +..|+..+|.+.|.|.-|-++++.+++.|+   +|+.+|+...-   .+.          +. ..+. . .. ++.+..+
T Consensus       194 gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~-~-~~-~~~~~~a  270 (432)
T COG0281         194 GKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGE-R-TL-DLALAGA  270 (432)
T ss_pred             CCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhcc-c-cc-cccccCC
Confidence            568999999999999999999999999998   58999976321   100          00 0110 1 11 4578889


Q ss_pred             CEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhC-CccEEEeeCCCCCCCCCCCCCCCCCCe
Q 026360           94 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG-HIAGYSGDVWNPQPAPKDHPWRYMPNQ  172 (240)
Q Consensus        94 DiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g-~i~ga~lDV~~~EP~~~~~~l~~~~nv  172 (240)
                      |+++=+.-     .+.+.++.++.|.+++++.=+|....--....+.+-..| .|.+-      .-|.   .|- +..|+
T Consensus       271 dv~iG~S~-----~G~~t~e~V~~Ma~~PiIfalaNP~pEi~Pe~a~~~~~~aaivaT------Grsd---~Pn-QvNNv  335 (432)
T COG0281         271 DVLIGVSG-----VGAFTEEMVKEMAKHPIIFALANPTPEITPEDAKEWGDGAAIVAT------GRSD---YPN-QVNNV  335 (432)
T ss_pred             CEEEEcCC-----CCCcCHHHHHHhccCCEEeecCCCCccCCHHHHhhcCCCCEEEEe------CCCC---Ccc-cccce
Confidence            98766543     288999999999999999988876532212222222222 23321      1121   122 67899


Q ss_pred             EEcCCCCCCcHHHH-----HHhhhhHHHHHHHHHHHc
Q 026360          173 AMTPHVSGTTIDAQ-----VIVHFFPVFMRLFTSFLS  204 (240)
Q Consensus       173 ~~TPH~a~~t~~~~-----~~~~~~~~~~~~~~~~~~  204 (240)
                      ++-|-+.-...+++     +.|..  .+.+-|..+.+
T Consensus       336 L~FPgIfrGaLd~rA~~ItdeM~~--AAa~AiA~~~~  370 (432)
T COG0281         336 LIFPGIFRGALDVRAKTITDEMKI--AAAEAIADLAR  370 (432)
T ss_pred             eEcchhhhhhHhhccccCCHHHHH--HHHHHHHhhcc
Confidence            99999854433332     22333  44555666654

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=95.65  E-value=0.042  Score=48.87  Aligned_cols=90  Identities=19%  Similarity=0.238  Sum_probs=61.1

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec------CCHHh----hcC-cCCEEEEcCCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE------EDLDT----MLP-KCDIVVVNTPLT  103 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~------~~l~e----ll~-~aDiVvl~lp~~  103 (240)
                      .|+++.|.|.|.+|+.+++.++..|.+|++.+++....+...+.|+...      .++.+    +.. ..|+++-++.. 
T Consensus       165 ~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~d~vi~~~g~-  243 (345)
T cd08260         165 PGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDLTGGGAHVSVDALGI-  243 (345)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHhCCCCCEEEEcCCC-
Confidence            5789999999999999999999999999988876555555555665211      11111    111 47878776642 


Q ss_pred             hhhhhcccHHHHccCCCCCEEEEcCC
Q 026360          104 EKTRGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       104 ~~t~~~i~~~~l~~mk~gailIN~sr  129 (240)
                      ..    .....+..+++++.+++++.
T Consensus       244 ~~----~~~~~~~~l~~~g~~i~~g~  265 (345)
T cd08260         244 PE----TCRNSVASLRKRGRHVQVGL  265 (345)
T ss_pred             HH----HHHHHHHHhhcCCEEEEeCC
Confidence            11    12345667888888888764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.65  E-value=0.047  Score=48.80  Aligned_cols=127  Identities=17%  Similarity=0.207  Sum_probs=75.1

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHH
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  113 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~  113 (240)
                      .|.++.|+|.|.||-.....++++|+ +|++.|..+...+.++++|++.+...    +..+       ..++....+. .
T Consensus       169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~----~~~~-------~~~~~~~~v~-~  236 (354)
T KOG0024|consen  169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPS----SHKS-------SPQELAELVE-K  236 (354)
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeec----cccc-------cHHHHHHHHH-h
Confidence            58999999999999999999999998 49999988777888888887654211    1111       0122222221 1


Q ss_pred             HHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCCC--CCCCeEEcCCCC
Q 026360          114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWR--YMPNQAMTPHVS  179 (240)
Q Consensus       114 ~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~--~~~nv~~TPH~a  179 (240)
                      .+..-+++ +.++++ |.-+..++-+.+++.|...  .+=.+..|+.+  -|++  .+.++-+++-+-
T Consensus       237 ~~g~~~~d-~~~dCs-G~~~~~~aai~a~r~gGt~--vlvg~g~~~~~--fpi~~v~~kE~~~~g~fr  298 (354)
T KOG0024|consen  237 ALGKKQPD-VTFDCS-GAEVTIRAAIKATRSGGTV--VLVGMGAEEIQ--FPIIDVALKEVDLRGSFR  298 (354)
T ss_pred             hccccCCC-eEEEcc-CchHHHHHHHHHhccCCEE--EEeccCCCccc--cChhhhhhheeeeeeeee
Confidence            22212232 344553 4445555556777766652  33334444432  2332  344677777654

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.64  E-value=0.039  Score=54.01  Aligned_cols=69  Identities=16%  Similarity=0.181  Sum_probs=51.7

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCC---------------------hhHHHhcCceec--------C
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD---------------------PQLEKETGAKFE--------E   84 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~---------------------~~~~~~~g~~~~--------~   84 (240)
                      ..|++|.|||.|..|...|..|+..|++|++|++.+..                     .+.....|+...        .
T Consensus       308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~  387 (639)
T PRK12809        308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDI  387 (639)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcC
Confidence            36999999999999999999999999999999876421                     123344555321        1


Q ss_pred             CHHhhcCcCCEEEEcCCC
Q 026360           85 DLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        85 ~l~ell~~aDiVvl~lp~  102 (240)
                      +++++....|.|++++..
T Consensus       388 ~~~~l~~~~DaV~latGa  405 (639)
T PRK12809        388 TFSDLTSEYDAVFIGVGT  405 (639)
T ss_pred             CHHHHHhcCCEEEEeCCC
Confidence            455677789999998754

>PRK07877 hypothetical protein; Provisional

Probab=95.64  E-value=0.031  Score=55.30  Aligned_cols=84  Identities=19%  Similarity=0.269  Sum_probs=58.0

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCC-----h-------------hHHH----hc--C--cee-
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMD-----P-------------QLEK----ET--G--AKF-   82 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~-----~-------------~~~~----~~--g--~~~-   82 (240)
                      ..|++++|+|+|+| +|..+|..|...|.  +++.+|.....     .             +.++    +.  .  ++. 
T Consensus       103 ~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~  181 (722)
T PRK07877        103 ERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVF  181 (722)
T ss_pred             HHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEE
Confidence            45899999999999 99999999998884  68887754211     0             0010    11  1  111 


Q ss_pred             -----cCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHcc
Q 026360           83 -----EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAK  117 (240)
Q Consensus        83 -----~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~  117 (240)
                           .+++++++.++|+|+-|+- +-+++.+++....+.
T Consensus       182 ~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~  220 (722)
T PRK07877        182 TDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARAR  220 (722)
T ss_pred             eccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence                 1367788999999988886 467888888665544

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.61  E-value=0.13  Score=47.82  Aligned_cols=111  Identities=21%  Similarity=0.285  Sum_probs=68.7

Q ss_pred             cCC-CeEEEEccChHHHHHHHHhccC--CCEEEEEcCCCCCh--hHHHhcCceec---CCHHhhcCcCCEEEEcC--C-C
Q 026360           34 LEG-KTVGTVGCGRIGKLLLQRLKPF--NCNLLYHDRVKMDP--QLEKETGAKFE---EDLDTMLPKCDIVVVNT--P-L  102 (240)
Q Consensus        34 l~g-~~vgIIG~G~iG~~~A~~l~~~--G~~V~~~d~~~~~~--~~~~~~g~~~~---~~l~ell~~aDiVvl~l--p-~  102 (240)
                      +.+ ++|.|+|+|..|.+.++.|...  |++|.++|......  +..+. |+...   .+. +.+.++|+|+..-  | .
T Consensus         4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g~~~~~g~~~~-~~~~~~d~vV~SpgI~~~   81 (438)
T PRK04663          4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-DVELHSGGWNL-EWLLEADLVVTNPGIALA   81 (438)
T ss_pred             ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-CCEEEeCCCCh-HHhccCCEEEECCCCCCC
Confidence            456 7899999999999999998876  58899999654322  11222 65432   133 3457899887764  2 2


Q ss_pred             Chhhh-------hcccH-HHHc-cCCCCCEEEEcCCCcccCHHHHHHHHHhCC
Q 026360          103 TEKTR-------GMFDK-DRIA-KMKKGVLIVNNARGAIMDTQAVVDACSSGH  146 (240)
Q Consensus       103 ~~~t~-------~~i~~-~~l~-~mk~gailIN~srg~~vd~~aL~~aL~~g~  146 (240)
                      .|...       .++.+ +.+. .++...+-|--+.|+.=...-+...|+...
T Consensus        82 ~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g  134 (438)
T PRK04663         82 TPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAG  134 (438)
T ss_pred             CHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCC
Confidence            22211       12322 3332 234345556666688888887888887533

>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.60  E-value=0.093  Score=48.51  Aligned_cols=104  Identities=15%  Similarity=0.180  Sum_probs=65.5

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhc--CcCCEEEEcC--C-CChhh---hh
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML--PKCDIVVVNT--P-LTEKT---RG  108 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell--~~aDiVvl~l--p-~~~~t---~~  108 (240)
                      ++|.|+|+|..|.++|+.|+ .|++|+++|..+.... ..+.|+... + ++.+  +++|+|+..-  | ..|..   +.
T Consensus         1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~gi~~~-~-~~~~~~~~~d~vv~sp~i~~~~~~~~~a~~   76 (401)
T PRK03815          1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEGNLLL-P-SNDFDPNKSDLEIPSPGIPPSHPLIQKAKN   76 (401)
T ss_pred             CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcCCEEe-c-HHHcCcCCCCEEEECCCCCCCCHHHHHHHH
Confidence            46899999999999999999 9999999995432221 223465543 2 2234  4689876652  2 22221   22


Q ss_pred             cccH-HHHccCCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360          109 MFDK-DRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (240)
Q Consensus       109 ~i~~-~~l~~mk~gailIN~srg~~vd~~aL~~aL~~  144 (240)
                      ++.+ +.+..+.+..+-|--+.|+.=...-+...|+.
T Consensus        77 i~~~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~  113 (401)
T PRK03815         77 LISEYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLED  113 (401)
T ss_pred             HhhHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHH
Confidence            3322 23333223356666667888888888888876

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.59  E-value=0.021  Score=47.82  Aligned_cols=38  Identities=18%  Similarity=0.216  Sum_probs=33.8

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCC
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM   70 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~   70 (240)
                      ++.|+++.|.|. |.||..+++.+...|++|++.++++.
T Consensus         2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~   40 (238)
T PRK05786          2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNEN   40 (238)
T ss_pred             CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            467999999996 78999999999999999999998653

>PRK12862 malic enzyme; Reviewed

Probab=95.59  E-value=0.1  Score=52.02  Aligned_cols=129  Identities=17%  Similarity=0.176  Sum_probs=88.2

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCC---EEEEEcCCCC-----C-------hhHHHhcCceecCCHHhhcCcCCE
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC---NLLYHDRVKM-----D-------PQLEKETGAKFEEDLDTMLPKCDI   95 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~---~V~~~d~~~~-----~-------~~~~~~~g~~~~~~l~ell~~aDi   95 (240)
                      +..+...+|.|.|.|.-|..+|+.|...|.   +++.+|+...     .       ...++..   ...+++|+++.+|+
T Consensus       188 ~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~---~~~~l~e~~~~~~v  264 (763)
T PRK12862        188 GKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKT---DARTLAEVIEGADV  264 (763)
T ss_pred             CCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhhc---ccCCHHHHHcCCCE
Confidence            567899999999999999999999999898   6888886521     1       1112221   22589999999998


Q ss_pred             EEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHh--CCccEEEeeCCCCCCCCCCCCCCCCCCeE
Q 026360           96 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS--GHIAGYSGDVWNPQPAPKDHPWRYMPNQA  173 (240)
Q Consensus        96 Vvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~--g~i~ga~lDV~~~EP~~~~~~l~~~~nv~  173 (240)
                      ++=+.     +.+.++++.++.|.+.++|.=.|....-  -.=.++.+-  |.|.+-+-   ...|       -+..|++
T Consensus       265 ~iG~s-----~~g~~~~~~v~~M~~~piifalsNP~~E--~~p~~a~~~~~~~i~atGr---s~~p-------~Q~NN~~  327 (763)
T PRK12862        265 FLGLS-----AAGVLKPEMVKKMAPRPLIFALANPTPE--ILPEEARAVRPDAIIATGR---SDYP-------NQVNNVL  327 (763)
T ss_pred             EEEcC-----CCCCCCHHHHHHhccCCEEEeCCCCccc--CCHHHHHHhcCCEEEEECC---cCCC-------Cccccee
Confidence            76433     1488999999999999999999987642  122223333  33443331   1112       1456888


Q ss_pred             EcCCCC
Q 026360          174 MTPHVS  179 (240)
Q Consensus       174 ~TPH~a  179 (240)
                      +-|=++
T Consensus       328 ~FPgi~  333 (763)
T PRK12862        328 CFPYIF  333 (763)
T ss_pred             eccchh
Confidence            888764

>PLN02827 Alcohol dehydrogenase-like

Probab=95.59  E-value=0.044  Score=49.96  Aligned_cols=47  Identities=21%  Similarity=0.227  Sum_probs=38.6

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCCCChhHHHhcCce
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAK   81 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~   81 (240)
                      .|.+|.|.|.|.+|..+++.++..|.+ |++.++++...+.++++|+.
T Consensus       193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~  240 (378)
T PLN02827        193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVT  240 (378)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCc
Confidence            589999999999999999999999985 77888766555666666753

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.59  E-value=0.052  Score=48.18  Aligned_cols=87  Identities=21%  Similarity=0.174  Sum_probs=55.8

Q ss_pred             CCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecC-----CHHh--hc--CcCCEEEEcCCCCh
Q 026360           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE-----DLDT--ML--PKCDIVVVNTPLTE  104 (240)
Q Consensus        35 ~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~-----~l~e--ll--~~aDiVvl~lp~~~  104 (240)
                      .|.++.|.|. |.+|..+++.++..|.+|++.+.+. ..+.+++.|+....     ...+  ..  +..|+++-+... +
T Consensus       177 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~-~  254 (350)
T cd08274         177 AGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRALGADTVILRDAPLLADAKALGGEPVDVVADVVGG-P  254 (350)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHhcCCeEEEeCCCccHHHHHhhCCCCCcEEEecCCH-H
Confidence            5889999998 9999999999999999988777543 44445555542211     1111  11  236777666541 1


Q ss_pred             hhhhcccHHHHccCCCCCEEEEcC
Q 026360          105 KTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       105 ~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                           .....++.++++..+|+++
T Consensus       255 -----~~~~~~~~l~~~G~~v~~g  273 (350)
T cd08274         255 -----LFPDLLRLLRPGGRYVTAG  273 (350)
T ss_pred             -----HHHHHHHHhccCCEEEEec
Confidence                 1234566677777777664

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=95.57  E-value=0.058  Score=47.14  Aligned_cols=45  Identities=18%  Similarity=0.248  Sum_probs=37.1

Q ss_pred             CCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360           36 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus        36 g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      +.+|.|.|. |.+|..+++.++..|.+|++.+++....+.+.++|+
T Consensus       147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~  192 (325)
T cd05280         147 DGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQADYLKSLGA  192 (325)
T ss_pred             CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC
Confidence            568999998 999999999999999999888887655555555564

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=95.55  E-value=0.057  Score=48.19  Aligned_cols=77  Identities=17%  Similarity=0.186  Sum_probs=50.6

Q ss_pred             CeEEEEc-cChHHHHHHHHhccC-CCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHH
Q 026360           37 KTVGTVG-CGRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (240)
Q Consensus        37 ~~vgIIG-~G~iG~~~A~~l~~~-G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~  114 (240)
                      -+|+|+| -|-.|..+.+.|... .+++........         .. ..+.+++++++|++++++|.. ....+. ...
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~---------~~-~~~~~~~~~~~D~vFlalp~~-~s~~~~-~~~   69 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR---------KD-AAERAKLLNAADVAILCLPDD-AAREAV-SLV   69 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc---------cC-cCCHhHhhcCCCEEEECCCHH-HHHHHH-HHH
Confidence            3799999 599999999999876 345555543221         11 124567778999999999943 222222 111


Q ss_pred             HccCCCCCEEEEcC
Q 026360          115 IAKMKKGVLIVNNA  128 (240)
Q Consensus       115 l~~mk~gailIN~s  128 (240)
                         .+.|+.+||.|
T Consensus        70 ---~~~g~~VIDlS   80 (310)
T TIGR01851        70 ---DNPNTCIIDAS   80 (310)
T ss_pred             ---HhCCCEEEECC
Confidence               24678888888

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=95.54  E-value=0.039  Score=49.87  Aligned_cols=46  Identities=28%  Similarity=0.343  Sum_probs=38.8

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCc
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~   80 (240)
                      .|.+|.|.|.|.+|...++.++.+|+ +|++.+++..+.+.++++|+
T Consensus       186 ~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa  232 (368)
T cd08300         186 PGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGA  232 (368)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC
Confidence            58999999999999999999999999 69888887655566666665

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function

Probab=95.51  E-value=0.05  Score=43.23  Aligned_cols=87  Identities=22%  Similarity=0.294  Sum_probs=54.6

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHH
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  113 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~  113 (240)
                      ..|++|++||+=   ..+++.++..+.++.++|+++.....  ..+.......++++++||+|+++-.  .-..+-+ .+
T Consensus         9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~--~~~~~~~~~~~~~l~~aD~viiTGs--TlvN~Ti-~~   80 (147)
T PF04016_consen    9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGE--EPGDVPDEDAEEILPWADVVIITGS--TLVNGTI-DD   80 (147)
T ss_dssp             TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--S--SCT-EEGGGHHHHGGG-SEEEEECH--HCCTTTH-HH
T ss_pred             cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCC--CCCcCCHHHHHHHHccCCEEEEEee--eeecCCH-HH
Confidence            479999999962   13677888889999999987622211  1111134467899999999988752  0011112 35


Q ss_pred             HHccCCCCCEEEEcC
Q 026360          114 RIAKMKKGVLIVNNA  128 (240)
Q Consensus       114 ~l~~mk~gailIN~s  128 (240)
                      .++..+++..++=+|
T Consensus        81 iL~~~~~~~~vil~G   95 (147)
T PF04016_consen   81 ILELARNAREVILYG   95 (147)
T ss_dssp             HHHHTTTSSEEEEES
T ss_pred             HHHhCccCCeEEEEe
Confidence            677777777777665

; PDB: 3L5O_B 3NPG_A.

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.49  E-value=0.018  Score=52.37  Aligned_cols=37  Identities=22%  Similarity=0.240  Sum_probs=33.1

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCC
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV   68 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~   68 (240)
                      ..|++++|.|+|+|.+|..+++.|...|. ++.++|..
T Consensus        24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D   61 (355)
T PRK05597         24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD   61 (355)
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            46899999999999999999999999988 48888865

>PRK07411 hypothetical protein; Validated

Probab=95.44  E-value=0.039  Score=50.80  Aligned_cols=88  Identities=23%  Similarity=0.173  Sum_probs=57.7

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChh-----------------------HHHhc--Cc--ee-
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-----------------------LEKET--GA--KF-   82 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~-----------------------~~~~~--g~--~~-   82 (240)
                      ..|+..+|.|||+|.+|..+|+.|...|. ++..+|.+.....                       ...+.  .+  .. 
T Consensus        34 ~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~  113 (390)
T PRK07411         34 KRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY  113 (390)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence            46899999999999999999999999887 4788876521100                       00111  11  11 


Q ss_pred             ---c--CCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCC
Q 026360           83 ---E--EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK  120 (240)
Q Consensus        83 ---~--~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~  120 (240)
                         .  .+..+++.++|+|+.|+- +.+++.++++...+.-+|
T Consensus       114 ~~~~~~~~~~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~~~~~p  155 (390)
T PRK07411        114 ETRLSSENALDILAPYDVVVDGTD-NFPTRYLVNDACVLLNKP  155 (390)
T ss_pred             ecccCHHhHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCC
Confidence               1  233467889998887764 456777777555444333

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=95.43  E-value=0.057  Score=48.29  Aligned_cols=76  Identities=18%  Similarity=0.265  Sum_probs=49.9

Q ss_pred             CeEEEEc-cChHHHHHHHHhccCC-CEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHH
Q 026360           37 KTVGTVG-CGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (240)
Q Consensus        37 ~~vgIIG-~G~iG~~~A~~l~~~G-~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~  114 (240)
                      .+|+|+| .|-+|..+.+.|.... .++.....+... .      .   .+.++.++++|++++++|...      ..+.
T Consensus         3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~-~------~---~~~~~~~~~~DvvFlalp~~~------s~~~   66 (313)
T PRK11863          3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK-D------A---AARRELLNAADVAILCLPDDA------AREA   66 (313)
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC-c------c---cCchhhhcCCCEEEECCCHHH------HHHH
Confidence            5899999 6999999999998764 355544332211 0      1   234456678999999999432      2222


Q ss_pred             HccC-CCCCEEEEcC
Q 026360          115 IAKM-KKGVLIVNNA  128 (240)
Q Consensus       115 l~~m-k~gailIN~s  128 (240)
                      ...+ +.|..+||.|
T Consensus        67 ~~~~~~~g~~VIDlS   81 (313)
T PRK11863         67 VALIDNPATRVIDAS   81 (313)
T ss_pred             HHHHHhCCCEEEECC
Confidence            2222 4688899888

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=95.43  E-value=0.06  Score=47.31  Aligned_cols=67  Identities=24%  Similarity=0.299  Sum_probs=46.4

Q ss_pred             CCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh---c-----Cce-------ecCCHHhhcCcCCEEEE
Q 026360           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE---T-----GAK-------FEEDLDTMLPKCDIVVV   98 (240)
Q Consensus        35 ~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~---~-----g~~-------~~~~l~ell~~aDiVvl   98 (240)
                      .|++|.|.| .|-||+.+++.|...|++|.+.+++.........   .     .+.       ....++++++.+|+|+-
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih   82 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH   82 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence            378999999 6999999999999999999988876432211110   0     111       11346677888998877


Q ss_pred             cCC
Q 026360           99 NTP  101 (240)
Q Consensus        99 ~lp  101 (240)
                      +..
T Consensus        83 ~A~   85 (322)
T PLN02662         83 TAS   85 (322)
T ss_pred             eCC
Confidence            653

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=95.42  E-value=0.23  Score=49.48  Aligned_cols=134  Identities=15%  Similarity=0.121  Sum_probs=88.6

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCC---EEEEEcCCCC----C---hhHHHh-c-CceecCCHHhhcCcCCEEEE
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC---NLLYHDRVKM----D---PQLEKE-T-GAKFEEDLDTMLPKCDIVVV   98 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~---~V~~~d~~~~----~---~~~~~~-~-g~~~~~~l~ell~~aDiVvl   98 (240)
                      +..+...+|.|.|.|.-|..+|+.|...|.   +++.+|+...    .   ....+. + .-....+++|+++.+|+++=
T Consensus       180 ~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG  259 (752)
T PRK07232        180 GKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLG  259 (752)
T ss_pred             CCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEE
Confidence            467899999999999999999999998888   6888887531    1   111111 1 00123589999999997754


Q ss_pred             cCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCCCCCCCeEEcCCC
Q 026360           99 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHV  178 (240)
Q Consensus        99 ~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nv~~TPH~  178 (240)
                      . .    ..+.++++.++.|.+.+++.=.|....--..+.+.....|.|.+-+-   ...|       =+..|+++-|=+
T Consensus       260 ~-s----~~g~~~~~~v~~M~~~piifalsNP~~E~~p~~a~~~~~~~i~atGr---s~~p-------nQ~NN~~~FPgi  324 (752)
T PRK07232        260 L-S----AAGVLTPEMVKSMADNPIIFALANPDPEITPEEAKAVRPDAIIATGR---SDYP-------NQVNNVLCFPYI  324 (752)
T ss_pred             c-C----CCCCCCHHHHHHhccCCEEEecCCCCccCCHHHHHHhcCCEEEEECC---cCCC-------Ccccceeecchh
Confidence            3 2    14889999999999999999999877521222222222234443331   1112       145688888866


Q ss_pred             C
Q 026360          179 S  179 (240)
Q Consensus       179 a  179 (240)
                      +
T Consensus       325 ~  325 (752)
T PRK07232        325 F  325 (752)
T ss_pred             h
Confidence            4

>PRK10083 putative oxidoreductase; Provisional

Probab=95.42  E-value=0.058  Score=47.74  Aligned_cols=90  Identities=23%  Similarity=0.302  Sum_probs=57.4

Q ss_pred             CCCeEEEEccChHHHHHHHHhcc-CCCE-EEEEcCCCCChhHHHhcCceec-----CCHHhhcC----cCCEEEEcCCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKP-FNCN-LLYHDRVKMDPQLEKETGAKFE-----EDLDTMLP----KCDIVVVNTPLT  103 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~-~G~~-V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell~----~aDiVvl~lp~~  103 (240)
                      .|.+|.|.|.|.+|..+++.++. +|.+ |++.++++.+.+.+.++|+..+     .++.+.+.    +.|+++-++...
T Consensus       160 ~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~vid~~g~~  239 (339)
T PRK10083        160 EQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTLIIDAACHP  239 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCEEEECCCCH
Confidence            58899999999999999999986 6986 6677776555555666665321     12222221    234665555311


Q ss_pred             hhhhhcccHHHHccCCCCCEEEEcCC
Q 026360          104 EKTRGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       104 ~~t~~~i~~~~l~~mk~gailIN~sr  129 (240)
                       .    ...+.++.++++..+|+++.
T Consensus       240 -~----~~~~~~~~l~~~G~~v~~g~  260 (339)
T PRK10083        240 -S----ILEEAVTLASPAARIVLMGF  260 (339)
T ss_pred             -H----HHHHHHHHhhcCCEEEEEcc
Confidence             1    12345666777777877763

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=95.41  E-value=0.051  Score=55.80  Aligned_cols=94  Identities=9%  Similarity=0.116  Sum_probs=63.1

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCC-------------------------ChhHHHhcC--------
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM-------------------------DPQLEKETG--------   79 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~-------------------------~~~~~~~~g--------   79 (240)
                      .+.-.++.|+|.|++|+..++.+..+|++ . .++...                         ..+.....+        
T Consensus       200 gv~P~~vVi~G~G~Vg~gA~~i~~~lg~~-~-v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~  277 (1042)
T PLN02819        200 GICPLVFVFTGSGNVSQGAQEIFKLLPHT-F-VEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKA  277 (1042)
T ss_pred             CCCCeEEEEeCCchHHHHHHHHHhhcCCC-c-cCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchh
Confidence            34467899999999999999999988776 2 222110                         000000000        


Q ss_pred             -c-----eecCC-HHhhcCcCCEEEEcCCCChhhhhcccHH-HHccCCCCC----EEEEcC
Q 026360           80 -A-----KFEED-LDTMLPKCDIVVVNTPLTEKTRGMFDKD-RIAKMKKGV----LIVNNA  128 (240)
Q Consensus        80 -~-----~~~~~-l~ell~~aDiVvl~lp~~~~t~~~i~~~-~l~~mk~ga----ilIN~s  128 (240)
                       +     .+... +++.+..+|++|.++-..+.+-.++.++ ..+.||+|.    +|+|++
T Consensus       278 ~y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs  338 (1042)
T PLN02819        278 DYYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT  338 (1042)
T ss_pred             hhccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence             0     00111 3567889999999997666677888887 777899998    899986

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=95.41  E-value=0.17  Score=47.32  Aligned_cols=101  Identities=16%  Similarity=0.161  Sum_probs=61.2

Q ss_pred             CeEEEEcc-ChHHHHHHHHhccC-------CC--EEEEEcCCCCChhHH-----Hh---c--CceecCCHHhhcCcCCEE
Q 026360           37 KTVGTVGC-GRIGKLLLQRLKPF-------NC--NLLYHDRVKMDPQLE-----KE---T--GAKFEEDLDTMLPKCDIV   96 (240)
Q Consensus        37 ~~vgIIG~-G~iG~~~A~~l~~~-------G~--~V~~~d~~~~~~~~~-----~~---~--g~~~~~~l~ell~~aDiV   96 (240)
                      .+|+|||. |.+|..+|..|...       |.  +++.+|.+....+..     ..   +  .+....+..+.+++||+|
T Consensus       101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiV  180 (444)
T PLN00112        101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWA  180 (444)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEE
Confidence            48999999 99999999988755       44  688889865432211     11   1  122123445778999999


Q ss_pred             EEcCCC--Ch-hh--------hhccc--HHHHcc-CCCCCEEEEcCCCcccCHHHHH
Q 026360           97 VVNTPL--TE-KT--------RGMFD--KDRIAK-MKKGVLIVNNARGAIMDTQAVV  139 (240)
Q Consensus        97 vl~lp~--~~-~t--------~~~i~--~~~l~~-mk~gailIN~srg~~vd~~aL~  139 (240)
                      +++...  .+ .+        ..++.  .+.+.. ..|++++|.++  ..+|.-..+
T Consensus       181 VitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v  235 (444)
T PLN00112        181 LLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALI  235 (444)
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHH
Confidence            998643  11 11        11121  123334 46789999887  445544433

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=95.40  E-value=0.055  Score=48.29  Aligned_cols=89  Identities=20%  Similarity=0.193  Sum_probs=58.8

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCCCChhHHHhcCceec-----CCH----Hhhc--CcCCEEEEcCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDL----DTML--PKCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-----~~l----~ell--~~aDiVvl~lp~  102 (240)
                      .|.+|.|.|.|.+|..+++.++..|.+ |++.+++....+.++++|+..+     .++    .++.  ...|+++-+...
T Consensus       166 ~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g~  245 (351)
T cd08285         166 LGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAVIIAGGG  245 (351)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcEEEECCCC
Confidence            488999999999999999999999995 8888876545555566665321     111    1222  236777766542


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEEcC
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      .    . .-.+.++.++++..+|+++
T Consensus       246 ~----~-~~~~~~~~l~~~G~~v~~g  266 (351)
T cd08285         246 Q----D-TFEQALKVLKPGGTISNVN  266 (351)
T ss_pred             H----H-HHHHHHHHhhcCCEEEEec
Confidence            1    1 1234566677777777765

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=95.39  E-value=0.03  Score=53.87  Aligned_cols=69  Identities=12%  Similarity=0.145  Sum_probs=48.2

Q ss_pred             cCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh---------cC------ce----ec---CCHHhhc
Q 026360           34 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE---------TG------AK----FE---EDLDTML   90 (240)
Q Consensus        34 l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~---------~g------~~----~~---~~l~ell   90 (240)
                      -.|+++.|.|. |.||+.+++.|...|++|++++|+.........         .|      +.    .+   +++++.+
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL  157 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL  157 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence            36899999995 999999999999999999999886543321110         01      11    11   2344567


Q ss_pred             CcCCEEEEcCCC
Q 026360           91 PKCDIVVVNTPL  102 (240)
Q Consensus        91 ~~aDiVvl~lp~  102 (240)
                      ..+|+||.++..
T Consensus       158 ggiDiVVn~AG~  169 (576)
T PLN03209        158 GNASVVICCIGA  169 (576)
T ss_pred             cCCCEEEEcccc
Confidence            889999888753

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=95.37  E-value=0.0087  Score=45.57  Aligned_cols=78  Identities=22%  Similarity=0.280  Sum_probs=57.5

Q ss_pred             hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-----CCH----HhhcC--cCCEEEEcCCCChhhhhcccHHH
Q 026360           46 RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDL----DTMLP--KCDIVVVNTPLTEKTRGMFDKDR  114 (240)
Q Consensus        46 ~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l----~ell~--~aDiVvl~lp~~~~t~~~i~~~~  114 (240)
                      .||...++.++..|.+|++.++++.+.+.++++|+..+     .++    .++..  ..|+|+-|++.. +    .....
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~-~----~~~~~   75 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSG-D----TLQEA   75 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSH-H----HHHHH
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCcH-H----HHHHH
Confidence            37888999999999999999998777778888885422     112    23444  489999998732 1    23456


Q ss_pred             HccCCCCCEEEEcC
Q 026360          115 IAKMKKGVLIVNNA  128 (240)
Q Consensus       115 l~~mk~gailIN~s  128 (240)
                      ++.++++..++.++
T Consensus        76 ~~~l~~~G~~v~vg   89 (130)
T PF00107_consen   76 IKLLRPGGRIVVVG   89 (130)
T ss_dssp             HHHEEEEEEEEEES
T ss_pred             HHHhccCCEEEEEE
Confidence            77899999999997

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=95.37  E-value=0.052  Score=47.65  Aligned_cols=88  Identities=23%  Similarity=0.186  Sum_probs=58.5

Q ss_pred             CCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-----CCHHhhc-----CcCCEEEEcCCCC
Q 026360           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML-----PKCDIVVVNTPLT  103 (240)
Q Consensus        35 ~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell-----~~aDiVvl~lp~~  103 (240)
                      .|.++.|.| .|.+|..+++.++..|++|++.+++....+.++++|+..+     .++.+.+     ...|+|+-++.. 
T Consensus       143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~~g~-  221 (329)
T cd08294         143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFDNVGG-  221 (329)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEECCCH-
Confidence            588999999 6999999999999999999888876655566666665321     1221111     235666665541 


Q ss_pred             hhhhhcccHHHHccCCCCCEEEEcC
Q 026360          104 EKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       104 ~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      +     .....++.++++..++.++
T Consensus       222 ~-----~~~~~~~~l~~~G~iv~~g  241 (329)
T cd08294         222 E-----FSSTVLSHMNDFGRVAVCG  241 (329)
T ss_pred             H-----HHHHHHHhhccCCEEEEEc
Confidence            1     1235566677777777765

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=95.36  E-value=0.055  Score=48.63  Aligned_cols=65  Identities=22%  Similarity=0.204  Sum_probs=44.4

Q ss_pred             CeEEEEcc-ChHHHHHHHHhccCCC-------EEEEEcCCCCC---hhHHHhc---------CceecCCHHhhcCcCCEE
Q 026360           37 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVKMD---PQLEKET---------GAKFEEDLDTMLPKCDIV   96 (240)
Q Consensus        37 ~~vgIIG~-G~iG~~~A~~l~~~G~-------~V~~~d~~~~~---~~~~~~~---------g~~~~~~l~ell~~aDiV   96 (240)
                      .+|+|||. |.+|..+|..|...|.       ++..+|.....   ...+.++         +.....+..+.+++||+|
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV   83 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA   83 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence            48999998 9999999998886664       79999985311   1111110         112223556778999999


Q ss_pred             EEcCC
Q 026360           97 VVNTP  101 (240)
Q Consensus        97 vl~lp  101 (240)
                      +++.-
T Consensus        84 VitAG   88 (323)
T TIGR01759        84 LLVGA   88 (323)
T ss_pred             EEeCC
Confidence            99864

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=95.35  E-value=0.09  Score=54.02  Aligned_cols=84  Identities=23%  Similarity=0.283  Sum_probs=59.7

Q ss_pred             HHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCCh---------------------hH
Q 026360           16 QVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP---------------------QL   74 (240)
Q Consensus        16 ~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~---------------------~~   74 (240)
                      +..+| |-....   .-.=.|++|+|||-|..|-+.|..|...|+.|++|.|+....                     +.
T Consensus      1769 af~eg-wm~p~p---p~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~l 1844 (2142)
T KOG0399|consen 1769 AFEEG-WMKPCP---PAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDL 1844 (2142)
T ss_pred             HHHhc-CCccCC---cccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHH
Confidence            34444 865432   223479999999999999999999999999999998764320                     11


Q ss_pred             HHhcCceec--------CCHHhhcCcCCEEEEcCCCC
Q 026360           75 EKETGAKFE--------EDLDTMLPKCDIVVVNTPLT  103 (240)
Q Consensus        75 ~~~~g~~~~--------~~l~ell~~aDiVvl~lp~~  103 (240)
                      ....|+..+        -+++++.++-|.|+++...|
T Consensus      1845 l~~egi~f~tn~eigk~vs~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1845 LEQEGIRFVTNTEIGKHVSLDELKKENDAIVLATGST 1881 (2142)
T ss_pred             HHhhCceEEeeccccccccHHHHhhccCeEEEEeCCC
Confidence            122344322        37899999999999986543

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=95.34  E-value=0.059  Score=47.75  Aligned_cols=91  Identities=16%  Similarity=0.175  Sum_probs=60.0

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceec----CCH----Hhhc--CcCCEEEEcCCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE----EDL----DTML--PKCDIVVVNTPLT  103 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~----~~l----~ell--~~aDiVvl~lp~~  103 (240)
                      .|.+|.|.|.|.+|+.+++.++..|+ +|++.+..........++|+..+    .+.    .++.  ...|+++-+....
T Consensus       167 ~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~dvvid~~~~~  246 (344)
T cd08284         167 PGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAEPINFEDAEPVERVREATEGRGADVVLEAVGGA  246 (344)
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCeEEecCCcCHHHHHHHHhCCCCCCEEEECCCCH
Confidence            58999999999999999999999997 78887655434444455563211    111    1222  2478777766521


Q ss_pred             hhhhhcccHHHHccCCCCCEEEEcCCC
Q 026360          104 EKTRGMFDKDRIAKMKKGVLIVNNARG  130 (240)
Q Consensus       104 ~~t~~~i~~~~l~~mk~gailIN~srg  130 (240)
                      .     .....+..++++..+|.++..
T Consensus       247 ~-----~~~~~~~~l~~~g~~v~~g~~  268 (344)
T cd08284         247 A-----ALDLAFDLVRPGGVISSVGVH  268 (344)
T ss_pred             H-----HHHHHHHhcccCCEEEEECcC
Confidence            1     123556778888888888744

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>PRK15076 alpha-galactosidase; Provisional

Probab=95.34  E-value=0.029  Score=52.40  Aligned_cols=66  Identities=12%  Similarity=0.099  Sum_probs=44.1

Q ss_pred             CeEEEEccChHHHHHHH--Hh---ccC-CCEEEEEcCCCCChhHH--------HhcC----ceecCCHHhhcCcCCEEEE
Q 026360           37 KTVGTVGCGRIGKLLLQ--RL---KPF-NCNLLYHDRVKMDPQLE--------KETG----AKFEEDLDTMLPKCDIVVV   98 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~--~l---~~~-G~~V~~~d~~~~~~~~~--------~~~g----~~~~~~l~ell~~aDiVvl   98 (240)
                      ++|+|||.|.+|...+.  .+   .++ |.+|+.+|.++...+..        ...+    +....++.+.+++||+|+.
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~   81 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN   81 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence            58999999999955543  22   223 56899999875333311        1112    2334677899999999999


Q ss_pred             cCCC
Q 026360           99 NTPL  102 (240)
Q Consensus        99 ~lp~  102 (240)
                      +...
T Consensus        82 ti~v   85 (431)
T PRK15076         82 AIQV   85 (431)
T ss_pred             eeee
Confidence            8753

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.32  E-value=0.057  Score=50.37  Aligned_cols=109  Identities=17%  Similarity=0.203  Sum_probs=67.9

Q ss_pred             eEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChh-----HHHhcCceec--CCHH-----hhcCcCCEEEEcCCCC--
Q 026360           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-----LEKETGAKFE--EDLD-----TMLPKCDIVVVNTPLT--  103 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~-----~~~~~g~~~~--~~l~-----ell~~aDiVvl~lp~~--  103 (240)
                      +|.|||.|..|.+.|+.|...|++|.++|.......     .....|+...  ...+     +.+.+.|.|+......  
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi~~~   81 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGIPWD   81 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCCCCC
Confidence            689999999999999999999999999997543211     2334465432  1121     4677899888754222  


Q ss_pred             -hhhh-------hcccH-HHH-ccCCC-CCEEEEcCCCcccCHHHHHHHHHhCC
Q 026360          104 -EKTR-------GMFDK-DRI-AKMKK-GVLIVNNARGAIMDTQAVVDACSSGH  146 (240)
Q Consensus       104 -~~t~-------~~i~~-~~l-~~mk~-gailIN~srg~~vd~~aL~~aL~~g~  146 (240)
                       |...       .++.+ +.+ ..+++ ..+-|--+.|+.-...-|.+.|+...
T Consensus        82 ~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~~g  135 (459)
T PRK02705         82 HPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQAAG  135 (459)
T ss_pred             CHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence             2111       12322 222 33333 34556666788888887778887633

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=95.32  E-value=0.086  Score=49.61  Aligned_cols=70  Identities=23%  Similarity=0.309  Sum_probs=51.7

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCC---------------------hhHHHhcCceec------C--
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD---------------------PQLEKETGAKFE------E--   84 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~---------------------~~~~~~~g~~~~------~--   84 (240)
                      -.+++|.|||.|..|...|..|+..|++|+++++.+..                     .+.+.+.|+...      .  
T Consensus       139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~  218 (467)
T TIGR01318       139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDI  218 (467)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCcc
Confidence            37899999999999999999999999999999865421                     233445665421      1  


Q ss_pred             CHHhhcCcCCEEEEcCCCC
Q 026360           85 DLDTMLPKCDIVVVNTPLT  103 (240)
Q Consensus        85 ~l~ell~~aDiVvl~lp~~  103 (240)
                      .++++....|.|++++...
T Consensus       219 ~~~~~~~~~D~vilAtGa~  237 (467)
T TIGR01318       219 SLDDLLEDYDAVFLGVGTY  237 (467)
T ss_pred             CHHHHHhcCCEEEEEeCCC
Confidence            3455556799999987644

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK14805 ornithine carbamoyltransferase; Provisional

Probab=95.31  E-value=0.17  Score=45.08  Aligned_cols=67  Identities=16%  Similarity=0.219  Sum_probs=49.2

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCCh-h--------HHHhcCce--ecCCHHhhcCcCCEEEEcC
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP-Q--------LEKETGAK--FEEDLDTMLPKCDIVVVNT  100 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~-~--------~~~~~g~~--~~~~l~ell~~aDiVvl~l  100 (240)
                      .+.|++|+++|- -++.++++..+..+|++|.+..|..... +        .++..|..  ..+++ +.++++|+|..-.
T Consensus       144 ~l~g~kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~-~a~~~aDvvy~~~  222 (302)
T PRK14805        144 DVSKVKLAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTSDI-EAIEGHDAIYTDT  222 (302)
T ss_pred             CcCCcEEEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEcCH-HHHCCCCEEEeec
Confidence            589999999996 4788999999999999999998754222 1        12233543  34565 5689999998844

>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed

Probab=95.29  E-value=0.069  Score=48.21  Aligned_cols=68  Identities=15%  Similarity=0.158  Sum_probs=50.2

Q ss_pred             cc-CCCeEEEEccC-------hHHHHHHHHhccCCCEEEEEcC-CCC--ChhH-------HHhcC--ceecCCHHhhcCc
Q 026360           33 DL-EGKTVGTVGCG-------RIGKLLLQRLKPFNCNLLYHDR-VKM--DPQL-------EKETG--AKFEEDLDTMLPK   92 (240)
Q Consensus        33 ~l-~g~~vgIIG~G-------~iG~~~A~~l~~~G~~V~~~d~-~~~--~~~~-------~~~~g--~~~~~~l~ell~~   92 (240)
                      .+ .|++|+|+|.|       ++.++++..+..+|++|.+..| ...  +.+.       +...|  +...+++++.+++
T Consensus       165 ~~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~  244 (335)
T PRK04523        165 TTLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAG  244 (335)
T ss_pred             CccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCC
Confidence            37 79999876643       7899999999999999999998 432  2111       12334  4456799999999


Q ss_pred             CCEEEEcC
Q 026360           93 CDIVVVNT  100 (240)
Q Consensus        93 aDiVvl~l  100 (240)
                      +|+|..-.
T Consensus       245 aDvvy~~~  252 (335)
T PRK04523        245 ADVVYAKS  252 (335)
T ss_pred             CCEEEece
Confidence            99998754

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=95.28  E-value=0.05  Score=50.77  Aligned_cols=109  Identities=17%  Similarity=0.175  Sum_probs=69.0

Q ss_pred             eEEEEccChHHHH-HHHHhccCCCEEEEEcCCCCC-hhHHHhcCceecC-CHHhhcCcCCEEEEcC--C-CChhhh----
Q 026360           38 TVGTVGCGRIGKL-LLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFEE-DLDTMLPKCDIVVVNT--P-LTEKTR----  107 (240)
Q Consensus        38 ~vgIIG~G~iG~~-~A~~l~~~G~~V~~~d~~~~~-~~~~~~~g~~~~~-~l~ell~~aDiVvl~l--p-~~~~t~----  107 (240)
                      ++-+||.|..|.+ +|+.|+..|++|.++|..... .+..++.|+.... .-.+.+.++|+|+..-  | ..|...    
T Consensus         1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~   80 (448)
T TIGR01082         1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKE   80 (448)
T ss_pred             CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHH
Confidence            3679999999998 999999999999999975432 1223344665432 1234567899888763  2 222211    


Q ss_pred             ---hcccH-HHHcc-CC-CCCEEEEcCCCcccCHHHHHHHHHhCC
Q 026360          108 ---GMFDK-DRIAK-MK-KGVLIVNNARGAIMDTQAVVDACSSGH  146 (240)
Q Consensus       108 ---~~i~~-~~l~~-mk-~gailIN~srg~~vd~~aL~~aL~~g~  146 (240)
                         .++.+ +++.. ++ ...+-|--+.|+.=...-+...|+...
T Consensus        81 ~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g  125 (448)
T TIGR01082        81 RGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAG  125 (448)
T ss_pred             cCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcC
Confidence               12322 33322 32 235566666788888888888887654

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.28  E-value=0.076  Score=46.02  Aligned_cols=88  Identities=16%  Similarity=0.105  Sum_probs=60.0

Q ss_pred             CCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCcee-cCCHHhhc-CcCCEEEEcCCCChhhhhccc
Q 026360           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-EEDLDTML-PKCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        35 ~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-~~~l~ell-~~aDiVvl~lp~~~~t~~~i~  111 (240)
                      .|.++.|.|. |.+|+.+++.++..|.+|++.++++...+.+++.|+.. ....+++. ...|+++-++..    .  ..
T Consensus       132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vl~~~g~----~--~~  205 (305)
T cd08270         132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRELGAAEVVVGGSELSGAPVDLVVDSVGG----P--QL  205 (305)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEeccccccCCCceEEEECCCc----H--HH
Confidence            5899999998 99999999999999999988887655555555566521 11111111 246777666541    1  12


Q ss_pred             HHHHccCCCCCEEEEcC
Q 026360          112 KDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       112 ~~~l~~mk~gailIN~s  128 (240)
                      .+.++.++++..+|+++
T Consensus       206 ~~~~~~l~~~G~~v~~g  222 (305)
T cd08270         206 ARALELLAPGGTVVSVG  222 (305)
T ss_pred             HHHHHHhcCCCEEEEEe
Confidence            45677788888888876

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=95.28  E-value=0.077  Score=46.89  Aligned_cols=89  Identities=25%  Similarity=0.324  Sum_probs=58.3

Q ss_pred             CCCeEEEEccChHHHHHHHHhcc-CCCEEEEEcCCCCChhHHHhcCceec------CCHH----hhcCcCCEEEEcCCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKP-FNCNLLYHDRVKMDPQLEKETGAKFE------EDLD----TMLPKCDIVVVNTPLT  103 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~-~G~~V~~~d~~~~~~~~~~~~g~~~~------~~l~----ell~~aDiVvl~lp~~  103 (240)
                      .|.+|.|.|.|.+|..+++.++. .|.+|++.++++...+.++++|+..+      .+..    +.....|+++++.. .
T Consensus       162 ~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~v~~~~~~~d~vi~~~~-~  240 (338)
T PRK09422        162 PGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVGADLTINSKRVEDVAKIIQEKTGGAHAAVVTAV-A  240 (338)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHcCCcEEecccccccHHHHHHHhcCCCcEEEEeCC-C
Confidence            57899999999999999999997 59999999887666666666665321      1111    12233565555543 1


Q ss_pred             hhhhhcccHHHHccCCCCCEEEEcC
Q 026360          104 EKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       104 ~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      ..    ...+.++.++++..++.++
T Consensus       241 ~~----~~~~~~~~l~~~G~~v~~g  261 (338)
T PRK09422        241 KA----AFNQAVDAVRAGGRVVAVG  261 (338)
T ss_pred             HH----HHHHHHHhccCCCEEEEEe
Confidence            11    1235566777777777775

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=95.27  E-value=0.061  Score=48.41  Aligned_cols=89  Identities=19%  Similarity=0.164  Sum_probs=62.8

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCCCChhHHHhcCceecCCH----------HhhcC-cCCEEEEcCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDL----------DTMLP-KCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~~~l----------~ell~-~aDiVvl~lp~  102 (240)
                      .|.+++|+|+|.+|-+..+.++..|.. |++.|.++.+.++++++|+..+-+.          .++-. .+|+.+-+.-.
T Consensus       185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e~~G~  264 (366)
T COG1062         185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAFECVGN  264 (366)
T ss_pred             CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEEEccCC
Confidence            689999999999999999999999985 8999999888899999998533222          22333 57787777753


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEEcC
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      .+     .-++.+....++...|-++
T Consensus       265 ~~-----~~~~al~~~~~~G~~v~iG  285 (366)
T COG1062         265 VE-----VMRQALEATHRGGTSVIIG  285 (366)
T ss_pred             HH-----HHHHHHHHHhcCCeEEEEe
Confidence            32     1234444455554444443

>PRK08324 short chain dehydrogenase; Validated

Probab=95.26  E-value=0.035  Score=54.66  Aligned_cols=39  Identities=28%  Similarity=0.313  Sum_probs=34.7

Q ss_pred             cccCCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 026360           32 YDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKM   70 (240)
Q Consensus        32 ~~l~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~   70 (240)
                      ..+.|+++.|.| .|.||..+|+.|...|++|++.+++..
T Consensus       418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~  457 (681)
T PRK08324        418 KPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEE  457 (681)
T ss_pred             cCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHH
Confidence            357899999999 599999999999999999999998753

>PRK12861 malic enzyme; Reviewed

Probab=95.24  E-value=0.17  Score=50.32  Aligned_cols=94  Identities=18%  Similarity=0.189  Sum_probs=73.0

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCC---EEEEEcCCC-----CC-------hhHHHhcCceecCCHHhhcCcCCE
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC---NLLYHDRVK-----MD-------PQLEKETGAKFEEDLDTMLPKCDI   95 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~---~V~~~d~~~-----~~-------~~~~~~~g~~~~~~l~ell~~aDi   95 (240)
                      +.+|...+|.|.|.|.-|..+|+.+...|.   +++.+|+..     ..       ...++..   ...++.|+++.+|+
T Consensus       184 gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~---~~~~L~eai~~adv  260 (764)
T PRK12861        184 GKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQET---DARTLAEVIGGADV  260 (764)
T ss_pred             CCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcccCCHHHHHHHhhc---CCCCHHHHHhcCCE
Confidence            567889999999999999999999999998   688888543     11       1122221   22589999999997


Q ss_pred             EEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcc
Q 026360           96 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI  132 (240)
Q Consensus        96 Vvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~  132 (240)
                      ++=+ .    ..+.++++.++.|.+.++|.=.|....
T Consensus       261 liG~-S----~~g~ft~e~v~~Ma~~PIIFaLsNPtp  292 (764)
T PRK12861        261 FLGL-S----AGGVLKAEMLKAMAARPLILALANPTP  292 (764)
T ss_pred             EEEc-C----CCCCCCHHHHHHhccCCEEEECCCCCc
Confidence            7543 2    248899999999999999999998764

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=95.20  E-value=0.035  Score=48.64  Aligned_cols=65  Identities=14%  Similarity=0.131  Sum_probs=45.6

Q ss_pred             CeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCcCCEEEEcCC
Q 026360           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        37 ~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~ell~~aDiVvl~lp  101 (240)
                      +++.|.| .|.+|+.+++.|...|++|+++++++.........++..       .++++++++.+|+|+.+..
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~   73 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA   73 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence            4788998 599999999999999999999998654322221123221       1245567888998877654

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=95.19  E-value=0.021  Score=44.26  Aligned_cols=34  Identities=21%  Similarity=0.266  Sum_probs=29.8

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK   69 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~   69 (240)
                      .++|.|+|+|.+|..+|+.|...|. ++..+|...
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            6799999999999999999999898 689998764

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=95.17  E-value=0.058  Score=48.45  Aligned_cols=87  Identities=22%  Similarity=0.260  Sum_probs=61.4

Q ss_pred             CCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCC-----HHh----hcC--cCCEEEEcCCCC
Q 026360           36 GKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEED-----LDT----MLP--KCDIVVVNTPLT  103 (240)
Q Consensus        36 g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~-----l~e----ll~--~aDiVvl~lp~~  103 (240)
                      |.+|.|.| .|.+|....+.++++|+.+++...++.+.+.++++|...+.+     +.+    +..  ..|+|+-++-  
T Consensus       143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~vG--  220 (326)
T COG0604         143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVG--  220 (326)
T ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECCC--
Confidence            89999999 899999999999999976555554444455777788643222     333    332  4799988875  


Q ss_pred             hhhhhcccHHHHccCCCCCEEEEcC
Q 026360          104 EKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       104 ~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                         ...+ .+.++.++++..++.++
T Consensus       221 ---~~~~-~~~l~~l~~~G~lv~ig  241 (326)
T COG0604         221 ---GDTF-AASLAALAPGGRLVSIG  241 (326)
T ss_pred             ---HHHH-HHHHHHhccCCEEEEEe
Confidence               1222 34677788888888876

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=95.16  E-value=0.075  Score=46.96  Aligned_cols=38  Identities=21%  Similarity=0.240  Sum_probs=33.9

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCC
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVK   69 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~   69 (240)
                      ..|...+|.|+|+|.+|..+|+.|...|.. ++.+|...
T Consensus        15 ~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~   53 (286)
T cd01491          15 KKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP   53 (286)
T ss_pred             HHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence            468999999999999999999999999985 88998754

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=95.15  E-value=0.051  Score=48.85  Aligned_cols=65  Identities=17%  Similarity=0.130  Sum_probs=43.9

Q ss_pred             CeEEEEcc-ChHHHHHHHHhccCC-------CEEEEEcCCCCC--hh-----HHH-----hcCceecCCHHhhcCcCCEE
Q 026360           37 KTVGTVGC-GRIGKLLLQRLKPFN-------CNLLYHDRVKMD--PQ-----LEK-----ETGAKFEEDLDTMLPKCDIV   96 (240)
Q Consensus        37 ~~vgIIG~-G~iG~~~A~~l~~~G-------~~V~~~d~~~~~--~~-----~~~-----~~g~~~~~~l~ell~~aDiV   96 (240)
                      .+|+|+|. |.+|..++..|...+       .+|..+|+.+..  .+     ...     ...+....++.+.+++||+|
T Consensus         3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV   82 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA   82 (325)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence            36999998 999999999987643       489999985421  11     000     00111234666889999999


Q ss_pred             EEcCC
Q 026360           97 VVNTP  101 (240)
Q Consensus        97 vl~lp  101 (240)
                      +.+.-
T Consensus        83 I~tAG   87 (325)
T cd01336          83 ILVGA   87 (325)
T ss_pred             EEeCC
Confidence            88764

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=95.11  E-value=0.038  Score=49.68  Aligned_cols=64  Identities=19%  Similarity=0.122  Sum_probs=42.2

Q ss_pred             eEEEEcc-ChHHHHHHHHhccCCC-------EEEEEcCCCCCh-hHHHhc-----------CceecCCHHhhcCcCCEEE
Q 026360           38 TVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVKMDP-QLEKET-----------GAKFEEDLDTMLPKCDIVV   97 (240)
Q Consensus        38 ~vgIIG~-G~iG~~~A~~l~~~G~-------~V~~~d~~~~~~-~~~~~~-----------g~~~~~~l~ell~~aDiVv   97 (240)
                      +|+|||. |.+|..+|..|...|.       ++..+|..+... ......           ++....+..+.+++||+|+
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV   80 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI   80 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence            5899999 9999999998876444       588999753210 100000           1111224467889999999


Q ss_pred             EcCC
Q 026360           98 VNTP  101 (240)
Q Consensus        98 l~lp  101 (240)
                      ++.-
T Consensus        81 itAG   84 (324)
T TIGR01758        81 LVGA   84 (324)
T ss_pred             EcCC
Confidence            8864

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PRK07806 short chain dehydrogenase; Provisional

Probab=95.10  E-value=0.1  Score=43.96  Aligned_cols=37  Identities=30%  Similarity=0.297  Sum_probs=32.6

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      .+.|+++.|.|. |.||+.+++.|...|++|++.+++.
T Consensus         3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~   40 (248)
T PRK07806          3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK   40 (248)
T ss_pred             CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence            367899999996 9999999999999999999888754

>PRK08374 homoserine dehydrogenase; Provisional

Probab=95.06  E-value=0.075  Score=47.99  Aligned_cols=107  Identities=18%  Similarity=0.293  Sum_probs=61.1

Q ss_pred             CeEEEEccChHHHHHHHHhcc--------CC--CEEEEE-cCCC-------CChhHHH----hcC----ce-----ecCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKP--------FN--CNLLYH-DRVK-------MDPQLEK----ETG----AK-----FEED   85 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~--------~G--~~V~~~-d~~~-------~~~~~~~----~~g----~~-----~~~~   85 (240)
                      .+|+|+|+|++|+.+++.+..        +|  .+|.++ |++.       ...+...    +.+    +.     ...+
T Consensus         3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~   82 (336)
T PRK08374          3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS   82 (336)
T ss_pred             eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence            589999999999999998866        56  555544 4321       1111111    111    00     0116


Q ss_pred             HHhhc--CcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCccc-CHHHHHHHHHhCCcc
Q 026360           86 LDTML--PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIA  148 (240)
Q Consensus        86 l~ell--~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~v-d~~aL~~aL~~g~i~  148 (240)
                      +++++  .++|+|+-+.+.. ....+    ..+.++.|.-+|-...|.+- ..++|.+..++++..
T Consensus        83 ~~ell~~~~~DVvVd~t~~~-~a~~~----~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~  143 (336)
T PRK08374         83 PEEIVEEIDADIVVDVTNDK-NAHEW----HLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLP  143 (336)
T ss_pred             HHHHHhcCCCCEEEECCCcH-HHHHH----HHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCe
Confidence            67777  4799999887522 22222    22335666667766665443 556777766665544

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=95.03  E-value=0.058  Score=49.70  Aligned_cols=37  Identities=22%  Similarity=0.181  Sum_probs=32.7

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCC
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV   68 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~   68 (240)
                      ..|.+.+|.|||+|.+|..+|+.|...|. ++.++|..
T Consensus        38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D   75 (392)
T PRK07878         38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD   75 (392)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            46899999999999999999999998887 58888864

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=95.01  E-value=0.079  Score=46.89  Aligned_cols=89  Identities=18%  Similarity=0.232  Sum_probs=57.2

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCcee-cC----CHHhhc---CcCCEEEEcCCCChh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKF-EE----DLDTML---PKCDIVVVNTPLTEK  105 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~-~~----~l~ell---~~aDiVvl~lp~~~~  105 (240)
                      .|.+|.|.|.|.+|+.+++.++..|. +|++.++++...+..++.|+.. +.    ++.++.   ...|+++-+..... 
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g~~~-  243 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASGAPA-  243 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCCCHH-
Confidence            78999999999999999999999998 7888887654444445555421 11    111222   12577766654211 


Q ss_pred             hhhcccHHHHccCCCCCEEEEcC
Q 026360          106 TRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailIN~s  128 (240)
                          ...+.++.+++++.+|+++
T Consensus       244 ----~~~~~~~~L~~~G~~v~~g  262 (339)
T cd08232         244 ----ALASALRVVRPGGTVVQVG  262 (339)
T ss_pred             ----HHHHHHHHHhcCCEEEEEe
Confidence                1234556677777777765

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>TIGR00112 proC pyrroline-5-carboxylate reductase

Probab=95.00  E-value=0.043  Score=47.18  Aligned_cols=81  Identities=14%  Similarity=0.217  Sum_probs=55.1

Q ss_pred             CEEEEEcCCCCChhH-HHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHH
Q 026360           60 CNLLYHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAV  138 (240)
Q Consensus        60 ~~V~~~d~~~~~~~~-~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL  138 (240)
                      .+|++++|++.+... ...+|+....+..++++++|+|+++++ ......++ .+.-..+.++.+||.++-|  +..+.|
T Consensus        10 ~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVk-P~~i~~vl-~~l~~~~~~~~~ivS~~ag--i~~~~l   85 (245)
T TIGR00112        10 YDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVK-PQDLEEVL-SELKSEKGKDKLLISIAAG--VTLEKL   85 (245)
T ss_pred             CeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeC-HHHHHHHH-HHHhhhccCCCEEEEecCC--CCHHHH
Confidence            478999997644333 344677767788899999999999998 23333332 2332335667899999866  677777


Q ss_pred             HHHHHh
Q 026360          139 VDACSS  144 (240)
Q Consensus       139 ~~aL~~  144 (240)
                      .+.+..
T Consensus        86 ~~~~~~   91 (245)
T TIGR00112        86 SQLLGG   91 (245)
T ss_pred             HHHcCC
Confidence            777753

This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=94.99  E-value=0.055  Score=37.94  Aligned_cols=33  Identities=24%  Similarity=0.281  Sum_probs=30.2

Q ss_pred             eEEEEccChHHHHHHHHhccCCCEEEEEcCCCC
Q 026360           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM   70 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~   70 (240)
                      ++.|||.|.+|-.+|..++.+|.+|+.+.+.+.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~   33 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR   33 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence            588999999999999999999999999988653

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=94.98  E-value=0.045  Score=49.48  Aligned_cols=86  Identities=17%  Similarity=0.238  Sum_probs=48.9

Q ss_pred             eEEEEc-cChHHHHHHHHhccCCCE---EEEEcCCCCChhHHHhcCce-ecCCH-HhhcCcCCEEEEcCCCChhhhhccc
Q 026360           38 TVGTVG-CGRIGKLLLQRLKPFNCN---LLYHDRVKMDPQLEKETGAK-FEEDL-DTMLPKCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        38 ~vgIIG-~G~iG~~~A~~l~~~G~~---V~~~d~~~~~~~~~~~~g~~-~~~~l-~ell~~aDiVvl~lp~~~~t~~~i~  111 (240)
                      +|+|+| -|.+|+.+++.|...++.   +.++.+...........+.. .+.++ .+.+.++|+++.|+|.. .+... .
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~-~s~~~-a   78 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGS-VSKEF-A   78 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHH-HHHHH-H
Confidence            589999 799999999999886665   33333322111111111211 11111 23458899999999843 22222 1


Q ss_pred             HHHHccCCCCCEEEEcC
Q 026360          112 KDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       112 ~~~l~~mk~gailIN~s  128 (240)
                      ...   ++.|+.+||.+
T Consensus        79 ~~~---~~~G~~VID~s   92 (339)
T TIGR01296        79 PKA---AKCGAIVIDNT   92 (339)
T ss_pred             HHH---HHCCCEEEECC
Confidence            111   35677888777

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=94.94  E-value=0.071  Score=53.61  Aligned_cols=110  Identities=15%  Similarity=0.180  Sum_probs=70.8

Q ss_pred             CeEEEEccChHHHHH-HHHhccCCCEEEEEcCCCCC-hhHHHhcCceec-CCHHhhcCcCCEEEEcCC---CChhh----
Q 026360           37 KTVGTVGCGRIGKLL-LQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFE-EDLDTMLPKCDIVVVNTP---LTEKT----  106 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~-A~~l~~~G~~V~~~d~~~~~-~~~~~~~g~~~~-~~l~ell~~aDiVvl~lp---~~~~t----  106 (240)
                      +++.|+|+|..|.+. |+.|+..|++|.++|..... .....+.|+... ....+.+..+|+|+..-.   .+|..    
T Consensus         5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~a~   84 (809)
T PRK14573          5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSAK   84 (809)
T ss_pred             ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHHHH
Confidence            469999999999998 99999999999999975422 222344566542 123356778999887632   22221    


Q ss_pred             ---hhcccH-HHHcc-CCC-CCEEEEcCCCcccCHHHHHHHHHhCC
Q 026360          107 ---RGMFDK-DRIAK-MKK-GVLIVNNARGAIMDTQAVVDACSSGH  146 (240)
Q Consensus       107 ---~~~i~~-~~l~~-mk~-gailIN~srg~~vd~~aL~~aL~~g~  146 (240)
                         ..++.+ +.+.. ++. ..+-|--+.|+.=...-+...|++..
T Consensus        85 ~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g  130 (809)
T PRK14573         85 SRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAK  130 (809)
T ss_pred             HCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence               122332 33333 232 35666666788888888888888744

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=94.93  E-value=0.11  Score=47.20  Aligned_cols=46  Identities=20%  Similarity=0.252  Sum_probs=38.3

Q ss_pred             CCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus        35 ~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      .|.++.|.|. |.+|..+++.++..|+++++.+++....+.++++|+
T Consensus       193 ~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~~G~  239 (393)
T cd08246         193 PGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRALGA  239 (393)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCC
Confidence            4789999997 999999999999999998888876655566666664

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=94.93  E-value=0.086  Score=48.56  Aligned_cols=65  Identities=17%  Similarity=0.251  Sum_probs=52.9

Q ss_pred             cCCCeEEEEcc----------ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCC
Q 026360           34 LEGKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        34 l~g~~vgIIG~----------G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp  101 (240)
                      ..|++|+|+|+          -.-+..+++.|...|.+|.+|||.-....   .++....+++++++++||.|++..-
T Consensus       294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  368 (388)
T PRK15057        294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDS---FFNSRLERDLATFKQQADVIISNRM  368 (388)
T ss_pred             hcCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchh---hcCCeeeCCHHHHHHhCCEEEEcCC
Confidence            47899999997          34677899999999999999998632222   3477788999999999999988764

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=94.91  E-value=0.095  Score=46.56  Aligned_cols=89  Identities=20%  Similarity=0.228  Sum_probs=58.1

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCC-CEEEEEcCCCCChhHHHhcCceec-----CCH----Hhhc--CcCCEEEEcCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFE-----EDL----DTML--PKCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G-~~V~~~d~~~~~~~~~~~~g~~~~-----~~l----~ell--~~aDiVvl~lp~  102 (240)
                      .|.++.|.|.|.+|+.+++.++..| .+|++++++......++++|+...     .++    .++.  ...|+++-++..
T Consensus       166 ~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g~  245 (345)
T cd08286         166 PGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLELTDGRGVDVVIEAVGI  245 (345)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceeccccccHHHHHHHHhCCCCCCEEEECCCC
Confidence            5889999999999999999999999 788888775544444455554211     111    1222  247777776642


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEEcC
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      . .   . ....++.++++..+|+++
T Consensus       246 ~-~---~-~~~~~~~l~~~g~~v~~g  266 (345)
T cd08286         246 P-A---T-FELCQELVAPGGHIANVG  266 (345)
T ss_pred             H-H---H-HHHHHHhccCCcEEEEec
Confidence            1 1   1 234446678888888875

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=94.89  E-value=0.088  Score=45.28  Aligned_cols=90  Identities=18%  Similarity=0.216  Sum_probs=56.9

Q ss_pred             CCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec---C--C----HHhhc--CcCCEEEEcCCC
Q 026360           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---E--D----LDTML--PKCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~---~--~----l~ell--~~aDiVvl~lp~  102 (240)
                      .|.++.|.| .|.+|..+++.++..|.+|++.+.++...+.+...|+...   .  +    +.++.  ...|+++.++..
T Consensus       136 ~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~~~  215 (320)
T cd05286         136 PGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARAAGADHVINYRDEDFVERVREITGGRGVDVVYDGVGK  215 (320)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHCCCCEEEeCCchhHHHHHHHHcCCCCeeEEEECCCc
Confidence            588999999 6999999999999999999888875544444444554211   0  1    11122  135666665541


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEEcCCC
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVNNARG  130 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN~srg  130 (240)
                           . .....++.++++..++.++..
T Consensus       216 -----~-~~~~~~~~l~~~g~~v~~g~~  237 (320)
T cd05286         216 -----D-TFEGSLDSLRPRGTLVSFGNA  237 (320)
T ss_pred             -----H-hHHHHHHhhccCcEEEEEecC
Confidence                 1 123445667777777776643

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>PRK06128 oxidoreductase; Provisional

Probab=94.88  E-value=0.091  Score=46.07  Aligned_cols=36  Identities=14%  Similarity=0.182  Sum_probs=31.4

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCC
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRV   68 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~   68 (240)
                      .+.||++.|.|. |.||+.+|+.|...|++|++..++
T Consensus        52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~   88 (300)
T PRK06128         52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLP   88 (300)
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence            478999999995 899999999999999998876553

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=94.86  E-value=0.14  Score=46.18  Aligned_cols=90  Identities=20%  Similarity=0.264  Sum_probs=59.7

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCCCChhHHHhcCceec-----CCHHh-hc----CcCCEEEEcCCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDLDT-ML----PKCDIVVVNTPLT  103 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-----~~l~e-ll----~~aDiVvl~lp~~  103 (240)
                      .|++|.|.|.|.+|..+++.+++.|.+ |++.++++.+.+.+.+.|+..+     .++.+ +.    ...|+++-++...
T Consensus       186 ~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~vld~~g~~  265 (365)
T cd08278         186 PGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINPKEEDLVAAIREITGGGVDYALDTTGVP  265 (365)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCcEEEECCCCc
Confidence            488999999999999999999999994 8888876545555555554211     12211 11    3467777776421


Q ss_pred             hhhhhcccHHHHccCCCCCEEEEcCC
Q 026360          104 EKTRGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       104 ~~t~~~i~~~~l~~mk~gailIN~sr  129 (240)
                      +    . ..+.++.+++++.+|.++.
T Consensus       266 ~----~-~~~~~~~l~~~G~~v~~g~  286 (365)
T cd08278         266 A----V-IEQAVDALAPRGTLALVGA  286 (365)
T ss_pred             H----H-HHHHHHHhccCCEEEEeCc
Confidence            1    1 2355666778888887764

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=94.85  E-value=0.14  Score=47.10  Aligned_cols=93  Identities=16%  Similarity=0.194  Sum_probs=61.3

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEE-EEcCCCCChhHHHhcCceecC-----CHHh----hc--CcCCEEEEcCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRVKMDPQLEKETGAKFEE-----DLDT----ML--PKCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~-~~d~~~~~~~~~~~~g~~~~~-----~l~e----ll--~~aDiVvl~lp~  102 (240)
                      .|.+|.|.|.|.+|..+++.++..|.+++ +.|+++...+.++++|+..+.     ++.+    +.  ...|+++-++..
T Consensus       185 ~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~Dvvid~~G~  264 (393)
T TIGR02819       185 PGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVDCAVDCVGF  264 (393)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCcEEEECCCC
Confidence            58899999999999999999999999854 456655456667777764221     2222    22  246888877753


Q ss_pred             Chh----------hhhcccHHHHccCCCCCEEEEcC
Q 026360          103 TEK----------TRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       103 ~~~----------t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      ...          ....+ .+.++.++++..++.+|
T Consensus       265 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~i~~~G  299 (393)
T TIGR02819       265 EARGHGHDGKKEAPATVL-NSLMEVTRVGGAIGIPG  299 (393)
T ss_pred             ccccccccccccchHHHH-HHHHHHhhCCCEEEEee
Confidence            210          00112 34567788888888876

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PRK06182 short chain dehydrogenase; Validated

Probab=94.84  E-value=0.063  Score=46.17  Aligned_cols=67  Identities=19%  Similarity=0.181  Sum_probs=45.4

Q ss_pred             CCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCcee----cCC---HHhhcC-------cCCEEEEc
Q 026360           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF----EED---LDTMLP-------KCDIVVVN   99 (240)
Q Consensus        35 ~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~----~~~---l~ell~-------~aDiVvl~   99 (240)
                      .++++.|.|. |.||+.+|+.|...|++|++.+++....+.....++..    +.+   ++++++       ..|+++.+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~~   81 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVNN   81 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence            4789999995 89999999999999999999988653332222223321    122   223333       57999887


Q ss_pred             CC
Q 026360          100 TP  101 (240)
Q Consensus       100 lp  101 (240)
                      ..
T Consensus        82 ag   83 (273)
T PRK06182         82 AG   83 (273)
T ss_pred             CC
Confidence            64

>PRK05866 short chain dehydrogenase; Provisional

Probab=94.82  E-value=0.056  Score=47.42  Aligned_cols=39  Identities=21%  Similarity=0.297  Sum_probs=35.0

Q ss_pred             ccccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        31 ~~~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      +..+.|+++.|.|. |.||+.+|+.|...|++|++.+++.
T Consensus        35 ~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~   74 (293)
T PRK05866         35 PVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARRE   74 (293)
T ss_pred             CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45688999999995 9999999999999999999999864

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=94.81  E-value=0.092  Score=46.72  Aligned_cols=90  Identities=27%  Similarity=0.289  Sum_probs=57.4

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCCCChhHHHhcCceec-----CC-------HHhhcC--cCCEEEE
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----ED-------LDTMLP--KCDIVVV   98 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-----~~-------l~ell~--~aDiVvl   98 (240)
                      -.|.++.|.|.|.+|..+++.++.+|.+ |++.+++....+...++|...+     .+       +.+...  ..|+|+-
T Consensus       161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d~vld  240 (343)
T cd05285         161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGPDVVIE  240 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCCCCEEEE
Confidence            4589999999999999999999999998 8777765544444444554211     01       112222  2677777


Q ss_pred             cCCCChhhhhcccHHHHccCCCCCEEEEcC
Q 026360           99 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus        99 ~lp~~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      +....+     .....++.++++..++.++
T Consensus       241 ~~g~~~-----~~~~~~~~l~~~G~~v~~g  265 (343)
T cd05285         241 CTGAES-----CIQTAIYATRPGGTVVLVG  265 (343)
T ss_pred             CCCCHH-----HHHHHHHHhhcCCEEEEEc
Confidence            654211     1234566677777777765

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK14851 hypothetical protein; Provisional

Probab=94.78  E-value=0.081  Score=52.16  Aligned_cols=37  Identities=19%  Similarity=0.163  Sum_probs=31.9

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCC
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV   68 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~   68 (240)
                      ..|++++|+|+|+|.+|..++..|...|. ++..+|.+
T Consensus        39 ~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D   76 (679)
T PRK14851         39 ERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFD   76 (679)
T ss_pred             HHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCC
Confidence            46899999999999999999999998887 46677643

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=94.74  E-value=0.049  Score=52.42  Aligned_cols=69  Identities=20%  Similarity=0.221  Sum_probs=49.6

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCC---------------------ChhHHHhcCceec------C--
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM---------------------DPQLEKETGAKFE------E--   84 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~---------------------~~~~~~~~g~~~~------~--   84 (240)
                      -.|++|.|||.|.+|-..|..|+..|++|+++++.+.                     ..+.+.+.|+...      .  
T Consensus       135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~  214 (564)
T PRK12771        135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDI  214 (564)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcC
Confidence            4699999999999999999999999999999985421                     1123445665421      1  


Q ss_pred             CHHhhcCcCCEEEEcCCC
Q 026360           85 DLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        85 ~l~ell~~aDiVvl~lp~  102 (240)
                      +.+++-...|+|++++..
T Consensus       215 ~~~~~~~~~D~Vi~AtG~  232 (564)
T PRK12771        215 TLEQLEGEFDAVFVAIGA  232 (564)
T ss_pred             CHHHHHhhCCEEEEeeCC
Confidence            233444568999998753

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=94.74  E-value=0.13  Score=50.54  Aligned_cols=69  Identities=20%  Similarity=0.247  Sum_probs=50.1

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCC---------------------hhHHHhcCceec--------CC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD---------------------PQLEKETGAKFE--------ED   85 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~---------------------~~~~~~~g~~~~--------~~   85 (240)
                      .+++|.|||.|..|...|..|+..|++|+++++.+..                     .+.....|++..        .+
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv~  271 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDIT  271 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCccC
Confidence            6899999999999999999999999999999875421                     112234455421        13


Q ss_pred             HHhhcCcCCEEEEcCCCC
Q 026360           86 LDTMLPKCDIVVVNTPLT  103 (240)
Q Consensus        86 l~ell~~aDiVvl~lp~~  103 (240)
                      ++++....|.|++++...
T Consensus       272 ~~~~~~~~DaVilAtGa~  289 (652)
T PRK12814        272 LEELQKEFDAVLLAVGAQ  289 (652)
T ss_pred             HHHHHhhcCEEEEEcCCC
Confidence            455555699999987543

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=94.73  E-value=0.079  Score=47.89  Aligned_cols=87  Identities=15%  Similarity=0.242  Sum_probs=52.3

Q ss_pred             CCCeEEEEcc-ChHHHHHHHHhcc--C-CCEEEEEcCCCCChhH--HHhcCceecCCHHhh-cCcCCEEEEcCCCChhhh
Q 026360           35 EGKTVGTVGC-GRIGKLLLQRLKP--F-NCNLLYHDRVKMDPQL--EKETGAKFEEDLDTM-LPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        35 ~g~~vgIIG~-G~iG~~~A~~l~~--~-G~~V~~~d~~~~~~~~--~~~~g~~~~~~l~el-l~~aDiVvl~lp~~~~t~  107 (240)
                      ++.+|+|||. |.+|+.+.+.|..  + ..++..+.........  +....... .++++. +.++|++++++|..    
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v-~~~~~~~~~~~Dvvf~a~p~~----   77 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTV-QDAAEFDWSQAQLAFFVAGRE----   77 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEE-EeCchhhccCCCEEEECCCHH----
Confidence            4679999995 9999999999987  4 3355555432211111  11111222 244443 37899999999933    


Q ss_pred             hcccHHHHccC-CCCCEEEEcC
Q 026360          108 GMFDKDRIAKM-KKGVLIVNNA  128 (240)
Q Consensus       108 ~~i~~~~l~~m-k~gailIN~s  128 (240)
                        +..+....+ +.|+.+||.|
T Consensus        78 --~s~~~~~~~~~~g~~VIDlS   97 (336)
T PRK08040         78 --ASAAYAEEATNAGCLVIDSS   97 (336)
T ss_pred             --HHHHHHHHHHHCCCEEEECC
Confidence              222333322 5688888888

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=94.71  E-value=0.073  Score=47.87  Aligned_cols=30  Identities=27%  Similarity=0.400  Sum_probs=24.3

Q ss_pred             eEEEEccChHHHHHHHHhccC----CCEEEEEcC
Q 026360           38 TVGTVGCGRIGKLLLQRLKPF----NCNLLYHDR   67 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~~~----G~~V~~~d~   67 (240)
                      +|||+|+|+||+.+.+.+...    +++|...+.
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd   34 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNE   34 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence            589999999999999998764    377776653

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	240
3n7u_A	351	Nad-Dependent Formate Dehydrogenase From Higher-Pla		4e-94
3naq_A	357	Apo-Form Of Nad-Dependent Formate Dehydrogenase Fro		4e-94
2j6i_A	364	Candida Boidinii Formate Dehydrogenase (Fdh) C-Term		2e-53
2fss_A	365	Candida Boidinii Formate Dehydrogenase (Fdh) K47e M		2e-53
2gug_A	401	Nad-dependent Formate Dehydrogenase From Pseudomona		4e-50
2go1_A	401	Nad-Dependent Formate Dehydrogenase From Pseudomona		5e-50
2nac_A	393	High Resolution Structures Of Holo And Apo Formate		5e-50
3fn4_A	401	Apo-form Of Nad-dependent Formate Dehydrogenase Fro		2e-47
2gsd_A	402	Nad-dependent Formate Dehydrogenase From Bacterium		2e-47
2d0i_A	333	Crystal Structure Ph0520 Protein From Pyrococcus Ho		2e-25
1ygy_A	529	Crystal Structure Of D-3-Phosphoglycerate Dehydroge		4e-24
3ddn_A	528	Crystal Structure Of Hydroxypyruvic Acid Phosphate		5e-24
2dbr_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		5e-23
2dbq_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		4e-22
1wwk_A	307	Crystal Structure Of Phosphoglycerate Dehydrogenase		4e-22
2cuk_A	311	Crystal Structure Of Tt0316 Protein From Thermus Th		7e-22
2g76_A	335	Crystal Structure Of Human 3-Phosphoglycerate Dehyd		1e-21
4g2n_A	345	Crystal Structure Of Putative D-Isomer Specific 2-H		2e-21
3k5p_A	416	Crystal Structure Of Amino Acid-Binding Act: D-Isom		1e-20
2gcg_A	330	Ternary Crystal Structure Of Human Glyoxylate Reduc		1e-19
2h1s_A	328	Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE RE		9e-19
1gdh_A	320	Crystal Structure Of A Nad-Dependent D-Glycerate De		1e-17
1j49_A	333	Insights Into Domain Closure, Substrate Specificity		1e-16
2p9g_A	410	Crystal Structure Of Serine Bound G336v,G337v Doubl		2e-16
2p9c_A	410	Crystal Structure Of Serine Bound G336v Mutant Of E		2e-16
1mx3_A	347	Crystal Structure Of Ctbp Dehydrogenase Core Holo F		3e-16
1hku_A	358	CtbpBARS: A DUAL-Function Protein Involved In Trans		3e-16
1hl3_A	358	CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK		3e-16
1psd_A	409	The Allosteric Ligand Site In The Vmax-Type Coopera		5e-16
1j4a_A	333	Insights Into Domain Closure, Substrate Specificity		6e-16
4e5m_A	329	Thermostable Phosphite Dehydrogenase E175aA176R IN		1e-15
4e5p_A	332	Thermostable Phosphite Dehydrogenase A176r Variant		1e-15
3ga0_A	358	Ctbp1BARS GLY172->glu Mutant Structure: Impairing N		3e-15
4e5k_A	329	Thermostable Phosphite Dehydrogenase In Complex Wit		3e-15
4e5n_A	330	Thermostable Phosphite Dehydrogenase In Complex Wit		4e-15
2ome_A	336	Crystal Structure Of Human Ctbp2 Dehydrogenase Comp		5e-15
2dld_A	337	D-Lactate Dehydrogenase Complexed With Nadh And Oxa		1e-14
4ebf_A	334	Semet Thermostable Phosphite Dehydrogenase Glu175-A		1e-14
1xdw_A	331	Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase		3e-14
1yba_A	410	The Active Form Of Phosphoglycerate Dehydrogenase L		3e-14
2yq4_A	343	Crystal Structure Of D-isomer Specific 2-hydroxyaci		6e-14
1sc6_A	404	Crystal Structure Of W139g D-3-Phosphoglycerate Deh		7e-14
1dxy_A	333	Structure Of D-2-Hydroxyisocaproate Dehydrogenase L		7e-13
2w2k_A	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		1e-12
2w2l_D	348	Crystal Structure Of The Holo Forms Of Rhodotorula		1e-12
2w2k_B	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		1e-12
3kb6_A	334	Crystal Structure Of D-lactate Dehydrogenase From A		2e-12
4dgs_A	340	The Crystals Structure Of Dehydrogenase From Rhizob		6e-12
3ba1_A	333	Structure Of Hydroxyphenylpyruvate Reductase From C		7e-12
3gg9_A	352	Crystal Structure Of Putative D-3-Phosphoglycerate		1e-11
3kbo_A	315	2.14 Angstrom Crystal Structure Of Putative Oxidore		2e-11
3hg7_A	324	Crystal Structure Of D-Isomer Specific 2-Hydroxyaci		6e-11
4hy3_A	365	Crystal Structure Of A Phosphoglycerate Oxidoreduct		2e-10
2ekl_A	313	Structure Of St1218 Protein From Sulfolobus Tokodai		2e-10
3evt_A	324	Crystal Structure Of Phosphoglycerate Dehydrogenase		4e-10
3oet_A	381	D-Erythronate-4-Phosphate Dehydrogenase Complexed W		3e-09
2o4c_A	380	Crystal Structure Of D-erythronate-4-phosphate Dehy		8e-09
3gvx_A	290	Crystal Structure Of Glycerate Dehydrogenase Relate		2e-06
1qp8_A	303	Crystal Structure Of A Putative Formate Dehydrogena		8e-06

>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid Thaliana In Complex With Nad And Azide Length = 351

Iteration: 1
 Score =  340 bits (872), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 153/187 (81%), Positives = 173/187 (92%)
Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILIL+RNF+PG++QV+ GEWNVAG+AYRAYDLEGKT+GTVG GRIGKLLLQRLKPF C
Sbjct: 129 MRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGC 188
Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR++M P+LEKETGAKF EDL+ MLPKCD++V+N PLTEKTRGMF+K+ I K+KK
Sbjct: 189 NLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKK 248
Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIM+ QAVVDA  SGHI GYSGDVW+PQPAPKDHPWRYMPNQAMTPH SG
Sbjct: 249 GVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSG 308
Query: 181 TTIDAQV 187
           TTIDAQ+
Sbjct: 309 TTIDAQL 315

>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabidopsis Thaliana Length = 357

Iteration: 1
 Score =  340 bits (872), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 153/187 (81%), Positives = 173/187 (92%)
Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILIL+RNF+PG++QV+ GEWNVAG+AYRAYDLEGKT+GTVG GRIGKLLLQRLKPF C
Sbjct: 135 MRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGC 194
Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR++M P+LEKETGAKF EDL+ MLPKCD++V+N PLTEKTRGMF+K+ I K+KK
Sbjct: 195 NLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKK 254
Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIM+ QAVVDA  SGHI GYSGDVW+PQPAPKDHPWRYMPNQAMTPH SG
Sbjct: 255 GVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSG 314
Query: 181 TTIDAQV 187
           TTIDAQ+
Sbjct: 315 TTIDAQL 321

>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal Mutant Length = 364

Iteration: 1
 Score =  205 bits (522), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 101/212 (47%), Positives = 139/212 (65%), Gaps = 8/212 (3%)
Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFN- 59
           M +L+LVRNF+P H Q+I+ +W VA +A  AYD+EGKT+ T+G GRIG  +L+RL PFN 
Sbjct: 129 MTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNP 188
Query: 60  CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119
             LLY+D   +    E++ GA+  E+++ ++ + DIV VN PL   T+G+ +K+ ++K K
Sbjct: 189 KELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFK 248
Query: 120 KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ-----AM 174
           KG  +VN ARGAI   + V  A  SG + GY GDVW PQPAPKDHPWR M N+     AM
Sbjct: 249 KGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAM 308
Query: 175 TPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHK 206
           TPH SGTT+DAQ    +    + +  SF + K
Sbjct: 309 TPHYSGTTLDAQ--TRYAQGTVNILESFFTGK 338

>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant Length = 365

Iteration: 1
 Score =  205 bits (521), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 98/192 (51%), Positives = 132/192 (68%), Gaps = 6/192 (3%)
Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFN- 59
           M +L+LVRNF+P H Q+I+ +W VA +A  AYD+EGKT+ T+G GRIG  +L+RL PFN 
Sbjct: 130 MTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNP 189
Query: 60  CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119
             LLY+D   +    E++ GA+  E+++ ++ + DIV VN PL   T+G+ +K+ ++K K
Sbjct: 190 KELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFK 249
Query: 120 KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ-----AM 174
           KG  +VN ARGAI   + V  A  SG + GY GDVW PQPAPKDHPWR M N+     AM
Sbjct: 250 KGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAM 309
Query: 175 TPHVSGTTIDAQ 186
           TPH SGTT+DAQ
Sbjct: 310 TPHYSGTTLDAQ 321

>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101 In Complex With Formate Length = 401

Iteration: 1
 Score =  194 bits (493), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 93/187 (49%), Positives = 116/187 (62%)
Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M IL LVRN+LP H     G WN+A     AYDLE   VGTV  GRIG  +L+RL PF+ 
Sbjct: 157 MMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDV 216
Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           +L Y DR ++   +EKE    +    + M P CD+V +N PL  +T  M + + +   K+
Sbjct: 217 HLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKR 276
Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           G  IVN ARG + D  AV  A  SG +AGY+GDVW PQPAPKDHPWR MP   MTPH+SG
Sbjct: 277 GAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG 336
Query: 181 TTIDAQV 187
           TT+ AQ 
Sbjct: 337 TTLTAQA 343

>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas Sp.101 Length = 401

Iteration: 1
 Score =  194 bits (492), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 93/187 (49%), Positives = 116/187 (62%)
Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M IL LVRN+LP H     G WN+A     AYDLE   VGTV  GRIG  +L+RL PF+ 
Sbjct: 157 MMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDV 216
Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           +L Y DR ++   +EKE    +    + M P CD+V +N PL  +T  M + + +   K+
Sbjct: 217 HLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKR 276
Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           G  IVN ARG + D  AV  A  SG +AGY+GDVW PQPAPKDHPWR MP   MTPH+SG
Sbjct: 277 GAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG 336
Query: 181 TTIDAQV 187
           TT+ AQ 
Sbjct: 337 TTLTAQA 343

>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate Dehydrogenase Length = 393

Iteration: 1
 Score =  194 bits (492), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 93/187 (49%), Positives = 116/187 (62%)
Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M IL LVRN+LP H     G WN+A     AYDLE   VGTV  GRIG  +L+RL PF+ 
Sbjct: 156 MMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDV 215
Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           +L Y DR ++   +EKE    +    + M P CD+V +N PL  +T  M + + +   K+
Sbjct: 216 HLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKR 275
Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           G  IVN ARG + D  AV  A  SG +AGY+GDVW PQPAPKDHPWR MP   MTPH+SG
Sbjct: 276 GAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG 335
Query: 181 TTIDAQV 187
           TT+ AQ 
Sbjct: 336 TTLTAQA 342

>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c-1 In Closed Conformation Length = 401

Iteration: 1
 Score =  185 bits (469), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 86/187 (45%), Positives = 118/187 (63%)
Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M +L LVRN++P H    +G WN+A    R+YD+EG  VGTV  GRIG  +L+ L PF+ 
Sbjct: 156 MMVLGLVRNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDM 215
Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           +L Y DR ++   +EKE    +    + M   CD+V +N PL  +T  M + + +   K+
Sbjct: 216 HLHYTDRHRLPEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKR 275
Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           G  +VN ARG + D  A+V A  SG +AGY+GDVW PQPAP DHPWR MP+  MTPH+SG
Sbjct: 276 GAYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMPHNGMTPHISG 335
Query: 181 TTIDAQV 187
           T++ AQ 
Sbjct: 336 TSLSAQT 342

>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c2 In Complex With Nad And Azide Length = 402

Iteration: 1
 Score =  185 bits (469), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 86/187 (45%), Positives = 118/187 (63%)
Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M +L LVRN++P H    +G WN+A    R+YD+EG  VGTV  GRIG  +L+ L PF+ 
Sbjct: 157 MMVLGLVRNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDM 216
Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           +L Y DR ++   +EKE    +    + M   CD+V +N PL  +T  M + + +   K+
Sbjct: 217 HLHYTDRHRLPEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKR 276
Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           G  +VN ARG + D  A+V A  SG +AGY+GDVW PQPAP DHPWR MP+  MTPH+SG
Sbjct: 277 GAYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMPHNGMTPHISG 336
Query: 181 TTIDAQV 187
           T++ AQ 
Sbjct: 337 TSLSAQT 343

>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333

Iteration: 1
 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 105/196 (53%), Gaps = 7/196 (3%)
Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAY----RAYDLEGKTVGTVGCGRIGKLLLQRLKPF 58
           I+ L+R        +  GEW      +    R   L GK VG +G G IGK + +RL PF
Sbjct: 109 IINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPF 168
Query: 59  NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKM 118
              L Y  R +    +EKE  A++  D+D +L K DIV++  PLT  T  + +++R+ K+
Sbjct: 169 GVKLYYWSRHR-KVNVEKELKARYM-DIDELLEKSDIVILALPLTRDTYHIINEERVKKL 226
Query: 119 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHV 178
           + G  +VN  RGA++D +AV +A   G + GY+ DV+  +P  +   ++Y     +TPH 
Sbjct: 227 E-GKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHY 285
Query: 179 SGTTIDAQVIVHFFPV 194
           +G  ++AQ  V F  V
Sbjct: 286 AGLALEAQEDVGFRAV 301

>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From Mycobacterium Tuberculosis Length = 529

Iteration: 1
 Score =  107 bits (268), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 91/159 (57%), Gaps = 3/159 (1%)
Query: 28  AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLD 87
           ++   ++ GKTVG VG GRIG+L+ QR+  F   ++ +D   + P    + G +    LD
Sbjct: 134 SFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDP-YVSPARAAQLGIELLS-LD 191
Query: 88  TMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 147
            +L + D + V+ P T +T G+ DK+ +AK K GV+IVN ARG ++D  A+ DA + GH+
Sbjct: 192 DLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHV 251
Query: 148 AGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQ 186
                DV+  +P   D P   +    +TPH+  +T +AQ
Sbjct: 252 RAAGLDVFATEPC-TDSPLFELAQVVVTPHLGASTAEAQ 289

>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound D-3- Phosphoglycerate Dehydrogenase In Mycobacterium Tuberculosis Length = 528

Iteration: 1
 Score =  107 bits (267), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 91/159 (57%), Gaps = 3/159 (1%)
Query: 28  AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLD 87
           ++   ++ GKTVG VG GRIG+L+ QR+  F   ++ +D   + P    + G +    LD
Sbjct: 133 SFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDP-YVSPARAAQLGIELLS-LD 190
Query: 88  TMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 147
            +L + D + V+ P T +T G+ DK+ +AK K GV+IVN ARG ++D  A+ DA + GH+
Sbjct: 191 DLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHV 250
Query: 148 AGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQ 186
                DV+  +P   D P   +    +TPH+  +T +AQ
Sbjct: 251 RAAGLDVFATEPC-TDSPLFELAQVVVTPHLGASTAEAQ 288

>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1) Length = 334

Iteration: 1
 Score =  104 bits (259), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/184 (35%), Positives = 110/184 (59%), Gaps = 8/184 (4%)
Query: 8   RNFLPGHHQVISGEWNVAGVAYR-----AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           R+ + G   V SGEW   GVA+       YD+ GKT+G +G GRIG+ + +R K FN  +
Sbjct: 117 RHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRI 176
Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           LY+ R + + ++E+E  A+F+  L+ +L + D VV+  PLT +T  + +++R+  MKK  
Sbjct: 177 LYYSRTRKE-EVERELNAEFK-PLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTA 234
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           +++N ARG ++DT A+V A   G IAG   DV+  +P   +  ++ + N  +TPH+   +
Sbjct: 235 ILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFK-LDNVVLTPHIGSAS 293
Query: 183 IDAQ 186
             A+
Sbjct: 294 FGAR 297

>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41) Length = 334

Iteration: 1
 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/184 (35%), Positives = 109/184 (59%), Gaps = 8/184 (4%)
Query: 8   RNFLPGHHQVISGEWNVAGVAYR-----AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           R+ + G   V SGEW   GVA+       YD+ GKT+G +G GRIG+ + +R K FN  +
Sbjct: 117 RHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNXRI 176
Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           LY+ R + + ++E+E  A+F+  L+ +L + D VV+  PLT +T  + +++R+   KK  
Sbjct: 177 LYYSRTRKE-EVERELNAEFK-PLEDLLRESDFVVLAVPLTRETYHLINEERLKLXKKTA 234
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           +++N ARG ++DT A+V A   G IAG   DV+  +P   +  ++ + N  +TPH+   +
Sbjct: 235 ILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFK-LDNVVLTPHIGSAS 293
Query: 183 IDAQ 186
             A+
Sbjct: 294 FGAR 297

>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307

Iteration: 1
 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 59/154 (38%), Positives = 93/154 (60%), Gaps = 2/154 (1%)
Query: 33  DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 92
           +LEGKT+G +G GRIG  + +       N+L +D    + +  KE   KF  DL+T+L +
Sbjct: 139 ELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYP-NEERAKEVNGKFV-DLETLLKE 196
Query: 93  CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 152
            D+V ++ PL E T  + +++R+  MKK  +++N +RG ++DT A+V A   G IAG   
Sbjct: 197 SDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGL 256
Query: 153 DVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQ 186
           DV+  +P PKDHP     N  +TPH+  +T++AQ
Sbjct: 257 DVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQ 290

>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus Thermophilus Hb8 Length = 311

Iteration: 1
 Score =  100 bits (249), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 83/138 (60%), Gaps = 8/138 (5%)
Query: 42  VGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTP 101
           VG GRIG+ + +R   F   ++YH R        K     F   L+ +L + D+V ++TP
Sbjct: 150 VGMGRIGQAVAKRALAFGMRVVYHARTP------KPLPYPFL-SLEELLKEADVVSLHTP 202
Query: 102 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP 161
           LT +T  + +++R+  MK+G +++N ARGA++DT+A+V+A   GH+ G   DV +P+P P
Sbjct: 203 LTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEAL-RGHLFGAGLDVTDPEPLP 261
Query: 162 KDHPWRYMPNQAMTPHVS 179
             HP   +PN  +TPH+ 
Sbjct: 262 PGHPLYALPNAVITPHIG 279

>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase Length = 335

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 97/184 (52%), Gaps = 5/184 (2%)
Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           I+ L R        +  G+W      +   +L GKT+G +G GRIG+ +  R++ F    
Sbjct: 134 IMCLARQIPQATASMKDGKWERK--KFMGTELNGKTLGILGLGRIGREVATRMQSFGMKT 191
Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           + +D + + P++    G + +  L+ + P CD + V+TPL   T G+ + +  A+ KKGV
Sbjct: 192 IGYDPI-ISPEVSASFGVQ-QLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGV 249
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
            +VN ARG I+D  A++ A  SG  AG + DV+  +P P+D       N    PH+  +T
Sbjct: 250 RVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRDRALVDHENVISCPHLGAST 308
Query: 183 IDAQ 186
            +AQ
Sbjct: 309 KEAQ 312

>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. Js6 66 Length = 345

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 91/167 (54%), Gaps = 4/167 (2%)
Query: 17  VISGEWNVAG-VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE 75
           V SG W   G        L G+ +G  G GRIG+ +  R + F   + YH+R ++   LE
Sbjct: 153 VRSGSWPGWGPTQLLGXGLTGRRLGIFGXGRIGRAIATRARGFGLAIHYHNRTRLSHALE 212
Query: 76  KETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDT 135
           +  GA + + LD++L   DI ++  P   + +G  D DRIAK+ +G +++N +RG +++ 
Sbjct: 213 E--GAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLIND 270
Query: 136 QAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
            A+++A  S H+     DV+  +PA  D  +R + N  +TPH+   T
Sbjct: 271 DALIEALRSKHLFAAGLDVFANEPA-IDPRYRSLDNIFLTPHIGSAT 316

>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain From Brucella Melitensis Length = 416

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 96/188 (51%), Gaps = 10/188 (5%)
Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           I++L+R   P      +G W    +  R  ++ GKT+G VG G IG  +    +     +
Sbjct: 125 IIMLMRRIFPRSVSAHAGGWEKTAIGSR--EVRGKTLGIVGYGNIGSQVGNLAESLGMTV 182
Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
            Y+D      +L+     K    LD +L   D+V ++ P ++ T  +  + ++ KMKKG 
Sbjct: 183 RYYD---TSDKLQYGN-VKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGA 238
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDH----PWRYMPNQAMTPHV 178
            ++NNARG+ +D +A+      GH+AG + DV+  +PA        P + + N  +TPH+
Sbjct: 239 FLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHI 298
Query: 179 SGTTIDAQ 186
            G+T +AQ
Sbjct: 299 GGSTEEAQ 306

>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate ReductaseHYDROXYPYRUVATE REDUCTASE Length = 330

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 81/156 (51%), Gaps = 9/156 (5%)
Query: 31  AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDT- 88
            Y L   TVG +G GRIG+ + +RLKPF     LY  R     Q   E  A+F+ +  + 
Sbjct: 150 GYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGR-----QPRPEEAAEFQAEFVST 204
Query: 89  --MLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH 146
             +  + D +VV   LT  T G+ +KD   KMK+  + +N +RG +++   +  A +SG 
Sbjct: 205 PELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGK 264
Query: 147 IAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           IA    DV +P+P P +HP   + N  + PH+   T
Sbjct: 265 IAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSAT 300

>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO Sapiens Length = 328

Iteration: 1
 Score = 90.1 bits (222), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 80/156 (51%), Gaps = 9/156 (5%)
Query: 31  AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDT- 88
            Y L   TVG +G GRIG+ + +RLKPF     LY  R     Q   E  A+F+ +  + 
Sbjct: 148 GYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGR-----QPRPEEAAEFQAEFVST 202
Query: 89  --MLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH 146
             +  + D +VV   LT  T G+ +KD   K K+  + +N +RG +++   +  A +SG 
Sbjct: 203 PELAAQSDFIVVACSLTPATEGLCNKDFFQKXKETAVFINISRGDVVNQDDLYQALASGK 262
Query: 147 IAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           IA    DV +P+P P +HP   + N  + PH+   T
Sbjct: 263 IAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSAT 298

>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 79/153 (51%), Gaps = 1/153 (0%)
Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
           L+ KT+G  G G IG+ L +R + F+ ++ Y D  +     E    A F + LD++L   
Sbjct: 144 LDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVS 203
Query: 94  DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
               +N P T +TR  F+K  I  + +G ++VN ARG ++D + VV A  +G +A    D
Sbjct: 204 QFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFD 263
Query: 154 VWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQ 186
           V+  +P   +  +  +PN  + PH+      A+
Sbjct: 264 VFAGEPNINEGYYD-LPNTFLFPHIGSAATQAR 295

>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 86/166 (51%), Gaps = 16/166 (9%)
Query: 33  DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 92
           ++  + VG VG G IG++ +Q ++ F   ++ +D  + +P+LEK+    + + LD +  +
Sbjct: 143 EVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR-NPELEKK--GYYVDSLDDLYKQ 199
Query: 93  CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 152
            D++ ++ P       M + + IAKMK+ V+IVN +RG ++DT AV+    SG I GY+ 
Sbjct: 200 ADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAM 259
Query: 153 DVWNPQPAPKDHPWR-------------YMPNQAMTPHVSGTTIDA 185
           DV+  +    +  W                PN  +TPH +  T  A
Sbjct: 260 DVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPHTAFYTTHA 305

>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 85/171 (49%), Gaps = 10/171 (5%)
Query: 20  GEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG 79
           G WN   +A  +++  GK +G +G G IG  L    +     + ++D     P L   T 
Sbjct: 137 GVWN--KLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP-LGNATQ 193
Query: 80  AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVV 139
            +   DL  M    D+V ++ P    T+ M     I+ MK G L++N +RG ++D  A+ 
Sbjct: 194 VQHLSDLLNM---SDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALA 250
Query: 140 DACSSGHIAGYSGDVWNPQPA----PKDHPWRYMPNQAMTPHVSGTTIDAQ 186
           DA +S H+AG + DV+  +PA    P   P     N  +TPH+ G+T +AQ
Sbjct: 251 DALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQ 301

>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 85/171 (49%), Gaps = 10/171 (5%)
Query: 20  GEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG 79
           G WN   +A  +++  GK +G +G G IG  L    +     + ++D     P L   T 
Sbjct: 137 GVWN--KLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP-LGNATQ 193
Query: 80  AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVV 139
            +   DL  M    D+V ++ P    T+ M     I+ MK G L++N +RG ++D  A+ 
Sbjct: 194 VQHLSDLLNM---SDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALA 250
Query: 140 DACSSGHIAGYSGDVWNPQPA----PKDHPWRYMPNQAMTPHVSGTTIDAQ 186
           DA +S H+AG + DV+  +PA    P   P     N  +TPH+ G+T +AQ
Sbjct: 251 DALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQ 301

>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 79/154 (51%), Gaps = 2/154 (1%)
Query: 27  VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDL 86
           VA  A  + G+T+G +G GR+G+ +  R K F  N+L++D    D  +E+  G +    L
Sbjct: 159 VASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDG-VERALGLQRVSTL 217
Query: 87  DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH 146
             +L   D V ++  L E    + +   + +M++G  +VN ARG ++D +A+  A   G 
Sbjct: 218 QDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGR 277
Query: 147 IAGYSGDVWNPQP-APKDHPWRYMPNQAMTPHVS 179
           I G + DV   +P +    P +  PN   TPH +
Sbjct: 278 IRGAALDVHESEPFSFSQGPLKDAPNLICTPHAA 311

>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 79/154 (51%), Gaps = 2/154 (1%)
Query: 27  VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDL 86
           VA  A  + G+T+G +G GR+G+ +  R K F  N+L++D    D  +E+  G +    L
Sbjct: 162 VASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDG-IERALGLQRVSTL 220
Query: 87  DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH 146
             +L   D V ++  L E    + +   + +M++G  +VN ARG ++D +A+  A   G 
Sbjct: 221 QDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGR 280
Query: 147 IAGYSGDVWNPQP-APKDHPWRYMPNQAMTPHVS 179
           I G + DV   +P +    P +  PN   TPH +
Sbjct: 281 IRGAALDVHESEPFSFSQGPLKDAPNLICTPHAA 314

>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 79/154 (51%), Gaps = 2/154 (1%)
Query: 27  VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDL 86
           VA  A  + G+T+G +G GR+G+ +  R K F  N+L++D    D  +E+  G +    L
Sbjct: 162 VASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDG-IERALGLQRVSTL 220
Query: 87  DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH 146
             +L   D V ++  L E    + +   + +M++G  +VN ARG ++D +A+  A   G 
Sbjct: 221 QDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGR 280
Query: 147 IAGYSGDVWNPQP-APKDHPWRYMPNQAMTPHVS 179
           I G + DV   +P +    P +  PN   TPH +
Sbjct: 281 IRGAALDVHESEPFSFSQGPLKDAPNLICTPHAA 314

>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative Enzyme Phosphoglycerate Dehydrogenase Length = 409

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 10/171 (5%)
Query: 20  GEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG 79
           G WN   +A  +++  GK +G +G G IG  L    +     + ++D     P L   T 
Sbjct: 136 GVWN--KLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP-LGNATQ 192
Query: 80  AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVV 139
            +   DL  M    D+V ++ P    T+ M     I+ MK G L++N +RG ++D  A+ 
Sbjct: 193 VQHLSDLLNM---SDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALC 249
Query: 140 DACSSGHIAGYSGDVWNPQPAPKDHPWRY----MPNQAMTPHVSGTTIDAQ 186
           DA +S H+AG + DV+  +PA    P+        N  +TPH+ G+T +AQ
Sbjct: 250 DALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQ 300

>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score = 80.9 bits (198), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 77/135 (57%), Gaps = 3/135 (2%)
Query: 33  DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 92
           ++  + VG VG G IG++ +Q ++ F   ++ +D  + +P+LEK+    + + LD +  +
Sbjct: 143 EVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR-NPELEKK--GYYVDSLDDLYKQ 199
Query: 93  CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 152
            D++ ++ P       M + + IAKMK+ V+IVN +RG ++DT AV+    SG I GY+ 
Sbjct: 200 ADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAM 259
Query: 153 DVWNPQPAPKDHPWR 167
           DV+  +    +  W 
Sbjct: 260 DVYEGEVGIFNEDWE 274

>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX WITH NADP Length = 329

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 9/176 (5%)
Query: 17  VISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK 76
           V SG++      +    L+  TVG +G G IG  +  RL+ +   L YH R  +D Q E+
Sbjct: 126 VRSGQFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHARKALDTQTEQ 185
Query: 77  ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQ 136
             G + +     +    D +++  PL   T  + + + +A ++ G L+VN  RG+++D  
Sbjct: 186 RLGLR-QVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEA 244
Query: 137 AVVDACSSGHIAGYSGDVWN-------PQPAPKDHPWRYMPNQAMTPHVSGTTIDA 185
           AV+ A   G + GY+ DV+         +P   D      PN   TPH+ G+ + A
Sbjct: 245 AVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHI-GSAVRA 299

>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In Complex With Nad Length = 332

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 9/176 (5%)
Query: 17  VISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK 76
           V SG++      +    L+  TVG +G G IG  +  RL+ +   L YH R  +D Q E+
Sbjct: 126 VRSGQFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHARKALDTQTEQ 185
Query: 77  ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQ 136
             G + +     +    D +++  PL   T  + + + +A ++ G L+VN  RG+++D  
Sbjct: 186 RLGLR-QVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEA 244
Query: 137 AVVDACSSGHIAGYSGDVWN-------PQPAPKDHPWRYMPNQAMTPHVSGTTIDA 185
           AV+ A   G + GY+ DV+         +P   D      PN   TPH+ G+ + A
Sbjct: 245 AVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHI-GSAVRA 299

>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 78/154 (50%), Gaps = 2/154 (1%)
Query: 27  VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDL 86
           VA  A  + G+T+G +G  R+G+ +  R K F  N+L++D    D  +E+  G +    L
Sbjct: 162 VASGAARIRGETLGIIGLERVGQAVALRAKAFGFNVLFYDPYLSDG-IERALGLQRVSTL 220
Query: 87  DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH 146
             +L   D V ++  L E    + +   + +M++G  +VN ARG ++D +A+  A   G 
Sbjct: 221 QDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGR 280
Query: 147 IAGYSGDVWNPQP-APKDHPWRYMPNQAMTPHVS 179
           I G + DV   +P +    P +  PN   TPH +
Sbjct: 281 IRGAALDVHESEPFSFSQGPLKDAPNLICTPHAA 314

>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad And Sulfite Length = 329

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 9/159 (5%)
Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
           L+  TVG +G G IG  +  RL+ +   L YH+   +D Q E+  G + +     +    
Sbjct: 143 LDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLR-QVACSELFASS 201
Query: 94  DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
           D +++  PL   T  + + + +A ++ G L+VN  RG+++D  AV+ A   G + GY+ D
Sbjct: 202 DFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAAD 261
Query: 154 VWN-------PQPAPKDHPWRYMPNQAMTPHVSGTTIDA 185
           V+         +P   D      PN   TPH+ G+ + A
Sbjct: 262 VFEMEDWARADRPQQIDPALLAHPNTLFTPHI-GSAVRA 299

>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad Length = 330

Iteration: 1
 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 9/159 (5%)
Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
           L+  TVG +G G IG  +  RL+ +   L YH+   +D Q E+  G + +     +    
Sbjct: 143 LDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLR-QVACSELFASS 201
Query: 94  DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
           D +++  PL   T  + + + +A ++ G L+VN  RG+++D  AV+ A   G + GY+ D
Sbjct: 202 DFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAAD 261
Query: 154 VWN-------PQPAPKDHPWRYMPNQAMTPHVSGTTIDA 185
           V+         +P   D      PN   TPH+ G+ + A
Sbjct: 262 VFEMEDWARADRPQQIDPALLAHPNTLFTPHI-GSAVRA 299

>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 79/154 (51%), Gaps = 2/154 (1%)
Query: 27  VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDL 86
           VA  A  + G+T+G +G GR G+ +  R K F  +++++D    D  +E+  G +    L
Sbjct: 143 VASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDG-IERSLGVQRVYTL 201
Query: 87  DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH 146
             +L + D V ++  L E    + +   I +M++G  +VN ARG ++D +A+  A   G 
Sbjct: 202 QDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGR 261
Query: 147 IAGYSGDVWNPQP-APKDHPWRYMPNQAMTPHVS 179
           I G + DV   +P +    P +  PN   TPH +
Sbjct: 262 IRGAALDVHESEPFSFAQGPLKDAPNLICTPHTA 295

>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate Length = 337

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 94/183 (51%), Gaps = 18/183 (9%)
Query: 33  DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 92
           ++  + VG VG G IG++ ++ ++ F   ++ +D  K +P+LEK+    + + LD +  +
Sbjct: 143 EVRDQVVGVVGTGHIGQVFMRIMEGFGAKVIAYDIFK-NPELEKK--GYYVDSLDDLYKQ 199
Query: 93  CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 152
            D++ ++ P       M +   IA+MK GV+IVN +RG ++DT AV+    SG I G+  
Sbjct: 200 ADVISLHVPDVPANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIRGLDSGKIFGFVM 259
Query: 153 D-------VWNPQPAPKDHPWRYM------PNQAMTPHVSGTTIDA--QVIVHFFPVFMR 197
           D       V+N     K+ P + +      PN  +TPH +  T  A   ++V  F   ++
Sbjct: 260 DTYEDEVGVFNKDWEGKEFPDKRLADLIDRPNVLVTPHTAFYTTHAVRNMVVKAFNNNLK 319
Query: 198 LFT 200
           L  
Sbjct: 320 LIN 322

>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant Length = 334

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 82/176 (46%), Gaps = 9/176 (5%)
Query: 17  VISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK 76
           V SG++      +    L+  TVG +G G IG     RL+ +   L YH    +D Q E+
Sbjct: 127 VRSGQFRGWQPRFYGTGLDNATVGFLGXGAIGLAXADRLQGWGATLQYHAAKALDTQTEQ 186
Query: 77  ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQ 136
             G + +     +    D +++  PL   T  + + + +A ++ G L+VN  RG+++D  
Sbjct: 187 RLGLR-QVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEA 245
Query: 137 AVVDACSSGHIAGYSGDVWNPQ-------PAPKDHPWRYMPNQAMTPHVSGTTIDA 185
           AV+ A   G + GY+ DV+  +       P   D      PN   TPH+ G+ + A
Sbjct: 246 AVLAALERGQLGGYAADVFEXEDWARADRPQQIDPALLAHPNTLFTPHI-GSAVRA 300

>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From Acidaminococcus Fermentans Length = 331

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 81/162 (50%), Gaps = 18/162 (11%)
Query: 38  TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVV 97
           TVG VG GRIG++  Q        ++  D  ++    +  T    +  LD +L K DI+ 
Sbjct: 148 TVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKGIEDYCT----QVSLDEVLEKSDIIT 203
Query: 98  VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP 157
           ++ P  ++   +  +D + KMK G ++VN ARG ++DT+AV++A  SG + GY  DV + 
Sbjct: 204 IHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDG 263
Query: 158 QPA--PKDHPWRYM------------PNQAMTPHVSGTTIDA 185
           + +   KD   + +            P   +TPH+   T +A
Sbjct: 264 EASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEA 305

>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 10/171 (5%)
Query: 20  GEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG 79
           G WN   +A  +++  GK +G +G G IG  L    +     + ++D   ++ +L     
Sbjct: 137 GVWN--KLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGXYVYFYD---IENKLPLGNA 191
Query: 80  AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVV 139
            + +  L  +L   D+V ++ P    T+       I+  K G L++N +RG ++D  A+ 
Sbjct: 192 TQVQH-LSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPALC 250
Query: 140 DACSSGHIAGYSGDVWNPQPAPKDHPWRY----MPNQAMTPHVSGTTIDAQ 186
           DA +S H+AG + DV+  +PA    P+        N  +TPH+ G+T +AQ
Sbjct: 251 DALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQ 301

>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid Dehydrogenase From Lactobacillus Delbrueckii Ssp. Bulgaricus Length = 343

Iteration: 1
 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 20/169 (11%)
Query: 22  WNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK 81
           W    ++   Y+L   TVG +G G IG  + +        ++ +D V  +P+ E      
Sbjct: 137 WPSNLISNEIYNL---TVGLIGVGHIGSAVAEIFSAMGAKVIAYD-VAYNPEFEPFLTYT 192
Query: 82  FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDA 141
              D DT+L + DIV ++TPL   T  M  + ++ +MKK   ++N ARG ++DT A++ A
Sbjct: 193 ---DFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKA 249
Query: 142 CSSGHIAGYSGDVWNPQPA------------PKDH-PWRYMPNQAMTPH 177
              G IAG   D    + +            P+D+     MPN  +TPH
Sbjct: 250 LQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITPH 298

>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate Dehydrogenase Complexed With Nad+ Length = 404

Iteration: 1
 Score = 73.9 bits (180), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 82/164 (50%), Gaps = 8/164 (4%)
Query: 27  VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDL 86
           +A  +++  GK +G +G G IG  L    +     + ++D   ++ +L      + +  L
Sbjct: 136 LAAGSFEARGKKLGIIGYGHIGTQLGILAESLGXYVYFYD---IENKLPLGNATQVQH-L 191
Query: 87  DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH 146
             +L   D+V ++ P    T+       I+  K G L++N +RG ++D  A+ DA +S H
Sbjct: 192 SDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDIPALADALASKH 251
Query: 147 IAGYSGDVWNPQPA----PKDHPWRYMPNQAMTPHVSGTTIDAQ 186
           +AG + DV+  +PA    P   P     N  +TPH+ G+T +AQ
Sbjct: 252 LAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQ 295

>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase Length = 333

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 102/221 (46%), Gaps = 24/221 (10%)
Query: 4   LILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL 63
           L L+RN      Q+ +G++  AG  +   +L  +TVG +G G IG++ ++  K F   ++
Sbjct: 114 LYLLRNMGKVQAQLQAGDYEKAGT-FIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVI 172
Query: 64  YHDRVKMDPQLEKETGAKFEE-DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
            +D   M     K     F+   L+ +  + D++ ++ P  E+   + ++     MK G 
Sbjct: 173 AYDPYPM-----KGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGA 227
Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP----------KDHPWRY---M 169
           +++N AR  ++DTQA++    SG +AG   D +  +             KD  W     M
Sbjct: 228 IVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGM 287
Query: 170 PNQAMTPHVSGTTIDAQVIVHFFPVF-MRLFTSFLSHKSNS 209
           PN  ++PH++  T   +  VH    F ++    FL+    S
Sbjct: 288 PNVVLSPHIAYYT---ETAVHNMVYFSLQHLVDFLTKGETS 325

>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a. Length = 348

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 2/159 (1%)
Query: 27  VAYRAYDLEGKTVGTVGCGRIGKLLLQR-LKPFNCNLLYHDRVKMDPQLEKETGAKFEED 85
           +   A++  G  +G VG G I K + ++ +      L+Y+D    D + EK  GA+  + 
Sbjct: 154 IGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDS 213
Query: 86  LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 145
           L+ +  + D V V+ P  + T  + D+   A MK G  IVN ARG ++   A++ A  SG
Sbjct: 214 LEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSG 273
Query: 146 HIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTID 184
            +     DV   +P         M +  +T H+ G  I+
Sbjct: 274 KLLSAGLDVHEFEPQVSKELIE-MKHVTLTTHIGGVAIE 311

>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 2.5a Length = 348

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 2/159 (1%)
Query: 27  VAYRAYDLEGKTVGTVGCGRIGKLLLQR-LKPFNCNLLYHDRVKMDPQLEKETGAKFEED 85
           +   A++  G  +G VG G I K + ++ +      L+Y+D    D + EK  GA+  + 
Sbjct: 154 IGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDS 213
Query: 86  LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 145
           L+ +  + D V V+ P  + T  + D+   A MK G  IVN ARG ++   A++ A  SG
Sbjct: 214 LEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSG 273
Query: 146 HIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTID 184
            +     DV   +P         M +  +T H+ G  I+
Sbjct: 274 KLLSAGLDVHEFEPQVSKELIE-MKHVTLTTHIGGVAIE 311

>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a Length = 348

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 2/159 (1%)
Query: 27  VAYRAYDLEGKTVGTVGCGRIGKLLLQR-LKPFNCNLLYHDRVKMDPQLEKETGAKFEED 85
           +   A++  G  +G VG G I K + ++ +      L+Y+D    D + EK  GA+  + 
Sbjct: 154 IGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDS 213
Query: 86  LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG 145
           L+ +  + D V V+ P  + T  + D+   A MK G  IVN ARG ++   A++ A  SG
Sbjct: 214 LEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSG 273
Query: 146 HIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTID 184
            +     DV   +P         M +  +T H+ G  I+
Sbjct: 274 KLLSAGLDVHEFEPNVSKELIE-MKHVTLTTHIGGVAIE 311

>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 69/128 (53%), Gaps = 3/128 (2%)
Query: 31  AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML 90
           A +L   T+G +G GRIG  +      F   +L +D VK +    KE G  +   LD +L
Sbjct: 136 ARELNRLTLGVIGTGRIGSRVAXYGLAFGXKVLCYDVVKREDL--KEKGCVYT-SLDELL 192
Query: 91  PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY 150
            + D++ ++ P T++T    +++RI+  K GV ++N ARG ++DT A+  A   G  +G 
Sbjct: 193 KESDVISLHVPYTKETHHXINEERISLXKDGVYLINTARGKVVDTDALYRAYQRGKFSGL 252
Query: 151 SGDVWNPQ 158
             DV+  +
Sbjct: 253 GLDVFEDE 260

>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium Meliloti Length = 340

Iteration: 1
 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 88/206 (42%), Gaps = 11/206 (5%)
Query: 4   LILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL 63
           L ++R    G   V  G W         +  +GK +G +G G+IG+ L  R + F  ++ 
Sbjct: 139 LAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGXSVR 198
Query: 64  YHDRVKMD--PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
           Y +R  +     +  ++      D        D++ V    +  T+ + D   +  +   
Sbjct: 199 YWNRSTLSGVDWIAHQSPVDLARD-------SDVLAVCVAASAATQNIVDASLLQALGPE 251
Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT 181
            ++VN ARG ++D  A+++A  SG IAG   DV+  +PA +   +   PN  + PH    
Sbjct: 252 GIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSE-FHTTPNTVLXPHQGSA 310
Query: 182 TIDAQVIVHFFPVFMRLFTSFLSHKS 207
           T++ +       V   L   F   K+
Sbjct: 311 TVETRXAXGKL-VLANLAAHFAGEKA 335

>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333

Iteration: 1
 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 86/188 (45%), Gaps = 9/188 (4%)
Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           IL ++R        V  G W   G         GK VG +G GRIG  + +R + F+C +
Sbjct: 132 ILAVLRRICECDKYVRRGAWKF-GDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPI 190
Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKM-KKG 121
            Y  R K     +  T   +   +  +    DI+VV  PLT +T  + +++ I  +  KG
Sbjct: 191 SYFSRSK-----KPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKG 245
Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT 181
           VLI N  RG  +D   +V A   G + G   DV+  +P   +  +  + N  + PHV   
Sbjct: 246 VLI-NIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFG-LENVVLLPHVGSG 303
Query: 182 TIDAQVIV 189
           T++ + ++
Sbjct: 304 TVETRKVM 311

>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate Dehydrogenase Oxidoreductase From Ralstonia Solanacearum Length = 352

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 71/146 (48%), Gaps = 1/146 (0%)
Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
           L+G+T+G  G G+IG+L+    + F  N+L   R +   +  +  G    E  D +  + 
Sbjct: 158 LKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGR-ENSKERARADGFAVAESKDALFEQS 216
Query: 94  DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
           D++ V+  L ++TR +     + +MK   L VN +R  +++   +V A + G     + D
Sbjct: 217 DVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAID 276
Query: 154 VWNPQPAPKDHPWRYMPNQAMTPHVS 179
           V+  +P  + H    M N   TPH+ 
Sbjct: 277 VFETEPILQGHTLLRMENCICTPHIG 302

>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase (ycdw) From Salmonella Typhimurium In Complex With Nadp Length = 315

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 6/159 (3%)
Query: 32  YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFEEDLDTML 90
           Y  E  +VG  G G +G  + + L+ +   L    R +   P +E   G    E+L   L
Sbjct: 135 YTREEFSVGIXGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVG---REELRAFL 191
Query: 91  PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY 150
            +  +++   P T +T G+ + + + ++  G  ++N ARG  +    ++ A  SG + G 
Sbjct: 192 NQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGA 251
Query: 151 SGDVWNPQPAPKDHP-WRYMPNQAMTPHVSGTTIDAQVI 188
             DV++ +P P++ P WR+ P  A TPH++  T  A+ I
Sbjct: 252 XLDVFSQEPLPQESPLWRH-PRVAXTPHIAAVTRPAEAI 289

>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid Dehydrogenase Family Protein From Aeromonas Salmonicida Subsp. Salmonicida A449 Length = 324

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 16/175 (9%)
Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE-----DLDT 88
           L+G+T+  +G G IG+ +    K F   +L   R            A F++      L+ 
Sbjct: 138 LKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSR-------SGRERAGFDQVYQLPALNK 190
Query: 89  MLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA 148
           ML + D++V   P T +T  +F   R    K G ++ N  RG  ++   ++ A  +G + 
Sbjct: 191 MLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLG 250
Query: 149 GYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFL 203
               DV+  +P P D P    PN  +TPH S  +    V      +F+R +  F+
Sbjct: 251 MAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYSFPDDVA----QIFVRNYIRFI 301

>pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase From Rhizobium Etli Length = 365

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 4/160 (2%)
Query: 22  WNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK 81
           W   G A  A  + G  +G VG G +GK L + L  F   +   D       LE E G +
Sbjct: 163 WGGEGNAS-ARLIAGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPRSXLE-ENGVE 220
Query: 82  FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDA 141
               L+ +L K D + V   +T + +     +  +  ++G   +  +R  ++D  A+  A
Sbjct: 221 -PASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSXRRGAAFILLSRADVVDFDALXAA 279
Query: 142 CSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT 181
            SSGHI   S DV+  +P P DHP R +     + H +G 
Sbjct: 280 VSSGHIVAAS-DVYPEEPLPLDHPVRSLKGFIRSAHRAGA 318

>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii Length = 313

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 77/156 (49%), Gaps = 4/156 (2%)
Query: 33  DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK 92
           +L GKT+G VG GRIG  +          +L +D + +  + EK         L+ +L  
Sbjct: 139 ELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREKAEKINAKAV--SLEELLKN 196
Query: 93  CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 152
            D++ ++  +++  + + D  +   MK  V+IVN +R   ++ +A++D    G +  Y+ 
Sbjct: 197 SDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYAT 256
Query: 153 DVWNPQPAPKDHPWRYMPNQ--AMTPHVSGTTIDAQ 186
           DV+  +P  ++     + ++   +T H+   T +AQ
Sbjct: 257 DVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQ 292

>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Lactobacillus Plantarum Length = 324

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 10/114 (8%)
Query: 94  DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
           + +V   PLT  T  +F  +   + K+  +++N  RG  +DT A++ A     ++  + D
Sbjct: 193 NFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALD 252
Query: 154 VWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQVIVHF----FPVFMRLFTSFL 203
           V  P+P P DHP     +  +TPH+SG       I HF    FP+F   F  F+
Sbjct: 253 VTEPEPLPTDHPLWQRDDVLITPHISGQ------IAHFRATVFPIFAANFAQFV 300

>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad Length = 381

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 9/133 (6%)
Query: 31  AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML 90
            + L  +T+G VG G +G  L  RL+      L  D     P+  +     F   LD ++
Sbjct: 114 GFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCD----PPRAARGDEGDFRT-LDELV 168
Query: 91  PKCDIVVVNTPLTE----KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH 146
            + D++  +TPL +    KT  + D+  I ++K G +++N  RG ++D  A++   ++G 
Sbjct: 169 QEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQ 228
Query: 147 IAGYSGDVWNPQP 159
                 DVW  +P
Sbjct: 229 PLSVVLDVWEGEP 241

>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate Dehydrogenase Complexed With Nad Length = 380

Iteration: 1
 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 7/120 (5%)
Query: 72  PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK----TRGMFDKDRIAKMKKGVLIVNN 127
           P+  +E   +F   L+ +L + D++ ++TPL       TR + D+ R+A ++ G  +VN 
Sbjct: 148 PRQAREPDGEFVS-LERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNA 206
Query: 128 ARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQV 187
           +RGA++D QA+      G     + DVW  +  P+  P         TPH++G +++ ++
Sbjct: 207 SRGAVVDNQALRRLLEGGADLEVALDVWEGE--PQADPELAARCLIATPHIAGYSLEGKL 264

>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related Protein From Thermoplasma Acidophilum Length = 290

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 8/125 (6%)
Query: 56  KPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI 115
           K F   ++ + R  +D  ++        E    +  + D V++  PLT+KTRG  +   +
Sbjct: 142 KAFGXRVIAYTRSSVDQNVDV-----ISESPADLFRQSDFVLIAIPLTDKTRGXVNSRLL 196
Query: 116 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMT 175
           A  +K + IVN AR  ++     +          Y  DVW  +P   +   R   N  ++
Sbjct: 197 ANARKNLTIVNVARADVVSKPDXIGFLKERSDVWYLSDVWWNEPEITETNLR---NAILS 253
Query: 176 PHVSG 180
           PHV+G
Sbjct: 254 PHVAG 258

>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From Pyrobaculum Aerophilum Length = 303

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 59/148 (39%), Gaps = 7/148 (4%)
Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC 93
           ++G+ V  +G G IG  + + L      +    R        KE   +F   L+  L + 
Sbjct: 122 IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP------KEGPWRFTNSLEEALREA 175
Query: 94  DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD 153
              V   PL + TRG+     +A   +  + VN  R  ++D   V+          ++ D
Sbjct: 176 RAAVCALPLNKHTRGLVKYQHLALXAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASD 235
Query: 154 V-WNPQPAPKDHPWRYMPNQAMTPHVSG 180
           V W      KD  +  +PN   TP V+G
Sbjct: 236 VWWGRNDFAKDAEFFSLPNVVATPWVAG 263

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	240
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	1e-102
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	1e-101
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	5e-96
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	4e-60
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	3e-58
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	5e-58
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	6e-58
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	2e-57
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	2e-57
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	3e-57
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	6e-57
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	2e-56
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	2e-54
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	2e-53
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	1e-52
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	1e-52
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	2e-52
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	2e-52
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	1e-50
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	3e-50
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	8e-50
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	9e-50
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	2e-49
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	3e-49
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	6e-49
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	2e-48
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	1e-47
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	4e-47
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	2e-45
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	3e-45
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	5e-44
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	7e-44
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	1e-18
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	1e-04
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	4e-04
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	8e-04

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351

 Score =  299 bits (768), Expect = e-102
 Identities = 153/187 (81%), Positives = 173/187 (92%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           MRILIL+RNF+PG++QV+ GEWNVAG+AYRAYDLEGKT+GTVG GRIGKLLLQRLKPF C
Sbjct: 129 MRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGC 188

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           NLLYHDR++M P+LEKETGAKF EDL+ MLPKCD++V+N PLTEKTRGMF+K+ I K+KK
Sbjct: 189 NLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKK 248

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           GVLIVNNARGAIM+ QAVVDA  SGHI GYSGDVW+PQPAPKDHPWRYMPNQAMTPH SG
Sbjct: 249 GVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSG 308

Query: 181 TTIDAQV 187
           TTIDAQ+
Sbjct: 309 TTIDAQL 315

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393

 Score =  298 bits (766), Expect = e-101
 Identities = 93/187 (49%), Positives = 116/187 (62%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M IL LVRN+LP H     G WN+A     AYDLE   VGTV  GRIG  +L+RL PF+ 
Sbjct: 156 MMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDV 215

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
           +L Y DR ++   +EKE    +    + M P CD+V +N PL  +T  M + + +   K+
Sbjct: 216 HLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKR 275

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
           G  IVN ARG + D  AV  A  SG +AGY+GDVW PQPAPKDHPWR MP   MTPH+SG
Sbjct: 276 GAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG 335

Query: 181 TTIDAQV 187
           TT+ AQ 
Sbjct: 336 TTLTAQA 342

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364

 Score =  284 bits (728), Expect = 5e-96
 Identities = 98/193 (50%), Positives = 131/193 (67%), Gaps = 6/193 (3%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           M +L+LVRNF+P H Q+I+ +W VA +A  AYD+EGKT+ T+G GRIG  +L+RL PFN 
Sbjct: 129 MTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNP 188

Query: 61  N-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119
             LLY+D   +    E++ GA+  E+++ ++ + DIV VN PL   T+G+ +K+ ++K K
Sbjct: 189 KELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFK 248

Query: 120 KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN-----QAM 174
           KG  +VN ARGAI   + V  A  SG + GY GDVW PQPAPKDHPWR M N      AM
Sbjct: 249 KGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAM 308

Query: 175 TPHVSGTTIDAQV 187
           TPH SGTT+DAQ 
Sbjct: 309 TPHYSGTTLDAQT 321

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330

 Score =  191 bits (487), Expect = 4e-60
 Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 8/191 (4%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
            + L R+       V SG++      +    L+  TVG +G G IG  +  RL+ +   L
Sbjct: 112 AVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATL 171

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
            YH+   +D Q E+  G +       +    D +++  PL   T  + + + +A ++ G 
Sbjct: 172 QYHEAKALDTQTEQRLGLRQV-ACSELFASSDFILLALPLNADTLHLVNAELLALVRPGA 230

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDV-------WNPQPAPKDHPWRYMPNQAMT 175
           L+VN  RG+++D  AV+ A   G + GY+ DV          +P   D      PN   T
Sbjct: 231 LLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFT 290

Query: 176 PHVSGTTIDAQ 186
           PH+       +
Sbjct: 291 PHIGSAVRAVR 301

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290

 Score =  185 bits (472), Expect = 3e-58
 Identities = 43/187 (22%), Positives = 80/187 (42%), Gaps = 12/187 (6%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L   +N L  +  + +G +           L GK +G +G G IG+ +    K F   +
Sbjct: 93  LLAHAKNILENNELMKAGIFR----QSPTTLLYGKALGILGYGGIGRRVAHLAKAFGMRV 148

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           + + R      +++      E     +  + D V++  PLT+KTRGM +   +A  +K +
Sbjct: 149 IAYTRS----SVDQNVDVISE-SPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNL 203

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
            IVN AR  ++    ++          Y  DVW  +P   +     + N  ++PHV+G  
Sbjct: 204 TIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPEITETN---LRNAILSPHVAGGM 260

Query: 183 IDAQVIV 189
               + +
Sbjct: 261 SGEIMDI 267

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303

 Score =  185 bits (471), Expect = 5e-58
 Identities = 40/186 (21%), Positives = 72/186 (38%), Gaps = 10/186 (5%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L   +  +    ++  G++           ++G+ V  +G G IG  + + L      +
Sbjct: 94  LLAPYKRIIQYGEKMKRGDYGRD---VEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQV 150

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
               R        KE   +F   L+  L +    V   PL + TRG+     +A M +  
Sbjct: 151 RGFSRT------PKEGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDA 204

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDV-WNPQPAPKDHPWRYMPNQAMTPHVSGT 181
           + VN  R  ++D   V+          ++ DV W      KD  +  +PN   TP V+G 
Sbjct: 205 VFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGG 264

Query: 182 TIDAQV 187
             + +V
Sbjct: 265 YGNERV 270

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348

 Score =  186 bits (474), Expect = 6e-58
 Identities = 49/190 (25%), Positives = 82/190 (43%), Gaps = 7/190 (3%)

Query: 3   ILILVRNFLPGHHQVISGEWN-----VAGVAYRAYDLEGKTVGTVGCGRIGKLLLQR-LK 56
           IL + R          +G+          +   A++  G  +G VG G I K + ++ + 
Sbjct: 125 ILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVH 184

Query: 57  PFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA 116
                L+Y+D    D + EK  GA+  + L+ +  + D V V+ P  + T  + D+   A
Sbjct: 185 GLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFA 244

Query: 117 KMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTP 176
            MK G  IVN ARG ++   A++ A  SG +     DV   +P         M +  +T 
Sbjct: 245 AMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQV-SKELIEMKHVTLTT 303

Query: 177 HVSGTTIDAQ 186
           H+ G  I+  
Sbjct: 304 HIGGVAIETF 313

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320

 Score =  183 bits (468), Expect = 2e-57
 Identities = 51/185 (27%), Positives = 87/185 (47%), Gaps = 2/185 (1%)

Query: 3   ILILVRNFLPGHHQVISGEWN-VAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN 61
           +L   R    G   + +  W     +      L+ KT+G  G G IG+ L +R + F+ +
Sbjct: 112 LLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMD 171

Query: 62  LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
           + Y D  +     E    A F + LD++L       +N P T +TR  F+K  I  + +G
Sbjct: 172 IDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQG 231

Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT 181
            ++VN ARG ++D + VV A  +G +A    DV+  +P   +  +  +PN  + PH+   
Sbjct: 232 AIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNTFLFPHIGSA 290

Query: 182 TIDAQ 186
              A+
Sbjct: 291 ATQAR 295

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347

 Score =  184 bits (470), Expect = 2e-57
 Identities = 53/193 (27%), Positives = 91/193 (47%), Gaps = 7/193 (3%)

Query: 3   ILILVRNFLPGHHQVISGEWN-----VAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKP 57
           IL L R     H  +  G        +  VA  A  + G+T+G +G GR+G+ +  R K 
Sbjct: 130 ILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKA 189

Query: 58  FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAK 117
           F  N+L++D   +   +E+  G +    L  +L   D V ++  L E    + +   + +
Sbjct: 190 FGFNVLFYDP-YLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQ 248

Query: 118 MKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP-APKDHPWRYMPNQAMTP 176
           M++G  +VN ARG ++D +A+  A   G I G + DV   +P +    P +  PN   TP
Sbjct: 249 MRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTP 308

Query: 177 HVSGTTIDAQVIV 189
           H +  +  A + +
Sbjct: 309 HAAWYSEQASIEM 321

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307

 Score =  183 bits (466), Expect = 3e-57
 Identities = 62/187 (33%), Positives = 100/187 (53%), Gaps = 4/187 (2%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +  + R       ++  G W          +LEGKT+G +G GRIG  + +       N+
Sbjct: 111 MFSVARKIAFADRKMREGVWAKK--EAMGIELEGKTIGIIGFGRIGYQVAKIANALGMNI 168

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           L +D    + +  KE   KF  DL+T+L + D+V ++ PL E T  + +++R+  MKK  
Sbjct: 169 LLYDPY-PNEERAKEVNGKFV-DLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTA 226

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           +++N +RG ++DT A+V A   G IAG   DV+  +P PKDHP     N  +TPH+  +T
Sbjct: 227 ILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGAST 286

Query: 183 IDAQVIV 189
           ++AQ   
Sbjct: 287 VEAQERA 293

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334

 Score =  183 bits (466), Expect = 6e-57
 Identities = 67/189 (35%), Positives = 108/189 (57%), Gaps = 8/189 (4%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRA-----YDLEGKTVGTVGCGRIGKLLLQRLKP 57
           +L   R+ + G   V SGEW   GVA+       YD+ GKT+G +G GRIG+ + +R K 
Sbjct: 112 LLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKG 171

Query: 58  FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAK 117
           FN  +LY+ R     ++E+E  A+F+  L+ +L + D VV+  PLT +T  + +++R+  
Sbjct: 172 FNMRILYYSR-TRKEEVERELNAEFK-PLEDLLRESDFVVLAVPLTRETYHLINEERLKL 229

Query: 118 MKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPH 177
           MKK  +++N ARG ++DT A+V A   G IAG   DV+  +P   +     + N  +TPH
Sbjct: 230 MKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYY-NEELFKLDNVVLTPH 288

Query: 178 VSGTTIDAQ 186
           +   +  A+
Sbjct: 289 IGSASFGAR 297

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333

 Score =  181 bits (463), Expect = 2e-56
 Identities = 64/188 (34%), Positives = 101/188 (53%), Gaps = 7/188 (3%)

Query: 3   ILILVRNFLPGHHQVISGEWN----VAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPF 58
           I+ L+R        +  GEW     +     R   L GK VG +G G IGK + +RL PF
Sbjct: 109 IINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPF 168

Query: 59  NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKM 118
              L Y  R      +EKE  A++  D+D +L K DIV++  PLT  T  + +++R+ K+
Sbjct: 169 GVKLYYWSR-HRKVNVEKELKARYM-DIDELLEKSDIVILALPLTRDTYHIINEERVKKL 226

Query: 119 KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHV 178
           + G  +VN  RGA++D +AV +A   G + GY+ DV+  +P  +   ++Y     +TPH 
Sbjct: 227 E-GKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHY 285

Query: 179 SGTTIDAQ 186
           +G  ++AQ
Sbjct: 286 AGLALEAQ 293

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330

 Score =  176 bits (450), Expect = 2e-54
 Identities = 55/184 (29%), Positives = 87/184 (47%), Gaps = 2/184 (1%)

Query: 3   ILILVRNFLPGHHQVISGEWNV-AGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN 61
           +L   R       +V +G W     +    Y L   TVG +G GRIG+ + +RLKPF   
Sbjct: 121 LLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQ 180

Query: 62  LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
              +   +  P+   E  A+F      +  + D +VV   LT  T G+ +KD   KMK+ 
Sbjct: 181 RFLYTGRQPRPEEAAEFQAEFV-STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKET 239

Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT 181
            + +N +RG +++   +  A +SG IA    DV +P+P P +HP   + N  + PH+   
Sbjct: 240 AVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSA 299

Query: 182 TIDA 185
           T   
Sbjct: 300 THRT 303

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score =  174 bits (442), Expect = 2e-53
 Identities = 40/184 (21%), Positives = 73/184 (39%), Gaps = 4/184 (2%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L +VR +                +      L G+ +   G G+IG+ L  +      ++
Sbjct: 106 MLSVVRGYHAAWLNQRGARQWALPMTTS--TLTGQQLLIYGTGQIGQSLAAKASALGMHV 163

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           +  +     P         F       L   + +V   PLT  T  +F  +   + K+  
Sbjct: 164 IGVNT-TGHPADHFHETVAFT-ATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQP 221

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           +++N  RG  +DT A++ A     ++  + DV  P+P P DHP     +  +TPH+SG  
Sbjct: 222 MLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQI 281

Query: 183 IDAQ 186
              +
Sbjct: 282 AHFR 285

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311

 Score =  171 bits (436), Expect = 1e-52
 Identities = 61/185 (32%), Positives = 99/185 (53%), Gaps = 9/185 (4%)

Query: 3   ILILVRNFLPGHHQVISGEWNV-AGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN 61
           +L + R  + G      G W           DL+G T+G VG GRIG+ + +R   F   
Sbjct: 110 LLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMR 169

Query: 62  LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
           ++YH R        K     F   L+ +L + D+V ++TPLT +T  + +++R+  MK+G
Sbjct: 170 VVYHART------PKPLPYPFL-SLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRG 222

Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGT 181
            +++N ARGA++DT+A+V+A   GH+ G   DV +P+P P  HP   +PN  +TPH+   
Sbjct: 223 AILLNTARGALVDTEALVEAL-RGHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSA 281

Query: 182 TIDAQ 186
               +
Sbjct: 282 GRTTR 286

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352

 Score =  172 bits (439), Expect = 1e-52
 Identities = 43/195 (22%), Positives = 83/195 (42%), Gaps = 9/195 (4%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAY--------DLEGKTVGTVGCGRIGKLLLQR 54
           ++   R        +  G W  +G+              L+G+T+G  G G+IG+L+   
Sbjct: 119 VMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGY 178

Query: 55  LKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR 114
            + F  N+L   R +   +  +  G    E  D +  + D++ V+  L ++TR +     
Sbjct: 179 GRAFGMNVLVWGR-ENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVAD 237

Query: 115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAM 174
           + +MK   L VN +R  +++   +V A + G     + DV+  +P  + H    M N   
Sbjct: 238 LTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCIC 297

Query: 175 TPHVSGTTIDAQVIV 189
           TPH+     ++  + 
Sbjct: 298 TPHIGYVERESYEMY 312

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335

 Score =  171 bits (437), Expect = 2e-52
 Identities = 59/187 (31%), Positives = 96/187 (51%), Gaps = 5/187 (2%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           I+ L R        +  G+W      +   +L GKT+G +G GRIG+ +  R++ F    
Sbjct: 134 IMCLARQIPQATASMKDGKWERK--KFMGTELNGKTLGILGLGRIGREVATRMQSFGMKT 191

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           + +D + + P++    G +    L+ + P CD + V+TPL   T G+ + +  A+ KKGV
Sbjct: 192 IGYDPI-ISPEVSASFGVQQL-PLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGV 249

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
            +VN ARG I+D  A++ A  SG  AG + DV+  +P P+D       N    PH+  +T
Sbjct: 250 RVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRDRALVDHENVISCPHLGAST 308

Query: 183 IDAQVIV 189
            +AQ   
Sbjct: 309 KEAQSRC 315

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313

 Score =  171 bits (435), Expect = 2e-52
 Identities = 42/189 (22%), Positives = 82/189 (43%), Gaps = 8/189 (4%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           ++   R          SG +          +L GKT+G VG GRIG  +          +
Sbjct: 113 MIAAARKMYTSMALAKSGIFK----KIEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKV 168

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           L +D +    +  ++  AK    L+ +L   D++ ++  +++  + + D  +   MK  V
Sbjct: 169 LAYDIL-DIREKAEKINAKAV-SLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNV 226

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDH--PWRYMPNQAMTPHVSG 180
           +IVN +R   ++ +A++D    G +  Y+ DV+  +P  ++            +T H+  
Sbjct: 227 IIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGA 286

Query: 181 TTIDAQVIV 189
            T +AQ  V
Sbjct: 287 QTKEAQKRV 295

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345

 Score =  167 bits (425), Expect = 1e-50
 Identities = 54/181 (29%), Positives = 91/181 (50%), Gaps = 5/181 (2%)

Query: 3   ILILVRNFLPGHHQVISGEWNV-AGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN 61
           +L   R        V SG W            L G+ +G  G GRIG+ +  R + F   
Sbjct: 139 VLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGLA 198

Query: 62  LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
           + YH+R ++      E GA + + LD++L   DI ++  P   + +G  D DRIAK+ +G
Sbjct: 199 IHYHNRTRLSH--ALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEG 256

Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHV-SG 180
            +++N +RG +++  A+++A  S H+     DV+  +P   D  +R + N  +TPH+ S 
Sbjct: 257 AVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEP-AIDPRYRSLDNIFLTPHIGSA 315

Query: 181 T 181
           T
Sbjct: 316 T 316

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529

 Score =  170 bits (433), Expect = 3e-50
 Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 5/187 (2%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L   R        +    W  +  ++   ++ GKTVG VG GRIG+L+ QR+  F   +
Sbjct: 111 LLAASRQIPAADASLREHTWKRS--SFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYV 168

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           + +D   + P    + G +    LD +L + D + V+ P T +T G+ DK+ +AK K GV
Sbjct: 169 VAYDPY-VSPARAAQLGIELL-SLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGV 226

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           +IVN ARG ++D  A+ DA + GH+     DV+  +P   D P   +    +TPH+  +T
Sbjct: 227 IIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEP-CTDSPLFELAQVVVTPHLGAST 285

Query: 183 IDAQVIV 189
            +AQ   
Sbjct: 286 AEAQDRA 292

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333

 Score =  164 bits (418), Expect = 8e-50
 Identities = 52/197 (26%), Positives = 91/197 (46%), Gaps = 18/197 (9%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
              ++R       +V   +   A       ++  + VG VG G IG++ +Q ++ F   +
Sbjct: 115 AARILRQDKAMDEKVARHDLRWAP--TIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKV 172

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           + +D  + +P+LEK+ G   +  LD +  + D++ ++ P       M + + IAKMK+ V
Sbjct: 173 ITYDIFR-NPELEKK-GYYVD-SLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDV 229

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW-------------NPQPAPKDHPWRYM 169
           +IVN +RG ++DT AV+    SG I GY+ DV+                P  +       
Sbjct: 230 VIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIAR 289

Query: 170 PNQAMTPHVSGTTIDAQ 186
           PN  +TP  +  T  A 
Sbjct: 290 PNVLVTPKTAFYTTHAV 306

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404

 Score =  166 bits (423), Expect = 9e-50
 Identities = 53/191 (27%), Positives = 93/191 (48%), Gaps = 10/191 (5%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L+L+R     + +   G  N   +A  +++  GK +G +G G IG  L    +     +
Sbjct: 114 LLLLLRGVPEANAKAHRGVGN--KLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYV 171

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
            ++D      +L      + +  L  +L   D+V ++ P    T+ M     I+ MK G 
Sbjct: 172 YFYDIE---NKLPLGNATQVQ-HLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGS 227

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA----PKDHPWRYMPNQAMTPHV 178
           L++N +RG ++D  A+ DA +S H+AG + DV+  +PA    P   P     N  +TPH+
Sbjct: 228 LLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHI 287

Query: 179 SGTTIDAQVIV 189
            G+T +AQ  +
Sbjct: 288 GGSTQEAQENI 298

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333

 Score =  163 bits (415), Expect = 3e-49
 Identities = 47/199 (23%), Positives = 88/199 (44%), Gaps = 18/199 (9%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
              L L+RN      Q+ +G++  AG  +   +L  +TVG +G G IG++ ++  K F  
Sbjct: 111 TDTLYLLRNMGKVQAQLQAGDYEKAG-TFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGA 169

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
            ++ +D     P         +   L+ +  + D++ ++ P  E+   + ++     MK 
Sbjct: 170 KVIAYDPY---PMKGDHPDFDYV-SLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKP 225

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW-------------NPQPAPKDHPWR 167
           G +++N AR  ++DTQA++    SG +AG   D +                  P      
Sbjct: 226 GAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELL 285

Query: 168 YMPNQAMTPHVSGTTIDAQ 186
            MPN  ++PH++  T  A 
Sbjct: 286 GMPNVVLSPHIAYYTETAV 304

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416

 Score =  164 bits (418), Expect = 6e-49
 Identities = 55/191 (28%), Positives = 94/191 (49%), Gaps = 10/191 (5%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           I++L+R   P      +G W     A  + ++ GKT+G VG G IG  +    +     +
Sbjct: 125 IIMLMRRIFPRSVSAHAGGWE--KTAIGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTV 182

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
            Y+D              K    LD +L   D+V ++ P ++ T  +  + ++ KMKKG 
Sbjct: 183 RYYDTSDKLQYG----NVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGA 238

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPK----DHPWRYMPNQAMTPHV 178
            ++NNARG+ +D +A+      GH+AG + DV+  +PA        P + + N  +TPH+
Sbjct: 239 FLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHI 298

Query: 179 SGTTIDAQVIV 189
            G+T +AQ  +
Sbjct: 299 GGSTEEAQERI 309

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331

 Score =  161 bits (409), Expect = 2e-48
 Identities = 50/198 (25%), Positives = 85/198 (42%), Gaps = 19/198 (9%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
            ++L+R+      +     + V      + ++   TVG VG GRIG++  Q        +
Sbjct: 114 AMMLLRHTAYTTSRTAKKNFKVDA-FMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATV 172

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           +  D          E        LD +L K DI+ ++ P  ++   +  +D + KMK G 
Sbjct: 173 IGEDVF---EIKGIEDYCTQV-SLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGA 228

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDV-----------WNPQPAPKDHPWRYM-- 169
           ++VN ARG ++DT+AV++A  SG + GY  DV              Q        + +  
Sbjct: 229 ILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDL 288

Query: 170 -PNQAMTPHVSGTTIDAQ 186
            P   +TPH+   T +A 
Sbjct: 289 YPRVLITPHLGSYTDEAV 306

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340

 Score =  159 bits (404), Expect = 1e-47
 Identities = 44/183 (24%), Positives = 80/183 (43%), Gaps = 6/183 (3%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L ++R    G   V  G W         +  +GK +G +G G+IG+ L  R + F  ++
Sbjct: 138 MLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMSV 197

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
            Y +R  +             +    +    D++ V    +  T+ + D   +  +    
Sbjct: 198 RYWNRSTLS-----GVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEG 252

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           ++VN ARG ++D  A+++A  SG IAG   DV+  +PA     +   PN  + PH    T
Sbjct: 253 IVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAI-RSEFHTTPNTVLMPHQGSAT 311

Query: 183 IDA 185
           ++ 
Sbjct: 312 VET 314

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333

 Score =  157 bits (400), Expect = 4e-47
 Identities = 48/183 (26%), Positives = 78/183 (42%), Gaps = 7/183 (3%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           IL ++R        V  G W   G         GK VG +G GRIG  + +R + F+C +
Sbjct: 132 ILAVLRRICECDKYVRRGAWK-FGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPI 190

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
            Y  R K        T   +   +  +    DI+VV  PLT +T  + +++ I  +    
Sbjct: 191 SYFSRSKKP-----NTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKG 245

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTT 182
           +++N  RG  +D   +V A   G + G   DV+  +P         + N  + PHV   T
Sbjct: 246 VLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEV-PEKLFGLENVVLLPHVGSGT 304

Query: 183 IDA 185
           ++ 
Sbjct: 305 VET 307

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381

 Score =  154 bits (392), Expect = 2e-45
 Identities = 40/160 (25%), Positives = 75/160 (46%), Gaps = 11/160 (6%)

Query: 32  YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP 91
           + L  +T+G VG G +G  L  RL+      L  D     P+  +     F   LD ++ 
Sbjct: 115 FSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDP----PRAARGDEGDFR-TLDELVQ 169

Query: 92  KCDIVVVNTPLTE----KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI 147
           + D++  +TPL +    KT  + D+  I ++K G +++N  RG ++D  A++   ++G  
Sbjct: 170 EADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQP 229

Query: 148 AGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQV 187
                DVW  +P   +       +   T H++G T++ + 
Sbjct: 230 LSVVLDVWEGEP-DLNVALLEAVDIG-TSHIAGYTLEGKA 267

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380

 Score =  154 bits (391), Expect = 3e-45
 Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 11/163 (6%)

Query: 29  YRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDT 88
            R  DL  +T G VG G++G  L++ L+     +L  D     P+  +E   +F   L+ 
Sbjct: 109 VRGADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDP----PRQAREPDGEFV-SLER 163

Query: 89  MLPKCDIVVVNTPLTE----KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS 144
           +L + D++ ++TPL       TR + D+ R+A ++ G  +VN +RGA++D QA+      
Sbjct: 164 LLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEG 223

Query: 145 GHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQV 187
           G     + DVW  +P     P         TPH++G +++ ++
Sbjct: 224 GADLEVALDVWEGEPQA--DPELAARCLIATPHIAGYSLEGKL 264

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324

 Score =  149 bits (379), Expect = 5e-44
 Identities = 47/192 (24%), Positives = 79/192 (41%), Gaps = 8/192 (4%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
             +L L+R       Q     W     ++    L+G+T+  +G G IG+ +    K F  
Sbjct: 109 GHLLSLMRQLPLYREQQKQRLWQ----SHPYQGLKGRTLLILGTGSIGQHIAHTGKHFGM 164

Query: 61  NLLYHDR-VKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK 119
            +L   R  +     ++         L+ ML + D++V   P T +T  +F   R    K
Sbjct: 165 KVLGVSRSGRERAGFDQVYQ---LPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCK 221

Query: 120 KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVS 179
            G ++ N  RG  ++   ++ A  +G +     DV+  +P P D P    PN  +TPH S
Sbjct: 222 PGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNS 281

Query: 180 GTTIDAQVIVHF 191
             +    V   F
Sbjct: 282 AYSFPDDVAQIF 293

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315

 Score =  148 bits (377), Expect = 7e-44
 Identities = 50/191 (26%), Positives = 86/191 (45%), Gaps = 10/191 (5%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L   R F           W         Y  E  +VG +G G +G  + + L+ +   L
Sbjct: 110 VLHWFRRFDDYQALKNQALWK----PLPEYTREEFSVGIMGAGVLGAKVAESLQAWGFPL 165

Query: 63  LYHDR-VKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
               R  K  P +E   G    E+L   L +  +++   P T +T G+ + + + ++  G
Sbjct: 166 RCWSRSRKSWPGVESYVG---REELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDG 222

Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHP-WRYMPNQAMTPHVSG 180
             ++N ARG  +    ++ A  SG + G   DV++ +P P++ P WR  P  AMTPH++ 
Sbjct: 223 AYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWR-HPRVAMTPHIAA 281

Query: 181 TTIDAQVIVHF 191
            T  A+ I + 
Sbjct: 282 VTRPAEAIDYI 292

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 81.9 bits (202), Expect = 1e-18
 Identities = 26/165 (15%), Positives = 56/165 (33%), Gaps = 17/165 (10%)

Query: 5   ILVRNFLPGHHQVISGEWNVAGVAYRAYD--LEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           ++ R+ +  ++ + + E  +  +A +  D  + G  V  +G GR+G  + ++       +
Sbjct: 123 LMERDDIAIYNSIPTAEGTIM-MAIQHTDFTIHGANVAVLGLGRVGMSVARKFAALGAKV 181

Query: 63  LYHDRVKMDPQLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
               R         E G +          L   D+ +   P       +   + +A+M  
Sbjct: 182 KVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPAL-----VVTANVLAEMPS 236

Query: 121 GVLIVNNARG--AIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKD 163
              +++ A          A      +  + G  G V     APK 
Sbjct: 237 HTFVIDLASKPGGTDFRYAEKRGIKALLVPGLPGIV-----APKT 276

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} Length = 387

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 18/75 (24%)

Query: 39  VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK----MDPQLEK------ETGAKFEEDLDT 88
            G  G G  G +L+         + +H   +     DP  +       E G      L  
Sbjct: 5   FGICGLGFAGSVLMAPA------MRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAE 58

Query: 89  ML--PKCDIVVVNTP 101
           M+   + D V + +P
Sbjct: 59  MMQHVQMDAVYIASP 73

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} Length = 354

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 9/75 (12%), Positives = 25/75 (33%), Gaps = 19/75 (25%)

Query: 39  VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM----DPQLEK------ETGAKFEEDLDT 88
           V  +G GR   ++              +++K+        +K            +  ++ 
Sbjct: 8   VAAIGLGRWAYVMAD-------AYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEA 60

Query: 89  ML--PKCDIVVVNTP 101
           +L     ++V++  P
Sbjct: 61  LLAREDVEMVIITVP 75

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* Length = 354

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 12/72 (16%)

Query: 39  VGTVGCGRIGKLLLQRLK--PFNCNL-----LYHDRVKMDPQLEKETGAKFEEDLDTML- 90
              VGCGRI       L+       L     +    +K      + TGA+    L  ML 
Sbjct: 16  FALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALK---AAVERTGARGHASLTDMLA 72

Query: 91  -PKCDIVVVNTP 101
               DIV++ TP
Sbjct: 73  QTDADIVILTTP 84

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	240
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	100.0
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	100.0
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	100.0
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	100.0
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	100.0
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	100.0
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	100.0
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	100.0
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	100.0
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	100.0
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	100.0
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	100.0
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	100.0
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	100.0
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	100.0
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	100.0
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	100.0
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	100.0
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	100.0
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	100.0
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	100.0
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	100.0
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	100.0
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	100.0
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	100.0
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	100.0
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	100.0
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	100.0
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	100.0
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	100.0
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	100.0
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	100.0
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	100.0
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	99.97
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	99.97
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	99.84
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	99.82
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	99.78
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	99.73
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	99.72
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	99.66
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.64
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.63
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.63
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.62
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	99.61
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.57
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.56
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.56
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.56
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.56
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.55
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.53
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.52
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.51
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.5
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.49
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	99.47
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.47
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.46
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.45
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.45
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	99.39
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.39
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	99.38
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	99.38
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	99.38
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.37
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	99.34
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	99.34
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	99.34
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	99.34
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	99.33
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	99.32
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	99.32
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	99.31
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	99.31
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	99.3
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	99.28
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	99.28
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.26
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.26
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	99.23
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.22
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	99.22
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	99.21
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	99.2
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	99.2
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	99.18
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	99.18
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	98.78
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	99.13
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	99.1
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	99.1
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	99.08
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	99.07
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	99.07
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	99.06
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	99.06
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	99.05
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	99.04
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	99.03
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	99.03
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	99.02
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	98.99
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	98.98
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	98.96
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.96
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.96
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.95
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.95
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.92
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.88
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.87
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.87
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	98.87
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	98.86
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	98.84
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.84
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	98.83
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	98.83
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	98.82
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	98.82
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	98.81
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.79
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.76
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.75
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.75
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.73
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	98.72
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	98.71
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	98.71
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	98.7
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	98.7
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.65
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	98.65
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.63
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.62
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.62
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.62
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	98.6
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	98.59
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	98.59
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	98.57
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	98.54
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	98.53
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	98.53
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	98.53
3l07_A	285	Bifunctional protein fold; structural genomics, ID	98.52
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	98.52
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.51
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	98.51
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	98.51
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	98.5
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	98.5
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	98.49
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	98.49
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	98.48
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	98.48
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.44
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	98.44
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	98.42
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.42
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.39
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	98.33
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	98.32
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	98.31
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	98.3
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.28
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.28
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	98.26
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	98.25
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	98.24
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	98.22
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	98.22
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	98.19
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	98.18
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	98.18
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	98.17
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	98.15
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	98.15
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	98.14
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	98.14
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	98.14
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	98.12
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	98.11
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	98.1
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	98.08
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	98.08
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	98.08
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	98.05
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	98.05
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	98.05
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	98.05
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	98.03
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	98.01
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	98.0
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	97.99
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	97.99
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	97.99
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.99
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.98
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.97
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	97.97
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	97.95
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	97.95
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	97.94
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	97.94
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.94
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.93
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	97.92
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	97.9
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.89
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	97.88
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.86
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	97.86
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	97.84
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	97.83
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	97.83
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	97.83
4f2g_A	309	Otcase 1, ornithine carbamoyltransferase 1; struct	97.83
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.82
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.81
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	97.8
4ep1_A	340	Otcase, ornithine carbamoyltransferase; structural	97.78
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	97.76
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	97.75
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.75
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	97.74
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	97.74
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	97.73
2ef0_A	301	Ornithine carbamoyltransferase; TTHA1199, thermus	97.72
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	97.72
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	97.72
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	97.71
1ydw_A	362	AX110P-like protein; structural genomics, protein	97.7
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	97.69
3gd5_A	323	Otcase, ornithine carbamoyltransferase; structural	97.68
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	97.68
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.67
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	97.66
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	97.66
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	97.64
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	97.63
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	97.63
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	97.63
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.62
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	97.61
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	97.6
3tpf_A	307	Otcase, ornithine carbamoyltransferase; structural	97.59
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	97.58
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	97.58
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	97.58
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	97.58
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	97.57
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	97.57
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.56
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	97.56
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	97.55
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	97.55
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	97.55
4a8t_A	339	Putrescine carbamoyltransferase; trabnsferase PALO	97.54
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	97.54
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.54
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	97.52
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	97.5
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	97.5
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	97.5
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	97.5
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	97.49
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	97.49
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	97.48
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	97.48
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	97.47
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	97.47
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	97.47
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	97.47
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	97.46
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	97.46
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.46
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	97.46
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	97.45
4a8p_A	355	Putrescine carbamoyltransferase; ornithine agmatin	97.45
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	97.45
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	97.44
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	97.43
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	97.42
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	97.42
1oth_A	321	Protein (ornithine transcarbamoylase); transferase	97.42
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	97.42
3sds_A	353	Ornithine carbamoyltransferase, mitochondrial; str	97.42
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	97.41
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	97.41
4amu_A	365	Ornithine carbamoyltransferase, catabolic; ornithi	97.41
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	97.4
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	97.4
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	97.37
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	97.37
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	97.37
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	97.36
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	97.36
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	97.34
4had_A	350	Probable oxidoreductase protein; structural genomi	97.34
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	97.33
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	97.33
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	97.32
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	97.31
2w37_A	359	Ornithine carbamoyltransferase, catabolic; transca	97.31
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	97.3
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	97.3
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	97.28
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	97.28
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	97.27
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	97.26
3grf_A	328	Ornithine carbamoyltransferase; ornithine transcar	97.25
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	97.24
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	97.24
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	97.24
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	97.21
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	97.21
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	97.21
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	97.2
1lnq_A	336	MTHK channels, potassium channel related protein;	97.18
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	97.18
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	97.17
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	97.17
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	97.17
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	97.16
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.16
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	97.16
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	97.13
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	97.13
3tl2_A	315	Malate dehydrogenase; center for structural genomi	97.12
4eye_A	342	Probable oxidoreductase; structural genomics, niai	97.12
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	97.11
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	97.11
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	97.11
3gms_A	340	Putative NADPH:quinone reductase; structural genom	97.1
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	97.09
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	97.09
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	97.08
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	97.08
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	97.07
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.07
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	97.07
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	97.07
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	97.07
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	97.06
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	97.06
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	97.05
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.05
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	97.04
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	97.03
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	97.03
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	97.03
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	97.03
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	97.02
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	97.02
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	97.02
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	97.02
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	97.01
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	97.01
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.01
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	97.0
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.99
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	96.96
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	96.96
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	96.96
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	96.96
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	96.96
1zq6_A	359	Otcase, ornithine carbamoyltransferase; alpha/beta	96.95
4ekn_B	306	Aspartate carbamoyltransferase; atcase, aspartate	96.95
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	96.95
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.94
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	96.94
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	96.94
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.94
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	96.93
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	96.92
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	96.91
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	96.91
2yfk_A	418	Aspartate/ornithine carbamoyltransferase; transcar	96.91
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	96.9
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	96.9
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	96.9
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.9
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.89
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	96.89
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	96.87
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	96.87
4h3v_A	390	Oxidoreductase domain protein; structural genomics	96.86
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	96.86
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	96.86
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	96.85
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	96.84
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	96.84
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	96.83
1js1_X	324	Transcarbamylase; alpha/beta topology, two domains	96.83
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	96.82
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	96.82
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.8
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.8
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	96.79
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	96.79
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	96.78
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	96.78
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	96.76
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	96.74
3q98_A	399	Transcarbamylase; rossmann fold, transferase; 2.00	96.74
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	96.73
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	96.72
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	96.71
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	96.71
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	96.69
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.68
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	96.68
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	96.68
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	96.67
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	96.67
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	96.64
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	96.64
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	96.64
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	96.63
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	96.61
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	96.6
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	96.6
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	96.6
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	96.59
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	96.58
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	96.58
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	96.58
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	96.58
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	96.58
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	96.55
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	96.54
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	96.54
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	96.54
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	96.54
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	96.54
4h31_A	358	Otcase, ornithine carbamoyltransferase; structural	96.53
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	96.53
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	96.52
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	96.51
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	96.51
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	96.51
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	96.5
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	96.5
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	96.5
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	96.49
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.49
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.48
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	96.46
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.46
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	96.45
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	96.45
3on5_A	362	BH1974 protein; structural genomics, joint center	96.45
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	96.45
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.43
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	96.41
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.4
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	96.39
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	96.39
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	96.39
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	96.36
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	96.35
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	96.34
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	96.34
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	96.33
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	96.31
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	96.31
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	96.29
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	96.27
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	96.26
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	96.26
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.26
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	96.24
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	96.23
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	96.23
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	96.19
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	96.17
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.14
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	96.14
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.13
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.11
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	96.09
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	96.08
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	96.08
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	96.06
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	96.06
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	96.06
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	96.05
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	96.04
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	96.03
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	96.0
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	96.0
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	95.99
3kzn_A	359	Aotcase, N-acetylornithine carbamoyltransferase; t	95.99
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	95.98

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=100.00  E-value=1.9e-52  Score=375.37  Aligned_cols=212  Identities=73%  Similarity=1.209  Sum_probs=196.3

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      ++||++.|++..+++.+++|.|........+++|.|++|||||+|.||+.+|+++++||++|++||+++.+.+.+...|+
T Consensus       129 ~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~  208 (351)
T 3jtm_A          129 MRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGA  208 (351)
T ss_dssp             HHHHHHHHTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCC
T ss_pred             HHHHHHhhCcHHHHHHHHcCCCccccccCCcccccCCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCC
Confidence            47999999999999999999997543223467899999999999999999999999999999999998766777777788


Q ss_pred             eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (240)
Q Consensus        81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  160 (240)
                      ..++++++++++||+|++|+|++++|+++++++.++.||+|++|||+|||+++|+++|+++|++|+|.||+||||++||+
T Consensus       209 ~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~  288 (351)
T 3jtm_A          209 KFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPA  288 (351)
T ss_dssp             EECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSC
T ss_pred             eEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHhCCccEEEeCCCCCCCC
Confidence            87789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCCCCCccc
Q 026360          161 PKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSNSELKYC  214 (240)
Q Consensus       161 ~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~  214 (240)
                      |.++|||.+||+++|||+||+|.|++.++..  .+.+|+.+|++|++..+.|..
T Consensus       289 ~~~~pL~~~~nvilTPHia~~t~ea~~~~~~--~~~~nl~~~~~g~~~~~~~~i  340 (351)
T 3jtm_A          289 PKDHPWRYMPNQAMTPHTSGTTIDAQLRYAA--GTKDMLERYFKGEDFPTENYI  340 (351)
T ss_dssp             CTTCGGGTSTTBCCCCSCGGGSHHHHHHHHH--HHHHHHHHHHHTCCCCGGGEE
T ss_pred             CCCChhhcCCCEEECCcCCCCCHHHHHHHHH--HHHHHHHHHHcCCCCCCceEE
Confidence            9999999999999999999999999999999  899999999999976665543

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=100.00  E-value=7e-52  Score=373.02  Aligned_cols=223  Identities=22%  Similarity=0.293  Sum_probs=188.3

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcc-cccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcC
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGV-AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG   79 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~-~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g   79 (240)
                      ++||++.|++..+++.+++|.|.+... ...+.+|.|++|||||+|.||+.+|+++++||++|++||++. +.+.+...|
T Consensus       140 ~l~L~~~R~~~~~~~~~r~g~~~w~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~-~~~~~~~~g  218 (365)
T 4hy3_A          140 GFALALARGIVDADIAFQEGTELWGGEGNASARLIAGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWL-PRSMLEENG  218 (365)
T ss_dssp             HHHHHHHHTTTHHHHHHHHTCCCCSSSSTTSCCCSSSSEEEEECCSHHHHHHHHHHTTSCCEEEEECSSS-CHHHHHHTT
T ss_pred             HHHHHHHhchhHHHHHHHcCCccccccccccccccCCCEEEEecCCcccHHHHHhhhhCCCEEEEECCCC-CHHHHhhcC
Confidence            479999999999999999999654321 234679999999999999999999999999999999999874 455556678


Q ss_pred             ceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 026360           80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (240)
Q Consensus        80 ~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP  159 (240)
                      +... ++++++++||+|++|+|++++|+++++.+.|+.||+|++|||+|||++||+++|+++|++|+|. |+||||++||
T Consensus       219 ~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~EP  296 (365)
T 4hy3_A          219 VEPA-SLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIV-AASDVYPEEP  296 (365)
T ss_dssp             CEEC-CHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSE-EEESCCSSSS
T ss_pred             eeeC-CHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCce-EEeeCCCCCC
Confidence            7764 8999999999999999999999999999999999999999999999999999999999999999 8999999999


Q ss_pred             CCCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC-CCCccchhhhcc-cceeEeee
Q 026360          160 APKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN-SELKYCSYAMLR-ESRICLTD  228 (240)
Q Consensus       160 ~~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v~~~~~~~~~-~~r~~~~~  228 (240)
                      ++.++|||.+|||++|||+||+|.|++.++..  .+.+|+.+|++|+++ +.+|...+...+ |||.+.++
T Consensus       297 l~~~~pL~~~~nvilTPHia~~t~e~~~~~~~--~~~~ni~~~~~G~~~~~~vn~~~~~~~~~r~r~v~~~  365 (365)
T 4hy3_A          297 LPLDHPVRSLKGFIRSAHRAGALDSAFKKMGD--MVLEDMDLMDRGLPPMRCKRAERETVSRMRSKPVAVN  365 (365)
T ss_dssp             CCTTCGGGTCTTEEECCSCSSCCHHHHHHHHH--HHHHHHHHHHTTCCCCSSEECCSCCC-----------
T ss_pred             CCCCChhhcCCCEEECCccccCHHHHHHHHHH--HHHHHHHHHHcCCCcccccccchhhhhhccccccCCC
Confidence            99999999999999999999999999999999  999999999999987 445542222222 89988753

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=100.00  E-value=1.5e-51  Score=368.75  Aligned_cols=206  Identities=27%  Similarity=0.517  Sum_probs=188.5

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCc-ccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcC
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAG-VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG   79 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~-~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g   79 (240)
                      ++||++.|++..+++.+++|.|.... ....+.+|.|++|||||+|.||+.+|+++++||++|++||+++.+.+...  |
T Consensus       137 ~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~--g  214 (345)
T 4g2n_A          137 LLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALEE--G  214 (345)
T ss_dssp             HHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHT--T
T ss_pred             HHHHHHHhCHHHHHHHHHcCCCcccCcccccccccCCCEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhhc--C
Confidence            47999999999999999999997432 12346899999999999999999999999999999999999764443332  7


Q ss_pred             ceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 026360           80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (240)
Q Consensus        80 ~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP  159 (240)
                      +..++++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|++||+++|++|+|.||+||||++||
T Consensus       215 ~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP  294 (345)
T 4g2n_A          215 AIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEP  294 (345)
T ss_dssp             CEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT
T ss_pred             CeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCceEEEecCCCCCC
Confidence            77777999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC-CCC
Q 026360          160 APKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN-SEL  211 (240)
Q Consensus       160 ~~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v  211 (240)
                       +.++|||++|||++|||+||+|.|++.++..  .+.+|+.+|++|+++ +.|
T Consensus       295 -~~~~pL~~~~nvilTPHia~~t~e~~~~~~~--~~~~ni~~~l~g~~~~~~V  344 (345)
T 4g2n_A          295 -AIDPRYRSLDNIFLTPHIGSATHETRDAMGW--LLIQGIEALNQSDVPDNLI  344 (345)
T ss_dssp             -SCCTTGGGCTTEEECCSCTTCBHHHHHHHHH--HHHHHHHHHHTTCCCTTBC
T ss_pred             -CCCchHHhCCCEEEcCccCcCCHHHHHHHHH--HHHHHHHHHHcCCCCCCCc
Confidence             8899999999999999999999999999999  999999999999875 443

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=100.00  E-value=2.1e-52  Score=373.17  Aligned_cols=203  Identities=27%  Similarity=0.383  Sum_probs=185.1

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      ++||++.|++...++.+++|.|..... ..+.+|.|+++||||+|+||+.+|+++++|||+|++||+..  .+.....++
T Consensus       107 ~l~L~~~r~~~~~~~~~~~~~~~~~~~-~~~~~l~g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~--~~~~~~~~~  183 (334)
T 3kb6_A          107 AMILTLVKRLKRIEDRVKKLNFSQDSE-ILARELNRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVK--REDLKEKGC  183 (334)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCCCGG-GCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC--CHHHHHTTC
T ss_pred             HHHHHHhhccccccccccccccccccc-cccceecCcEEEEECcchHHHHHHHhhcccCceeeecCCcc--chhhhhcCc
Confidence            478999999999999999999865432 35789999999999999999999999999999999999864  233445566


Q ss_pred             eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (240)
Q Consensus        81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  160 (240)
                      ... ++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|.||+||||++||+
T Consensus       184 ~~~-~l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EPl  262 (334)
T 3kb6_A          184 VYT-SLDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEI  262 (334)
T ss_dssp             EEC-CHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHHH
T ss_pred             eec-CHHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCCCC
Confidence            655 9999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCC---------------CCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCCC
Q 026360          161 PKDH---------------PWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSNS  209 (240)
Q Consensus       161 ~~~~---------------~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~  209 (240)
                      +.++               |||.+|||++|||+||+|.|+++++..  .+.+|+.+|++|++.+
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~T~ea~~~~~~--~~~~ni~~~l~Ge~~~  324 (334)
T 3kb6_A          263 LILKKYTEGKATDKNLKILELACKDNVIITPHIAYYTDKSLERIRE--ETVKVVKAFVKGDLEQ  324 (334)
T ss_dssp             HHTTGGGGTCCCHHHHHHHHHHTSTTEEECCSCTTCBHHHHHHHHH--HHHHHHHHHHHTCGGG
T ss_pred             cccccccccccccccccchhhccCCCEEECCchhhChHHHHHHHHH--HHHHHHHHHHcCCCCc
Confidence            7766               678899999999999999999999999  9999999999998654

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=100.00  E-value=7.9e-51  Score=370.85  Aligned_cols=224  Identities=25%  Similarity=0.439  Sum_probs=196.2

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      ++||+++|++..+++.+++|.|.+..  ..+++++||++||||+|.||+.+|+++++|||+|++||+++....    .+.
T Consensus       123 ~l~L~l~R~i~~~~~~~~~g~W~~~~--~~~~el~gktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~~----~~~  196 (416)
T 3k5p_A          123 GEIIMLMRRIFPRSVSAHAGGWEKTA--IGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQY----GNV  196 (416)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCCCC--TTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCCB----TTB
T ss_pred             HHHHHHhcccHHHHHhhhcccccccC--CCCccCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhcc----cCc
Confidence            47999999999999999999998653  236799999999999999999999999999999999998653221    134


Q ss_pred             eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (240)
Q Consensus        81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  160 (240)
                      ....++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|++||+++|++|++.||+||||++||+
T Consensus       197 ~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~EP~  276 (416)
T 3k5p_A          197 KPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPA  276 (416)
T ss_dssp             EECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSCCS
T ss_pred             EecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCCCCCCCC
Confidence            55679999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCC----CCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHcc-CCCCCCccchhhhcc---cceeEeeeCCcc
Q 026360          161 PKD----HPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSH-KSNSELKYCSYAMLR---ESRICLTDTSRE  232 (240)
Q Consensus       161 ~~~----~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g-~~~~~v~~~~~~~~~---~~r~~~~~~~~~  232 (240)
                      +.+    +|||.+|||++|||+||+|.|+++++..  .+.+|+.+|+++ .+.+.||+|...+-.   .+|++..|.|.-
T Consensus       277 ~~~~~~~~pL~~~~nvilTPHig~~T~ea~~~~~~--~~~~nl~~~l~~g~~~~~Vn~p~~~~~~~~~~~r~~~~h~n~p  354 (416)
T 3k5p_A          277 SNGERFSTPLQGLENVILTPHIGGSTEEAQERIGT--EVTRKLVEYSDVGSTVGAVNFPQVQLPPRPTGTRFMHVHENRP  354 (416)
T ss_dssp             STTSCCCCTTTTCTTEEECCSCTTCCHHHHHHHHH--HHHHHHHHHHHHCCCTTBSSSCCCCCCCCSSSEEEEEEECCCT
T ss_pred             CcccccchhHhcCCCEEECCCCCCCCHHHHHHHHH--HHHHHHHHHHhhCCCCceeeCCCcCCCCCCCceEEEEEecCCc
Confidence            765    7999999999999999999999999999  899999999965 466999998766543   489999998754

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=100.00  E-value=4.9e-51  Score=366.52  Aligned_cols=212  Identities=21%  Similarity=0.332  Sum_probs=195.1

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcc--------cccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCCh
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGV--------AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP   72 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~--------~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~   72 (240)
                      ++||++.|++..+++.+++|.|.....        ...+.+|.|++|||||+|.||+.+|++++++|++|++||++. ..
T Consensus       117 ~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~  195 (352)
T 3gg9_A          117 ALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGREN-SK  195 (352)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTTTSBCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHH-HH
T ss_pred             HHHHHHHhhHHHHHHHHHcCCCCcccccccccccccccCccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCC-CH
Confidence            479999999999999999999975321        123678999999999999999999999999999999999864 33


Q ss_pred             hHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEe
Q 026360           73 QLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG  152 (240)
Q Consensus        73 ~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~l  152 (240)
                      +.+...|+..++++++++++||+|++|+|++++|+++++.+.++.||+|++|||+|||+++|+++|+++|++|+|.||+|
T Consensus       196 ~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~l  275 (352)
T 3gg9_A          196 ERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAI  275 (352)
T ss_dssp             HHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEE
T ss_pred             HHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEe
Confidence            44556788877799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCCCCCccch
Q 026360          153 DVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSNSELKYCS  215 (240)
Q Consensus       153 DV~~~EP~~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~  215 (240)
                      |||++||++.++|||.+||+++|||+||+|.++.+++..  .+.+|+.+|++|+|++.||...
T Consensus       276 DV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~~~~~--~~~~ni~~~~~G~p~~~Vn~~~  336 (352)
T 3gg9_A          276 DVFETEPILQGHTLLRMENCICTPHIGYVERESYEMYFG--IAFQNILDILQGNVDSVANPTA  336 (352)
T ss_dssp             CCCSSSCCCSCCGGGGCTTEEECCSCTTCBHHHHHHHHH--HHHHHHHHHHTTCCTTBSCGGG
T ss_pred             cccCCCCCCCCChhhcCCCEEECCCCCCCCHHHHHHHHH--HHHHHHHHHHcCCCCcccCHHH
Confidence            999999999999999999999999999999999999999  8999999999999988888654

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=100.00  E-value=8.5e-51  Score=362.37  Aligned_cols=211  Identities=24%  Similarity=0.390  Sum_probs=193.6

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      ++||++.|++..+++.+++|.|........+.+|.|++|||||+|.||+.+|++++++|++|++||+++...+.+...|+
T Consensus       110 ~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~  189 (330)
T 4e5n_A          110 GLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGL  189 (330)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCSCCSCCCCCCSTTCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTE
T ss_pred             HHHHHHHhChHHHHHHHHhCCccccCccccCCccCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCc
Confidence            47999999999999999999997322223467899999999999999999999999999999999998755656666787


Q ss_pred             eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCC--
Q 026360           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ--  158 (240)
Q Consensus        81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~E--  158 (240)
                      ... ++++++++||+|++|+|++++|+++++++.++.||+|++|||+|||+++|+++|+++|++|+|.||+||||++|  
T Consensus       190 ~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~E~~  268 (330)
T 4e5n_A          190 RQV-ACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDW  268 (330)
T ss_dssp             EEC-CHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCGGGCT
T ss_pred             eeC-CHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCccEEEecccccccc
Confidence            665 89999999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             -----CCCCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC-CCCccc
Q 026360          159 -----PAPKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN-SELKYC  214 (240)
Q Consensus       159 -----P~~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v~~~  214 (240)
                           |++.++|||++|||++|||+||+|.|+..++..  .+.+|+.+|++|+++ +.||.+
T Consensus       269 ~~~~~Pl~~~~~L~~~~nvilTPHia~~t~e~~~~~~~--~~~~ni~~~~~g~~~~~~vn~~  328 (330)
T 4e5n_A          269 ARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIER--CAAQNILQALAGERPINAVNRL  328 (330)
T ss_dssp             TCTTCCSSCCHHHHTCSSEEECSSCTTCCHHHHHHHHH--HHHHHHHHHHTTSCCTTBSSCC
T ss_pred             cccCCCCCCCchHHcCCCEEECCcCCCChHHHHHHHHH--HHHHHHHHHHcCCCCCCccCCC
Confidence                 999999999999999999999999999999999  999999999999865 677754

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=100.00  E-value=3.2e-50  Score=357.29  Aligned_cols=204  Identities=24%  Similarity=0.359  Sum_probs=182.9

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      ++||++.|++..+++.+++|.|...    .+.+|.|++|||||+|.||+.+|+++++||++|++||+++.....+.  +.
T Consensus       109 ~~~L~~~R~~~~~~~~~~~g~W~~~----~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~--~~  182 (324)
T 3hg7_A          109 GHLLSLMRQLPLYREQQKQRLWQSH----PYQGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFD--QV  182 (324)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCCC----CCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTCS--EE
T ss_pred             HHHHHHHhChHHHHHHHhhCCCcCC----CCcccccceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhhh--cc
Confidence            4799999999999999999999753    35689999999999999999999999999999999998764332211  12


Q ss_pred             eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (240)
Q Consensus        81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  160 (240)
                      ....++++++++||+|++|+|++++|+++++.+.|+.||+|++|||+|||+++|+++|+++|++|++.||+||||++||+
T Consensus       183 ~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EPl  262 (324)
T 3hg7_A          183 YQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPL  262 (324)
T ss_dssp             ECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSSSC
T ss_pred             cccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEeccCCCCCC
Confidence            23458999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC-CCCccc
Q 026360          161 PKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN-SELKYC  214 (240)
Q Consensus       161 ~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v~~~  214 (240)
                      |.++|||++|||++|||+||+|.+  .++..  .+.+|+.+|++|+++ +.|+..
T Consensus       263 ~~~~pL~~~~nvilTPHia~~t~~--~~~~~--~~~~nl~~~~~G~~~~~~V~~~  313 (324)
T 3hg7_A          263 PADSPLWGQPNLIITPHNSAYSFP--DDVAQ--IFVRNYIRFIDGQPLDGKIDFD  313 (324)
T ss_dssp             CTTCTTTTCTTEEECCSCSSCCCH--HHHHH--HHHHHHHHHHTTCCCTTBCCCC
T ss_pred             CCCChhhcCCCEEEeCCCccccHH--HHHHH--HHHHHHHHHHcCCCCcceEChh
Confidence            999999999999999999999977  35667  889999999999976 666654

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=100.00  E-value=3.4e-50  Score=357.37  Aligned_cols=207  Identities=22%  Similarity=0.344  Sum_probs=185.3

Q ss_pred             CcHHHHHhCChHH-HHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcC
Q 026360            1 MRILILVRNFLPG-HHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG   79 (240)
Q Consensus         1 ~~~l~~~R~~~~~-~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g   79 (240)
                      ++||++.|++..+ ++.+++|.|....   .+++|.|++|||||+|.||+.+|+++++||++|++||+++...+.+..  
T Consensus       104 ~~~L~~~R~~~~~~~~~~~~~~W~~~~---~~~~l~gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~--  178 (324)
T 3evt_A          104 AAMLSVVRGYHAAWLNQRGARQWALPM---TTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHE--  178 (324)
T ss_dssp             HHHHHHHTTHHHHHHHHTTTCCSSCSS---CCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTCSE--
T ss_pred             HHHHHHHhChhHHHHHHHhcCCcccCC---CCccccCCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhHhh--
Confidence            4799999999999 9999999997542   367899999999999999999999999999999999997644332221  


Q ss_pred             ceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 026360           80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (240)
Q Consensus        80 ~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP  159 (240)
                      .....++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|++.||+||||++||
T Consensus       179 ~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EP  258 (324)
T 3evt_A          179 TVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEP  258 (324)
T ss_dssp             EEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSS
T ss_pred             ccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCC
Confidence            12345899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccC-CC-CCCccc
Q 026360          160 APKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHK-SN-SELKYC  214 (240)
Q Consensus       160 ~~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~-~~-~~v~~~  214 (240)
                      +|.++|||++|||++|||+||+|.++..++..  .+.+|+.+|++|+ ++ +.|+..
T Consensus       259 l~~~~pL~~~~nvilTPHia~~t~~~~~~~~~--~~~~nl~~~l~~~~~~~n~V~~~  313 (324)
T 3evt_A          259 LPTDHPLWQRDDVLITPHISGQIAHFRATVFP--IFAANFAQFVKDGTLVRNQVDLN  313 (324)
T ss_dssp             CCTTCGGGGCSSEEECCSCTTCCCCHHHHHHH--HHHHHHHHHHHHSCCCSCBCC--
T ss_pred             CCCCChhhcCCCEEEcCccccChHHHHHHHHH--HHHHHHHHHHhCCCCCCceECcc
Confidence            99999999999999999999999999999999  9999999999765 33 667654

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=100.00  E-value=3.2e-50  Score=356.42  Aligned_cols=202  Identities=22%  Similarity=0.329  Sum_probs=181.2

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      ++||++.|++..+++.+++|.|...    .++++.|++|||||+|.||+.+|+++++||++|++||+++...+.....  
T Consensus       108 ~~~L~~~R~~~~~~~~~~~g~W~~~----~~~~l~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~--  181 (315)
T 3pp8_A          108 SQVLHWFRRFDDYQALKNQALWKPL----PEYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESY--  181 (315)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCCC----CCCCSTTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTCEEE--
T ss_pred             HHHHHHHhCChHHHHHHHhcccCCC----CCCCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhhhhh--
Confidence            4799999999999999999999754    3578999999999999999999999999999999999876433221111  


Q ss_pred             eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (240)
Q Consensus        81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  160 (240)
                      ....++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|++.||+||||++||+
T Consensus       182 ~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl  261 (315)
T 3pp8_A          182 VGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPL  261 (315)
T ss_dssp             ESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSC
T ss_pred             cccCCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCccEEEcCCCCCCCC
Confidence            11248999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC-CCCc
Q 026360          161 PKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN-SELK  212 (240)
Q Consensus       161 ~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v~  212 (240)
                      |.+||||++|||++|||+||+|.+  .++..  .+.+|+.+|++|+++ +.|+
T Consensus       262 ~~~~pL~~~~nvilTPHia~~t~~--~~~~~--~~~~ni~~~~~G~~~~~~V~  310 (315)
T 3pp8_A          262 PQESPLWRHPRVAMTPHIAAVTRP--AEAID--YISRTITQLEKGEPVTGQVD  310 (315)
T ss_dssp             CTTCGGGGCTTEEECSSCSSCCCH--HHHHH--HHHHHHHHHHHTCCCCCBCC
T ss_pred             CCCChhhcCCCEEECCCCCcccHH--HHHHH--HHHHHHHHHHcCCCCCceEC
Confidence            999999999999999999999986  45667  889999999999987 6565

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=100.00  E-value=1.1e-49  Score=356.08  Aligned_cols=204  Identities=22%  Similarity=0.394  Sum_probs=159.1

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      ++||+++|++..+++.+++|.|........+.+|.|++|||||+|.||+.+|++++++|++|++||+++..     ..++
T Consensus       136 ~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~-----~~~~  210 (340)
T 4dgs_A          136 ALMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLS-----GVDW  210 (340)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCC------CCCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCT-----TSCC
T ss_pred             HHHHHHHhChHHHHHHHhcCCcccccCcCccccccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCccc-----ccCc
Confidence            47999999999999999999997541112367999999999999999999999999999999999987643     2345


Q ss_pred             eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (240)
Q Consensus        81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  160 (240)
                      ....++++++++||+|++|+|++++|+++++++.++.||++++|||+|||+++|+++|+++|++|+|.||+||||++||+
T Consensus       211 ~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~EP~  290 (340)
T 4dgs_A          211 IAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPA  290 (340)
T ss_dssp             EECSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSCC--------------CCSSEEEESCCSSSSS
T ss_pred             eecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCcCCCCC
Confidence            55679999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC-CCCc
Q 026360          161 PKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN-SELK  212 (240)
Q Consensus       161 ~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v~  212 (240)
                      +. +|||++|||++|||+||+|.|++.++..  .+.+|+.+|++|+++ +.||
T Consensus       291 ~~-~~L~~~~nvilTPHia~~t~e~~~~~~~--~~~~nl~~~~~g~~~~~~Vn  340 (340)
T 4dgs_A          291 IR-SEFHTTPNTVLMPHQGSATVETRMAMGK--LVLANLAAHFAGEKAPNTVN  340 (340)
T ss_dssp             CC-SHHHHSSSEEECSSCSSCCHHHHHHHHH--HHHHHHHHHHTTSCCTTBC-
T ss_pred             Cc-cchhhCCCEEEcCcCCcCCHHHHHHHHH--HHHHHHHHHHcCCCCCCCcC
Confidence            76 5999999999999999999999999999  999999999999876 5554

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=100.00  E-value=3.2e-49  Score=360.60  Aligned_cols=223  Identities=25%  Similarity=0.391  Sum_probs=189.3

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      ++||+++|+++.+++.+++|.|.+..  ..+.+|+||++||||+|.||+.+|+++++|||+|++||+++....    .++
T Consensus       112 ~~~L~~~R~i~~~~~~~~~g~W~~~~--~~~~el~gktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~----~~~  185 (404)
T 1sc6_A          112 GELLLLLRGVPEANAKAHRGVGNKLA--AGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL----GNA  185 (404)
T ss_dssp             HHHHHHHHTHHHHHHHHHHTCCC-------CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCC----TTC
T ss_pred             HHHHHHHhChHHHHHHHHcCCccccC--CCccccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhcc----CCc
Confidence            47999999999999999999997542  246799999999999999999999999999999999998653321    135


Q ss_pred             eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (240)
Q Consensus        81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  160 (240)
                      ....++++++++||+|++|+|++++|+++++++.|+.||+|+++||+|||+++|+++|+++|++|++.||+||||++||+
T Consensus       186 ~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gA~lDVf~~EP~  265 (404)
T 1sc6_A          186 TQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPA  265 (404)
T ss_dssp             EECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC------
T ss_pred             eecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcCCccEEEEeecCCCCC
Confidence            56669999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CC----CCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCC-CCCCccchhhhcc--cceeEeeeCCc
Q 026360          161 PK----DHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKS-NSELKYCSYAMLR--ESRICLTDTSR  231 (240)
Q Consensus       161 ~~----~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~-~~~v~~~~~~~~~--~~r~~~~~~~~  231 (240)
                      +.    ++|||.+||+++|||+|++|.|+++++..  .+.+|+.+|++|++ .+.||.|...+..  ..|++..|.|.
T Consensus       266 ~~~~~~~~pL~~~~nvilTPHi~~~T~ea~~~~~~--~~~~nl~~~l~g~~~~~~vn~p~~~~~~~~~~rl~~~h~d~  341 (404)
T 1sc6_A          266 TNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGL--EVAGKLIKYSDNGSTLSAVNFPEVSLPLHGGRRLMHIHENR  341 (404)
T ss_dssp             ---CTTTGGGTTCTTEEEECCCSCCSHHHHHHHHH--HHHHHHHHHHHHCCCTTBSSSCCCCCCCCSSEEEEEEEESC
T ss_pred             CccccccchhhcCCCEEECCCCCCCcHHHHHHHHH--HHHHHHHHHHcCCCCcceecccccccCcCCcceEEEEeCCC
Confidence            74    57999999999999999999999999999  89999999999765 4889987655432  47888887554

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=100.00  E-value=2.4e-49  Score=357.33  Aligned_cols=210  Identities=48%  Similarity=0.820  Sum_probs=191.3

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCCCChhHHHhcC
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETG   79 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~~~~~~~~~~g   79 (240)
                      ++||++.|++..+++.+++|.|........+.+|.|++|||||+|+||+.+|++++++|++ |++||+++.+.+.+...|
T Consensus       129 ~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g  208 (364)
T 2j6i_A          129 MTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVG  208 (364)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTT
T ss_pred             HHHHHHHhChHHHHHHHHhCCCCcCcccCCcccCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcC
Confidence            4799999999999999999999642211235789999999999999999999999999997 999998776666666778


Q ss_pred             ceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 026360           80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (240)
Q Consensus        80 ~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP  159 (240)
                      +....++++++++||+|++|+|++++|+++++++.++.||+|++|||+|||+++|+++|+++|++|+|.||+||||++||
T Consensus       209 ~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g~i~gA~LDVf~~EP  288 (364)
T 2j6i_A          209 ARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQP  288 (364)
T ss_dssp             EEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSS
T ss_pred             cEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHHcCCCcEEEEecCCCCC
Confidence            77667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCC--C---CeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccC-CCCCCc
Q 026360          160 APKDHPWRYM--P---NQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHK-SNSELK  212 (240)
Q Consensus       160 ~~~~~~l~~~--~---nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~-~~~~v~  212 (240)
                      +|.++|||.+  |   ||++|||+||+|.++..++..  .+.+|+.+|++|+ ++.++|
T Consensus       289 ~~~~~pL~~~~~~~~~nvilTPHia~~t~e~~~~~~~--~~~~nl~~~~~g~~~~~~~n  345 (364)
T 2j6i_A          289 APKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQTRYAQ--GTVNILESFFTGKFDYRPQD  345 (364)
T ss_dssp             CCTTCHHHHCCCTTSCCEEECCSCGGGSHHHHHHHHH--HHHHHHHHHHTTCCCCCGGG
T ss_pred             CCCCChHHhccCCccCcEEECCccCcCCHHHHHHHHH--HHHHHHHHHHcCCCCCCCCc
Confidence            9999999999  9   999999999999999999998  8999999999998 334443

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=100.00  E-value=6.6e-49  Score=356.74  Aligned_cols=207  Identities=45%  Similarity=0.792  Sum_probs=190.6

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      ++||++.|++..+++.+++|.|........+.+|.|++|||||+|.||+.+|+++++||++|++||+++...+.+...|+
T Consensus       156 ~liL~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~  235 (393)
T 2nac_A          156 MMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNL  235 (393)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTC
T ss_pred             HHHHHHHhccHHHHHHHHcCCCCccccccCCccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCc
Confidence            47999999999999999999996422112356899999999999999999999999999999999997656666666788


Q ss_pred             eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (240)
Q Consensus        81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  160 (240)
                      ....++++++++||+|++|+|++++|+++++++.++.||+|++|||+|||+++|+++|.++|++|+|.||+||||++||+
T Consensus       236 ~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~~EP~  315 (393)
T 2nac_A          236 TWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPA  315 (393)
T ss_dssp             EECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSC
T ss_pred             eecCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCCeeEEEEEecCCCCC
Confidence            76668999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCCC
Q 026360          161 PKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSNS  209 (240)
Q Consensus       161 ~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~  209 (240)
                      +.++|||++||+++|||+|++|.++..++..  .+.+|+++|++|+++.
T Consensus       316 ~~~~pL~~~~nvilTPHia~~T~e~~~~~~~--~~~~nl~~~~~G~~~~  362 (393)
T 2nac_A          316 PKDHPWRTMPYNGMTPHISGTTLTAQARYAA--GTREILECFFEGRPIR  362 (393)
T ss_dssp             CTTCGGGTSTTBCCCCSCTTCSHHHHHHHHH--HHHHHHHHHHHTCCCC
T ss_pred             CCCChhHcCCCEEECCCCCcCcHHHHHHHHH--HHHHHHHHHHcCCCCc
Confidence            9999999999999999999999999999998  8999999999998763

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=100.00  E-value=4.2e-49  Score=352.56  Aligned_cols=206  Identities=23%  Similarity=0.307  Sum_probs=183.9

Q ss_pred             CcHHHHHhCChHHHHHHH-cCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcC
Q 026360            1 MRILILVRNFLPGHHQVI-SGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG   79 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~-~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g   79 (240)
                      ++||++.|++..+++.++ +|.|.+.. ...+.+|.|++|||||+|.||+.+|+++++||++|++||+++..   ....+
T Consensus       113 ~l~L~~~R~~~~~~~~~~~~g~~~w~~-~~~~~~l~gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~---~~~~~  188 (343)
T 2yq5_A          113 TQAMYLLRKIGEFRYRMDHDHDFTWPS-NLISNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNP---EFEPF  188 (343)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHCCCCCCG-GGCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCG---GGTTT
T ss_pred             HHHHHHHhchHHHHHHHHHcCCccccc-CCCccccCCCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhh---hhhcc
Confidence            479999999999999999 99876532 23578999999999999999999999999999999999997633   12224


Q ss_pred             ceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 026360           80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (240)
Q Consensus        80 ~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP  159 (240)
                      +... ++++++++||+|++|+|++++|+++++.+.|+.||+|++|||+|||+++|+++|+++|++|++.||+||||++||
T Consensus       189 ~~~~-~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP  267 (343)
T 2yq5_A          189 LTYT-DFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGES  267 (343)
T ss_dssp             CEEC-CHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEESCCTTGG
T ss_pred             cccc-CHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEEEecccccCC
Confidence            4554 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             --CCCC-----------CCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC-CCCcc
Q 026360          160 --APKD-----------HPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN-SELKY  213 (240)
Q Consensus       160 --~~~~-----------~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v~~  213 (240)
                        ++.+           +|||.+|||++|||+|++|.++..++..  .+.+|+.+|++|+++ +.||.
T Consensus       268 ~~~~~~~~~~~~l~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~--~~~~ni~~~l~g~~~~~~v~~  333 (343)
T 2yq5_A          268 SYFGHTGLTDSEIPEDYKTLAKMPNVVITPHSAFYTETSIRNMVQ--ICLTDQLTIAKGGRPRSIVNL  333 (343)
T ss_dssp             GTTTCCSCCTTTSCHHHHHHTTCTTEEECSSCTTCBHHHHHHHHH--HHHHHHHHHHTTCCCTTBC--
T ss_pred             CccccccccccccccchhHHhcCCCEEECCccccchHHHHHHHHH--HHHHHHHHHHcCCCCCceECC
Confidence              4555           4899999999999999999999999999  999999999999876 66653

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=100.00  E-value=1.1e-47  Score=342.92  Aligned_cols=205  Identities=24%  Similarity=0.347  Sum_probs=183.5

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      ++||++.|++..+++.+++|.|.+..  ..+.++.|++|||||+|.||+.+|++++++|++|++||+++...  +.. .+
T Consensus       113 ~l~L~~~R~~~~~~~~~~~g~w~~~~--~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~~~-~~  187 (333)
T 1j4a_A          113 IQAARILRQDKAMDEKVARHDLRWAP--TIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--LEK-KG  187 (333)
T ss_dssp             HHHHHHHHTHHHHHHHHHTTBCCCTT--CCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--HHH-TT
T ss_pred             HHHHHHHcCHHHHHHHHHcCCCccCC--cccccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--HHh-hC
Confidence            47999999999999999999996542  24678999999999999999999999999999999999876432  233 24


Q ss_pred             eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCC-
Q 026360           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP-  159 (240)
Q Consensus        81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP-  159 (240)
                      ....++++++++||+|++|+|++++|+++++++.++.||+|+++||+|||+++|+++|+++|++|+|.||+||||++|| 
T Consensus       188 ~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~  267 (333)
T 1j4a_A          188 YYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVG  267 (333)
T ss_dssp             CBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTCTT
T ss_pred             eecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCceEEEEecCCCCCC
Confidence            4445899999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             -CCCCC-----------CCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC-CCCc
Q 026360          160 -APKDH-----------PWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN-SELK  212 (240)
Q Consensus       160 -~~~~~-----------~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v~  212 (240)
                       +|.+|           |||.+|||++|||+||+|.++..++..  .+.+|+.+|++|+++ +.|+
T Consensus       268 ~l~~~~~~~~~~~p~~~~L~~~~nvilTPHia~~t~~~~~~~~~--~~~~nl~~~~~g~~~~~~v~  331 (333)
T 1j4a_A          268 IFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVV--KAFDNNLELVEGKEAETPVK  331 (333)
T ss_dssp             TTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTTCBHHHHHHHHH--HHHHHHHHHHTTCCCSSBCC
T ss_pred             ccccccccccCCccchhhHHhCCCEEECCccccCHHHHHHHHHH--HHHHHHHHHHcCCCCCcccc
Confidence             45544           599999999999999999999999999  999999999999865 5554

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.4e-47  Score=338.90  Aligned_cols=201  Identities=30%  Similarity=0.493  Sum_probs=181.3

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      ++||++.|++..+++.+++|.|....  ..+.++.|++|||||+|.||+.+|++++++|++|++||++... ..+...|+
T Consensus       132 ~l~L~~~R~~~~~~~~~~~g~W~~~~--~~~~~l~g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~  208 (335)
T 2g76_A          132 GMIMCLARQIPQATASMKDGKWERKK--FMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISP-EVSASFGV  208 (335)
T ss_dssp             HHHHHHHHTHHHHHHHHHTTCCCTGG--GCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCH-HHHHHTTC
T ss_pred             HHHHHHHhchHHHHHHHHcCCCCccC--CCCcCCCcCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCc
Confidence            47999999999999999999997432  2367899999999999999999999999999999999987533 44556787


Q ss_pred             eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (240)
Q Consensus        81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  160 (240)
                      ... ++++++++||+|++|+|++++|+++++++.++.||+|+++||+|||+++|+++|+++|++|++.||+||||+.|| 
T Consensus       209 ~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~gA~lDV~~~EP-  286 (335)
T 2g76_A          209 QQL-PLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-  286 (335)
T ss_dssp             EEC-CHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSS-
T ss_pred             eeC-CHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCccEEEEeecCCCC-
Confidence            654 899999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC
Q 026360          161 PKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN  208 (240)
Q Consensus       161 ~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~  208 (240)
                      +.++|||++||+++|||++++|.++..++..  .+.+|+.+|++|+++
T Consensus       287 ~~~~~L~~~~nvilTPH~~~~t~e~~~~~~~--~~~~nl~~~~~g~~~  332 (335)
T 2g76_A          287 PRDRALVDHENVISCPHLGASTKEAQSRCGE--EIAVQFVDMVKGKSL  332 (335)
T ss_dssp             CSCCHHHHSTTEEECSSCTTCBHHHHHHHHH--HHHHHHHHHC-----
T ss_pred             CCCchHHhCCCEEECCcCCCCCHHHHHHHHH--HHHHHHHHHHcCCCC
Confidence            5679999999999999999999999999999  999999999999875

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=1.1e-47  Score=342.82  Aligned_cols=206  Identities=24%  Similarity=0.411  Sum_probs=182.7

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCcc-CcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcC
Q 026360            1 MRILILVRNFLPGHHQVISGEWNV-AGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG   79 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~-~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g   79 (240)
                      ++||++.|++..+++.+++|.|.+ ..  ..+.++.|++|||||+|.||+.+|++++++|++|++||+++...  +.. .
T Consensus       111 ~l~L~~~R~~~~~~~~~~~g~w~~~~~--~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~~~-~  185 (333)
T 1dxy_A          111 TDTLYLLRNMGKVQAQLQAGDYEKAGT--FIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG--DHP-D  185 (333)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCHHHHTC--CCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS--CCT-T
T ss_pred             HHHHHHhhhHHHHHHHHHcCCcccccC--CCccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh--hHh-c
Confidence            479999999999999999999964 22  24678999999999999999999999999999999999876433  122 2


Q ss_pred             ceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 026360           80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (240)
Q Consensus        80 ~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP  159 (240)
                      +... ++++++++||+|++|+|++++|+++++++.++.||+|+++||+|||+++|+++|+++|++|+|.||+||||++||
T Consensus       186 ~~~~-~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP  264 (333)
T 1dxy_A          186 FDYV-SLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYET  264 (333)
T ss_dssp             CEEC-CHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHH
T ss_pred             cccC-CHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCccEEEEecCCCCC
Confidence            4444 899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             C--C--------CC---CCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC-CCCccc
Q 026360          160 A--P--------KD---HPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN-SELKYC  214 (240)
Q Consensus       160 ~--~--------~~---~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v~~~  214 (240)
                      +  +        ++   +|||.+|||++|||+||+|.++..++..  .+.+|+.+|++|+++ +.|+.+
T Consensus       265 ~~~~~~~~~~~~~~~~~~pL~~~~nvi~TPHia~~t~e~~~~~~~--~~~~nl~~~~~g~~~~~~v~~~  331 (333)
T 1dxy_A          265 EDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVY--FSLQHLVDFLTKGETSTEVTGP  331 (333)
T ss_dssp             HHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTCSHHHHHHHHH--HHHHHHHHHHHHSCCTTEECC-
T ss_pred             CcccccccccccCccchhHHhcCCCEEECCccccChHHHHHHHHH--HHHHHHHHHHcCCCCCceeCCC
Confidence            3  1        12   5899999999999999999999999999  999999999999865 666654

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=1.1e-46  Score=332.29  Aligned_cols=204  Identities=19%  Similarity=0.281  Sum_probs=185.0

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      ++||++.|++..+++.+++|.|....   ...++.|++|||||+|.||+.+|++++++|++|++||+++. ..     +.
T Consensus        92 ~~~L~~~R~~~~~~~~~~~g~w~~~~---~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~-~~-----~~  162 (303)
T 1qp8_A           92 ALLLAPYKRIIQYGEKMKRGDYGRDV---EIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK-EG-----PW  162 (303)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCCCS---CCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC-CS-----SS
T ss_pred             HHHHHHHhCHHHHHHHHHcCCCCCCC---CCCCCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc-cc-----Cc
Confidence            47999999999999999999996431   23479999999999999999999999999999999998764 21     34


Q ss_pred             eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCC-CCCC
Q 026360           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW-NPQP  159 (240)
Q Consensus        81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~-~~EP  159 (240)
                      ....++++++++||+|++|+|++++|+++++++.++.||+|+++||+|||+++|+++|.++|++|++.||++||| ++||
T Consensus       163 ~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~~~~ep  242 (303)
T 1qp8_A          163 RFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRND  242 (303)
T ss_dssp             CCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTC
T ss_pred             ccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccCCCCCC
Confidence            445689999999999999999999999999999999999999999999999999999999999999999999999 8899


Q ss_pred             CCCCCCCCCCCCeEEcCCCCCC--cHHHHHHhhhhHHHHHHHHHHHccCCC-CCCccch
Q 026360          160 APKDHPWRYMPNQAMTPHVSGT--TIDAQVIVHFFPVFMRLFTSFLSHKSN-SELKYCS  215 (240)
Q Consensus       160 ~~~~~~l~~~~nv~~TPH~a~~--t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v~~~~  215 (240)
                      ++.++|||.+||+++|||++|+  |.++..++..  .+.+|+.+|++|+++ +.|+...
T Consensus       243 ~~~~~~L~~~~nviltPH~~~~~~t~e~~~~~~~--~~~~nl~~~~~g~~~~~~v~~~~  299 (303)
T 1qp8_A          243 FAKDAEFFSLPNVVATPWVAGGYGNERVWRQMVM--EAVRNLITYATGGRPRNIAKRED  299 (303)
T ss_dssp             CGGGHHHHTSTTEEECCSCSSSSSCHHHHHHHHH--HHHHHHHHHHTTSCCSCBCCGGG
T ss_pred             CCCCChhhcCCCEEECCCcCCCCCCHHHHHHHHH--HHHHHHHHHHcCCCCCceeCHHH
Confidence            9989999999999999999998  9999999999  899999999999865 6666543

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.6e-46  Score=331.89  Aligned_cols=199  Identities=32%  Similarity=0.535  Sum_probs=184.5

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      ++||++.|++..+++.+++|.|....  ..+.++.|++|||||+|.||+.+|+.++++|++|++||+++.. +.+.+.|+
T Consensus       109 ~~~L~~~R~~~~~~~~~~~g~w~~~~--~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~g~  185 (307)
T 1wwk_A          109 GLMFSVARKIAFADRKMREGVWAKKE--AMGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERAKEVNG  185 (307)
T ss_dssp             HHHHHHHTTHHHHHHHHTTTCCCTTT--CCBCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHTTC
T ss_pred             HHHHHHHhCHHHHHHHHHcCCCCccC--cCCcccCCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhHhhcCc
Confidence            47999999999999999999997422  2357899999999999999999999999999999999997644 45566787


Q ss_pred             eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (240)
Q Consensus        81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  160 (240)
                      ... ++++++++||+|++|+|++++|+++++++.++.||+|+++||+|||+++|+++|.++|++|++.||++|||++||+
T Consensus       186 ~~~-~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~  264 (307)
T 1wwk_A          186 KFV-DLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPL  264 (307)
T ss_dssp             EEC-CHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSC
T ss_pred             ccc-CHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEecCCCCCC
Confidence            765 8999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHcc
Q 026360          161 PKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSH  205 (240)
Q Consensus       161 ~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g  205 (240)
                      +.++|||++||+++|||++++|.++..++..  .+.+|+.+|++|
T Consensus       265 ~~~~~L~~~~nviltPh~~~~t~~~~~~~~~--~~~~nl~~~~~g  307 (307)
T 1wwk_A          265 PKDHPLTKFDNVVLTPHIGASTVEAQERAGV--EVAEKVVKILKG  307 (307)
T ss_dssp             CTTCGGGGCTTEEECSSCTTCBHHHHHHHHH--HHHHHHHHHHTC
T ss_pred             CCCChHHhCCCEEECCccccCcHHHHHHHHH--HHHHHHHHHHcC
Confidence            9999999999999999999999999999999  999999999976

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=100.00  E-value=6.7e-47  Score=331.40  Aligned_cols=193  Identities=24%  Similarity=0.387  Sum_probs=176.9

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      ++||++.|++..+++.+++|.|....    ..+|.|++|||||+|.||+.+|++++++|++|++||+++...+.     +
T Consensus        91 ~~~L~~~R~~~~~~~~~~~g~w~~~~----~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----~  161 (290)
T 3gvx_A           91 ALLLAHAKNILENNELMKAGIFRQSP----TTLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV-----D  161 (290)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCCCC----CCCCTTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC-----S
T ss_pred             HHHHHHHHhhhhhhhHhhhcccccCC----ceeeecchheeeccCchhHHHHHHHHhhCcEEEEEecccccccc-----c
Confidence            47999999999999999999997542    35899999999999999999999999999999999997644322     4


Q ss_pred             eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (240)
Q Consensus        81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  160 (240)
                      ...+++++++++||+|++|+|++++|+++++++.++.||+|++|||+|||+++|+++|+++|++|++.||++|||++||+
T Consensus       162 ~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  241 (290)
T 3gvx_A          162 VISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPE  241 (290)
T ss_dssp             EECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTS
T ss_pred             cccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccCCcc
Confidence            45669999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             CCCCCCCCCCCeEEcCCCC-CCcHHHHHHhhhhHHHHHHHHHHHccCC
Q 026360          161 PKDHPWRYMPNQAMTPHVS-GTTIDAQVIVHFFPVFMRLFTSFLSHKS  207 (240)
Q Consensus       161 ~~~~~l~~~~nv~~TPH~a-~~t~~~~~~~~~~~~~~~~~~~~~~g~~  207 (240)
                         +|||.+||+++|||+| ++|.++.+++..  .+.+|+.+|++|+.
T Consensus       242 ---~pL~~~~nvilTPHiag~~t~e~~~~~~~--~~~~ni~~~~~~~~  284 (290)
T 3gvx_A          242 ---ITETNLRNAILSPHVAGGMSGEIMDIAIQ--LAFENVRNFFEGEG  284 (290)
T ss_dssp             ---CCSCCCSSEEECCSCSSCBTTBCCHHHHH--HHHHHHHHHTC---
T ss_pred             ---cchhhhhhhhcCccccCCccchHHHHHHH--HHHHHHHhhhcCCC
Confidence               8999999999999999 899999999999  89999999999874

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=100.00  E-value=7.7e-47  Score=337.09  Aligned_cols=204  Identities=25%  Similarity=0.406  Sum_probs=181.1

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      ++||++.|++..+++.+++|.|.+.. ...+.++.|++|||||+|.||+.+|++++++|++|++||+++...  +.. .+
T Consensus       112 ~l~L~~~R~~~~~~~~~~~g~w~~~~-~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~~~-~~  187 (331)
T 1xdw_A          112 TQAMMLLRHTAYTTSRTAKKNFKVDA-FMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG--IED-YC  187 (331)
T ss_dssp             HHHHHHHTTHHHHHHHHTTTCCCCCS-TTCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS--CTT-TC
T ss_pred             HHHHHHHhCHHHHHHHHHcCCCcccc-CcCccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH--HHh-cc
Confidence            47999999999999999999996411 124678999999999999999999999999999999999876433  122 24


Q ss_pred             eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (240)
Q Consensus        81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  160 (240)
                      .. .++++++++||+|++|+|++++|+++++++.++.||+|+++||+|||+++|+++|+++|++|+|.||+||||++||+
T Consensus       188 ~~-~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~  266 (331)
T 1xdw_A          188 TQ-VSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEAS  266 (331)
T ss_dssp             EE-CCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTGGG
T ss_pred             cc-CCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCceEEEEecCCCCCC
Confidence            44 48999999999999999999999999999999999999999999999999999999999999999999999999994


Q ss_pred             --CCC-------C----CCCCC-CCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC-CCC
Q 026360          161 --PKD-------H----PWRYM-PNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN-SEL  211 (240)
Q Consensus       161 --~~~-------~----~l~~~-~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v  211 (240)
                        +.+       +    |||.+ |||++|||+||+|.++..++..  .+.+|+.+|++|+++ +.|
T Consensus       267 ~~~~~~~~~~~~~~~~~~L~~~~~nvilTPHia~~t~~~~~~~~~--~~~~nl~~~~~g~~~~~~v  330 (331)
T 1xdw_A          267 VFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNMVE--VSYQNLKDLAETGDCPNKI  330 (331)
T ss_dssp             TTTCCCTTSCCSSHHHHHHHHTTTTEEECCSCTTCSHHHHHHHHH--HHHHHHHHHHHHSCCTTBC
T ss_pred             cccccccccccCccchHHHHhCCCCEEEcCccccChHHHHHHHHH--HHHHHHHHHHcCCCCCCCC
Confidence              332       3    79999 9999999999999999999999  999999999999865 444

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=8.4e-46  Score=329.00  Aligned_cols=203  Identities=26%  Similarity=0.394  Sum_probs=185.3

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCc-ccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcC-CCCChhHHHhc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAG-VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDR-VKMDPQLEKET   78 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~-~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~-~~~~~~~~~~~   78 (240)
                      ++||++.|++..+++.+++|.|.... ....+.++.|++|||||+|.||+.+|++++++|++|++||+ ++.. ..+...
T Consensus       110 ~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~~  188 (320)
T 1gdh_A          110 LLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASS-SDEASY  188 (320)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCH-HHHHHH
T ss_pred             HHHHHHHccHHHHHHHHHcCCCCccccccccCcCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcCh-hhhhhc
Confidence            47999999999999999999996321 11246789999999999999999999999999999999999 7643 445556


Q ss_pred             CceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCC
Q 026360           79 GAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ  158 (240)
Q Consensus        79 g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~E  158 (240)
                      |+....++++++++||+|++|+|++++|+++++++.++.||+|+++||+|||+++|+++|.++|++|++.||++|||+.|
T Consensus       189 g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~gA~lDv~~~e  268 (320)
T 1gdh_A          189 QATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGE  268 (320)
T ss_dssp             TCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTT
T ss_pred             CcEEcCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            87766689999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC
Q 026360          159 PAPKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN  208 (240)
Q Consensus       159 P~~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~  208 (240)
                      | +.++|||++||+++|||++++|.++..++..  .+ +|+.+|++|+++
T Consensus       269 P-~~~~~L~~~~nviltPH~~~~t~~~~~~~~~--~~-~nl~~~~~g~~~  314 (320)
T 1gdh_A          269 P-NINEGYYDLPNTFLFPHIGSAATQAREDMAH--QA-NDLIDALFGGAD  314 (320)
T ss_dssp             T-SCCTTGGGCTTEEECSSCTTCBHHHHHHHHH--HH-HHHHHHHHTTSC
T ss_pred             C-CCCChhhhCCCEEECCcCCcCcHHHHHHHHH--HH-HHHHHHHcCCCC
Confidence            9 8899999999999999999999999999998  88 999999999865

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=100.00  E-value=1.6e-45  Score=330.25  Aligned_cols=208  Identities=26%  Similarity=0.381  Sum_probs=186.9

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcc-----cccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHH
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGV-----AYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE   75 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~-----~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~   75 (240)
                      ++||++.|++..+++.+++|.|.....     .....++.|++|||||+|.||+.+|++++++|++|++||++... ...
T Consensus       128 ~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~  206 (347)
T 1mx3_A          128 CHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSD-GVE  206 (347)
T ss_dssp             HHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCT-THH
T ss_pred             HHHHHHHHhHHHHHHHHHcCCcccccccccccccCccCCCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcch-hhH
Confidence            479999999999999999999953210     01125899999999999999999999999999999999987543 334


Q ss_pred             HhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCC
Q 026360           76 KETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (240)
Q Consensus        76 ~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~  155 (240)
                      ...|+..+.++++++++||+|++|+|++++|+++++++.++.||+|++|||+|||+++|+++|.++|++|++.||++|||
T Consensus       207 ~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~  286 (347)
T 1mx3_A          207 RALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVH  286 (347)
T ss_dssp             HHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCC
T ss_pred             hhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCcEEEEeec
Confidence            55677766789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC-CCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCCCCC
Q 026360          156 NPQPAP-KDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSNSEL  211 (240)
Q Consensus       156 ~~EP~~-~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~v  211 (240)
                      +.||.+ .++|||.+||+++|||++++|.++..++..  .+.+|+.+|++|+++..+
T Consensus       287 ~~EP~~~~~~~L~~~~nvi~tPHia~~t~~~~~~~~~--~~~~ni~~~~~g~~~~~l  341 (347)
T 1mx3_A          287 ESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMRE--EAAREIRRAITGRIPDSL  341 (347)
T ss_dssp             SSSSCCTTSSTTTTCSSEEECSSCTTCCHHHHHHHHH--HHHHHHHHHHHSCTTTTC
T ss_pred             ccCCCCCCCchHHhCCCEEEEchHHHHHHHHHHHHHH--HHHHHHHHHHcCCCCccc
Confidence            999987 478999999999999999999999999999  999999999999876543

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=100.00  E-value=6.2e-46  Score=328.91  Aligned_cols=199  Identities=21%  Similarity=0.328  Sum_probs=184.2

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      ++||++.|++..+++.+++|.|..    ..+.++.|++|||||+|.||+.+|+.++++|++|++||+++.. ..+...|+
T Consensus       111 ~~~L~~~R~~~~~~~~~~~g~w~~----~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~g~  185 (313)
T 2ekl_A          111 GLMIAAARKMYTSMALAKSGIFKK----IEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIR-EKAEKINA  185 (313)
T ss_dssp             HHHHHHHHTHHHHHHHHHTTCCCC----CCCCCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHTTC
T ss_pred             HHHHHHHhCHHHHHHHHHcCCCCC----CCCCCCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcch-hHHHhcCc
Confidence            479999999999999999999962    2367899999999999999999999999999999999997643 34556787


Q ss_pred             eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (240)
Q Consensus        81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  160 (240)
                      ... ++++++++||+|++|+|++++|+++++++.++.||+|+++||+|||+++|+++|.++|++|++.||++|||++||+
T Consensus       186 ~~~-~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~  264 (313)
T 2ekl_A          186 KAV-SLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPP  264 (313)
T ss_dssp             EEC-CHHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEEEEEESCCSSSSC
T ss_pred             eec-CHHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCcEEEEecCCCCCC
Confidence            764 8999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCC---CCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC
Q 026360          161 PKDH---PWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN  208 (240)
Q Consensus       161 ~~~~---~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~  208 (240)
                      + ++   |||++||+++|||++++|.++..++..  .+.+|+.+|++|+++
T Consensus       265 ~-~~~~~~L~~~~nviltPH~~~~t~~~~~~~~~--~~~~n~~~~~~g~~l  312 (313)
T 2ekl_A          265 K-EEWELELLKHERVIVTTHIGAQTKEAQKRVAE--MTTQNLLNAMKELGM  312 (313)
T ss_dssp             C-SHHHHHHHHSTTEEECCSCTTCSHHHHHHHHH--HHHHHHHHHHHHTTC
T ss_pred             C-CcccchHhhCCCEEECCccCcCcHHHHHHHHH--HHHHHHHHHHcCCCC
Confidence            8 56   999999999999999999999999999  999999999999875

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=100.00  E-value=6.5e-45  Score=322.10  Aligned_cols=198  Identities=31%  Similarity=0.534  Sum_probs=181.0

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCc-ccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcC
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAG-VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG   79 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~-~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g   79 (240)
                      ++||++.|++..+++.+++|.|.... ....+.++.|++|||||+|.||+.+|++++++|++|++||+++....      
T Consensus       108 ~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~------  181 (311)
T 2cuk_A          108 ALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP------  181 (311)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS------
T ss_pred             HHHHHHHcChHHHHHHHHcCCCCccccccccCcCCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc------
Confidence            47999999999999999999996321 11235689999999999999999999999999999999998764432      


Q ss_pred             ceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 026360           80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (240)
Q Consensus        80 ~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP  159 (240)
                      +. ..++++++++||+|++|+|++++|+++++++.++.||+|+++||+|||+++|+++|.++|+ |++.||++|||++||
T Consensus       182 ~~-~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~-g~i~ga~lDv~~~eP  259 (311)
T 2cuk_A          182 YP-FLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDPEP  259 (311)
T ss_dssp             SC-BCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT-TTSSEEEESSCSSSS
T ss_pred             cc-cCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHh-CcCCEEEEeeCCCCC
Confidence            22 3589999999999999999999999999999999999999999999999999999999999 999999999999999


Q ss_pred             CCCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC
Q 026360          160 APKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN  208 (240)
Q Consensus       160 ~~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~  208 (240)
                      ++.++|||++||+++|||++++|.++..++..  .+.+|+.+|++|+++
T Consensus       260 ~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~--~~~~nl~~~~~g~~~  306 (311)
T 2cuk_A          260 LPPGHPLYALPNAVITPHIGSAGRTTRERMAE--VAVENLLAVLEGREP  306 (311)
T ss_dssp             CCTTSGGGGCTTEEECCSCTTCBHHHHHHHHH--HHHHHHHHHHTTCCC
T ss_pred             CCCCChhhhCCCEEECCcCCCCCHHHHHHHHH--HHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999  999999999999865

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=100.00  E-value=1.2e-44  Score=322.95  Aligned_cols=202  Identities=24%  Similarity=0.405  Sum_probs=183.8

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      ++||++.|++..+++.+++|.|.... ...+.++.|++|||||+|.||+.+|+.++++|++|++||+++....     |+
T Consensus       130 ~l~L~~~R~~~~~~~~~~~g~w~~~~-~~~~~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~-----g~  203 (333)
T 3ba1_A          130 GLILAVLRRICECDKYVRRGAWKFGD-FKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNT-----NY  203 (333)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTGGGGCC-CCCCCCCTTCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTC-----CS
T ss_pred             HHHHHHHhCHHHHHHHHHcCCCCccc-cccccccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhcc-----Cc
Confidence            47999999999999999999997422 1235789999999999999999999999999999999998764321     55


Q ss_pred             eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (240)
Q Consensus        81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  160 (240)
                      ....++++++++||+|++|+|.+++|+++++++.++.||++++|||+|||.++|+++|.++|++|++.||++|||++||.
T Consensus       204 ~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~  283 (333)
T 3ba1_A          204 TYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPE  283 (333)
T ss_dssp             EEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCTTTTC
T ss_pred             eecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCCCCCC
Confidence            55568999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC-CCC
Q 026360          161 PKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN-SEL  211 (240)
Q Consensus       161 ~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v  211 (240)
                      +. +|||.+||+++|||+++.|.++..++..  .+.+|+.+|++|+++ +.|
T Consensus       284 ~~-~~L~~~~nviltPH~~~~t~e~~~~~~~--~~~~nl~~~~~g~~~~~~V  332 (333)
T 3ba1_A          284 VP-EKLFGLENVVLLPHVGSGTVETRKVMAD--LVVGNLEAHFSGKPLLTPV  332 (333)
T ss_dssp             CC-GGGGGCTTEEECSSCTTCSHHHHHHHHH--HHHHHHHHHHHTCCCSSBC
T ss_pred             Cc-chhhcCCCEEECCcCCCCCHHHHHHHHH--HHHHHHHHHHcCCCCCCCC
Confidence            76 8999999999999999999999999999  999999999999865 444

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=100.00  E-value=3.5e-44  Score=321.92  Aligned_cols=211  Identities=25%  Similarity=0.328  Sum_probs=189.6

Q ss_pred             CcHHHHHhCChHHHHHHHcCC---CccCc--ccccccccCCCeEEEEccChHHHHHHHHhc-cCCCEEEEEcCCCCChhH
Q 026360            1 MRILILVRNFLPGHHQVISGE---WNVAG--VAYRAYDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKMDPQL   74 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~---w~~~~--~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~-~~G~~V~~~d~~~~~~~~   74 (240)
                      ++||++.|++..+++.+++|.   |....  ....+.+|.|++|||||+|.||+.+|+.++ ++|++|++||+++...+.
T Consensus       123 ~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~~~~~~~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~  202 (348)
T 2w2k_A          123 YLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAET  202 (348)
T ss_dssp             HHHHHHHHTHHHHHHHHTTCCHHHHHHHHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHH
T ss_pred             HHHHHHHhChHHHHHHHHcCCCcccccccccccccCcCCCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhh
Confidence            479999999999999999999   94211  012357899999999999999999999999 999999999998766555


Q ss_pred             HHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeC
Q 026360           75 EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV  154 (240)
Q Consensus        75 ~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV  154 (240)
                      +.+.|+....++++++++||+|++|+|.+++|+++++++.++.||++++|||+|||+++|+++|.++|++|++.||++||
T Consensus       203 ~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv  282 (348)
T 2w2k_A          203 EKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDV  282 (348)
T ss_dssp             HHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESS
T ss_pred             HhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEecc
Confidence            55567776668999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC-CCCccc
Q 026360          155 WNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN-SELKYC  214 (240)
Q Consensus       155 ~~~EP~~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v~~~  214 (240)
                      |++|| +.++||+.+||+++|||+++.|.++..++..  .+.+|+.+|++|+++ +.||.+
T Consensus       283 ~~~EP-~~~~~L~~~~nviltPH~~~~t~e~~~~~~~--~~~~ni~~~~~g~~~~~~v~~~  340 (348)
T 2w2k_A          283 HEFEP-QVSKELIEMKHVTLTTHIGGVAIETFHEFER--LTMTNIDRFLLQGKPLLTPAGK  340 (348)
T ss_dssp             CTTTT-SCCHHHHTSSSEEECCSCTTCSHHHHHHHHH--HHHHHHHHHHHTCCCCSSBCSC
T ss_pred             CCCCC-CCCchhhcCCCEEEcCcCCCCCHHHHHHHHH--HHHHHHHHHHcCCCCcceeccc
Confidence            99999 6678899999999999999999999999999  899999999999754 777754

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=100.00  E-value=2e-43  Score=314.95  Aligned_cols=209  Identities=29%  Similarity=0.444  Sum_probs=189.3

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccC-cccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcC
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVA-GVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG   79 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~-~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g   79 (240)
                      ++||++.|++..+++.+++|.|... .....+.++.|++|||||+|.||+.+|+.++++|++|++||+++...+.....|
T Consensus       119 ~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g  198 (330)
T 2gcg_A          119 SLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQ  198 (330)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCTTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTT
T ss_pred             HHHHHHHhCHHHHHHHHHcCCCcccCcccccCcCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcC
Confidence            4799999999999999999999642 111235789999999999999999999999999999999998765555555667


Q ss_pred             ceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 026360           80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (240)
Q Consensus        80 ~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP  159 (240)
                      +... ++++++++||+|++|+|.+++++++++++.++.||+|+++||+|||+++|+++|.++|++|++.||++|||++||
T Consensus       199 ~~~~-~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~ep  277 (330)
T 2gcg_A          199 AEFV-STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEP  277 (330)
T ss_dssp             CEEC-CHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSS
T ss_pred             ceeC-CHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccEEEeCCCCCCC
Confidence            7766 899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC-CCCc
Q 026360          160 APKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN-SELK  212 (240)
Q Consensus       160 ~~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v~  212 (240)
                      ++.++|||.++|+++|||+|+.|.++..++..  .+.+|+.+|++|+++ +.||
T Consensus       278 l~~~~~l~~~~nvi~tPh~~~~t~~~~~~~~~--~~~~n~~~~~~g~~~~~~v~  329 (330)
T 2gcg_A          278 LPTNHPLLTLKNCVILPHIGSATHRTRNTMSL--LAANNLLAGLRGEPMPSELK  329 (330)
T ss_dssp             CCTTCGGGGCTTEEECCSCTTCBHHHHHHHHH--HHHHHHHHHHHTCCCTTEEC
T ss_pred             CCCCChhhcCCCEEECCCCCCCcHHHHHHHHH--HHHHHHHHHHcCCCCCCCCC
Confidence            99999999999999999999999999999999  899999999999875 4443

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=100.00  E-value=2.1e-43  Score=315.12  Aligned_cols=208  Identities=31%  Similarity=0.523  Sum_probs=186.4

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccc----cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRA----YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK   76 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~----~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~   76 (240)
                      ++||++.|++..+++.+++|.|........+    .+|.|++|||||+|.||+.+|+.++++|++|++||+++.. +.+.
T Consensus       107 ~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~  185 (333)
T 2d0i_A          107 GLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEK  185 (333)
T ss_dssp             HHHHHHHHCHHHHHHHHHTTCCCCHHHHHTTSCCCCCSTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHH
T ss_pred             HHHHHHHhHHHHHHHHHHcCCCCcCcccccCCcccCCCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhhh
Confidence            4799999999999999999999531101124    6899999999999999999999999999999999997643 4445


Q ss_pred             hcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCC
Q 026360           77 ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (240)
Q Consensus        77 ~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~  156 (240)
                      ..|+... ++++++++||+|++|+|.+++++++++++.++.||++ ++||+|||.++|+++|.++|++|++.||++|||+
T Consensus       186 ~~g~~~~-~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv~~  263 (333)
T 2d0i_A          186 ELKARYM-DIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFE  263 (333)
T ss_dssp             HHTEEEC-CHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESCCS
T ss_pred             hcCceec-CHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecCCC
Confidence            5677655 8999999999999999999999999998889999999 9999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCC-CeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC-CCCccc
Q 026360          157 PQPAPKDHPWRYMP-NQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN-SELKYC  214 (240)
Q Consensus       157 ~EP~~~~~~l~~~~-nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v~~~  214 (240)
                      +||.+ ++|||.+| |+++|||+++.|.++..++..  .+.+|+.+|++|+++ +.|+..
T Consensus       264 ~EP~~-~~~L~~~~~nviltPh~~~~t~~~~~~~~~--~~~~n~~~~~~g~~~~~~v~~~  320 (333)
T 2d0i_A          264 KEPVR-EHELFKYEWETVLTPHYAGLALEAQEDVGF--RAVENLLKVLRGEVPEDLVNKE  320 (333)
T ss_dssp             SSSCS-CCGGGGCTTTEEECCSCTTCCHHHHHHHHH--HHHHHHHHHHTTCCCTTBSCTT
T ss_pred             CCCCC-CchHHcCCCCEEEcCccCCCcHHHHHHHHH--HHHHHHHHHHcCCCCcCccCHH
Confidence            99988 89999999 999999999999999999999  999999999999865 666643

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=100.00  E-value=3.7e-43  Score=313.65  Aligned_cols=208  Identities=31%  Similarity=0.533  Sum_probs=186.9

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCc----c-CcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHH
Q 026360            1 MRILILVRNFLPGHHQVISGEWN----V-AGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE   75 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~----~-~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~   75 (240)
                      ++||++.|++..+++.+++|.|.    . ......+.++.|++|||||+|.||+.+|+.++++|++|++||+++.. +..
T Consensus       110 ~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~  188 (334)
T 2dbq_A          110 ALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVE  188 (334)
T ss_dssp             HHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHH
T ss_pred             HHHHHHHhCHHHHHHHHHcCCCcccccccccccccccCCCCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhH
Confidence            47999999999999999999996    1 11112357899999999999999999999999999999999997644 444


Q ss_pred             HhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCC
Q 026360           76 KETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (240)
Q Consensus        76 ~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~  155 (240)
                      ...|+.. .++++++++||+|++|+|.+++++++++++.++.||+++++||+|||.++|+++|.++|++|++.||++|||
T Consensus       189 ~~~g~~~-~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~  267 (334)
T 2dbq_A          189 RELNAEF-KPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVF  267 (334)
T ss_dssp             HHHCCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCC
T ss_pred             hhcCccc-CCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCC
Confidence            5567765 489999999999999999999999999988999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC-CCCcc
Q 026360          156 NPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN-SELKY  213 (240)
Q Consensus       156 ~~EP~~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v~~  213 (240)
                      ++|| +.++|||.+||+++|||+++.|.++..++..  .+.+|+.+|++|+++ +.||.
T Consensus       268 ~~EP-~~~~~L~~~~~vi~tPh~~~~t~~~~~~~~~--~~~~n~~~~~~g~~~~~~v~~  323 (334)
T 2dbq_A          268 EEEP-YYNEELFKLDNVVLTPHIGSASFGAREGMAE--LVAKNLIAFKRGEIPPTLVNR  323 (334)
T ss_dssp             SSSS-CCCHHHHHCTTEEECSSCTTCSHHHHHHHHH--HHHHHHHHHHTTCCCTTBSCT
T ss_pred             CCCC-CCCchhhcCCCEEECCccCCCcHHHHHHHHH--HHHHHHHHHHcCCCCccccCH
Confidence            9999 8889999999999999999999999999999  999999999999865 66663

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=100.00  E-value=1.3e-40  Score=313.58  Aligned_cols=207  Identities=29%  Similarity=0.473  Sum_probs=188.2

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      ++||+++|+++.+++.+++|.|....  +.+.+|.|+++||||+|.||+++|+.|+++|++|++||++. ..+.+...|+
T Consensus       109 ~~~l~~~R~~~~~~~~~~~g~w~~~~--~~~~~l~g~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g~  185 (529)
T 1ygy_A          109 ALLLAASRQIPAADASLREHTWKRSS--FSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYV-SPARAAQLGI  185 (529)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCGGG--CCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS-CHHHHHHHTC
T ss_pred             HHHHHHHhhhHHHHHHHHhCCCcccC--cCccccCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCC-ChhHHHhcCc
Confidence            47999999999999999999997532  24678999999999999999999999999999999999876 4455666788


Q ss_pred             eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (240)
Q Consensus        81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  160 (240)
                      ... ++++++++||+|++|+|.+++|+++++++.++.||+|+++||+|||+++|+++|+++|++|++.||++|||+.||.
T Consensus       186 ~~~-~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~  264 (529)
T 1ygy_A          186 ELL-SLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPC  264 (529)
T ss_dssp             EEC-CHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSC
T ss_pred             EEc-CHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCC
Confidence            766 8999999999999999999999999998899999999999999999999999999999999999999999999996


Q ss_pred             CCCCCCCCCCCeEEcCCCCCCcHHHHHHhhhhHHHHHHHHHHHccCCC-CCCccc
Q 026360          161 PKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVFMRLFTSFLSHKSN-SELKYC  214 (240)
Q Consensus       161 ~~~~~l~~~~nv~~TPH~a~~t~~~~~~~~~~~~~~~~~~~~~~g~~~-~~v~~~  214 (240)
                       .++|||+++|+++|||.+|+|.++.+++..  .+.+++.+|+.|++. +.++-+
T Consensus       265 -~~~~L~~~~~vilTPh~~~~t~ea~~~~~~--~~~~~l~~~l~~~~~~~~v~~~  316 (529)
T 1ygy_A          265 -TDSPLFELAQVVVTPHLGASTAEAQDRAGT--DVAESVRLALAGEFVPDAVNVG  316 (529)
T ss_dssp             -SCCGGGGCTTEEECSSCSSCBHHHHHHHHH--HHHHHHHHHHTTCCCTTBCSCC
T ss_pred             -CCchHHhCCCEEEccccCCCCHHHHHHHHH--HHHHHHHHHHcCCCCCcccCCc
Confidence             689999999999999999999999999998  899999999999864 445433

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=100.00  E-value=8.3e-42  Score=308.26  Aligned_cols=168  Identities=23%  Similarity=0.430  Sum_probs=151.5

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChh----hh
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK----TR  107 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~----t~  107 (240)
                      .+|.|++|||||+|.||+.+|++++++|++|++||+..   + ....+. ...++++++++||+|++|+|++++    |+
T Consensus       115 ~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~---~-~~~~~~-~~~sl~ell~~aDiV~l~~Plt~~g~~~T~  189 (381)
T 3oet_A          115 FSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPR---A-ARGDEG-DFRTLDELVQEADVLTFHTPLYKDGPYKTL  189 (381)
T ss_dssp             CCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHH---H-HTTCCS-CBCCHHHHHHHCSEEEECCCCCCSSTTCCT
T ss_pred             CccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCh---H-HhccCc-ccCCHHHHHhhCCEEEEcCcCCccccccch
Confidence            47899999999999999999999999999999999742   1 111233 345899999999999999999999    99


Q ss_pred             hcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHH
Q 026360          108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQV  187 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nv~~TPH~a~~t~~~~~  187 (240)
                      ++++.+.|+.||+|+++||+|||+++|+++|+++|++|++.||+||||++||++. ++||.++ +++|||+||+|.|++.
T Consensus       190 ~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e~EP~~~-~~L~~~~-~i~TPHiag~t~e~~~  267 (381)
T 3oet_A          190 HLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLN-VALLEAV-DIGTSHIAGYTLEGKA  267 (381)
T ss_dssp             TSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSCC-HHHHHHS-SEECSSCTTCCHHHHH
T ss_pred             hhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEEEeeccccCCCCc-chhhhCC-EEECCccCcCcHHHHH
Confidence            9999999999999999999999999999999999999999999999999999875 4688764 8999999999999999


Q ss_pred             HhhhhHHHHHHHHHHHccCCC
Q 026360          188 IVHFFPVFMRLFTSFLSHKSN  208 (240)
Q Consensus       188 ~~~~~~~~~~~~~~~~~g~~~  208 (240)
                      ++..  .+.+|+.+|+++.+.
T Consensus       268 ~~~~--~~~~~l~~~l~~~~~  286 (381)
T 3oet_A          268 RGTT--QVFEAYSAFIGREQR  286 (381)
T ss_dssp             HHHH--HHHHHHHHHTTCCCC
T ss_pred             HHHH--HHHHHHHHHHcCCcc
Confidence            9999  899999999988543

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=100.00  E-value=4.5e-40  Score=297.41  Aligned_cols=168  Identities=26%  Similarity=0.463  Sum_probs=152.0

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChh----hh
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEK----TR  107 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~----t~  107 (240)
                      .++.|++|||||+|+||+.+|++|+++|++|++||++..   . ...+.. ..++++++++||+|++|+|++++    |+
T Consensus       112 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~---~-~~~g~~-~~~l~ell~~aDvV~l~~Plt~~g~~~T~  186 (380)
T 2o4c_A          112 ADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQ---A-REPDGE-FVSLERLLAEADVISLHTPLNRDGEHPTR  186 (380)
T ss_dssp             CCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHH---H-HSTTSC-CCCHHHHHHHCSEEEECCCCCSSSSSCCT
T ss_pred             cccCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChh---h-hccCcc-cCCHHHHHHhCCEEEEeccCccccccchh
Confidence            478999999999999999999999999999999997531   1 123443 35899999999999999999999    99


Q ss_pred             hcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHH
Q 026360          108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQV  187 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nv~~TPH~a~~t~~~~~  187 (240)
                      ++++++.++.||+|+++||+|||+++|+++|+++|++|++.||+||||++||.+ +++|+. +|+++|||+||+|.++..
T Consensus       187 ~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~~~EP~~-~~~l~~-~nvi~TPHiag~t~e~~~  264 (380)
T 2o4c_A          187 HLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQA-DPELAA-RCLIATPHIAGYSLEGKL  264 (380)
T ss_dssp             TSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSC-CHHHHT-TCSEECSSCTTCCHHHHH
T ss_pred             hhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCceEEeeeeccCCCC-chhhcc-CCEEEccccCcCCHHHHH
Confidence            999999999999999999999999999999999999999999999999999965 456776 599999999999999999


Q ss_pred             HhhhhHHHHHHHHHHHccCCC
Q 026360          188 IVHFFPVFMRLFTSFLSHKSN  208 (240)
Q Consensus       188 ~~~~~~~~~~~~~~~~~g~~~  208 (240)
                      ++..  .+.+|+.+|++|++.
T Consensus       265 ~~~~--~~~~nl~~~l~g~~~  283 (380)
T 2o4c_A          265 RGTA--QIYQAYCAWRGIAER  283 (380)
T ss_dssp             HHHH--HHHHHHHHHHTCCCC
T ss_pred             HHHH--HHHHHHHHHHcCCCc
Confidence            9999  899999999999863

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=99.97  E-value=1.3e-31  Score=247.87  Aligned_cols=190  Identities=13%  Similarity=0.120  Sum_probs=161.2

Q ss_pred             HHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCC
Q 026360            6 LVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEED   85 (240)
Q Consensus         6 ~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~   85 (240)
                      +.|++....+.+++| |...    .+.++.|++|||||+|.||+.+|++++++|++|++||+++.....+...|+.. .+
T Consensus       232 l~r~~~~~~~~l~~g-w~r~----~~~~l~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~-~~  305 (479)
T 1v8b_A          232 KYDNVYGCRHSLPDG-LMRA----TDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VT  305 (479)
T ss_dssp             TTHHHHHHHHHHHHH-HHHH----HCCCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CC
T ss_pred             HHhchHhHHHHHhhh-hhhc----cccccCCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEe-cC
Confidence            347777777788888 8532    34579999999999999999999999999999999999754333444567765 48


Q ss_pred             HHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcc-cCHHHHHH--HHHhCCccEEEeeCCCCCCCCC
Q 026360           86 LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI-MDTQAVVD--ACSSGHIAGYSGDVWNPQPAPK  162 (240)
Q Consensus        86 l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~-vd~~aL~~--aL~~g~i~ga~lDV~~~EP~~~  162 (240)
                      +++++++||+|++|+    .++++++.+.++.||+|++|||+|||++ ||+++|.+  +|++|+|. +++|||   |+|.
T Consensus       306 l~ell~~aDiVi~~~----~t~~lI~~~~l~~MK~gailiNvgrg~~EId~~aL~~~~AL~~g~I~-a~lDv~---plp~  377 (479)
T 1v8b_A          306 LDEIVDKGDFFITCT----GNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVK-PQVDRI---TLPN  377 (479)
T ss_dssp             HHHHTTTCSEEEECC----SSSSSBCHHHHTTCCTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEE-TTEEEE---ECTT
T ss_pred             HHHHHhcCCEEEECC----ChhhhcCHHHHhhcCCCcEEEEeCCCCccccchhhhccccceeeeEe-eeEEEE---ECCC
Confidence            999999999999995    5789999999999999999999999999 99999999  99999999 899997   4566


Q ss_pred             CCCCCCC--CCeEEcCCCC-CCcHH-HHHHhhhhHHHHHHHHHHHccC--CC-CCCc
Q 026360          163 DHPWRYM--PNQAMTPHVS-GTTID-AQVIVHFFPVFMRLFTSFLSHK--SN-SELK  212 (240)
Q Consensus       163 ~~~l~~~--~nv~~TPH~a-~~t~~-~~~~~~~~~~~~~~~~~~~~g~--~~-~~v~  212 (240)
                      ++|+|.+  ||+++| |+| |++.+ ...+++.  .+.+|+..|++|+  ++ +.|+
T Consensus       378 ~~~l~~l~~~nvv~t-H~atghp~e~~~~s~a~--~~~~ni~~~~~g~~~~l~n~V~  431 (479)
T 1v8b_A          378 GNKIIVLARGRLLNL-GCATGHPAFVMSFSFCN--QTFAQLDLWQNKDTNKYENKVY  431 (479)
T ss_dssp             SCEEEEEGGGSBHHH-HSSCCSCHHHHHHHHHH--HHHHHHHHHHTTTSSSCCSSEE
T ss_pred             CCeeeEecCCCEEEE-eccCCCCchhHHHHHHH--HHHHHHHHHHcCCCCcCCcceE
Confidence            8899999  999999 999 77766 5677777  7899999999998  66 4444

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=99.97  E-value=7.8e-32  Score=250.22  Aligned_cols=189  Identities=14%  Similarity=0.121  Sum_probs=156.3

Q ss_pred             HHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCC
Q 026360            6 LVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEED   85 (240)
Q Consensus         6 ~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~   85 (240)
                      +.|++....+.+.+| |...    .+.++.|++|||||+|.||+.+|++++++|++|++||+++.....+...|+... +
T Consensus       252 l~r~~~~~~~~l~~g-w~~~----~g~~L~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~~-~  325 (494)
T 3d64_A          252 KFDNLYGCRESLVDG-IKRA----TDVMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVV-T  325 (494)
T ss_dssp             HHHHHHHHHTTHHHH-HHHH----HCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEEC-C
T ss_pred             HHhhhHhhhhhhhhh-hhhc----cccccCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEeC-C
Confidence            346666666666666 7532    356899999999999999999999999999999999997533223344577654 8


Q ss_pred             HHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcc-cCHHHHHHHHHhCCccEEEeeCCCCCCCCCCC
Q 026360           86 LDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI-MDTQAVVDACSSGHIAGYSGDVWNPQPAPKDH  164 (240)
Q Consensus        86 l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~-vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~  164 (240)
                      +++++++||+|++|+    .|+++++.+.++.||+|++|||+|||++ ||+++| ++|++|+|. +++|   .+|+|.++
T Consensus       326 l~ell~~aDiVi~~~----~t~~lI~~~~l~~MK~gAilINvgrg~veID~~aL-~AL~~g~I~-~~~D---v~plp~~~  396 (494)
T 3d64_A          326 MEYAADKADIFVTAT----GNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVAST-RQYQWENIK-PQVD---HIIFPDGK  396 (494)
T ss_dssp             HHHHTTTCSEEEECS----SSSCSBCHHHHHHCCTTEEEEECSSSSCSBCCGGG-TTSEEEEEE-TTEE---EEECTTSC
T ss_pred             HHHHHhcCCEEEECC----CcccccCHHHHhhCCCCcEEEEcCCCcchhchHHH-HhhhcCccc-eeEE---EEECCCCC
Confidence            999999999999998    4789999999999999999999999999 699999 999999998 4455   55778889


Q ss_pred             CCCCC--CCeEEcCCCC-CCcHH-HHHHhhhhHHHHHHHHHHHccCCC-CCCc
Q 026360          165 PWRYM--PNQAMTPHVS-GTTID-AQVIVHFFPVFMRLFTSFLSHKSN-SELK  212 (240)
Q Consensus       165 ~l~~~--~nv~~TPH~a-~~t~~-~~~~~~~~~~~~~~~~~~~~g~~~-~~v~  212 (240)
                      |||.+  ||+++| |+| |++.+ ...+++.  .+.+|+..|++|+++ +.|+
T Consensus       397 pL~~l~~~nvv~t-H~atg~~~~~~~~~~a~--~~~~ni~~~~~g~~~~n~V~  446 (494)
T 3d64_A          397 RVILLAEGRLVNL-GCATGHPSFVMSNSFTN--QTLAQIELFTRGGEYANKVY  446 (494)
T ss_dssp             EEEEEGGGSBHHH-HTSCCSCHHHHHHHHHH--HHHHHHHHHHHGGGSCSSEE
T ss_pred             chhhcCCCCEEEE-eCcCCCCHHHHHHHHHH--HHHHHHHHHHcCCCCCCcee
Confidence            99999  999999 999 66755 6677777  889999999999865 5553

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=99.84  E-value=1e-21  Score=182.65  Aligned_cols=164  Identities=15%  Similarity=0.118  Sum_probs=136.8

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~  111 (240)
                      ..+.|++|+|+|+|.||+.+|+.++++|++|+++|+++...+.+.+.|+.. .+++++++++|+|+.|++    +.++++
T Consensus       270 ~~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~-~~l~e~l~~aDvVi~atg----t~~~i~  344 (494)
T 3ce6_A          270 ALIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDV-VTVEEAIGDADIVVTATG----NKDIIM  344 (494)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHGGGCSEEEECSS----SSCSBC
T ss_pred             CCCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEE-ecHHHHHhCCCEEEECCC----CHHHHH
Confidence            368999999999999999999999999999999999765555667778875 489999999999999986    456788


Q ss_pred             HHHHccCCCCCEEEEcCCCcc-cCHHHHHH-HHHhCCccEEEeeCCCCCCCCCCCC--CCCCCCeE----EcCCCCCCcH
Q 026360          112 KDRIAKMKKGVLIVNNARGAI-MDTQAVVD-ACSSGHIAGYSGDVWNPQPAPKDHP--WRYMPNQA----MTPHVSGTTI  183 (240)
Q Consensus       112 ~~~l~~mk~gailIN~srg~~-vd~~aL~~-aL~~g~i~ga~lDV~~~EP~~~~~~--l~~~~nv~----~TPH~a~~t~  183 (240)
                      .+.++.||+|++++|+||++. +|.++|.+ +|+++.+. +++|+++.++  ..++  ++..++++    +|||.++.+.
T Consensus       345 ~~~l~~mk~ggilvnvG~~~~eId~~aL~~~aL~~~~I~-~~ldv~~~~~--~~~~l~LL~~grlvnL~~~TPH~a~~~~  421 (494)
T 3ce6_A          345 LEHIKAMKDHAILGNIGHFDNEIDMAGLERSGATRVNVK-PQVDLWTFGD--TGRSIIVLSEGRLLNLGNATGHPSFVMS  421 (494)
T ss_dssp             HHHHHHSCTTCEEEECSSSGGGBCHHHHHHTTCEEEEEE-TTEEEEECTT--TCCEEEEEGGGSCHHHHHSCCSCHHHHH
T ss_pred             HHHHHhcCCCcEEEEeCCCCCccCHHHHHHhhhccceEE-EEEEEeecCC--cchHHHHHhCCCEEeccCCCCCccccch
Confidence            889999999999999999999 99999998 88888887 5678876532  1445  55667887    9999998877


Q ss_pred             HHHHHhhhhHHHHHHHHHHHccCCC
Q 026360          184 DAQVIVHFFPVFMRLFTSFLSHKSN  208 (240)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~g~~~  208 (240)
                      ++.   ..  .+.+++..|.+|+++
T Consensus       422 ~s~---~~--qa~~ai~~~~~g~~~  441 (494)
T 3ce6_A          422 NSF---AN--QTIAQIELWTKNDEY  441 (494)
T ss_dssp             HHH---HH--HHHHHHHHHHTGGGC
T ss_pred             HHH---HH--HHHHHHHHHHcCCCC
Confidence            653   44  677899999998765

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=99.82  E-value=7.2e-22  Score=180.54  Aligned_cols=156  Identities=13%  Similarity=0.189  Sum_probs=120.7

Q ss_pred             ccc-cCCCeEEEEccChHHHHHHHHhcc-CCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCE-EEEcCCCChhhh
Q 026360           31 AYD-LEGKTVGTVGCGRIGKLLLQRLKP-FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDI-VVVNTPLTEKTR  107 (240)
Q Consensus        31 ~~~-l~g~~vgIIG~G~iG~~~A~~l~~-~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDi-Vvl~lp~~~~t~  107 (240)
                      +.+ |+|+++||+|+|+||+.+|+.+++ +|++|++++.+...  .   .+...+ +++++++.+|. .++ +|+ ++|+
T Consensus       206 G~~~l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~g~--~---~~~~gv-dl~~L~~~~d~~~~l-~~l-~~t~  277 (419)
T 1gtm_A          206 GWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGG--I---YNPDGL-NADEVLKWKNEHGSV-KDF-PGAT  277 (419)
T ss_dssp             TCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCE--E---EEEEEE-CHHHHHHHHHHHSSS-TTC-TTSE
T ss_pred             CCcccCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCCCcc--c---cCccCC-CHHHHHHHHHhcCEe-ecC-ccCe
Confidence            456 999999999999999999999999 99999999543211  1   111223 67777765553 222 465 5677


Q ss_pred             hcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCCC-CCCCCCCCeEEcCCC----C---
Q 026360          108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKD-HPWRYMPNQAMTPHV----S---  179 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~-~~l~~~~nv~~TPH~----a---  179 (240)
                      + ++.+.+..||+ .++||++||.+||+++ +++|+.+.|.+++     +||.+++ ++++..+|+++|||+    |   
T Consensus       278 ~-i~~~~l~~mk~-dilIn~ArG~~Vde~a-~~aL~~~~I~~aA-----neP~t~~a~~ll~~~~V~itPhiaaNaGGvt  349 (419)
T 1gtm_A          278 N-ITNEELLELEV-DVLAPAAIEEVITKKN-ADNIKAKIVAEVA-----NGPVTPEADEILFEKGILQIPDFLCNAGGVT  349 (419)
T ss_dssp             E-ECHHHHHHSCC-SEEEECSCSCCBCTTG-GGGCCCSEEECCS-----SSCBCHHHHHHHHHTTCEEECHHHHTTHHHH
T ss_pred             e-eCHHHHHhCCC-CEEEECCCcccCCHHH-HHHhcCCEEEEee-----CCCCCcchHHHHhcCCEEEECchhhhCCcce
Confidence            7 78888889998 5999999999999999 6999999999876     8887654 789999999999999    5   


Q ss_pred             --------------CCcHHHHHHhhhhHHHHHHHHHHHc
Q 026360          180 --------------GTTIDAQVIVHFFPVFMRLFTSFLS  204 (240)
Q Consensus       180 --------------~~t~~~~~~~~~~~~~~~~~~~~~~  204 (240)
                                    +.+.|...++..  .+.+++.++++
T Consensus       350 ~s~~E~~qn~~~~~w~~~ev~~~l~~--~m~~~~~~~~~  386 (419)
T 1gtm_A          350 VSYFEWVQNITGYYWTIEEVRERLDK--KMTKAFYDVYN  386 (419)
T ss_dssp             HHHHHHHHHHHCCCCCHHHHHHHHHH--HHHHHHHHHHH
T ss_pred             eeeehhhhcccccccCHHHHHHHHHH--HHHHHHHHHHH
Confidence                          445666777776  66677777764

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=99.78  E-value=7.7e-19  Score=158.74  Aligned_cols=130  Identities=17%  Similarity=0.242  Sum_probs=107.4

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-cCcee------cCCHHhhcCcCCEEEEcC--CC
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAKF------EEDLDTMLPKCDIVVVNT--PL  102 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-~g~~~------~~~l~ell~~aDiVvl~l--p~  102 (240)
                      .++.|++|+|+|+|.||+.+|+.++++|++|+++|+++...+.+.+ .|...      ..+++++++++|+|+.++  |.
T Consensus       164 ~~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~  243 (377)
T 2vhw_A          164 PGVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPG  243 (377)
T ss_dssp             TTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCC
Confidence            3689999999999999999999999999999999997644444443 45421      235678888999999977  54


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEEcC--CCcccCHHHHHHHHHhCCccEEEeeCCCC-CCCCCCCCCCCCCCeE--EcCC
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVNNA--RGAIMDTQAVVDACSSGHIAGYSGDVWNP-QPAPKDHPWRYMPNQA--MTPH  177 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN~s--rg~~vd~~aL~~aL~~g~i~ga~lDV~~~-EP~~~~~~l~~~~nv~--~TPH  177 (240)
                      + ++..+++++.++.||+|+++||+|  +|+                      ||+. ||.+.++|++..+|++  +|||
T Consensus       244 ~-~t~~li~~~~l~~mk~g~~iV~va~~~Gg----------------------v~e~~ep~~~~~~~~~~~~v~i~~~ph  300 (377)
T 2vhw_A          244 A-KAPKLVSNSLVAHMKPGAVLVDIAIDQGG----------------------CFEGSRPTTYDHPTFAVHDTLFYCVAN  300 (377)
T ss_dssp             S-CCCCCBCHHHHTTSCTTCEEEEGGGGTTC----------------------SBTTCCCBCSSSCEEEETTEEEECBTT
T ss_pred             C-CCcceecHHHHhcCCCCcEEEEEecCCCC----------------------ccccccCCCCCCCEEEECCEEEEecCC
Confidence            4 677888999999999999999999  332                      6777 8988889999999988  9999


Q ss_pred             CCCCcHH
Q 026360          178 VSGTTID  184 (240)
Q Consensus       178 ~a~~t~~  184 (240)
                      +++.+..
T Consensus       301 l~~~~~~  307 (377)
T 2vhw_A          301 MPASVPK  307 (377)
T ss_dssp             GGGGSHH
T ss_pred             cchhhHH
Confidence            9999876

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=99.73  E-value=3.4e-18  Score=156.04  Aligned_cols=105  Identities=21%  Similarity=0.213  Sum_probs=92.0

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcc
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i  110 (240)
                      +.++.||+++|+|+|.||+.+|+.++++|++|+++|+++.....+...|+... ++++++++||+|+++.+    ++++|
T Consensus       242 g~~L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~vv-~LeElL~~ADIVv~atg----t~~lI  316 (464)
T 3n58_A          242 DVMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVV-TLDDAASTADIVVTTTG----NKDVI  316 (464)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEEC-CHHHHGGGCSEEEECCS----SSSSB
T ss_pred             CCcccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCceec-cHHHHHhhCCEEEECCC----Ccccc
Confidence            45799999999999999999999999999999999986543344455677765 89999999999998754    68899


Q ss_pred             cHHHHccCCCCCEEEEcCCCcc-cCHHHHHH
Q 026360          111 DKDRIAKMKKGVLIVNNARGAI-MDTQAVVD  140 (240)
Q Consensus       111 ~~~~l~~mk~gailIN~srg~~-vd~~aL~~  140 (240)
                      +.+.|+.||+|+++||+|||.+ +|.++|.+
T Consensus       317 ~~e~l~~MK~GAILINvGRgdvEID~~aL~~  347 (464)
T 3n58_A          317 TIDHMRKMKDMCIVGNIGHFDNEIQVAALRN  347 (464)
T ss_dssp             CHHHHHHSCTTEEEEECSSSTTTBTCGGGTT
T ss_pred             CHHHHhcCCCCeEEEEcCCCCcccCHHHHHh
Confidence            9999999999999999999998 99999874

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=99.72  E-value=1.6e-17  Score=151.59  Aligned_cols=106  Identities=14%  Similarity=0.241  Sum_probs=93.0

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcc
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i  110 (240)
                      +.++.|++|||+|+|.||+.+|+.|+++|++|+++|+++.....+...|+... ++++++++||+|+++.    .+.+++
T Consensus       206 g~~L~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~~-sL~eal~~ADVVilt~----gt~~iI  280 (436)
T 3h9u_A          206 DVMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVL-LVEDVVEEAHIFVTTT----GNDDII  280 (436)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CHHHHTTTCSEEEECS----SCSCSB
T ss_pred             CCcccCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCeec-CHHHHHhhCCEEEECC----CCcCcc
Confidence            45789999999999999999999999999999999997644444556677655 9999999999999744    478899


Q ss_pred             cHHHHccCCCCCEEEEcCCCcc-cCHHHHHHH
Q 026360          111 DKDRIAKMKKGVLIVNNARGAI-MDTQAVVDA  141 (240)
Q Consensus       111 ~~~~l~~mk~gailIN~srg~~-vd~~aL~~a  141 (240)
                      +.+.++.||+|+++||+|||.+ +|.++|.+.
T Consensus       281 ~~e~l~~MK~gAIVINvgRg~vEID~~~L~~~  312 (436)
T 3h9u_A          281 TSEHFPRMRDDAIVCNIGHFDTEIQVAWLKAN  312 (436)
T ss_dssp             CTTTGGGCCTTEEEEECSSSGGGBCHHHHHHH
T ss_pred             CHHHHhhcCCCcEEEEeCCCCCccCHHHHHhh
Confidence            9999999999999999999997 999999764

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=99.66  E-value=1.5e-16  Score=144.97  Aligned_cols=104  Identities=17%  Similarity=0.300  Sum_probs=89.6

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcc
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i  110 (240)
                      +..+.|++++|+|+|.||+.+|+.|+++|++|+++|+++.....+...|+... +++++++++|+|++|    +.+.+++
T Consensus       215 ~~~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v~-~Leeal~~ADIVi~a----tgt~~lI  289 (435)
T 3gvp_A          215 DMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLV-KLNEVIRQVDIVITC----TGNKNVV  289 (435)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CHHHHTTTCSEEEEC----SSCSCSB
T ss_pred             CceecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEec-cHHHHHhcCCEEEEC----CCCcccC
Confidence            45789999999999999999999999999999999987644444556676654 899999999999995    3578899


Q ss_pred             cHHHHccCCCCCEEEEcCCCcc-cCHHHHH
Q 026360          111 DKDRIAKMKKGVLIVNNARGAI-MDTQAVV  139 (240)
Q Consensus       111 ~~~~l~~mk~gailIN~srg~~-vd~~aL~  139 (240)
                      +.+.|+.||+|+++||+|||.. +|.++|.
T Consensus       290 ~~e~l~~MK~gailINvgrg~~EId~~~L~  319 (435)
T 3gvp_A          290 TREHLDRMKNSCIVCNMGHSNTEIDVASLR  319 (435)
T ss_dssp             CHHHHHHSCTTEEEEECSSTTTTBTGGGGC
T ss_pred             CHHHHHhcCCCcEEEEecCCCccCCHHHHH
Confidence            9999999999999999999988 7776663

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.64  E-value=5.2e-16  Score=135.45  Aligned_cols=97  Identities=15%  Similarity=0.231  Sum_probs=82.9

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec--CCHHhhcCcCCEEEEcCCCChhhhh
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTRG  108 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~--~~l~ell~~aDiVvl~lp~~~~t~~  108 (240)
                      +.++.|+++||||+|.||+.+|+.++++|++|+++|+++.+.+.+.+.|+...  .+++++++++|+|++|+|.     +
T Consensus       150 ~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-----~  224 (293)
T 3d4o_A          150 DFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPA-----L  224 (293)
T ss_dssp             SSCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSS-----C
T ss_pred             CCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCCh-----H
Confidence            45799999999999999999999999999999999997544334445676542  4788999999999999994     6


Q ss_pred             cccHHHHccCCCCCEEEEcCCCcc
Q 026360          109 MFDKDRIAKMKKGVLIVNNARGAI  132 (240)
Q Consensus       109 ~i~~~~l~~mk~gailIN~srg~~  132 (240)
                      +++++.++.||+++++||++||+.
T Consensus       225 ~i~~~~l~~mk~~~~lin~ar~~~  248 (293)
T 3d4o_A          225 VVTANVLAEMPSHTFVIDLASKPG  248 (293)
T ss_dssp             CBCHHHHHHSCTTCEEEECSSTTC
T ss_pred             HhCHHHHHhcCCCCEEEEecCCCC
Confidence            888899999999999999999764

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.63  E-value=7.4e-16  Score=134.88  Aligned_cols=97  Identities=20%  Similarity=0.310  Sum_probs=82.8

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCcee--cCCHHhhcCcCCEEEEcCCCChhhhh
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRG  108 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~--~~~l~ell~~aDiVvl~lp~~~~t~~  108 (240)
                      +.++.|+++||||+|.||+.+|+.++++|++|++||+++...+...+.|+..  ..+++++++++|+|++|+|.     +
T Consensus       152 ~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-----~  226 (300)
T 2rir_A          152 DYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPS-----M  226 (300)
T ss_dssp             SSCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSS-----C
T ss_pred             CCCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCCh-----h
Confidence            5689999999999999999999999999999999999754333334456543  35789999999999999995     6


Q ss_pred             cccHHHHccCCCCCEEEEcCCCcc
Q 026360          109 MFDKDRIAKMKKGVLIVNNARGAI  132 (240)
Q Consensus       109 ~i~~~~l~~mk~gailIN~srg~~  132 (240)
                      +++++.++.||+++++||++||+.
T Consensus       227 ~i~~~~~~~mk~g~~lin~a~g~~  250 (300)
T 2rir_A          227 ILNQTVLSSMTPKTLILDLASRPG  250 (300)
T ss_dssp             CBCHHHHTTSCTTCEEEECSSTTC
T ss_pred             hhCHHHHHhCCCCCEEEEEeCCCC
Confidence            788889999999999999999854

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.63  E-value=5e-16  Score=136.30  Aligned_cols=116  Identities=18%  Similarity=0.236  Sum_probs=103.2

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccH--HH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK--DR  114 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~--~~  114 (240)
                      ++||+||+|.||..+|++|.+.|++|++||+++.+.+.+.+.|+....++.|+++.||+|++|+|..+..+.++..  ..
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~   83 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL   83 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSSS
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhhh
Confidence            5899999999999999999999999999999876667777789998999999999999999999998888777632  36


Q ss_pred             HccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeC
Q 026360          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV  154 (240)
Q Consensus       115 l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV  154 (240)
                      ++.+++|.++||+++..+-+...+.+.+++..+.  .+|.
T Consensus        84 ~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~--~lDa  121 (300)
T 3obb_A           84 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLA--MLDA  121 (300)
T ss_dssp             TTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCE--EEEC
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE--EEec
Confidence            7889999999999999999999999999999887  4553

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.62  E-value=1e-15  Score=134.01  Aligned_cols=119  Identities=13%  Similarity=0.129  Sum_probs=100.7

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA  116 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~  116 (240)
                      +||||||+|.||..+|++|...|++|++||+++.+.+.+.+.|+...+++.|+++++|+|++++|..+....++..+.+.
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~   85 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSMELVE   85 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHHH
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHHh
Confidence            58999999999999999999999999999998877777777888888999999999999999999888888888778899


Q ss_pred             cCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCC
Q 026360          117 KMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (240)
Q Consensus       117 ~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~  155 (240)
                      .++++.++||++...+-+...+.+.+.+..+.....-|.
T Consensus        86 ~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVs  124 (297)
T 4gbj_A           86 KLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAPIF  124 (297)
T ss_dssp             HHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEE
T ss_pred             hcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecCCcC
Confidence            999999999999999999999999999998874433333

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=99.61  E-value=3.9e-16  Score=140.53  Aligned_cols=156  Identities=17%  Similarity=0.217  Sum_probs=102.7

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-cCcee------cCCHHhhcCcCCEEEEcCCCCh
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAKF------EEDLDTMLPKCDIVVVNTPLTE  104 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-~g~~~------~~~l~ell~~aDiVvl~lp~~~  104 (240)
                      .++.+++|+|+|.|.||+.+++.++++|++|+++|+++...+.+.+ .|...      ..+++++++++|+|+.+++...
T Consensus       162 ~~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~  241 (369)
T 2eez_A          162 PGVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPG  241 (369)
T ss_dssp             TBBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC---
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCc
Confidence            3689999999999999999999999999999999987544333333 44321      2356678889999999998665


Q ss_pred             -hhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCCCCCCCeE---------E
Q 026360          105 -KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQA---------M  174 (240)
Q Consensus       105 -~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nv~---------~  174 (240)
                       .+..++.++.++.||+++++||++-.             .|   |+ +||+  ||.+.++|++..+++.         .
T Consensus       242 ~~~~~li~~~~l~~mk~gg~iV~v~~~-------------~g---g~-~d~~--ep~~~~~~~~~~~~v~~~~v~~lp~~  302 (369)
T 2eez_A          242 AKAPKLVTRDMLSLMKEGAVIVDVAVD-------------QG---GC-VETI--RPTTHAEPTYVVDGVVHYGVANMPGA  302 (369)
T ss_dssp             ----CCSCHHHHTTSCTTCEEEECC--------------------------------------CEETTEEEECCSCSGGG
T ss_pred             cccchhHHHHHHHhhcCCCEEEEEecC-------------CC---CC-CCcc--cCCCCCCCEEEECCEEEEeeCCcchh
Confidence             56778889999999999999999822             12   33 8987  7777788899999998         8


Q ss_pred             cCCCCCC--cHHHHHHhhhhHHHHHHHHHHHccCCC
Q 026360          175 TPHVSGT--TIDAQVIVHFFPVFMRLFTSFLSHKSN  208 (240)
Q Consensus       175 TPH~a~~--t~~~~~~~~~~~~~~~~~~~~~~g~~~  208 (240)
                      |||.++.  +.+....+..  .+.++++.+..++.+
T Consensus       303 ~p~~as~~~~~~~~~~l~~--l~~~g~~~~~~~~~l  336 (369)
T 2eez_A          303 VPRTSTFALTNQTLPYVLK--LAEKGLDALLEDAAL  336 (369)
T ss_dssp             SHHHHHHHHHHHHHHHHHH--HHHHTTHHHHSCHHH
T ss_pred             cHHHHHHHHHHHHHHHHHH--HHhcChhhhhcChHH
Confidence            8998775  3455555555  555666667666543

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.57  E-value=1.1e-14  Score=128.18  Aligned_cols=143  Identities=13%  Similarity=0.118  Sum_probs=97.4

Q ss_pred             HHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCC--CChhHHHhcCceecCCHHhhc
Q 026360           14 HHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK--MDPQLEKETGAKFEEDLDTML   90 (240)
Q Consensus        14 ~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~--~~~~~~~~~g~~~~~~l~ell   90 (240)
                      ++..+.+.|..............++|||||+|.||..+|+.|...|+ +|++||+++  ...+...+.|+....++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~   81 (312)
T 3qsg_A            2 HHHHHHSSGVDLGTENLYFQSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVA   81 (312)
T ss_dssp             -----------------------CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHH
T ss_pred             CcccccccccccCcccccccCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHH
Confidence            45567777754322112233456899999999999999999999999 999999963  344555667888888999999


Q ss_pred             CcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhC--CccEEEeeCCCCC
Q 026360           91 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG--HIAGYSGDVWNPQ  158 (240)
Q Consensus        91 ~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g--~i~ga~lDV~~~E  158 (240)
                      ++||+|++++|....... + .+....++++.++||+++.......++.+.+.+.  .+.....-|+..+
T Consensus        82 ~~aDvVi~~vp~~~~~~~-~-~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~pv~g~~  149 (312)
T 3qsg_A           82 GECDVIFSLVTAQAALEV-A-QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAVMSAV  149 (312)
T ss_dssp             HHCSEEEECSCTTTHHHH-H-HHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEEEECSCS
T ss_pred             hcCCEEEEecCchhHHHH-H-HhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEeccccCCc
Confidence            999999999997655442 2 5677889999999999999999999999999876  4443333345433

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.56  E-value=3.5e-15  Score=130.90  Aligned_cols=117  Identities=15%  Similarity=0.092  Sum_probs=99.8

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccH
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~  112 (240)
                      ++..++|||||+|.||..+|+.|...|++|++||+++...+.+.+.|+....+++++++++|+|++++|....++.++..
T Consensus         6 ~~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~   85 (306)
T 3l6d_A            6 ESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLGM   85 (306)
T ss_dssp             CCCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHTS
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhcc
Confidence            45678999999999999999999999999999999865555556668887889999999999999999977667777643


Q ss_pred             HHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccE
Q 026360          113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAG  149 (240)
Q Consensus       113 ~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~g  149 (240)
                      +.+..+++|.++||++++.+.+..++.+.+++..+..
T Consensus        86 ~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~  122 (306)
T 3l6d_A           86 PGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGHY  122 (306)
T ss_dssp             TTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCEE
T ss_pred             cchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCeE
Confidence            2345678999999999999999999999998877764

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.56  E-value=4.8e-14  Score=124.29  Aligned_cols=164  Identities=12%  Similarity=0.039  Sum_probs=108.0

Q ss_pred             HHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCChhHHHhcCc--eecCCHHh-hcC
Q 026360           17 VISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGA--KFEEDLDT-MLP   91 (240)
Q Consensus        17 ~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~g~--~~~~~l~e-ll~   91 (240)
                      +-.+.|....... ..++..++|||||+|.||.++|+.|+..|+  +|++||+++...+.+.+.|+  ....++++ +++
T Consensus        15 ~~~~~~~~~~~~~-~~~~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~   93 (314)
T 3ggo_A           15 VPRGSHMKNIIKI-LKSLSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDF   93 (314)
T ss_dssp             ---------------CCCSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGG
T ss_pred             cccccCcCcCCch-hhhcCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhc
Confidence            3445664433221 223456899999999999999999999999  99999997655556666776  34568888 899


Q ss_pred             cCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCC---CCCCCCCCCC
Q 026360           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ---PAPKDHPWRY  168 (240)
Q Consensus        92 ~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~E---P~~~~~~l~~  168 (240)
                      +||+|++|+|... +..++ ++....+++++++++++.......+++.+.+.. ++.+ +--++..|   |......|+.
T Consensus        94 ~aDvVilavp~~~-~~~vl-~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~-~~v~-~hPm~G~e~sG~~~A~~~Lf~  169 (314)
T 3ggo_A           94 SPDFVMLSSPVRT-FREIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGK-RFVG-GHPIAGTEKSGVEYSLDNLYE  169 (314)
T ss_dssp             CCSEEEECSCGGG-HHHHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG-GEEC-EEECCCCCCCSGGGCCTTTTT
T ss_pred             cCCEEEEeCCHHH-HHHHH-HHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC-CEEe-cCcccCCcccchhhhhhhhhc
Confidence            9999999999543 33443 566777999999999988765556677777654 2221 12333333   3334456777


Q ss_pred             CCCeEEcCCCCCCcHHHH
Q 026360          169 MPNQAMTPHVSGTTIDAQ  186 (240)
Q Consensus       169 ~~nv~~TPH~a~~t~~~~  186 (240)
                      ...+++||+-+ .+.+..
T Consensus       170 g~~~il~~~~~-~~~~~~  186 (314)
T 3ggo_A          170 GKKVILTPTKK-TDKKRL  186 (314)
T ss_dssp             TCEEEECCCTT-SCHHHH
T ss_pred             CCEEEEEeCCC-CCHHHH
Confidence            78899999844 344443

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.56  E-value=3.5e-15  Score=131.67  Aligned_cols=118  Identities=19%  Similarity=0.165  Sum_probs=100.1

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccH
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~  112 (240)
                      ....++|||||+|.||..+|+.|...|++|++||+++...+...+.|+....+++++++++|+|++++|.....+.++..
T Consensus        28 ~~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~  107 (320)
T 4dll_A           28 DPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFA  107 (320)
T ss_dssp             -CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTT
T ss_pred             ccCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcc
Confidence            34678999999999999999999999999999999865555556668887789999999999999999976666666532


Q ss_pred             -HHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEE
Q 026360          113 -DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY  150 (240)
Q Consensus       113 -~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga  150 (240)
                       +.+..++++.++||++++.+.+.+.+.+.+.+..+...
T Consensus       108 ~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~  146 (320)
T 4dll_A          108 QGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHL  146 (320)
T ss_dssp             TCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             hhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEE
Confidence             56677999999999999999999999999998777643

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.56  E-value=1.2e-14  Score=126.85  Aligned_cols=113  Identities=13%  Similarity=0.170  Sum_probs=100.0

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHH
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  115 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l  115 (240)
                      .++|||||+|.||..+|+.|...|++|++||+++...+.+.+.|+....+++++++ +|+|++++|..+.++.++ .+..
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~-~~l~   92 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVV-GELA   92 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHH-HHHH
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHH-HHHH
Confidence            46899999999999999999999999999999887777777778888889999999 999999999766777666 5778


Q ss_pred             ccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEE
Q 026360          116 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY  150 (240)
Q Consensus       116 ~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga  150 (240)
                      ..++++.++||+++..+.+.+.+.+.+.+..+...
T Consensus        93 ~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~  127 (296)
T 3qha_A           93 GHAKPGTVIAIHSTISDTTAVELARDLKARDIHIV  127 (296)
T ss_dssp             TTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEE
T ss_pred             HhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEE
Confidence            88999999999999999999999999988766533

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.55  E-value=8.8e-15  Score=128.51  Aligned_cols=118  Identities=14%  Similarity=0.085  Sum_probs=100.9

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcc-
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF-  110 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i-  110 (240)
                      .....++|||||+|.||..+|+.|...|++|++||+++...+.+.+.|+....+++++++++|+|++++|....++.++ 
T Consensus        17 ~~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~   96 (310)
T 3doj_A           17 RGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVVF   96 (310)
T ss_dssp             -CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHH
T ss_pred             ccccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHh
Confidence            3456689999999999999999999999999999998766666777788888899999999999999999766666665 


Q ss_pred             -cHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccE
Q 026360          111 -DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAG  149 (240)
Q Consensus       111 -~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~g  149 (240)
                       ..+.+..++++.++||+++..+...+.+.+.+.+..+..
T Consensus        97 ~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~  136 (310)
T 3doj_A           97 DKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRF  136 (310)
T ss_dssp             STTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred             CchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEE
Confidence             245667899999999999999999999999998876653

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.53  E-value=1.4e-14  Score=125.57  Aligned_cols=113  Identities=12%  Similarity=0.112  Sum_probs=98.8

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc--HHH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR  114 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~--~~~  114 (240)
                      ++|||||+|.||..+|+.|...|++|++||+++...+...+.|+....+++++++++|+|++|+|.....+.++.  .+.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l   81 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGV   81 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchH
Confidence            689999999999999999999999999999987666667777888888999999999999999997666666662  466


Q ss_pred             HccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccE
Q 026360          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAG  149 (240)
Q Consensus       115 l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~g  149 (240)
                      ...++++.++||+++..+.+...+.+.+.+..+..
T Consensus        82 ~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~  116 (287)
T 3pef_A           82 LEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRF  116 (287)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred             hhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEE
Confidence            77899999999999999999999999998876653

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.52  E-value=2.4e-14  Score=128.47  Aligned_cols=121  Identities=14%  Similarity=0.183  Sum_probs=102.9

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcC---CEEEEcCCCChhhhhcc
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKC---DIVVVNTPLTEKTRGMF  110 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~a---DiVvl~lp~~~~t~~~i  110 (240)
                      +.+++|||||+|.||..+|+.|...|++|.+||+++...+.+.+.|+....+++++++.+   |+|++++|.. .+..++
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v~~vl   98 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA-VVDSML   98 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG-GHHHHH
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH-HHHHHH
Confidence            567899999999999999999999999999999986555556666877778999999999   9999999966 666665


Q ss_pred             cHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCC
Q 026360          111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (240)
Q Consensus       111 ~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~  156 (240)
                       .+.+..++++.+|||++++...+...+.+.+.+..+......|+.
T Consensus        99 -~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsG  143 (358)
T 4e21_A           99 -QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSG  143 (358)
T ss_dssp             -HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEEC
T ss_pred             -HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCC
Confidence             467788999999999999999999999999999888766555554

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.51  E-value=1.3e-13  Score=118.78  Aligned_cols=141  Identities=10%  Similarity=0.042  Sum_probs=104.0

Q ss_pred             CeEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCChhHHHhcCce--ecCCHHhhcC-cCCEEEEcCCCChhhhhccc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGAK--FEEDLDTMLP-KCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~g~~--~~~~l~ell~-~aDiVvl~lp~~~~t~~~i~  111 (240)
                      ++|||||+|.||..+|+.|+..|+  +|++||+++...+.+.+.|+.  ...+++++++ ++|+|++++|.. .+..++.
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~-~~~~v~~   80 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFREIAK   80 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHH-HHHHHHH
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHH-HHHHHHH
Confidence            589999999999999999999998  999999976544555556763  3457888898 999999999943 3444443


Q ss_pred             HHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCC---CCCCCCCCCCCCCeEEcCCCCCC
Q 026360          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ---PAPKDHPWRYMPNQAMTPHVSGT  181 (240)
Q Consensus       112 ~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~E---P~~~~~~l~~~~nv~~TPH~a~~  181 (240)
                       +....+++++++++++++.....+.+.+.+.++-+.  ...++..|   |....++++...+++++||.++.
T Consensus        81 -~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~~v~--~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~  150 (281)
T 2g5c_A           81 -KLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVG--GHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTD  150 (281)
T ss_dssp             -HHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEEC--EEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSC
T ss_pred             -HHHhhCCCCcEEEECCCCcHHHHHHHHHhcccccee--eccccCCccCChhhhhhHHhCCCCEEEecCCCCC
Confidence             456678999999999988876677888888764111  12233332   33445567777789999997654

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.50  E-value=1.5e-14  Score=125.48  Aligned_cols=112  Identities=14%  Similarity=0.110  Sum_probs=97.1

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc--HHH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR  114 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~--~~~  114 (240)
                      ++|||||+|.||..+|+.|...|++|++||+++...+...+.|+....+++++++++|+|++++|..+.++.++.  .+.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l   81 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGV   81 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhh
Confidence            579999999999999999999999999999987666666667888888999999999999999997666666652  356


Q ss_pred             HccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       115 l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      +..++++.++||++++...+.+.+.+.+.+..+.
T Consensus        82 ~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~  115 (287)
T 3pdu_A           82 LEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGR  115 (287)
T ss_dssp             GGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             hhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            6778999999999999999999999999887665

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.49  E-value=2e-14  Score=125.74  Aligned_cols=114  Identities=16%  Similarity=0.063  Sum_probs=95.9

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCcee-cCCHHhhcCcCCEEEEcCCCChhhhhccc--
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-EEDLDTMLPKCDIVVVNTPLTEKTRGMFD--  111 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-~~~l~ell~~aDiVvl~lp~~~~t~~~i~--  111 (240)
                      ..++|||||+|.||..+|+.|...|++|++||+++...+...+.|... ..++++++++||+|++++|.....+.++.  
T Consensus         6 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~   85 (303)
T 3g0o_A            6 TDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGE   85 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhCh
Confidence            347899999999999999999999999999999865555566667765 67899999999999999997666666652  


Q ss_pred             HHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       112 ~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      .+....++++.++||+++....+.+.+.+.+.+..+.
T Consensus        86 ~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~  122 (303)
T 3g0o_A           86 DGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLN  122 (303)
T ss_dssp             CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCE
T ss_pred             hhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCe
Confidence            4556778999999999999999999999999887665

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=99.47  E-value=4.8e-14  Score=128.36  Aligned_cols=142  Identities=18%  Similarity=0.239  Sum_probs=106.4

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCCh-hHHHhcCceec--CCHHhhcCcCCEEEEcCCCChhhhh
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-QLEKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTRG  108 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~~g~~~~--~~l~ell~~aDiVvl~lp~~~~t~~  108 (240)
                      ++.|++|+|+|+|.||+.+++.++.+|+ +|+++|+++.+. +.+..+|....  .++++++.++|+|+.|+|.+   ..
T Consensus       164 ~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~~---~~  240 (404)
T 1gpj_A          164 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAP---HP  240 (404)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSS---SC
T ss_pred             cccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCCC---Cc
Confidence            4789999999999999999999999999 899999975443 34555676532  46778888999999998743   45


Q ss_pred             cccHHHHcc--C----CCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCCCCCCCeEE--cCCCCC
Q 026360          109 MFDKDRIAK--M----KKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAM--TPHVSG  180 (240)
Q Consensus       109 ~i~~~~l~~--m----k~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nv~~--TPH~a~  180 (240)
                      +++.+.++.  |    +++.++||++                             +|.+.+++++.+||+++  +||+++
T Consensus       241 ~~~~~~l~~~~lk~r~~~~~v~vdia-----------------------------~P~~i~~~l~~l~~v~l~d~d~l~~  291 (404)
T 1gpj_A          241 VIHVDDVREALRKRDRRSPILIIDIA-----------------------------NPRDVEEGVENIEDVEVRTIDDLRV  291 (404)
T ss_dssp             CBCHHHHHHHHHHCSSCCCEEEEECC-----------------------------SSCSBCTTGGGSTTEEEEEHHHHHH
T ss_pred             eecHHHHHHHHHhccCCCCEEEEEcc-----------------------------CCCCCCccccccCCeEEEeHhhHHH
Confidence            566666665  3    2455666664                             36556778999999999  999999


Q ss_pred             CcHHHHH----------HhhhhHHHHHHHHHHHccCCC
Q 026360          181 TTIDAQV----------IVHFFPVFMRLFTSFLSHKSN  208 (240)
Q Consensus       181 ~t~~~~~----------~~~~~~~~~~~~~~~~~g~~~  208 (240)
                      .+.++..          .+..  ...+++..|+.+.+.
T Consensus       292 ~~~~~~~~r~~~~~~~~~li~--q~~~~f~~w~~~~~~  327 (404)
T 1gpj_A          292 IARENLERRRKEIPKVEKLIE--EELSTVEEELEKLKE  327 (404)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhccc
Confidence            8887643          3333  455677788877543

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.46  E-value=1.6e-13  Score=121.10  Aligned_cols=118  Identities=14%  Similarity=0.050  Sum_probs=94.2

Q ss_pred             CCeEEEEccChHHHHHHHHhccCC-CEEEEEcCCCC-------ChhHHHhcCceecC-CHHhhcCcCCEEEEcCCCChhh
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKM-------DPQLEKETGAKFEE-DLDTMLPKCDIVVVNTPLTEKT  106 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G-~~V~~~d~~~~-------~~~~~~~~g~~~~~-~l~ell~~aDiVvl~lp~~~~t  106 (240)
                      .++|||||+|.||..+|+.|...| ++|++||+++.       ..+...+.|+  .. ++++++++||+|++++|.....
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~--~~~s~~e~~~~aDvVi~avp~~~~~  101 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV--EPLDDVAGIACADVVLSLVVGAATK  101 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC--EEESSGGGGGGCSEEEECCCGGGHH
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC--CCCCHHHHHhcCCEEEEecCCHHHH
Confidence            478999999999999999999999 99999998752       1222334566  55 7889999999999999966555


Q ss_pred             hhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCC
Q 026360          107 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP  157 (240)
Q Consensus       107 ~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~  157 (240)
                      ..+  .+....++++.++||+++..+.+.+.+.+.+.+..+......|+.+
T Consensus       102 ~~~--~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~  150 (317)
T 4ezb_A          102 AVA--ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMAR  150 (317)
T ss_dssp             HHH--HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSC
T ss_pred             HHH--HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCC
Confidence            443  5677889999999999999999999999999887665433345553

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.45  E-value=2.6e-13  Score=117.43  Aligned_cols=144  Identities=15%  Similarity=0.139  Sum_probs=101.9

Q ss_pred             CCeEEEEccChHHHHHHHHhccC--CCEEEEEcCCCCChhHHHhcCc--eecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPF--NCNLLYHDRVKMDPQLEKETGA--KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~--G~~V~~~d~~~~~~~~~~~~g~--~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~  111 (240)
                      -++|||||+|.||..+|..|...  |++|++||+++...+...+.|.  ....+++++++++|+|++++|... ...++ 
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~~-~~~v~-   83 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIKK-TIDFI-   83 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHHH-HHHHH-
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHHH-HHHHH-
Confidence            46899999999999999999866  6899999987544444555565  344578888999999999999432 34444 


Q ss_pred             HHHHcc-CCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEE-eeCCCC---CCCCCCCCCCCCCCeEEcCCCCCC
Q 026360          112 KDRIAK-MKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS-GDVWNP---QPAPKDHPWRYMPNQAMTPHVSGT  181 (240)
Q Consensus       112 ~~~l~~-mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~-lDV~~~---EP~~~~~~l~~~~nv~~TPH~a~~  181 (240)
                      .+.... ++++.+++++++......+.+.+.+.+..+.... .-++..   .|......++..+.++++||.++.
T Consensus        84 ~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~~~  158 (290)
T 3b1f_A           84 KILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCLTK  158 (290)
T ss_dssp             HHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----CCTTSCCTTTTTTSEEEEEECTTCC
T ss_pred             HHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCCCC
Confidence            345666 8999999999988776668888888752333211 112211   344445567777789999987654

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.45  E-value=9.7e-13  Score=114.00  Aligned_cols=139  Identities=12%  Similarity=0.078  Sum_probs=102.3

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc-------------------------CceecCCHHhhcC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-------------------------GAKFEEDLDTMLP   91 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~-------------------------g~~~~~~l~ell~   91 (240)
                      ++|+|||.|.||..+|+.+...|++|++||+++...+...+.                         .+....++++.++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~   84 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAVK   84 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHhc
Confidence            689999999999999999999999999999976433322221                         1345578889999


Q ss_pred             cCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCCCCCCC
Q 026360           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN  171 (240)
Q Consensus        92 ~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~n  171 (240)
                      +||+|+.++|.+.+.+..+..+..+.+++++++++.+.+  +...++.+++... -...++..+.        |.+..+.
T Consensus        85 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~--~~~~~la~~~~~~-~~~ig~h~~~--------p~~~~~l  153 (283)
T 4e12_A           85 DADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSST--LLPSDLVGYTGRG-DKFLALHFAN--------HVWVNNT  153 (283)
T ss_dssp             TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHHHHSCG-GGEEEEEECS--------STTTSCE
T ss_pred             cCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCCC-cceEEEccCC--------CcccCce
Confidence            999999999987767777767788889999999965544  3567788877543 3445666442        3456677


Q ss_pred             eEEcCCCCCCcHHHHH
Q 026360          172 QAMTPHVSGTTIDAQV  187 (240)
Q Consensus       172 v~~TPH~a~~t~~~~~  187 (240)
                      +.++||- ..+.+..+
T Consensus       154 vevv~~~-~t~~~~~~  168 (283)
T 4e12_A          154 AEVMGTT-KTDPEVYQ  168 (283)
T ss_dssp             EEEEECT-TSCHHHHH
T ss_pred             EEEEeCC-CCCHHHHH
Confidence            8899984 33444433

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=99.39  E-value=1e-12  Score=117.52  Aligned_cols=108  Identities=21%  Similarity=0.259  Sum_probs=91.4

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcC-cCCEEEEcCCCChhhhhccc
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP-KCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~-~aDiVvl~lp~~~~t~~~i~  111 (240)
                      +|.||+++|+|+|+||+.+|+.++++|++|+++|+++...+.....+++.+ +.++++. +||+++.|     ++.+.|+
T Consensus       172 ~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v-~~~ell~~~~DIliP~-----A~~~~I~  245 (355)
T 1c1d_A          172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPC-----AMGGVIT  245 (355)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEEC-----SCSCCBC
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEe-ChHHhhcCccceecHh-----HHHhhcC
Confidence            689999999999999999999999999999999986432334455677766 7788887 89999854     4678999


Q ss_pred             HHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       112 ~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      .+.++.|| ..+|+|.+++++.++++ .++|+++++.
T Consensus       246 ~~~~~~lk-~~iVie~AN~p~t~~eA-~~~L~~~gIl  280 (355)
T 1c1d_A          246 TEVARTLD-CSVVAGAANNVIADEAA-SDILHARGIL  280 (355)
T ss_dssp             HHHHHHCC-CSEECCSCTTCBCSHHH-HHHHHHTTCE
T ss_pred             HHHHhhCC-CCEEEECCCCCCCCHHH-HHHHHhCCEE
Confidence            99999998 68999999999999777 5899988776

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.39  E-value=7e-13  Score=123.16  Aligned_cols=121  Identities=12%  Similarity=0.128  Sum_probs=99.4

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc---C--ceecCCHHhhcC---cCCEEEEcCCCChhhh
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET---G--AKFEEDLDTMLP---KCDIVVVNTPLTEKTR  107 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~---g--~~~~~~l~ell~---~aDiVvl~lp~~~~t~  107 (240)
                      .++|||||+|.||..+|+.|...|++|.+||+++...+.+.+.   +  +....+++++++   ++|+|++++|..+.++
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~   83 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVD   83 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHHH
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHHH
Confidence            4689999999999999999999999999999987555544433   2  233568888876   5999999999877777


Q ss_pred             hcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCC
Q 026360          108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP  157 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~  157 (240)
                      .++ .+....+++|.++||++++...+...+.+.+.+..+......|...
T Consensus        84 ~vl-~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg  132 (484)
T 4gwg_A           84 DFI-EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGG  132 (484)
T ss_dssp             HHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESH
T ss_pred             HHH-HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCC
Confidence            776 5778889999999999999999999999999998887665555543

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=99.38  E-value=3.9e-13  Score=119.82  Aligned_cols=139  Identities=14%  Similarity=0.089  Sum_probs=97.4

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCc----CCEEEEcCCCChhhhhccc
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK----CDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~----aDiVvl~lp~~~~t~~~i~  111 (240)
                      -++|||||+|.||.++|+.|+..|++|++||+++...+.+.+.|+....++++++++    +|+|++++|. ..+..++ 
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~-~~~~~vl-   85 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPM-TAIDSLL-   85 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCH-HHHHHHH-
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCH-HHHHHHH-
Confidence            468999999999999999999999999999998655566677788766788888765    6999999994 3455555 


Q ss_pred             HHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEE-eeCCCCC---CCCCCCCCCCCCCeEEcCCCC
Q 026360          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS-GDVWNPQ---PAPKDHPWRYMPNQAMTPHVS  179 (240)
Q Consensus       112 ~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~-lDV~~~E---P~~~~~~l~~~~nv~~TPH~a  179 (240)
                      .+. ..++++++++|++..+....+++.+.+.  .....+ --++..|   |......|+.-..+++||+-.
T Consensus        86 ~~l-~~~~~~~iv~Dv~Svk~~i~~~~~~~~~--~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~  154 (341)
T 3ktd_A           86 DAV-HTHAPNNGFTDVVSVKTAVYDAVKARNM--QHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQL  154 (341)
T ss_dssp             HHH-HHHCTTCCEEECCSCSHHHHHHHHHTTC--GGGEECEEECCSCC-CCGGGCCSSTTTTCEEEECCGGG
T ss_pred             HHH-HccCCCCEEEEcCCCChHHHHHHHHhCC--CCcEecCCccccccccchhhhhhHHhcCCeEEEEeCCC
Confidence            233 3358999999998765433344444332  123222 2333332   223445677777899999754

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=99.38  E-value=3.6e-13  Score=116.83  Aligned_cols=112  Identities=19%  Similarity=0.283  Sum_probs=92.8

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc--HHH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR  114 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~--~~~  114 (240)
                      ++|+|||+|.||..++..|...|++|.+||+++...+...+.|+....+++++++++|+|++++|.....+.++.  .+.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l   85 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   85 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchH
Confidence            589999999999999999999999999999976544555556777777899999999999999996666666652  345


Q ss_pred             HccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       115 l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      ...++++.++|+++.|...+.+.+.+.+.+..+.
T Consensus        86 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~  119 (299)
T 1vpd_A           86 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVE  119 (299)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            5678999999999999887888999999875544

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=99.38  E-value=9.2e-13  Score=119.84  Aligned_cols=101  Identities=20%  Similarity=0.271  Sum_probs=83.5

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecC---------------------------C
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE---------------------------D   85 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~---------------------------~   85 (240)
                      ++.|++|+|+|.|.+|..+++.++++|++|+++|+++...+.+.++|...+.                           +
T Consensus       169 ~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  248 (401)
T 1x13_A          169 KVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMEL  248 (401)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHH
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHH
Confidence            5789999999999999999999999999999999987665666667765442                           3


Q ss_pred             HHhhcCcCCEEEEc--CCCChhhhhcccHHHHccCCCCCEEEEcC--CCcccC
Q 026360           86 LDTMLPKCDIVVVN--TPLTEKTRGMFDKDRIAKMKKGVLIVNNA--RGAIMD  134 (240)
Q Consensus        86 l~ell~~aDiVvl~--lp~~~~t~~~i~~~~l~~mk~gailIN~s--rg~~vd  134 (240)
                      +++++..+|+|+.+  +|.. .+..+++++.++.||+|++|||+|  ||+.++
T Consensus       249 l~e~~~~aDvVI~~~~~pg~-~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~  300 (401)
T 1x13_A          249 FAAQAKEVDIIVTTALIPGK-PAPKLITREMVDSMKAGSVIVDLAAQNGGNCE  300 (401)
T ss_dssp             HHHHHHHCSEEEECCCCTTS-CCCCCBCHHHHHTSCTTCEEEETTGGGTCSBT
T ss_pred             HHHHhCCCCEEEECCccCCC-CCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcC
Confidence            67788899999999  4432 355778889999999999999999  777554

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.37  E-value=1.6e-12  Score=120.82  Aligned_cols=117  Identities=11%  Similarity=0.097  Sum_probs=95.5

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc----CceecCCHHhhcCc---CCEEEEcCCCChh
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----GAKFEEDLDTMLPK---CDIVVVNTPLTEK  105 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~----g~~~~~~l~ell~~---aDiVvl~lp~~~~  105 (240)
                      ..+.++|||||+|.||..+|..|...|++|.+||+++...+...+.    |+....+++++++.   +|+|++++|....
T Consensus        12 ~~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~   91 (480)
T 2zyd_A           12 HMSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAG   91 (480)
T ss_dssp             ---CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSH
T ss_pred             ccCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHH
Confidence            3567899999999999999999999999999999976444444333    67777789998876   9999999997777


Q ss_pred             hhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEE
Q 026360          106 TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY  150 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga  150 (240)
                      ++.++ .+....+++|.+|||++.|...+...+.+.+.+..+...
T Consensus        92 v~~vl-~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v  135 (480)
T 2zyd_A           92 TDAAI-DSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFI  135 (480)
T ss_dssp             HHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCee
Confidence            77777 467778999999999999998888889999988666543

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=99.34  E-value=1.5e-12  Score=113.07  Aligned_cols=113  Identities=17%  Similarity=0.223  Sum_probs=92.5

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc--HH
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KD  113 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~--~~  113 (240)
                      .++|+|||+|.||..+|..|...|++|++||+++...+...+.|+....+++++++++|+|++++|....++.++.  .+
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~   83 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGG   83 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcch
Confidence            3689999999999999999999999999999875444444445777777899999999999999997666666664  25


Q ss_pred             HHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360          114 RIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       114 ~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      ....++++.++|++++|...+.+.+.+.+.+..+.
T Consensus        84 l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~  118 (301)
T 3cky_A           84 VLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGID  118 (301)
T ss_dssp             HHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCE
T ss_pred             HhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            56678999999999999877888899988875444

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=99.34  E-value=2.8e-12  Score=115.47  Aligned_cols=95  Identities=19%  Similarity=0.255  Sum_probs=80.4

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecC-------------------------CHH
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE-------------------------DLD   87 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~-------------------------~l~   87 (240)
                      .+.+++|+|+|+|.+|..+|+.++++|++|+++|+++...+.+.+.|.+...                         +++
T Consensus       181 ~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~  260 (381)
T 3p2y_A          181 TVKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALE  260 (381)
T ss_dssp             EECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHH
T ss_pred             CcCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHH
Confidence            4689999999999999999999999999999999987666667777765432                         467


Q ss_pred             hhcCcCCEEEEcC--CCChhhhhcccHHHHccCCCCCEEEEcC
Q 026360           88 TMLPKCDIVVVNT--PLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus        88 ell~~aDiVvl~l--p~~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      +.++++|+|+.++  |. ..+..+++++.++.||||++|||+|
T Consensus       261 e~l~~aDIVI~tv~iPg-~~ap~Lvt~emv~~MkpGsVIVDvA  302 (381)
T 3p2y_A          261 DAITKFDIVITTALVPG-RPAPRLVTAAAATGMQPGSVVVDLA  302 (381)
T ss_dssp             HHHTTCSEEEECCCCTT-SCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred             HHHhcCCEEEECCCCCC-cccceeecHHHHhcCCCCcEEEEEe
Confidence            8899999999875  43 2345688999999999999999998

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=99.34  E-value=1.4e-11  Score=105.80  Aligned_cols=138  Identities=16%  Similarity=0.150  Sum_probs=95.6

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCce--ecCCHHhhcCcCCEEEEcCCCChhhhhcccHHH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK--FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~--~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~  114 (240)
                      ++|+|||+|.||..+|+.|...|++|++||+++...+...+.|..  ...+++++ +++|+|++++|. ..+..++ .+.
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~-~~~~~~~-~~l   77 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPI-QLILPTL-EKL   77 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCH-HHHHHHH-HHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCH-HHHHHHH-HHH
Confidence            479999999999999999999999999999876444445555652  34578888 999999999993 3344444 356


Q ss_pred             HccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCC---CCCCCCCCCCCCCCeEEcCCCCC
Q 026360          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP---QPAPKDHPWRYMPNQAMTPHVSG  180 (240)
Q Consensus       115 l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~---EP~~~~~~l~~~~nv~~TPH~a~  180 (240)
                      ...+++++++|+++.......+.+.+.+.  ++.+ ...++..   .|....+.++..+.++++|+-++
T Consensus        78 ~~~~~~~~~vv~~~~~~~~~~~~~~~~~~--~~~~-~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~  143 (279)
T 2f1k_A           78 IPHLSPTAIVTDVASVKTAIAEPASQLWS--GFIG-GHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYT  143 (279)
T ss_dssp             GGGSCTTCEEEECCSCCHHHHHHHHHHST--TCEE-EEECCCCSCSSGGGCCTTTTTTCEEEEEECTTC
T ss_pred             HhhCCCCCEEEECCCCcHHHHHHHHHHhC--CEee-cCcccCCccCCHHHHhHHHhCCCcEEEecCCCC
Confidence            66789999999997766655555555443  2322 1233321   23333445566667889997543

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=99.34  E-value=1.6e-12  Score=112.40  Aligned_cols=111  Identities=15%  Similarity=0.119  Sum_probs=91.0

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccH--HH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK--DR  114 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~--~~  114 (240)
                      ++|||||+|.||+.+|+.|...|++|++|| ++...+...+.|+....+++++++++|+|++++|....+..++..  +.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l   82 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGC   82 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhH
Confidence            589999999999999999999999999999 776666565557766678999999999999999966555555532  34


Q ss_pred             HccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       115 l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      ...++++.++|++++|...+.+.+.+.+.+..+.
T Consensus        83 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~  116 (295)
T 1yb4_A           83 AKTSLQGKTIVDMSSISPIETKRFAQRVNEMGAD  116 (295)
T ss_dssp             TTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTEE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            4568899999999999888888999999875443

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=99.33  E-value=4.1e-12  Score=118.49  Aligned_cols=114  Identities=11%  Similarity=0.131  Sum_probs=95.7

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-----cCceecCCHHhhcCc---CCEEEEcCCCChhhh
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----TGAKFEEDLDTMLPK---CDIVVVNTPLTEKTR  107 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-----~g~~~~~~l~ell~~---aDiVvl~lp~~~~t~  107 (240)
                      ..+|||||+|.||..+|..|...|++|.+||+++...+...+     .|+....+++++++.   +|+|++++|....++
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~   89 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVD   89 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHHH
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHH
Confidence            468999999999999999999999999999998755555544     467667789998876   999999999777777


Q ss_pred             hcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEE
Q 026360          108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY  150 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga  150 (240)
                      .++ .+....+++|.+||+++.+...+...+.+.+.+..+...
T Consensus        90 ~vl-~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v  131 (497)
T 2p4q_A           90 ALI-NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFV  131 (497)
T ss_dssp             HHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             HHH-HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCcee
Confidence            777 467778999999999999998888899999987655533

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=99.32  E-value=4.3e-12  Score=115.07  Aligned_cols=98  Identities=20%  Similarity=0.297  Sum_probs=81.0

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-----------------------------
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----------------------------   83 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----------------------------   83 (240)
                      .+.+.+|+|+|+|.+|..+|+.++++|++|+++|+++...+.+.+.|....                             
T Consensus       187 ~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~  266 (405)
T 4dio_A          187 TVPAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQA  266 (405)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHH
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhH
Confidence            478999999999999999999999999999999998766666666665432                             


Q ss_pred             CCHHhhcCcCCEEEEcC--CCChhhhhcccHHHHccCCCCCEEEEcC--CCc
Q 026360           84 EDLDTMLPKCDIVVVNT--PLTEKTRGMFDKDRIAKMKKGVLIVNNA--RGA  131 (240)
Q Consensus        84 ~~l~ell~~aDiVvl~l--p~~~~t~~~i~~~~l~~mk~gailIN~s--rg~  131 (240)
                      .++++.++++|+|+.++  |.. ....+++++.++.||||++|||+|  +|+
T Consensus       267 ~~l~e~l~~aDVVI~tvlipg~-~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG  317 (405)
T 4dio_A          267 ALVAEHIAKQDIVITTALIPGR-PAPRLVTREMLDSMKPGSVVVDLAVERGG  317 (405)
T ss_dssp             HHHHHHHHTCSEEEECCCCSSS-CCCCCBCHHHHTTSCTTCEEEETTGGGTC
T ss_pred             hHHHHHhcCCCEEEECCcCCCC-CCCEEecHHHHhcCCCCCEEEEEeCCCCC
Confidence            15678899999999875  432 356788999999999999999998  454

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=99.32  E-value=2e-12  Score=112.01  Aligned_cols=109  Identities=16%  Similarity=0.231  Sum_probs=88.0

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccH--HH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK--DR  114 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~--~~  114 (240)
                      ++|||||+|.||..+|+.|...|++|++||+++...+...+.|+....+++++++++|+|++++|....++.++..  ..
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~   80 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGI   80 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSG
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhH
Confidence            4799999999999999999999999999999765555555567777778999999999999999876666665532  24


Q ss_pred             HccCCCCCEEEEcCCCcccCHHHHHHHHHhC
Q 026360          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (240)
Q Consensus       115 l~~mk~gailIN~srg~~vd~~aL~~aL~~g  145 (240)
                      ++.++++.++|+++...+-+.+.+.+.+.+.
T Consensus        81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~  111 (296)
T 2gf2_A           81 LKKVKKGSLLIDSSTIDPAVSKELAKEVEKM  111 (296)
T ss_dssp             GGTCCTTCEEEECSCCCHHHHHHHHHHHHHT
T ss_pred             HhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            4568899999998887777777777777653

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=99.31  E-value=9.3e-12  Score=112.46  Aligned_cols=98  Identities=22%  Similarity=0.312  Sum_probs=81.2

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec--CC-------------------------
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE--ED-------------------------   85 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~--~~-------------------------   85 (240)
                      ++.|++|+|+|.|.+|..+++.++.+|++|+++|+++...+.+.++|....  +.                         
T Consensus       169 ~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~  248 (384)
T 1l7d_A          169 TVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA  248 (384)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhH
Confidence            689999999999999999999999999999999998766666666776543  11                         


Q ss_pred             --HHhhcCcCCEEEEcC--CCChhhhhcccHHHHccCCCCCEEEEcC--CCc
Q 026360           86 --LDTMLPKCDIVVVNT--PLTEKTRGMFDKDRIAKMKKGVLIVNNA--RGA  131 (240)
Q Consensus        86 --l~ell~~aDiVvl~l--p~~~~t~~~i~~~~l~~mk~gailIN~s--rg~  131 (240)
                        ++++++++|+|+.++  |..+ +..+++++.++.||+|+++||++  ||+
T Consensus       249 ~~l~~~~~~aDvVi~~~~~pg~~-~~~li~~~~l~~mk~g~vivdva~~~gg  299 (384)
T 1l7d_A          249 EAVLKELVKTDIAITTALIPGKP-APVLITEEMVTKMKPGSVIIDLAVEAGG  299 (384)
T ss_dssp             HHHHHHHTTCSEEEECCCCTTSC-CCCCSCHHHHTTSCTTCEEEETTGGGTC
T ss_pred             HHHHHHhCCCCEEEECCccCCCC-CCeeeCHHHHhcCCCCCEEEEEecCCCC
Confidence              678889999999887  4332 34678889999999999999999  654

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=99.31  E-value=4.3e-12  Score=111.13  Aligned_cols=112  Identities=14%  Similarity=0.200  Sum_probs=91.7

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccH--HH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK--DR  114 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~--~~  114 (240)
                      ++|+|||+|.||..+|..|...|++|.+||+++...+...+.|+....+++++++++|+|++++|....++.++..  ..
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~~  110 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGV  110 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchhH
Confidence            7899999999999999999999999999999866555556667777778989999999999999966666555432  23


Q ss_pred             HccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       115 l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      ++.++++.++|+++++.....+.+.+.+....+.
T Consensus       111 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~  144 (316)
T 2uyy_A          111 LQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGR  144 (316)
T ss_dssp             GGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            4678999999999998877788888888765544

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=99.30  E-value=3.8e-12  Score=109.60  Aligned_cols=109  Identities=12%  Similarity=0.142  Sum_probs=87.8

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA  116 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~  116 (240)
                      ++|+|||+|.||..+|..|.. |++|.+||+++...+...+.|+.... ++++++++|+|++++|....+..++ .+...
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v~-~~l~~   78 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLPTTREVYEVA-EALYP   78 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCSSHHHHHHHH-HHHTT
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccC-HHHHHhCCCEEEEeCCChHHHHHHH-HHHHh
Confidence            479999999999999999999 99999999976544444444555554 7788899999999999665566555 45567


Q ss_pred             cCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360          117 KMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       117 ~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      .++++.++|+++.+...+.+.+.+.+.+..+.
T Consensus        79 ~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~  110 (289)
T 2cvz_A           79 YLREGTYWVDATSGEPEASRRLAERLREKGVT  110 (289)
T ss_dssp             TCCTTEEEEECSCCCHHHHHHHHHHHHTTTEE
T ss_pred             hCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            78999999999999888888999999875443

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=99.28  E-value=8.2e-12  Score=116.05  Aligned_cols=117  Identities=12%  Similarity=0.124  Sum_probs=94.9

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-----cCceecCCHHhhc---CcCCEEEEcCCCChhhhh
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----TGAKFEEDLDTML---PKCDIVVVNTPLTEKTRG  108 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-----~g~~~~~~l~ell---~~aDiVvl~lp~~~~t~~  108 (240)
                      ++|||||+|.||..+|..|...|++|.+||+++...+...+     .|+....++++++   +++|+|++++|....+..
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~   82 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN   82 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHH
Confidence            57999999999999999999999999999997655554444     5666677898886   489999999997666777


Q ss_pred             cccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeC
Q 026360          109 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV  154 (240)
Q Consensus       109 ~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV  154 (240)
                      ++. +....+++|.+||+++.|...+...+.+.+.+..+......|
T Consensus        83 vl~-~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv  127 (482)
T 2pgd_A           83 FIE-KLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGV  127 (482)
T ss_dssp             HHH-HHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             HHH-HHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCC
Confidence            663 566778999999999999888888888888876655444444

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=99.28  E-value=8.8e-12  Score=115.60  Aligned_cols=118  Identities=14%  Similarity=0.146  Sum_probs=94.7

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc----CceecCCHHhhcCc---CCEEEEcCCCChhhhhc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----GAKFEEDLDTMLPK---CDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~----g~~~~~~l~ell~~---aDiVvl~lp~~~~t~~~  109 (240)
                      ++|||||+|.||+.+|..|...|++|.+||+++...+...+.    |+....+++++++.   +|+|++++|....+..+
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~v   85 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDAT   85 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHH
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHH
Confidence            689999999999999999999999999999976444444332    66667789998776   99999999977667766


Q ss_pred             ccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCC
Q 026360          110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~  155 (240)
                      + .+....+++|.+||+++.|...+...+.+.+.+..+......|.
T Consensus        86 l-~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv~  130 (474)
T 2iz1_A           86 I-KSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVS  130 (474)
T ss_dssp             H-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEEC
T ss_pred             H-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCCC
Confidence            6 35667899999999999998888888999888766654444443

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.26  E-value=2.5e-12  Score=109.13  Aligned_cols=96  Identities=14%  Similarity=0.185  Sum_probs=68.2

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCC--------------hhH-HHhcCceecCCHHhhcCcCCE
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD--------------PQL-EKETGAKFEEDLDTMLPKCDI   95 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~--------------~~~-~~~~g~~~~~~l~ell~~aDi   95 (240)
                      ..++.+++|||||+|.||..+|+.|...|++|++||+++..              ... ....+.....++++++++||+
T Consensus        14 ~~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aDv   93 (245)
T 3dtt_A           14 NLYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGAEL   93 (245)
T ss_dssp             -----CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHHCSE
T ss_pred             ccccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhcCCE
Confidence            45789999999999999999999999999999999987532              111 122344445688999999999


Q ss_pred             EEEcCCCChhhhhcccHHH-HccCCCCCEEEEcCC
Q 026360           96 VVVNTPLTEKTRGMFDKDR-IAKMKKGVLIVNNAR  129 (240)
Q Consensus        96 Vvl~lp~~~~t~~~i~~~~-l~~mk~gailIN~sr  129 (240)
                      |++++|...... .+. +. ...+ ++.++|+++.
T Consensus        94 Vilavp~~~~~~-~~~-~i~~~~l-~g~ivi~~s~  125 (245)
T 3dtt_A           94 VVNATEGASSIA-ALT-AAGAENL-AGKILVDIAN  125 (245)
T ss_dssp             EEECSCGGGHHH-HHH-HHCHHHH-TTSEEEECCC
T ss_pred             EEEccCcHHHHH-HHH-Hhhhhhc-CCCEEEECCC
Confidence            999999554332 222 22 2234 8999999994

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.26  E-value=2.8e-11  Score=105.55  Aligned_cols=137  Identities=14%  Similarity=0.123  Sum_probs=88.4

Q ss_pred             HHHHHHHcCCCccCcccccccccCCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhc
Q 026360           12 PGHHQVISGEWNVAGVAYRAYDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML   90 (240)
Q Consensus        12 ~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell   90 (240)
                      ..+...+++.|....       ...++||||| +|.||.++|..|+..|++|+++|+++.             .+.++.+
T Consensus         4 ~~~~~~~~~~~~~~~-------~~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~-------------~~~~~~~   63 (298)
T 2pv7_A            4 ESYANENQFGFKTIN-------SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW-------------AVAESIL   63 (298)
T ss_dssp             ---------CCCCSC-------TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG-------------GGHHHHH
T ss_pred             hHHhhhhccCccccC-------CCCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc-------------cCHHHHh
Confidence            334556667785321       1356899999 999999999999999999999998642             1567788


Q ss_pred             CcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCC-CCCCCCCC
Q 026360           91 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP-KDHPWRYM  169 (240)
Q Consensus        91 ~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~-~~~~l~~~  169 (240)
                      ++||+|++++|... +..++ .+....++++++++++++......+++.+.+   ...     +....|.. +..+++..
T Consensus        64 ~~aDvVilavp~~~-~~~vl-~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~---~~~-----~v~~hP~~g~~~~~~~g  133 (298)
T 2pv7_A           64 ANADVVIVSVPINL-TLETI-ERLKPYLTENMLLADLTSVKREPLAKMLEVH---TGA-----VLGLHPMFGADIASMAK  133 (298)
T ss_dssp             TTCSEEEECSCGGG-HHHHH-HHHGGGCCTTSEEEECCSCCHHHHHHHHHHC---SSE-----EEEEEECSCTTCSCCTT
T ss_pred             cCCCEEEEeCCHHH-HHHHH-HHHHhhcCCCcEEEECCCCCcHHHHHHHHhc---CCC-----EEeeCCCCCCCchhhcC
Confidence            99999999999543 55555 3556678999999999876654444444442   122     11222321 12245555


Q ss_pred             CCeEEcCCC
Q 026360          170 PNQAMTPHV  178 (240)
Q Consensus       170 ~nv~~TPH~  178 (240)
                      ..+++|||-
T Consensus       134 ~~~~l~~~~  142 (298)
T 2pv7_A          134 QVVVRCDGR  142 (298)
T ss_dssp             CEEEEEEEE
T ss_pred             CeEEEecCC
Confidence            678999964

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=99.23  E-value=2.1e-11  Score=113.25  Aligned_cols=118  Identities=14%  Similarity=0.130  Sum_probs=93.3

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-cC-------ceecCCHHhhcC---cCCEEEEcCCCChh
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TG-------AKFEEDLDTMLP---KCDIVVVNTPLTEK  105 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-~g-------~~~~~~l~ell~---~aDiVvl~lp~~~~  105 (240)
                      ++|||||+|.||+.+|..|...|++|.+||+++...+...+ .|       +....+++++++   .+|+|++++|....
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~   81 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH
Confidence            47999999999999999999999999999997544433332 35       556678888876   49999999997766


Q ss_pred             hhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCC
Q 026360          106 TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~  155 (240)
                      +..++ .+....++++.++|+++.|...+...+.+.+.+..+......|.
T Consensus        82 v~~vl-~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~  130 (478)
T 1pgj_A           82 TDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGIS  130 (478)
T ss_dssp             HHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEE
T ss_pred             HHHHH-HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeecc
Confidence            77666 45667789999999999998888888999998766654444443

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.22  E-value=1.2e-11  Score=109.86  Aligned_cols=136  Identities=18%  Similarity=0.188  Sum_probs=94.1

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCC-hhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~  111 (240)
                      .+.+++|||||+|.||+++|+.|+..|++|+++++++.. .+.+...|+... ++++++++||+|++++|... ...++.
T Consensus        13 ~l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~-~~~e~~~~aDvVilavp~~~-~~~v~~   90 (338)
T 1np3_A           13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTPDEF-QGRLYK   90 (338)
T ss_dssp             HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSCHHH-HHHHHH
T ss_pred             hhcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEc-cHHHHHhcCCEEEEeCCcHH-HHHHHH
Confidence            578999999999999999999999999999999987643 345556787665 88899999999999999433 344444


Q ss_pred             HHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCC---CCC---CCCeEEcCCCC
Q 026360          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHP---WRY---MPNQAMTPHVS  179 (240)
Q Consensus       112 ~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~---l~~---~~nv~~TPH~a  179 (240)
                      .+....+++++++++++ |  +..  ..+.+.    ....+||+...|..+.+.   ++.   -.++++|||..
T Consensus        91 ~~i~~~l~~~~ivi~~~-g--v~~--~~~~~~----~~~~~~vv~~~P~gp~~a~~~l~~~G~g~~~ii~~~~~  155 (338)
T 1np3_A           91 EEIEPNLKKGATLAFAH-G--FSI--HYNQVV----PRADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQD  155 (338)
T ss_dssp             HHTGGGCCTTCEEEESC-C--HHH--HTTSSC----CCTTCEEEEEEESSCSHHHHHHHHTTCCCCEEEEEEEC
T ss_pred             HHHHhhCCCCCEEEEcC-C--chh--HHHhhc----CCCCcEEEeccCCCCchhHHHHHhccCCCeEEEEecCC
Confidence            35566799999999874 3  222  222211    122344554455433332   232   45688899864

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=99.22  E-value=2.9e-11  Score=111.87  Aligned_cols=95  Identities=20%  Similarity=0.271  Sum_probs=81.0

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcc
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i  110 (240)
                      +.++.|++++|+|+|.||+.+|+.|+++|++|+++|+++.....+...++.. .+++++++.+|+++.+..    +..++
T Consensus       260 g~~L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv-~~lee~~~~aDvVi~atG----~~~vl  334 (488)
T 3ond_A          260 DVMIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQV-LTLEDVVSEADIFVTTTG----NKDII  334 (488)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCGGGTTTTCSEEEECSS----CSCSB
T ss_pred             CCcccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCcc-CCHHHHHHhcCEEEeCCC----Chhhh
Confidence            3468999999999999999999999999999999998764444455566654 488999999999998754    46788


Q ss_pred             cHHHHccCCCCCEEEEcCCC
Q 026360          111 DKDRIAKMKKGVLIVNNARG  130 (240)
Q Consensus       111 ~~~~l~~mk~gailIN~srg  130 (240)
                      +.+.++.||++++++|+|++
T Consensus       335 ~~e~l~~mk~gaiVvNaG~~  354 (488)
T 3ond_A          335 MLDHMKKMKNNAIVCNIGHF  354 (488)
T ss_dssp             CHHHHTTSCTTEEEEESSST
T ss_pred             hHHHHHhcCCCeEEEEcCCC
Confidence            88899999999999999998

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=99.21  E-value=5.2e-11  Score=103.99  Aligned_cols=129  Identities=14%  Similarity=0.197  Sum_probs=91.1

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc-------CceecCCHHhhcCcCCEEEEcCCCChhh
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-------GAKFEEDLDTMLPKCDIVVVNTPLTEKT  106 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~-------g~~~~~~l~ell~~aDiVvl~lp~~~~t  106 (240)
                      -.-|+|||||+|.||..+|..+. .|++|++||+++...+.+.+.       ++...+++++ +++||+|+.++|...+.
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~v   87 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNT   87 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHH
T ss_pred             cCCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHH
Confidence            35789999999999999999999 999999999986554444443       5655667877 89999999999988887


Q ss_pred             hhcccHHHHccCCCCCEEE-EcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCCCCCCCeEEcCCC
Q 026360          107 RGMFDKDRIAKMKKGVLIV-NNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHV  178 (240)
Q Consensus       107 ~~~i~~~~l~~mk~gailI-N~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nv~~TPH~  178 (240)
                      +..+..+ +..+ ++++++ |+|.-++   ..+.+.+. ......++.-+.  |.      ...+-+.++|+-
T Consensus        88 k~~l~~~-l~~~-~~~IlasntSti~~---~~~a~~~~-~~~r~~G~Hf~~--Pv------~~~~lveiv~g~  146 (293)
T 1zej_A           88 KVEVLRE-VERL-TNAPLCSNTSVISV---DDIAERLD-SPSRFLGVHWMN--PP------HVMPLVEIVISR  146 (293)
T ss_dssp             HHHHHHH-HHTT-CCSCEEECCSSSCH---HHHHTTSS-CGGGEEEEEECS--ST------TTCCEEEEEECT
T ss_pred             HHHHHHH-HhcC-CCCEEEEECCCcCH---HHHHHHhh-cccceEeEEecC--cc------ccCCEEEEECCC
Confidence            7766544 5566 999885 7776443   45554443 233445655444  32      234556677753

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=99.20  E-value=1.6e-11  Score=104.66  Aligned_cols=103  Identities=13%  Similarity=0.165  Sum_probs=80.1

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCC--CCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV--KMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~--~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~  114 (240)
                      ++|||||+|.||..+|..|...|++|+++|+.  +...+...+.|+.  .+++++++++|+|++++|.......+  .+.
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~aDvvi~~v~~~~~~~~~--~~~   76 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT--ETSEEDVYSCPVVISAVTPGVALGAA--RRA   76 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE--ECCHHHHHTSSEEEECSCGGGHHHHH--HHH
T ss_pred             CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc--CCHHHHHhcCCEEEEECCCHHHHHHH--HHH
Confidence            47999999999999999999999999998873  2122333345666  57888899999999999965555443  456


Q ss_pred             HccCCCCCEEEEcCCCcccCHHHHHHHHHhC
Q 026360          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (240)
Q Consensus       115 l~~mk~gailIN~srg~~vd~~aL~~aL~~g  145 (240)
                      ...+++  ++|+++.+...+.+.+.+.+.+.
T Consensus        77 ~~~~~~--~vi~~s~~~~~~~~~l~~~~~~~  105 (264)
T 1i36_A           77 GRHVRG--IYVDINNISPETVRMASSLIEKG  105 (264)
T ss_dssp             HTTCCS--EEEECSCCCHHHHHHHHHHCSSS
T ss_pred             HHhcCc--EEEEccCCCHHHHHHHHHHHhhC
Confidence            666776  99999988887788888888664

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=99.18  E-value=2.6e-11  Score=103.48  Aligned_cols=100  Identities=15%  Similarity=0.235  Sum_probs=78.8

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCCCChhHHHh-cCceecCCHHhhcCcCCEEEEcCCCChhhhhcc
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKE-TGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~~~~~~~~~-~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i  110 (240)
                      ++.+++|||||+|.||+.+|..+...|++ |.+||+++...+...+ .|+....+++++++++|+|++++|.. ....++
T Consensus         7 ~~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~-~~~~v~   85 (266)
T 3d1l_A            7 SIEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDS-AFAELL   85 (266)
T ss_dssp             CGGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHH-HHHHHH
T ss_pred             CCCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHH-HHHHHH
Confidence            45678999999999999999999988998 8999987544433333 47776778999999999999999944 334444


Q ss_pred             cHHHHccCCCCCEEEEcCCCcccC
Q 026360          111 DKDRIAKMKKGVLIVNNARGAIMD  134 (240)
Q Consensus       111 ~~~~l~~mk~gailIN~srg~~vd  134 (240)
                       .+....+++++++|+++.|...+
T Consensus        86 -~~l~~~~~~~~ivv~~s~~~~~~  108 (266)
T 3d1l_A           86 -QGIVEGKREEALMVHTAGSIPMN  108 (266)
T ss_dssp             -HHHHTTCCTTCEEEECCTTSCGG
T ss_pred             -HHHHhhcCCCcEEEECCCCCchH
Confidence             35556788999999999987654

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=99.18  E-value=1.7e-11  Score=112.95  Aligned_cols=96  Identities=17%  Similarity=0.232  Sum_probs=76.8

Q ss_pred             cccCC-CeEEEEccChHHHHHHHHhccC------CCEEEEEcCC-CCChhHHHhcCcee----cCCHHhhcCcCCEEEEc
Q 026360           32 YDLEG-KTVGTVGCGRIGKLLLQRLKPF------NCNLLYHDRV-KMDPQLEKETGAKF----EEDLDTMLPKCDIVVVN   99 (240)
Q Consensus        32 ~~l~g-~~vgIIG~G~iG~~~A~~l~~~------G~~V~~~d~~-~~~~~~~~~~g~~~----~~~l~ell~~aDiVvl~   99 (240)
                      ..|+| ++|||||+|.||.++|+.|+..      |++|++.++. +...+.+.+.|+..    ..++++++++||+|+++
T Consensus        49 ~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILa  128 (525)
T 3fr7_A           49 EAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLL  128 (525)
T ss_dssp             HHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEEC
T ss_pred             HHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEEC
Confidence            46899 9999999999999999999988      9998766554 44555666778764    25889999999999999


Q ss_pred             CCCChhhhhcccHHHHccCCCCCEEEEcCCC
Q 026360          100 TPLTEKTRGMFDKDRIAKMKKGVLIVNNARG  130 (240)
Q Consensus       100 lp~~~~t~~~i~~~~l~~mk~gailIN~srg  130 (240)
                      +|..... .++. +.+..||+|++ |..+.|
T Consensus       129 VP~~~~~-eVl~-eI~p~LK~GaI-Ls~AaG  156 (525)
T 3fr7_A          129 ISDAAQA-DNYE-KIFSHMKPNSI-LGLSHG  156 (525)
T ss_dssp             SCHHHHH-HHHH-HHHHHSCTTCE-EEESSS
T ss_pred             CChHHHH-HHHH-HHHHhcCCCCe-EEEeCC
Confidence            9965543 4554 78899999998 566667

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=98.78  E-value=2.9e-12  Score=105.96  Aligned_cols=94  Identities=16%  Similarity=0.198  Sum_probs=74.8

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHH
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  113 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~  113 (240)
                      +.+++|||||+|.||+.+|+.|.+.|++|++|+|++. .+.....|+... +++++++++|+|++++|.. .+..++  +
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~-~~~~~~~~aDvVilav~~~-~~~~v~--~   91 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLPRGAEVL-CYSEAASRSDVIVLAVHRE-HYDFLA--E   91 (201)
Confidence            6788999999999999999999999999999998764 333333455544 7888899999999999964 455554  2


Q ss_pred             HHccCCCCCEEEEcCCCccc
Q 026360          114 RIAKMKKGVLIVNNARGAIM  133 (240)
Q Consensus       114 ~l~~mk~gailIN~srg~~v  133 (240)
                       +..+++++++||+++|-..
T Consensus        92 -l~~~~~~~ivI~~~~G~~~  110 (201)
T 2yjz_A           92 -LADSLKGRVLIDVSNNQKM  110 (201)
Confidence             4456789999999999754

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=99.13  E-value=3.7e-11  Score=111.18  Aligned_cols=138  Identities=12%  Similarity=0.170  Sum_probs=94.3

Q ss_pred             CeEEEEccChHHHHHHHHhccC--CCEEEEEcCCCCChhHHH---------------h----cCceecCCHHhhcCcCCE
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPF--NCNLLYHDRVKMDPQLEK---------------E----TGAKFEEDLDTMLPKCDI   95 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~--G~~V~~~d~~~~~~~~~~---------------~----~g~~~~~~l~ell~~aDi   95 (240)
                      ++|+|||+|.||..+|..|...  |++|++||+++...+...               .    .++...+++++.+++||+
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aDv   85 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADL   85 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCCE
Confidence            5899999999999999999887  899999998753322211               1    245555688888999999


Q ss_pred             EEEcCCCChhhhhc-------------ccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEee-CCCCCCCC
Q 026360           96 VVVNTPLTEKTRGM-------------FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD-VWNPQPAP  161 (240)
Q Consensus        96 Vvl~lp~~~~t~~~-------------i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lD-V~~~EP~~  161 (240)
                      |++|+|........             ..++..+.+++++++|++|+..+-..+.+.+.+.+....+.... ++.+|+..
T Consensus        86 ViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~~~d~~V~~~Pe~~~  165 (467)
T 2q3e_A           86 VFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLA  165 (467)
T ss_dssp             EEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCTTCEEEEEECCCCCC
T ss_pred             EEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCCCCCeEEEeCHHHhh
Confidence            99999854332221             12345567899999999999888888889999987643221112 24455544


Q ss_pred             CCCC---CCCCCCeEE
Q 026360          162 KDHP---WRYMPNQAM  174 (240)
Q Consensus       162 ~~~~---l~~~~nv~~  174 (240)
                      +...   +...+++++
T Consensus       166 ~G~~~~d~~~~~rivv  181 (467)
T 2q3e_A          166 EGTAIKDLKNPDRVLI  181 (467)
T ss_dssp             TTSHHHHHHSCSCEEE
T ss_pred             cccchhhccCCCEEEE
Confidence            3332   344455553

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=99.10  E-value=3.8e-10  Score=96.54  Aligned_cols=108  Identities=14%  Similarity=0.162  Sum_probs=80.9

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChh-HHHhcCceecCCHHhhcCcCCEEEEcCCCCh--hhhh
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETGAKFEEDLDTMLPKCDIVVVNTPLTE--KTRG  108 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~--~t~~  108 (240)
                      .++.| +++|||+|.+|+.+++.|...|++|.++|++....+ .+...+.. ..+++++ +++|+|++++|...  .+..
T Consensus       113 ~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~-~~~~~~~-~~~Divi~~tp~~~~~~~~~  189 (263)
T 2d5c_A          113 IPLKG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLR-AVPLEKA-REARLLVNATRVGLEDPSAS  189 (263)
T ss_dssp             CCCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCE-ECCGGGG-GGCSEEEECSSTTTTCTTCC
T ss_pred             CCCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccc-hhhHhhc-cCCCEEEEccCCCCCCCCCC
Confidence            46889 999999999999999999999999999998753322 23344555 4578888 99999999999652  2223


Q ss_pred             cccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCc
Q 026360          109 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI  147 (240)
Q Consensus       109 ~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i  147 (240)
                      .+.   .+.+++|.+++|++.+.. +. .+.+++++..+
T Consensus       190 ~l~---~~~l~~g~~viD~~~~p~-~t-~l~~~a~~~g~  223 (263)
T 2d5c_A          190 PLP---AELFPEEGAAVDLVYRPL-WT-RFLREAKAKGL  223 (263)
T ss_dssp             SSC---GGGSCSSSEEEESCCSSS-SC-HHHHHHHHTTC
T ss_pred             CCC---HHHcCCCCEEEEeecCCc-cc-HHHHHHHHCcC
Confidence            343   456899999999998744 33 47777776444

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=99.10  E-value=3.6e-10  Score=99.51  Aligned_cols=107  Identities=12%  Similarity=0.202  Sum_probs=82.4

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCC----CEEEEEcCCCC--ChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhh
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKM--DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G----~~V~~~d~~~~--~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~  107 (240)
                      ...++|||||+|.||..+|..|...|    ++|++||+++.  ..+...+.|+....+..++++++|+|++++| .....
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~-~~~~~   98 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVK-PHIIP   98 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSC-GGGHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeC-HHHHH
Confidence            45578999999999999999999888    78999999764  3444556688777788899999999999999 44455


Q ss_pred             hcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360          108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~  144 (240)
                      .++ .+....++++.++|+++.|-  ..+.+.+.+.+
T Consensus        99 ~vl-~~l~~~l~~~~ivvs~s~gi--~~~~l~~~l~~  132 (322)
T 2izz_A           99 FIL-DEIGADIEDRHIVVSCAAGV--TISSIEKKLSA  132 (322)
T ss_dssp             HHH-HHHGGGCCTTCEEEECCTTC--CHHHHHHHHHT
T ss_pred             HHH-HHHHhhcCCCCEEEEeCCCC--CHHHHHHHHhh
Confidence            544 35556688999999998764  34567777764

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=99.08  E-value=2.6e-10  Score=102.37  Aligned_cols=108  Identities=22%  Similarity=0.277  Sum_probs=84.3

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChh-HHHhcCceecCCHHhhcC-cCCEEEEcCCCChhhhhcc
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETGAKFEEDLDTMLP-KCDIVVVNTPLTEKTRGMF  110 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~~g~~~~~~l~ell~-~aDiVvl~lp~~~~t~~~i  110 (240)
                      +|.|++|+|+|+|+||+.+|+.|.++|++|+++|+++.... .+...+...+ +.++++. +||+++.|.     +.+++
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v-~~~~ll~~~~DIvip~a-----~~~~I  243 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCA-----LGAVL  243 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECS-----CSCCB
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-ChHHHhccCCcEeeccc-----hHHHh
Confidence            68999999999999999999999999999999998653322 3344576665 6677766 899999875     46678


Q ss_pred             cHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360          111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       111 ~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      +.+.++.++ ..+|++.+++++.+++ ..+.|+++++.
T Consensus       244 ~~~~~~~lg-~~iV~e~An~p~t~~e-a~~~L~~~Gi~  279 (364)
T 1leh_A          244 NDFTIPQLK-AKVIAGSADNQLKDPR-HGKYLHELGIV  279 (364)
T ss_dssp             STTHHHHCC-CSEECCSCSCCBSSHH-HHHHHHHHTCE
T ss_pred             CHHHHHhCC-CcEEEeCCCCCcccHH-HHHHHHhCCCE
Confidence            877788884 5688899999888755 55667766654

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=99.07  E-value=1.4e-10  Score=98.15  Aligned_cols=104  Identities=17%  Similarity=0.319  Sum_probs=79.0

Q ss_pred             CeEEEEccChHHHHHHHHhccCCC----EEEEEcCCCCChhHHH-hcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNC----NLLYHDRVKMDPQLEK-ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~----~V~~~d~~~~~~~~~~-~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~  111 (240)
                      ++|||||+|.||..+++.|...|+    +|.+||+++...+... ..|+....+.+++++++|+|++++|. .....++ 
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~~-~~~~~v~-   80 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIKP-DLYASII-   80 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSCT-TTHHHHC-
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeCH-HHHHHHH-
Confidence            689999999999999999999998    9999999765444443 45888778999999999999999973 3334444 


Q ss_pred             HHHHccCCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (240)
Q Consensus       112 ~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~  144 (240)
                      ++....++++.++|++..|-  ..+.+.+.+..
T Consensus        81 ~~l~~~l~~~~~vvs~~~gi--~~~~l~~~~~~  111 (247)
T 3gt0_A           81 NEIKEIIKNDAIIVTIAAGK--SIESTENAFNK  111 (247)
T ss_dssp             ---CCSSCTTCEEEECSCCS--CHHHHHHHHCS
T ss_pred             HHHHhhcCCCCEEEEecCCC--CHHHHHHHhCC
Confidence            45556688999999776553  45667676654

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=99.07  E-value=3.2e-10  Score=98.14  Aligned_cols=105  Identities=14%  Similarity=0.166  Sum_probs=81.6

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCC---EEEEEcCCCCChhHHHh-cCceecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNC---NLLYHDRVKMDPQLEKE-TGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~---~V~~~d~~~~~~~~~~~-~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~  111 (240)
                      .++|||||+|+||..+++.+...|+   +|++||+++...+...+ .|+....+..++++++|+|++++|. .....++ 
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~p-~~~~~vl-   80 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKP-HQIKMVC-   80 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSCG-GGHHHHH-
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeCH-HHHHHHH-
Confidence            5789999999999999999999998   89999998755554444 4887777899999999999999983 3333333 


Q ss_pred             HHHHcc-CCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360          112 KDRIAK-MKKGVLIVNNARGAIMDTQAVVDACSS  144 (240)
Q Consensus       112 ~~~l~~-mk~gailIN~srg~~vd~~aL~~aL~~  144 (240)
                      ++.... ++++.++|+++.|-  ..+.+.+.+..
T Consensus        81 ~~l~~~~l~~~~iiiS~~agi--~~~~l~~~l~~  112 (280)
T 3tri_A           81 EELKDILSETKILVISLAVGV--TTPLIEKWLGK  112 (280)
T ss_dssp             HHHHHHHHTTTCEEEECCTTC--CHHHHHHHHTC
T ss_pred             HHHHhhccCCCeEEEEecCCC--CHHHHHHHcCC
Confidence            344444 68888999887664  45778788765

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=99.06  E-value=2.3e-10  Score=98.89  Aligned_cols=92  Identities=18%  Similarity=0.299  Sum_probs=73.3

Q ss_pred             CeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHH
Q 026360           37 KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  115 (240)
Q Consensus        37 ~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l  115 (240)
                      ++|+|||+ |.||..+|+.|...|++|++||+++...+...+.|+... +..++++++|+|++++|... +..++ .+..
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~aDvVi~av~~~~-~~~v~-~~l~   88 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLT-DGDGWIDEADVVVLALPDNI-IEKVA-EDIV   88 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCCC-CSSGGGGTCSEEEECSCHHH-HHHHH-HHHG
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCcC-CHHHHhcCCCEEEEcCCchH-HHHHH-HHHH
Confidence            58999999 999999999999999999999987544444445565543 67788899999999999433 44444 4566


Q ss_pred             ccCCCCCEEEEcCCCc
Q 026360          116 AKMKKGVLIVNNARGA  131 (240)
Q Consensus       116 ~~mk~gailIN~srg~  131 (240)
                      ..+++++++|+++.|.
T Consensus        89 ~~l~~~~ivv~~s~~~  104 (286)
T 3c24_A           89 PRVRPGTIVLILDAAA  104 (286)
T ss_dssp             GGSCTTCEEEESCSHH
T ss_pred             HhCCCCCEEEECCCCc
Confidence            6789999999998876

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=99.06  E-value=3.4e-10  Score=97.68  Aligned_cols=107  Identities=13%  Similarity=0.218  Sum_probs=78.9

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhH-HHhcCceecCCHHhhcCcCCEEEEcCCCChh--hhh
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEK--TRG  108 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~-~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~--t~~  108 (240)
                      .++.|++++|||.|.+|+++++.|...|++|+++||++...+. +...|+....+++++++++|+|++++|....  +..
T Consensus       125 ~~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDiVi~atp~~~~~~~~~  204 (275)
T 2hk9_A          125 PEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGLKDEDPE  204 (275)
T ss_dssp             TTGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEEECSCGGGTGGGCSEEEECSSTTSSTTCCC
T ss_pred             CCcCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCeeehhHHhhhcCCCEEEEeCCCCCCCCCCC
Confidence            4678999999999999999999999999999999987533222 2234655555788889999999999996532  222


Q ss_pred             cccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhC
Q 026360          109 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (240)
Q Consensus       109 ~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g  145 (240)
                      .+.   .+.++++.+++|++.   . ...+.+..++.
T Consensus       205 ~i~---~~~l~~g~~viDv~~---~-~t~ll~~a~~~  234 (275)
T 2hk9_A          205 IFN---YDLIKKDHVVVDIIY---K-ETKLLKKAKEK  234 (275)
T ss_dssp             SSC---GGGCCTTSEEEESSS---S-CCHHHHHHHHT
T ss_pred             CCC---HHHcCCCCEEEEcCC---C-hHHHHHHHHHC
Confidence            343   356899999999987   2 33355555443

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=99.05  E-value=4.9e-10  Score=87.06  Aligned_cols=89  Identities=12%  Similarity=0.218  Sum_probs=70.2

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhH-HHhcCce--ecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-EKETGAK--FEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~-~~~~g~~--~~~~l~ell~~aDiVvl~lp~~~~t~~~i~  111 (240)
                      .+++++|||.|.||+.+++.|+..|++|.++++++...+. +...+..  ...+++++++++|+|+.++|..   ..++.
T Consensus        20 ~~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~---~~~~~   96 (144)
T 3oj0_A           20 GGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSK---TPIVE   96 (144)
T ss_dssp             CCCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCS---SCSBC
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCC---CcEee
Confidence            3899999999999999999999999999999997544332 3445543  4568889999999999999965   23444


Q ss_pred             HHHHccCCCCCEEEEcCC
Q 026360          112 KDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       112 ~~~l~~mk~gailIN~sr  129 (240)
                      .   +.+++|.+++|++.
T Consensus        97 ~---~~l~~g~~vid~~~  111 (144)
T 3oj0_A           97 E---RSLMPGKLFIDLGN  111 (144)
T ss_dssp             G---GGCCTTCEEEECCS
T ss_pred             H---HHcCCCCEEEEccC
Confidence            3   45788999999974

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=99.04  E-value=2e-10  Score=95.58  Aligned_cols=95  Identities=15%  Similarity=0.194  Sum_probs=71.3

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHH
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~  114 (240)
                      .+++|+|||+|.||+.+++.|...|++|.++|+++...+...+.|+... +++++++++|+|++++|. .....++.   
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~~DvVi~av~~-~~~~~v~~---  101 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVT-FQEEAVSSPEVIFVAVFR-EHYSSLCS---  101 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEE-EHHHHTTSCSEEEECSCG-GGSGGGGG---
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcee-cHHHHHhCCCEEEECCCh-HHHHHHHH---
Confidence            4579999999999999999999999999999987533333333466554 788899999999999994 33444442   


Q ss_pred             HccCCCCCEEEEcCCCcccC
Q 026360          115 IAKMKKGVLIVNNARGAIMD  134 (240)
Q Consensus       115 l~~mk~gailIN~srg~~vd  134 (240)
                      ++.+.+++++|++++|...+
T Consensus       102 l~~~~~~~~vv~~s~g~~~~  121 (215)
T 2vns_A          102 LSDQLAGKILVDVSNPTEQE  121 (215)
T ss_dssp             GHHHHTTCEEEECCCCCHHH
T ss_pred             HHHhcCCCEEEEeCCCcccc
Confidence            33333799999999997543

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=99.03  E-value=9.5e-10  Score=93.40  Aligned_cols=101  Identities=12%  Similarity=0.214  Sum_probs=77.3

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH-hcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  115 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l  115 (240)
                      ++|||||+|.||+.++..|...|.+|.+||+++...+... ..|+....+++++++++|+|++++| ....     .+.+
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~-----~~v~   77 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLF-----ETVL   77 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGH-----HHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhH-----HHHH
Confidence            5899999999999999999999999999998754433333 3477766789999999999999999 3332     3444


Q ss_pred             ccCCCCCEEEEcCCCcccCHHHHHHHHHhC
Q 026360          116 AKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (240)
Q Consensus       116 ~~mk~gailIN~srg~~vd~~aL~~aL~~g  145 (240)
                      ..++++.++|++..|--  .+.+.+.+..+
T Consensus        78 ~~l~~~~~vv~~~~~~~--~~~l~~~~~~~  105 (259)
T 2ahr_A           78 KPLHFKQPIISMAAGIS--LQRLATFVGQD  105 (259)
T ss_dssp             TTSCCCSCEEECCTTCC--HHHHHHHHCTT
T ss_pred             HHhccCCEEEEeCCCCC--HHHHHHhcCCC
Confidence            55678999999976643  45677766643

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=99.03  E-value=6.8e-10  Score=101.67  Aligned_cols=115  Identities=12%  Similarity=0.128  Sum_probs=85.8

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh------------------cCceecCCHHhhcCc
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE------------------TGAKFEEDLDTMLPK   92 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~------------------~g~~~~~~l~ell~~   92 (240)
                      +++..-++|+|||+|.||..+|..|.. |++|++||+++...+...+                  .++...+++++.+++
T Consensus        31 ~r~~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~  109 (432)
T 3pid_A           31 GRGSEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRN  109 (432)
T ss_dssp             ----CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHTT
T ss_pred             ccccCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHhC
Confidence            456677899999999999999999988 9999999997643332222                  134556788999999


Q ss_pred             CCEEEEcCCCChhh-------hhc--ccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCc
Q 026360           93 CDIVVVNTPLTEKT-------RGM--FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHI  147 (240)
Q Consensus        93 aDiVvl~lp~~~~t-------~~~--i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i  147 (240)
                      ||+|++++|.....       ..+  ..+...+ +++|+++|+.|+.++-..+.+.+.+.+..+
T Consensus       110 aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~v  172 (432)
T 3pid_A          110 ADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDNV  172 (432)
T ss_dssp             CSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCCE
T ss_pred             CCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhccE
Confidence            99999999954211       111  1235566 899999999999998889999998877544

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=99.02  E-value=6.5e-09  Score=95.84  Aligned_cols=138  Identities=17%  Similarity=0.150  Sum_probs=93.6

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCCh--------hHHHhcC-------------ceecCCHHhhcCcCCE
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--------QLEKETG-------------AKFEEDLDTMLPKCDI   95 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~--------~~~~~~g-------------~~~~~~l~ell~~aDi   95 (240)
                      ++|+|||.|.||..+|..+...|++|++||+++...        +...+.|             +...++++ .+++||+
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~aDl  133 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNCDL  133 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccCCE
Confidence            799999999999999999999999999999975411        0111222             23455775 6899999


Q ss_pred             EEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCCCCCCCeEEc
Q 026360           96 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMT  175 (240)
Q Consensus        96 Vvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nv~~T  175 (240)
                      |+.++|...+.+..+..+..+.++++++|++.+.+  +....+.+.+.. .-...++.-|.  |.+      .++-+.+.
T Consensus       134 VIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSs--l~i~~ia~~~~~-p~r~iG~Hffn--Pv~------~m~LvEIv  202 (460)
T 3k6j_A          134 IVESVIEDMKLKKELFANLENICKSTCIFGTNTSS--LDLNEISSVLRD-PSNLVGIHFFN--PAN------VIRLVEII  202 (460)
T ss_dssp             EEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS--SCHHHHHTTSSS-GGGEEEEECCS--STT------TCCEEEEE
T ss_pred             EEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCC--hhHHHHHHhccC-CcceEEEEecc--hhh------hCCEEEEE
Confidence            99999987777666667777889999999654433  444666666543 33556777554  432      23446666


Q ss_pred             CCCCCCcHHHHH
Q 026360          176 PHVSGTTIDAQV  187 (240)
Q Consensus       176 PH~a~~t~~~~~  187 (240)
                      |+-. .+.++.+
T Consensus       203 ~g~~-Ts~e~~~  213 (460)
T 3k6j_A          203 YGSH-TSSQAIA  213 (460)
T ss_dssp             CCSS-CCHHHHH
T ss_pred             eCCC-CCHHHHH
Confidence            6532 2344433

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=98.99  E-value=8.4e-10  Score=91.40  Aligned_cols=80  Identities=14%  Similarity=0.243  Sum_probs=62.1

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~  111 (240)
                      .++.+++|+|||+|.||..+|..|...|++|++||+++.                  .++++|+|++++| ++.+..++.
T Consensus        15 ~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~------------------~~~~aD~vi~av~-~~~~~~v~~   75 (209)
T 2raf_A           15 LYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ------------------ATTLGEIVIMAVP-YPALAALAK   75 (209)
T ss_dssp             -----CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC------------------CSSCCSEEEECSC-HHHHHHHHH
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH------------------HhccCCEEEEcCC-cHHHHHHHH
Confidence            468899999999999999999999999999999998652                  4678999999999 555555543


Q ss_pred             HHHHccCCCCCEEEEcCCCcc
Q 026360          112 KDRIAKMKKGVLIVNNARGAI  132 (240)
Q Consensus       112 ~~~l~~mk~gailIN~srg~~  132 (240)
                       +....++ ++++|++++|--
T Consensus        76 -~l~~~~~-~~~vi~~~~g~~   94 (209)
T 2raf_A           76 -QYATQLK-GKIVVDITNPLN   94 (209)
T ss_dssp             -HTHHHHT-TSEEEECCCCBC
T ss_pred             -HHHHhcC-CCEEEEECCCCC
Confidence             3444567 999999999754

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=98.98  E-value=2.6e-09  Score=98.30  Aligned_cols=109  Identities=14%  Similarity=0.179  Sum_probs=85.0

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh--------------------cCceecCCHHhhcCcCCE
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE--------------------TGAKFEEDLDTMLPKCDI   95 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~--------------------~g~~~~~~l~ell~~aDi   95 (240)
                      .-+++|||+|.||..+|..|...|++|++||+++...+...+                    -++...+++++.+++||+
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDv   87 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADA   87 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSE
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCE
Confidence            358999999999999999999999999999998765544332                    123456789899999999


Q ss_pred             EEEcCCCChh----------hhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhC
Q 026360           96 VVVNTPLTEK----------TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (240)
Q Consensus        96 Vvl~lp~~~~----------t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g  145 (240)
                      |++|+|....          .+..+ +...+.++++.++|+.|.-++-..+.+.+.+.+.
T Consensus        88 vii~Vptp~~~~~~~~Dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~  146 (446)
T 4a7p_A           88 VFIAVGTPSRRGDGHADLSYVFAAA-REIAENLTKPSVIVTKSTVPVGTGDEVERIIAEV  146 (446)
T ss_dssp             EEECCCCCBCTTTCCBCTHHHHHHH-HHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHH
T ss_pred             EEEEcCCCCccccCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHh
Confidence            9999884321          23332 4667789999999999987777778888877663

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=98.96  E-value=6.3e-10  Score=94.52  Aligned_cols=100  Identities=12%  Similarity=0.177  Sum_probs=74.3

Q ss_pred             CeEEEEccChHHHHHHHHhccCC-CEEEEEcCCCCChhHHHh-cCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKE-TGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G-~~V~~~d~~~~~~~~~~~-~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~  114 (240)
                      ++|+|||+|.||..+|..|...| ++|.+||+++...+...+ .|+....+.++++ ++|+|++++| ......++    
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~~~v~----   74 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDMEAAC----   74 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHHHHHH----
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhHHHHH----
Confidence            47999999999999999999889 999999997544444433 4777666788888 9999999999 44444333    


Q ss_pred             HccCC-CCCEEEEcCCCcccCHHHHHHHHHhC
Q 026360          115 IAKMK-KGVLIVNNARGAIMDTQAVVDACSSG  145 (240)
Q Consensus       115 l~~mk-~gailIN~srg~~vd~~aL~~aL~~g  145 (240)
                       ..++ ++.++|+++.|--  .+.+.+.+..+
T Consensus        75 -~~l~~~~~ivv~~~~g~~--~~~l~~~~~~~  103 (263)
T 1yqg_A           75 -KNIRTNGALVLSVAAGLS--VGTLSRYLGGT  103 (263)
T ss_dssp             -TTCCCTTCEEEECCTTCC--HHHHHHHTTSC
T ss_pred             -HHhccCCCEEEEecCCCC--HHHHHHHcCCC
Confidence             2332 2899999965533  36777777653

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.96  E-value=9.5e-10  Score=100.76  Aligned_cols=107  Identities=12%  Similarity=0.114  Sum_probs=80.5

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-------------------cC-ceecCCHHhhcCcCCEE
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-------------------TG-AKFEEDLDTMLPKCDIV   96 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-------------------~g-~~~~~~l~ell~~aDiV   96 (240)
                      ++|+|||+|.||..+|..|...|++|+++|+++...+...+                   .| +...+++++.+++||+|
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvv   80 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEE
Confidence            47999999999999999999999999999987543333222                   23 45556888888999999


Q ss_pred             EEcCCCChh---------hhhcccHHHHccCCC---CCEEEEcCCCcccC-HHHHHHHHHh
Q 026360           97 VVNTPLTEK---------TRGMFDKDRIAKMKK---GVLIVNNARGAIMD-TQAVVDACSS  144 (240)
Q Consensus        97 vl~lp~~~~---------t~~~i~~~~l~~mk~---gailIN~srg~~vd-~~aL~~aL~~  144 (240)
                      ++|+|....         ....+ ++..+.+++   +.++|+.|...+-. .+.+.+.+.+
T Consensus        81 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~  140 (436)
T 1mv8_A           81 FICVGTPSKKNGDLDLGYIETVC-REIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIED  140 (436)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHH-HHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHH
T ss_pred             EEEcCCCcccCCCcchHHHHHHH-HHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHH
Confidence            999985443         33332 345556788   99999998777665 6677777766

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.96  E-value=1.8e-09  Score=94.02  Aligned_cols=105  Identities=15%  Similarity=0.146  Sum_probs=75.8

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH-----------hc------------------CceecCCHH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-----------ET------------------GAKFEEDLD   87 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~-----------~~------------------g~~~~~~l~   87 (240)
                      ++|+|||.|.||..+|..+...|++|++||+++...+...           +.                  .+....+++
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~   95 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   95 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCHH
Confidence            6899999999999999999999999999999753322210           11                  233456888


Q ss_pred             hhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHH
Q 026360           88 TMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  143 (240)
Q Consensus        88 ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~  143 (240)
                      +.+++||+|++++|...+.+..+..+..+.++++++++..+.+  +....+.+.+.
T Consensus        96 ~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~--i~~~~l~~~~~  149 (302)
T 1f0y_A           96 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSS--LQITSIANATT  149 (302)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSS--SCHHHHHTTSS
T ss_pred             HhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCC--CCHHHHHHhcC
Confidence            8899999999999976554444445555678899998865544  33445655553

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.95  E-value=1.8e-09  Score=99.41  Aligned_cols=107  Identities=14%  Similarity=0.209  Sum_probs=81.7

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-------------------c-CceecCCHHhhcCcCCEE
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-------------------T-GAKFEEDLDTMLPKCDIV   96 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-------------------~-g~~~~~~l~ell~~aDiV   96 (240)
                      ++|+|||+|.||..+|..|...|++|++||+++...+...+                   . ++...+++++++++||+|
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDvV   82 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADII   82 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCEE
Confidence            68999999999999999999999999999997543332222                   1 234557889999999999


Q ss_pred             EEcCCCCh---------hhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360           97 VVNTPLTE---------KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (240)
Q Consensus        97 vl~lp~~~---------~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~  144 (240)
                      ++|+|...         .....+ ++..+.++++.++|+.|.-.+-..+.+.+.+.+
T Consensus        83 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~  138 (450)
T 3gg2_A           83 FIAVGTPAGEDGSADMSYVLDAA-RSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQE  138 (450)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEcCCCcccCCCcChHHHHHHH-HHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHH
Confidence            99998542         233332 456677899999999998666666777777665

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.95  E-value=7.1e-10  Score=97.41  Aligned_cols=111  Identities=11%  Similarity=0.062  Sum_probs=80.1

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccC-CC-EEEEEcCCCCChhHH-HhcC--ceecCCHHhhcCcCCEEEEcCCCChhhhh
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPF-NC-NLLYHDRVKMDPQLE-KETG--AKFEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~-G~-~V~~~d~~~~~~~~~-~~~g--~~~~~~l~ell~~aDiVvl~lp~~~~t~~  108 (240)
                      ...++|||||+|.||+.+++.+... |. +|.+||+++...+.+ ...+  +....+++++++++|+|++++|..   ..
T Consensus       133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~~---~~  209 (312)
T 2i99_A          133 PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLAT---EP  209 (312)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCCS---SC
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCCC---Cc
Confidence            4578999999999999999998754 77 899999976444333 3345  666779999999999999999943   45


Q ss_pred             cccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEee
Q 026360          109 MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  153 (240)
Q Consensus       109 ~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lD  153 (240)
                      ++..   ..+++|.++++++....-. ..+.+.+.+...  ..+|
T Consensus       210 v~~~---~~l~~g~~vi~~g~~~p~~-~el~~~~~~~g~--~~vD  248 (312)
T 2i99_A          210 ILFG---EWVKPGAHINAVGASRPDW-RELDDELMKEAV--LYVD  248 (312)
T ss_dssp             CBCG---GGSCTTCEEEECCCCSTTC-CSBCHHHHHHSE--EEES
T ss_pred             ccCH---HHcCCCcEEEeCCCCCCCc-eeccHHHHhcCE--EEEC
Confidence            5544   4689999999998765532 444443433222  3555

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.92  E-value=2.1e-09  Score=96.17  Aligned_cols=99  Identities=13%  Similarity=0.074  Sum_probs=75.4

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcC--------------ceecCCHHhhcCcCCEEEEcC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG--------------AKFEEDLDTMLPKCDIVVVNT  100 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g--------------~~~~~~l~ell~~aDiVvl~l  100 (240)
                      ..++|+|||.|.||..+|..|...|++|.+|++++...+...+.+              +....++++.++++|+|++++
T Consensus        28 ~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaV  107 (356)
T 3k96_A           28 FKHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVV  107 (356)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECC
T ss_pred             cCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECC
Confidence            357899999999999999999999999999999754333333322              234468889999999999999


Q ss_pred             CCChhhhhcccHHHHccCCCCCEEEEcCCCcccCH
Q 026360          101 PLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDT  135 (240)
Q Consensus       101 p~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~  135 (240)
                      |. ...+.++ ++....+++++++|+++.|-..++
T Consensus       108 p~-~~~~~vl-~~i~~~l~~~~ivvs~~kGi~~~t  140 (356)
T 3k96_A          108 PS-FAFHEVI-TRMKPLIDAKTRIAWGTKGLAKGS  140 (356)
T ss_dssp             CH-HHHHHHH-HHHGGGCCTTCEEEECCCSCBTTT
T ss_pred             CH-HHHHHHH-HHHHHhcCCCCEEEEEeCCCCcCc
Confidence            93 2334433 456667889999999988765543

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.88  E-value=7e-09  Score=91.65  Aligned_cols=105  Identities=16%  Similarity=0.189  Sum_probs=76.5

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc-Cc--------------eecCCHHhhcCcCCEEEEcCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-GA--------------KFEEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~-g~--------------~~~~~l~ell~~aDiVvl~lp  101 (240)
                      ++|+|||+|.||..+|..|...|++|.++++++...+...+. +.              ....+++++++++|+|++++|
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   84 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP   84 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeCC
Confidence            689999999999999999999999999999875443333332 21              234578888899999999999


Q ss_pred             CChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360          102 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (240)
Q Consensus       102 ~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~  144 (240)
                      ... ...++ .+....+++++++|++ .|.......+.+.+.+
T Consensus        85 ~~~-~~~~~-~~l~~~l~~~~~vv~~-~~~~~~~~~~~~~l~~  124 (359)
T 1bg6_A           85 AIH-HASIA-ANIASYISEGQLIILN-PGATGGALEFRKILRE  124 (359)
T ss_dssp             GGG-HHHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHH
T ss_pred             chH-HHHHH-HHHHHhCCCCCEEEEc-CCCchHHHHHHHHHHh
Confidence            543 34443 4566678999999998 4422344445666655

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.87  E-value=4e-09  Score=97.85  Aligned_cols=109  Identities=12%  Similarity=0.156  Sum_probs=78.5

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc--------------------CceecCCHHhhcCcCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------------------GAKFEEDLDTMLPKCD   94 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~--------------------g~~~~~~l~ell~~aD   94 (240)
                      ..++|+|||+|.||..+|..|...|++|++||+++...+...+.                    .+...+++++.+++||
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aD   86 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGD   86 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCS
T ss_pred             CCceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCC
Confidence            35799999999999999999999999999999875333322221                    1344567878889999


Q ss_pred             EEEEcCCCC---------hhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360           95 IVVVNTPLT---------EKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (240)
Q Consensus        95 iVvl~lp~~---------~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~  144 (240)
                      +|++|+|..         ...+..+ ++....+++++++|+.|.-.+=..+.+.+.+.+
T Consensus        87 vviiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~  144 (478)
T 2y0c_A           87 VQFIAVGTPPDEDGSADLQYVLAAA-RNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAE  144 (478)
T ss_dssp             EEEECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEEEeCCCcccCCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHH
Confidence            999999852         2333333 455667899999999985444445555555543

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.87  E-value=6.3e-09  Score=94.43  Aligned_cols=106  Identities=12%  Similarity=0.127  Sum_probs=79.4

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc------------------eecCCHHhhcCcCCEEEE
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA------------------KFEEDLDTMLPKCDIVVV   98 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~------------------~~~~~l~ell~~aDiVvl   98 (240)
                      ++|+|||+|.||..+|..|.. |++|+++|+++...+...+.+.                  ...+++++.++++|+|++
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvii   79 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEE
Confidence            479999999999999999999 9999999987543333332222                  334567788889999999


Q ss_pred             cCCCCh----------hhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhC
Q 026360           99 NTPLTE----------KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (240)
Q Consensus        99 ~lp~~~----------~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g  145 (240)
                      ++|...          .....+ ++... +++++++|+.+.-++-..+.+.+.+.+.
T Consensus        80 avpt~~~~~~~~~dl~~v~~v~-~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~  134 (402)
T 1dlj_A           80 ATPTNYNSRINYFDTQHVETVI-KEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD  134 (402)
T ss_dssp             CCCCCEETTTTEECCHHHHHHH-HHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS
T ss_pred             ecCCCcccCCCCccHHHHHHHH-HHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC
Confidence            999652          233333 34555 8899999998887777778888877654

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=98.87  E-value=3.6e-09  Score=92.71  Aligned_cols=105  Identities=12%  Similarity=0.047  Sum_probs=75.5

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcC--CCCChhHHHhcCc-----------eecC--CHHhhcCcCCEEEEcCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDR--VKMDPQLEKETGA-----------KFEE--DLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~--~~~~~~~~~~~g~-----------~~~~--~l~ell~~aDiVvl~lp  101 (240)
                      ++|+|||+|.||..+|..|...|++|++|++  ++...+...+.+.           ....  ++++.++++|+|++++|
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   80 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence            4799999999999999999988999999998  6533333333332           3334  67788899999999999


Q ss_pred             CChhhhhcccHHHHccCCCCCEEEEcCCCc---c-cCHHHHHHHHHh
Q 026360          102 LTEKTRGMFDKDRIAKMKKGVLIVNNARGA---I-MDTQAVVDACSS  144 (240)
Q Consensus       102 ~~~~t~~~i~~~~l~~mk~gailIN~srg~---~-vd~~aL~~aL~~  144 (240)
                      .. ....++ .+... +++++++|+++.|-   - -..+.+.+.+.+
T Consensus        81 ~~-~~~~v~-~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~  124 (335)
T 1txg_A           81 TD-GVLPVM-SRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRL  124 (335)
T ss_dssp             GG-GHHHHH-HHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTT
T ss_pred             hH-HHHHHH-HHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHH
Confidence            43 344443 34556 88899999998774   1 123456666654

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=98.86  E-value=5.9e-09  Score=88.43  Aligned_cols=99  Identities=18%  Similarity=0.344  Sum_probs=72.2

Q ss_pred             CCeEEEEccChHHHHHHHHhccCC----CEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G----~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~  111 (240)
                      .++|||||+|.||..+|..|...|    .+|.+||+++..      .|+....+.+++++++|+|++++|. .....++.
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~------~g~~~~~~~~~~~~~~D~vi~~v~~-~~~~~v~~   76 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN------TTLNYMSSNEELARHCDIIVCAVKP-DIAGSVLN   76 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS------SSSEECSCHHHHHHHCSEEEECSCT-TTHHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc------CceEEeCCHHHHHhcCCEEEEEeCH-HHHHHHHH
Confidence            468999999999999999998888    689999987644      4777677888999999999999993 44444432


Q ss_pred             HHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhC
Q 026360          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (240)
Q Consensus       112 ~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g  145 (240)
                       +....+ ++.++|....|  ++.+.+.+.+..+
T Consensus        77 -~l~~~l-~~~~vv~~~~g--i~~~~l~~~~~~~  106 (262)
T 2rcy_A           77 -NIKPYL-SSKLLISICGG--LNIGKLEEMVGSE  106 (262)
T ss_dssp             -HSGGGC-TTCEEEECCSS--CCHHHHHHHHCTT
T ss_pred             -HHHHhc-CCCEEEEECCC--CCHHHHHHHhCCC
Confidence             334445 45556655544  3345666666553

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=98.84  E-value=6e-09  Score=90.19  Aligned_cols=109  Identities=13%  Similarity=0.159  Sum_probs=76.2

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec------------CCHHhhcC---cCCEEEEcCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE------------EDLDTMLP---KCDIVVVNTP  101 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~------------~~l~ell~---~aDiVvl~lp  101 (240)
                      ++|+|||+|.||..+|..|...|++|++||+++...+...+.|....            .+.+++.+   ++|+|++++|
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~   83 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALTK   83 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEec
Confidence            58999999999999999999999999999987544444444343221            13344444   8999999999


Q ss_pred             CChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360          102 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       102 ~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      . .....++ .+....+++++++|+++.| +-..+.+.+.+.+.++.
T Consensus        84 ~-~~~~~v~-~~l~~~l~~~~~iv~~~~g-~~~~~~l~~~~~~~~vi  127 (316)
T 2ew2_A           84 A-QQLDAMF-KAIQPMITEKTYVLCLLNG-LGHEDVLEKYVPKENIL  127 (316)
T ss_dssp             H-HHHHHHH-HHHGGGCCTTCEEEECCSS-SCTHHHHTTTSCGGGEE
T ss_pred             c-ccHHHHH-HHHHHhcCCCCEEEEecCC-CCcHHHHHHHcCCccEE
Confidence            3 3444443 3555678899999999865 33446666666554443

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.84  E-value=4.1e-09  Score=97.87  Aligned_cols=116  Identities=14%  Similarity=0.113  Sum_probs=82.7

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-----------cC-------------ceecCCHHhhcC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------TG-------------AKFEEDLDTMLP   91 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~~~l~ell~   91 (240)
                      -++|||||.|.||..+|..+...|++|++||+++...+...+           .|             +....+++ .++
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~   83 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-ALA   83 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-Hhc
Confidence            468999999999999999999999999999997643333221           12             23345665 588


Q ss_pred             cCCEEEEcCCCChhhhhcccHHHHccCCCCCEE-EEcCCCcccCHHHHHHHHHhCCccEEEeeCCC
Q 026360           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLI-VNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (240)
Q Consensus        92 ~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gail-IN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~  156 (240)
                      +||+|+.++|...+.+..+-.+..+.+++++++ .|+|.-+   ...+.+.+.. .-...++..|.
T Consensus        84 ~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~---i~~ia~~~~~-p~~~ig~hf~~  145 (483)
T 3mog_A           84 AADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSIS---ITAIAAEIKN-PERVAGLHFFN  145 (483)
T ss_dssp             GCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSC---HHHHTTTSSS-GGGEEEEEECS
T ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCC---HHHHHHHccC-ccceEEeeecC
Confidence            999999999977666655556677789999999 4666543   3556555542 33456666554

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=98.83  E-value=5.1e-09  Score=86.05  Aligned_cols=116  Identities=18%  Similarity=0.225  Sum_probs=80.6

Q ss_pred             CeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-cC-------ceecCCHHhhcCcCCEEEEcCCCChhhh
Q 026360           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TG-------AKFEEDLDTMLPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        37 ~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-~g-------~~~~~~l~ell~~aDiVvl~lp~~~~t~  107 (240)
                      ++|+|+| .|.||+.+++.|...|++|.++++++...+...+ .+       +. ..+++++++++|+|++++|. ....
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~Vi~~~~~-~~~~   78 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAEACDIAVLTIPW-EHAI   78 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHHHCSEEEECSCH-HHHH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCC-hhhHHHHHhcCCEEEEeCCh-hhHH
Confidence            4799999 9999999999999999999999987533322221 12       33 34788888999999999993 3334


Q ss_pred             hcccHHHHccCCCCCEEEEcCCCcccC------------HHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360          108 GMFDKDRIAKMKKGVLIVNNARGAIMD------------TQAVVDACSSGHIAGYSGDVWNPQPA  160 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~srg~~vd------------~~aL~~aL~~g~i~ga~lDV~~~EP~  160 (240)
                      .++. +....++ +.++|+++.|--.+            .+.+.+.+..    ...++++.+.|.
T Consensus        79 ~~~~-~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~----~~~v~~~~~~~~  137 (212)
T 1jay_A           79 DTAR-DLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES----EKVVSALHTIPA  137 (212)
T ss_dssp             HHHH-HTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC----SCEEECCTTCCH
T ss_pred             HHHH-HHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC----CeEEEEccchHH
Confidence            3332 2333344 89999999875532            5677777753    235677766653

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=98.83  E-value=8.6e-09  Score=90.94  Aligned_cols=88  Identities=22%  Similarity=0.327  Sum_probs=68.0

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcC-----------ceecCCHHhhcCcCCEEEEcCCCCh
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG-----------AKFEEDLDTMLPKCDIVVVNTPLTE  104 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g-----------~~~~~~l~ell~~aDiVvl~lp~~~  104 (240)
                      .++|+|||+|.||..+|..|...|++|.+|++++...+...+.|           +....++++ ++.+|+|++++|. .
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk~-~   91 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIPV-Q   91 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSCG-G
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECCH-H
Confidence            57899999999999999999999999999999754444444333           355567888 8999999999993 4


Q ss_pred             hhhhcccHHHHccCC-CCCEEEEcCCC
Q 026360          105 KTRGMFDKDRIAKMK-KGVLIVNNARG  130 (240)
Q Consensus       105 ~t~~~i~~~~l~~mk-~gailIN~srg  130 (240)
                      .+..++     ..++ ++.++|+++.|
T Consensus        92 ~~~~v~-----~~l~~~~~~vv~~~nG  113 (335)
T 1z82_A           92 YIREHL-----LRLPVKPSMVLNLSKG  113 (335)
T ss_dssp             GHHHHH-----TTCSSCCSEEEECCCC
T ss_pred             HHHHHH-----HHhCcCCCEEEEEeCC
Confidence            444433     3344 78999999977

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=98.82  E-value=6.7e-09  Score=91.93  Aligned_cols=95  Identities=13%  Similarity=0.081  Sum_probs=71.3

Q ss_pred             CCeEEEEccChHHHHHHHHhccCC-------CEEEEEcCCCC-----ChhHHHhc--------------CceecCCHHhh
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFN-------CNLLYHDRVKM-----DPQLEKET--------------GAKFEEDLDTM   89 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G-------~~V~~~d~~~~-----~~~~~~~~--------------g~~~~~~l~el   89 (240)
                      .++|+|||+|.||..+|..|...|       ++|.+|++++.     ..+.....              ++....+++++
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQA   87 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHH
Confidence            468999999999999999998888       89999998764     23322221              23344678888


Q ss_pred             cCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcc
Q 026360           90 LPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI  132 (240)
Q Consensus        90 l~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~  132 (240)
                      ++++|+|++++|. .....++ .+....+++++++|+++.|-.
T Consensus        88 ~~~aD~Vilav~~-~~~~~v~-~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           88 AEDADILIFVVPH-QFIGKIC-DQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             HTTCSEEEECCCG-GGHHHHH-HHHTTCSCTTCEEEECCCCBC
T ss_pred             HcCCCEEEEeCCH-HHHHHHH-HHHHhhCCCCCEEEEECCccC
Confidence            9999999999994 3344443 345566889999999988754

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=98.82  E-value=6.5e-09  Score=93.15  Aligned_cols=93  Identities=10%  Similarity=0.154  Sum_probs=70.1

Q ss_pred             CeEEEEccChHHHHHHHHhccCC-------CEEEEEcCCCC-----ChhHHHhc--------------CceecCCHHhhc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFN-------CNLLYHDRVKM-----DPQLEKET--------------GAKFEEDLDTML   90 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G-------~~V~~~d~~~~-----~~~~~~~~--------------g~~~~~~l~ell   90 (240)
                      ++|+|||.|.||..+|..|...|       .+|++|++++.     ..+.....              ++....++++++
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea~  101 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASVI  101 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHHH
Confidence            57999999999999999998888       89999998764     33332221              234456788889


Q ss_pred             CcCCEEEEcCCCChhhhhcccHHHHc----cCCCCCEEEEcCCCc
Q 026360           91 PKCDIVVVNTPLTEKTRGMFDKDRIA----KMKKGVLIVNNARGA  131 (240)
Q Consensus        91 ~~aDiVvl~lp~~~~t~~~i~~~~l~----~mk~gailIN~srg~  131 (240)
                      +++|+|++++|. .....++ .+...    .+++++++|+++.|-
T Consensus       102 ~~aDvVilav~~-~~~~~vl-~~i~~~~~~~l~~~~ivvs~~~Gi  144 (375)
T 1yj8_A          102 NDADLLIFIVPC-QYLESVL-ASIKESESIKIASHAKAISLTKGF  144 (375)
T ss_dssp             TTCSEEEECCCH-HHHHHHH-HHHTC---CCCCTTCEEEECCCSC
T ss_pred             cCCCEEEEcCCH-HHHHHHH-HHHhhhhhccCCCCCEEEEeCCcc
Confidence            999999999993 4444443 24445    688899999998873

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=98.81  E-value=2.3e-09  Score=95.56  Aligned_cols=95  Identities=21%  Similarity=0.283  Sum_probs=70.6

Q ss_pred             eEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc--------------CceecCCHHhhcCcCCEEEEcCCCC
Q 026360           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------------GAKFEEDLDTMLPKCDIVVVNTPLT  103 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~--------------g~~~~~~l~ell~~aDiVvl~lp~~  103 (240)
                      +|+|||+|.||..+|..|...|++|.+||+++...+...+.              ++....+++++++++|+|++++|. 
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~-   95 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT-   95 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCH-
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCCh-
Confidence            89999999999999999999999999999875333333322              234446788889999999999993 


Q ss_pred             hhhhhcccHH---HHccCCC-CCEEEEcCCCccc
Q 026360          104 EKTRGMFDKD---RIAKMKK-GVLIVNNARGAIM  133 (240)
Q Consensus       104 ~~t~~~i~~~---~l~~mk~-gailIN~srg~~v  133 (240)
                      .....++...   ....+++ ++++|+++.|-..
T Consensus        96 ~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~  129 (366)
T 1evy_A           96 QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIER  129 (366)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCT
T ss_pred             HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCC
Confidence            4444444320   4455678 8999999877433

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.79  E-value=4.4e-09  Score=87.57  Aligned_cols=92  Identities=16%  Similarity=0.261  Sum_probs=65.7

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEE-EcCCCCChhH-HHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHH
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLY-HDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  113 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~-~d~~~~~~~~-~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~  113 (240)
                      -++|+|||+|.||..+|+.|...|++|.+ +|+++...+. ....|.....+..+.++++|+|++++|. .....++. +
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~-~~~~~v~~-~  100 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPY-DSIADIVT-Q  100 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCG-GGHHHHHT-T
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCCh-HHHHHHHH-H
Confidence            46899999999999999999999999998 9987655444 3345654444555668999999999993 22222221 1


Q ss_pred             HHccCCCCCEEEEcCCCc
Q 026360          114 RIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       114 ~l~~mk~gailIN~srg~  131 (240)
                       +.. .++.++|+++.|-
T Consensus       101 -l~~-~~~~ivi~~~~g~  116 (220)
T 4huj_A          101 -VSD-WGGQIVVDASNAI  116 (220)
T ss_dssp             -CSC-CTTCEEEECCCCB
T ss_pred             -hhc-cCCCEEEEcCCCC
Confidence             122 3578999998664

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.76  E-value=1.5e-08  Score=94.02  Aligned_cols=105  Identities=15%  Similarity=0.148  Sum_probs=78.1

Q ss_pred             CCeEEEEccChHHHHHHHHhccC-CC-EEEEEcCCCC----ChhHHHh---------------------cC-ceecCCHH
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPF-NC-NLLYHDRVKM----DPQLEKE---------------------TG-AKFEEDLD   87 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~-G~-~V~~~d~~~~----~~~~~~~---------------------~g-~~~~~~l~   87 (240)
                      -++|+|||+|.||..+|..|... |+ +|++||+++.    ..+...+                     .| ....++ .
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd-~   96 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD-F   96 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC-G
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc-H
Confidence            46899999999999999999999 99 9999999875    2222211                     12 233345 6


Q ss_pred             hhcCcCCEEEEcCCCCh--------hhhhcc--cHHHHccCCCCCEEEEcCCCcccCHHHHHHH
Q 026360           88 TMLPKCDIVVVNTPLTE--------KTRGMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDA  141 (240)
Q Consensus        88 ell~~aDiVvl~lp~~~--------~t~~~i--~~~~l~~mk~gailIN~srg~~vd~~aL~~a  141 (240)
                      +.+++||+|++++|...        +...+.  .+...+.+++|.++|+.|.-++-..+.+.+.
T Consensus        97 ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~  160 (478)
T 3g79_A           97 SRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQ  160 (478)
T ss_dssp             GGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHH
T ss_pred             HHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHH
Confidence            78899999999998542        222222  2456777999999999998888777777763

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.75  E-value=2.6e-08  Score=77.41  Aligned_cols=103  Identities=13%  Similarity=0.192  Sum_probs=79.2

Q ss_pred             cCCCeEEEEcc----ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           34 LEGKTVGTVGC----GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        34 l~g~~vgIIG~----G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      ++-++|+|||.    |.+|..+++.|...|++|+.++++..  +.   .|...+.+++|+.+..|++++++| .+....+
T Consensus        12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~--~i---~G~~~~~s~~el~~~vDlvii~vp-~~~v~~v   85 (138)
T 1y81_A           12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYD--EI---EGLKCYRSVRELPKDVDVIVFVVP-PKVGLQV   85 (138)
T ss_dssp             --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCS--EE---TTEECBSSGGGSCTTCCEEEECSC-HHHHHHH
T ss_pred             cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCC--eE---CCeeecCCHHHhCCCCCEEEEEeC-HHHHHHH
Confidence            45789999999    99999999999999999888887542  11   477777799999999999999999 4555555


Q ss_pred             ccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360          110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      +. +..+ ...++++++.+.    ..+++.+.+++..+.
T Consensus        86 ~~-~~~~-~g~~~i~~~~~~----~~~~l~~~a~~~Gi~  118 (138)
T 1y81_A           86 AK-EAVE-AGFKKLWFQPGA----ESEEIRRFLEKAGVE  118 (138)
T ss_dssp             HH-HHHH-TTCCEEEECTTS----CCHHHHHHHHHHTCE
T ss_pred             HH-HHHH-cCCCEEEEcCcc----HHHHHHHHHHHCCCE
Confidence            53 3444 666778877754    267888888887776

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.75  E-value=1e-08  Score=91.73  Aligned_cols=97  Identities=12%  Similarity=0.152  Sum_probs=74.2

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCcCCEEEEcCCCCh-
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTPLTE-  104 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~ell~~aDiVvl~lp~~~-  104 (240)
                      .+.++++.|+|.|.+|+.+++.++.+|++|+++|+++...+.+.+.+...       ..++.+.+..+|+|+.+++... 
T Consensus       164 ~l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~  243 (361)
T 1pjc_A          164 GVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGR  243 (361)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEECCCcCCC
Confidence            47789999999999999999999999999999999764444444333211       1245566778999999987432 


Q ss_pred             hhhhcccHHHHccCCCCCEEEEcCC
Q 026360          105 KTRGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       105 ~t~~~i~~~~l~~mk~gailIN~sr  129 (240)
                      .+..++.++.++.|+++++++|++-
T Consensus       244 ~~~~li~~~~~~~~~~g~~ivdv~~  268 (361)
T 1pjc_A          244 RAPILVPASLVEQMRTGSVIVDVAV  268 (361)
T ss_dssp             SCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             CCCeecCHHHHhhCCCCCEEEEEec
Confidence            1334567788999999999999983

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.73  E-value=1.1e-08  Score=94.87  Aligned_cols=107  Identities=10%  Similarity=0.115  Sum_probs=79.0

Q ss_pred             CeEEEEccChHHHHHHHHhccC--CCEEEEEcCCCCChhHHHh-------------------cCceecCCHHhhcCcCCE
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPF--NCNLLYHDRVKMDPQLEKE-------------------TGAKFEEDLDTMLPKCDI   95 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~--G~~V~~~d~~~~~~~~~~~-------------------~g~~~~~~l~ell~~aDi   95 (240)
                      ++|+|||+|.||..+|..|...  |++|++||+++...+...+                   .+....+++++.+++||+
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aDv   89 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADL   89 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCCE
Confidence            6899999999999999999876  7999999986533222211                   123445577788899999


Q ss_pred             EEEcCCCChh--------------hhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360           96 VVVNTPLTEK--------------TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (240)
Q Consensus        96 Vvl~lp~~~~--------------t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~  144 (240)
                      |++|+|....              .... .+...+.++++.++|+.|.-.+-..+.+.+.+.+
T Consensus        90 vii~Vptp~~~~g~~~~~~~dl~~v~~~-~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~  151 (481)
T 2o3j_A           90 IFISVNTPTKMYGRGKGMAPDLKYVESV-SRTIAQYAGGPKIVVEKSTVPVKAAESIGCILRE  151 (481)
T ss_dssp             EEECCCCCBCCSSTTTTTSBCCHHHHHH-HHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEecCCccccccccccCCCcHHHHHHH-HHHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHH
Confidence            9999985321              2222 2355667899999999987776667778888876

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=98.72  E-value=5.5e-08  Score=94.36  Aligned_cols=117  Identities=12%  Similarity=0.107  Sum_probs=81.3

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHH-----------HhcC-------------ceecCCHHhhcC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-----------KETG-------------AKFEEDLDTMLP   91 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~l~ell~   91 (240)
                      =++|||||.|.||..+|..+...|++|++||+++...+..           .+.|             +....++ +.++
T Consensus       314 i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~  392 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFG  392 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGG
T ss_pred             CCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHC
Confidence            3589999999999999999999999999999975332221           1122             2334466 6788


Q ss_pred             cCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCC
Q 026360           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (240)
Q Consensus        92 ~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~  156 (240)
                      +||+|+.++|...+.+..+..+..+.+++++++++.+.+  +....+.+.+.. .-...++..|.
T Consensus       393 ~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntSt--l~i~~la~~~~~-~~~~ig~hf~~  454 (715)
T 1wdk_A          393 NVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST--ISISLLAKALKR-PENFVGMHFFN  454 (715)
T ss_dssp             GCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS--SCHHHHGGGCSC-GGGEEEEECCS
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCC--CCHHHHHHHhcC-ccceEEEEccC
Confidence            999999999987766665556677789999999754433  334456555532 22345666444

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=98.71  E-value=1.7e-08  Score=86.34  Aligned_cols=91  Identities=19%  Similarity=0.217  Sum_probs=66.5

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc---Cc----e-ecCCHHhhcCcCCEEEEcCCCChhhhh
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET---GA----K-FEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~---g~----~-~~~~l~ell~~aDiVvl~lp~~~~t~~  108 (240)
                      ++|+|||+|.||..+|..|...|++|++|++++...+.....   +.    . ..++ .+.++++|+|++++|.. .+..
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~d~vi~~v~~~-~~~~   78 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTAND-PDFLATSDLLLVTLKAW-QVSD   78 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESC-HHHHHTCSEEEECSCGG-GHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecC-ccccCCCCEEEEEecHH-hHHH
Confidence            479999999999999999999999999999876443322211   11    0 1233 45678899999999954 3444


Q ss_pred             cccHHHHccCCCCCEEEEcCCC
Q 026360          109 MFDKDRIAKMKKGVLIVNNARG  130 (240)
Q Consensus       109 ~i~~~~l~~mk~gailIN~srg  130 (240)
                      ++ ++....+++++++|++..|
T Consensus        79 v~-~~l~~~l~~~~~vv~~~~g   99 (291)
T 1ks9_A           79 AV-KSLASTLPVTTPILLIHNG   99 (291)
T ss_dssp             HH-HHHHTTSCTTSCEEEECSS
T ss_pred             HH-HHHHhhCCCCCEEEEecCC
Confidence            44 3566678899999998765

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=98.71  E-value=5.7e-08  Score=81.58  Aligned_cols=99  Identities=21%  Similarity=0.286  Sum_probs=74.3

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEE-EEEcCCCCChhHHHhcCceecCCHHhhc-CcCCEEEEcCCCChhhhhcccHHH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNL-LYHDRVKMDPQLEKETGAKFEEDLDTML-PKCDIVVVNTPLTEKTRGMFDKDR  114 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V-~~~d~~~~~~~~~~~~g~~~~~~l~ell-~~aDiVvl~lp~~~~t~~~i~~~~  114 (240)
                      ++|||||+|.||+.+++.+...|+++ .++|++.. .+.       .+.++++++ .++|+|++++|.....     +..
T Consensus         1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~-~~~-------~~~~~~~l~~~~~DvVv~~~~~~~~~-----~~~   67 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGE-HEK-------MVRGIDEFLQREMDVAVEAASQQAVK-----DYA   67 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-CTT-------EESSHHHHTTSCCSEEEECSCHHHHH-----HHH
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcc-hhh-------hcCCHHHHhcCCCCEEEECCCHHHHH-----HHH
Confidence            47999999999999999998889997 68888642 211       356899999 6999999999933211     122


Q ss_pred             HccCCCCCEEEEcCCCcccCH---HHHHHHHHhCCcc
Q 026360          115 IAKMKKGVLIVNNARGAIMDT---QAVVDACSSGHIA  148 (240)
Q Consensus       115 l~~mk~gailIN~srg~~vd~---~aL~~aL~~g~i~  148 (240)
                      ...++.|..+|+.+.+..-+.   +.|.++.++.+..
T Consensus        68 ~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~  104 (236)
T 2dc1_A           68 EKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGRR  104 (236)
T ss_dssp             HHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHCCCcEEEECcccCChHHHHHHHHHHHHhcCCe
Confidence            345678999999998887666   6777777765444

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=98.70  E-value=4.1e-08  Score=89.28  Aligned_cols=95  Identities=24%  Similarity=0.351  Sum_probs=75.5

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCC------CChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhh
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK------MDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKT  106 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~------~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t  106 (240)
                      -|+||+|+|||||+-|++-|..|+..|.+|++--|..      .+...+.+.|+... +.+|++++||+|++.+|+..+ 
T Consensus        34 ~lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v~-~~~eA~~~ADvV~~L~PD~~q-  111 (491)
T 3ulk_A           34 YLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVG-TYEELIPQADLVINLTPDKQH-  111 (491)
T ss_dssp             GGTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEEE-EHHHHGGGCSEEEECSCGGGH-
T ss_pred             HHcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEec-CHHHHHHhCCEEEEeCChhhH-
Confidence            4899999999999999999999999999987765521      22345566788765 899999999999999996433 


Q ss_pred             hhcccHHHHccCCCCCEEEEcCCCc
Q 026360          107 RGMFDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       107 ~~~i~~~~l~~mk~gailIN~srg~  131 (240)
                      ..++ ++....||+|+.+. .|.|-
T Consensus       112 ~~vy-~~I~p~lk~G~~L~-faHGF  134 (491)
T 3ulk_A          112 SDVV-RTVQPLMKDGAALG-YSHGF  134 (491)
T ss_dssp             HHHH-HHHGGGSCTTCEEE-ESSCH
T ss_pred             HHHH-HHHHhhCCCCCEEE-ecCcc
Confidence            3334 46899999999886 56664

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=98.70  E-value=4.3e-08  Score=84.42  Aligned_cols=94  Identities=17%  Similarity=0.134  Sum_probs=68.9

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHH
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  115 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l  115 (240)
                      |+++.|+|.|.+|++++..|...|.+|++++|+..+.+...+.++... +++++ .++|+||.++|........+..+.+
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~-~~~~l-~~~DiVInaTp~Gm~~~~~l~~~~l  195 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCF-MEPPK-SAFDLIINATSASLHNELPLNKEVL  195 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEE-SSCCS-SCCSEEEECCTTCCCCSCSSCHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEe-cHHHh-ccCCEEEEcccCCCCCCCCCChHHH
Confidence            899999999999999999999999999999998766554435565543 44554 3899999999965322223444422


Q ss_pred             c-cCCCCCEEEEcCCCc
Q 026360          116 A-KMKKGVLIVNNARGA  131 (240)
Q Consensus       116 ~-~mk~gailIN~srg~  131 (240)
                      . .++++.+++|+...+
T Consensus       196 ~~~l~~~~~v~D~vY~P  212 (269)
T 3phh_A          196 KGYFKEGKLAYDLAYGF  212 (269)
T ss_dssp             HHHHHHCSEEEESCCSS
T ss_pred             HhhCCCCCEEEEeCCCC
Confidence            2 456778888887665

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.65  E-value=1.4e-07  Score=91.54  Aligned_cols=116  Identities=14%  Similarity=0.103  Sum_probs=78.9

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-----------cC-------------ceecCCHHhhcCc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------TG-------------AKFEEDLDTMLPK   92 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~~~l~ell~~   92 (240)
                      ++|||||.|.||..+|..+...|++|++||+++...+....           .|             +....++ +.+++
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~  391 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFRD  391 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGTT
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHCC
Confidence            68999999999999999999999999999997533222110           12             2334466 56899


Q ss_pred             CCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCC
Q 026360           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (240)
Q Consensus        93 aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~  156 (240)
                      ||+|+.++|...+.+..+..+..+.+++++++++.+.+  +....+.+.++. .-...+++.|.
T Consensus       392 aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntSt--l~i~~la~~~~~-p~~~iG~hf~~  452 (725)
T 2wtb_A          392 VDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTST--IDLNKIGERTKS-QDRIVGAHFFS  452 (725)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHTTTCSC-TTTEEEEEECS
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHHhcC-CCCEEEecCCC
Confidence            99999999977666555556677779999998654433  333455555432 22335666444

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=98.65  E-value=5.5e-08  Score=89.05  Aligned_cols=111  Identities=16%  Similarity=0.148  Sum_probs=77.0

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCce-ecCCHHhh---------------cCcCCEEE
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-FEEDLDTM---------------LPKCDIVV   97 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-~~~~l~el---------------l~~aDiVv   97 (240)
                      -.|.++.|||+|.||..+|..|...|++|++||+++...+...+-... +...++++               +++||+|+
T Consensus         9 ~~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvvi   88 (431)
T 3ojo_A            9 HHGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFI   88 (431)
T ss_dssp             ---CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEEE
T ss_pred             ccCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEEE
Confidence            468999999999999999999999999999999976444333321110 11112221               46899999


Q ss_pred             EcCCCChhh--------hhcc--cHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360           98 VNTPLTEKT--------RGMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (240)
Q Consensus        98 l~lp~~~~t--------~~~i--~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~  144 (240)
                      +|+|.....        ..+.  .+...+.+++|.++|+.|.-++-..+.+.+.+.+
T Consensus        89 i~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e  145 (431)
T 3ojo_A           89 IAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIE  145 (431)
T ss_dssp             ECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHH
T ss_pred             EEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHHH
Confidence            999954321        1222  2456777999999999998888888888776533

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.63  E-value=2.9e-08  Score=79.77  Aligned_cols=95  Identities=16%  Similarity=0.173  Sum_probs=68.4

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccC-CCEEEEEcCCCCChhHHHhcCceec----CC---HHhh--cCcCCEEEEcCC
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETGAKFE----ED---LDTM--LPKCDIVVVNTP  101 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~-G~~V~~~d~~~~~~~~~~~~g~~~~----~~---l~el--l~~aDiVvl~lp  101 (240)
                      .++.+++|+|+|+|.+|+.+|+.|+.. |++|+++|+++...+.+.+.|+...    .+   ++++  +.++|+|++++|
T Consensus        35 ~~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~  114 (183)
T 3c85_A           35 INPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMP  114 (183)
T ss_dssp             BCCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCS
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCC
Confidence            357788999999999999999999998 9999999987654455555565422    22   3344  678999999999


Q ss_pred             CChhhhhcccHHHHccCCCCCEEEEcC
Q 026360          102 LTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       102 ~~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      ..+.+..++  ..++.+.+...+|..+
T Consensus       115 ~~~~~~~~~--~~~~~~~~~~~ii~~~  139 (183)
T 3c85_A          115 HHQGNQTAL--EQLQRRNYKGQIAAIA  139 (183)
T ss_dssp             SHHHHHHHH--HHHHHTTCCSEEEEEE
T ss_pred             ChHHHHHHH--HHHHHHCCCCEEEEEE
Confidence            655444333  3455667666666544

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.62  E-value=3.7e-08  Score=77.06  Aligned_cols=104  Identities=16%  Similarity=0.142  Sum_probs=78.7

Q ss_pred             CCeEEEEcc----ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360           36 GKTVGTVGC----GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        36 g~~vgIIG~----G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~  111 (240)
                      -++|+|||+    |.+|..+++.|...|++|+.+|+...-.+   -.|...+.+++++.+..|++++++| .+....++.
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~---i~G~~~~~sl~el~~~~Dlvii~vp-~~~v~~v~~   88 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKT---LLGQQGYATLADVPEKVDMVDVFRN-SEAAWGVAQ   88 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSE---ETTEECCSSTTTCSSCCSEEECCSC-STHHHHHHH
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcccccc---cCCeeccCCHHHcCCCCCEEEEEeC-HHHHHHHHH
Confidence            678999999    89999999999999999888887541011   1477777789999899999999999 455566553


Q ss_pred             HHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccE
Q 026360          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAG  149 (240)
Q Consensus       112 ~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~g  149 (240)
                       +..+ ...+.++++.+.  .  ++++.+++++..+..
T Consensus        89 -~~~~-~g~~~i~i~~~~--~--~~~l~~~a~~~Gi~~  120 (145)
T 2duw_A           89 -EAIA-IGAKTLWLQLGV--I--NEQAAVLAREAGLSV  120 (145)
T ss_dssp             -HHHH-HTCCEEECCTTC--C--CHHHHHHHHTTTCEE
T ss_pred             -HHHH-cCCCEEEEcCCh--H--HHHHHHHHHHcCCEE
Confidence             3333 566778877642  2  788889998887773

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.62  E-value=1.1e-07  Score=82.84  Aligned_cols=112  Identities=15%  Similarity=0.253  Sum_probs=77.4

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChh-HHHhcCc---eec--CCHHhhcCcCCEEEEcCCCCh
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-LEKETGA---KFE--EDLDTMLPKCDIVVVNTPLTE  104 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~-~~~~~g~---~~~--~~l~ell~~aDiVvl~lp~~~  104 (240)
                      .++.|++++|+|.|.+|+.++..|...|+ +|++++|+..+.+ .+...+.   ...  +++.+.+.++|+|+.++|...
T Consensus       137 ~~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~  216 (297)
T 2egg_A          137 ITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGM  216 (297)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTC
T ss_pred             CCCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCC
Confidence            35789999999999999999999999998 8999999753332 2333332   221  245677889999999999653


Q ss_pred             hhh--h-cccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360          105 KTR--G-MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       105 ~t~--~-~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      ...  . .+.   .+.++++.+++|++-.+...  .|.++.++.++.
T Consensus       217 ~~~~~~~~i~---~~~l~~~~~v~D~~y~P~~T--~ll~~A~~~G~~  258 (297)
T 2egg_A          217 HPRVEVQPLS---LERLRPGVIVSDIIYNPLET--KWLKEAKARGAR  258 (297)
T ss_dssp             SSCCSCCSSC---CTTCCTTCEEEECCCSSSSC--HHHHHHHHTTCE
T ss_pred             CCCCCCCCCC---HHHcCCCCEEEEcCCCCCCC--HHHHHHHHCcCE
Confidence            211  1 122   24578899999998754333  366666654443

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.62  E-value=8.6e-08  Score=88.50  Aligned_cols=116  Identities=13%  Similarity=0.178  Sum_probs=78.9

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-----------cC-----------ceecCCHHhhcCcC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------TG-----------AKFEEDLDTMLPKC   93 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-----------~g-----------~~~~~~l~ell~~a   93 (240)
                      -++|+|||+|.||..+|..+...|++|+++|+++...+....           .|           .....++ +.+++|
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~a  115 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTV  115 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCC
Confidence            468999999999999999999999999999987533222111           01           1223466 568899


Q ss_pred             CEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCC
Q 026360           94 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (240)
Q Consensus        94 DiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~  155 (240)
                      |+|+.++|...+.+..+-.+....++++++|++...+  +....+.+.+.. .-..+++..|
T Consensus       116 DlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~--~~~~~la~~~~~-~~~~ig~hf~  174 (463)
T 1zcj_A          116 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA--LNVDDIASSTDR-PQLVIGTHFF  174 (463)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHTTSSC-GGGEEEEEEC
T ss_pred             CEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCC--cCHHHHHHHhcC-CcceEEeecC
Confidence            9999999976555554545666678999999873333  334466665542 2233556655

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=98.60  E-value=1.9e-08  Score=86.40  Aligned_cols=86  Identities=16%  Similarity=0.136  Sum_probs=57.7

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEE-EEEcCCCCChhHH-HhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNL-LYHDRVKMDPQLE-KETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V-~~~d~~~~~~~~~-~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~  114 (240)
                      ++|||||+|.||..+++.|... ++| .+||+++...+.. ...|. ...+++++++++|+|++++|... .     .+.
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~DvVilav~~~~-~-----~~v   74 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG-KAATLEKHPELNGVVFVIVPDRY-I-----KTV   74 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-CCCSSCCCCC---CEEECSCTTT-H-----HHH
T ss_pred             ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC-ccCCHHHHHhcCCEEEEeCChHH-H-----HHH
Confidence            4799999999999999999887 888 5899875433333 23465 55678888899999999999542 2     233


Q ss_pred             HccC-CCCCEEEEcCCC
Q 026360          115 IAKM-KKGVLIVNNARG  130 (240)
Q Consensus       115 l~~m-k~gailIN~srg  130 (240)
                      +..+ +++.++||++.+
T Consensus        75 ~~~l~~~~~ivi~~s~~   91 (276)
T 2i76_A           75 ANHLNLGDAVLVHCSGF   91 (276)
T ss_dssp             HTTTCCSSCCEEECCSS
T ss_pred             HHHhccCCCEEEECCCC
Confidence            3334 688999999855

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=98.59  E-value=4.3e-08  Score=84.76  Aligned_cols=109  Identities=14%  Similarity=0.130  Sum_probs=72.9

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHh-cCceecCCHHhhcCcCCEEEEcCCCC--hhhh
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKE-TGAKFEEDLDTMLPKCDIVVVNTPLT--EKTR  107 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~-~g~~~~~~l~ell~~aDiVvl~lp~~--~~t~  107 (240)
                      .++.|+++.|+|.|.+|++++..|...|+ +|++++|+..+.+.... ......+++++.++++|+||.++|..  +...
T Consensus       113 ~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~  192 (277)
T 3don_A          113 EGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNTD  192 (277)
T ss_dssp             TTGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------C
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCCc
Confidence            46789999999999999999999999999 89999997643322211 11112335667788999999999964  2222


Q ss_pred             hcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhC
Q 026360          108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g  145 (240)
                      ..+.   .+.++++.+++|+.-.+.. + .+.++.++.
T Consensus       193 ~~l~---~~~l~~~~~V~D~vY~P~~-T-~ll~~A~~~  225 (277)
T 3don_A          193 SVIS---LNRLASHTLVSDIVYNPYK-T-PILIEAEQR  225 (277)
T ss_dssp             CSSC---CTTCCSSCEEEESCCSSSS-C-HHHHHHHHT
T ss_pred             CCCC---HHHcCCCCEEEEecCCCCC-C-HHHHHHHHC
Confidence            2232   3457889999999866433 2 355444443

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=98.59  E-value=6.7e-08  Score=82.50  Aligned_cols=106  Identities=19%  Similarity=0.170  Sum_probs=75.1

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHH-HhcCceecCCHHhhcCcCCEEEEcCCCChhh-hhc
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLE-KETGAKFEEDLDTMLPKCDIVVVNTPLTEKT-RGM  109 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~-~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t-~~~  109 (240)
                      .+.| +++|||.|.+|++++..|...|. +|++++|++.+.+.. ...+....+++++.++++|+|+.++|..-.. ...
T Consensus       106 ~~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~~~~  184 (253)
T 3u62_A          106 EVKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGEELP  184 (253)
T ss_dssp             CCCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSCCCS
T ss_pred             CCCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCCCCC
Confidence            4678 99999999999999999999998 899999975322211 1122223456778889999999999854211 123


Q ss_pred             ccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhC
Q 026360          110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g  145 (240)
                      +..+.   ++++.+++++.-+   .+.-+.++.+.|
T Consensus       185 i~~~~---l~~~~~V~Divy~---~T~ll~~A~~~G  214 (253)
T 3u62_A          185 VSDDS---LKNLSLVYDVIYF---DTPLVVKARKLG  214 (253)
T ss_dssp             CCHHH---HTTCSEEEECSSS---CCHHHHHHHHHT
T ss_pred             CCHHH---hCcCCEEEEeeCC---CcHHHHHHHHCC
Confidence            44433   5789999999988   555555665554

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=98.57  E-value=2.6e-08  Score=86.45  Aligned_cols=106  Identities=10%  Similarity=0.049  Sum_probs=73.1

Q ss_pred             CeEEEEccChHHHHHHHHhccC-----C-CEEEEEcCCCCChhHHHh-cCceecC-------------CHHhhcCcCCEE
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPF-----N-CNLLYHDRVKMDPQLEKE-TGAKFEE-------------DLDTMLPKCDIV   96 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~-----G-~~V~~~d~~~~~~~~~~~-~g~~~~~-------------~l~ell~~aDiV   96 (240)
                      ++|+|||+|.||..+|..|...     | ++|++|++ +...+...+ .|+....             +..+.++.+|+|
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v   87 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDYI   87 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCCEE
Confidence            5899999999999999999988     9 99999998 433444444 4554321             233457899999


Q ss_pred             EEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCC
Q 026360           97 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH  146 (240)
Q Consensus        97 vl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~  146 (240)
                      ++++|... ...++ .+....+++++++|++..| +-.++.+.+.+.+.+
T Consensus        88 il~vk~~~-~~~v~-~~i~~~l~~~~~iv~~~nG-~~~~~~l~~~l~~~~  134 (317)
T 2qyt_A           88 LFCTKDYD-MERGV-AEIRPMIGQNTKILPLLNG-ADIAERMRTYLPDTV  134 (317)
T ss_dssp             EECCSSSC-HHHHH-HHHGGGEEEEEEEEECSCS-SSHHHHHTTTSCTTT
T ss_pred             EEecCccc-HHHHH-HHHHhhcCCCCEEEEccCC-CCcHHHHHHHCCCCc
Confidence            99999543 33333 3444557788999999776 222355656564433

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=98.54  E-value=4.5e-07  Score=79.47  Aligned_cols=107  Identities=16%  Similarity=0.086  Sum_probs=76.7

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc---------------eecCCHHhhcCcCCEEEEcCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA---------------KFEEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~---------------~~~~~l~ell~~aDiVvl~lp  101 (240)
                      ++|+|||.|.||..+|..|...|.+|.+++|++  .+...+.|+               ....+.+++.+.+|+|++++|
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK   80 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD--YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIK   80 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT--HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh--HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecC
Confidence            689999999999999999999999999999865  243333332               122466676668999999999


Q ss_pred             CChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360          102 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       102 ~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      ... +...+ ++....+++++++|.+..| +-.++.+.+.+...++.
T Consensus        81 ~~~-~~~~l-~~l~~~l~~~t~Iv~~~nG-i~~~~~l~~~~~~~~vl  124 (320)
T 3i83_A           81 VVE-GADRV-GLLRDAVAPDTGIVLISNG-IDIEPEVAAAFPDNEVI  124 (320)
T ss_dssp             CCT-TCCHH-HHHTTSCCTTCEEEEECSS-SSCSHHHHHHSTTSCEE
T ss_pred             CCC-hHHHH-HHHHhhcCCCCEEEEeCCC-CChHHHHHHHCCCCcEE
Confidence            543 23322 3455567889999988766 33356777777655554

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=98.53  E-value=1.5e-07  Score=83.08  Aligned_cols=110  Identities=19%  Similarity=0.216  Sum_probs=77.8

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCce-------------ecCCHHhhcCcCCEEEEcCCC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-------------FEEDLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-------------~~~~l~ell~~aDiVvl~lp~  102 (240)
                      .++|+|||.|.||..+|..|...|.+|.++++. ...+...+.|..             ..+++++ +..+|+|++++|.
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk~   80 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVKA   80 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCCc
Confidence            478999999999999999999999999999984 233334444432             2346666 5889999999994


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEEcCCCc------------------ccCHHHHHHHHHhCCccE
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVNNARGA------------------IMDTQAVVDACSSGHIAG  149 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN~srg~------------------~vd~~aL~~aL~~g~i~g  149 (240)
                       ..+..++ ++....+++++++|.+..|=                  +-.++.+.+.+...++.+
T Consensus        81 -~~~~~~~-~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~v~~  143 (335)
T 3ghy_A           81 -PALESVA-AGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTRHVLG  143 (335)
T ss_dssp             -HHHHHHH-GGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGGGEEE
T ss_pred             -hhHHHHH-HHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcccEEE
Confidence             3444433 23444567899999999882                  223456777776555543

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=98.53  E-value=2.2e-07  Score=80.25  Aligned_cols=81  Identities=21%  Similarity=0.361  Sum_probs=68.0

Q ss_pred             ccccCCCeEEEEccCh-HHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~-iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      +.++.|+++.|||.|. +|+.+|..|...|+.|++++++.              .++++.+++||+|+.+++.    .++
T Consensus       155 ~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t--------------~~L~~~~~~ADIVI~Avg~----p~~  216 (285)
T 3p2o_A          155 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAGC----VNL  216 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SCHHHHHTTCSEEEECSSC----TTC
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHhhcCCEEEECCCC----CCc
Confidence            4579999999999988 69999999999999999998632              3788999999999999983    345


Q ss_pred             ccHHHHccCCCCCEEEEcCCCcc
Q 026360          110 FDKDRIAKMKKGVLIVNNARGAI  132 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg~~  132 (240)
                      +..+.   +|+|+++||++.-.+
T Consensus       217 I~~~~---vk~GavVIDVgi~~~  236 (285)
T 3p2o_A          217 LRSDM---VKEGVIVVDVGINRL  236 (285)
T ss_dssp             BCGGG---SCTTEEEEECCCEEC
T ss_pred             CCHHH---cCCCeEEEEeccCcc
Confidence            66654   599999999996653

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=98.53  E-value=6.2e-07  Score=78.28  Aligned_cols=108  Identities=16%  Similarity=0.159  Sum_probs=75.9

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCce--------------ecCCHHhhcCcCCEEEEcCCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK--------------FEEDLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~--------------~~~~l~ell~~aDiVvl~lp~  102 (240)
                      ++|+|||.|.||..+|..|...|.+|.+++|+.  .+...+.|..              ...+.++ +..+|+|++++|.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vilavk~   79 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--YEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVGLKT   79 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--HHHHHHTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEECCCG
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--HHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEecCC
Confidence            689999999999999999999999999999865  3444444432              1235554 6789999999994


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEE
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY  150 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga  150 (240)
                      . .+... -++....+++++++|.+..| +-.++.+.+.+...++.++
T Consensus        80 ~-~~~~~-l~~l~~~l~~~~~iv~l~nG-i~~~~~l~~~~~~~~v~~~  124 (312)
T 3hn2_A           80 F-ANSRY-EELIRPLVEEGTQILTLQNG-LGNEEALATLFGAERIIGG  124 (312)
T ss_dssp             G-GGGGH-HHHHGGGCCTTCEEEECCSS-SSHHHHHHHHTCGGGEEEE
T ss_pred             C-CcHHH-HHHHHhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEE
Confidence            3 23333 23455567889999999877 2235667777765555443

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=98.52  E-value=2.7e-07  Score=79.71  Aligned_cols=80  Identities=23%  Similarity=0.321  Sum_probs=67.2

Q ss_pred             ccccCCCeEEEEccCh-HHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~-iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      +.++.|+++.|||.|. +|+.+|..|...|+.|++++++.              .++++.+++||+|+.+++.    .++
T Consensus       156 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------~~L~~~~~~ADIVI~Avg~----p~~  217 (285)
T 3l07_A          156 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHTTKADILIVAVGK----PNF  217 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHHTTCSEEEECCCC----TTC
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHhcccCCEEEECCCC----CCC
Confidence            3579999999999988 69999999999999999987631              3788999999999999983    345


Q ss_pred             ccHHHHccCCCCCEEEEcCCCc
Q 026360          110 FDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg~  131 (240)
                      +..+.   +|+|+++||++.-.
T Consensus       218 I~~~~---vk~GavVIDvgi~~  236 (285)
T 3l07_A          218 ITADM---VKEGAVVIDVGINH  236 (285)
T ss_dssp             BCGGG---SCTTCEEEECCCEE
T ss_pred             CCHHH---cCCCcEEEEecccC
Confidence            66654   59999999999655

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=98.52  E-value=3.2e-07  Score=79.10  Aligned_cols=82  Identities=20%  Similarity=0.271  Sum_probs=68.1

Q ss_pred             ccccCCCeEEEEccChH-HHHHHHHhccC--CCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhh
Q 026360           31 AYDLEGKTVGTVGCGRI-GKLLLQRLKPF--NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~i-G~~~A~~l~~~--G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~  107 (240)
                      +.++.|+++.|||.|.+ |+.+|+.|...  |++|++++++.              .++.+.+++||+|+.+++.    .
T Consensus       153 ~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t--------------~~L~~~~~~ADIVI~Avg~----p  214 (281)
T 2c2x_A          153 DISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT--------------RDLPALTRQADIVVAAVGV----A  214 (281)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC--------------SCHHHHHTTCSEEEECSCC----T
T ss_pred             CCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch--------------hHHHHHHhhCCEEEECCCC----C
Confidence            45799999999999975 99999999999  89999987542              4788999999999999983    2


Q ss_pred             hcccHHHHccCCCCCEEEEcCCCccc
Q 026360          108 GMFDKDRIAKMKKGVLIVNNARGAIM  133 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~srg~~v  133 (240)
                      +++..+.   +|+|+++||+|...+-
T Consensus       215 ~~I~~~~---vk~GavVIDVgi~r~~  237 (281)
T 2c2x_A          215 HLLTADM---VRPGAAVIDVGVSRTD  237 (281)
T ss_dssp             TCBCGGG---SCTTCEEEECCEEEET
T ss_pred             cccCHHH---cCCCcEEEEccCCCCC
Confidence            3577655   5899999999976543

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.51  E-value=3.4e-07  Score=71.68  Aligned_cols=98  Identities=15%  Similarity=0.131  Sum_probs=65.5

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH-hcCceec----CC---HHhh-cCcCCEEEEcCCC
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFE----ED---LDTM-LPKCDIVVVNTPL  102 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~~~----~~---l~el-l~~aDiVvl~lp~  102 (240)
                      ....+++|.|+|+|.+|..+++.|+..|++|+++|+++...+.+. ..|....    .+   +.+. +..+|+|++++|.
T Consensus        15 ~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~   94 (155)
T 2g1u_A           15 KKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTND   94 (155)
T ss_dssp             --CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSC
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCC
Confidence            356789999999999999999999999999999998765444444 4454321    12   2222 5689999999985


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEEcCCCc
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN~srg~  131 (240)
                      .......  ....+.+.+...+|-..++.
T Consensus        95 ~~~~~~~--~~~~~~~~~~~~iv~~~~~~  121 (155)
T 2g1u_A           95 DSTNFFI--SMNARYMFNVENVIARVYDP  121 (155)
T ss_dssp             HHHHHHH--HHHHHHTSCCSEEEEECSSG
T ss_pred             cHHHHHH--HHHHHHHCCCCeEEEEECCH
Confidence            4333222  23444455566666665554

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=98.51  E-value=2.1e-07  Score=80.51  Aligned_cols=81  Identities=17%  Similarity=0.352  Sum_probs=68.0

Q ss_pred             ccccCCCeEEEEccCh-HHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~-iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      +.++.|+++.|||.|. +|+.+|+.|...|++|++++++.              .++.+.+++||+|+.+++.    .++
T Consensus       154 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------~~L~~~~~~ADIVI~Avg~----p~l  215 (288)
T 1b0a_A          154 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT--------------KNLRHHVENADLLIVAVGK----PGF  215 (288)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC--------------SCHHHHHHHCSEEEECSCC----TTC
T ss_pred             CCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHhccCCEEEECCCC----cCc
Confidence            4579999999999997 69999999999999999997532              4788899999999999983    235


Q ss_pred             ccHHHHccCCCCCEEEEcCCCcc
Q 026360          110 FDKDRIAKMKKGVLIVNNARGAI  132 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg~~  132 (240)
                      +..+.   +|+|+++||+|...+
T Consensus       216 I~~~~---vk~GavVIDVgi~r~  235 (288)
T 1b0a_A          216 IPGDW---IKEGAIVIDVGINRL  235 (288)
T ss_dssp             BCTTT---SCTTCEEEECCCEEC
T ss_pred             CCHHH---cCCCcEEEEccCCcc
Confidence            76655   599999999997653

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=98.51  E-value=2.2e-07  Score=79.94  Aligned_cols=77  Identities=19%  Similarity=0.269  Sum_probs=65.8

Q ss_pred             cCCCeEEEEccCh-HHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccH
Q 026360           34 LEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (240)
Q Consensus        34 l~g~~vgIIG~G~-iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~  112 (240)
                      +.|+++.|||.|. +|+.+|+.|...|++|++++++              ..++++.+++||+|+.+++.    .+++..
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~--------------t~~L~~~~~~ADIVI~Avg~----p~~I~~  209 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK--------------TKDIGSMTRSSKIVVVAVGR----PGFLNR  209 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------CSCHHHHHHHSSEEEECSSC----TTCBCG
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC--------------cccHHHhhccCCEEEECCCC----CccccH
Confidence            8999999999986 8999999999999999999863              14788999999999999983    346666


Q ss_pred             HHHccCCCCCEEEEcCCCc
Q 026360          113 DRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       113 ~~l~~mk~gailIN~srg~  131 (240)
                      +.   +|+|+++||+|.-.
T Consensus       210 ~~---vk~GavVIDvgi~~  225 (276)
T 3ngx_A          210 EM---VTPGSVVIDVGINY  225 (276)
T ss_dssp             GG---CCTTCEEEECCCEE
T ss_pred             hh---ccCCcEEEEeccCc
Confidence            54   59999999999654

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=98.50  E-value=2e-07  Score=81.07  Aligned_cols=80  Identities=19%  Similarity=0.257  Sum_probs=66.2

Q ss_pred             ccccCCCeEEEEccCh-HHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHH--hhcCcCCEEEEcCCCChhhh
Q 026360           31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLD--TMLPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~-iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~--ell~~aDiVvl~lp~~~~t~  107 (240)
                      +.++.|+++.|||.|. +|+.+|..|...|++|+++++...              +++  +.+++||+|+.++|.    .
T Consensus       160 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~--------------~l~l~~~~~~ADIVI~Avg~----p  221 (300)
T 4a26_A          160 GIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS--------------TEDMIDYLRTADIVIAAMGQ----P  221 (300)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC--------------HHHHHHHHHTCSEEEECSCC----T
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC--------------CchhhhhhccCCEEEECCCC----C
Confidence            3579999999999988 799999999999999999987321              455  889999999999983    3


Q ss_pred             hcccHHHHccCCCCCEEEEcCCCc
Q 026360          108 GMFDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~srg~  131 (240)
                      +++..+.   +|+|+++||++.-.
T Consensus       222 ~~I~~~~---vk~GavVIDvgi~~  242 (300)
T 4a26_A          222 GYVKGEW---IKEGAAVVDVGTTP  242 (300)
T ss_dssp             TCBCGGG---SCTTCEEEECCCEE
T ss_pred             CCCcHHh---cCCCcEEEEEeccC
Confidence            4566654   59999999998654

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=98.50  E-value=4.8e-07  Score=78.73  Aligned_cols=82  Identities=21%  Similarity=0.270  Sum_probs=67.9

Q ss_pred             ccccCCCeEEEEccCh-HHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~-iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      +.++.|+++.|||.|. +|+.+|+.|...|++|+++++.              ..++++.+++||+|+.+++.    .++
T Consensus       160 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~--------------t~~L~~~~~~ADIVI~Avg~----p~~  221 (301)
T 1a4i_A          160 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK--------------TAHLDEEVNKGDILVVATGQ----PEM  221 (301)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------CSSHHHHHTTCSEEEECCCC----TTC
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC--------------cccHHHHhccCCEEEECCCC----ccc
Confidence            4579999999999996 7999999999999999999753              24788999999999999984    345


Q ss_pred             ccHHHHccCCCCCEEEEcCCCccc
Q 026360          110 FDKDRIAKMKKGVLIVNNARGAIM  133 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg~~v  133 (240)
                      +..+.   +|||+++||+|...+-
T Consensus       222 I~~~~---vk~GavVIDVgi~~~~  242 (301)
T 1a4i_A          222 VKGEW---IKPGAIVIDCGINYVP  242 (301)
T ss_dssp             BCGGG---SCTTCEEEECCCBC--
T ss_pred             CCHHH---cCCCcEEEEccCCCcc
Confidence            77655   5899999999976543

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=98.49  E-value=8.3e-08  Score=80.87  Aligned_cols=71  Identities=11%  Similarity=0.160  Sum_probs=57.2

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHH
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~  114 (240)
                      .-++|||||+|.||.++|+.|+..|++|++|++.                  ++ +++||  ++++|.. ....++ .+.
T Consensus         5 ~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~------------------~~-~~~aD--ilavP~~-ai~~vl-~~l   61 (232)
T 3dfu_A            5 PRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP------------------ED-IRDFE--LVVIDAH-GVEGYV-EKL   61 (232)
T ss_dssp             CCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG------------------GG-GGGCS--EEEECSS-CHHHHH-HHH
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH------------------HH-hccCC--EEEEcHH-HHHHHH-HHH
Confidence            3468999999999999999999999999999972                  12 56789  7889965 444444 456


Q ss_pred             HccCCCCCEEEEcC
Q 026360          115 IAKMKKGVLIVNNA  128 (240)
Q Consensus       115 l~~mk~gailIN~s  128 (240)
                      ...+++++++++++
T Consensus        62 ~~~l~~g~ivvd~s   75 (232)
T 3dfu_A           62 SAFARRGQMFLHTS   75 (232)
T ss_dssp             HTTCCTTCEEEECC
T ss_pred             HHhcCCCCEEEEEC
Confidence            66789999999985

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=98.49  E-value=3.7e-07  Score=78.91  Aligned_cols=80  Identities=23%  Similarity=0.401  Sum_probs=67.1

Q ss_pred             ccccCCCeEEEEccCh-HHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~-iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      +.++.|+++.|||.|. +|+.+|..|...|+.|+++++..              .++++.+++||+|+.+++.    .++
T Consensus       156 ~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T--------------~~L~~~~~~ADIVI~Avg~----p~~  217 (286)
T 4a5o_A          156 GADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT--------------RDLADHVSRADLVVVAAGK----PGL  217 (286)
T ss_dssp             TCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC--------------SCHHHHHHTCSEEEECCCC----TTC
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC--------------cCHHHHhccCCEEEECCCC----CCC
Confidence            4579999999999987 89999999999999999987532              3788899999999999983    345


Q ss_pred             ccHHHHccCCCCCEEEEcCCCc
Q 026360          110 FDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg~  131 (240)
                      +..+.   +|||+++||++.-.
T Consensus       218 I~~~~---vk~GavVIDvgi~~  236 (286)
T 4a5o_A          218 VKGEW---IKEGAIVIDVGINR  236 (286)
T ss_dssp             BCGGG---SCTTCEEEECCSCS
T ss_pred             CCHHH---cCCCeEEEEecccc
Confidence            66654   59999999998655

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=98.48  E-value=3.3e-07  Score=80.34  Aligned_cols=105  Identities=16%  Similarity=0.195  Sum_probs=72.0

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc-------------eecCCHHhhcCcCCEEEEcC
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA-------------KFEEDLDTMLPKCDIVVVNT  100 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~-------------~~~~~l~ell~~aDiVvl~l  100 (240)
                      ...++|+|||.|.||..+|..|...|.+|.+| +++...+...+.|.             ...++.++ ++.+|+|++++
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vilav   94 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQGADLVLFCV   94 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEEECC
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEEEEc
Confidence            45789999999999999999999999999999 65433333433332             22345554 58999999999


Q ss_pred             CCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHH
Q 026360          101 PLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACS  143 (240)
Q Consensus       101 p~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~  143 (240)
                      |.. .+..++ ++....+++++++|.+..|= -.++.+.+.+.
T Consensus        95 k~~-~~~~~l-~~l~~~l~~~~~iv~~~nGi-~~~~~l~~~~~  134 (318)
T 3hwr_A           95 KST-DTQSAA-LAMKPALAKSALVLSLQNGV-ENADTLRSLLE  134 (318)
T ss_dssp             CGG-GHHHHH-HHHTTTSCTTCEEEEECSSS-SHHHHHHHHCC
T ss_pred             ccc-cHHHHH-HHHHHhcCCCCEEEEeCCCC-CcHHHHHHHcC
Confidence            954 444443 34555678899999987762 22355666654

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=98.48  E-value=3e-07  Score=81.97  Aligned_cols=93  Identities=9%  Similarity=0.104  Sum_probs=69.0

Q ss_pred             cCCCeEEEEccChHHHHHHHHhc-cC-CCEEEEEcCCCCChhHHH-hc----C--ceecCCHHhhcCcCCEEEEcCCCCh
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLK-PF-NCNLLYHDRVKMDPQLEK-ET----G--AKFEEDLDTMLPKCDIVVVNTPLTE  104 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~-~~-G~~V~~~d~~~~~~~~~~-~~----g--~~~~~~l~ell~~aDiVvl~lp~~~  104 (240)
                      ...++++|||.|.+|+.+++.+. .. ..+|.+||+++...+.+. .+    |  +..+.+++++++++|+|++|+|...
T Consensus       127 ~~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~~  206 (350)
T 1x7d_A          127 PNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKA  206 (350)
T ss_dssp             TTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSS
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCCC
Confidence            35789999999999999998774 33 457999999764443332 22    5  3456789999999999999999652


Q ss_pred             hhhhcccHHHHccCCCCCEEEEcCCC
Q 026360          105 KTRGMFDKDRIAKMKKGVLIVNNARG  130 (240)
Q Consensus       105 ~t~~~i~~~~l~~mk~gailIN~srg  130 (240)
                       ...++..   +.+++|..++++|..
T Consensus       207 -~~pvl~~---~~l~~G~~V~~vgs~  228 (350)
T 1x7d_A          207 -YATIITP---DMLEPGMHLNAVGGD  228 (350)
T ss_dssp             -EEEEECG---GGCCTTCEEEECSCC
T ss_pred             -CCceecH---HHcCCCCEEEECCCC
Confidence             2344443   457899999999863

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.44  E-value=3.2e-07  Score=67.50  Aligned_cols=89  Identities=19%  Similarity=0.207  Sum_probs=60.8

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCC-CEEEEEcCCCCChhHHHhcCceec-------CCHHhhcCcCCEEEEcCCCChhh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFE-------EDLDTMLPKCDIVVVNTPLTEKT  106 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G-~~V~~~d~~~~~~~~~~~~g~~~~-------~~l~ell~~aDiVvl~lp~~~~t  106 (240)
                      .+++|+|+|.|.||+.+++.|...| ++|+++++++...+.....++...       .+++++++++|+|+.++|... +
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~-~   82 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFL-T   82 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGG-H
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchh-h
Confidence            4679999999999999999999999 899999987544343333343211       235567889999999998332 1


Q ss_pred             hhcccHHHHccCCCCCEEEEcC
Q 026360          107 RGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       107 ~~~i~~~~l~~mk~gailIN~s  128 (240)
                      ..++.    ...+.|...++++
T Consensus        83 ~~~~~----~~~~~g~~~~~~~  100 (118)
T 3ic5_A           83 PIIAK----AAKAAGAHYFDLT  100 (118)
T ss_dssp             HHHHH----HHHHTTCEEECCC
T ss_pred             HHHHH----HHHHhCCCEEEec
Confidence            22211    1134566677765

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=98.44  E-value=1.4e-06  Score=76.47  Aligned_cols=89  Identities=21%  Similarity=0.371  Sum_probs=68.7

Q ss_pred             CCCeEEEEccChHHHHHHHHhcc-CC-CEEEEEcCCCCChhHHHh----cCc--eecCCHHhhcCcCCEEEEcCCCChhh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKP-FN-CNLLYHDRVKMDPQLEKE----TGA--KFEEDLDTMLPKCDIVVVNTPLTEKT  106 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~-~G-~~V~~~d~~~~~~~~~~~----~g~--~~~~~l~ell~~aDiVvl~lp~~~~t  106 (240)
                      ..++++|||.|.+|+.+++.+.. ++ .+|.+|||+ .....+..    .|+  ... ++++++++||+|++|+|..   
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~a~~la~~l~~~~g~~~~~~-~~~eav~~aDIVi~aT~s~---  194 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-ASPEILERIGRRCGVPARMA-APADIAAQADIVVTATRST---  194 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT-CCHHHHHHHHHHHTSCEEEC-CHHHHHHHCSEEEECCCCS---
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc-HHHHHHHHHHHhcCCeEEEe-CHHHHHhhCCEEEEccCCC---
Confidence            47899999999999999998875 34 479999998 44444332    354  345 9999999999999999964   


Q ss_pred             hhcccHHHHccCCCCCEEEEcCCCc
Q 026360          107 RGMFDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       107 ~~~i~~~~l~~mk~gailIN~srg~  131 (240)
                      ..++..   +.++||+.++++|...
T Consensus       195 ~pvl~~---~~l~~G~~V~~vGs~~  216 (313)
T 3hdj_A          195 TPLFAG---QALRAGAFVGAIGSSL  216 (313)
T ss_dssp             SCSSCG---GGCCTTCEEEECCCSS
T ss_pred             CcccCH---HHcCCCcEEEECCCCC
Confidence            345553   3589999999998643

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=98.42  E-value=1.4e-07  Score=83.03  Aligned_cols=94  Identities=18%  Similarity=0.176  Sum_probs=68.2

Q ss_pred             ccccCCCeEEEEccChH-HHHHHHHhccCCCEEEEEcCCCCC-hhHHHhcC--ce-e-----c--CCHHhhcCcCCEEEE
Q 026360           31 AYDLEGKTVGTVGCGRI-GKLLLQRLKPFNCNLLYHDRVKMD-PQLEKETG--AK-F-----E--EDLDTMLPKCDIVVV   98 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~i-G~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~~g--~~-~-----~--~~l~ell~~aDiVvl   98 (240)
                      +.++.|+++.|||.|.| |+.+|+.|...|++|+++|++... ......++  .. .     .  .++++.+++||+|+.
T Consensus       172 g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIs  251 (320)
T 1edz_A          172 GNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVIT  251 (320)
T ss_dssp             TCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEE
T ss_pred             CCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEE
Confidence            44799999999999975 999999999999999999886210 00011111  11 1     1  478899999999999


Q ss_pred             cCCCChhhhhcccHHHHccCCCCCEEEEcCCC
Q 026360           99 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNARG  130 (240)
Q Consensus        99 ~lp~~~~t~~~i~~~~l~~mk~gailIN~srg  130 (240)
                      +++..   ..++..+.   +|+|+++||+|..
T Consensus       252 Atg~p---~~vI~~e~---vk~GavVIDVgi~  277 (320)
T 1edz_A          252 GVPSE---NYKFPTEY---IKEGAVCINFACT  277 (320)
T ss_dssp             CCCCT---TCCBCTTT---SCTTEEEEECSSS
T ss_pred             CCCCC---cceeCHHH---cCCCeEEEEcCCC
Confidence            99832   22366554   5899999999853

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.42  E-value=3.9e-07  Score=70.23  Aligned_cols=91  Identities=18%  Similarity=0.235  Sum_probs=63.8

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec----CCHHhh----cCcCCEEEEcCCCChhhh
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLDTM----LPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~el----l~~aDiVvl~lp~~~~t~  107 (240)
                      ..++.|+|+|.+|+.+|+.|+..|++|+++|+++...+.....|+...    .+.+.+    +.++|+|++++|....+.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~   86 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAG   86 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHHH
Confidence            347899999999999999999999999999997655555555666422    122211    468999999999665554


Q ss_pred             hcccHHHHccCCCCCEEEEcC
Q 026360          108 GMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~s  128 (240)
                      .+.  ..++.+.++..+|-..
T Consensus        87 ~~~--~~a~~~~~~~~iiar~  105 (140)
T 3fwz_A           87 EIV--ASARAKNPDIEIIARA  105 (140)
T ss_dssp             HHH--HHHHHHCSSSEEEEEE
T ss_pred             HHH--HHHHHHCCCCeEEEEE
Confidence            332  3445566666666443

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.39  E-value=1.3e-06  Score=66.17  Aligned_cols=90  Identities=18%  Similarity=0.106  Sum_probs=60.0

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH-hcCceec----CCHHh----hcCcCCEEEEcCCCChhh
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFE----EDLDT----MLPKCDIVVVNTPLTEKT  106 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~~~----~~l~e----ll~~aDiVvl~lp~~~~t  106 (240)
                      +++|+|+|+|.+|+.+|+.|...|++|+++|+++...+... ..++...    .+.+.    .++++|+|++++|.....
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~   83 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVN   83 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchHH
Confidence            57999999999999999999999999999998653333333 2354321    12222    267899999999854332


Q ss_pred             hhcccHHHHccCCCCCEEEEc
Q 026360          107 RGMFDKDRIAKMKKGVLIVNN  127 (240)
Q Consensus       107 ~~~i~~~~l~~mk~gailIN~  127 (240)
                      .  .-....+.++++.+++-+
T Consensus        84 ~--~~~~~~~~~~~~~ii~~~  102 (140)
T 1lss_A           84 L--MSSLLAKSYGINKTIARI  102 (140)
T ss_dssp             H--HHHHHHHHTTCCCEEEEC
T ss_pred             H--HHHHHHHHcCCCEEEEEe
Confidence            2  222345557777666544

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=98.33  E-value=9e-07  Score=75.98  Aligned_cols=97  Identities=15%  Similarity=0.103  Sum_probs=61.7

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHH-HhcC----ceecCCHHhhcC-cCCEEEEcCCCChh
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETG----AKFEEDLDTMLP-KCDIVVVNTPLTEK  105 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~-~~~g----~~~~~~l~ell~-~aDiVvl~lp~~~~  105 (240)
                      .++.+++++|+|.|.+|++++..|...|.+|++++|+..+.+.. ...+    +.. .+++++.+ ++|+|+.++|....
T Consensus       115 ~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~-~~~~~~~~~~~DivIn~t~~~~~  193 (272)
T 1p77_A          115 WLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQA-VSMDSIPLQTYDLVINATSAGLS  193 (272)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEE-EEGGGCCCSCCSEEEECCCC---
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEE-eeHHHhccCCCCEEEECCCCCCC
Confidence            45789999999999999999999999999999999975332222 2221    222 24455444 89999999996532


Q ss_pred             hhh-cccHHHHccCCCCCEEEEcCCCcc
Q 026360          106 TRG-MFDKDRIAKMKKGVLIVNNARGAI  132 (240)
Q Consensus       106 t~~-~i~~~~l~~mk~gailIN~srg~~  132 (240)
                      ... .+..+.   ++++.+++|+.-.+.
T Consensus       194 ~~~~~i~~~~---l~~~~~v~D~~y~p~  218 (272)
T 1p77_A          194 GGTASVDAEI---LKLGSAFYDMQYAKG  218 (272)
T ss_dssp             ----CCCHHH---HHHCSCEEESCCCTT
T ss_pred             CCCCCCCHHH---cCCCCEEEEeeCCCC
Confidence            110 122222   245566666665443

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=98.31  E-value=9.4e-07  Score=79.67  Aligned_cols=89  Identities=15%  Similarity=0.123  Sum_probs=62.5

Q ss_pred             CeEEEEccChHHHHHHHHhcc-CCCEEEEEc---CCCCChhH-HHhcC------------c-------eecCCHHhhcCc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKP-FNCNLLYHD---RVKMDPQL-EKETG------------A-------KFEEDLDTMLPK   92 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~-~G~~V~~~d---~~~~~~~~-~~~~g------------~-------~~~~~l~ell~~   92 (240)
                      ++|+|||.|.||..+|..|.. .|++|.+|+   +++...+. ....|            .       ....++++.++.
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   82 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISG   82 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHTT
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhCC
Confidence            589999999999999999977 599999999   43222222 11112            1       133578888899


Q ss_pred             CCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEc
Q 026360           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNN  127 (240)
Q Consensus        93 aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~  127 (240)
                      +|+|++++|... ...++ ++....++++++||+.
T Consensus        83 aD~Vilav~~~~-~~~v~-~~l~~~l~~~~ivv~~  115 (404)
T 3c7a_A           83 ADVVILTVPAFA-HEGYF-QAMAPYVQDSALIVGL  115 (404)
T ss_dssp             CSEEEECSCGGG-HHHHH-HHHTTTCCTTCEEEET
T ss_pred             CCEEEEeCchHH-HHHHH-HHHHhhCCCCcEEEEc
Confidence            999999999432 33333 3455567889999985

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=98.30  E-value=2.2e-06  Score=75.47  Aligned_cols=87  Identities=18%  Similarity=0.284  Sum_probs=65.4

Q ss_pred             CCCeEEEEccChHHHHHHHHhcc-C-CCEEEEEcCCCCChhHHH-hc-----CceecCCHHhhcCcCCEEEEcCCCChhh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKP-F-NCNLLYHDRVKMDPQLEK-ET-----GAKFEEDLDTMLPKCDIVVVNTPLTEKT  106 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~-~-G~~V~~~d~~~~~~~~~~-~~-----g~~~~~~l~ell~~aDiVvl~lp~~~~t  106 (240)
                      ..++++|||.|.+|+.+++.+.. . ..+|.+|||++.+.+.+. .+     .+. +.++++++ ++|+|++++|..   
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~-~~~~~e~v-~aDvVi~aTp~~---  198 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS-VQPAEEAS-RCDVLVTTTPSR---  198 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE-ECCHHHHT-SSSEEEECCCCS---
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE-ECCHHHHh-CCCEEEEeeCCC---
Confidence            57899999999999999998876 3 357999999764433332 21     244 67899999 999999999954   


Q ss_pred             hhcccHHHHccCCCCCEEEEcCC
Q 026360          107 RGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       107 ~~~i~~~~l~~mk~gailIN~sr  129 (240)
                      ..++..   ..+++|..+++++.
T Consensus       199 ~pv~~~---~~l~~G~~V~~ig~  218 (322)
T 1omo_A          199 KPVVKA---EWVEEGTHINAIGA  218 (322)
T ss_dssp             SCCBCG---GGCCTTCEEEECSC
T ss_pred             CceecH---HHcCCCeEEEECCC
Confidence            244443   45789999999963

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.28  E-value=1.4e-06  Score=66.69  Aligned_cols=89  Identities=17%  Similarity=0.106  Sum_probs=58.6

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec----CCHHhh----cCcCCEEEEcCCCChhh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLDTM----LPKCDIVVVNTPLTEKT  106 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~el----l~~aDiVvl~lp~~~~t  106 (240)
                      .++++.|+|+|.+|+.+|+.|...|++|+++|+++...+.....++...    .+.+.+    +.++|+|++++|..+.+
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~~n   84 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDEFN   84 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHHHH
Confidence            4678999999999999999999999999999987644444444554321    222222    46899999999943332


Q ss_pred             hhcccHHHHccCCCCCEEE
Q 026360          107 RGMFDKDRIAKMKKGVLIV  125 (240)
Q Consensus       107 ~~~i~~~~l~~mk~gailI  125 (240)
                        +......+.+....+++
T Consensus        85 --~~~~~~a~~~~~~~iia  101 (141)
T 3llv_A           85 --LKILKALRSVSDVYAIV  101 (141)
T ss_dssp             --HHHHHHHHHHCCCCEEE
T ss_pred             --HHHHHHHHHhCCceEEE
Confidence              22233444444333444

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=98.28  E-value=6.5e-07  Score=68.06  Aligned_cols=96  Identities=13%  Similarity=0.172  Sum_probs=60.1

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec----CCHH---hh-cCcCCEEEEcCCCChh
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLD---TM-LPKCDIVVVNTPLTEK  105 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~---el-l~~aDiVvl~lp~~~~  105 (240)
                      +.++++.|+|+|.+|+.+++.|...|++|+++|+++...+.....+....    .+.+   ++ +.++|+|+.++|...+
T Consensus         4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~   83 (144)
T 2hmt_A            4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQ   83 (144)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSCHH
T ss_pred             CcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCchH
Confidence            56789999999999999999999999999999986432222222333211    2222   22 5689999999986422


Q ss_pred             hhhcccHHHHccCCCCCEEEEcCCCc
Q 026360          106 TRGMFDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailIN~srg~  131 (240)
                      ... .-....+.+.+. .+|-.+.+.
T Consensus        84 ~~~-~~~~~~~~~~~~-~ii~~~~~~  107 (144)
T 2hmt_A           84 AST-LTTLLLKELDIP-NIWVKAQNY  107 (144)
T ss_dssp             HHH-HHHHHHHHTTCS-EEEEECCSH
T ss_pred             HHH-HHHHHHHHcCCC-eEEEEeCCH
Confidence            221 222344456665 455544443

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=98.26  E-value=2.7e-06  Score=74.91  Aligned_cols=116  Identities=8%  Similarity=-0.026  Sum_probs=84.4

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHH-----------Hhc--------------CceecCCHHhh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-----------KET--------------GAKFEEDLDTM   89 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~-----------~~~--------------g~~~~~~l~el   89 (240)
                      .-.+|+|||.|.||..+|..+...|++|+.||+++...+..           .+.              .+....++++.
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a   84 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEA   84 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHH
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhH
Confidence            35689999999999999999999999999999875321110           001              12345688899


Q ss_pred             cCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEee
Q 026360           90 LPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  153 (240)
Q Consensus        90 l~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lD  153 (240)
                      +++||+|+=++|-+-+.+.-+-++.=+.++++++|-.-+++  +....+.+.++. .=+..++-
T Consensus        85 ~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSs--l~is~ia~~~~~-p~r~ig~H  145 (319)
T 3ado_A           85 VEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSC--LLPSKLFTGLAH-VKQCIVAH  145 (319)
T ss_dssp             TTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSS--CCHHHHHTTCTT-GGGEEEEE
T ss_pred             hccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhh--ccchhhhhhccC-CCcEEEec
Confidence            99999999999988888877777777888999988655444  556777776643 33444554

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=98.25  E-value=8.8e-07  Score=76.65  Aligned_cols=96  Identities=14%  Similarity=0.177  Sum_probs=65.8

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhH-HHhcC----ceecCCHHhhcCcCCEEEEcCCCCh
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-EKETG----AKFEEDLDTMLPKCDIVVVNTPLTE  104 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~-~~~~g----~~~~~~l~ell~~aDiVvl~lp~~~  104 (240)
                      +.++.|+++.|+|.|.+|++++..|...|+ +|++++|+..+.+. +...+    +.. .+++++.+++|+||.++|...
T Consensus       121 ~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~-~~~~~l~~~aDiIInaTp~gm  199 (281)
T 3o8q_A          121 QVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKA-QAFEQLKQSYDVIINSTSASL  199 (281)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEE-EEGGGCCSCEEEEEECSCCCC
T ss_pred             CCCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeE-eeHHHhcCCCCEEEEcCcCCC
Confidence            346889999999999999999999999996 89999997533322 22222    222 256666689999999999653


Q ss_pred             hhh-hcccHHHHccCCCCCEEEEcCCC
Q 026360          105 KTR-GMFDKDRIAKMKKGVLIVNNARG  130 (240)
Q Consensus       105 ~t~-~~i~~~~l~~mk~gailIN~srg  130 (240)
                      ... ..+..   +.++++.+++|+.-.
T Consensus       200 ~~~~~~l~~---~~l~~~~~V~DlvY~  223 (281)
T 3o8q_A          200 DGELPAIDP---VIFSSRSVCYDMMYG  223 (281)
T ss_dssp             ----CSCCG---GGEEEEEEEEESCCC
T ss_pred             CCCCCCCCH---HHhCcCCEEEEecCC
Confidence            221 12332   235667777777543

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=98.24  E-value=4.9e-06  Score=71.28  Aligned_cols=97  Identities=13%  Similarity=0.172  Sum_probs=65.7

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChh-HHHhcCc---eecCCHHhhc-CcCCEEEEcCCCChhh
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETGA---KFEEDLDTML-PKCDIVVVNTPLTEKT  106 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~~g~---~~~~~l~ell-~~aDiVvl~lp~~~~t  106 (240)
                      .++.|+++.|+|.|.+|++++..|...|.+|++++|+..+.+ .+...+.   ....+++++. .++|+|+.++|.....
T Consensus       115 ~~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~~  194 (271)
T 1nyt_A          115 FIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISG  194 (271)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGGT
T ss_pred             cCcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCCC
Confidence            457899999999999999999999999999999998753322 2222221   1122444444 5899999999865331


Q ss_pred             h-hcccHHHHccCCCCCEEEEcCCCc
Q 026360          107 R-GMFDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       107 ~-~~i~~~~l~~mk~gailIN~srg~  131 (240)
                      . ..+..+   .++++.+++|+.-..
T Consensus       195 ~~~~i~~~---~l~~~~~v~D~~y~p  217 (271)
T 1nyt_A          195 DIPAIPSS---LIHPGIYCYDMFYQK  217 (271)
T ss_dssp             CCCCCCGG---GCCTTCEEEESCCCS
T ss_pred             CCCCCCHH---HcCCCCEEEEeccCC
Confidence            0 012222   357788888887654

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=98.22  E-value=2.4e-06  Score=74.78  Aligned_cols=105  Identities=11%  Similarity=0.167  Sum_probs=69.1

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHH-----Hh-------cCceecCCHHhhcCcCCEEEEcCCC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLE-----KE-------TGAKFEEDLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~-----~~-------~g~~~~~~l~ell~~aDiVvl~lp~  102 (240)
                      .++|+|||.|.||..+|..+...|+ +|..+|+++...+..     ..       ..+....++ +.+++||+|+++++.
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg~   82 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITASI   82 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence            4689999999999999999998888 999999876433221     00       112333566 678999999999842


Q ss_pred             Ch-----------hhhh---cccHHHHccCCCCCEEEEcCCCcccCHHHHHHHH
Q 026360          103 TE-----------KTRG---MFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDAC  142 (240)
Q Consensus       103 ~~-----------~t~~---~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL  142 (240)
                      ..           ++..   -+.++ +....|++++++++...-+....+.+..
T Consensus        83 p~~~g~~r~d~~~~~~~i~~~i~~~-i~~~~~~~iii~~sNp~~~~~~~~~~~~  135 (317)
T 2ewd_A           83 PGRPKDDRSELLFGNARILDSVAEG-VKKYCPNAFVICITNPLDVMVSHFQKVS  135 (317)
T ss_dssp             SSCCSSCGGGGHHHHHHHHHHHHHH-HHHHCTTSEEEECCSSHHHHHHHHHHHH
T ss_pred             CCCCCCcHHHHHHhhHHHHHHHHHH-HHHHCCCcEEEEeCChHHHHHHHHHHhh
Confidence            11           1111   11222 2223579999999876555555555554

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=98.22  E-value=1.7e-06  Score=75.40  Aligned_cols=106  Identities=16%  Similarity=0.222  Sum_probs=67.6

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCC----------HHhhcCcCCEEEEcCCCChhh
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEED----------LDTMLPKCDIVVVNTPLTEKT  106 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~----------l~ell~~aDiVvl~lp~~~~t  106 (240)
                      ++|+|||.|.||..+|..|. .|.+|.+++|++...+...+.|.....+          -++....+|+|++++|.. .+
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~-~~   80 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTVKQH-QL   80 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECCCGG-GH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEeCHH-HH
Confidence            68999999999999999999 8999999998653334444445432210          024567899999999832 23


Q ss_pred             hhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360          107 RGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       107 ~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      ...+  +.++.+.+++ +|.+.-|=- .++.+.+.+...++.
T Consensus        81 ~~~l--~~l~~~~~~~-ivs~~nGi~-~~e~l~~~~~~~~vl  118 (307)
T 3ego_A           81 QSVF--SSLERIGKTN-ILFLQNGMG-HIHDLKDWHVGHSIY  118 (307)
T ss_dssp             HHHH--HHTTSSCCCE-EEECCSSSH-HHHHHHTCCCSCEEE
T ss_pred             HHHH--HHhhcCCCCe-EEEecCCcc-HHHHHHHhCCCCcEE
Confidence            3332  2334445566 888876632 233444444444443

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=98.19  E-value=1.1e-05  Score=72.55  Aligned_cols=96  Identities=23%  Similarity=0.323  Sum_probs=76.0

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCC----CCCh---------hHHHhcC-ceecCCHHhhcCcCCE
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRV----KMDP---------QLEKETG-AKFEEDLDTMLPKCDI   95 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~----~~~~---------~~~~~~g-~~~~~~l~ell~~aDi   95 (240)
                      +..+.+.+|.|+|.|.+|..+|+.|.+.|. +|+++|++    ....         ..+...+ .....+++|.++++|+
T Consensus       187 g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADV  266 (388)
T 1vl6_A          187 EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADF  266 (388)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSE
T ss_pred             CCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCE
Confidence            347899999999999999999999999999 79999987    3221         1222221 1124579999999999


Q ss_pred             EEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCc
Q 026360           96 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus        96 Vvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~  131 (240)
                      ++-+..     .+++.++.++.|+++++++.+|+..
T Consensus       267 lIG~Sa-----p~l~t~emVk~Ma~~pIIfalSNPt  297 (388)
T 1vl6_A          267 FIGVSR-----GNILKPEWIKKMSRKPVIFALANPV  297 (388)
T ss_dssp             EEECSC-----SSCSCHHHHTTSCSSCEEEECCSSS
T ss_pred             EEEeCC-----CCccCHHHHHhcCCCCEEEEcCCCC
Confidence            877742     3889999999999999999999855

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=98.18  E-value=4.7e-06  Score=72.25  Aligned_cols=108  Identities=13%  Similarity=0.249  Sum_probs=71.4

Q ss_pred             CCeEEEEccChHHHH-HHHHhcc-CCCEEE-EEcCCCCChh-HHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360           36 GKTVGTVGCGRIGKL-LLQRLKP-FNCNLL-YHDRVKMDPQ-LEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        36 g~~vgIIG~G~iG~~-~A~~l~~-~G~~V~-~~d~~~~~~~-~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~  111 (240)
                      -.+|||||+|.||+. ++..++. -++++. ++|+++...+ .+...|+..++++++++++.|+|++++|......  +-
T Consensus         6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~~h~~--~~   83 (308)
T 3uuw_A            6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTETHYE--II   83 (308)
T ss_dssp             CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGGGHHH--HH
T ss_pred             cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcHhHHH--HH
Confidence            468999999999996 8888876 477876 6888654333 3344677667899999999999999999443222  11


Q ss_pred             HHHHccCCCCC-EEEE-cCCCcccCHHHHHHHHHhCCcc
Q 026360          112 KDRIAKMKKGV-LIVN-NARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       112 ~~~l~~mk~ga-ilIN-~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      ...   ++.|. +++. -..-.+-+.++|.++.++.++.
T Consensus        84 ~~a---l~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~  119 (308)
T 3uuw_A           84 KIL---LNLGVHVYVDKPLASTVSQGEELIELSTKKNLN  119 (308)
T ss_dssp             HHH---HHTTCEEEECSSSSSSHHHHHHHHHHHHHHTCC
T ss_pred             HHH---HHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCCE
Confidence            223   33443 3433 2223444566677777775554

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=98.18  E-value=3.4e-07  Score=79.27  Aligned_cols=93  Identities=12%  Similarity=0.088  Sum_probs=63.5

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc---eecCCHHhhc-CcCCEEEEcCCCChhhhhcccH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA---KFEEDLDTML-PKCDIVVVNTPLTEKTRGMFDK  112 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~---~~~~~l~ell-~~aDiVvl~lp~~~~t~~~i~~  112 (240)
                      ++|+|||.|.||..+|..|...|.+|.+++|++...+.....|.   ....+..+.+ ..+|+|++++|.. .+...+ +
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~~-~~~~~l-~   80 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTH-QLDAVI-P   80 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCGG-GHHHHG-G
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCcc-CHHHHH-H
Confidence            68999999999999999999889999999987532222112232   1111333444 8899999999943 333333 2


Q ss_pred             HHHccCCCCCEEEEcCCCc
Q 026360          113 DRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       113 ~~l~~mk~gailIN~srg~  131 (240)
                      +....+++++++|.+.-|=
T Consensus        81 ~l~~~l~~~~~iv~~~nGi   99 (294)
T 3g17_A           81 HLTYLAHEDTLIILAQNGY   99 (294)
T ss_dssp             GHHHHEEEEEEEEECCSSC
T ss_pred             HHHHhhCCCCEEEEeccCc
Confidence            3444567788999998774

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=98.17  E-value=8.8e-06  Score=63.07  Aligned_cols=104  Identities=15%  Similarity=0.179  Sum_probs=74.7

Q ss_pred             CCCeEEEEcc----ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcc
Q 026360           35 EGKTVGTVGC----GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (240)
Q Consensus        35 ~g~~vgIIG~----G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i  110 (240)
                      +-++|+|||.    |++|..+++.|+..|++|+..++.....+   -.|...+.+++|+-+..|++++++|. +....++
T Consensus        12 ~p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~vnp~~~~~~---i~G~~~~~sl~el~~~vDlavi~vp~-~~~~~v~   87 (140)
T 1iuk_A           12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEE---LFGEEAVASLLDLKEPVDILDVFRPP-SALMDHL   87 (140)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSE---ETTEECBSSGGGCCSCCSEEEECSCH-HHHTTTH
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHHHHCCCEEEEeCCCcccCc---CCCEEecCCHHHCCCCCCEEEEEeCH-HHHHHHH
Confidence            4678999999    89999999999999999776666410111   13677677899998899999999994 4445555


Q ss_pred             cHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360          111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       111 ~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      . +..+ .....++++.+..    ++++.+.+++..+.
T Consensus        88 ~-~~~~-~gi~~i~~~~g~~----~~~~~~~a~~~Gir  119 (140)
T 1iuk_A           88 P-EVLA-LRPGLVWLQSGIR----HPEFEKALKEAGIP  119 (140)
T ss_dssp             H-HHHH-HCCSCEEECTTCC----CHHHHHHHHHTTCC
T ss_pred             H-HHHH-cCCCEEEEcCCcC----HHHHHHHHHHcCCE
Confidence            3 3333 3444666665432    57888888887776

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=98.15  E-value=6.4e-06  Score=70.87  Aligned_cols=95  Identities=16%  Similarity=0.115  Sum_probs=64.3

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhH-HHhcC---ceecCCHHhhc-CcCCEEEEcCCCCh
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-EKETG---AKFEEDLDTML-PKCDIVVVNTPLTE  104 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~-~~~~g---~~~~~~l~ell-~~aDiVvl~lp~~~  104 (240)
                      +.++.|+++.|+|.|.+|++++..|...|. +|++++|+..+.+. +...+   +... +++++- .++|+||.++|..-
T Consensus       115 ~~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~-~~~~l~~~~~DivInaTp~gm  193 (272)
T 3pwz_A          115 GEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRIS-RYEALEGQSFDIVVNATSASL  193 (272)
T ss_dssp             CCCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEE-CSGGGTTCCCSEEEECSSGGG
T ss_pred             CCCccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEe-eHHHhcccCCCEEEECCCCCC
Confidence            346789999999999999999999999996 89999997543332 22322   2222 444443 78999999999543


Q ss_pred             hhh-hcccHHHHccCCCCCEEEEcCC
Q 026360          105 KTR-GMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       105 ~t~-~~i~~~~l~~mk~gailIN~sr  129 (240)
                      ... ..+..   +.++++.+++|+.-
T Consensus       194 ~~~~~~i~~---~~l~~~~~V~DlvY  216 (272)
T 3pwz_A          194 TADLPPLPA---DVLGEAALAYELAY  216 (272)
T ss_dssp             GTCCCCCCG---GGGTTCSEEEESSC
T ss_pred             CCCCCCCCH---HHhCcCCEEEEeec
Confidence            211 12332   23567777777753

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=98.15  E-value=1.1e-05  Score=70.29  Aligned_cols=107  Identities=17%  Similarity=0.271  Sum_probs=71.9

Q ss_pred             CeEEEEccChHHHH-HHHHhcc-CCCEEE-EEcCCCCChhH-HHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccH
Q 026360           37 KTVGTVGCGRIGKL-LLQRLKP-FNCNLL-YHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (240)
Q Consensus        37 ~~vgIIG~G~iG~~-~A~~l~~-~G~~V~-~~d~~~~~~~~-~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~  112 (240)
                      .+|||||+|.||+. ++..+.. -+++++ ++|+++...+. ++..|+...++.+++..+.|+|++++|.......    
T Consensus         6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~h~~~----   81 (319)
T 1tlt_A            6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDV----   81 (319)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHH----
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchhHHHH----
Confidence            58999999999997 8887765 477865 88887655543 3445766667888876789999999995432221    


Q ss_pred             HHHccCCCCC-EEEEc-CCCcccCHHHHHHHHHhCCcc
Q 026360          113 DRIAKMKKGV-LIVNN-ARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       113 ~~l~~mk~ga-ilIN~-srg~~vd~~aL~~aL~~g~i~  148 (240)
                       ....++.|. +++.- ....+-+.++|.++.++.++.
T Consensus        82 -~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~  118 (319)
T 1tlt_A           82 -VSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLT  118 (319)
T ss_dssp             -HHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCC
T ss_pred             -HHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence             122344555 55542 223445566788888877665

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=98.14  E-value=3.9e-06  Score=74.64  Aligned_cols=68  Identities=22%  Similarity=0.301  Sum_probs=54.8

Q ss_pred             CCeEEEEccChHHHHHHHHhccC-CCEEE-EEcCCCCChhHHHhcCceecCCHHhhcC--cCCEEEEcCCCC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLT  103 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~-G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDiVvl~lp~~  103 (240)
                      -.+|||||+|.||+..+..++.. +++|. ++|+++...+.+...|+..+.+++++++  +.|+|++++|..
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~   76 (359)
T 3e18_A            5 KYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPND   76 (359)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGG
T ss_pred             cCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcH
Confidence            35899999999999999998876 77865 5687654444455678877789999997  789999999954

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=98.14  E-value=1.2e-05  Score=62.55  Aligned_cols=102  Identities=12%  Similarity=0.082  Sum_probs=73.9

Q ss_pred             CCeEEEEcc----ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360           36 GKTVGTVGC----GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        36 g~~vgIIG~----G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~  111 (240)
                      -++|+|||.    |.+|..+++.|+..|++|+..++..  .+   -.|...+.+++++....|++++++|. +....++.
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~--~~---i~G~~~y~sl~~l~~~vDlvvi~vp~-~~~~~vv~   95 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKY--EE---VLGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYVE   95 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTC--SE---ETTEECBSSGGGCSSCCSEEEECSCH-HHHHHHHH
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCC--Ce---ECCeeccCCHHHcCCCCCEEEEEeCH-HHHHHHHH
Confidence            689999999    7999999999999999977666642  11   14677677899998899999999994 44444443


Q ss_pred             HHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccE
Q 026360          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAG  149 (240)
Q Consensus       112 ~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~g  149 (240)
                       +..+ .....++++.+  .  .++++.+.+++..+.-
T Consensus        96 -~~~~-~gi~~i~~~~g--~--~~~~l~~~a~~~Gi~v  127 (144)
T 2d59_A           96 -QAIK-KGAKVVWFQYN--T--YNREASKKADEAGLII  127 (144)
T ss_dssp             -HHHH-HTCSEEEECTT--C--CCHHHHHHHHHTTCEE
T ss_pred             -HHHH-cCCCEEEECCC--c--hHHHHHHHHHHcCCEE
Confidence             3333 33445665543  2  3788888888877763

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=98.14  E-value=8.3e-06  Score=71.81  Aligned_cols=67  Identities=21%  Similarity=0.340  Sum_probs=53.5

Q ss_pred             CeEEEEccChHHHHHHHHhccC-CCEEE-EEcCCCCChhH-HHhcCceecCCHHhhcC--cCCEEEEcCCCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQL-EKETGAKFEEDLDTMLP--KCDIVVVNTPLT  103 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~-G~~V~-~~d~~~~~~~~-~~~~g~~~~~~l~ell~--~aDiVvl~lp~~  103 (240)
                      .+|||||+|.||+.++..++.. +++++ ++|+++...+. +...|...+.+++++++  +.|+|++++|..
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~   76 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTS   76 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGG
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCch
Confidence            5899999999999999998876 77766 67876543332 44567777789999998  899999999954

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=98.12  E-value=2.3e-06  Score=77.20  Aligned_cols=83  Identities=20%  Similarity=0.315  Sum_probs=68.3

Q ss_pred             CCCeEEEEcc-ChHHHHHHHHhccCCC---EEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcc
Q 026360           35 EGKTVGTVGC-GRIGKLLLQRLKPFNC---NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (240)
Q Consensus        35 ~g~~vgIIG~-G~iG~~~A~~l~~~G~---~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i  110 (240)
                      ...+|.|||. |.+|...++.++++|+   .|.++|++...      .|..    ++ .+.++|+||.++......-.++
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~------~g~~----~~-~i~~aDivIn~vlig~~aP~Lv  281 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETS------RGGP----FD-EIPQADIFINCIYLSKPIAPFT  281 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHT------TCSC----CT-HHHHSSEEEECCCCCSSCCCSC
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccc------cCCc----hh-hHhhCCEEEECcCcCCCCCccc
Confidence            3668999999 9999999999999998   89999975311      1322    22 3569999999998766667889


Q ss_pred             cHHHHccC-CCCCEEEEcC
Q 026360          111 DKDRIAKM-KKGVLIVNNA  128 (240)
Q Consensus       111 ~~~~l~~m-k~gailIN~s  128 (240)
                      +++.++.| |||++|||++
T Consensus       282 t~e~v~~m~k~gsVIVDVA  300 (394)
T 2qrj_A          282 NMEKLNNPNRRLRTVVDVS  300 (394)
T ss_dssp             CHHHHCCTTCCCCEEEETT
T ss_pred             CHHHHhcCcCCCeEEEEEe
Confidence            99999999 9999999997

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=98.11  E-value=6.4e-06  Score=75.49  Aligned_cols=105  Identities=13%  Similarity=0.125  Sum_probs=72.0

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH-------------------hcC-ceecCCHHhhcCcCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-------------------ETG-AKFEEDLDTMLPKCD   94 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~-------------------~~g-~~~~~~l~ell~~aD   94 (240)
                      +-.+|+|||+|-+|..+|..+...|++|+++|.++...+...                   ..| ....++.++.++.||
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ad   99 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATD   99 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTSS
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcCC
Confidence            356999999999999999999999999999998643221110                   112 345568888899999


Q ss_pred             EEEEcCCCChhh-------hhcc--cHHHHccCC---CCCEEEEcCCCcccCHHHHHH
Q 026360           95 IVVVNTPLTEKT-------RGMF--DKDRIAKMK---KGVLIVNNARGAIMDTQAVVD  140 (240)
Q Consensus        95 iVvl~lp~~~~t-------~~~i--~~~~l~~mk---~gailIN~srg~~vd~~aL~~  140 (240)
                      ++++|+| ||..       ..+.  .+..-+.++   ++.++|.-|+-.+=..+.+..
T Consensus       100 ~~~I~Vp-TP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~  156 (444)
T 3vtf_A          100 ATFIAVG-TPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVA  156 (444)
T ss_dssp             EEEECCC-CCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHH
T ss_pred             ceEEEec-CCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHH
Confidence            9999987 3211       1111  122223343   678999999877766666543

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=98.10  E-value=7.7e-06  Score=71.64  Aligned_cols=66  Identities=24%  Similarity=0.409  Sum_probs=52.6

Q ss_pred             CeEEEEccChHHHHHHHHhccC-CCEEE-EEcCCCCChh-HHHhcCceecCCHHhhcC--cCCEEEEcCCCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQ-LEKETGAKFEEDLDTMLP--KCDIVVVNTPLT  103 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~-G~~V~-~~d~~~~~~~-~~~~~g~~~~~~l~ell~--~aDiVvl~lp~~  103 (240)
                      .+|||||+|.||+.++..+... +++++ ++|+++...+ .+...|+. +.+++++++  +.|+|++++|..
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~tp~~   74 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE-VRTIDAIEAAADIDAVVICTPTD   74 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE-ECCHHHHHHCTTCCEEEECSCGG
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC-cCCHHHHhcCCCCCEEEEeCCch
Confidence            5899999999999999999875 78876 6788654333 33456777 779999997  799999999954

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=98.08  E-value=7.6e-06  Score=72.38  Aligned_cols=68  Identities=15%  Similarity=0.301  Sum_probs=53.9

Q ss_pred             CeEEEEccChHHHHHHHHhccC-CCEEE-EEcCCCCChh-HHHhcCceecCCHHhhc--CcCCEEEEcCCCCh
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQ-LEKETGAKFEEDLDTML--PKCDIVVVNTPLTE  104 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~-G~~V~-~~d~~~~~~~-~~~~~g~~~~~~l~ell--~~aDiVvl~lp~~~  104 (240)
                      .+|||||+|.||+..+..++.. +++++ ++|+++...+ .+...|+..+.++++++  .+.|+|++++|...
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~   78 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDK   78 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTS
T ss_pred             ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHH
Confidence            5899999999999999999887 78855 6788654333 23456777678999999  67999999999543

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=98.08  E-value=3.4e-06  Score=76.13  Aligned_cols=92  Identities=14%  Similarity=0.122  Sum_probs=66.3

Q ss_pred             eEEEEccChHHHHHHHHhccCC--------CEEEEEcCCCCC--h---hHHHh--------------cCceecCCHHhhc
Q 026360           38 TVGTVGCGRIGKLLLQRLKPFN--------CNLLYHDRVKMD--P---QLEKE--------------TGAKFEEDLDTML   90 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~~~G--------~~V~~~d~~~~~--~---~~~~~--------------~g~~~~~~l~ell   90 (240)
                      ||+|||.|.+|.++|..|...|        .+|..|.+.+..  .   +....              ..+....++++.+
T Consensus        36 KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~al  115 (391)
T 4fgw_A           36 KVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDSV  115 (391)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHHH
T ss_pred             eEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHHH
Confidence            8999999999999999998654        359999875421  1   11110              1234457899999


Q ss_pred             CcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCc
Q 026360           91 PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus        91 ~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~  131 (240)
                      +++|+|++++| +...+.++ ++....++++..+|+++.|=
T Consensus       116 ~~ad~ii~avP-s~~~r~~l-~~l~~~~~~~~~iv~~~KGi  154 (391)
T 4fgw_A          116 KDVDIIVFNIP-HQFLPRIC-SQLKGHVDSHVRAISCLKGF  154 (391)
T ss_dssp             TTCSEEEECSC-GGGHHHHH-HHHTTTSCTTCEEEECCCSC
T ss_pred             hcCCEEEEECC-hhhhHHHH-HHhccccCCCceeEEecccc
Confidence            99999999999 33333333 34556678899999999884

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=98.08  E-value=8.6e-06  Score=70.96  Aligned_cols=66  Identities=15%  Similarity=0.311  Sum_probs=48.9

Q ss_pred             CeEEEEccChHHHHHHHHhccCC--CEEEEEcCCCCChhHHH-hc---------Ccee-cCCHHhhcCcCCEEEEcCCCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQLEK-ET---------GAKF-EEDLDTMLPKCDIVVVNTPLT  103 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G--~~V~~~d~~~~~~~~~~-~~---------g~~~-~~~l~ell~~aDiVvl~lp~~  103 (240)
                      ++|+|||.|.||..+|..|...|  .+|.++|+++...+... ..         .+.. ..++ +.+++||+|++++|..
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~~   80 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGNI   80 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCCc
Confidence            58999999999999999998878  68999998753222211 11         1222 3466 6789999999999853

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=98.05  E-value=9e-06  Score=71.03  Aligned_cols=107  Identities=13%  Similarity=0.222  Sum_probs=65.9

Q ss_pred             CeEEEEccChHHHHH-HHHhccCCCEEE-EEcCCCCChh-HHHhcCce-ecCCHHhhcC--cCCEEEEcCCCChhhhhcc
Q 026360           37 KTVGTVGCGRIGKLL-LQRLKPFNCNLL-YHDRVKMDPQ-LEKETGAK-FEEDLDTMLP--KCDIVVVNTPLTEKTRGMF  110 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~-A~~l~~~G~~V~-~~d~~~~~~~-~~~~~g~~-~~~~l~ell~--~aDiVvl~lp~~~~t~~~i  110 (240)
                      .+|||||+|.||+.+ +..+...+++++ ++|+++...+ .++..|+. .+.+++++++  ++|+|++++|......   
T Consensus         1 ~~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~---   77 (332)
T 2glx_A            1 NRWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHRE---   77 (332)
T ss_dssp             CEEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGHHH---
T ss_pred             CeEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHhHH---
Confidence            379999999999998 777766778865 6788653332 23445663 5678999987  4999999999432211   


Q ss_pred             cHHHHccCCCCC-EEEEc-CCCcccCHHHHHHHHHhCCcc
Q 026360          111 DKDRIAKMKKGV-LIVNN-ARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       111 ~~~~l~~mk~ga-ilIN~-srg~~vd~~aL~~aL~~g~i~  148 (240)
                        -....++.|. +++.- .....-+.++|.++.++.++.
T Consensus        78 --~~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~~  115 (332)
T 2glx_A           78 --QTLAAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGVV  115 (332)
T ss_dssp             --HHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCC
T ss_pred             --HHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCE
Confidence              1122344554 33331 122333445566666554444

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=98.05  E-value=6.9e-06  Score=72.68  Aligned_cols=68  Identities=29%  Similarity=0.410  Sum_probs=54.1

Q ss_pred             CCeEEEEccChHHHHHHHHhccC--CCEEE-EEcCCCCChh-HHHhcCceecCCHHhhcC--cCCEEEEcCCCC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPF--NCNLL-YHDRVKMDPQ-LEKETGAKFEEDLDTMLP--KCDIVVVNTPLT  103 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~--G~~V~-~~d~~~~~~~-~~~~~g~~~~~~l~ell~--~aDiVvl~lp~~  103 (240)
                      -.+|||||+|.||+..+..++..  +++++ ++|+++...+ .++..|+..+.+++++++  +.|+|++++|..
T Consensus        13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~   86 (354)
T 3q2i_A           13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSG   86 (354)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGG
T ss_pred             cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcH
Confidence            46899999999999999999876  78865 7788654333 334568877789999997  799999999944

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=98.05  E-value=1.6e-05  Score=68.74  Aligned_cols=94  Identities=18%  Similarity=0.185  Sum_probs=64.9

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHH-Hhc-------Cceec--CCHHhhcCcCCEEEEcC
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLE-KET-------GAKFE--EDLDTMLPKCDIVVVNT  100 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~-~~~-------g~~~~--~~l~ell~~aDiVvl~l  100 (240)
                      .++.|+++.|+|.|.+|++++..|...|. +|++++|+..+.+.. +.+       .+...  +++++.++++|+||.++
T Consensus       123 ~~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaT  202 (283)
T 3jyo_A          123 PNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNAT  202 (283)
T ss_dssp             TTCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECS
T ss_pred             cCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECC
Confidence            46889999999999999999999999999 699999975433221 211       12222  37778889999999999


Q ss_pred             CCChhhh--hcccHHHHccCCCCCEEEEcC
Q 026360          101 PLTEKTR--GMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       101 p~~~~t~--~~i~~~~l~~mk~gailIN~s  128 (240)
                      |..-...  ..+.   .+.++++.+++|+.
T Consensus       203 p~Gm~~~~~~pi~---~~~l~~~~~v~Dlv  229 (283)
T 3jyo_A          203 PMGMPAHPGTAFD---VSCLTKDHWVGDVV  229 (283)
T ss_dssp             STTSTTSCSCSSC---GGGCCTTCEEEECC
T ss_pred             CCCCCCCCCCCCC---HHHhCCCCEEEEec
Confidence            9532111  1122   23456676666664

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=98.03  E-value=1.7e-05  Score=67.46  Aligned_cols=101  Identities=17%  Similarity=0.137  Sum_probs=73.5

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCCEE-EEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccH
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNL-LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V-~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~  112 (240)
                      -.-++|+++|+|+||+.+++.  . ++++ .+|+  .+..    ++|+...++++++++++|+|+=|.+  .   ..+.+
T Consensus        10 ~~~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~--~k~g----elgv~a~~d~d~lla~pD~VVe~A~--~---~av~e   75 (253)
T 1j5p_A           10 HHHMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD--RISK----DIPGVVRLDEFQVPSDVSTVVECAS--P---EAVKE   75 (253)
T ss_dssp             -CCCEEEEECCSHHHHHHHHH--S-CCSEEEEEC--SSCC----CCSSSEECSSCCCCTTCCEEEECSC--H---HHHHH
T ss_pred             cccceEEEECcCHHHHHHHhc--C-CcEEEEEEe--cccc----ccCceeeCCHHHHhhCCCEEEECCC--H---HHHHH
Confidence            357899999999999999998  4 7875 5666  2222    2266666789999999999988875  1   22333


Q ss_pred             HHHccCCCCCEEEEcCCCcccCH---HHHHHHHHhCCcc
Q 026360          113 DRIAKMKKGVLIVNNARGAIMDT---QAVVDACSSGHIA  148 (240)
Q Consensus       113 ~~l~~mk~gailIN~srg~~vd~---~aL~~aL~~g~i~  148 (240)
                      ...+.++.|.-+|-+|-|.+.|.   +.|.++.++|+-.
T Consensus        76 ~~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~  114 (253)
T 1j5p_A           76 YSLQILKNPVNYIIISTSAFADEVFRERFFSELKNSPAR  114 (253)
T ss_dssp             HHHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCE
T ss_pred             HHHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCe
Confidence            35566889999999999988887   4566666666554

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=98.01  E-value=3.6e-05  Score=67.52  Aligned_cols=96  Identities=14%  Similarity=0.132  Sum_probs=63.3

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHH----h----cCc--e--ecCC---HHhhcCcCC
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEK----E----TGA--K--FEED---LDTMLPKCD   94 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~----~----~g~--~--~~~~---l~ell~~aD   94 (240)
                      +.++.|+++.|+|.|.+|++++..|...|+ +|++++|++...+.++    +    .+.  .  ..++   +.+.+.++|
T Consensus       149 ~~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aD  228 (315)
T 3tnl_A          149 GHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESV  228 (315)
T ss_dssp             TCCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred             CCCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCC
Confidence            456899999999999999999999999999 8999999732222221    1    121  1  1222   445678999


Q ss_pred             EEEEcCCCChhh---hhcccHHHHccCCCCCEEEEcC
Q 026360           95 IVVVNTPLTEKT---RGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus        95 iVvl~lp~~~~t---~~~i~~~~l~~mk~gailIN~s  128 (240)
                      +||.++|..-..   ...+.  ....++++.+++|+.
T Consensus       229 iIINaTp~Gm~~~~~~~p~~--~~~~l~~~~~V~Dlv  263 (315)
T 3tnl_A          229 IFTNATGVGMKPFEGETLLP--SADMLRPELIVSDVV  263 (315)
T ss_dssp             EEEECSSTTSTTSTTCCSCC--CGGGCCTTCEEEESC
T ss_pred             EEEECccCCCCCCCCCCCCC--cHHHcCCCCEEEEec
Confidence            999999953211   11120  123456777777764

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=98.00  E-value=1.2e-05  Score=69.37  Aligned_cols=96  Identities=18%  Similarity=0.225  Sum_probs=65.7

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHH-HhcCc---------eecCCHHhhcCcCCEEEEcCC
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETGA---------KFEEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~-~~~g~---------~~~~~l~ell~~aDiVvl~lp  101 (240)
                      .++.|+++.|+|.|.+|+++|..|...| +|++++|+....+.. ...+.         ....++.+.+.++|+|+.++|
T Consensus       124 ~~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~ag  202 (287)
T 1nvt_A          124 GRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATP  202 (287)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSC
T ss_pred             CCcCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHHhhCCCCEEEECCC
Confidence            4678999999999999999999999999 999999864322221 11110         011233566788999999998


Q ss_pred             CChhhh---hcc-cHHHHccCCCCCEEEEcCCCc
Q 026360          102 LTEKTR---GMF-DKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       102 ~~~~t~---~~i-~~~~l~~mk~gailIN~srg~  131 (240)
                      ......   ..+ .   .+.++++.+++|++-..
T Consensus       203 ~~~~~~~~~~~~~~---~~~l~~~~~v~Dv~y~p  233 (287)
T 1nvt_A          203 IGMYPNIDVEPIVK---AEKLREDMVVMDLIYNP  233 (287)
T ss_dssp             TTCTTCCSSCCSSC---STTCCSSSEEEECCCSS
T ss_pred             CCCCCCCCCCCCCC---HHHcCCCCEEEEeeeCC
Confidence            543210   012 2   34578899999998643

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=97.99  E-value=1.3e-05  Score=70.64  Aligned_cols=95  Identities=20%  Similarity=0.181  Sum_probs=63.8

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhH-HH-------hc----CceecCCHHhhcCcCCEEEEcC--
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-EK-------ET----GAKFEEDLDTMLPKCDIVVVNT--  100 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~-~~-------~~----g~~~~~~l~ell~~aDiVvl~l--  100 (240)
                      .++|+|||.|.+|..+|..|...|+ +|..||+++...+. ..       ..    .+....++++.+++||+|++++  
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g~   88 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAGL   88 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccCC
Confidence            4699999999999999999998887 99999987643322 11       01    1233468888899999999998  


Q ss_pred             CCChhh------hhc-------ccH---HHHccCCCCCEEEEcCCC
Q 026360          101 PLTEKT------RGM-------FDK---DRIAKMKKGVLIVNNARG  130 (240)
Q Consensus       101 p~~~~t------~~~-------i~~---~~l~~mk~gailIN~srg  130 (240)
                      |..+..      +..       +-.   +.+....|++++++++-.
T Consensus        89 p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP  134 (331)
T 1pzg_A           89 TKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNP  134 (331)
T ss_dssp             SSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred             CCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCc
Confidence            543221      110       011   122333589999988653

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=97.99  E-value=3.9e-06  Score=73.11  Aligned_cols=106  Identities=17%  Similarity=0.304  Sum_probs=66.4

Q ss_pred             CeEEEEccChHHHHHHHHhccC-CCEE-EEEcCCCCChhHHHhcCceecCCHHhhcC--cCCEEEEcCCCChhhhhcccH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPF-NCNL-LYHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMFDK  112 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~-G~~V-~~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDiVvl~lp~~~~t~~~i~~  112 (240)
                      .+|||||+|.||+.+++.+... +.++ .++|+++...+.+.+. +....+++++++  ++|+|++++|......  +  
T Consensus        11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~--~--   85 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPG-CVIESDWRSVVSAPEVEAVIIATPPATHAE--I--   85 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTT-CEEESSTHHHHTCTTCCEEEEESCGGGHHH--H--
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhh-CcccCCHHHHhhCCCCCEEEEeCChHHHHH--H--
Confidence            5899999999999999999875 6775 4788764322211111 445568999986  7999999999432211  1  


Q ss_pred             HHHccCCCCC-EEEEc-CCCcccCHHHHHHHHHhCCcc
Q 026360          113 DRIAKMKKGV-LIVNN-ARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       113 ~~l~~mk~ga-ilIN~-srg~~vd~~aL~~aL~~g~i~  148 (240)
                       ....++.|. +++.- ..-.+-+.++|.++.++.++.
T Consensus        86 -~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~  122 (315)
T 3c1a_A           86 -TLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGVM  122 (315)
T ss_dssp             -HHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCC
T ss_pred             -HHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCE
Confidence             122345554 45441 222334456677777665544

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=97.99  E-value=1.5e-05  Score=70.05  Aligned_cols=107  Identities=14%  Similarity=0.166  Sum_probs=68.3

Q ss_pred             CeEEEEccChHHHHHHHHhc-c-CCCEE-EEEcCCCCChhH-HHhcCc-eecCCHHhhcC--cCCEEEEcCCCChhhhhc
Q 026360           37 KTVGTVGCGRIGKLLLQRLK-P-FNCNL-LYHDRVKMDPQL-EKETGA-KFEEDLDTMLP--KCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~-~-~G~~V-~~~d~~~~~~~~-~~~~g~-~~~~~l~ell~--~aDiVvl~lp~~~~t~~~  109 (240)
                      .+|||||+|.||+..++.++ . -++++ .++|+++...+. ++..|+ ..+.+++++++  ++|+|++++|......  
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~--   86 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFHPE--   86 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGHHH--
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhHHH--
Confidence            58999999999999999987 5 47775 467876533332 344576 55679999986  6999999999432211  


Q ss_pred             ccHHHHccCCCCCEE-EEc-CCCcccCHHHHHHHHHhC-Ccc
Q 026360          110 FDKDRIAKMKKGVLI-VNN-ARGAIMDTQAVVDACSSG-HIA  148 (240)
Q Consensus       110 i~~~~l~~mk~gail-IN~-srg~~vd~~aL~~aL~~g-~i~  148 (240)
                         .....++.|..+ +.- ....+-+.++|.++.++. ++.
T Consensus        87 ---~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~  125 (346)
T 3cea_A           87 ---MTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQI  125 (346)
T ss_dssp             ---HHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSC
T ss_pred             ---HHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCe
Confidence               122334556533 321 112233344577777776 655

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.99  E-value=7.3e-06  Score=70.90  Aligned_cols=93  Identities=20%  Similarity=0.188  Sum_probs=61.4

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHH-HhcCceecCCHHhhcCcCCEEEEcCCCC--hhh
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLE-KETGAKFEEDLDTMLPKCDIVVVNTPLT--EKT  106 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~-~~~g~~~~~~l~ell~~aDiVvl~lp~~--~~t  106 (240)
                      +.++.|+++.|+|.|.+|++++..|...|. +|++++|+..+.+.. ..++....+++++ + ++|+||.++|..  +..
T Consensus       117 ~~~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~Gm~~~~  194 (282)
T 3fbt_A          117 RVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKGMYPKE  194 (282)
T ss_dssp             TCCCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTTSTTST
T ss_pred             CCCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccCccCCC
Confidence            446789999999999999999999999998 899999875332221 1111112223444 4 899999999853  111


Q ss_pred             h-hcccHHHHccCCCCCEEEEcC
Q 026360          107 R-GMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       107 ~-~~i~~~~l~~mk~gailIN~s  128 (240)
                      . ..+..+.   ++++.+++|+.
T Consensus       195 ~~~pi~~~~---l~~~~~v~Dlv  214 (282)
T 3fbt_A          195 GESPVDKEV---VAKFSSAVDLI  214 (282)
T ss_dssp             TCCSSCHHH---HTTCSEEEESC
T ss_pred             ccCCCCHHH---cCCCCEEEEEe
Confidence            1 1234333   35666666664

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.98  E-value=1.3e-05  Score=62.28  Aligned_cols=91  Identities=12%  Similarity=0.068  Sum_probs=58.7

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCC-ChhHHH---hcCceec-------CCHHhh-cCcCCEEEEcCCCC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM-DPQLEK---ETGAKFE-------EDLDTM-LPKCDIVVVNTPLT  103 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~-~~~~~~---~~g~~~~-------~~l~el-l~~aDiVvl~lp~~  103 (240)
                      .+++.|+|+|.+|+.+++.|...|++|+++|+++. ..+...   ..|+...       ..++++ ++++|.|+++++..
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d   82 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDND   82 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCCh
Confidence            56899999999999999999999999999998631 111111   1233321       123344 78999999999865


Q ss_pred             hhhhhcccHHHHccCCCCCEEEEcC
Q 026360          104 EKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       104 ~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      +.+  ..-....+.+.+...+|...
T Consensus        83 ~~n--~~~~~~a~~~~~~~~ii~~~  105 (153)
T 1id1_A           83 ADN--AFVVLSAKDMSSDVKTVLAV  105 (153)
T ss_dssp             HHH--HHHHHHHHHHTSSSCEEEEC
T ss_pred             HHH--HHHHHHHHHHCCCCEEEEEE
Confidence            433  22234455554544455443

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=97.97  E-value=1e-05  Score=70.72  Aligned_cols=65  Identities=23%  Similarity=0.304  Sum_probs=48.3

Q ss_pred             CeEEEEccChHHHHHHHHhcc--CCCEEEEEcCCCCChhHHH---hc-------C--ceecCCHHhhcCcCCEEEEcCCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKP--FNCNLLYHDRVKMDPQLEK---ET-------G--AKFEEDLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~--~G~~V~~~d~~~~~~~~~~---~~-------g--~~~~~~l~ell~~aDiVvl~lp~  102 (240)
                      ++|+|||.|.+|..+|..|..  .|.+|..+|+++...+...   ..       .  +....+.++ +++||+|++++|.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~   79 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGL   79 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCC
Confidence            489999999999999999886  5889999999764333211   11       1  223356766 8999999999974

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=97.97  E-value=1.8e-05  Score=69.35  Aligned_cols=102  Identities=16%  Similarity=0.159  Sum_probs=67.7

Q ss_pred             CeEEEEccChHHHHHHHHhccC-CCEE-EEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPF-NCNL-LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~-G~~V-~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~  114 (240)
                      .+|||||+|+||+.+++.+... ++++ .++|+++.. .. . .|+...+++++++.++|+|++++|.....     ...
T Consensus         4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~-~~-~-~gv~~~~d~~~ll~~~DvViiatp~~~h~-----~~~   75 (320)
T 1f06_A            4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL-DT-K-TPVFDVADVDKHADDVDVLFLCMGSATDI-----PEQ   75 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC-SS-S-SCEEEGGGGGGTTTTCSEEEECSCTTTHH-----HHH
T ss_pred             CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH-hh-c-CCCceeCCHHHHhcCCCEEEEcCCcHHHH-----HHH
Confidence            4899999999999999998876 6774 577876433 21 1 46655668888888899999999843221     223


Q ss_pred             HccCCCCCEEEEcCCCcc-c-CH-HHHHHHHHhCC
Q 026360          115 IAKMKKGVLIVNNARGAI-M-DT-QAVVDACSSGH  146 (240)
Q Consensus       115 l~~mk~gailIN~srg~~-v-d~-~aL~~aL~~g~  146 (240)
                      ...++.|.-+|...-..+ + +. +.|.++.+++.
T Consensus        76 ~~al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~  110 (320)
T 1f06_A           76 APKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAG  110 (320)
T ss_dssp             HHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCEEEECCCCcCCHHHHHHHHHHHHHhCC
Confidence            344566776665544332 2 22 45666666654

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=97.95  E-value=1.7e-05  Score=70.17  Aligned_cols=69  Identities=22%  Similarity=0.260  Sum_probs=53.1

Q ss_pred             CCCeEEEEccChHHH-HHHHHhccC-CCEEE-EEcCCCCChh-HHHhcCceecCCHHhhcC--cCCEEEEcCCCC
Q 026360           35 EGKTVGTVGCGRIGK-LLLQRLKPF-NCNLL-YHDRVKMDPQ-LEKETGAKFEEDLDTMLP--KCDIVVVNTPLT  103 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~-~~A~~l~~~-G~~V~-~~d~~~~~~~-~~~~~g~~~~~~l~ell~--~aDiVvl~lp~~  103 (240)
                      .-.+|||||+|.||+ .++..++.. +++|+ ++|+++...+ .++..|+..+.+++++++  +.|+|++++|..
T Consensus        26 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~  100 (350)
T 3rc1_A           26 NPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAV  100 (350)
T ss_dssp             CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGG
T ss_pred             CceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcH
Confidence            456899999999998 788888876 77865 6787653333 334568876689999997  589999999944

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=97.95  E-value=1.8e-05  Score=69.35  Aligned_cols=93  Identities=22%  Similarity=0.306  Sum_probs=60.1

Q ss_pred             CeEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCChhHHH-hc--------Cce-ecCCHHhhcCcCCEEEEcCCCCh
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEK-ET--------GAK-FEEDLDTMLPKCDIVVVNTPLTE  104 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~-~~--------g~~-~~~~l~ell~~aDiVvl~lp~~~  104 (240)
                      ++|+|||.|.||..+|..|...|+  +|.++|+++...+... ..        ... ...+ .+.+++||+|++++|...
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~aDvViiav~~~~   79 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YADLKGSDVVIVAAGVPQ   79 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGGGTTCSEEEECCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHHhCCCCEEEEccCCCC
Confidence            489999999999999999988888  9999998643222211 10        111 1234 356789999999998533


Q ss_pred             h---hh--------hcccHHH---HccCCCCCEEEEcCCCc
Q 026360          105 K---TR--------GMFDKDR---IAKMKKGVLIVNNARGA  131 (240)
Q Consensus       105 ~---t~--------~~i~~~~---l~~mk~gailIN~srg~  131 (240)
                      .   ++        .++ .+.   +....|++++|+++-+.
T Consensus        80 ~~g~~r~dl~~~n~~i~-~~i~~~i~~~~~~~~ii~~tNp~  119 (319)
T 1a5z_A           80 KPGETRLQLLGRNARVM-KEIARNVSKYAPDSIVIVVTNPV  119 (319)
T ss_dssp             CSSCCHHHHHHHHHHHH-HHHHHHHHHHCTTCEEEECSSSH
T ss_pred             CCCCCHHHHHHHHHHHH-HHHHHHHHhhCCCeEEEEeCCcH
Confidence            1   00        011 222   22225788999886543

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=97.94  E-value=2.4e-05  Score=68.86  Aligned_cols=67  Identities=24%  Similarity=0.387  Sum_probs=51.8

Q ss_pred             CeEEEEccChHHHHHHHHhccC-CCEEE-EEcCCCCChh-HHHhcCc-eecCCHHhhcC--cCCEEEEcCCCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQ-LEKETGA-KFEEDLDTMLP--KCDIVVVNTPLT  103 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~-G~~V~-~~d~~~~~~~-~~~~~g~-~~~~~l~ell~--~aDiVvl~lp~~  103 (240)
                      .+|||||+|.||+..+..+... +++++ ++|+++...+ .++..|+ ..+.+++++++  +.|+|++++|..
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~   75 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTN   75 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGG
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCc
Confidence            4899999999999999999875 67766 6788654333 3344565 35679999998  799999999943

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=97.94  E-value=2.9e-05  Score=68.40  Aligned_cols=92  Identities=16%  Similarity=0.283  Sum_probs=61.2

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHH-----Hh-------cCceecCCHHhhcCcCCEEEEcC--
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLE-----KE-------TGAKFEEDLDTMLPKCDIVVVNT--  100 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~-----~~-------~g~~~~~~l~ell~~aDiVvl~l--  100 (240)
                      .++|+|||.|.+|..+|..+...|+ +|..||+++...+..     ..       ..+....++ +.+++||+|++++  
T Consensus        14 ~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg~   92 (328)
T 2hjr_A           14 RKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAGV   92 (328)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCCC
Confidence            3699999999999999999998898 999999976433311     00       013333567 7789999999998  


Q ss_pred             CCChh---------hhhc---ccHHHHccCCCCCEEEEcCC
Q 026360          101 PLTEK---------TRGM---FDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       101 p~~~~---------t~~~---i~~~~l~~mk~gailIN~sr  129 (240)
                      |..+.         +..+   +.++ +....|++++++++.
T Consensus        93 p~k~g~tr~dl~~~n~~i~~~i~~~-i~~~~p~a~viv~tN  132 (328)
T 2hjr_A           93 PRKPNMTRSDLLTVNAKIVGSVAEN-VGKYCPNAFVICITN  132 (328)
T ss_dssp             CCCTTCCSGGGHHHHHHHHHHHHHH-HHHHCTTCEEEECCS
T ss_pred             CCCCCCchhhHHhhhHHHHHHHHHH-HHHHCCCeEEEEecC
Confidence            43211         1111   1222 223348899988765

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=97.94  E-value=2.4e-05  Score=68.30  Aligned_cols=107  Identities=14%  Similarity=0.204  Sum_probs=66.6

Q ss_pred             CeEEEEccChHHH-HHHHHhccC-CCEEEEEcCCCCChh-HHHhcCcee-cCCHHhhc-CcCCEEEEcCCCChhhhhccc
Q 026360           37 KTVGTVGCGRIGK-LLLQRLKPF-NCNLLYHDRVKMDPQ-LEKETGAKF-EEDLDTML-PKCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        37 ~~vgIIG~G~iG~-~~A~~l~~~-G~~V~~~d~~~~~~~-~~~~~g~~~-~~~l~ell-~~aDiVvl~lp~~~~t~~~i~  111 (240)
                      .+|||||+|.||+ .+++.+... +.+++++|+++...+ .++..|+.. ..+..+++ .++|+|++++|......  +-
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h~~--~~   80 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHST--LA   80 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHH--HH
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhHHH--HH
Confidence            4799999999998 488888764 778778898754333 234456643 33445555 68999999999332211  11


Q ss_pred             HHHHccCCCCC-EEEEc-CCCcccCHHHHHHHHHhCCcc
Q 026360          112 KDRIAKMKKGV-LIVNN-ARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       112 ~~~l~~mk~ga-ilIN~-srg~~vd~~aL~~aL~~g~i~  148 (240)
                         ...++.|. +++.- ..-.+-+.++|.++.++.++.
T Consensus        81 ---~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~  116 (323)
T 1xea_A           81 ---AFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQP  116 (323)
T ss_dssp             ---HHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             ---HHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCe
Confidence               12334453 55542 122334556678888776665

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.93  E-value=1.5e-05  Score=65.68  Aligned_cols=91  Identities=18%  Similarity=0.114  Sum_probs=59.5

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHH-HhcCceec----CC---HHhh-cCcCCEEEEcCCCChhhh
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETGAKFE----ED---LDTM-LPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~-~~~g~~~~----~~---l~el-l~~aDiVvl~lp~~~~t~  107 (240)
                      ++|.|+|+|.+|+.+|+.|...|++|+++|+++...+.. ...++...    .+   ++++ ++++|+|++++|....+ 
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n-   79 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEVN-   79 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHHH-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcHHH-
Confidence            479999999999999999999999999999875433332 23454321    12   3333 67899999999865433 


Q ss_pred             hcccHHHHccCCCCCEEEEcCC
Q 026360          108 GMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~sr  129 (240)
                       .+-....+.+.+...+|-..+
T Consensus        80 -~~~~~~a~~~~~~~~iia~~~  100 (218)
T 3l4b_C           80 -LFIAQLVMKDFGVKRVVSLVN  100 (218)
T ss_dssp             -HHHHHHHHHTSCCCEEEECCC
T ss_pred             -HHHHHHHHHHcCCCeEEEEEe
Confidence             222333444444455554433

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=97.92  E-value=1.7e-05  Score=69.63  Aligned_cols=68  Identities=15%  Similarity=0.130  Sum_probs=52.7

Q ss_pred             CCeEEEEccChHHHHHHHHhccC-CCEEE-EEcCCCCChh-HHHhcCc-eecCCHHhhcC--cCCEEEEcCCCC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQ-LEKETGA-KFEEDLDTMLP--KCDIVVVNTPLT  103 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~-G~~V~-~~d~~~~~~~-~~~~~g~-~~~~~l~ell~--~aDiVvl~lp~~  103 (240)
                      -.+|||||+|.||+.+++.++.. +++|+ ++|+++...+ .+...|+ ..+.+++++++  +.|+|++++|..
T Consensus         5 ~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~   78 (330)
T 3e9m_A            5 KIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQ   78 (330)
T ss_dssp             CEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGG
T ss_pred             eEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCH
Confidence            36899999999999999999875 67766 5687654333 3345576 45679999997  799999999954

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=97.90  E-value=3.8e-05  Score=65.98  Aligned_cols=90  Identities=20%  Similarity=0.186  Sum_probs=59.7

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChh-HHHhcCceecCCHHhhcCcCCEEEEcCCCChhhh-----
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-LEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTR-----  107 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~-~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~-----  107 (240)
                      .++++.|+|.|.+|++++..|...|. +|++++|+..+.+ .+..++.....++.  +.++|+|+.++|......     
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~gm~~~~~~~~  195 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIGMKGGKEEMD  195 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTTCTTSTTTTS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCCccCccccCC
Confidence            57899999999999999999999998 7999999753322 33334443322222  468999999999643211     


Q ss_pred             hcccHHHHccCCCCCEEEEcCC
Q 026360          108 GMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~sr  129 (240)
                      ..+..+.   ++++.+++|+.-
T Consensus       196 ~~~~~~~---l~~~~~v~DlvY  214 (271)
T 1npy_A          196 LAFPKAF---IDNASVAFDVVA  214 (271)
T ss_dssp             CSSCHHH---HHHCSEEEECCC
T ss_pred             CCCCHHH---cCCCCEEEEeec
Confidence            1123222   345666777654

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=97.89  E-value=3.7e-05  Score=67.30  Aligned_cols=68  Identities=16%  Similarity=0.227  Sum_probs=50.7

Q ss_pred             CCeEEEEccChHHHHHHHHhccC-CCEEE-EEcCCCCChh-HHHhcCce-ecCCHHhhcC--cCCEEEEcCCCC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQ-LEKETGAK-FEEDLDTMLP--KCDIVVVNTPLT  103 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~-G~~V~-~~d~~~~~~~-~~~~~g~~-~~~~l~ell~--~aDiVvl~lp~~  103 (240)
                      -.++||||+|.||+.++..++.. +.+++ ++|+++...+ .++..|+. .+.+++++++  +.|+|++++|..
T Consensus         5 ~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~   78 (329)
T 3evn_A            5 KVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQ   78 (329)
T ss_dssp             CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGG
T ss_pred             ceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcH
Confidence            35899999999999999988765 55655 6688765443 34445663 5679999998  799999999943

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=97.88  E-value=5.8e-05  Score=66.13  Aligned_cols=67  Identities=9%  Similarity=0.061  Sum_probs=51.2

Q ss_pred             CeEEEEccChHHH-HHHHHhccCCCEE-EEEcCCCCChhH-HHhc-CceecCCHHhhcC--cCCEEEEcCCCC
Q 026360           37 KTVGTVGCGRIGK-LLLQRLKPFNCNL-LYHDRVKMDPQL-EKET-GAKFEEDLDTMLP--KCDIVVVNTPLT  103 (240)
Q Consensus        37 ~~vgIIG~G~iG~-~~A~~l~~~G~~V-~~~d~~~~~~~~-~~~~-g~~~~~~l~ell~--~aDiVvl~lp~~  103 (240)
                      .+|||||+|.+|. .++..++..|++| .++|+++...+. ++.. +...+.+++++++  +.|+|++++|..
T Consensus         5 ~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~   77 (336)
T 2p2s_A            5 IRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPC   77 (336)
T ss_dssp             CEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGG
T ss_pred             cEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChh
Confidence            5899999999996 6777776668885 577887655443 3445 4566789999997  689999999943

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=97.86  E-value=2.3e-05  Score=68.24  Aligned_cols=102  Identities=19%  Similarity=0.294  Sum_probs=60.9

Q ss_pred             CCeEEEEccChHHHHHHHHhcc-CCCEEE-EEcCCCCChhHHHhcCce--ecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKP-FNCNLL-YHDRVKMDPQLEKETGAK--FEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~-~G~~V~-~~d~~~~~~~~~~~~g~~--~~~~l~ell~~aDiVvl~lp~~~~t~~~i~  111 (240)
                      -.+|||||+|.||+.+++.++. -++++. ++|+++...+.   .|+.  ..+++.+. .++|+|++|+|.....     
T Consensus         9 ~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~---~g~~~~~~~~l~~~-~~~DvViiatp~~~h~-----   79 (304)
T 3bio_A            9 KIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF---ELQPFRVVSDIEQL-ESVDVALVCSPSREVE-----   79 (304)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC----------CCTTSCEESSGGGS-SSCCEEEECSCHHHHH-----
T ss_pred             CCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH---cCCCcCCHHHHHhC-CCCCEEEECCCchhhH-----
Confidence            3589999999999999999886 477876 67886543322   4543  23455555 7899999999932221     


Q ss_pred             HHHHccCCCCCEEEEcCC--C-cccCHHHHHHHHHhCC
Q 026360          112 KDRIAKMKKGVLIVNNAR--G-AIMDTQAVVDACSSGH  146 (240)
Q Consensus       112 ~~~l~~mk~gailIN~sr--g-~~vd~~aL~~aL~~g~  146 (240)
                      +.....++.|.-+++..-  + ...+.+.|.++.++.+
T Consensus        80 ~~~~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g  117 (304)
T 3bio_A           80 RTALEILKKGICTADSFDIHDGILALRRSLGDAAGKSG  117 (304)
T ss_dssp             HHHHHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCC
Confidence            122233555666666432  1 2233455666666544

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=97.86  E-value=1.3e-05  Score=69.95  Aligned_cols=113  Identities=16%  Similarity=0.246  Sum_probs=67.6

Q ss_pred             CeEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCChhH-HHhc--C------cee-cCCHHhhcCcCCEEEEcCCCCh
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQL-EKET--G------AKF-EEDLDTMLPKCDIVVVNTPLTE  104 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~~-~~~~--g------~~~-~~~l~ell~~aDiVvl~lp~~~  104 (240)
                      ++|+|||.|.+|..+|..+...|+  +|..+|+++...+. ....  .      ... ..+ .+.+++||+|+++++...
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~-~~a~~~aDvVIi~~~~~~   79 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGG-HSELADAQVVILTAGANQ   79 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEEC-GGGGTTCSEEEECC----
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECC-HHHhCCCCEEEEcCCCCC
Confidence            489999999999999999998898  99999986422211 1111  1      111 124 356889999999995322


Q ss_pred             h-----------hhhccc--HHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEE
Q 026360          105 K-----------TRGMFD--KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGY  150 (240)
Q Consensus       105 ~-----------t~~~i~--~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga  150 (240)
                      .           +..++.  .+.+....|++++++++.+.=+....+.+.....++.|.
T Consensus        80 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~~~~~~~~rviG~  138 (304)
T 2v6b_A           80 KPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLATQLAPGQPVIGS  138 (304)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHHHHHHHHHSCSSCEEEC
T ss_pred             CCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHhCChhcEEeC
Confidence            1           111110  022333368999999776543434444444444566554

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=97.84  E-value=5.1e-05  Score=64.19  Aligned_cols=82  Identities=7%  Similarity=0.048  Sum_probs=57.5

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEE-EEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  115 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l  115 (240)
                      ++|+|+|+|+||+.+++.+...+.++. ++|+++..     ..|+...+++++++ ++|+++-.++. +.+.     +.+
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~-----~~gv~v~~dl~~l~-~~DVvIDft~p-~a~~-----~~~   71 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA-----TTPYQQYQHIADVK-GADVAIDFSNP-NLLF-----PLL   71 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-------CCSCBCSCTTTCT-TCSEEEECSCH-HHHH-----HHH
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc-----cCCCceeCCHHHHh-CCCEEEEeCCh-HHHH-----HHH
Confidence            689999999999999999987755755 47876531     35777677899988 99998844430 1221     233


Q ss_pred             ccCCCCCEEEEcCCCc
Q 026360          116 AKMKKGVLIVNNARGA  131 (240)
Q Consensus       116 ~~mk~gailIN~srg~  131 (240)
                      . ++.|.-+|....|-
T Consensus        72 ~-l~~g~~vVigTTG~   86 (243)
T 3qy9_A           72 D-EDFHLPLVVATTGE   86 (243)
T ss_dssp             T-SCCCCCEEECCCSS
T ss_pred             H-HhcCCceEeCCCCC
Confidence            4 77777777666663

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=97.83  E-value=3.7e-05  Score=70.31  Aligned_cols=111  Identities=17%  Similarity=0.151  Sum_probs=78.8

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCC---EEEEEc----CC--CCChhH---HH----h----cCce-ecCCHHhh
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC---NLLYHD----RV--KMDPQL---EK----E----TGAK-FEEDLDTM   89 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~---~V~~~d----~~--~~~~~~---~~----~----~g~~-~~~~l~el   89 (240)
                      +.++.++++.|+|.|..|++++..|...|.   +|+++|    |+  ....+.   ..    .    .+.. ...++.+.
T Consensus       181 g~~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~  260 (439)
T 2dvm_A          181 GKKISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEA  260 (439)
T ss_dssp             TCCTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHH
T ss_pred             CCCccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHH
Confidence            346889999999999999999999999998   799999    76  111111   11    1    1110 13468899


Q ss_pred             cCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCC
Q 026360           90 LPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH  146 (240)
Q Consensus        90 l~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~  146 (240)
                      ++++|+++.++|..+   +++..+.++.|++++++++++...  .+.-+.+|.+.|.
T Consensus       261 l~~aDVlInaT~~~~---G~~~~e~v~~m~~~~iVfDLynP~--~t~~~~~A~~~G~  312 (439)
T 2dvm_A          261 LKDADVLISFTRPGP---GVIKPQWIEKMNEDAIVFPLANPV--PEILPEEAKKAGA  312 (439)
T ss_dssp             HTTCSEEEECSCCCS---SSSCHHHHTTSCTTCEEEECCSSS--CSSCHHHHHHHTC
T ss_pred             hccCCEEEEcCCCcc---CCCChHHHHhcCCCCEEEECCCCC--CcchHHHHHHcCC
Confidence            999999999998421   455566778899999999995433  4555555555554

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=97.83  E-value=4.5e-05  Score=67.67  Aligned_cols=69  Identities=23%  Similarity=0.279  Sum_probs=53.3

Q ss_pred             CCCeEEEEccChHHHHHHHHhc-c-CCCEEE-EEcCCCCChhH-HHhcC--ceecCCHHhhcC--cCCEEEEcCCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLK-P-FNCNLL-YHDRVKMDPQL-EKETG--AKFEEDLDTMLP--KCDIVVVNTPLT  103 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~-~-~G~~V~-~~d~~~~~~~~-~~~~g--~~~~~~l~ell~--~aDiVvl~lp~~  103 (240)
                      .-.+|||||+|.||+..+..+. . -+++++ ++|+++...+. ++..|  ...+.+++++++  +.|+|++++|..
T Consensus        22 ~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~   98 (357)
T 3ec7_A           22 MTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNE   98 (357)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGG
T ss_pred             CeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcH
Confidence            3468999999999999999987 4 477865 67887654433 44556  566789999987  489999999954

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=97.83  E-value=2.9e-05  Score=68.31  Aligned_cols=67  Identities=22%  Similarity=0.318  Sum_probs=51.7

Q ss_pred             CeEEEEccChHHHHHHHHhc-c-CCCEEE-EEcCCCCChh-HHHhcC--ceecCCHHhhcCc--CCEEEEcCCCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLK-P-FNCNLL-YHDRVKMDPQ-LEKETG--AKFEEDLDTMLPK--CDIVVVNTPLT  103 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~-~-~G~~V~-~~d~~~~~~~-~~~~~g--~~~~~~l~ell~~--aDiVvl~lp~~  103 (240)
                      .+|||||+|.||+..+..++ . -+++++ ++|+++...+ .++..|  ...++++++++++  .|+|++++|..
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~   77 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGP   77 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGG
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCch
Confidence            48999999999999999988 5 477865 6787654333 334556  5667899999976  99999999944

>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=97.83  E-value=0.00012  Score=63.98  Aligned_cols=96  Identities=16%  Similarity=0.195  Sum_probs=71.1

Q ss_pred             ccCCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCC--hhH-HHhc--CceecCCHHhhcCcCCEEEEcC----CC
Q 026360           33 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMD--PQL-EKET--GAKFEEDLDTMLPKCDIVVVNT----PL  102 (240)
Q Consensus        33 ~l~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~--~~~-~~~~--g~~~~~~l~ell~~aDiVvl~l----p~  102 (240)
                      .+.|++|+++| .+++.++++..+..+|++|.+..|....  .+. .+..  ++....++++.++++|+|..-.    ..
T Consensus       151 ~l~glkva~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt~~w~smg~  230 (309)
T 4f2g_A          151 PIRGKTVAWVGDANNMLYTWIQAARILDFKLQLSTPPGYALDAKLVDAESAPFYQVFDDPNEACKGADLVTTDVWTSMGF  230 (309)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCGGGCCCGGGSCGGGGGGEEECSSHHHHTTTCSEEEECCC-----
T ss_pred             CCCCCEEEEECCCcchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHcCCeEEEEcCHHHHhcCCCEEEecccccCcc
Confidence            48999999999 6799999999999999999999875321  111 1122  3456689999999999998754    11


Q ss_pred             Ch--------hhhhcccHHHHccCCCCCEEEEcC
Q 026360          103 TE--------KTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       103 ~~--------~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      ..        -...-++.+.++.+|++++|..+.
T Consensus       231 e~~~~~r~~~~~~y~v~~~~l~~a~~~ai~mH~l  264 (309)
T 4f2g_A          231 EAENEARKRAFADWCVDEEMMSHANSDALFMHCL  264 (309)
T ss_dssp             -------CCSGGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             hhhHHHHHHHhcCceeCHHHHHhcCCCeEEECCC
Confidence            00        012447889999999999998875

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.82  E-value=4.6e-05  Score=66.77  Aligned_cols=73  Identities=19%  Similarity=0.186  Sum_probs=53.4

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHH----Hh----cCc--e--ecCCH---HhhcCcCC
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLE----KE----TGA--K--FEEDL---DTMLPKCD   94 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~----~~----~g~--~--~~~~l---~ell~~aD   94 (240)
                      +.++.|+++.|+|.|.+|++++..|...|. +|++++|+....+.+    ++    .+.  .  ...++   .+.+.++|
T Consensus       143 ~~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~D  222 (312)
T 3t4e_A          143 GFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASAD  222 (312)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCS
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCce
Confidence            346889999999999999999999999998 799999973322211    11    121  1  12343   45678899


Q ss_pred             EEEEcCCCC
Q 026360           95 IVVVNTPLT  103 (240)
Q Consensus        95 iVvl~lp~~  103 (240)
                      +||.++|..
T Consensus       223 iIINaTp~G  231 (312)
T 3t4e_A          223 ILTNGTKVG  231 (312)
T ss_dssp             EEEECSSTT
T ss_pred             EEEECCcCC
Confidence            999999954

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.81  E-value=1.8e-05  Score=72.00  Aligned_cols=92  Identities=15%  Similarity=0.204  Sum_probs=64.9

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec----CCH---Hhh-cCcCCEEEEcCCCChhhh
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDL---DTM-LPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l---~el-l~~aDiVvl~lp~~~~t~  107 (240)
                      +.+|.|+|+|.+|+.+|+.|...|.+|+++|.++...+.+...|+..+    .+.   +++ +.++|+|+++++..+.+.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n~   83 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNL   83 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHHH
Confidence            457999999999999999999999999999987655555556665321    222   233 678999999998654433


Q ss_pred             hcccHHHHccCCCCCEEEEcCC
Q 026360          108 GMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~sr  129 (240)
                      .+  ....+.+.|+..+|--++
T Consensus        84 ~i--~~~ar~~~p~~~Iiara~  103 (413)
T 3l9w_A           84 QL--TEMVKEHFPHLQIIARAR  103 (413)
T ss_dssp             HH--HHHHHHHCTTCEEEEEES
T ss_pred             HH--HHHHHHhCCCCeEEEEEC
Confidence            32  345556677755554443

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=97.80  E-value=4.9e-05  Score=66.95  Aligned_cols=67  Identities=21%  Similarity=0.219  Sum_probs=49.0

Q ss_pred             CeEEEEccChHHHH-HHH-Hhcc-CCCEEE-EEcCCCCChhHHHh-cCceecCCHHhhcCc--CCEEEEcCCCC
Q 026360           37 KTVGTVGCGRIGKL-LLQ-RLKP-FNCNLL-YHDRVKMDPQLEKE-TGAKFEEDLDTMLPK--CDIVVVNTPLT  103 (240)
Q Consensus        37 ~~vgIIG~G~iG~~-~A~-~l~~-~G~~V~-~~d~~~~~~~~~~~-~g~~~~~~l~ell~~--aDiVvl~lp~~  103 (240)
                      .+|||||+|.||+. .+. .+.. -+++|. ++|+++........ .++..++++++++++  .|+|++++|..
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~   76 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHAD   76 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGG
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChH
Confidence            47999999999996 555 4343 477866 77887644433333 356667899999986  89999999954

>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}

Probab=97.78  E-value=0.00021  Score=63.21  Aligned_cols=96  Identities=15%  Similarity=0.206  Sum_probs=72.2

Q ss_pred             ccCCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCCh-hH--------HHhcC--ceecCCHHhhcCcCCEEEEcC
Q 026360           33 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QL--------EKETG--AKFEEDLDTMLPKCDIVVVNT  100 (240)
Q Consensus        33 ~l~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~-~~--------~~~~g--~~~~~~l~ell~~aDiVvl~l  100 (240)
                      .+.|++|++|| .+++.++++..+..+|++|.+..|....+ +.        ++..|  +....+++++++++|+|..-.
T Consensus       176 ~l~glkva~vGD~~nva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDVvyt~~  255 (340)
T 4ep1_A          176 TFKGIKLAYVGDGNNVCHSLLLASAKVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPELAVNEADFIYTDV  255 (340)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEECCHHHHhCCCCEEEecC
Confidence            48999999999 57899999999999999999998864322 21        12345  455679999999999998765


Q ss_pred             CCCh------h-----hhhcccHHHHccCCCCCEEEEcC
Q 026360          101 PLTE------K-----TRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       101 p~~~------~-----t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      =...      +     ...-++.+.++.+|++++|..+.
T Consensus       256 w~smg~e~~~~~~~~~~~y~vt~ell~~ak~dai~MHcL  294 (340)
T 4ep1_A          256 WMSMGQEGEEEKYTLFQPYQINKELVKHAKQTYHFLHCL  294 (340)
T ss_dssp             C------CHHHHHHHHGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             ccCCCCCchHHHHHHhccccCCHHHHHhcCCCcEEECCC
Confidence            2211      1     12357889999999999998876

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=97.76  E-value=0.00014  Score=70.79  Aligned_cols=116  Identities=13%  Similarity=0.175  Sum_probs=82.7

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh---------------c-------CceecCCHHhhcCcC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE---------------T-------GAKFEEDLDTMLPKC   93 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~---------------~-------g~~~~~~l~ell~~a   93 (240)
                      =++|||||.|.||..+|..+...|++|+.+|+++...+....               .       ......+.+ .+++|
T Consensus       316 i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~a  394 (742)
T 3zwc_A          316 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTK-ELSTV  394 (742)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGG-GGGSC
T ss_pred             ccEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHH-HHhhC
Confidence            369999999999999999999999999999987532211110               0       012233444 47899


Q ss_pred             CEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCC
Q 026360           94 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (240)
Q Consensus        94 DiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~  155 (240)
                      |+|+=++|-+.+.+.-+-++.-+.++++++|-.-.++  +....|.++++ ..=+.+++--|
T Consensus       395 DlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSs--l~i~~ia~~~~-~p~r~ig~HFf  453 (742)
T 3zwc_A          395 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA--LNVDDIASSTD-RPQLVIGTHFF  453 (742)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHTTSS-CGGGEEEEECC
T ss_pred             CEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCc--CChHHHHhhcC-Ccccccccccc
Confidence            9999999988888887777777789999988655443  55666766653 34445566644

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=97.75  E-value=3.3e-05  Score=64.17  Aligned_cols=87  Identities=17%  Similarity=0.237  Sum_probs=58.7

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec----CC---HHhh-cCcCCEEEEcCCCChhhh
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----ED---LDTM-LPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~---l~el-l~~aDiVvl~lp~~~~t~  107 (240)
                      .+++.|+|+|.+|+.+|+.|...|+ |+++|+++...+... .|+...    .+   ++++ ++++|.|++++|..+.+ 
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n-   85 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSET-   85 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHHHH-
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcHHH-
Confidence            5689999999999999999999999 999998764433333 454321    22   2233 78899999999854333 


Q ss_pred             hcccHHHHccCCCCCEEEE
Q 026360          108 GMFDKDRIAKMKKGVLIVN  126 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN  126 (240)
                       +.-....+.+.++..+|-
T Consensus        86 -~~~~~~a~~~~~~~~iia  103 (234)
T 2aef_A           86 -IHCILGIRKIDESVRIIA  103 (234)
T ss_dssp             -HHHHHHHHHHCSSSEEEE
T ss_pred             -HHHHHHHHHHCCCCeEEE
Confidence             333345556677744443

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=97.75  E-value=0.00014  Score=64.11  Aligned_cols=66  Identities=18%  Similarity=0.349  Sum_probs=50.1

Q ss_pred             CeEEEEccChHHH-HHHHHhccC-CCEEE-EEcCCCCChhHHHh---cCceecCCHHhhcCc--CCEEEEcCCCC
Q 026360           37 KTVGTVGCGRIGK-LLLQRLKPF-NCNLL-YHDRVKMDPQLEKE---TGAKFEEDLDTMLPK--CDIVVVNTPLT  103 (240)
Q Consensus        37 ~~vgIIG~G~iG~-~~A~~l~~~-G~~V~-~~d~~~~~~~~~~~---~g~~~~~~l~ell~~--aDiVvl~lp~~  103 (240)
                      .+|||||+|.||+ ..+..++.. +++|. ++|++ .....+..   .++..+.++++++++  .|+|++++|..
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~-~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~   76 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH-VNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPAH   76 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT-CCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCGG
T ss_pred             eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC-HHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCcH
Confidence            4899999999998 577777665 77865 66776 34444444   466777899999986  89999999954

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=97.74  E-value=7.1e-05  Score=65.85  Aligned_cols=90  Identities=17%  Similarity=0.174  Sum_probs=72.2

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-CCHHhhcCcCCEEEEcCCCChhhhhcccHH
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-EDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  113 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~~l~ell~~aDiVvl~lp~~~~t~~~i~~~  113 (240)
                      .|.+|.|+|.|.+|...++.++..|++|++.++++...+.++++|+..+ .+.+++.+..|+|+-++...+     ....
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~-----~~~~  250 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHY-----DLKD  250 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCC-----CHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHH-----HHHH
Confidence            5899999999999999999999999999999988888888888887432 344444457899998887321     2346


Q ss_pred             HHccCCCCCEEEEcCC
Q 026360          114 RIAKMKKGVLIVNNAR  129 (240)
Q Consensus       114 ~l~~mk~gailIN~sr  129 (240)
                      .++.++++..++.++.
T Consensus       251 ~~~~l~~~G~iv~~G~  266 (348)
T 3two_A          251 YLKLLTYNGDLALVGL  266 (348)
T ss_dssp             HHTTEEEEEEEEECCC
T ss_pred             HHHHHhcCCEEEEECC
Confidence            7788999999999874

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=97.74  E-value=0.00012  Score=65.01  Aligned_cols=65  Identities=17%  Similarity=0.322  Sum_probs=48.6

Q ss_pred             CeEEEEccChHHHH-HHHHhccC-CCEEE-EEcCCCCChhHHHhc-CceecCCHHhhcC--cCCEEEEcCCCC
Q 026360           37 KTVGTVGCGRIGKL-LLQRLKPF-NCNLL-YHDRVKMDPQLEKET-GAKFEEDLDTMLP--KCDIVVVNTPLT  103 (240)
Q Consensus        37 ~~vgIIG~G~iG~~-~A~~l~~~-G~~V~-~~d~~~~~~~~~~~~-g~~~~~~l~ell~--~aDiVvl~lp~~  103 (240)
                      .+|||||+|.||+. .+..++.. +++|. ++|+++..  ..... +...+.+++++++  +.|+|++++|..
T Consensus         8 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~--~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~   78 (364)
T 3e82_A            8 INIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEK--VKRDLPDVTVIASPEAAVQHPDVDLVVIASPNA   78 (364)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHH--HHHHCTTSEEESCHHHHHTCTTCSEEEECSCGG
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHH--HHhhCCCCcEECCHHHHhcCCCCCEEEEeCChH
Confidence            58999999999997 77777665 77865 66775422  22233 5666789999998  789999999954

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=97.73  E-value=8.4e-05  Score=64.54  Aligned_cols=95  Identities=15%  Similarity=0.234  Sum_probs=60.0

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCChh--HHH-hcC------ce--ecCCHHhhcCcCCEEEEcCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ--LEK-ETG------AK--FEEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~--~~~-~~g------~~--~~~~l~ell~~aDiVvl~lp  101 (240)
                      ..++|+|||.|.||..+|..|...|.  +|.++|+++...+  ... ..+      ..  ...+. +.++.+|+|+++++
T Consensus         6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~aD~Vii~v~   84 (319)
T 1lld_A            6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAG   84 (319)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCH-HHhCCCCEEEECCC
Confidence            34799999999999999999998898  9999998642222  111 111      11  11243 56789999999995


Q ss_pred             CChhh---h--------h---cccHHHHccCCCCCEEEEcCCCc
Q 026360          102 LTEKT---R--------G---MFDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       102 ~~~~t---~--------~---~i~~~~l~~mk~gailIN~srg~  131 (240)
                      .....   +        .   -+-.+ +....+++++++++-|-
T Consensus        85 ~~~~~g~~r~~~~~~n~~~~~~~~~~-i~~~~~~~~vi~~~Np~  127 (319)
T 1lld_A           85 PRQKPGQSRLELVGATVNILKAIMPN-LVKVAPNAIYMLITNPV  127 (319)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHH-HHHHCTTSEEEECCSSH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHH-HHHhCCCceEEEecCch
Confidence            32110   0        0   11112 22236888999887653

>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=97.72  E-value=0.0004  Score=60.46  Aligned_cols=96  Identities=14%  Similarity=0.100  Sum_probs=73.5

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCCh--hHHHhcCceecCCHHhhcCcCCEEEEcCCCC------
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKETGAKFEEDLDTMLPKCDIVVVNTPLT------  103 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~--~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~------  103 (240)
                      .+.|.+|+++|= +++.++++..+..+|++|.+..|....+  +......+....++++.++++|+|....-..      
T Consensus       151 ~l~gl~ia~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~~~smg~~~~  230 (301)
T 2ef0_A          151 GLAGLEVAWVGDGNNVLNSLLEVAPLAGLKVRVATPKGYEPDPGLLKRANAFFTHDPKEAALGAHALYTDVWTSMGQEAE  230 (301)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHTCEEESCHHHHHTTCSEEEECCCC-------
T ss_pred             CcCCcEEEEECCCchhHHHHHHHHHHcCCEEEEECCchhcCCHHHHhhceeEEECCHHHHhcCCCEEEecCcccCCcccc
Confidence            589999999995 8999999999999999999999865322  2223234666789999999999998854210      


Q ss_pred             --h--h--hhhcccHHHHccCCCCCEEEEcC
Q 026360          104 --E--K--TRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       104 --~--~--t~~~i~~~~l~~mk~gailIN~s  128 (240)
                        +  +  ...-++.+.++.+||+++|..+.
T Consensus       231 ~~~~~~~~~~y~v~~e~l~~a~~~ai~mHpl  261 (301)
T 2ef0_A          231 REKRLRDFQGFQVNGELLKLLRPEGVFLHCL  261 (301)
T ss_dssp             -CHHHHHTTTCCBCHHHHTTSCTTCEEEECS
T ss_pred             hhHHHHHhhccccCHHHHHhcCCCcEEECCC
Confidence              1  1  12446889999999999998876

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=97.72  E-value=0.00027  Score=61.72  Aligned_cols=96  Identities=16%  Similarity=0.186  Sum_probs=72.3

Q ss_pred             ccCCCeEEEEccC--hHHHHHHHHhccCCCEEEEEcCCCCChh--H---HH----hcC--ceecCCHHhhcCcCCEEEEc
Q 026360           33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKMDPQ--L---EK----ETG--AKFEEDLDTMLPKCDIVVVN   99 (240)
Q Consensus        33 ~l~g~~vgIIG~G--~iG~~~A~~l~~~G~~V~~~d~~~~~~~--~---~~----~~g--~~~~~~l~ell~~aDiVvl~   99 (240)
                      .+.|.+|+++|=|  ++.++++..+..+|++|.+..|....++  .   ++    +.|  +....++++.++++|+|...
T Consensus       145 ~l~gl~va~vGD~~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~~  224 (307)
T 2i6u_A          145 ALRGLRLSYFGDGANNMAHSLLLGGVTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVLVTD  224 (307)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCeEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhcCCCEEEec
Confidence            5899999999975  9999999999999999999998643222  1   11    345  45568999999999999884


Q ss_pred             CCCC-------h---h--hhhcccHHHHccCCCCCEEEEcC
Q 026360          100 TPLT-------E---K--TRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       100 lp~~-------~---~--t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      .=..       +   +  ...-++.+.++.+||+++|..+.
T Consensus       225 ~w~smg~~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~l  265 (307)
T 2i6u_A          225 TWTSMGQENDGLDRVKPFRPFQLNSRLLALADSDAIVLHCL  265 (307)
T ss_dssp             CSSCTTCTTSCCCSSGGGGGGCBCHHHHHHSCTTCEEEECS
T ss_pred             ceecCCcccchHHHHHHHhhcCCCHHHHhhcCCCcEEECCC
Confidence            4200       1   0  12446888888899999988875

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=97.72  E-value=9.3e-05  Score=65.00  Aligned_cols=64  Identities=22%  Similarity=0.280  Sum_probs=48.1

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhH----HHh----c--C--ceecCCHHhhcCcCCEEEEcC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL----EKE----T--G--AKFEEDLDTMLPKCDIVVVNT  100 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~----~~~----~--g--~~~~~~l~ell~~aDiVvl~l  100 (240)
                      .++|+|||.|.+|..+|..+...|+ +|..+|.++...+.    ...    .  .  +....+. +.+++||+|+++.
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~   80 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTA   80 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeC
Confidence            3689999999999999999998888 89999987643221    010    1  1  2333567 7789999999998

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=97.71  E-value=0.0001  Score=64.07  Aligned_cols=79  Identities=22%  Similarity=0.328  Sum_probs=65.0

Q ss_pred             ccccCCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           31 AYDLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      +.++.||++.|||-+ .+|+.+|..|...++.|+.+....              .++.+.+++||+|+.++.-    .++
T Consensus       174 ~i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~T--------------~dl~~~~~~ADIvV~A~G~----p~~  235 (303)
T 4b4u_A          174 NIEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSRT--------------QNLPELVKQADIIVGAVGK----AEL  235 (303)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHHHTCSEEEECSCS----TTC
T ss_pred             CCCCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCCC--------------CCHHHHhhcCCeEEeccCC----CCc
Confidence            457999999999975 579999999999999999887532              3788889999999999862    356


Q ss_pred             ccHHHHccCCCCCEEEEcCCC
Q 026360          110 FDKDRIAKMKKGVLIVNNARG  130 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg  130 (240)
                      +..+.   .|+|+++||+|--
T Consensus       236 i~~d~---vk~GavVIDVGin  253 (303)
T 4b4u_A          236 IQKDW---IKQGAVVVDAGFH  253 (303)
T ss_dssp             BCGGG---SCTTCEEEECCCB
T ss_pred             ccccc---ccCCCEEEEecee
Confidence            76654   6999999999854

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=97.70  E-value=8.3e-05  Score=65.82  Aligned_cols=107  Identities=18%  Similarity=0.307  Sum_probs=69.0

Q ss_pred             CeEEEEccChHHHHHHHHhccC-CCEE-EEEcCCCCChh-HHHhcC----ceecCCHHhhcC--cCCEEEEcCCCChhhh
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPF-NCNL-LYHDRVKMDPQ-LEKETG----AKFEEDLDTMLP--KCDIVVVNTPLTEKTR  107 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~-G~~V-~~~d~~~~~~~-~~~~~g----~~~~~~l~ell~--~aDiVvl~lp~~~~t~  107 (240)
                      .+|||||+|.||+.+++.+... ++++ .++|+++.... .+...|    ...+.+++++++  +.|+|++++|....  
T Consensus         7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h--   84 (362)
T 1ydw_A            7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLH--   84 (362)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGH--
T ss_pred             eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHHH--
Confidence            5899999999999999988765 6675 46787643322 234455    355678999986  59999999993322  


Q ss_pred             hcccHHHHccCCCCCEEEEcC--CCcccCHHHHHHHHHhCCcc
Q 026360          108 GMFDKDRIAKMKKGVLIVNNA--RGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~s--rg~~vd~~aL~~aL~~g~i~  148 (240)
                      .   .-....++.|.-++.--  .-.+-+.++|.++.++.++.
T Consensus        85 ~---~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~  124 (362)
T 1ydw_A           85 V---EWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ  124 (362)
T ss_dssp             H---HHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred             H---HHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCE
Confidence            1   11223355665443321  12333456788888877665

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=97.69  E-value=0.00014  Score=66.59  Aligned_cols=111  Identities=15%  Similarity=0.239  Sum_probs=73.9

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEc--------CCCCChhH------------------HHhcCceecC
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHD--------RVKMDPQL------------------EKETGAKFEE   84 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d--------~~~~~~~~------------------~~~~g~~~~~   84 (240)
                      +.++.|++|.|-|+|++|..+|+.|...|++|++.+        +...+.+.                  ....|....+
T Consensus       230 ~~~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~~~~  309 (450)
T 4fcc_A          230 GMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLVYLE  309 (450)
T ss_dssp             TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCEEEE
T ss_pred             CCCcCCCEEEEeCCChHHHHHHHHHHhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcEEec
Confidence            346899999999999999999999999999987654        32222211                  1223444332


Q ss_pred             CHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCC--CEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360           85 DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG--VLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus        85 ~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~g--ailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      .-+-+-..||+.+-|.     +.+.|+.+....++.+  .++++-+.+.+ +.++ .+.|.+..|.
T Consensus       310 ~~~i~~~~~DI~iPcA-----l~~~I~~~~a~~L~a~g~k~IaEgAN~p~-t~eA-~~iL~~rGIl  368 (450)
T 4fcc_A          310 GQQPWSVPVDIALPCA-----TQNELDVDAAHQLIANGVKAVAEGANMPT-TIEA-TELFQQAGVL  368 (450)
T ss_dssp             TCCGGGSCCSEEEECS-----CTTCBCHHHHHHHHHTTCCEEECCSSSCB-CHHH-HHHHHHTTCE
T ss_pred             CcccccCCccEEeecc-----ccccccHHHHHHHHhcCceEEecCCCCCC-CHHH-HHHHHHCCCE
Confidence            2112234699998886     3677888888877753  46777776664 4444 3667776665

>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}

Probab=97.68  E-value=0.0004  Score=60.99  Aligned_cols=96  Identities=11%  Similarity=0.112  Sum_probs=71.6

Q ss_pred             ccCCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCCh-hH--------HHhcC--ceecCCHHhhcCcCCEEEEcC
Q 026360           33 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QL--------EKETG--AKFEEDLDTMLPKCDIVVVNT  100 (240)
Q Consensus        33 ~l~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~-~~--------~~~~g--~~~~~~l~ell~~aDiVvl~l  100 (240)
                      .+.|++|++|| .+++.++++..+..+|++|.+..|....+ +.        +...|  +....+++++++++|+|....
T Consensus       154 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~eav~~aDvvyt~~  233 (323)
T 3gd5_A          154 RLAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDV  233 (323)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEECCHHHHhcCCCEEEEec
Confidence            48999999999 68999999999999999999998864322 11        11234  456679999999999998764


Q ss_pred             CCCh----------h--hhhcccHHHHccCCCCCEEEEcC
Q 026360          101 PLTE----------K--TRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       101 p~~~----------~--t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      =...          +  ...-++.+.++.+|++++|..+.
T Consensus       234 wqs~g~~~~~~~~~~~~~~y~vt~ell~~ak~dai~mHcl  273 (323)
T 3gd5_A          234 WTSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCL  273 (323)
T ss_dssp             CC---------CCHHHHTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             eecCCCcccchHHHHHhhccCCCHHHHhhcCCCcEEECCC
Confidence            2111          0  12347889999999999998875

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=97.68  E-value=4.5e-05  Score=70.03  Aligned_cols=67  Identities=16%  Similarity=0.138  Sum_probs=48.6

Q ss_pred             CCCeEEEEccChH--HHHHHHHhcc----CCCEEEEEcCCCCChhHHHh---------cCceecCCHHhhcCcCCEEEEc
Q 026360           35 EGKTVGTVGCGRI--GKLLLQRLKP----FNCNLLYHDRVKMDPQLEKE---------TGAKFEEDLDTMLPKCDIVVVN   99 (240)
Q Consensus        35 ~g~~vgIIG~G~i--G~~~A~~l~~----~G~~V~~~d~~~~~~~~~~~---------~g~~~~~~l~ell~~aDiVvl~   99 (240)
                      +.++|+|||.|.+  |..++..+..    .| +|..||+++...+....         ..+....++++++++||+|+.+
T Consensus         4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~a   82 (450)
T 3fef_A            4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIIS   82 (450)
T ss_dssp             CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEEC
T ss_pred             CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEec
Confidence            4679999999996  6788877653    46 99999987532221111         1234557899999999999999


Q ss_pred             CCC
Q 026360          100 TPL  102 (240)
Q Consensus       100 lp~  102 (240)
                      ++.
T Consensus        83 irv   85 (450)
T 3fef_A           83 ILP   85 (450)
T ss_dssp             CCS
T ss_pred             ccc
Confidence            963

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.67  E-value=0.00012  Score=61.18  Aligned_cols=91  Identities=20%  Similarity=0.188  Sum_probs=61.1

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhH---HHhcCceec-CC-HHhhcCcCCEEEEcCCCChh
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL---EKETGAKFE-ED-LDTMLPKCDIVVVNTPLTEK  105 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~---~~~~g~~~~-~~-l~ell~~aDiVvl~lp~~~~  105 (240)
                      ..++.|++|.|||.|.+|...++.|...|++|+++++... .+.   ....++... .+ .++.+..+|+|+.++.. ++
T Consensus        26 fl~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~-~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~d-~~  103 (223)
T 3dfz_A           26 MLDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVS-AEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATND-QA  103 (223)
T ss_dssp             EECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCC-HHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCCC-TH
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCC-HHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCCC-HH
Confidence            3479999999999999999999999999999999998642 221   122223321 11 23557889999877653 33


Q ss_pred             hhhcccHHHHccCCCCCEEEEcC
Q 026360          106 TRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      .    |.......+ -.++||+.
T Consensus       104 ~----N~~I~~~ak-~gi~VNvv  121 (223)
T 3dfz_A          104 V----NKFVKQHIK-NDQLVNMA  121 (223)
T ss_dssp             H----HHHHHHHSC-TTCEEEC-
T ss_pred             H----HHHHHHHHh-CCCEEEEe
Confidence            2    333333345 56789985

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=97.66  E-value=5.3e-05  Score=68.18  Aligned_cols=96  Identities=19%  Similarity=0.225  Sum_probs=74.5

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCC-------CCh-----hHHHhcC-ceecCCHHhhcCcCCEE
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK-------MDP-----QLEKETG-AKFEEDLDTMLPKCDIV   96 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~-------~~~-----~~~~~~g-~~~~~~l~ell~~aDiV   96 (240)
                      +..+...+|.|+|.|..|..+|+.+...|. +|+.+|++.       ...     ..+.... .....+++|+++.+|++
T Consensus       183 g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~  262 (398)
T 2a9f_A          183 KKSLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIF  262 (398)
T ss_dssp             TCCTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSE
T ss_pred             CCCCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEE
Confidence            457889999999999999999999999999 899999863       101     1111111 11134789999999988


Q ss_pred             EEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCc
Q 026360           97 VVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus        97 vl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~  131 (240)
                      +=+.     ..+++.++.++.|+++++|+.+|+..
T Consensus       263 IG~S-----apgl~T~EmVk~Ma~~pIIfalsNPt  292 (398)
T 2a9f_A          263 IGVS-----APGVLKAEWISKMAARPVIFAMANPI  292 (398)
T ss_dssp             EECC-----STTCCCHHHHHTSCSSCEEEECCSSS
T ss_pred             EecC-----CCCCCCHHHHHhhCCCCEEEECCCCC
Confidence            6553     24899999999999999999999865

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=97.66  E-value=9.3e-05  Score=64.78  Aligned_cols=67  Identities=13%  Similarity=0.140  Sum_probs=50.2

Q ss_pred             CeEEEEccChHHHHHHHHhccCC---CEE-EEEcCCCCChh-HHHhcCc-eecCCHHhhcC--cCCEEEEcCCCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFN---CNL-LYHDRVKMDPQ-LEKETGA-KFEEDLDTMLP--KCDIVVVNTPLT  103 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G---~~V-~~~d~~~~~~~-~~~~~g~-~~~~~l~ell~--~aDiVvl~lp~~  103 (240)
                      .++||||+|.||+..++.++..+   +++ .++|+++...+ .++..|+ ..+.+++++++  +.|+|++++|..
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~   77 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHP   77 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGG
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcH
Confidence            48999999999999999998654   454 45677643332 3345676 45679999997  699999999944

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=97.64  E-value=0.00069  Score=59.30  Aligned_cols=96  Identities=15%  Similarity=0.224  Sum_probs=73.3

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChh--H---HH----hcC--ceecCCHHhhcCcCCEEEEcC
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQ--L---EK----ETG--AKFEEDLDTMLPKCDIVVVNT  100 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~--~---~~----~~g--~~~~~~l~ell~~aDiVvl~l  100 (240)
                      .+.|.+|+++|= +++.++++..+..+|++|.+..|....++  .   ++    +.|  +...+++++.++++|+|....
T Consensus       152 ~l~gl~va~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvy~~~  231 (315)
T 1pvv_A          152 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV  231 (315)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             CcCCcEEEEECCCcchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEEcc
Confidence            589999999995 89999999999999999999998643221  1   11    445  445689999999999998854


Q ss_pred             CC-------Chh-----hhhcccHHHHccCCCCCEEEEcC
Q 026360          101 PL-------TEK-----TRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       101 p~-------~~~-----t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      =.       .++     ...-++.+.++.+||+++|..+.
T Consensus       232 w~smg~~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mH~l  271 (315)
T 1pvv_A          232 WASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL  271 (315)
T ss_dssp             CCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred             eeccCcccchHHHHHHHHhcCCCHHHHhhcCCCcEEECCC
Confidence            21       111     12456889999999999998875

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=97.63  E-value=6.1e-05  Score=66.92  Aligned_cols=90  Identities=16%  Similarity=0.153  Sum_probs=67.4

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH-hcCceec---CC---HHhhcCcCCEEEEcCCCChhhh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFE---ED---LDTMLPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~~~---~~---l~ell~~aDiVvl~lp~~~~t~  107 (240)
                      .|.+|.|+|.|.+|..+++.++.+|++|++.++++...+.+. ++|...+   .+   +.++....|+|+.++....   
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~~~---  263 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVH---  263 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSSCC---
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCcHH---
Confidence            689999999999999999999999999999998765555555 6775422   12   2333456899999887322   


Q ss_pred             hcccHHHHccCCCCCEEEEcCC
Q 026360          108 GMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~sr  129 (240)
                        .....++.|+++..+|+++.
T Consensus       264 --~~~~~~~~l~~~G~iv~~g~  283 (366)
T 1yqd_A          264 --PLLPLFGLLKSHGKLILVGA  283 (366)
T ss_dssp             --CSHHHHHHEEEEEEEEECCC
T ss_pred             --HHHHHHHHHhcCCEEEEEcc
Confidence              12456777899999999874

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=97.63  E-value=8.5e-05  Score=64.76  Aligned_cols=92  Identities=11%  Similarity=0.139  Sum_probs=58.3

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCChhHHH---hc---CceecCCHHhhcCcCCEEEEcCCCCh---
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEK---ET---GAKFEEDLDTMLPKCDIVVVNTPLTE---  104 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~---~~---g~~~~~~l~ell~~aDiVvl~lp~~~---  104 (240)
                      .++|+|||.|.||..+|..+...|.  +|..+|.++.....+.   ..   .+....++ +.+++||+|+++.....   
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aag~~~pG~   92 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVNSLGSSQ   92 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECCCC----C
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcCCCCCCCC
Confidence            4799999999999999999887777  8999998753211111   11   23333566 66899999999973211   


Q ss_pred             -------hhhhc---ccHHHHccCCCCCEEEEcCC
Q 026360          105 -------KTRGM---FDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       105 -------~t~~~---i~~~~l~~mk~gailIN~sr  129 (240)
                             .+..+   +.++ +....|++++++++.
T Consensus        93 tR~dl~~~n~~i~~~i~~~-i~~~~p~a~iiv~sN  126 (303)
T 2i6t_A           93 SYLDVVQSNVDMFRALVPA-LGHYSQHSVLLVASQ  126 (303)
T ss_dssp             CHHHHHHHHHHHHHHHHHH-HHHHTTTCEEEECSS
T ss_pred             CHHHHHHHHHHHHHHHHHH-HHHhCCCeEEEEcCC
Confidence                   11111   1222 222348999999876

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*

Probab=97.63  E-value=0.00027  Score=61.46  Aligned_cols=96  Identities=20%  Similarity=0.200  Sum_probs=73.1

Q ss_pred             ccCCCeEEEEcc---ChHHHHHHHHhccC-CCEEEEEcCCCCCh--hHHHhcCc--eecCCHHhhcCcCCEEEEcCCCCh
Q 026360           33 DLEGKTVGTVGC---GRIGKLLLQRLKPF-NCNLLYHDRVKMDP--QLEKETGA--KFEEDLDTMLPKCDIVVVNTPLTE  104 (240)
Q Consensus        33 ~l~g~~vgIIG~---G~iG~~~A~~l~~~-G~~V~~~d~~~~~~--~~~~~~g~--~~~~~l~ell~~aDiVvl~lp~~~  104 (240)
                      .+.|++|+++|=   |++.++++..+..+ |++|.+..|.....  ...++.|.  ....+++++++++|+|....-..+
T Consensus       146 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~e  225 (299)
T 1pg5_A          146 TIDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKE  225 (299)
T ss_dssp             CSTTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCST
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCchhcCCHHHHHHcCCeEEEeCCHHHHhcCCCEEEeCCcccc
Confidence            589999999996   69999999999999 99999999854322  22234454  345799999999999988654321


Q ss_pred             ------hh-----hhcccHHHHccCCCCCEEEEcC
Q 026360          105 ------KT-----RGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       105 ------~t-----~~~i~~~~l~~mk~gailIN~s  128 (240)
                            +.     ..-++.+.++.+||+++|..+.
T Consensus       226 r~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~l  260 (299)
T 1pg5_A          226 RFVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPL  260 (299)
T ss_dssp             TSSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCS
T ss_pred             cccCHHHHHHhhcCcccCHHHHHhcCCCCEEECCC
Confidence                  11     2456888999999999988875

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.62  E-value=5.8e-05  Score=67.15  Aligned_cols=67  Identities=21%  Similarity=0.235  Sum_probs=48.2

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc------CceecCCHHhhcCcCCEEEEcCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET------GAKFEEDLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~------g~~~~~~l~ell~~aDiVvl~lp~  102 (240)
                      +.+||+|+|.|.+|+.+|+.|+. ..+|.+.|++....+...+.      .+...+++.++++++|+|+.++|.
T Consensus        15 ~~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~   87 (365)
T 3abi_A           15 RHMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPG   87 (365)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCG
T ss_pred             CccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCC
Confidence            45689999999999999999976 47899999865333333221      111123466788999999999983

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=97.61  E-value=9e-05  Score=67.53  Aligned_cols=108  Identities=17%  Similarity=0.215  Sum_probs=65.5

Q ss_pred             CCeEEEEccChHHH-HHHHHhccC-CCEE-EEEcCCCCChh-HHHhcCce-----ecCCHHhhcC--cCCEEEEcCCCCh
Q 026360           36 GKTVGTVGCGRIGK-LLLQRLKPF-NCNL-LYHDRVKMDPQ-LEKETGAK-----FEEDLDTMLP--KCDIVVVNTPLTE  104 (240)
Q Consensus        36 g~~vgIIG~G~iG~-~~A~~l~~~-G~~V-~~~d~~~~~~~-~~~~~g~~-----~~~~l~ell~--~aDiVvl~lp~~~  104 (240)
                      -.+|||||+|.||+ .++..+... ++++ .++|+++...+ ..+..|+.     .+.+++++++  +.|+|++++|...
T Consensus        83 ~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~~~  162 (433)
T 1h6d_A           83 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSL  162 (433)
T ss_dssp             CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGG
T ss_pred             ceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCchh
Confidence            35899999999997 899988765 5675 47787653332 23445653     4678999987  7999999999432


Q ss_pred             hhhhcccHHHHccCCCCC-EEEEc-CCCcccCHHHHHHHHHhCCcc
Q 026360          105 KTRGMFDKDRIAKMKKGV-LIVNN-ARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       105 ~t~~~i~~~~l~~mk~ga-ilIN~-srg~~vd~~aL~~aL~~g~i~  148 (240)
                      ...     -....++.|. +++.- ..-.+-+.++|.++.++.++.
T Consensus       163 h~~-----~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~  203 (433)
T 1h6d_A          163 HAE-----FAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKK  203 (433)
T ss_dssp             HHH-----HHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCC
T ss_pred             HHH-----HHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCCe
Confidence            211     1122234444 44331 112233444566666554443

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=97.60  E-value=0.00013  Score=63.37  Aligned_cols=96  Identities=22%  Similarity=0.196  Sum_probs=63.4

Q ss_pred             CeEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCChh-----HHHh---c--C--ceecCCHHhhcCcCCEEEEcCCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-----LEKE---T--G--AKFEEDLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~-----~~~~---~--g--~~~~~~l~ell~~aDiVvl~lp~  102 (240)
                      ++|+|||.|.+|.++|..|...|.  +|..+|+++...+     ....   +  .  +....+ .+.+++||+|+++.+.
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~   79 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL   79 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCC
Confidence            589999999999999999988787  8999998653221     0010   1  1  222345 7889999999999753


Q ss_pred             Chh---h--------hhccc--HHHHccCCCCCEEEEcCCCcccCH
Q 026360          103 TEK---T--------RGMFD--KDRIAKMKKGVLIVNNARGAIMDT  135 (240)
Q Consensus       103 ~~~---t--------~~~i~--~~~l~~mk~gailIN~srg~~vd~  135 (240)
                      ...   +        ..++.  .+.+....|++++++++  .++|.
T Consensus        80 ~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs--NPvd~  123 (294)
T 1oju_A           80 ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT--NPMDV  123 (294)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS--SSHHH
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC--CcchH
Confidence            211   1        11111  12344557899999998  44444

>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}

Probab=97.59  E-value=0.00052  Score=59.85  Aligned_cols=96  Identities=14%  Similarity=0.090  Sum_probs=71.4

Q ss_pred             ccC-CCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCCh-hHH----H----hcC--ceecCCHHhhcCcCCEEEEc
Q 026360           33 DLE-GKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QLE----K----ETG--AKFEEDLDTMLPKCDIVVVN   99 (240)
Q Consensus        33 ~l~-g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~-~~~----~----~~g--~~~~~~l~ell~~aDiVvl~   99 (240)
                      .+. |++|+++| .+++.++++..+..+|++|.+..|....+ +..    +    ..|  +....++++.++++|+|..-
T Consensus       142 ~l~~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvyt~  221 (307)
T 3tpf_A          142 MQNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEALKDKDVVITD  221 (307)
T ss_dssp             CGGGCCEEEEESCSSHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CCCCCCEEEEEcCCCccHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEec
Confidence            478 99999999 67899999999999999999998864322 111    1    333  44567999999999999886


Q ss_pred             CC--CCh--h--------hhhcccHHHHccCCCCCEEEEcC
Q 026360          100 TP--LTE--K--------TRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       100 lp--~~~--~--------t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      .=  -..  +        ...-++.+.++.+|++++|..+.
T Consensus       222 ~w~smg~e~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mH~l  262 (307)
T 3tpf_A          222 TWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCL  262 (307)
T ss_dssp             CSSCTTGGGGHHHHHHHTGGGCBCHHHHHHSCTTCEEEECS
T ss_pred             CcccCCchhhHHHHHHHhcccccCHHHHHhcCCCcEEECCC
Confidence            51  111  0        12346888899999999998875

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=97.58  E-value=0.00064  Score=59.74  Aligned_cols=96  Identities=16%  Similarity=0.237  Sum_probs=72.1

Q ss_pred             ccCCCeEEEEccC--hHHHHHHHHhccCCCEEEEEcCCCCCh-h-H---HH----hcC--ceecCCHHhhcCcCCEEEEc
Q 026360           33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKMDP-Q-L---EK----ETG--AKFEEDLDTMLPKCDIVVVN   99 (240)
Q Consensus        33 ~l~g~~vgIIG~G--~iG~~~A~~l~~~G~~V~~~d~~~~~~-~-~---~~----~~g--~~~~~~l~ell~~aDiVvl~   99 (240)
                      .+.|.+|+++|=|  ++.++++..+..+|++|.+..|....+ + .   ++    +.|  +....+++++++++|+|...
T Consensus       164 ~l~gl~va~vGD~~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvyt~  243 (325)
T 1vlv_A          164 RLKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTD  243 (325)
T ss_dssp             CSTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCcEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEec
Confidence            5899999999974  999999999999999999999854221 1 1   11    445  44568999999999999885


Q ss_pred             CCCC-------hh-----hhhcccHHHHccC-CCCCEEEEcC
Q 026360          100 TPLT-------EK-----TRGMFDKDRIAKM-KKGVLIVNNA  128 (240)
Q Consensus       100 lp~~-------~~-----t~~~i~~~~l~~m-k~gailIN~s  128 (240)
                      .=..       ++     ...-++.+.++.+ ||+++|..+.
T Consensus       244 ~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~k~dai~mH~L  285 (325)
T 1vlv_A          244 VWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCL  285 (325)
T ss_dssp             CCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             cccccccccchHhHHHHHhhcCCCHHHHHhccCCCeEEECCC
Confidence            4210       11     1245688999999 9999998875

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=97.58  E-value=5.1e-05  Score=67.34  Aligned_cols=67  Identities=22%  Similarity=0.217  Sum_probs=49.6

Q ss_pred             CCeEEEEccChHHHH-HHHHhccC-CCEEE-EEcCCCCChhHH-Hhc-CceecCCHHhhcCc--CCEEEEcCCC
Q 026360           36 GKTVGTVGCGRIGKL-LLQRLKPF-NCNLL-YHDRVKMDPQLE-KET-GAKFEEDLDTMLPK--CDIVVVNTPL  102 (240)
Q Consensus        36 g~~vgIIG~G~iG~~-~A~~l~~~-G~~V~-~~d~~~~~~~~~-~~~-g~~~~~~l~ell~~--aDiVvl~lp~  102 (240)
                      ..+|||||+|.||+. +++.++.. +.+++ ++|+++...+.+ +.. +...+.++++++++  .|+|++++|.
T Consensus         5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~   78 (359)
T 3m2t_A            5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPP   78 (359)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCH
T ss_pred             cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCc
Confidence            468999999999995 78888765 77866 778865433333 233 34556799999975  4999999993

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=97.58  E-value=7.4e-05  Score=65.38  Aligned_cols=93  Identities=13%  Similarity=0.099  Sum_probs=58.3

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCChhH-HHh----c-----CceecCCHHhhcCcCCEEEEcCCCC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQL-EKE----T-----GAKFEEDLDTMLPKCDIVVVNTPLT  103 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~~-~~~----~-----g~~~~~~l~ell~~aDiVvl~lp~~  103 (240)
                      -++|+|||.|.||.++|..++..|.  +|..+|+++...+. ...    .     ......+..+.+++||+|+++.|..
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~~~   85 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGAN   85 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCCCC
Confidence            4699999999999999999876664  89999986431111 111    0     1111123456789999999997643


Q ss_pred             hhh-----------hhc---ccHHHHccCCCCCEEEEcCC
Q 026360          104 EKT-----------RGM---FDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       104 ~~t-----------~~~---i~~~~l~~mk~gailIN~sr  129 (240)
                      ...           ..+   +. +.+....|++++++++.
T Consensus        86 ~~~g~~r~dl~~~n~~i~~~i~-~~i~~~~p~a~~iv~tN  124 (316)
T 1ldn_A           86 QKPGETRLDLVDKNIAIFRSIV-ESVMASGFQGLFLVATN  124 (316)
T ss_dssp             CCTTTCSGGGHHHHHHHHHHHH-HHHHHHTCCSEEEECSS
T ss_pred             CCCCCCHHHHHHcChHHHHHHH-HHHHHHCCCCEEEEeCC
Confidence            210           011   11 12233358899999864

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=97.57  E-value=0.00016  Score=64.10  Aligned_cols=66  Identities=20%  Similarity=0.214  Sum_probs=49.9

Q ss_pred             CCeEEEEccChHHHH-HHHHhccC-CCEEE-EEcCCCCChhHHHhc-CceecCCHHhhcCc--CCEEEEcCCCC
Q 026360           36 GKTVGTVGCGRIGKL-LLQRLKPF-NCNLL-YHDRVKMDPQLEKET-GAKFEEDLDTMLPK--CDIVVVNTPLT  103 (240)
Q Consensus        36 g~~vgIIG~G~iG~~-~A~~l~~~-G~~V~-~~d~~~~~~~~~~~~-g~~~~~~l~ell~~--aDiVvl~lp~~  103 (240)
                      -.+|||||+|.||+. .+..++.. +++|. ++|+++..  ..... +...+.++++++++  .|+|++++|..
T Consensus         5 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~--~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~   76 (362)
T 3fhl_A            5 IIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKEL--SKERYPQASIVRSFKELTEDPEIDLIVVNTPDN   76 (362)
T ss_dssp             CEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCG--GGTTCTTSEEESCSHHHHTCTTCCEEEECSCGG
T ss_pred             ceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHH--HHHhCCCCceECCHHHHhcCCCCCEEEEeCChH
Confidence            358999999999997 67777665 77865 66776533  33344 56667899999987  89999999943

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=97.57  E-value=0.00011  Score=64.46  Aligned_cols=115  Identities=18%  Similarity=0.192  Sum_probs=65.7

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCChh-HHHhc--C------ceecCCHHhhcCcCCEEEEcCCCCh
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKET--G------AKFEEDLDTMLPKCDIVVVNTPLTE  104 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~-~~~~~--g------~~~~~~l~ell~~aDiVvl~lp~~~  104 (240)
                      .++|+|||.|.+|..++..+...|.  +|..+|.++...+ ...++  .      +....+..+.+++||+|+++.+...
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p~   86 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANR   86 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC--
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence            4689999999999999999988887  8999998753322 12211  1      1111123566899999999987432


Q ss_pred             h---hh--------hccc--HHHHccCCCCCEEEEcCCCcccCHHHHHHH--HHhCCccEE
Q 026360          105 K---TR--------GMFD--KDRIAKMKKGVLIVNNARGAIMDTQAVVDA--CSSGHIAGY  150 (240)
Q Consensus       105 ~---t~--------~~i~--~~~l~~mk~gailIN~srg~~vd~~aL~~a--L~~g~i~ga  150 (240)
                      .   ++        .++.  .+.+....|++++++++-.-=+....+.+.  +...++.|.
T Consensus        87 k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~~~~~~k~s~~p~~rviG~  147 (318)
T 1y6j_A           87 KPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYMIQKWSGLPVGKVIGS  147 (318)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             CCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHHHHHcCCCHHHEecc
Confidence            1   00        0010  112233368999999753222222233333  234466666

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.56  E-value=0.00018  Score=59.24  Aligned_cols=73  Identities=25%  Similarity=0.288  Sum_probs=53.2

Q ss_pred             ccccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc-eec-----CCHHhhcCcCCEEEEcCCCC
Q 026360           31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA-KFE-----EDLDTMLPKCDIVVVNTPLT  103 (240)
Q Consensus        31 ~~~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~-~~~-----~~l~ell~~aDiVvl~lp~~  103 (240)
                      ...+.||+|.|.|. |.||+.+++.|.+.|++|++.+|++...+.....++ ..+     +++.+.+..+|+|+.+....
T Consensus        16 ~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~~   95 (236)
T 3e8x_A           16 NLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGSG   95 (236)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCCC
T ss_pred             ccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCCCC
Confidence            35689999999997 999999999999999999999997654444333344 321     45677888999999887643

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=97.56  E-value=0.00023  Score=62.29  Aligned_cols=93  Identities=13%  Similarity=0.187  Sum_probs=60.7

Q ss_pred             CeEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCChh----HHHh------cCceec-CCHHhhcCcCCEEEEcCCCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ----LEKE------TGAKFE-EDLDTMLPKCDIVVVNTPLT  103 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~----~~~~------~g~~~~-~~l~ell~~aDiVvl~lp~~  103 (240)
                      ++|+|||.|.||..+|..+...|.  +|..+|.++...+    ....      ...... .+..+.+++||+|+++.+..
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~   80 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLP   80 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCC
Confidence            589999999999999999887776  8999998764322    0110      122221 24567899999999997643


Q ss_pred             hh-----------hhhccc--HHHHccCCCCCEEEEcCC
Q 026360          104 EK-----------TRGMFD--KDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       104 ~~-----------t~~~i~--~~~l~~mk~gailIN~sr  129 (240)
                      ..           +..++.  .+.+....|++++++++.
T Consensus        81 ~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN  119 (314)
T 3nep_X           81 RSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVAN  119 (314)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS
T ss_pred             CCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCC
Confidence            11           111111  123444578999999984

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=97.55  E-value=0.00038  Score=61.45  Aligned_cols=96  Identities=14%  Similarity=0.139  Sum_probs=72.5

Q ss_pred             ccCCCeEEEEccC--hHHHHHHHHhccCCCEEEEEcCCCCCh-h-H---HH----hcC--ceecCCHHhhcCcCCEEEEc
Q 026360           33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKMDP-Q-L---EK----ETG--AKFEEDLDTMLPKCDIVVVN   99 (240)
Q Consensus        33 ~l~g~~vgIIG~G--~iG~~~A~~l~~~G~~V~~~d~~~~~~-~-~---~~----~~g--~~~~~~l~ell~~aDiVvl~   99 (240)
                      .+.|.+|+++|=|  +++++++..+..+|++|.+..|....+ + .   ++    ..|  +...+++++.++++|+|..-
T Consensus       152 ~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd  231 (335)
T 1dxh_A          152 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD  231 (335)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred             CcCCeEEEEecCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEeC
Confidence            5889999999975  999999999999999999999864221 1 1   11    445  44568999999999999885


Q ss_pred             CCCC--------hh-----hhhcccHHHHccC-CCCCEEEEcC
Q 026360          100 TPLT--------EK-----TRGMFDKDRIAKM-KKGVLIVNNA  128 (240)
Q Consensus       100 lp~~--------~~-----t~~~i~~~~l~~m-k~gailIN~s  128 (240)
                      .=..        ++     ...-++.+.++.+ ||+++|..+.
T Consensus       232 ~w~smg~~~e~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcL  274 (335)
T 1dxh_A          232 VWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL  274 (335)
T ss_dssp             CCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred             CccccCccchhhHHHHHHhhcceeCHHHHHhccCCCeEEECCC
Confidence            4210        11     1245688999999 9999998875

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=97.55  E-value=0.00041  Score=60.63  Aligned_cols=96  Identities=19%  Similarity=0.317  Sum_probs=70.1

Q ss_pred             ccCCCeEEEEcc---ChHHHHHHHHhccC-CCEEEEEcCCCCC-hh----HHHhcCc--eecCCHHhhcCcCCEEEEcCC
Q 026360           33 DLEGKTVGTVGC---GRIGKLLLQRLKPF-NCNLLYHDRVKMD-PQ----LEKETGA--KFEEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        33 ~l~g~~vgIIG~---G~iG~~~A~~l~~~-G~~V~~~d~~~~~-~~----~~~~~g~--~~~~~l~ell~~aDiVvl~lp  101 (240)
                      .+.|++|+++|=   |++.++++..+..+ |++|.+..|.... .+    .+++.|.  ....+++++++++|+|....-
T Consensus       151 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~  230 (310)
T 3csu_A          151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRV  230 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCGGGTTTTCSEEEECC-
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCc
Confidence            589999999996   69999999999999 9999999885432 21    1223353  355799999999999988643


Q ss_pred             CCh-----hh-----hhcccHHHHccCCCCCEEEEcC
Q 026360          102 LTE-----KT-----RGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       102 ~~~-----~t-----~~~i~~~~l~~mk~gailIN~s  128 (240)
                      ..+     +.     ..-++.+.++.+||+++|..+.
T Consensus       231 q~er~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l  267 (310)
T 3csu_A          231 QKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL  267 (310)
T ss_dssp             ----------------CCBCGGGGTTCCTTCEEECCS
T ss_pred             cccccCHHHHHHHhhccCCCHHHHhhcCCCCEEECCC
Confidence            211     10     2346788888889999888775

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=97.55  E-value=0.00017  Score=62.34  Aligned_cols=106  Identities=13%  Similarity=0.136  Sum_probs=70.3

Q ss_pred             CCeEEEEcc-ChHHHHHHHHhccCCCEEE-EEcCCCCChhHHHhcCceecCCHHhhcC--cCCEEEEcCCCChhhhhccc
Q 026360           36 GKTVGTVGC-GRIGKLLLQRLKPFNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        36 g~~vgIIG~-G~iG~~~A~~l~~~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDiVvl~lp~~~~t~~~i~  111 (240)
                      ..+|+|+|+ |++|+.+++.++..|++++ .+|+.....   ...|+..+.+++++.+  ..|++++++|.. .....+ 
T Consensus         7 ~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~g~---~~~G~~vy~sl~el~~~~~~D~viI~tP~~-~~~~~~-   81 (288)
T 2nu8_A            7 NTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGT---THLGLPVFNTVREAVAATGATASVIYVPAP-FCKDSI-   81 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC---EETTEEEESSHHHHHHHHCCCEEEECCCGG-GHHHHH-
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcccc---eeCCeeccCCHHHHhhcCCCCEEEEecCHH-HHHHHH-
Confidence            578999999 9999999999988899843 556532111   1357777779999988  899999999932 222222 


Q ss_pred             HHHHccCCCCCEEEEcCCCc-ccCHHHHHHHHHhCCcc
Q 026360          112 KDRIAKMKKGVLIVNNARGA-IMDTQAVVDACSSGHIA  148 (240)
Q Consensus       112 ~~~l~~mk~gailIN~srg~-~vd~~aL~~aL~~g~i~  148 (240)
                      .+.++ ... ..+|..+.|- .-+.+.+.++.++..+.
T Consensus        82 ~ea~~-~Gi-~~iVi~t~G~~~~~~~~l~~~A~~~gv~  117 (288)
T 2nu8_A           82 LEAID-AGI-KLIITITEGIPTLDMLTVKVKLDEAGVR  117 (288)
T ss_dssp             HHHHH-TTC-SEEEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             HHHHH-CCC-CEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            23332 222 2345555553 23455888888887665

>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}

Probab=97.54  E-value=0.00043  Score=61.17  Aligned_cols=95  Identities=12%  Similarity=0.084  Sum_probs=69.2

Q ss_pred             ccCCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCCh-hH--------HHhcC--ceecCCHHhhcCcCCEEEEcC
Q 026360           33 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QL--------EKETG--AKFEEDLDTMLPKCDIVVVNT  100 (240)
Q Consensus        33 ~l~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~-~~--------~~~~g--~~~~~~l~ell~~aDiVvl~l  100 (240)
                      .+.|++|++|| .+++.++++..+..+|++|.+..|....+ +.        +...|  +....+++ .++++|+|..-+
T Consensus       172 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~-av~~aDvvytd~  250 (339)
T 4a8t_A          172 KLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDV  250 (339)
T ss_dssp             CGGGCEEEEESSCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHCCEEEEECCGG-GGTTCSEEEECC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEECChh-HHcCCCEEEecC
Confidence            58899999999 68999999999999999999998864322 11        12335  44567899 999999998733


Q ss_pred             --C--CC----hh----h--hhcccHHHHccCCCCCEEEEcC
Q 026360          101 --P--LT----EK----T--RGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       101 --p--~~----~~----t--~~~i~~~~l~~mk~gailIN~s  128 (240)
                        +  ..    ++    .  ..-++.+.++.+|++++|..+.
T Consensus       251 w~smg~~~~~~~er~~~~~~~y~vt~ell~~ak~dai~mHcL  292 (339)
T 4a8t_A          251 WYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCL  292 (339)
T ss_dssp             SSCCTTSCCCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECS
T ss_pred             cccCCchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCC
Confidence              1  10    11    1  1446788888888888888775

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.54  E-value=5.1e-05  Score=70.05  Aligned_cols=93  Identities=22%  Similarity=0.254  Sum_probs=58.4

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccC-CCEEEEEcCCCCChhHHH-hcCcee--c-----CCHHhhcCcCCEEEEcCC
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEK-ETGAKF--E-----EDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~-G~~V~~~d~~~~~~~~~~-~~g~~~--~-----~~l~ell~~aDiVvl~lp  101 (240)
                      ...+.+++|+|+|.|.+|+.++..|... |.+|++++|+....+... ..++..  .     +++.++++++|+|+.++|
T Consensus        18 ~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp   97 (467)
T 2axq_A           18 EGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIP   97 (467)
T ss_dssp             -----CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSC
T ss_pred             ccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCc
Confidence            3467899999999999999999999887 789999999753332222 123321  1     145567789999999999


Q ss_pred             CChhhhhcccHHHHccCCCCCEEEEcC
Q 026360          102 LTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       102 ~~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      ..... . +...   .++++..+++++
T Consensus        98 ~~~~~-~-v~~a---~l~~g~~vvd~~  119 (467)
T 2axq_A           98 YTFHP-N-VVKS---AIRTKTDVVTSS  119 (467)
T ss_dssp             GGGHH-H-HHHH---HHHHTCEEEECS
T ss_pred             hhhhH-H-HHHH---HHhcCCEEEEee
Confidence            54211 1 1111   234566666664

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.54  E-value=1.5e-05  Score=67.44  Aligned_cols=106  Identities=22%  Similarity=0.229  Sum_probs=68.7

Q ss_pred             HHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCC-------------------ChhH
Q 026360           15 HQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKM-------------------DPQL   74 (240)
Q Consensus        15 ~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~-------------------~~~~   74 (240)
                      ++++-..|....    ...|.+++|.|+|+|.+|..+|+.|...|. +++++|++..                   +.+.
T Consensus        14 Rq~~l~~~g~~~----q~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~   89 (249)
T 1jw9_B           14 RQIILRGFDFDG----QEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVES   89 (249)
T ss_dssp             HHHTSTTTHHHH----HHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHH
T ss_pred             heecccccCHHH----HHHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHH
Confidence            344434574321    235889999999999999999999999997 7999998751                   1111


Q ss_pred             H----Hhc--Cc--ee----c--CCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcC
Q 026360           75 E----KET--GA--KF----E--EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus        75 ~----~~~--g~--~~----~--~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      +    ...  ++  ..    .  .+++++++++|+|+.+++ +.+++..++....+.   +..+|+.+
T Consensus        90 ~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~~~~l~~~~~~~---~~p~i~~~  153 (249)
T 1jw9_B           90 ARDALTRINPHIAITPVNALLDDAELAALIAEHDLVLDCTD-NVAVRNQLNAGCFAA---KVPLVSGA  153 (249)
T ss_dssp             HHHHHHHHCTTSEEEEECSCCCHHHHHHHHHTSSEEEECCS-SHHHHHHHHHHHHHH---TCCEEEEE
T ss_pred             HHHHHHHHCCCcEEEEEeccCCHhHHHHHHhCCCEEEEeCC-CHHHHHHHHHHHHHc---CCCEEEee
Confidence            1    111  11  11    1  134567889999999986 466777776554432   34466654

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=97.52  E-value=0.0001  Score=65.64  Aligned_cols=90  Identities=17%  Similarity=0.238  Sum_probs=68.4

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec---CC---HHhhcCcCCEEEEcCCCChhhhh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---ED---LDTMLPKCDIVVVNTPLTEKTRG  108 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~---~~---l~ell~~aDiVvl~lp~~~~t~~  108 (240)
                      .|.+|.|+|.|.+|...++.++.+|++|++.++++...+.++++|+..+   .+   .+++....|+|+-++....    
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~----  269 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPH----  269 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCC----
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHH----
Confidence            5889999999999999999999999999999987767777777786422   11   2233356899998886321    


Q ss_pred             cccHHHHccCCCCCEEEEcCC
Q 026360          109 MFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       109 ~i~~~~l~~mk~gailIN~sr  129 (240)
                       .....++.++++..+|.++.
T Consensus       270 -~~~~~~~~l~~~G~iv~~G~  289 (369)
T 1uuf_A          270 -NLDDFTTLLKRDGTMTLVGA  289 (369)
T ss_dssp             -CHHHHHTTEEEEEEEEECCC
T ss_pred             -HHHHHHHHhccCCEEEEecc
Confidence             12456778899999999874

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=97.50  E-value=0.00011  Score=64.96  Aligned_cols=92  Identities=25%  Similarity=0.188  Sum_probs=69.0

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-----C-CHHhhc-CcCCEEEEcCCCChhhh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----E-DLDTML-PKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~-~l~ell-~~aDiVvl~lp~~~~t~  107 (240)
                      .|.+|.|+|.|.+|..+++.++..|++|++.++++...+.++++|+..+     . ++.+.+ ...|+|+.+++.++  .
T Consensus       179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~~~--~  256 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT--D  256 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST--T
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCCCc--H
Confidence            5899999999999999999999999999999988777777888886432     1 232222 46899999987421  0


Q ss_pred             hcccHHHHccCCCCCEEEEcCC
Q 026360          108 GMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~sr  129 (240)
                      .. ....++.++++..++.++.
T Consensus       257 ~~-~~~~~~~l~~~G~iv~~g~  277 (360)
T 1piw_A          257 ID-FNIMPKAMKVGGRIVSISI  277 (360)
T ss_dssp             CC-TTTGGGGEEEEEEEEECCC
T ss_pred             HH-HHHHHHHhcCCCEEEEecC
Confidence            11 2345677899999999874

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=97.50  E-value=9.5e-05  Score=65.56  Aligned_cols=93  Identities=17%  Similarity=0.252  Sum_probs=68.3

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCC---CChhHHHhcCceecC--CH-Hhhc---CcCCEEEEcCCCC
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK---MDPQLEKETGAKFEE--DL-DTML---PKCDIVVVNTPLT  103 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~---~~~~~~~~~g~~~~~--~l-~ell---~~aDiVvl~lp~~  103 (240)
                      .+.|++|.|+|.|.+|..+++.++..|++|++.++++   ...+.++++|+..++  ++ +++.   ...|+|+.++...
T Consensus       178 ~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~  257 (366)
T 2cdc_A          178 TLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGAD  257 (366)
T ss_dssp             SSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCCh
Confidence            4669999999999999999999999999999999876   455566667765441  11 1111   3589999998743


Q ss_pred             hhhhhcccHHHHccCCCCCEEEEcCC
Q 026360          104 EKTRGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       104 ~~t~~~i~~~~l~~mk~gailIN~sr  129 (240)
                      +..   + ...++.|+++..+|+++-
T Consensus       258 ~~~---~-~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          258 VNI---L-GNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             THH---H-HHHGGGEEEEEEEEECSC
T ss_pred             HHH---H-HHHHHHHhcCCEEEEEec
Confidence            221   0 456778899999999874

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=97.50  E-value=0.00031  Score=62.36  Aligned_cols=90  Identities=17%  Similarity=0.112  Sum_probs=68.0

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceec-------CCHHhhcC-----cCCEEEEcCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-------EDLDTMLP-----KCDIVVVNTP  101 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-------~~l~ell~-----~aDiVvl~lp  101 (240)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++...+.++++|+..+       .++.+.+.     ..|+|+-++.
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g  271 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVG  271 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCC
Confidence            58899999999999999999999999 79999987767777778886422       12333222     4899999886


Q ss_pred             CChhhhhcccHHHHccCCCC-CEEEEcCC
Q 026360          102 LTEKTRGMFDKDRIAKMKKG-VLIVNNAR  129 (240)
Q Consensus       102 ~~~~t~~~i~~~~l~~mk~g-ailIN~sr  129 (240)
                      ..+.     ....++.++++ ..+|.++-
T Consensus       272 ~~~~-----~~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          272 NVGV-----MRNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             CHHH-----HHHHHHTBCTTTCEEEECSC
T ss_pred             CHHH-----HHHHHHHhhcCCcEEEEEcC
Confidence            3211     24567788998 88988873

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1

Probab=97.50  E-value=0.00028  Score=61.66  Aligned_cols=96  Identities=19%  Similarity=0.291  Sum_probs=70.7

Q ss_pred             ccCCCeEEEEcc---ChHHHHHHHHhccCCCEEEEEcCCCCC-hh-H---HHhcCc--eecCCHHhhcCcCCEEEEcCCC
Q 026360           33 DLEGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVKMD-PQ-L---EKETGA--KFEEDLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        33 ~l~g~~vgIIG~---G~iG~~~A~~l~~~G~~V~~~d~~~~~-~~-~---~~~~g~--~~~~~l~ell~~aDiVvl~lp~  102 (240)
                      .+.|++|+++|=   |++.++++..+..+|++|.+..|.... .+ .   +++.|.  ....+++++++++|+|....-.
T Consensus       152 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q  231 (308)
T 1ml4_A          152 RIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQ  231 (308)
T ss_dssp             CSSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCCC
T ss_pred             CCCCeEEEEeCCCCcCchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCcc
Confidence            588999999996   599999999999999999999885432 22 1   223354  3457999999999999886532


Q ss_pred             C------hhh-----hhcccHHHHccCCCCCEEEEcC
Q 026360          103 T------EKT-----RGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       103 ~------~~t-----~~~i~~~~l~~mk~gailIN~s  128 (240)
                      .      ++.     ..-++.+.++.+||+++|..+.
T Consensus       232 ~er~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l  268 (308)
T 1ml4_A          232 KERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPL  268 (308)
T ss_dssp             GGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCS
T ss_pred             ccccCCHHHHHHHhcCcccCHHHHhhcCCCCEEECCC
Confidence            1      111     1345778888888888887765

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=97.49  E-value=0.00011  Score=60.99  Aligned_cols=67  Identities=16%  Similarity=0.172  Sum_probs=44.5

Q ss_pred             CCeEEEEccChHHHHHHHH--hccCCCEEE-EEcCCCCChhH-HHhcCceecCCHHhhcCcCCEEEEcCCC
Q 026360           36 GKTVGTVGCGRIGKLLLQR--LKPFNCNLL-YHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~--l~~~G~~V~-~~d~~~~~~~~-~~~~g~~~~~~l~ell~~aDiVvl~lp~  102 (240)
                      ..+++|||+|.+|+.+++.  ....|+++. ++|.++..... ....++...+++++++++.|++++++|.
T Consensus        85 ~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvPs  155 (215)
T 2vt3_A           85 MTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPA  155 (215)
T ss_dssp             --CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSCH
T ss_pred             CCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecCc
Confidence            4689999999999999994  345688755 66776543322 2223344456889999777999999993

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=97.49  E-value=0.00031  Score=61.15  Aligned_cols=67  Identities=16%  Similarity=0.146  Sum_probs=51.2

Q ss_pred             CeEEEEcc-ChHHHHHHHHhccCCCEE-EEEcCCCCChhHHHhc-CceecCCHHhhc----------CcCCEEEEcCCCC
Q 026360           37 KTVGTVGC-GRIGKLLLQRLKPFNCNL-LYHDRVKMDPQLEKET-GAKFEEDLDTML----------PKCDIVVVNTPLT  103 (240)
Q Consensus        37 ~~vgIIG~-G~iG~~~A~~l~~~G~~V-~~~d~~~~~~~~~~~~-g~~~~~~l~ell----------~~aDiVvl~lp~~  103 (240)
                      .++||||+ |.||+..+..++..+.++ .++|+++......+.. +...+.++++++          .+.|+|++++|..
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~~   83 (312)
T 3o9z_A            4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPNH   83 (312)
T ss_dssp             CEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCGG
T ss_pred             eEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCCch
Confidence            58999999 689999999999888885 4668776543333332 456667899987          6799999999943

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A

Probab=97.48  E-value=0.0003  Score=61.31  Aligned_cols=93  Identities=18%  Similarity=0.277  Sum_probs=69.8

Q ss_pred             ccCCCeEEEEcc---ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCCh-----
Q 026360           33 DLEGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE-----  104 (240)
Q Consensus        33 ~l~g~~vgIIG~---G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~-----  104 (240)
                      .+.|++|+++|=   +++.++++..+..+|++|.+..|....++. ...|  ...+++++++++|+|....-..+     
T Consensus       144 ~l~glkva~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~-~~~g--~~~d~~eav~~aDvvyt~~~q~er~~~~  220 (304)
T 3r7f_A          144 TFKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDEE-NTFG--TYVSMDEAVESSDVVMLLRIQNERHQSA  220 (304)
T ss_dssp             CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTT-CSSC--EECCHHHHHHHCSEEEECCCCTTTCCSS
T ss_pred             CCCCCEEEEEcCCCCcchHHHHHHHHHHcCCEEEEECCCccCcch-hhcC--ccCCHHHHhCCCCEEEeccchhhccccc
Confidence            589999999995   579999999999999999999875322221 2233  34589999999999988532111     


Q ss_pred             ----h--hhhcccHHHHccCCCCCEEEEcC
Q 026360          105 ----K--TRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       105 ----~--t~~~i~~~~l~~mk~gailIN~s  128 (240)
                          +  ...-++.+.++.+|++++|..+.
T Consensus       221 ~~~~~~~~~y~v~~~~l~~a~~~ai~mHcl  250 (304)
T 3r7f_A          221 VSQEGYLNKYGLTVERAERMKRHAIIMHPA  250 (304)
T ss_dssp             CCSTTHHHHHSBCHHHHTTSCTTCEEECCS
T ss_pred             hhHHHHhCCCccCHHHHhhcCCCCEEECCC
Confidence                1  12447889999999999998875

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=97.48  E-value=0.00023  Score=62.75  Aligned_cols=67  Identities=16%  Similarity=0.165  Sum_probs=48.5

Q ss_pred             CeEEEEccChHHHH-HHHHhccC-CCEEE-EEcCCCCChhHHHhcCceecCCHHhhcCc--CCEEEEcCCCCh
Q 026360           37 KTVGTVGCGRIGKL-LLQRLKPF-NCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLPK--CDIVVVNTPLTE  104 (240)
Q Consensus        37 ~~vgIIG~G~iG~~-~A~~l~~~-G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~~--aDiVvl~lp~~~  104 (240)
                      .+|||||+|.||+. .+..++.. +++|. ++|+++.... ....+...+.++++++++  .|+|++++|...
T Consensus         8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~-~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~   79 (352)
T 3kux_A            8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVH-ADWPAIPVVSDPQMLFNDPSIDLIVIPTPNDT   79 (352)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH-TTCSSCCEESCHHHHHHCSSCCEEEECSCTTT
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHH-hhCCCCceECCHHHHhcCCCCCEEEEeCChHH
Confidence            58999999999997 77777765 77865 6677542211 111245566799999975  899999999543

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=97.47  E-value=0.00031  Score=62.37  Aligned_cols=89  Identities=17%  Similarity=0.132  Sum_probs=66.7

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceec-------CCHHhhcC-----cCCEEEEcCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-------EDLDTMLP-----KCDIVVVNTP  101 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-------~~l~ell~-----~aDiVvl~lp  101 (240)
                      .|.+|.|+|.|.+|..+++.++.+|+ +|++.++++...+.++++|+..+       .++.+.+.     ..|+|+-++.
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g  270 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIG  270 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEECCC
Confidence            58899999999999999999999999 79999987767777777886422       12333222     4799998886


Q ss_pred             CChhhhhcccHHHHccCCCC-CEEEEcC
Q 026360          102 LTEKTRGMFDKDRIAKMKKG-VLIVNNA  128 (240)
Q Consensus       102 ~~~~t~~~i~~~~l~~mk~g-ailIN~s  128 (240)
                      ..+.     ....++.++++ ..+|.++
T Consensus       271 ~~~~-----~~~~~~~l~~~~G~iv~~G  293 (374)
T 2jhf_A          271 RLDT-----MVTALSCCQEAYGVSVIVG  293 (374)
T ss_dssp             CHHH-----HHHHHHHBCTTTCEEEECS
T ss_pred             CHHH-----HHHHHHHhhcCCcEEEEec
Confidence            3211     23566778998 8888886

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=97.47  E-value=0.00036  Score=61.56  Aligned_cols=96  Identities=13%  Similarity=0.117  Sum_probs=72.4

Q ss_pred             ccCCCeEEEEccC--hHHHHHHHHhccCCCEEEEEcCCCCC-hh-H---H----HhcC--ceecCCHHhhcCcCCEEEEc
Q 026360           33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKMD-PQ-L---E----KETG--AKFEEDLDTMLPKCDIVVVN   99 (240)
Q Consensus        33 ~l~g~~vgIIG~G--~iG~~~A~~l~~~G~~V~~~d~~~~~-~~-~---~----~~~g--~~~~~~l~ell~~aDiVvl~   99 (240)
                      .+.|.+|+++|=|  +++++++..+..+|++|.+..|.... .+ .   +    +..|  +...+++++.++++|+|..-
T Consensus       152 ~l~gl~ia~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd  231 (333)
T 1duv_G          152 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD  231 (333)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CCCCcEEEEECCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEECHHHHhCCCCEEEeC
Confidence            5789999999975  99999999999999999999885422 11 1   1    1446  44568999999999999885


Q ss_pred             CCCC-----h--h------hhhcccHHHHccC-CCCCEEEEcC
Q 026360          100 TPLT-----E--K------TRGMFDKDRIAKM-KKGVLIVNNA  128 (240)
Q Consensus       100 lp~~-----~--~------t~~~i~~~~l~~m-k~gailIN~s  128 (240)
                      .=..     +  .      ...-++.+.++.+ ||+++|..+.
T Consensus       232 ~w~smg~~~~~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcL  274 (333)
T 1duv_G          232 VWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCL  274 (333)
T ss_dssp             CSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             CccccCccccchHHHHHHhhccccCHHHHHhccCCCcEEECCC
Confidence            4210     1  1      1245688999999 9999998875

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=97.47  E-value=0.00022  Score=62.73  Aligned_cols=95  Identities=16%  Similarity=0.099  Sum_probs=60.9

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCChhH----HHh------cCceecCCHHhhcCcCCEEEEcCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQL----EKE------TGAKFEEDLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~~----~~~------~g~~~~~~l~ell~~aDiVvl~lp~  102 (240)
                      ..++|+|||.|.||..+|..|...|.  +|..+|++....+.    ...      .++....+..+.+++||+|+++.+.
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~   83 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGA   83 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEeccc
Confidence            36799999999999999999988776  89999986432211    111      1222222334678999999999753


Q ss_pred             C--h-hhh--------hccc--HHHHccCCCCCEEEEcCC
Q 026360          103 T--E-KTR--------GMFD--KDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       103 ~--~-~t~--------~~i~--~~~l~~mk~gailIN~sr  129 (240)
                      .  + .++        .++.  .+.+....|++++++++.
T Consensus        84 p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtN  123 (326)
T 3pqe_A           84 NQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN  123 (326)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCC
Confidence            2  1 111        1111  123344568999999984

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=97.47  E-value=0.00033  Score=63.85  Aligned_cols=68  Identities=19%  Similarity=0.291  Sum_probs=50.1

Q ss_pred             CCeEEEEccChHHHHHHHHhccC-CCEEE-EEcCCCCChhHHH----hcC---ceecC----CHHhhcC--cCCEEEEcC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQLEK----ETG---AKFEE----DLDTMLP--KCDIVVVNT  100 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~-G~~V~-~~d~~~~~~~~~~----~~g---~~~~~----~l~ell~--~aDiVvl~l  100 (240)
                      -.+|||||+|.||+..+..+... |++|. ++|+++...+.+.    ..|   ...+.    +++++++  +.|+|++++
T Consensus        20 ~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~t   99 (444)
T 2ixa_A           20 KVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSS   99 (444)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECC
T ss_pred             CceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcC
Confidence            45899999999999999988765 67754 6787654333322    234   35556    8999997  589999999


Q ss_pred             CCC
Q 026360          101 PLT  103 (240)
Q Consensus       101 p~~  103 (240)
                      |..
T Consensus       100 p~~  102 (444)
T 2ixa_A          100 PWE  102 (444)
T ss_dssp             CGG
T ss_pred             CcH
Confidence            944

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=97.46  E-value=0.00031  Score=62.30  Aligned_cols=89  Identities=18%  Similarity=0.089  Sum_probs=67.4

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceec-------CCHHhhcC-----cCCEEEEcCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-------EDLDTMLP-----KCDIVVVNTP  101 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-------~~l~ell~-----~aDiVvl~lp  101 (240)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++.+.+.++++|+..+       .++.+.+.     ..|+|+-++.
T Consensus       191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g  270 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAG  270 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence            58899999999999999999999999 79999987777777788886422       12333222     5899999886


Q ss_pred             CChhhhhcccHHHHccCCCC-CEEEEcC
Q 026360          102 LTEKTRGMFDKDRIAKMKKG-VLIVNNA  128 (240)
Q Consensus       102 ~~~~t~~~i~~~~l~~mk~g-ailIN~s  128 (240)
                      ..+ +    ....++.++++ ..+|.++
T Consensus       271 ~~~-~----~~~~~~~l~~~~G~iv~~G  293 (373)
T 1p0f_A          271 RIE-T----MMNALQSTYCGSGVTVVLG  293 (373)
T ss_dssp             CHH-H----HHHHHHTBCTTTCEEEECC
T ss_pred             CHH-H----HHHHHHHHhcCCCEEEEEc
Confidence            321 1    24567788998 8898887

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=97.46  E-value=0.00035  Score=62.05  Aligned_cols=90  Identities=16%  Similarity=0.061  Sum_probs=67.6

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceec-------CCHHhhcC-----cCCEEEEcCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-------EDLDTMLP-----KCDIVVVNTP  101 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-------~~l~ell~-----~aDiVvl~lp  101 (240)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++...+.++++|+..+       .++.+.+.     ..|+|+-++.
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G  274 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG  274 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEECCC
Confidence            58899999999999999999999999 79999987777777788886422       12333222     4899998886


Q ss_pred             CChhhhhcccHHHHccCCCC-CEEEEcCC
Q 026360          102 LTEKTRGMFDKDRIAKMKKG-VLIVNNAR  129 (240)
Q Consensus       102 ~~~~t~~~i~~~~l~~mk~g-ailIN~sr  129 (240)
                      ..+ +    -...++.++++ ..+|.++-
T Consensus       275 ~~~-~----~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          275 TAQ-T----LKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             CHH-H----HHHHHHTBCTTTCEEEECCC
T ss_pred             CHH-H----HHHHHHHhhcCCCEEEEECC
Confidence            321 1    23567788998 88888863

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=97.46  E-value=0.00031  Score=61.17  Aligned_cols=92  Identities=16%  Similarity=0.225  Sum_probs=59.2

Q ss_pred             CeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhH-HHh--c-------C--ceecCCHHhhcCcCCEEEEcCCCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-EKE--T-------G--AKFEEDLDTMLPKCDIVVVNTPLT  103 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~-~~~--~-------g--~~~~~~l~ell~~aDiVvl~lp~~  103 (240)
                      ++|+|||.|.+|..+|..+...|. +|..+|.++...+. ..+  .       .  +....+. +.+++||+|+++.+..
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~p   81 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGAP   81 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCCC
Confidence            589999999999999999988886 89999987533221 110  0       1  2222566 6789999999998532


Q ss_pred             hh-----------hhhccc--HHHHccCCCCCEEEEcCC
Q 026360          104 EK-----------TRGMFD--KDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       104 ~~-----------t~~~i~--~~~l~~mk~gailIN~sr  129 (240)
                      ..           +..++.  .+.+....|++++++++-
T Consensus        82 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tN  120 (309)
T 1ur5_A           82 RKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN  120 (309)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCS
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCC
Confidence            21           001110  122333458999999754

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=97.46  E-value=0.00047  Score=60.61  Aligned_cols=95  Identities=16%  Similarity=0.264  Sum_probs=61.5

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChh-----HHHh-----cC--ceecCCHHhhcCcCCEEEEcC
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-----LEKE-----TG--AKFEEDLDTMLPKCDIVVVNT  100 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~-----~~~~-----~g--~~~~~~l~ell~~aDiVvl~l  100 (240)
                      ...++|+|||.|.+|..+|..+...|+ +|..+|+++...+     ....     ..  +....+. +.+++||+|+++.
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaa   83 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVTA   83 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEECC
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEcc
Confidence            456799999999999999999988888 9999998764321     1111     12  2223455 7899999999997


Q ss_pred             CCC--hh-hh--------hccc--HHHHccCCCCCEEEEcCC
Q 026360          101 PLT--EK-TR--------GMFD--KDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       101 p~~--~~-t~--------~~i~--~~~l~~mk~gailIN~sr  129 (240)
                      +..  +. ++        .++.  .+.+....|++++++++.
T Consensus        84 g~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN  125 (324)
T 3gvi_A           84 GVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN  125 (324)
T ss_dssp             SCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence            522  11 11        1111  012333458999999984

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=97.45  E-value=0.0003  Score=62.17  Aligned_cols=68  Identities=22%  Similarity=0.276  Sum_probs=49.1

Q ss_pred             CCeEEEEccChHHHHHHHHhccC--------CCEEE-EEcCCCCChh-HHHhcCc-eecCCHHhhcC--cCCEEEEcCCC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPF--------NCNLL-YHDRVKMDPQ-LEKETGA-KFEEDLDTMLP--KCDIVVVNTPL  102 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~--------G~~V~-~~d~~~~~~~-~~~~~g~-~~~~~l~ell~--~aDiVvl~lp~  102 (240)
                      --+|||||+|.||+..++.+++.        +++|+ ++|+++...+ .++++|+ ..+++++++++  +.|+|++++|.
T Consensus        25 kirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~IatP~  104 (393)
T 4fb5_A           25 PLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTTPN  104 (393)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECSCG
T ss_pred             CccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECCCh
Confidence            35899999999999888776542        56755 6688765544 3455676 45679999985  47999999994


Q ss_pred             C
Q 026360          103 T  103 (240)
Q Consensus       103 ~  103 (240)
                      .
T Consensus       105 ~  105 (393)
T 4fb5_A          105 Q  105 (393)
T ss_dssp             G
T ss_pred             H
Confidence            4

>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A

Probab=97.45  E-value=0.00056  Score=60.78  Aligned_cols=95  Identities=12%  Similarity=0.078  Sum_probs=69.4

Q ss_pred             ccCCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCCh-hH--------HHhcC--ceecCCHHhhcCcCCEEEEcC
Q 026360           33 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDP-QL--------EKETG--AKFEEDLDTMLPKCDIVVVNT  100 (240)
Q Consensus        33 ~l~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~-~~--------~~~~g--~~~~~~l~ell~~aDiVvl~l  100 (240)
                      .+.|++|++|| .+++.++++..+..+|++|.+..|....+ +.        +...|  +....+++ .++++|+|..-+
T Consensus       150 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~-av~~aDVVytd~  228 (355)
T 4a8p_A          150 KLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDV  228 (355)
T ss_dssp             CGGGCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEEEECCGG-GGTTCSEEEECC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEECCHH-HHcCCCEEEecc
Confidence            58899999999 68999999999999999999998864322 11        12335  34567899 999999998733


Q ss_pred             ----CCC----hh----h--hhcccHHHHccCCCCCEEEEcC
Q 026360          101 ----PLT----EK----T--RGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       101 ----p~~----~~----t--~~~i~~~~l~~mk~gailIN~s  128 (240)
                          ...    ++    .  ..-++.+.++.+|++++|..+.
T Consensus       229 w~smgq~~~~~~er~~~~~~~y~vt~ell~~ak~dai~MHcL  270 (355)
T 4a8p_A          229 WYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCL  270 (355)
T ss_dssp             SSEETTEECCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECS
T ss_pred             cccCcchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCC
Confidence                110    11    1  1446788888888888888875

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=97.45  E-value=0.0016  Score=59.40  Aligned_cols=108  Identities=16%  Similarity=0.233  Sum_probs=70.5

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEE-EEcCC-------CCChhHHH----hcC-------ceecCCHHhhc-C
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRV-------KMDPQLEK----ETG-------AKFEEDLDTML-P   91 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~-~~d~~-------~~~~~~~~----~~g-------~~~~~~l~ell-~   91 (240)
                      .+++|++|.|.|+|++|+.+|+.|...|.+|+ +.|.+       ..+.+...    ..|       .+.. +.++++ .
T Consensus       231 ~~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i-~~~ei~~~  309 (440)
T 3aog_A          231 LQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPL-PAADFWGL  309 (440)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEEC-CHHHHTTC
T ss_pred             CCccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEc-CchhhhcC
Confidence            46899999999999999999999999999988 44442       11222221    111       2333 455665 3


Q ss_pred             cCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus        92 ~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      .||+++-|..     .+.++.+....++ -.+|+-.+.+.+ ..++ .+.|.+..+.
T Consensus       310 ~~DIlvPcA~-----~n~i~~~na~~l~-ak~VvEgAN~p~-t~eA-~~iL~~~GI~  358 (440)
T 3aog_A          310 PVEFLVPAAL-----EKQITEQNAWRIR-ARIVAEGANGPT-TPAA-DDILLEKGVL  358 (440)
T ss_dssp             CCSEEEECSS-----SSCBCTTTGGGCC-CSEEECCSSSCB-CHHH-HHHHHHHTCE
T ss_pred             CCcEEEecCC-----cCccchhhHHHcC-CcEEEecCcccc-CHHH-HHHHHHCCCE
Confidence            6999999875     4556666666663 356666666664 5444 3556665555

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=97.44  E-value=0.00013  Score=63.90  Aligned_cols=95  Identities=17%  Similarity=0.169  Sum_probs=60.2

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCChhH-HH---h------cCceecCCHHhhcCcCCEEEEcCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQL-EK---E------TGAKFEEDLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~~-~~---~------~g~~~~~~l~ell~~aDiVvl~lp~  102 (240)
                      ..++|+|||.|.+|..++..+...|.  +|..+|.++...+. +.   .      ..+....+..+.+++||+|+++.+.
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag~   84 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGA   84 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCCC
Confidence            35799999999999999998886664  89999986422111 11   1      1112222446779999999999864


Q ss_pred             Chhh---h--------hccc--HHHHccCCCCCEEEEcCC
Q 026360          103 TEKT---R--------GMFD--KDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       103 ~~~t---~--------~~i~--~~~l~~mk~gailIN~sr  129 (240)
                      ....   +        .++.  .+.+....|++++++++-
T Consensus        85 ~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN  124 (317)
T 3d0o_A           85 AQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATN  124 (317)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            3211   0        1111  122334478999999763

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=97.43  E-value=0.00033  Score=62.02  Aligned_cols=66  Identities=18%  Similarity=0.294  Sum_probs=49.7

Q ss_pred             CeEEEEccChHHHH-HHHHhccC-CCEEE-EEcCCCCChhHHHhc-CceecCCHHhhcC--cCCEEEEcCCCCh
Q 026360           37 KTVGTVGCGRIGKL-LLQRLKPF-NCNLL-YHDRVKMDPQLEKET-GAKFEEDLDTMLP--KCDIVVVNTPLTE  104 (240)
Q Consensus        37 ~~vgIIG~G~iG~~-~A~~l~~~-G~~V~-~~d~~~~~~~~~~~~-g~~~~~~l~ell~--~aDiVvl~lp~~~  104 (240)
                      .+|||||+|.||+. .+..++.. +++|. ++|+++  ....... +...+.+++++++  +.|+|++++|...
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~--~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~   77 (358)
T 3gdo_A            6 IKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRT--EEVKRDFPDAEVVHELEEITNDPAIELVIVTTPSGL   77 (358)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCH--HHHHHHCTTSEEESSTHHHHTCTTCCEEEECSCTTT
T ss_pred             ceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCH--HHHHhhCCCCceECCHHHHhcCCCCCEEEEcCCcHH
Confidence            58999999999997 67777765 77865 567654  2233344 5666789999998  6899999999543

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=97.42  E-value=0.00028  Score=62.13  Aligned_cols=96  Identities=17%  Similarity=0.124  Sum_probs=61.4

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCChhH-HHh--------cCceecCCHHhhcCcCCEEEEcCCC
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQL-EKE--------TGAKFEEDLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~~-~~~--------~g~~~~~~l~ell~~aDiVvl~lp~  102 (240)
                      -.+++|+|||.|.||..+|..+...|.  ++..+|.++...+. +.+        .+.....+..+.+++||+|+++...
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~   86 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGA   86 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCC
Confidence            357899999999999999999987776  89999985422210 000        0222223445779999999998753


Q ss_pred             Ch---hhh--------hccc--HHHHccCCCCCEEEEcCC
Q 026360          103 TE---KTR--------GMFD--KDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       103 ~~---~t~--------~~i~--~~~l~~mk~gailIN~sr  129 (240)
                      ..   .++        .++.  .+.+....|++++++++.
T Consensus        87 ~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtN  126 (326)
T 3vku_A           87 PQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN  126 (326)
T ss_dssp             C----------------CHHHHHHHHHTTTCCSEEEECSS
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccC
Confidence            21   111        1111  123444568999999974

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=97.42  E-value=0.00034  Score=61.06  Aligned_cols=67  Identities=18%  Similarity=0.207  Sum_probs=50.9

Q ss_pred             CeEEEEcc-ChHHHHHHHHhccCCCEE-EEEcCCCCChhHHHhc-CceecCCHHhhc-----------CcCCEEEEcCCC
Q 026360           37 KTVGTVGC-GRIGKLLLQRLKPFNCNL-LYHDRVKMDPQLEKET-GAKFEEDLDTML-----------PKCDIVVVNTPL  102 (240)
Q Consensus        37 ~~vgIIG~-G~iG~~~A~~l~~~G~~V-~~~d~~~~~~~~~~~~-g~~~~~~l~ell-----------~~aDiVvl~lp~  102 (240)
                      .++||||+ |.||+..+..++..+.++ .++|+++......... +...+.++++++           .+.|+|++++|.
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP~   83 (318)
T 3oa2_A            4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSPN   83 (318)
T ss_dssp             CEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSCG
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCCc
Confidence            58999999 789999999999888885 4667776543333333 456667899887           569999999994


Q ss_pred             C
Q 026360          103 T  103 (240)
Q Consensus       103 ~  103 (240)
                      .
T Consensus        84 ~   84 (318)
T 3oa2_A           84 Y   84 (318)
T ss_dssp             G
T ss_pred             H
Confidence            3

>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A

Probab=97.42  E-value=0.001  Score=58.38  Aligned_cols=96  Identities=14%  Similarity=0.123  Sum_probs=71.1

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCC--hhHHH-------hcC--ceecCCHHhhcCcCCEEEEcC
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMD--PQLEK-------ETG--AKFEEDLDTMLPKCDIVVVNT  100 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~--~~~~~-------~~g--~~~~~~l~ell~~aDiVvl~l  100 (240)
                      .+.|.+|++||= .++.++++..+..+|++|.+..|....  .+...       +.|  +....+++++++++|+|..-+
T Consensus       152 ~l~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~d~  231 (321)
T 1oth_A          152 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDT  231 (321)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             CcCCcEEEEECCchhhHHHHHHHHHHcCCeEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhccCCEEEEec
Confidence            589999999996 569999999999999999999986532  21111       234  455689999999999999843


Q ss_pred             ----CCChh--------hhhcccHHHHccCCCCCEEEEcC
Q 026360          101 ----PLTEK--------TRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       101 ----p~~~~--------t~~~i~~~~l~~mk~gailIN~s  128 (240)
                          ....+        ...-++.+.++.+||+++|..+.
T Consensus       232 w~s~g~e~~~~~~~~~~~~y~v~~~~l~~a~~dai~mH~l  271 (321)
T 1oth_A          232 WISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCL  271 (321)
T ss_dssp             SSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             cccccchhhhHHHHHhccCceECHHHHhhcCCCCEEECCC
Confidence                21111        11346888999999999998875

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=97.42  E-value=0.00024  Score=65.67  Aligned_cols=67  Identities=15%  Similarity=0.203  Sum_probs=51.1

Q ss_pred             CCeEEEEcc----ChHHHHHHHHhccC--CCEEE-EEcCCCCChh-HHHhcCce---ecCCHHhhcC--cCCEEEEcCCC
Q 026360           36 GKTVGTVGC----GRIGKLLLQRLKPF--NCNLL-YHDRVKMDPQ-LEKETGAK---FEEDLDTMLP--KCDIVVVNTPL  102 (240)
Q Consensus        36 g~~vgIIG~----G~iG~~~A~~l~~~--G~~V~-~~d~~~~~~~-~~~~~g~~---~~~~l~ell~--~aDiVvl~lp~  102 (240)
                      -.+|||||+    |.||+..+..++..  +++|+ ++|+++...+ .++..|+.   .+.+++++++  +.|+|++++|.
T Consensus        39 ~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~tp~  118 (479)
T 2nvw_A           39 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVKV  118 (479)
T ss_dssp             CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSCH
T ss_pred             cCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcCCc
Confidence            468999999    99999999999875  77764 6787653332 33445653   5679999995  69999999994

>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}

Probab=97.42  E-value=0.0011  Score=58.75  Aligned_cols=96  Identities=13%  Similarity=0.119  Sum_probs=68.5

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCC-hhH-H---Hh--------cCceecCCHHhhcCcCCEEEE
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMD-PQL-E---KE--------TGAKFEEDLDTMLPKCDIVVV   98 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~-~~~-~---~~--------~g~~~~~~l~ell~~aDiVvl   98 (240)
                      .|.|++|++||= -++.++++..+..+|++|.+..|.... ++. .   ++        .++....+++++++++|+|+.
T Consensus       185 ~l~glkva~vGD~~nva~Sl~~~l~~lG~~v~~~~P~~~~~~~~i~~~~~~~a~~~~~g~~~~~~~d~~eav~~aDVvyt  264 (353)
T 3sds_A          185 GLEGLKIAWVGDANNVLFDLAIAATKMGVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQTTVPEVAVKDADVIVT  264 (353)
T ss_dssp             SCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHTTCSSCCCEEEESCHHHHTTTCSEEEE
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHhhhhccCCCeEEEECCHHHHhcCCCEEEe
Confidence            469999999994 479999999999999999999986432 221 1   11        134556799999999999987


Q ss_pred             cC--CCChh----------hhhcccHHHHcc--CCCCCEEEEcC
Q 026360           99 NT--PLTEK----------TRGMFDKDRIAK--MKKGVLIVNNA  128 (240)
Q Consensus        99 ~l--p~~~~----------t~~~i~~~~l~~--mk~gailIN~s  128 (240)
                      -.  +...+          ...-++.+.++.  +|++++|..+.
T Consensus       265 d~w~smg~E~~~~~r~~~~~~y~vt~ell~~~~ak~~ai~MHcL  308 (353)
T 3sds_A          265 DTWISMGQETEKIKRLEAFKDFKVTSELAKRGGAKENWKFMHCL  308 (353)
T ss_dssp             CCC--------CHHHHHHTTTCCBCHHHHHHHTCCTTCEEEECS
T ss_pred             CCccCCchhhHHHHHHHHhhCceecHHHHhhcccCCCcEEECCC
Confidence            43  21111          113468888887  88888888775

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=97.41  E-value=0.00031  Score=62.48  Aligned_cols=89  Identities=15%  Similarity=0.109  Sum_probs=67.5

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceec-------CCHHhhcC-----cCCEEEEcCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-------EDLDTMLP-----KCDIVVVNTP  101 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-------~~l~ell~-----~aDiVvl~lp  101 (240)
                      .|.+|.|+|.|.+|...++.++..|+ +|++.++++.+.+.++++|+..+       .++.+.+.     ..|+|+-++.
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g  272 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIG  272 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCC
Confidence            58899999999999999999999999 79999988877788888887432       22322222     4899998887


Q ss_pred             CChhhhhcccHHHHccCCCC-CEEEEcC
Q 026360          102 LTEKTRGMFDKDRIAKMKKG-VLIVNNA  128 (240)
Q Consensus       102 ~~~~t~~~i~~~~l~~mk~g-ailIN~s  128 (240)
                      ..+     .....++.++++ ..++.++
T Consensus       273 ~~~-----~~~~~~~~l~~g~G~iv~~G  295 (378)
T 3uko_A          273 NVS-----VMRAALECCHKGWGTSVIVG  295 (378)
T ss_dssp             CHH-----HHHHHHHTBCTTTCEEEECS
T ss_pred             CHH-----HHHHHHHHhhccCCEEEEEc
Confidence            321     123567788986 8888887

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=97.41  E-value=0.00033  Score=62.12  Aligned_cols=89  Identities=18%  Similarity=0.125  Sum_probs=67.2

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceec-------CCHHhhcC-----cCCEEEEcCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-------EDLDTMLP-----KCDIVVVNTP  101 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-------~~l~ell~-----~aDiVvl~lp  101 (240)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++...+.++++|+..+       .++.+.+.     ..|+|+-++.
T Consensus       190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g  269 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG  269 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEECCC
Confidence            58899999999999999999999999 79999987767777777776422       12333222     4899999886


Q ss_pred             CChhhhhcccHHHHccCCCC-CEEEEcC
Q 026360          102 LTEKTRGMFDKDRIAKMKKG-VLIVNNA  128 (240)
Q Consensus       102 ~~~~t~~~i~~~~l~~mk~g-ailIN~s  128 (240)
                      ..+.     ....++.++++ ..+|.++
T Consensus       270 ~~~~-----~~~~~~~l~~~~G~iv~~G  292 (373)
T 2fzw_A          270 NVKV-----MRAALEACHKGWGVSVVVG  292 (373)
T ss_dssp             CHHH-----HHHHHHTBCTTTCEEEECS
T ss_pred             cHHH-----HHHHHHhhccCCcEEEEEe
Confidence            3211     24567788998 8998887

>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A

Probab=97.41  E-value=0.0009  Score=59.66  Aligned_cols=96  Identities=14%  Similarity=0.134  Sum_probs=71.4

Q ss_pred             ccCCCeEEEEccC--hHHHHHHHHhccCCCEEEEEcCCCCCh----hH-------HHhcC--ceecCCHHhhcCcCCEEE
Q 026360           33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKMDP----QL-------EKETG--AKFEEDLDTMLPKCDIVV   97 (240)
Q Consensus        33 ~l~g~~vgIIG~G--~iG~~~A~~l~~~G~~V~~~d~~~~~~----~~-------~~~~g--~~~~~~l~ell~~aDiVv   97 (240)
                      .+.|++|+++|=|  +++++++..+..+|++|.+..|....+    +.       +...|  +....+++++++++|+|.
T Consensus       177 ~l~glkva~vGD~~nnva~Sl~~~~~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~d~~eav~~aDVVy  256 (365)
T 4amu_A          177 NLKNKKIVFIGDYKNNVGVSTMIGAAFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLRFSTDKILAAQDADVIY  256 (365)
T ss_dssp             SCTTCEEEEESSTTSHHHHHHHHHHHHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSCEEEEESCHHHHTTTCSEEE
T ss_pred             CCCCCEEEEECCCCcchHHHHHHHHHHcCCEEEEECCccccCCCcHHHHHHHHHHHHHcCCEEEEECCHHHHhcCCCEEE
Confidence            4899999999976  899999999999999999998854222    11       22334  445679999999999998


Q ss_pred             EcC----CCChh---------hhhcccHHHHccCCCCCEEEEcC
Q 026360           98 VNT----PLTEK---------TRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus        98 l~l----p~~~~---------t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      .-+    ....+         ...-++.+.++.+||+++|..+.
T Consensus       257 td~W~smg~~~~~~~er~~~~~~y~vt~ell~~a~~dai~MHcL  300 (365)
T 4amu_A          257 TDVWVSLGEPFELFDKRIGELKNFQVDMNMIKAAKNDVIFLHCL  300 (365)
T ss_dssp             ECCSCCTTCCHHHHHHHHHHHTTCCBCHHHHHHSCTTCEEEECS
T ss_pred             ecccccCCchhhhHHHHHHHhcccccCHHHHHhcCCCcEEECCC
Confidence            742    11111         01346888999899999998876

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=97.40  E-value=0.00034  Score=60.48  Aligned_cols=106  Identities=14%  Similarity=0.135  Sum_probs=70.6

Q ss_pred             CCeEEEEcc-ChHHHHHHHHhccCCCEEE-EEcCCCCChhHHHhcCceecCCHHhhcC--cCCEEEEcCCCChhhhhccc
Q 026360           36 GKTVGTVGC-GRIGKLLLQRLKPFNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        36 g~~vgIIG~-G~iG~~~A~~l~~~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDiVvl~lp~~~~t~~~i~  111 (240)
                      .++|+|+|+ |++|+.+++.++..|++++ .++|.....   ...|+..+.+++++.+  ..|++++++|. +.+...+.
T Consensus         7 ~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~g~---~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~-~~~~~~~~   82 (288)
T 1oi7_A            7 ETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGM---EVLGVPVYDTVKEAVAHHEVDASIIFVPA-PAAADAAL   82 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC---EETTEEEESSHHHHHHHSCCSEEEECCCH-HHHHHHHH
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCCCc---eECCEEeeCCHHHHhhcCCCCEEEEecCH-HHHHHHHH
Confidence            578999998 9999999999988899843 566643111   1347777778999988  89999999992 22233332


Q ss_pred             HHHHccCCCCCEEEEcCCCc-ccCHHHHHHHHHhCCcc
Q 026360          112 KDRIAKMKKGVLIVNNARGA-IMDTQAVVDACSSGHIA  148 (240)
Q Consensus       112 ~~~l~~mk~gailIN~srg~-~vd~~aL~~aL~~g~i~  148 (240)
                       +..+ .+.. .+|..+.|- .-+++.+.++.++..+.
T Consensus        83 -ea~~-~Gi~-~vVi~t~G~~~~~~~~l~~~a~~~gi~  117 (288)
T 1oi7_A           83 -EAAH-AGIP-LIVLITEGIPTLDMVRAVEEIKALGSR  117 (288)
T ss_dssp             -HHHH-TTCS-EEEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred             -HHHH-CCCC-EEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence             3332 2222 255565552 23456788888877665

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=97.40  E-value=0.00056  Score=60.04  Aligned_cols=94  Identities=17%  Similarity=0.205  Sum_probs=60.4

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChh----HHHh------cC--ceecCCHHhhcCcCCEEEEcCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ----LEKE------TG--AKFEEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~----~~~~------~g--~~~~~~l~ell~~aDiVvl~lp  101 (240)
                      ..++|+|||.|.+|.++|..+...|+ +|..+|+++...+    ....      ..  +....+ .+.+++||+|+++.+
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d-~~a~~~aDvVIi~ag   82 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTND-YKDLENSDVVIVTAG   82 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC-GGGGTTCSEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCC-HHHHCCCCEEEEcCC
Confidence            45799999999999999999987777 9999998764322    1111      11  222234 478899999999974


Q ss_pred             CC--hh-hh--------hccc--HHHHccCCCCCEEEEcCC
Q 026360          102 LT--EK-TR--------GMFD--KDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       102 ~~--~~-t~--------~~i~--~~~l~~mk~gailIN~sr  129 (240)
                      ..  +. ++        .++.  .+.+....|++++++++.
T Consensus        83 ~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN  123 (321)
T 3p7m_A           83 VPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITN  123 (321)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             cCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence            32  10 11        1111  012333458999999963

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=97.37  E-value=0.00039  Score=64.28  Aligned_cols=114  Identities=18%  Similarity=0.206  Sum_probs=69.7

Q ss_pred             CCeEEEEccChH--HHHHHHHhc---cC-CCEEEEEcCCCCChhHH----H----hc----CceecCCHHhhcCcCCEEE
Q 026360           36 GKTVGTVGCGRI--GKLLLQRLK---PF-NCNLLYHDRVKMDPQLE----K----ET----GAKFEEDLDTMLPKCDIVV   97 (240)
Q Consensus        36 g~~vgIIG~G~i--G~~~A~~l~---~~-G~~V~~~d~~~~~~~~~----~----~~----g~~~~~~l~ell~~aDiVv   97 (240)
                      .++|+|||.|.+  |.++|..+.   ++ |.+|..||+++...+..    .    ..    .+....++++.+++||+|+
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~VI   82 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   82 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEEE
Confidence            469999999997  565566664   23 88999999975322111    0    11    1233468888899999999


Q ss_pred             EcCCCCh-----------h----hh----------------------hccc--HHHHccCCCCCEEEEcCCCcccCHHHH
Q 026360           98 VNTPLTE-----------K----TR----------------------GMFD--KDRIAKMKKGVLIVNNARGAIMDTQAV  138 (240)
Q Consensus        98 l~lp~~~-----------~----t~----------------------~~i~--~~~l~~mk~gailIN~srg~~vd~~aL  138 (240)
                      +++|...           .    .+                      .++.  .+.+....|++++||++-.--+-..++
T Consensus        83 iaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~t~~~  162 (480)
T 1obb_A           83 NTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLV  162 (480)
T ss_dssp             ECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHHHHH
T ss_pred             ECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH
Confidence            9997410           0    00                      0110  123444568999999987654444444


Q ss_pred             HHHHHhCCccEE
Q 026360          139 VDACSSGHIAGY  150 (240)
Q Consensus       139 ~~aL~~g~i~ga  150 (240)
                      .+ +...++.|.
T Consensus       163 ~k-~p~~rviG~  173 (480)
T 1obb_A          163 TR-TVPIKAVGF  173 (480)
T ss_dssp             HH-HSCSEEEEE
T ss_pred             HH-CCCCcEEec
Confidence            44 445556555

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=97.37  E-value=0.00017  Score=62.15  Aligned_cols=87  Identities=15%  Similarity=0.126  Sum_probs=65.5

Q ss_pred             CCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecC------CHHhhcCcCCEEEEcCCCChhhh
Q 026360           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE------DLDTMLPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        35 ~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~------~l~ell~~aDiVvl~lp~~~~t~  107 (240)
                      .|++|.|+|. |.+|..+++.++..|++|++.++++...+.++++|...+-      ++.+.+...|+++. +.. +   
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~-~---  199 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRG-K---  199 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSC-T---
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCH-H---
Confidence            4889999998 9999999999999999999999876666677777764221      12233367899988 763 1   


Q ss_pred             hcccHHHHccCCCCCEEEEcC
Q 026360          108 GMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~s  128 (240)
                        .....++.++++..++.++
T Consensus       200 --~~~~~~~~l~~~G~~v~~g  218 (302)
T 1iz0_A          200 --EVEESLGLLAHGGRLVYIG  218 (302)
T ss_dssp             --THHHHHTTEEEEEEEEEC-
T ss_pred             --HHHHHHHhhccCCEEEEEe
Confidence              2346778889988888886

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=97.37  E-value=0.00012  Score=67.21  Aligned_cols=69  Identities=20%  Similarity=0.178  Sum_probs=49.4

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH-hcC-ce----ecC---CHHhhcCcCCEEEEcCCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETG-AK----FEE---DLDTMLPKCDIVVVNTPLT  103 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~-~~g-~~----~~~---~l~ell~~aDiVvl~lp~~  103 (240)
                      .+++|+|+|.|.+|+.+++.|...|++|.+++++....+... ..+ +.    ...   +++++++++|+|+.++|..
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~   79 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYT   79 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccc
Confidence            478999999999999999999999999999998643222111 111 21    112   3457788999999999853

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}

Probab=97.36  E-value=0.00065  Score=58.81  Aligned_cols=69  Identities=17%  Similarity=0.127  Sum_probs=56.5

Q ss_pred             ccCCCeEEEEcc---ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCC
Q 026360           33 DLEGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        33 ~l~g~~vgIIG~---G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~  102 (240)
                      .+.|.+|+++|=   +++.++++..+..+|++|.+..|....++...+.|+....++++.++++|+|.. +-.
T Consensus       143 ~l~gl~va~vGDl~~~rva~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~g~~~~~d~~eav~~aDvvy~-~~~  214 (291)
T 3d6n_B          143 EVKDLRVLYVGDIKHSRVFRSGAPLLNMFGAKIGVCGPKTLIPRDVEVFKVDVFDDVDKGIDWADVVIW-LRL  214 (291)
T ss_dssp             CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTGGGGCEEEESSHHHHHHHCSEEEE-CCC
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEECCchhCCchHHHCCCEEEcCHHHHhCCCCEEEE-eCc
Confidence            489999999995   899999999999999999999885432222334577777899999999999998 543

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=97.36  E-value=0.00048  Score=60.59  Aligned_cols=90  Identities=16%  Similarity=0.183  Sum_probs=66.1

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec------CC-HHhh---c-----CcCCEEEEc
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE------ED-LDTM---L-----PKCDIVVVN   99 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~------~~-l~el---l-----~~aDiVvl~   99 (240)
                      .|.+|.|+|.|.+|...++.++.+|++|++.++++...+.++++|+..+      .+ .+++   .     ...|+|+.+
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~  247 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC  247 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEEC
Confidence            5899999999999999999999999999999987655666777776321      11 1222   2     358999988


Q ss_pred             CCCChhhhhcccHHHHccCCCCCEEEEcCC
Q 026360          100 TPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       100 lp~~~~t~~~i~~~~l~~mk~gailIN~sr  129 (240)
                      +...+.     ....++.++++..+|.++.
T Consensus       248 ~g~~~~-----~~~~~~~l~~~G~iv~~G~  272 (352)
T 1e3j_A          248 SGNEKC-----ITIGINITRTGGTLMLVGM  272 (352)
T ss_dssp             SCCHHH-----HHHHHHHSCTTCEEEECSC
T ss_pred             CCCHHH-----HHHHHHHHhcCCEEEEEec
Confidence            863211     2355677899999998874

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=97.34  E-value=0.00015  Score=63.84  Aligned_cols=95  Identities=16%  Similarity=0.097  Sum_probs=59.3

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCChhH-HHhc--------CceecCCHHhhcCcCCEEEEcCCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQL-EKET--------GAKFEEDLDTMLPKCDIVVVNTPLT  103 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~~-~~~~--------g~~~~~~l~ell~~aDiVvl~lp~~  103 (240)
                      ..+||+|||.|.+|.+++..+...+.  ++..+|......+. +.++        .+....+..+.+++||+|+++.+..
T Consensus         8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~~   87 (326)
T 2zqz_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGAP   87 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCCC
Confidence            35799999999999999998876665  89999986422211 1111        1112224467799999999998643


Q ss_pred             hhh-----------hhccc--HHHHccCCCCCEEEEcCC
Q 026360          104 EKT-----------RGMFD--KDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       104 ~~t-----------~~~i~--~~~l~~mk~gailIN~sr  129 (240)
                      ...           ..++.  .+.+....|++++++++-
T Consensus        88 ~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  126 (326)
T 2zqz_A           88 QKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN  126 (326)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            221           01110  012233368999999853

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=97.34  E-value=0.00028  Score=61.92  Aligned_cols=67  Identities=16%  Similarity=0.281  Sum_probs=49.0

Q ss_pred             CeEEEEccChHHHH-HHHHhccC-CCEEE-EEcCCCCCh-hHHHhcCc-eecCCHHhhcC--cCCEEEEcCCCC
Q 026360           37 KTVGTVGCGRIGKL-LLQRLKPF-NCNLL-YHDRVKMDP-QLEKETGA-KFEEDLDTMLP--KCDIVVVNTPLT  103 (240)
Q Consensus        37 ~~vgIIG~G~iG~~-~A~~l~~~-G~~V~-~~d~~~~~~-~~~~~~g~-~~~~~l~ell~--~aDiVvl~lp~~  103 (240)
                      .++||||+|.||+. .+..++.. +++|+ ++|+++... +.++++|+ ..+++++++++  +.|+|++++|..
T Consensus        24 irigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~~   97 (350)
T 4had_A           24 LRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTS   97 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCGG
T ss_pred             cEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCCc
Confidence            48999999999986 46666654 67866 567765333 33455676 45679999985  479999999943

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=97.33  E-value=0.00069  Score=62.09  Aligned_cols=100  Identities=21%  Similarity=0.223  Sum_probs=70.9

Q ss_pred             cccCCCeEEEEccC----------hHHHHHHHHhccCCCEEEEEcCCCCChhHH-Hhc-CceecCCHHhhcCcCCEEEEc
Q 026360           32 YDLEGKTVGTVGCG----------RIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KET-GAKFEEDLDTMLPKCDIVVVN   99 (240)
Q Consensus        32 ~~l~g~~vgIIG~G----------~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~-~~~-g~~~~~~l~ell~~aDiVvl~   99 (240)
                      ..+.|++|+|+|+.          .-...+++.|...|++|.+|||.-  .+.. ..+ ++..+.++++.++.+|+|+++
T Consensus       318 ~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~--~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~  395 (446)
T 4a7p_A          318 GDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEG--VEQASKMLTDVEFVENPYAAADGADALVIV  395 (446)
T ss_dssp             SCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSC--HHHHGGGCSSCCBCSCHHHHHTTBSEEEEC
T ss_pred             ccCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCC--CHhHHHhcCCceEecChhHHhcCCCEEEEe
Confidence            35899999999986          567889999999999999999854  2222 222 566677889999999999999


Q ss_pred             CCCChhhhhcccHH-HHccCCCCCEEEEcCCCcccCHHHH
Q 026360          100 TPLTEKTRGMFDKD-RIAKMKKGVLIVNNARGAIMDTQAV  138 (240)
Q Consensus       100 lp~~~~t~~~i~~~-~l~~mk~gailIN~srg~~vd~~aL  138 (240)
                      +.-. +.+. ++-+ ..+.|+ +.+++|+ |+ +.+.+.+
T Consensus       396 t~~~-~f~~-~d~~~~~~~~~-~~~i~D~-r~-~~~~~~~  430 (446)
T 4a7p_A          396 TEWD-AFRA-LDLTRIKNSLK-SPVLVDL-RN-IYPPAEL  430 (446)
T ss_dssp             SCCT-TTTS-CCHHHHHTTBS-SCBEECS-SC-CSCHHHH
T ss_pred             eCCH-Hhhc-CCHHHHHHhcC-CCEEEEC-CC-CCCHHHH
Confidence            8743 2233 3444 344465 4678885 54 3455444

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=97.33  E-value=0.00044  Score=62.16  Aligned_cols=95  Identities=18%  Similarity=0.184  Sum_probs=65.7

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceec-----CCHHh----hc--CcCCEEEEcCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDT----ML--PKCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e----ll--~~aDiVvl~lp~  102 (240)
                      .|.+|.|+|.|.+|...++.++..|+ +|++.++++.+.+.++++|+..+     .++.+    +.  ...|+|+-++..
T Consensus       213 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g~  292 (404)
T 3ip1_A          213 PGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATGV  292 (404)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCCC
Confidence            58999999999999999999999999 89999987766677778886432     12222    22  248999998874


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEEcCC
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN~sr  129 (240)
                      ...+...+..-....++++..++.++-
T Consensus       293 ~~~~~~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          293 PQLVWPQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             HHHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred             cHHHHHHHHHHHHhccCCCcEEEEeCC
Confidence            322211111111133389999999874

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=97.32  E-value=0.00024  Score=62.79  Aligned_cols=90  Identities=14%  Similarity=0.156  Sum_probs=66.7

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH-hcCceec---CCH---HhhcCcCCEEEEcCCCChhhh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFE---EDL---DTMLPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~~~---~~l---~ell~~aDiVvl~lp~~~~t~  107 (240)
                      .|.+|.|+|.|.+|...++.++.+|++|++.++++...+.+. ++|+..+   .+.   .++....|+|+-++....   
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~~~---  256 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHH---  256 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCSCC---
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCChH---
Confidence            689999999999999999999999999999998765555555 6776421   222   233346899998886321   


Q ss_pred             hcccHHHHccCCCCCEEEEcCC
Q 026360          108 GMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~sr  129 (240)
                        .....++.++++..++.++.
T Consensus       257 --~~~~~~~~l~~~G~iv~~G~  276 (357)
T 2cf5_A          257 --ALEPYLSLLKLDGKLILMGV  276 (357)
T ss_dssp             --CSHHHHTTEEEEEEEEECSC
T ss_pred             --HHHHHHHHhccCCEEEEeCC
Confidence              12456778899999998873

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=97.31  E-value=0.00021  Score=62.62  Aligned_cols=91  Identities=22%  Similarity=0.237  Sum_probs=66.7

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-----CCHHhhc----CcCCEEEEcCCCChh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML----PKCDIVVVNTPLTEK  105 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell----~~aDiVvl~lp~~~~  105 (240)
                      .|++|.|+|.|.+|..+++.++..|++|++.++++...+.++++|+..+     .++.+.+    ...|+|+.++...+.
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~~~~  243 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPA  243 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCCCHHH
Confidence            5889999999999999999999999999999987655666667776422     1222222    468999888863221


Q ss_pred             hhhcccHHHHccCCCCCEEEEcCCC
Q 026360          106 TRGMFDKDRIAKMKKGVLIVNNARG  130 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailIN~srg  130 (240)
                           ....++.++++..++.++..
T Consensus       244 -----~~~~~~~l~~~G~~v~~g~~  263 (339)
T 1rjw_A          244 -----FQSAYNSIRRGGACVLVGLP  263 (339)
T ss_dssp             -----HHHHHHHEEEEEEEEECCCC
T ss_pred             -----HHHHHHHhhcCCEEEEeccc
Confidence                 24566778888899988743

>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}

Probab=97.31  E-value=0.001  Score=59.18  Aligned_cols=96  Identities=20%  Similarity=0.259  Sum_probs=72.1

Q ss_pred             ccCCCeEEEEccC--hHHHHHHHHhccCCCEEEEEcCCCCCh-h-H---HH----hcC--ceecCCHHhhcCcCCEEEEc
Q 026360           33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKMDP-Q-L---EK----ETG--AKFEEDLDTMLPKCDIVVVN   99 (240)
Q Consensus        33 ~l~g~~vgIIG~G--~iG~~~A~~l~~~G~~V~~~d~~~~~~-~-~---~~----~~g--~~~~~~l~ell~~aDiVvl~   99 (240)
                      .+.|.+|+++|=|  +++++++..+..+|++|.+..|....+ + .   ++    +.|  +....+++++++++|+|..-
T Consensus       173 ~l~gl~va~vGD~~~rva~Sl~~~~~~lG~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd  252 (359)
T 2w37_A          173 KLQGLTLTFMGDGRNNVANSLLVTGAILGVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVITDDLDEGLKGSNVVYTD  252 (359)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHHTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCeEEEEECCCccchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhcCCCEEEEc
Confidence            5899999999975  999999999999999999998854221 1 1   11    345  45568999999999999885


Q ss_pred             CC----CC--hh-----hhhcccHHHHccCC---CCCEEEEcC
Q 026360          100 TP----LT--EK-----TRGMFDKDRIAKMK---KGVLIVNNA  128 (240)
Q Consensus       100 lp----~~--~~-----t~~~i~~~~l~~mk---~gailIN~s  128 (240)
                      .=    ..  ++     ...-++.+.++.+|   |+++|..+.
T Consensus       253 ~w~smg~ee~~er~~~~~~y~v~~ell~~ak~~~~dai~MHcL  295 (359)
T 2w37_A          253 VWVSMGESNWEERVKELTPYQVNMEAMKKTGTPDDQLIFMHCL  295 (359)
T ss_dssp             CSCCTTCTTHHHHHHHHGGGCBCHHHHHTTCCCGGGCEEEECS
T ss_pred             ccccccccchHHHHHHhhccccCHHHHHhhCCCCCCEEEECCC
Confidence            42    10  11     12456888999899   899998876

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=97.30  E-value=0.00013  Score=64.21  Aligned_cols=89  Identities=17%  Similarity=0.222  Sum_probs=65.0

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceec-----CCHHhhc------CcCCEEEEcCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDTML------PKCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell------~~aDiVvl~lp~  102 (240)
                      .|++|.|+|.|.+|..+++.++..|+ +|++.++++...+.++++|+..+     .++.+.+      ...|+|+.+++.
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~  246 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGA  246 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence            78999999999999999999999999 89999987655566667775421     1222222      247999888863


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEEcC
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      .+.     ....++.++++..++.++
T Consensus       247 ~~~-----~~~~~~~l~~~G~iv~~g  267 (348)
T 2d8a_A          247 PKA-----LEQGLQAVTPAGRVSLLG  267 (348)
T ss_dssp             HHH-----HHHHHHHEEEEEEEEECC
T ss_pred             HHH-----HHHHHHHHhcCCEEEEEc
Confidence            221     234566788888888886

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=97.30  E-value=0.0024  Score=57.97  Aligned_cols=109  Identities=20%  Similarity=0.274  Sum_probs=71.8

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhcc-CCCEEE-EEcCC-------CCChhHHH----hcC-------ceecCCHHhhc
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKP-FNCNLL-YHDRV-------KMDPQLEK----ETG-------AKFEEDLDTML   90 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~-~G~~V~-~~d~~-------~~~~~~~~----~~g-------~~~~~~l~ell   90 (240)
                      +.++.|+++.|.|+|++|+..|+.|.. .|.+|+ +.|.+       ..+.+...    ..+       .+.. +.++++
T Consensus       204 g~~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~-~~~eil  282 (415)
T 2tmg_A          204 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERI-TNEELL  282 (415)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEE-CHHHHT
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEc-Cchhhh
Confidence            446899999999999999999999998 999988 33432       11222221    111       2333 455655


Q ss_pred             -CcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360           91 -PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus        91 -~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                       ..||+++-|..     .+.++.+....++ -.+++-.+.+++ ..++ .+.|.+..+.
T Consensus       283 ~~~~DIliP~A~-----~n~i~~~~a~~l~-ak~V~EgAN~p~-t~~a-~~~l~~~Gi~  333 (415)
T 2tmg_A          283 ELDVDILVPAAL-----EGAIHAGNAERIK-AKAVVEGANGPT-TPEA-DEILSRRGIL  333 (415)
T ss_dssp             TCSCSEEEECSS-----TTSBCHHHHTTCC-CSEEECCSSSCB-CHHH-HHHHHHTTCE
T ss_pred             cCCCcEEEecCC-----cCccCcccHHHcC-CeEEEeCCCccc-CHHH-HHHHHHCCCE
Confidence             47999999886     4567777777774 345666666664 5444 3556666665

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=97.28  E-value=0.0003  Score=62.05  Aligned_cols=90  Identities=20%  Similarity=0.183  Sum_probs=66.4

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceec-C-C---HH----hhc----CcCCEEEEcC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-E-D---LD----TML----PKCDIVVVNT  100 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-~-~---l~----ell----~~aDiVvl~l  100 (240)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++...+.++++|+..+ + +   .+    ++.    ...|+|+-++
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~~  250 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT  250 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEECC
Confidence            58899999999999999999999999 89999987655667777776421 1 1   11    111    3589999988


Q ss_pred             CCChhhhhcccHHHHccCCCCCEEEEcCC
Q 026360          101 PLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       101 p~~~~t~~~i~~~~l~~mk~gailIN~sr  129 (240)
                      ...+.     ....++.++++..++.++-
T Consensus       251 g~~~~-----~~~~~~~l~~~G~iv~~G~  274 (356)
T 1pl8_A          251 GAEAS-----IQAGIYATRSGGTLVLVGL  274 (356)
T ss_dssp             CCHHH-----HHHHHHHSCTTCEEEECSC
T ss_pred             CChHH-----HHHHHHHhcCCCEEEEEec
Confidence            63211     2356778899999998874

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=97.28  E-value=0.0002  Score=63.39  Aligned_cols=88  Identities=15%  Similarity=0.053  Sum_probs=64.6

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-----CCHHhh----c--CcCCEEEEcCCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTM----L--PKCDIVVVNTPLT  103 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~el----l--~~aDiVvl~lp~~  103 (240)
                      .|.+|.|+|.|.+|...++.++..|++|++.++++...+.++++|+..+     .++.+.    .  ...|+|+-++. .
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~vid~~g-~  267 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHILEIAG-G  267 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEEETT-S
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCC-h
Confidence            5899999999999999999999999999999987656666777776422     122221    1  15788888876 1


Q ss_pred             hhhhhcccHHHHccCCCCCEEEEcC
Q 026360          104 EKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       104 ~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      +     .....++.++++..++.++
T Consensus       268 ~-----~~~~~~~~l~~~G~iv~~G  287 (363)
T 3uog_A          268 A-----GLGQSLKAVAPDGRISVIG  287 (363)
T ss_dssp             S-----CHHHHHHHEEEEEEEEEEC
T ss_pred             H-----HHHHHHHHhhcCCEEEEEe
Confidence            1     2235667788888888876

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=97.27  E-value=0.00024  Score=62.30  Aligned_cols=94  Identities=15%  Similarity=0.117  Sum_probs=59.1

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCChhH-HHhc--------CceecCCHHhhcCcCCEEEEcCCCCh
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQL-EKET--------GAKFEEDLDTMLPKCDIVVVNTPLTE  104 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~~-~~~~--------g~~~~~~l~ell~~aDiVvl~lp~~~  104 (240)
                      .++|+|||.|.+|.+++..+...+.  ++..+|......+. +.++        .+....+..+.+++||+|+++.+...
T Consensus         5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~~   84 (318)
T 1ez4_A            5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQ   84 (318)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC--
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCCC
Confidence            3699999999999999999887665  89999986422221 1111        11222244677999999999986432


Q ss_pred             hh-----------hhccc--HHHHccCCCCCEEEEcCC
Q 026360          105 KT-----------RGMFD--KDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       105 ~t-----------~~~i~--~~~l~~mk~gailIN~sr  129 (240)
                      ..           ..++.  .+.+....|++++++++-
T Consensus        85 ~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  122 (318)
T 1ez4_A           85 KPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN  122 (318)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            11           11111  123334478999999853

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=97.26  E-value=0.00024  Score=65.56  Aligned_cols=115  Identities=15%  Similarity=0.094  Sum_probs=69.1

Q ss_pred             CCeEEEEccChH-HHHHHHHhccC-----CCEEEEEcCCCCChhHH--------Hhc--C--ceecCCHHhhcCcCCEEE
Q 026360           36 GKTVGTVGCGRI-GKLLLQRLKPF-----NCNLLYHDRVKMDPQLE--------KET--G--AKFEEDLDTMLPKCDIVV   97 (240)
Q Consensus        36 g~~vgIIG~G~i-G~~~A~~l~~~-----G~~V~~~d~~~~~~~~~--------~~~--g--~~~~~~l~ell~~aDiVv   97 (240)
                      .++|+|||.|.+ |.++|..|...     +.+|..||+++...+..        ...  .  +....++++.+++||+|+
T Consensus        28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~VV  107 (472)
T 1u8x_X           28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM  107 (472)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEEE
Confidence            469999999998 66666555444     66899999875322110        111  1  233458888999999999


Q ss_pred             EcCCCChh---hh----------------------------hccc--HHHHccCCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360           98 VNTPLTEK---TR----------------------------GMFD--KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (240)
Q Consensus        98 l~lp~~~~---t~----------------------------~~i~--~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~  144 (240)
                      +++|....   ++                            .++.  .+.+....|+++++|++-.-=+-..++.+....
T Consensus       108 iaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~~~k~~p~  187 (472)
T 1u8x_X          108 AHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPN  187 (472)
T ss_dssp             ECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHHHSTT
T ss_pred             EcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhCCC
Confidence            99986321   11                            0110  123444568999999986543333333333333


Q ss_pred             CCccEE
Q 026360          145 GHIAGY  150 (240)
Q Consensus       145 g~i~ga  150 (240)
                      .++.|.
T Consensus       188 ~rViG~  193 (472)
T 1u8x_X          188 SKILNI  193 (472)
T ss_dssp             CCEEEC
T ss_pred             CCEEEe
Confidence            355554

>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}

Probab=97.25  E-value=0.0017  Score=57.08  Aligned_cols=96  Identities=18%  Similarity=0.151  Sum_probs=70.4

Q ss_pred             ccCCCeEEEEccC--hHHHHHHHHhccCCCEEEEEcCCCCC--h-h-H---HH----h--cC--ceecCCHHhhcCcCCE
Q 026360           33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKMD--P-Q-L---EK----E--TG--AKFEEDLDTMLPKCDI   95 (240)
Q Consensus        33 ~l~g~~vgIIG~G--~iG~~~A~~l~~~G~~V~~~d~~~~~--~-~-~---~~----~--~g--~~~~~~l~ell~~aDi   95 (240)
                      .+.|++|+++|=|  ++.++++..+..+|++|.+..|....  + + .   ++    .  .|  +....++++.++++|+
T Consensus       158 ~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDv  237 (328)
T 3grf_A          158 GFKGIKFAYCGDSMNNVTYDLMRGCALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFHDCKKGCEGVDV  237 (328)
T ss_dssp             TGGGCCEEEESCCSSHHHHHHHHHHHHHTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEEEESSHHHHHTTCSE
T ss_pred             ccCCcEEEEeCCCCcchHHHHHHHHHHcCCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCeEEEEcCHHHHhcCCCE
Confidence            5889999999954  99999999999999999999885422  1 1 1   11    1  34  3456799999999999


Q ss_pred             EEEcC----C-CCh---h-----hhhcccHHHHccCCCCCEEEEcC
Q 026360           96 VVVNT----P-LTE---K-----TRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus        96 Vvl~l----p-~~~---~-----t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      |..-+    . ..+   +     ...-++.+.++.+|++++|..+.
T Consensus       238 vytd~W~sm~iq~er~~~~~~~~~~y~vt~~~l~~a~~~ai~mH~l  283 (328)
T 3grf_A          238 VYTDSWMSYHITKEQKEARLKVLTPFQVDDAVMAVTSKRSIFMNCL  283 (328)
T ss_dssp             EEECCCC--------CCTHHHHHGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             EEecCccccCCcHHHHHHHHHHhcCCCCCHHHHHhcCCCCEEECCC
Confidence            98642    2 111   0     12347889999999999998875

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=97.24  E-value=0.0015  Score=59.96  Aligned_cols=110  Identities=21%  Similarity=0.257  Sum_probs=68.5

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCCEEE-EEcC-------CCCChhHH------H--------h----c-Cceec
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDR-------VKMDPQLE------K--------E----T-GAKFE   83 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~-~~d~-------~~~~~~~~------~--------~----~-g~~~~   83 (240)
                      +.++.|++|.|-|+|++|...|+.|...|.+|+ +.|.       .....+..      +        .    . +.+.+
T Consensus       247 G~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~G~i~dp~Gid~edl~~l~~~k~~~~g~v~~~~~~~~~a~~v  326 (470)
T 2bma_A          247 NIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYF  326 (470)
T ss_dssp             TCCGGGCEEEEECSSHHHHHHHHHHHHTTCEECEEEETTEEEECSSCCCHHHHHHHHHHHTTTTCCGGGGGGTCSSCEEC
T ss_pred             cCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEEeCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHHhhcCCcEEe
Confidence            346899999999999999999999999999987 4443       22221111      0        0    0 23333


Q ss_pred             CCHHhh-cCcCCEEEEcCCCChhhhhcccHHHHccC-CCCC-EEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360           84 EDLDTM-LPKCDIVVVNTPLTEKTRGMFDKDRIAKM-KKGV-LIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus        84 ~~l~el-l~~aDiVvl~lp~~~~t~~~i~~~~l~~m-k~ga-ilIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      + .+++ -..||+++-|..     .+.|+.+....+ ++++ +|+-.+.++ ...+| .+.|.+..|.
T Consensus       327 ~-~~~~~~~~~DI~iPcA~-----~~~I~~~na~~l~~~~ak~V~EgAN~p-~T~eA-~~~L~~rGIl  386 (470)
T 2bma_A          327 P-NEKPWGVPCTLAFPCAT-----QNDVDLDQAKLLQKNGCILVGEGANMP-STVDA-INLFKSNNII  386 (470)
T ss_dssp             S-SCCTTSSCCSEEEECSS-----TTCBCSHHHHHHHHTTCCEEECCSSSC-BCHHH-HHHHHHTTCE
T ss_pred             c-CcCeeecCccEEEeccc-----cCcCCHHHHHHHHhcCcEEEEeCCCCC-CCHHH-HHHHHHCCcE
Confidence            2 1233 246899888873     456666655555 2234 444555454 56666 6777777766

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=97.24  E-value=0.0002  Score=62.62  Aligned_cols=89  Identities=20%  Similarity=0.225  Sum_probs=66.0

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-----CCHHhhc----CcCCEEEEcCCCChh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML----PKCDIVVVNTPLTEK  105 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell----~~aDiVvl~lp~~~~  105 (240)
                      .|.+|.|+|.|.+|...++.++..|++|++.++++.+.+.++++|+..+     .++.+.+    ...|+++.++...+.
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g~~~~  245 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSPKA  245 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSCCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCCCHHH
Confidence            5899999999999999999999999999999987766677777876422     1232222    257888887752221


Q ss_pred             hhhcccHHHHccCCCCCEEEEcC
Q 026360          106 TRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailIN~s  128 (240)
                           ....++.++++..++.++
T Consensus       246 -----~~~~~~~l~~~G~iv~~G  263 (340)
T 3s2e_A          246 -----FSQAIGMVRRGGTIALNG  263 (340)
T ss_dssp             -----HHHHHHHEEEEEEEEECS
T ss_pred             -----HHHHHHHhccCCEEEEeC
Confidence                 235567788888888886

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=97.24  E-value=0.00054  Score=61.95  Aligned_cols=68  Identities=21%  Similarity=0.264  Sum_probs=50.4

Q ss_pred             CCeEEEEccCh---HHHHHHHHhccCC-CEEE--EEcCCCCChh-HHHhcCc---eecCCHHhhcCc-------CCEEEE
Q 026360           36 GKTVGTVGCGR---IGKLLLQRLKPFN-CNLL--YHDRVKMDPQ-LEKETGA---KFEEDLDTMLPK-------CDIVVV   98 (240)
Q Consensus        36 g~~vgIIG~G~---iG~~~A~~l~~~G-~~V~--~~d~~~~~~~-~~~~~g~---~~~~~l~ell~~-------aDiVvl   98 (240)
                      -.+|||||+|.   ||+..+..++..+ ++++  ++|+++...+ .++..|+   ..+.++++++++       .|+|++
T Consensus        37 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~I  116 (417)
T 3v5n_A           37 RIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAVAI  116 (417)
T ss_dssp             CEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEEEE
T ss_pred             cceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEEEE
Confidence            45899999999   9999988877665 6765  4687653332 3445677   466799999976       899999


Q ss_pred             cCCCC
Q 026360           99 NTPLT  103 (240)
Q Consensus        99 ~lp~~  103 (240)
                      ++|..
T Consensus       117 ~tp~~  121 (417)
T 3v5n_A          117 VTPNH  121 (417)
T ss_dssp             CSCTT
T ss_pred             CCCcH
Confidence            99954

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=97.21  E-value=0.00051  Score=61.30  Aligned_cols=66  Identities=23%  Similarity=0.400  Sum_probs=47.8

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCce---ecCC---HHhhcCcCCEEEEc
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK---FEED---LDTMLPKCDIVVVN   99 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~---~~~~---l~ell~~aDiVvl~   99 (240)
                      -+.|++|+|+|.|.+|+.+++.++.+|++|+++|+++..... ......   ...+   +.++++++|+|+..
T Consensus        11 ~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~-~~ad~~~~~~~~d~~~l~~~~~~~dvI~~~   82 (389)
T 3q2o_A           11 ILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNSPCA-QVADIEIVASYDDLKAIQHLAEISDVVTYE   82 (389)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTCTTT-TTCSEEEECCTTCHHHHHHHHHTCSEEEES
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchH-HhCCceEecCcCCHHHHHHHHHhCCEeeec
Confidence            478999999999999999999999999999999976532211 101111   1122   56778889998654

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=97.21  E-value=0.00024  Score=62.65  Aligned_cols=94  Identities=14%  Similarity=0.130  Sum_probs=61.1

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCChhH-----HHh--c----CceecCCHHhhcCcCCEEEEcCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQL-----EKE--T----GAKFEEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~~-----~~~--~----g~~~~~~l~ell~~aDiVvl~lp  101 (240)
                      ..++|+|||.|.||..+|..+...|+  +|..+|.+....+.     ...  .    .+....+.++ +++||+|+++..
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG   98 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAG   98 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCC
Confidence            57899999999999999999987777  89999986422211     111  0    1122346665 899999999864


Q ss_pred             CCh-----------hhhhccc--HHHHccCCCCCEEEEcCC
Q 026360          102 LTE-----------KTRGMFD--KDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       102 ~~~-----------~t~~~i~--~~~l~~mk~gailIN~sr  129 (240)
                      ...           .+..++.  .+.+....|++++++++.
T Consensus        99 ~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtN  139 (330)
T 3ldh_A           99 ARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPE  139 (330)
T ss_dssp             CCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCC
Confidence            321           1111111  123334478999999984

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=97.21  E-value=0.00024  Score=63.14  Aligned_cols=90  Identities=24%  Similarity=0.286  Sum_probs=66.4

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceec-----CCHHhhcC--------cCCEEEEcC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDTMLP--------KCDIVVVNT  100 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell~--------~aDiVvl~l  100 (240)
                      .|.+|.|+|.|.+|...++.++..|+ +|++.++++...+.++++|+..+     .++.+.+.        ..|+|+-++
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~  261 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECA  261 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEECC
Confidence            58999999999999999999999999 89999887666667777786432     23333332        378888887


Q ss_pred             CCChhhhhcccHHHHccCCCCCEEEEcCC
Q 026360          101 PLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       101 p~~~~t~~~i~~~~l~~mk~gailIN~sr  129 (240)
                      ...+     .-...++.++++..++.++-
T Consensus       262 G~~~-----~~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          262 GVAE-----TVKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             CCHH-----HHHHHHHHEEEEEEEEECSC
T ss_pred             CCHH-----HHHHHHHHhccCCEEEEEec
Confidence            6221     12356677888888888873

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=97.20  E-value=0.0011  Score=57.98  Aligned_cols=112  Identities=14%  Similarity=0.072  Sum_probs=73.3

Q ss_pred             CCeEEEEccChHHHH-HHHHhccCCCEEEEEcCCCCCh--hHHHhcCceec--CCHHhhc-CcCCEEEEcC--C-CChhh
Q 026360           36 GKTVGTVGCGRIGKL-LLQRLKPFNCNLLYHDRVKMDP--QLEKETGAKFE--EDLDTML-PKCDIVVVNT--P-LTEKT  106 (240)
Q Consensus        36 g~~vgIIG~G~iG~~-~A~~l~~~G~~V~~~d~~~~~~--~~~~~~g~~~~--~~l~ell-~~aDiVvl~l--p-~~~~t  106 (240)
                      .++|.|||.|.+|.+ +|+.|+..|++|.++|....+.  +..++.|+...  .+.+++. .++|+|+..-  | ..|..
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~~~~p~~   83 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVAKRGMDVV   83 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTCCTTCHHH
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCcCCCCHHH
Confidence            578999999999996 9999999999999999864322  23455676543  3455555 5799998863  3 23322


Q ss_pred             -----h--hcccH-HHHcc--CCCC-CEEEEcCCCcccCHHHHHHHHHhCCc
Q 026360          107 -----R--GMFDK-DRIAK--MKKG-VLIVNNARGAIMDTQAVVDACSSGHI  147 (240)
Q Consensus       107 -----~--~~i~~-~~l~~--mk~g-ailIN~srg~~vd~~aL~~aL~~g~i  147 (240)
                           +  .++.+ +.+..  ++.. .+-|--+.|+.=...-+...|+....
T Consensus        84 ~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~  135 (326)
T 3eag_A           84 EAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAGL  135 (326)
T ss_dssp             HHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence                 1  13332 34443  3332 35555566887777778888887543

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=97.18  E-value=0.0004  Score=60.73  Aligned_cols=87  Identities=16%  Similarity=0.200  Sum_probs=60.8

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec----CC---HHhh-cCcCCEEEEcCCCChhhh
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----ED---LDTM-LPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~---l~el-l~~aDiVvl~lp~~~~t~  107 (240)
                      .+++.|+|+|.+|+.+++.|...|. |++.|+++...+ ..+.++...    .+   ++++ ++++|.++++++.++  .
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~--~  190 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDS--E  190 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSHH--H
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCccH--H
Confidence            5689999999999999999999999 999998765555 555555422    12   3334 678999999998543  3


Q ss_pred             hcccHHHHccCCCCCEEEE
Q 026360          108 GMFDKDRIAKMKKGVLIVN  126 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN  126 (240)
                      ++.-....+.+.+...++-
T Consensus       191 n~~~~~~ar~~~~~~~iia  209 (336)
T 1lnq_A          191 TIHCILGIRKIDESVRIIA  209 (336)
T ss_dssp             HHHHHHHHHTTCTTSEEEE
T ss_pred             HHHHHHHHHHHCCCCeEEE
Confidence            3344455666777644443

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=97.18  E-value=0.00057  Score=59.99  Aligned_cols=90  Identities=17%  Similarity=0.113  Sum_probs=65.6

Q ss_pred             CCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec------CCHHhhcC-----cCCEEEEcCCC
Q 026360           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE------EDLDTMLP-----KCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~------~~l~ell~-----~aDiVvl~lp~  102 (240)
                      .|+++.|+|. |.+|..+++.++..|++|++.++++...+.+++.|....      .++.+.+.     ..|+|+.++..
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~  248 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVS  248 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCCc
Confidence            5899999999 899999999999999999999987655566666665321      23333332     47888888763


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEEcCC
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN~sr  129 (240)
                      .+     .....++.|+++..+|+++.
T Consensus       249 ~~-----~~~~~~~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          249 EA-----AIEASTRYVRANGTTVLVGM  270 (347)
T ss_dssp             HH-----HHHHHTTSEEEEEEEEECCC
T ss_pred             HH-----HHHHHHHHHhcCCEEEEEeC
Confidence            22     12456677888888988874

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=97.17  E-value=0.00025  Score=63.39  Aligned_cols=67  Identities=19%  Similarity=0.272  Sum_probs=51.6

Q ss_pred             CeEEEEccC-hHHHHHHHHhccC-CCEEE-EEcCCCCChh-HHHhcCceecCCHHhhcCc--CCEEEEcCCCC
Q 026360           37 KTVGTVGCG-RIGKLLLQRLKPF-NCNLL-YHDRVKMDPQ-LEKETGAKFEEDLDTMLPK--CDIVVVNTPLT  103 (240)
Q Consensus        37 ~~vgIIG~G-~iG~~~A~~l~~~-G~~V~-~~d~~~~~~~-~~~~~g~~~~~~l~ell~~--aDiVvl~lp~~  103 (240)
                      .+|||||+| .+|...+..+... ++++. ++|+++...+ .+...|+..+.++++++++  .|+|++++|..
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~   75 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQ   75 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGG
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcH
Confidence            489999999 9999999988765 66755 6677643332 3445688777899999975  99999999943

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=97.17  E-value=0.00023  Score=64.87  Aligned_cols=67  Identities=13%  Similarity=0.098  Sum_probs=50.9

Q ss_pred             CCeEEEEcc----ChHHHHHHHHhccC--CCEE-EEEcCCCCChh-HHHhcCce---ecCCHHhhcC--cCCEEEEcCCC
Q 026360           36 GKTVGTVGC----GRIGKLLLQRLKPF--NCNL-LYHDRVKMDPQ-LEKETGAK---FEEDLDTMLP--KCDIVVVNTPL  102 (240)
Q Consensus        36 g~~vgIIG~----G~iG~~~A~~l~~~--G~~V-~~~d~~~~~~~-~~~~~g~~---~~~~l~ell~--~aDiVvl~lp~  102 (240)
                      -.+|||||+    |.||+..+..++..  +++| .++|+++...+ .++..|+.   .+.+++++++  +.|+|++++|.
T Consensus        20 ~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp~   99 (438)
T 3btv_A           20 PIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQV   99 (438)
T ss_dssp             CEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSCH
T ss_pred             CCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCCc
Confidence            358999999    99999999999876  7776 46787653332 33445653   5679999986  68999999994

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=97.17  E-value=0.00038  Score=57.56  Aligned_cols=66  Identities=18%  Similarity=0.237  Sum_probs=46.6

Q ss_pred             CCeEEEEccChHHHHHHHH--hccCCCEEE-EEcCCCCChhH-HHhcCceecCCHHhhcC-cCCEEEEcCCC
Q 026360           36 GKTVGTVGCGRIGKLLLQR--LKPFNCNLL-YHDRVKMDPQL-EKETGAKFEEDLDTMLP-KCDIVVVNTPL  102 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~--l~~~G~~V~-~~d~~~~~~~~-~~~~g~~~~~~l~ell~-~aDiVvl~lp~  102 (240)
                      .++++|||+|.+|+.+++.  ... |++++ ++|.++..... .....+...++++++++ +.|+|++++|.
T Consensus        80 ~~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ell~~~ID~ViIA~Ps  150 (211)
T 2dt5_A           80 KWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPR  150 (211)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcCCeeecHHhHHHHHHcCCCEEEEeCCc
Confidence            4689999999999999996  334 88855 56766543322 22223334568888886 48999999993

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=97.16  E-value=0.00049  Score=62.96  Aligned_cols=115  Identities=16%  Similarity=0.213  Sum_probs=74.6

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCC--C--hhHHHhcCceec--CCHHhhcCc-CCEEEEcC--CC-
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM--D--PQLEKETGAKFE--EDLDTMLPK-CDIVVVNT--PL-  102 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~--~--~~~~~~~g~~~~--~~l~ell~~-aDiVvl~l--p~-  102 (240)
                      ++.|++|.|||+|..|.++|+.|+..|++|.++|....  +  .+..++.|+...  ...++++.+ +|.|++..  |. 
T Consensus         6 ~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~~~   85 (451)
T 3lk7_A            6 TFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPYN   85 (451)
T ss_dssp             TTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTSCTT
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcCCCC
Confidence            57899999999999999999999999999999998542  1  123345576532  233456666 89988863  32 


Q ss_pred             Chhh-----h--hcccH-HHHccC-CCCCEEEEcCCCcccCHHHHHHHHHhCCc
Q 026360          103 TEKT-----R--GMFDK-DRIAKM-KKGVLIVNNARGAIMDTQAVVDACSSGHI  147 (240)
Q Consensus       103 ~~~t-----~--~~i~~-~~l~~m-k~gailIN~srg~~vd~~aL~~aL~~g~i  147 (240)
                      .|..     .  .++.+ +.+..+ +...+-|.-+.|+.=...-+...|+....
T Consensus        86 ~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~  139 (451)
T 3lk7_A           86 NPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQ  139 (451)
T ss_dssp             SHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTTC
T ss_pred             ChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence            2221     1  13333 344333 33334444556877777777788876544

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.16  E-value=0.00085  Score=54.58  Aligned_cols=91  Identities=11%  Similarity=0.123  Sum_probs=59.3

Q ss_pred             CeEEEEc-cChHHHHHHHHhc-cCCCEEEEEcCCCC-ChhHH--HhcCce-------ecCCHHhhcCcCCEEEEcCCCCh
Q 026360           37 KTVGTVG-CGRIGKLLLQRLK-PFNCNLLYHDRVKM-DPQLE--KETGAK-------FEEDLDTMLPKCDIVVVNTPLTE  104 (240)
Q Consensus        37 ~~vgIIG-~G~iG~~~A~~l~-~~G~~V~~~d~~~~-~~~~~--~~~g~~-------~~~~l~ell~~aDiVvl~lp~~~  104 (240)
                      |++.|.| .|.||+.+++.|. ..|++|++.+|++. ..+..  ...++.       ..++++++++.+|+|+.+.....
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~n   85 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMESG   85 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCCH
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCCC
Confidence            5699999 5999999999999 89999999998653 22222  111221       11345577889999999886431


Q ss_pred             hhhhcccHHHHccCCC--CCEEEEcCCCc
Q 026360          105 KTRGMFDKDRIAKMKK--GVLIVNNARGA  131 (240)
Q Consensus       105 ~t~~~i~~~~l~~mk~--gailIN~srg~  131 (240)
                      - .   ....+..|+.  ...||++|...
T Consensus        86 ~-~---~~~~~~~~~~~~~~~iv~iSs~~  110 (221)
T 3r6d_A           86 S-D---MASIVKALSRXNIRRVIGVSMAG  110 (221)
T ss_dssp             H-H---HHHHHHHHHHTTCCEEEEEEETT
T ss_pred             h-h---HHHHHHHHHhcCCCeEEEEeece
Confidence            1 1   3344444432  23688877644

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=97.16  E-value=0.00021  Score=57.45  Aligned_cols=89  Identities=12%  Similarity=0.176  Sum_probs=59.7

Q ss_pred             CCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-----CCH-Hhh---c--CcCCEEEEcCCC
Q 026360           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDL-DTM---L--PKCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l-~el---l--~~aDiVvl~lp~  102 (240)
                      .|++|.|+| .|.+|..+++.++..|++|++.++++...+.+++.|....     .+. +++   .  ...|+++.+.. 
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g-  116 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLA-  116 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCC-
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEeeCCcHHHHHHHHHHhCCCCCeEEEECCc-
Confidence            589999999 6999999999999999999999986543444445554211     111 111   1  13677777664 


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEEcCC
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN~sr  129 (240)
                       ..    .....++.|+++..+|+++.
T Consensus       117 -~~----~~~~~~~~l~~~G~~v~~g~  138 (198)
T 1pqw_A          117 -GE----AIQRGVQILAPGGRFIELGK  138 (198)
T ss_dssp             -TH----HHHHHHHTEEEEEEEEECSC
T ss_pred             -hH----HHHHHHHHhccCCEEEEEcC
Confidence             11    12456677788888888764

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=97.13  E-value=0.0021  Score=58.89  Aligned_cols=94  Identities=19%  Similarity=0.295  Sum_probs=66.6

Q ss_pred             cccCCCeEEEEccC----------hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcC--ceecCCHHhhcCcCCEEEEc
Q 026360           32 YDLEGKTVGTVGCG----------RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG--AKFEEDLDTMLPKCDIVVVN   99 (240)
Q Consensus        32 ~~l~g~~vgIIG~G----------~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g--~~~~~~l~ell~~aDiVvl~   99 (240)
                      ..+.|++|+|+|+-          .-...+++.|...|++|.+|||.-. .+....++  +..+.++++.++.+|.|+++
T Consensus       314 ~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~-~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~  392 (450)
T 3gg2_A          314 GNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAM-KEAQKRLGDKVEYTTDMYDAVRGAEALFHV  392 (450)
T ss_dssp             TCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSCH-HHHHHHHGGGSEECSSHHHHTTTCSCEEEC
T ss_pred             ccCCCCEEEEEeeeeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCc-HHHHHhcCccceecCCHHHHhcCCCEEEEc
Confidence            46899999999963          3467899999999999999998542 22222233  56677899999999999999


Q ss_pred             CCCChhhhhcccHH-HHccCCCCCEEEEcCCC
Q 026360          100 TPLTEKTRGMFDKD-RIAKMKKGVLIVNNARG  130 (240)
Q Consensus       100 lp~~~~t~~~i~~~-~l~~mk~gailIN~srg  130 (240)
                      +.-. +.+. ++-+ ..+.|+ +.+++|+ |+
T Consensus       393 t~~~-~f~~-~~~~~~~~~~~-~~~i~D~-r~  420 (450)
T 3gg2_A          393 TEWK-EFRM-PDWSALSQAMA-ASLVIDG-RN  420 (450)
T ss_dssp             SCCG-GGSS-CCHHHHHHHSS-SCEEEES-SC
T ss_pred             cCCH-HHhh-cCHHHHHHhcC-CCEEEEC-CC
Confidence            8743 3333 3433 344465 5678885 54

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=97.13  E-value=0.00039  Score=62.22  Aligned_cols=67  Identities=16%  Similarity=0.170  Sum_probs=52.1

Q ss_pred             CCeEEEEccChHHHHHHHHhccC--CCEEE-EEcCCCCC-hhHHHhcCceecCCHHhhcCcCCEEEEcCCCC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPF--NCNLL-YHDRVKMD-PQLEKETGAKFEEDLDTMLPKCDIVVVNTPLT  103 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~--G~~V~-~~d~~~~~-~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~  103 (240)
                      -.+|||||.| +|+..+..++..  ++++. ++|+++.. ...+++.|+..++++++++++.|++++++|..
T Consensus         7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~~   77 (372)
T 4gmf_A            7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRST   77 (372)
T ss_dssp             CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC--
T ss_pred             CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCCc
Confidence            4589999999 799888888765  67865 56776543 33456678887889999999999999999843

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=97.12  E-value=0.0005  Score=60.18  Aligned_cols=94  Identities=18%  Similarity=0.194  Sum_probs=60.3

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCC--CChh-----HHHh-----cC--ceecCCHHhhcCcCCEEEEc
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK--MDPQ-----LEKE-----TG--AKFEEDLDTMLPKCDIVVVN   99 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~--~~~~-----~~~~-----~g--~~~~~~l~ell~~aDiVvl~   99 (240)
                      ..++|+|||.|.||..+|..+...|+ +|..+|+++  ...+     ....     ..  +....+ .+.+++||+|+++
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDvVIia   85 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSD-YADTADSDVVVIT   85 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESC-GGGGTTCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCC-HHHhCCCCEEEEe
Confidence            56899999999999999999998898 999999863  1111     0000     11  222223 4678999999999


Q ss_pred             CCCC--h-hhh--------hccc--HHHHccCCCCCEEEEcCC
Q 026360          100 TPLT--E-KTR--------GMFD--KDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       100 lp~~--~-~t~--------~~i~--~~~l~~mk~gailIN~sr  129 (240)
                      .+..  | .++        .++.  .+.+....|++++++++.
T Consensus        86 ag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsN  128 (315)
T 3tl2_A           86 AGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTN  128 (315)
T ss_dssp             CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence            7422  1 011        1111  122333468999999984

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=97.12  E-value=0.00053  Score=60.19  Aligned_cols=88  Identities=19%  Similarity=0.186  Sum_probs=65.4

Q ss_pred             CCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec----CCHHhh----c--CcCCEEEEcCCCC
Q 026360           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLDTM----L--PKCDIVVVNTPLT  103 (240)
Q Consensus        35 ~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~el----l--~~aDiVvl~lp~~  103 (240)
                      .|++|.|+|. |.+|..+++.++..|++|++.++++...+.++++|...+    .++.+.    .  ...|+++-++...
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~g~~  238 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPIGGP  238 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESCC--
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHHHHhCCCCceEEEECCchh
Confidence            5899999998 999999999999999999999987766777777776422    222222    2  1488888887631


Q ss_pred             hhhhhcccHHHHccCCCCCEEEEcC
Q 026360          104 EKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       104 ~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                            .....+..++++..++.++
T Consensus       239 ------~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          239 ------AFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             ------CHHHHHHTEEEEEEEEEC-
T ss_pred             ------HHHHHHHhhcCCCEEEEEE
Confidence                  2346777888999898886

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=97.11  E-value=0.0006  Score=59.60  Aligned_cols=65  Identities=15%  Similarity=0.180  Sum_probs=47.7

Q ss_pred             CeEEEEccChHHHHHHHHhcc--CCCEE-EEEcCCCCC--hhHHHhcCce-ecCCHHhhcC-----cCCEEEEcCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKP--FNCNL-LYHDRVKMD--PQLEKETGAK-FEEDLDTMLP-----KCDIVVVNTP  101 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~--~G~~V-~~~d~~~~~--~~~~~~~g~~-~~~~l~ell~-----~aDiVvl~lp  101 (240)
                      .+|||||+|.+|+.+++.+..  -+.++ .++|+++..  ...++..|+. ...+.+++++     +.|+|+.++|
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp   80 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATS   80 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSC
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCC
Confidence            589999999999999999843  46664 466777655  3445566764 2446777754     5799999999

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=97.11  E-value=0.0024  Score=57.97  Aligned_cols=109  Identities=15%  Similarity=0.263  Sum_probs=72.7

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCCEEE-EEcCC-------CCChhHHHh----cC------ceecCCHHhhc-C
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRV-------KMDPQLEKE----TG------AKFEEDLDTML-P   91 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~-~~d~~-------~~~~~~~~~----~g------~~~~~~l~ell-~   91 (240)
                      +.+++|++|.|.|+|++|+.+|+.|...|.+|+ +.|.+       ..+.+...+    .|      .+.+ +.++++ .
T Consensus       216 g~~l~g~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~~~-~~~~i~~~  294 (424)
T 3k92_A          216 GIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVI-TNEELLEK  294 (424)
T ss_dssp             TCCGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSCCB-CHHHHHHS
T ss_pred             CCCcccCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcEEe-cCccceec
Confidence            457899999999999999999999999999975 44543       112222221    12      2223 345544 5


Q ss_pred             cCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus        92 ~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      +||+++-|..     .+.|+.+....++ -.+|+-.+.+++ ..+ ..+.|.+..|.
T Consensus       295 ~~DIliPcA~-----~n~I~~~~a~~l~-ak~V~EgAN~p~-t~e-A~~iL~~rGI~  343 (424)
T 3k92_A          295 DCDILVPAAI-----SNQITAKNAHNIQ-ASIVVERANGPT-TID-ATKILNERGVL  343 (424)
T ss_dssp             CCSEEEECSC-----SSCBCTTTGGGCC-CSEEECCSSSCB-CHH-HHHHHHHTTCE
T ss_pred             cccEEeecCc-----ccccChhhHhhcC-ceEEEcCCCCCC-CHH-HHHHHHHCCCE
Confidence            6999998875     4677777777774 356666666764 544 45677777665

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=97.11  E-value=0.00024  Score=62.35  Aligned_cols=89  Identities=17%  Similarity=0.163  Sum_probs=64.9

Q ss_pred             CCCeEEEEccChHHHHHHHHhccC--CCEEEEEcCCCCChhHHHhcCceecCCHH-------hhcC--cCCEEEEcCCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPF--NCNLLYHDRVKMDPQLEKETGAKFEEDLD-------TMLP--KCDIVVVNTPLT  103 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~--G~~V~~~d~~~~~~~~~~~~g~~~~~~l~-------ell~--~aDiVvl~lp~~  103 (240)
                      .|.+|.|+|.|.+|...++.++..  |++|++.++++...+.++++|+..+-+..       ++..  ..|+|+-++...
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid~~g~~  249 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAIDLVGTE  249 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEEEESSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEEEECCCCh
Confidence            689999999999999999999998  99999999876566667777764322221       1221  578888888632


Q ss_pred             hhhhhcccHHHHccCCCCCEEEEcC
Q 026360          104 EKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       104 ~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      +.     ....++.++++..++.++
T Consensus       250 ~~-----~~~~~~~l~~~G~iv~~g  269 (344)
T 2h6e_A          250 ET-----TYNLGKLLAQEGAIILVG  269 (344)
T ss_dssp             HH-----HHHHHHHEEEEEEEEECC
T ss_pred             HH-----HHHHHHHhhcCCEEEEeC
Confidence            11     234566788888888876

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=97.10  E-value=0.00054  Score=59.94  Aligned_cols=89  Identities=15%  Similarity=0.137  Sum_probs=66.0

Q ss_pred             CCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-----CCHHhhc------CcCCEEEEcCCC
Q 026360           35 EGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML------PKCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell------~~aDiVvl~lp~  102 (240)
                      .|++|.|+|.| .+|..+++.++..|++|++.++++...+.++++|...+     .++.+.+      ...|+++.++..
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~  223 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIGG  223 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCcEEEECCCC
Confidence            58999999997 99999999999999999999988777777777776422     1222221      257888888762


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEEcCC
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN~sr  129 (240)
                       +.+     .+.+..++++..++.++-
T Consensus       224 -~~~-----~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          224 -PDG-----NELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             -HHH-----HHHHHTEEEEEEEEECCC
T ss_pred             -hhH-----HHHHHHhcCCCEEEEEee
Confidence             111     234567889999998873

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=97.09  E-value=0.00043  Score=60.78  Aligned_cols=68  Identities=24%  Similarity=0.399  Sum_probs=51.1

Q ss_pred             CCeEEEEccC-hHHHHHHHHhccC--CCEE-EEEcCCCCChh-HHHhcCc-eecCCHHhhcC--cCCEEEEcCCCC
Q 026360           36 GKTVGTVGCG-RIGKLLLQRLKPF--NCNL-LYHDRVKMDPQ-LEKETGA-KFEEDLDTMLP--KCDIVVVNTPLT  103 (240)
Q Consensus        36 g~~vgIIG~G-~iG~~~A~~l~~~--G~~V-~~~d~~~~~~~-~~~~~g~-~~~~~l~ell~--~aDiVvl~lp~~  103 (240)
                      -.+|||||+| .+|+..+..++..  ++++ .++|+++...+ .++..|. ..+++++++++  +.|+|++++|..
T Consensus        18 ~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~   93 (340)
T 1zh8_A           18 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVE   93 (340)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGG
T ss_pred             ceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCch
Confidence            3589999999 8999999998876  5675 56787653333 2344565 56789999986  589999999943

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=97.09  E-value=0.0017  Score=56.64  Aligned_cols=98  Identities=24%  Similarity=0.294  Sum_probs=62.1

Q ss_pred             CeEEEEcc-ChHHHHHHHHhccCC--CEEEEEcCCCCChhHHHhc--C-----cee---cCCHHhhcCcCCEEEEcCCCC
Q 026360           37 KTVGTVGC-GRIGKLLLQRLKPFN--CNLLYHDRVKMDPQLEKET--G-----AKF---EEDLDTMLPKCDIVVVNTPLT  103 (240)
Q Consensus        37 ~~vgIIG~-G~iG~~~A~~l~~~G--~~V~~~d~~~~~~~~~~~~--g-----~~~---~~~l~ell~~aDiVvl~lp~~  103 (240)
                      ++|+|+|. |.+|..++..|...|  .+|..+|+.+ ....+.++  .     +..   .+++++.+++||+|+++.+..
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~-~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~   79 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH-TPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVP   79 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS-HHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc-cHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcC
Confidence            48999998 999999999998777  6899999865 22222221  1     122   136788899999999987432


Q ss_pred             hh---hhh-c------ccH---HHHccCCCCCEEEEcCCCcccCHHH
Q 026360          104 EK---TRG-M------FDK---DRIAKMKKGVLIVNNARGAIMDTQA  137 (240)
Q Consensus       104 ~~---t~~-~------i~~---~~l~~mk~gailIN~srg~~vd~~a  137 (240)
                      ..   ++. +      +-.   +.+....|++++|+++  .++|.-.
T Consensus        80 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~s--NPv~~~~  124 (314)
T 1mld_A           80 RKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS--NPVNSTI  124 (314)
T ss_dssp             CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS--SCHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC--CCcchhH
Confidence            11   100 0      111   1223335889999974  3455443

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=97.08  E-value=0.00041  Score=60.45  Aligned_cols=89  Identities=19%  Similarity=0.137  Sum_probs=62.6

Q ss_pred             CCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec------CCHHhhcC-----cCCEEEEcCCC
Q 026360           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE------EDLDTMLP-----KCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~------~~l~ell~-----~aDiVvl~lp~  102 (240)
                      .|+++.|.|. |.||..+++.++..|++|++.+++....+.++++|....      .++.+.+.     ..|+++.++..
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~  224 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGG  224 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEECCCh
Confidence            5899999998 999999999999999999999986544445555564211      23332221     46888877752


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEEcCC
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN~sr  129 (240)
                        .   . ....++.++++..++.++-
T Consensus       225 --~---~-~~~~~~~l~~~G~~v~~g~  245 (333)
T 1v3u_A          225 --E---F-LNTVLSQMKDFGKIAICGA  245 (333)
T ss_dssp             --H---H-HHHHHTTEEEEEEEEECCC
T ss_pred             --H---H-HHHHHHHHhcCCEEEEEec
Confidence              1   1 2456777888888888863

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=97.08  E-value=0.0047  Score=57.06  Aligned_cols=107  Identities=21%  Similarity=0.336  Sum_probs=70.4

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEE--------cCCCCChhHHH----hcC-------ceecCCHHhhcCcC
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH--------DRVKMDPQLEK----ETG-------AKFEEDLDTMLPKC   93 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~--------d~~~~~~~~~~----~~g-------~~~~~~l~ell~~a   93 (240)
                      +|.|++|.|-|+|++|...|+.|...|++|+++        |+...+.+...    ..|       .+...+ +-+-..|
T Consensus       241 ~l~g~tVaVQG~GNVG~~aa~~L~e~GakVVavsDs~G~iyd~~Gid~~~l~~~k~~~g~i~~~~~a~~~~~-~il~~~~  319 (501)
T 3mw9_A          241 GFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEG-SILEVDC  319 (501)
T ss_dssp             SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHHSSSTTCTTSEEECS-CGGGSCC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCeecccCceeecc-ccccccc
Confidence            589999999999999999999999999998764        33333322221    111       222221 1133579


Q ss_pred             CEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360           94 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus        94 DiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      |+++-|.-     .+.|+.+....++ -.+|+-.+.+. .+.++ .+.|.+..|.
T Consensus       320 DIliPcA~-----~n~I~~~na~~l~-akiV~EgAN~p-~T~eA-~~iL~~rGIl  366 (501)
T 3mw9_A          320 DILIPAAS-----EKQLTKSNAPRVK-AKIIAEGANGP-TTPEA-DKIFLERNIM  366 (501)
T ss_dssp             SEEEECSS-----SCCBCTTTGGGCC-CSEEECCSSSC-BCHHH-HHHHHHTTCE
T ss_pred             eEEeeccc-----cCccCHhHHHHcC-ceEEEeCCCCc-CCHHH-HHHHHHCCCE
Confidence            99988874     5777777777776 35666666675 45554 4566666555

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=97.07  E-value=0.00098  Score=60.59  Aligned_cols=109  Identities=13%  Similarity=0.207  Sum_probs=64.8

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCCEEEE-EcCCC------------CChhHH----HhcC-------ceecCCH
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLY-HDRVK------------MDPQLE----KETG-------AKFEEDL   86 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~-~d~~~------------~~~~~~----~~~g-------~~~~~~l   86 (240)
                      +.++.|++|.|.|+|++|+.+|+.|...|++|++ .|.++            .+.+..    ...|       .+.. +.
T Consensus       207 g~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i-~~  285 (421)
T 2yfq_A          207 GIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERI-TD  285 (421)
T ss_dssp             TCCGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC-------------
T ss_pred             CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEe-Cc
Confidence            3468899999999999999999999999999884 45541            111111    1111       1222 22


Q ss_pred             Hhhc-CcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360           87 DTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus        87 ~ell-~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      ++++ ..||+++-|..     .+.++.+....++ ..+++-.+.+++ ..+ -.+.|.+..+.
T Consensus       286 ~~~~~~~~DIliP~A~-----~n~i~~~~A~~l~-ak~VvEgAN~P~-t~e-a~~il~~~GI~  340 (421)
T 2yfq_A          286 EEFWTKEYDIIVPAAL-----ENVITGERAKTIN-AKLVCEAANGPT-TPE-GDKVLTERGIN  340 (421)
T ss_dssp             ---------CEEECSC-----SSCSCHHHHTTCC-CSEEECCSSSCS-CHH-HHHHHHHHTCE
T ss_pred             cchhcCCccEEEEcCC-----cCcCCcccHHHcC-CeEEEeCCcccc-CHH-HHHHHHHCCCE
Confidence            3333 36999998875     4667777777773 566777776765 444 34556565555

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.07  E-value=0.0021  Score=51.96  Aligned_cols=94  Identities=14%  Similarity=0.091  Sum_probs=59.4

Q ss_pred             CeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-CCHH----hhcCcCCEEEEcCCCC-----hh
Q 026360           37 KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-EDLD----TMLPKCDIVVVNTPLT-----EK  105 (240)
Q Consensus        37 ~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~~l~----ell~~aDiVvl~lp~~-----~~  105 (240)
                      ++|.|.|. |.||+.+++.|.+.|++|++.+|++.........++..+ .|+.    +.+..+|+|+.+....     ..
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~   80 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSVPWGSGRGY   80 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCCCTTSSCTH
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCccCCCcchhh
Confidence            47899996 999999999999999999999986532222211233211 1221    6688999999887542     11


Q ss_pred             hhhcccHHHHccCCC-CCEEEEcCCC
Q 026360          106 TRGMFDKDRIAKMKK-GVLIVNNARG  130 (240)
Q Consensus       106 t~~~i~~~~l~~mk~-gailIN~srg  130 (240)
                      .........++.|+. +..+|++|..
T Consensus        81 ~n~~~~~~l~~a~~~~~~~~v~~SS~  106 (224)
T 3h2s_A           81 LHLDFATHLVSLLRNSDTLAVFILGS  106 (224)
T ss_dssp             HHHHHHHHHHHTCTTCCCEEEEECCG
T ss_pred             HHHHHHHHHHHHHHHcCCcEEEEecc
Confidence            111112345555543 4678888753

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=97.07  E-value=0.00035  Score=62.86  Aligned_cols=67  Identities=19%  Similarity=0.306  Sum_probs=49.3

Q ss_pred             CeEEEEccChHHHHHHHHhccC---------CCEEE-EEcCCCCChh-HHHhcCc-eecCCHHhhcC--cCCEEEEcCCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPF---------NCNLL-YHDRVKMDPQ-LEKETGA-KFEEDLDTMLP--KCDIVVVNTPL  102 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~---------G~~V~-~~d~~~~~~~-~~~~~g~-~~~~~l~ell~--~aDiVvl~lp~  102 (240)
                      .+|||||+|.||+..+..++..         +.+|+ ++|+++...+ .++++|+ ..+++++++++  +.|+|++++|.
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~tp~  106 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITSPN  106 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCG
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEECCCc
Confidence            4899999999999988887653         45655 5677653333 3455676 45679999995  58999999994


Q ss_pred             C
Q 026360          103 T  103 (240)
Q Consensus       103 ~  103 (240)
                      .
T Consensus       107 ~  107 (412)
T 4gqa_A          107 H  107 (412)
T ss_dssp             G
T ss_pred             H
Confidence            4

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=97.07  E-value=0.0016  Score=49.12  Aligned_cols=99  Identities=17%  Similarity=0.209  Sum_probs=70.6

Q ss_pred             CeEEEEcc----ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccH
Q 026360           37 KTVGTVGC----GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (240)
Q Consensus        37 ~~vgIIG~----G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~  112 (240)
                      ++|+|||.    |..|..+.+.|+..|++|+.+++....     -.|...+.++.++-. -|++++++|. +.+..++. 
T Consensus         5 ~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~-----i~G~~~y~sl~dlp~-vDlavi~~p~-~~v~~~v~-   76 (122)
T 3ff4_A            5 KKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGE-----VLGKTIINERPVIEG-VDTVTLYINP-QNQLSEYN-   76 (122)
T ss_dssp             CCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSE-----ETTEECBCSCCCCTT-CCEEEECSCH-HHHGGGHH-
T ss_pred             CEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCc-----CCCeeccCChHHCCC-CCEEEEEeCH-HHHHHHHH-
Confidence            68999996    679999999999999999999985321     136666678888777 9999999992 33344443 


Q ss_pred             HHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360          113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       113 ~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      +.. .+...+++++.+  -  .++++.+.+++..+.
T Consensus        77 e~~-~~g~k~v~~~~G--~--~~~e~~~~a~~~Gir  107 (122)
T 3ff4_A           77 YIL-SLKPKRVIFNPG--T--ENEELEEILSENGIE  107 (122)
T ss_dssp             HHH-HHCCSEEEECTT--C--CCHHHHHHHHHTTCE
T ss_pred             HHH-hcCCCEEEECCC--C--ChHHHHHHHHHcCCe
Confidence            333 234446666544  2  457788888887776

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=97.07  E-value=0.0011  Score=57.74  Aligned_cols=88  Identities=20%  Similarity=0.176  Sum_probs=64.4

Q ss_pred             CCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-----CCHHhhc------CcCCEEEEcCCC
Q 026360           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML------PKCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell------~~aDiVvl~lp~  102 (240)
                      .|++|.|+| .|.+|..+++.++..|++|++.++++...+.++++|...+     .++.+.+      ...|+++.++..
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~  227 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFDSVGK  227 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEEEEECCGG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCceEEEECCCh
Confidence            589999999 8999999999999999999999987655666777775421     1222211      247888888762


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEEcC
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                            -.....++.++++..+|.++
T Consensus       228 ------~~~~~~~~~l~~~G~iv~~G  247 (334)
T 3qwb_A          228 ------DTFEISLAALKRKGVFVSFG  247 (334)
T ss_dssp             ------GGHHHHHHHEEEEEEEEECC
T ss_pred             ------HHHHHHHHHhccCCEEEEEc
Confidence                  12345667788888888886

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=97.06  E-value=0.00076  Score=59.07  Aligned_cols=62  Identities=23%  Similarity=0.274  Sum_probs=48.1

Q ss_pred             CCCeEEEEccChHHH-HHHHHhccC-CCEEE-EEcCCCCChhHHHhcCceecCCHHhhcCc---CCEEEEcCCC
Q 026360           35 EGKTVGTVGCGRIGK-LLLQRLKPF-NCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLPK---CDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~-~~A~~l~~~-G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~~---aDiVvl~lp~  102 (240)
                      +-.+|||||+|.||+ ..+..++.. +++|+ ++|+++..      .|+..+.++++++++   .|+|++++|.
T Consensus        24 ~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~------~g~~~~~~~~~ll~~~~~vD~V~i~tp~   91 (330)
T 4ew6_A           24 SPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV------EGVNSYTTIEAMLDAEPSIDAVSLCMPP   91 (330)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC------TTSEEESSHHHHHHHCTTCCEEEECSCH
T ss_pred             CCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh------cCCCccCCHHHHHhCCCCCCEEEEeCCc
Confidence            346999999999998 688888765 67755 56776432      366667899999865   8999999983

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=97.06  E-value=0.0012  Score=57.53  Aligned_cols=109  Identities=16%  Similarity=0.121  Sum_probs=73.7

Q ss_pred             ccCCCeEEEE-cc-ChHHHHHHHHhccCCCEEE-EEcCCCCChhHHHhcCceecCCHHhhcC--cCCEEEEcCCCChhhh
Q 026360           33 DLEGKTVGTV-GC-GRIGKLLLQRLKPFNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTR  107 (240)
Q Consensus        33 ~l~g~~vgII-G~-G~iG~~~A~~l~~~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDiVvl~lp~~~~t~  107 (240)
                      -+..++++|| |+ |+.|+.+++.++..|++++ .+++.....+   -.|+..+.+++|+.+  ..|++++++|. +...
T Consensus        10 l~~~~siaVV~Gasg~~G~~~~~~l~~~G~~~v~~VnP~~~g~~---i~G~~vy~sl~el~~~~~vD~avI~vP~-~~~~   85 (305)
T 2fp4_A           10 YVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKT---HLGLPVFNTVKEAKEQTGATASVIYVPP-PFAA   85 (305)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCE---ETTEEEESSHHHHHHHHCCCEEEECCCH-HHHH
T ss_pred             HhCCCcEEEEECCCCCHHHHHHHHHHHCCCcEEEEeCCCcCcce---ECCeeeechHHHhhhcCCCCEEEEecCH-HHHH
Confidence            3567889999 99 9999999999999999943 5555421111   247777778999988  89999999993 2223


Q ss_pred             hcccHHHHccCCCCCEEEEcCCCcc-cCHHHHHHHHHhC-Ccc
Q 026360          108 GMFDKDRIAKMKKGVLIVNNARGAI-MDTQAVVDACSSG-HIA  148 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~srg~~-vd~~aL~~aL~~g-~i~  148 (240)
                      ..+. +..+ ... ..+|+.+.|-. -++..+.+..++. .+.
T Consensus        86 ~~~~-e~i~-~Gi-~~iv~~t~G~~~~~~~~l~~~a~~~~gi~  125 (305)
T 2fp4_A           86 AAIN-EAID-AEV-PLVVCITEGIPQQDMVRVKHRLLRQGKTR  125 (305)
T ss_dssp             HHHH-HHHH-TTC-SEEEECCCCCCHHHHHHHHHHHTTCSSCE
T ss_pred             HHHH-HHHH-CCC-CEEEEECCCCChHHHHHHHHHHHhcCCcE
Confidence            3332 3332 122 24567777643 2345788999887 665

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=97.05  E-value=0.00053  Score=59.28  Aligned_cols=87  Identities=15%  Similarity=0.152  Sum_probs=64.4

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-CCHHhhcCcCCEEEEcCCCChhhhhcccHH
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-EDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  113 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~~l~ell~~aDiVvl~lp~~~~t~~~i~~~  113 (240)
                      .|.+|.|+|.|.+|...++.++..|++|++.+ ++.+.+.++++|+..+ .+.+++-...|+++-++... ..     ..
T Consensus       142 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~d~~~v~~g~Dvv~d~~g~~-~~-----~~  214 (315)
T 3goh_A          142 KQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGVRHLYREPSQVTQKYFAIFDAVNSQ-NA-----AA  214 (315)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTEEEEESSGGGCCSCEEEEECC-------------T
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCCCEEEcCHHHhCCCccEEEECCCch-hH-----HH
Confidence            58999999999999999999999999999999 7778888888887533 22333334688888887632 11     34


Q ss_pred             HHccCCCCCEEEEcC
Q 026360          114 RIAKMKKGVLIVNNA  128 (240)
Q Consensus       114 ~l~~mk~gailIN~s  128 (240)
                      .++.++++..++.++
T Consensus       215 ~~~~l~~~G~~v~~g  229 (315)
T 3goh_A          215 LVPSLKANGHIICIQ  229 (315)
T ss_dssp             TGGGEEEEEEEEEEC
T ss_pred             HHHHhcCCCEEEEEe
Confidence            567788988888885

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.05  E-value=0.00068  Score=55.95  Aligned_cols=97  Identities=19%  Similarity=0.116  Sum_probs=61.2

Q ss_pred             cCCCeEEEEc-cChHHHHHHHHhccCC-CEEEEEcCCCCChhHHHhcCce-------ecCCHHhhcCcCCEEEEcCCCCh
Q 026360           34 LEGKTVGTVG-CGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAK-------FEEDLDTMLPKCDIVVVNTPLTE  104 (240)
Q Consensus        34 l~g~~vgIIG-~G~iG~~~A~~l~~~G-~~V~~~d~~~~~~~~~~~~g~~-------~~~~l~ell~~aDiVvl~lp~~~  104 (240)
                      ...++|.|.| .|.||+.+++.|...| ++|++++|++.........++.       ..++++++++.+|+|+.+.....
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~~  100 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGED  100 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCSTT
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCCc
Confidence            3468999999 6999999999999999 8999999875322111111221       11345577899999998876432


Q ss_pred             hhhhcccHHHHccCCC--CCEEEEcCCCcc
Q 026360          105 KTRGMFDKDRIAKMKK--GVLIVNNARGAI  132 (240)
Q Consensus       105 ~t~~~i~~~~l~~mk~--gailIN~srg~~  132 (240)
                      ..  ......+..|+.  ...||++|....
T Consensus       101 ~~--~~~~~~~~~~~~~~~~~iV~iSS~~~  128 (236)
T 3qvo_A          101 LD--IQANSVIAAMKACDVKRLIFVLSLGI  128 (236)
T ss_dssp             HH--HHHHHHHHHHHHTTCCEEEEECCCCC
T ss_pred             hh--HHHHHHHHHHHHcCCCEEEEEeccee
Confidence            21  112233444432  246888887443

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=97.04  E-value=0.00035  Score=61.43  Aligned_cols=89  Identities=20%  Similarity=0.156  Sum_probs=65.5

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceec-----CCHHhh----cC--cCCEEEEcCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDTM----LP--KCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l~el----l~--~aDiVvl~lp~  102 (240)
                      .|.+|.|+|.|.+|...++.++..|+ +|++.++++.+.+.++++|+..+     .++.+.    ..  ..|+|+-++..
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v~d~~g~  245 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKVVIAGGD  245 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence            58899999999999999999999999 79999987655677777886432     122221    21  47888888763


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEEcC
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      .+     .....++.++++..++.++
T Consensus       246 ~~-----~~~~~~~~l~~~G~~v~~G  266 (352)
T 3fpc_A          246 VH-----TFAQAVKMIKPGSDIGNVN  266 (352)
T ss_dssp             TT-----HHHHHHHHEEEEEEEEECC
T ss_pred             hH-----HHHHHHHHHhcCCEEEEec
Confidence            21     1245667788888888886

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=97.03  E-value=0.00097  Score=60.59  Aligned_cols=89  Identities=16%  Similarity=0.073  Sum_probs=66.0

Q ss_pred             CCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCH------------------------H--
Q 026360           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDL------------------------D--   87 (240)
Q Consensus        35 ~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l------------------------~--   87 (240)
                      .|++|.|+|. |.||..+++.++..|++|++.+++....+.++++|+..+-+.                        +  
T Consensus       220 ~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  299 (447)
T 4a0s_A          220 QGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLV  299 (447)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecccccccccccccccccchhhhHHHHHH
Confidence            5899999998 999999999999999999998876655666777776422111                        1  


Q ss_pred             -hhc-CcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCC
Q 026360           88 -TML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus        88 -ell-~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~sr  129 (240)
                       ++. ...|+|+-++..  .    .....+..++++..+|+++.
T Consensus       300 ~~~~g~g~Dvvid~~G~--~----~~~~~~~~l~~~G~iv~~G~  337 (447)
T 4a0s_A          300 VEKAGREPDIVFEHTGR--V----TFGLSVIVARRGGTVVTCGS  337 (447)
T ss_dssp             HHHHSSCCSEEEECSCH--H----HHHHHHHHSCTTCEEEESCC
T ss_pred             HHHhCCCceEEEECCCc--h----HHHHHHHHHhcCCEEEEEec
Confidence             111 358999988862  1    12456778999999999974

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=97.03  E-value=0.001  Score=58.77  Aligned_cols=67  Identities=21%  Similarity=0.283  Sum_probs=43.4

Q ss_pred             CeEEEEccChHHHHHHHHhccC-CCEEEEE-cCCCCCh-hHHHhcCcee-----------------cCCHHhhcCcCCEE
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLLYH-DRVKMDP-QLEKETGAKF-----------------EEDLDTMLPKCDIV   96 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~-G~~V~~~-d~~~~~~-~~~~~~g~~~-----------------~~~l~ell~~aDiV   96 (240)
                      .+|||+|+|.||+.+++.+... ++++.+. |+++... ..+...|+..                 ..+.+++++++|+|
T Consensus         2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV   81 (340)
T 1b7g_O            2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV   81 (340)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred             eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEE
Confidence            3799999999999999998764 5676544 5543211 1222223322                 12444556689999


Q ss_pred             EEcCCCC
Q 026360           97 VVNTPLT  103 (240)
Q Consensus        97 vl~lp~~  103 (240)
                      +.|+|..
T Consensus        82 ~~aTp~~   88 (340)
T 1b7g_O           82 VDTTPNG   88 (340)
T ss_dssp             EECCSTT
T ss_pred             EECCCCc
Confidence            9999854

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=97.03  E-value=0.00035  Score=61.93  Aligned_cols=89  Identities=19%  Similarity=0.141  Sum_probs=64.4

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceec-----CCHHhhcC-----cCCEEEEcCCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDTMLP-----KCDIVVVNTPLT  103 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell~-----~aDiVvl~lp~~  103 (240)
                      .|.+|.|+|.|.+|...++.++..|+ +|++.++++...+.++++|+..+     .++.+.+.     ..|+|+-++...
T Consensus       190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g~~  269 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSP  269 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECCCCH
Confidence            58899999999999999999999999 69999987656666777776421     12222221     378888887621


Q ss_pred             hhhhhcccHHHHccCCCCCEEEEcC
Q 026360          104 EKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       104 ~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      +     .....++.++++..++.++
T Consensus       270 ~-----~~~~~~~~l~~~G~iv~~G  289 (371)
T 1f8f_A          270 E-----ILKQGVDALGILGKIAVVG  289 (371)
T ss_dssp             H-----HHHHHHHTEEEEEEEEECC
T ss_pred             H-----HHHHHHHHHhcCCEEEEeC
Confidence            1     1235677788888888886

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=97.03  E-value=0.00039  Score=60.67  Aligned_cols=93  Identities=15%  Similarity=0.166  Sum_probs=58.1

Q ss_pred             CeEEEEccChHHHHHHHHhccCC--CEEEEEcCCCCChhH-HHhc--------CceecCCHHhhcCcCCEEEEcCCCChh
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQL-EKET--------GAKFEEDLDTMLPKCDIVVVNTPLTEK  105 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G--~~V~~~d~~~~~~~~-~~~~--------g~~~~~~l~ell~~aDiVvl~lp~~~~  105 (240)
                      +||+|||.|.+|.+++..+...+  -++..+|.+....+. +.++        ......+..+.+++||+|+++.+....
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~~~   80 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVAQR   80 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence            58999999999999999988665  479999986422221 1111        112111235679999999999864321


Q ss_pred             -----------hhhccc--HHHHccCCCCCEEEEcCC
Q 026360          106 -----------TRGMFD--KDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       106 -----------t~~~i~--~~~l~~mk~gailIN~sr  129 (240)
                                 +..++.  .+.+....|++++++++.
T Consensus        81 ~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  117 (310)
T 2xxj_A           81 PGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATN  117 (310)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence                       011110  112233478999999854

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=97.02  E-value=0.00058  Score=58.54  Aligned_cols=38  Identities=16%  Similarity=0.154  Sum_probs=34.7

Q ss_pred             cccCCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           32 YDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        32 ~~l~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      .++.|+++.|+| .|.+|++++..|...|++|++++|+.
T Consensus       115 ~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~  153 (287)
T 1lu9_A          115 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL  153 (287)
T ss_dssp             SCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCH
Confidence            457899999999 99999999999999999999999864

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=97.02  E-value=0.0018  Score=57.59  Aligned_cols=94  Identities=14%  Similarity=0.091  Sum_probs=58.5

Q ss_pred             CCeEEEEc-cChHHHHHHHHhccCC------CEEEEEc-CCCC-C-hhH----HH---hcCceecCCHHhhcCcCCEEEE
Q 026360           36 GKTVGTVG-CGRIGKLLLQRLKPFN------CNLLYHD-RVKM-D-PQL----EK---ETGAKFEEDLDTMLPKCDIVVV   98 (240)
Q Consensus        36 g~~vgIIG-~G~iG~~~A~~l~~~G------~~V~~~d-~~~~-~-~~~----~~---~~g~~~~~~l~ell~~aDiVvl   98 (240)
                      .++|+|+| .|.+|+.+.+.|...+      .++..+. ++.. . ...    ..   ...+... +.+ .+..+|+|++
T Consensus         9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~-~~~-~~~~~DvVf~   86 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPT-EAA-VLGGHDAVFL   86 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEEC-CHH-HHTTCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccC-CHH-HhcCCCEEEE
Confidence            36899999 9999999999998776      4666664 3221 1 110    11   1111122 333 3568999999


Q ss_pred             cCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHH
Q 026360           99 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQA  137 (240)
Q Consensus        99 ~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~a  137 (240)
                      |+|..      ...+....++.|..+|+.|...-.+..+
T Consensus        87 alg~~------~s~~~~~~~~~G~~vIDlSa~~R~~~~~  119 (352)
T 2nqt_A           87 ALPHG------HSAVLAQQLSPETLIIDCGADFRLTDAA  119 (352)
T ss_dssp             CCTTS------CCHHHHHHSCTTSEEEECSSTTTCSCHH
T ss_pred             CCCCc------chHHHHHHHhCCCEEEEECCCccCCcch
Confidence            99943      2344444446689999998665544433

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=97.02  E-value=0.003  Score=57.94  Aligned_cols=96  Identities=17%  Similarity=0.120  Sum_probs=67.0

Q ss_pred             ccCCCeEEEEccC----------hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc-------------CceecCCHHhh
Q 026360           33 DLEGKTVGTVGCG----------RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-------------GAKFEEDLDTM   89 (240)
Q Consensus        33 ~l~g~~vgIIG~G----------~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~-------------g~~~~~~l~el   89 (240)
                      .+.|++|+|+|+.          .-...+++.|...|.+|.+|||.-...+.....             ++....+..+.
T Consensus       326 ~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (467)
T 2q3e_A          326 TVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEA  405 (467)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHCC------CHHHHHEEECSSHHHH
T ss_pred             ccCCCEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHHHhhhhccccccccccccCceeecCCHHHH
Confidence            4789999999975          377889999999999999999963222111111             24455678889


Q ss_pred             cCcCCEEEEcCCCChhhhhcccH-HHHccCCCCCEEEEcCCCc
Q 026360           90 LPKCDIVVVNTPLTEKTRGMFDK-DRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus        90 l~~aDiVvl~lp~~~~t~~~i~~-~~l~~mk~gailIN~srg~  131 (240)
                      ++.+|+|++++.-. +.+.+ +- .....|+...+++|. |+-
T Consensus       406 ~~~ad~~vi~t~~~-~f~~~-~~~~~~~~~~~~~~i~D~-r~~  445 (467)
T 2q3e_A          406 CDGAHAVVICTEWD-MFKEL-DYERIHKKMLKPAFIFDG-RRV  445 (467)
T ss_dssp             HTTCSEEEECSCCG-GGGGS-CHHHHHHHSCSSCEEEES-SCT
T ss_pred             HhCCcEEEEecCCh-hhhcC-CHHHHHHhcCCCCEEEeC-CCc
Confidence            99999999999743 33333 43 344567776668886 553

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=97.02  E-value=0.00055  Score=56.61  Aligned_cols=68  Identities=19%  Similarity=0.184  Sum_probs=47.0

Q ss_pred             CCCeEEEEccChHHHHHHHHh--ccCCCEEE-EEcCCCC-ChhH--HHhcCceecCCHHhhcCc--CCEEEEcCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRL--KPFNCNLL-YHDRVKM-DPQL--EKETGAKFEEDLDTMLPK--CDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l--~~~G~~V~-~~d~~~~-~~~~--~~~~g~~~~~~l~ell~~--aDiVvl~lp~  102 (240)
                      ...+++|+|+|++|+.+++.+  ...|+++. ++|.++. ....  .....+...+++++++++  .|++++++|.
T Consensus        83 ~~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~GvpV~~~~dL~~~v~~~~Id~vIIAvPs  158 (212)
T 3keo_A           83 STTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTINDHLIDSDIETAILTVPS  158 (212)
T ss_dssp             SCEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTTCCBEEEGGGHHHHC-CCSCCEEEECSCG
T ss_pred             CCCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeECCeEEeCHHHHHHHHHHcCCCEEEEecCc
Confidence            346899999999999999984  45688855 5677664 3322  122223345678888875  8999999994

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=97.01  E-value=0.0073  Score=54.78  Aligned_cols=108  Identities=17%  Similarity=0.227  Sum_probs=72.1

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEE-EEcCC-------CCChhHHH----hcC-ce--ecCCHHhhc-CcCCE
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRV-------KMDPQLEK----ETG-AK--FEEDLDTML-PKCDI   95 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~-~~d~~-------~~~~~~~~----~~g-~~--~~~~l~ell-~~aDi   95 (240)
                      .+++|+++.|.|+|++|+.+|+.|...|++|+ +.|.+       ..+.+...    +.+ +.  .. +.++++ ..||+
T Consensus       214 ~~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~-~~~e~~~~~~DV  292 (419)
T 3aoe_E          214 LDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDL-APEEVFGLEAEV  292 (419)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCCCB-CTTTGGGSSCSE
T ss_pred             CCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcceeec-cchhhhccCceE
Confidence            46899999999999999999999999999988 44542       22222221    122 11  11 223333 47999


Q ss_pred             EEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360           96 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus        96 Vvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      ++-|..     .+.++.+....++- .+|+..+.+.+ ..++ .+.|.+..+.
T Consensus       293 liP~A~-----~n~i~~~~A~~l~a-k~V~EgAN~p~-t~~A-~~~L~~~Gi~  337 (419)
T 3aoe_E          293 LVLAAR-----EGALDGDRARQVQA-QAVVEVANFGL-NPEA-EAYLLGKGAL  337 (419)
T ss_dssp             EEECSC-----TTCBCHHHHTTCCC-SEEEECSTTCB-CHHH-HHHHHHHTCE
T ss_pred             EEeccc-----ccccccchHhhCCc-eEEEECCCCcC-CHHH-HHHHHHCCCE
Confidence            998874     56677777777753 47888887775 4444 4566666665

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=97.01  E-value=0.0003  Score=63.14  Aligned_cols=69  Identities=20%  Similarity=0.182  Sum_probs=52.0

Q ss_pred             CCCeEEEEccCh---HHHHHHHHhccCC-CEEE--EEcCCCCChh-HHHhcCc---eecCCHHhhcCc-------CCEEE
Q 026360           35 EGKTVGTVGCGR---IGKLLLQRLKPFN-CNLL--YHDRVKMDPQ-LEKETGA---KFEEDLDTMLPK-------CDIVV   97 (240)
Q Consensus        35 ~g~~vgIIG~G~---iG~~~A~~l~~~G-~~V~--~~d~~~~~~~-~~~~~g~---~~~~~l~ell~~-------aDiVv   97 (240)
                      +-.+|||||+|.   ||+..+..++..+ ++++  ++|+++...+ .++..|+   ..+.++++++++       .|+|+
T Consensus        11 ~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~   90 (398)
T 3dty_A           11 QPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVS   90 (398)
T ss_dssp             SCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEE
T ss_pred             CcceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEE
Confidence            346899999999   9999988877654 6766  4687654333 3455677   567899999975       89999


Q ss_pred             EcCCCC
Q 026360           98 VNTPLT  103 (240)
Q Consensus        98 l~lp~~  103 (240)
                      +++|..
T Consensus        91 i~tp~~   96 (398)
T 3dty_A           91 IATPNG   96 (398)
T ss_dssp             EESCGG
T ss_pred             ECCCcH
Confidence            999954

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.01  E-value=0.0026  Score=51.21  Aligned_cols=94  Identities=15%  Similarity=0.128  Sum_probs=59.1

Q ss_pred             CeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-CCHH----hhcCcCCEEEEcCCCChhhhh--
Q 026360           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-EDLD----TMLPKCDIVVVNTPLTEKTRG--  108 (240)
Q Consensus        37 ~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~~l~----ell~~aDiVvl~lp~~~~t~~--  108 (240)
                      ++|.|.| .|.||+.+++.|.+.|++|++.+|++....... .++..+ .|+.    +.+..+|+|+.+.........  
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~   79 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH-KDINILQKDIFDLTLSDLSDQNVVVDAYGISPDEAEKH   79 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC-SSSEEEECCGGGCCHHHHTTCSEEEECCCSSTTTTTSH
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc-CCCeEEeccccChhhhhhcCCCEEEECCcCCccccchH
Confidence            5799999 599999999999999999999998753222111 233211 1221    677899999998865432111  


Q ss_pred             -cccHHHHccCCC--CCEEEEcCCCc
Q 026360          109 -MFDKDRIAKMKK--GVLIVNNARGA  131 (240)
Q Consensus       109 -~i~~~~l~~mk~--gailIN~srg~  131 (240)
                       ......++.|+.  ...+|.+|...
T Consensus        80 ~~~~~~l~~a~~~~~~~~~v~~SS~~  105 (221)
T 3ew7_A           80 VTSLDHLISVLNGTVSPRLLVVGGAA  105 (221)
T ss_dssp             HHHHHHHHHHHCSCCSSEEEEECCCC
T ss_pred             HHHHHHHHHHHHhcCCceEEEEecce
Confidence             112334444543  35677776543

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=97.00  E-value=0.00044  Score=60.32  Aligned_cols=89  Identities=21%  Similarity=0.172  Sum_probs=65.0

Q ss_pred             CCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHH-HhcCceec-----CCHHhhc-----CcCCEEEEcCCC
Q 026360           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KETGAKFE-----EDLDTML-----PKCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~-~~~g~~~~-----~~l~ell-----~~aDiVvl~lp~  102 (240)
                      .|++|.|+|. |.||..+++.++..|++|++.++++...+.+ +++|+..+     .++.+.+     ...|+++.++..
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~  228 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNVGG  228 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEECCCc
Confidence            5899999998 9999999999999999999999876555555 66665321     1222222     247888887762


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEEcCC
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN~sr  129 (240)
                       +     .....++.++++..+|.++.
T Consensus       229 -~-----~~~~~~~~l~~~G~iv~~G~  249 (336)
T 4b7c_A          229 -E-----ILDTVLTRIAFKARIVLCGA  249 (336)
T ss_dssp             -H-----HHHHHHTTEEEEEEEEECCC
T ss_pred             -c-----hHHHHHHHHhhCCEEEEEee
Confidence             1     23466778899999998874

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.99  E-value=0.0014  Score=55.15  Aligned_cols=66  Identities=18%  Similarity=0.215  Sum_probs=49.6

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec----CCHHhhcCcCCEEEEcCCCC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLDTMLPKCDIVVVNTPLT  103 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~ell~~aDiVvl~lp~~  103 (240)
                      .++|.|.|.|.+|+.+++.|.+.|++|++.+|++.........+++.+    .+++  +.++|+|+.+....
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~~   74 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAPD   74 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCCB
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc--cCCCCEEEECCCcc
Confidence            479999999999999999999999999999997644443333444321    2333  78899998887643

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=96.96  E-value=0.0012  Score=58.74  Aligned_cols=66  Identities=21%  Similarity=0.307  Sum_probs=46.8

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCce--ec---CCHHhhcCcCCEEEE
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK--FE---EDLDTMLPKCDIVVV   98 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~--~~---~~l~ell~~aDiVvl   98 (240)
                      .+.+++|+|+|.|.+|+.+++.++.+|++|+++|+.+............  ..   +.+.++++++|+|+.
T Consensus         9 ~~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~   79 (377)
T 3orq_A            9 LKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITY   79 (377)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCccee
Confidence            4679999999999999999999999999999999865332111100010  11   225567788998855

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=96.96  E-value=0.0014  Score=56.35  Aligned_cols=102  Identities=18%  Similarity=0.215  Sum_probs=63.6

Q ss_pred             CeEEEEccChHHHHHHHHhcc----CCCEEE-EEcCCCCChhHHHhcCceecCCHHhhcC--cCCEEEEcCCCChhhhhc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKP----FNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~----~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDiVvl~lp~~~~t~~~  109 (240)
                      .+|||||+|.||+..++.+..    -+.+++ ++|++..    +...|+.+ .+++++++  +.|+|++++|....  .-
T Consensus         8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~----a~~~g~~~-~~~~ell~~~~vD~V~i~tp~~~H--~~   80 (294)
T 1lc0_A            8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRREL----GSLDEVRQ-ISLEDALRSQEIDVAYICSESSSH--ED   80 (294)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCC----CEETTEEB-CCHHHHHHCSSEEEEEECSCGGGH--HH
T ss_pred             ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHH----HHHcCCCC-CCHHHHhcCCCCCEEEEeCCcHhH--HH
Confidence            589999999999999988865    356755 5566432    12335553 69999986  68999999994322  11


Q ss_pred             ccHHHHccCCCCC-EEEEc-CCCcccCHHHHHHHHHhCCcc
Q 026360          110 FDKDRIAKMKKGV-LIVNN-ARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       110 i~~~~l~~mk~ga-ilIN~-srg~~vd~~aL~~aL~~g~i~  148 (240)
                      +.   ...++.|. +++.- -.-.+-+.++|.++.++.++.
T Consensus        81 ~~---~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~  118 (294)
T 1lc0_A           81 YI---RQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRV  118 (294)
T ss_dssp             HH---HHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCC
T ss_pred             HH---HHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCE
Confidence            22   22334444 55542 112333456677777665554

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=96.96  E-value=0.00058  Score=60.19  Aligned_cols=88  Identities=22%  Similarity=0.231  Sum_probs=65.2

Q ss_pred             CCCeEEEE-ccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-----CCHHhhc-----CcCCEEEEcCCCC
Q 026360           35 EGKTVGTV-GCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML-----PKCDIVVVNTPLT  103 (240)
Q Consensus        35 ~g~~vgII-G~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell-----~~aDiVvl~lp~~  103 (240)
                      .|++|.|+ |.|.+|..+++.++..|++|++.++++...+.++++|...+     .++.+.+     ...|+++.++.. 
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~-  245 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIGA-  245 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEEEEESCCG-
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceEEEECCCH-
Confidence            58999999 68999999999999999999999987666666677775421     1232222     247888888762 


Q ss_pred             hhhhhcccHHHHccCCCCCEEEEcC
Q 026360          104 EKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       104 ~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      +     .....+..++++..++.++
T Consensus       246 ~-----~~~~~~~~l~~~G~iv~~g  265 (353)
T 4dup_A          246 A-----YFERNIASLAKDGCLSIIA  265 (353)
T ss_dssp             G-----GHHHHHHTEEEEEEEEECC
T ss_pred             H-----HHHHHHHHhccCCEEEEEE
Confidence            1     2345677888888888887

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=96.96  E-value=0.0029  Score=56.92  Aligned_cols=96  Identities=15%  Similarity=0.084  Sum_probs=65.5

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHH
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  115 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l  115 (240)
                      -.++-|+|.|.+|+.+++.++.+|++|+++|+.+...            + .+-+..+|-++...|  .   ..+..  +
T Consensus       204 ~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~~------------~-~~~fp~a~~~~~~~p--~---~~~~~--~  263 (386)
T 2we8_A          204 RPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVFA------------T-TARFPTADEVVVDWP--H---RYLAA--Q  263 (386)
T ss_dssp             CCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTTS------------C-TTTCSSSSEEEESCH--H---HHHHH--H
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhc------------c-cccCCCceEEEeCCh--H---HHHHh--h
Confidence            4589999999999999999999999999999764211            1 112345665555444  1   11111  1


Q ss_pred             c---cCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEE
Q 026360          116 A---KMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS  151 (240)
Q Consensus       116 ~---~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~  151 (240)
                      .   .+.+++.+|=+.++.-.|...|..+|+++...+.+
T Consensus       264 ~~~~~~~~~t~vvvlTh~~~~D~~~L~~aL~~~~~~YIG  302 (386)
T 2we8_A          264 AEAGAIDARTVVCVLTHDPKFDVPLLEVALRLPDIAYIG  302 (386)
T ss_dssp             HHHTCCCTTCEEEECCCCHHHHHHHHHHHTTSSCCSEEE
T ss_pred             ccccCCCCCcEEEEEECChHhHHHHHHHHhcCCCCCEEE
Confidence            1   25677888888888888888888888876344443

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=96.96  E-value=0.00069  Score=58.91  Aligned_cols=88  Identities=19%  Similarity=0.161  Sum_probs=65.2

Q ss_pred             CCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-----CCHHhh----c--CcCCEEEEcCCC
Q 026360           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTM----L--PKCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~el----l--~~aDiVvl~lp~  102 (240)
                      .|++|.|+| .|.+|..+++.++..|++|++.++++...+.++++|...+     .++.+.    .  ...|+|+.++..
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~  219 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDGVGQ  219 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEESSCG
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCceEEEECCCh
Confidence            589999999 7999999999999999999999987656666677775321     122222    1  257888888762


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEEcC
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                           . .....++.++++..++.++
T Consensus       220 -----~-~~~~~~~~l~~~G~iv~~g  239 (325)
T 3jyn_A          220 -----D-TWLTSLDSVAPRGLVVSFG  239 (325)
T ss_dssp             -----G-GHHHHHTTEEEEEEEEECC
T ss_pred             -----H-HHHHHHHHhcCCCEEEEEe
Confidence                 1 2346678889999998887

>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A

Probab=96.95  E-value=0.0045  Score=53.89  Aligned_cols=94  Identities=19%  Similarity=0.258  Sum_probs=67.0

Q ss_pred             ccCCCeEEEEcc---ChHHHHHHHHhccC-CCEEEEEcCCCC--Chh---HHHhcCce--ecCCHHhhcCcCCEEEEcCC
Q 026360           33 DLEGKTVGTVGC---GRIGKLLLQRLKPF-NCNLLYHDRVKM--DPQ---LEKETGAK--FEEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        33 ~l~g~~vgIIG~---G~iG~~~A~~l~~~-G~~V~~~d~~~~--~~~---~~~~~g~~--~~~~l~ell~~aDiVvl~lp  101 (240)
                      .+.|++|++||=   |++.++++..+..+ |++|.+..|...  +.+   .+++.|..  ..++++++++++|+|....-
T Consensus       148 ~l~glkva~vGD~~~~rva~Sl~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~~  227 (306)
T 4ekn_B          148 RIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVTRI  227 (306)
T ss_dssp             CSTTCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCGGGCCTTCSEEEECCC
T ss_pred             CcCCCEEEEEcCCCCCcHHHHHHHHHHhcCCCEEEEECCcccccCHHHHHHHHHcCCEEEEEcCHHHHhcCCCEEEeCCc
Confidence            589999999995   68999999999999 999999987532  222   22344543  45799999999999987532


Q ss_pred             ------CChhh-----hhcccHHHHccCCCCCEEEEcC
Q 026360          102 ------LTEKT-----RGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       102 ------~~~~t-----~~~i~~~~l~~mk~gailIN~s  128 (240)
                            ..++.     ..-++.+.++.  ++++|..+.
T Consensus       228 q~er~~~~~e~~~~~~~y~v~~~~l~~--~~ai~mH~l  263 (306)
T 4ekn_B          228 QKERFPDPNEYEKVKGSYKIKREYVEG--KKFIIMHPL  263 (306)
T ss_dssp             CGGGCCSHHHHHHHHHHHCBCHHHHTT--CCCEEECCS
T ss_pred             ccccCCCHHHHHHhccCcEECHHHHcC--CCCEEECCC
Confidence                  11111     13457777765  777777664

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=96.95  E-value=0.0014  Score=57.61  Aligned_cols=67  Identities=28%  Similarity=0.335  Sum_probs=47.0

Q ss_pred             CeEEEEccChHHHHHHHHhccC-CCEEE-EEcCCCCChh-HHHhcCc------------------eecCCHHhhcCcCCE
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQ-LEKETGA------------------KFEEDLDTMLPKCDI   95 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~-G~~V~-~~d~~~~~~~-~~~~~g~------------------~~~~~l~ell~~aDi   95 (240)
                      .+|||+|+|.||+.+++.+... ++++. +.|+++.... .++..|+                  ....+.++++.+.|+
T Consensus         3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDv   82 (334)
T 2czc_A            3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDI   82 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSE
T ss_pred             cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCE
Confidence            4899999999999999998765 56765 4466433222 2222332                  223578888889999


Q ss_pred             EEEcCCCC
Q 026360           96 VVVNTPLT  103 (240)
Q Consensus        96 Vvl~lp~~  103 (240)
                      |+.|+|..
T Consensus        83 V~~aTp~~   90 (334)
T 2czc_A           83 IVDATPGG   90 (334)
T ss_dssp             EEECCSTT
T ss_pred             EEECCCcc
Confidence            99999954

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.94  E-value=0.00047  Score=59.21  Aligned_cols=38  Identities=26%  Similarity=0.389  Sum_probs=35.3

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      .+++|++|.|||.|.+|...++.|...|++|+++++..
T Consensus         9 ~~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A            9 HQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             ECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             EEcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            47899999999999999999999999999999999754

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=96.94  E-value=0.00091  Score=58.25  Aligned_cols=91  Identities=19%  Similarity=0.247  Sum_probs=57.7

Q ss_pred             eEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhH-HHh-------c--C--ceecCCHHhhcCcCCEEEEcCCCCh
Q 026360           38 TVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-EKE-------T--G--AKFEEDLDTMLPKCDIVVVNTPLTE  104 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~-~~~-------~--g--~~~~~~l~ell~~aDiVvl~lp~~~  104 (240)
                      ||+|||.|.+|..+|..+...|+ +|..+|.+....+. +.+       .  .  +....+. +.+++||+|+++.+...
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~~   79 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIGR   79 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCCC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCCC
Confidence            68999999999999998876676 69999987533221 110       1  2  2222455 67899999999976432


Q ss_pred             h-----------hhhccc--HHHHccCCCCCEEEEcCC
Q 026360          105 K-----------TRGMFD--KDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       105 ~-----------t~~~i~--~~~l~~mk~gailIN~sr  129 (240)
                      .           +..++.  .+.+....|++++|+++.
T Consensus        80 k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  117 (308)
T 2d4a_B           80 KPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTN  117 (308)
T ss_dssp             CSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            1           111110  012233358999999854

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=96.94  E-value=0.00084  Score=59.49  Aligned_cols=67  Identities=12%  Similarity=0.087  Sum_probs=49.5

Q ss_pred             CCeEEEEccChHHH-HHHHHhccCCCEEE-EEcCCCCChh-HHHhcC-ceecCCHHhhcCc--CCEEEEcCCC
Q 026360           36 GKTVGTVGCGRIGK-LLLQRLKPFNCNLL-YHDRVKMDPQ-LEKETG-AKFEEDLDTMLPK--CDIVVVNTPL  102 (240)
Q Consensus        36 g~~vgIIG~G~iG~-~~A~~l~~~G~~V~-~~d~~~~~~~-~~~~~g-~~~~~~l~ell~~--aDiVvl~lp~  102 (240)
                      -.+|||||+|.+|. .++..+..-+++++ ++|+++...+ .++..| ...+.++++++++  .|+|++++|.
T Consensus        26 ~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~   98 (361)
T 3u3x_A           26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVS   98 (361)
T ss_dssp             CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCH
T ss_pred             CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCCh
Confidence            46899999999995 56666666788855 6677653333 344555 4566799999976  8999999984

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.94  E-value=0.001  Score=52.93  Aligned_cols=67  Identities=19%  Similarity=0.150  Sum_probs=47.9

Q ss_pred             CCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCcCCEEEEcCCC
Q 026360           36 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        36 g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~ell~~aDiVvl~lp~  102 (240)
                      +++|.|.|. |.+|+.+++.|...|++|++.+|++.........++..       .++++++++.+|+|+.+...
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~   77 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT   77 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECccC
Confidence            479999997 99999999999999999999998653221110112221       12455778889999888764

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=96.93  E-value=0.00078  Score=59.39  Aligned_cols=89  Identities=11%  Similarity=0.104  Sum_probs=64.3

Q ss_pred             CCCeEEEEccChHHHHH-HHHh-ccCCCE-EEEEcCCCC---ChhHHHhcCceec----CCHHhhc---CcCCEEEEcCC
Q 026360           35 EGKTVGTVGCGRIGKLL-LQRL-KPFNCN-LLYHDRVKM---DPQLEKETGAKFE----EDLDTML---PKCDIVVVNTP  101 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~-A~~l-~~~G~~-V~~~d~~~~---~~~~~~~~g~~~~----~~l~ell---~~aDiVvl~lp  101 (240)
                      .+.+|.|+|.|.+|... ++.+ +.+|++ |++.++++.   +.+.++++|+..+    .++.++.   ...|+|+-++.
T Consensus       172 ~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~i~~~~gg~Dvvid~~g  251 (357)
T 2b5w_A          172 DPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYVDSRQTPVEDVPDVYEQMDFIYEATG  251 (357)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEEETTTSCGGGHHHHSCCEEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCcccCCCccCHHHHHHhCCCCCEEEECCC
Confidence            34899999999999999 9999 999998 999998776   5677778887543    1222211   14788888876


Q ss_pred             CChhhhhcccHHHHccCCCCCEEEEcC
Q 026360          102 LTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       102 ~~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      ..+.     ....++.++++..++.++
T Consensus       252 ~~~~-----~~~~~~~l~~~G~iv~~g  273 (357)
T 2b5w_A          252 FPKH-----AIQSVQALAPNGVGALLG  273 (357)
T ss_dssp             CHHH-----HHHHHHHEEEEEEEEECC
T ss_pred             ChHH-----HHHHHHHHhcCCEEEEEe
Confidence            3211     235566778888888876

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=96.92  E-value=0.00078  Score=58.44  Aligned_cols=88  Identities=22%  Similarity=0.181  Sum_probs=67.6

Q ss_pred             CCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-----CC-HHhhcCcCCEEEEcCCCChhhh
Q 026360           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----ED-LDTMLPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        35 ~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~-l~ell~~aDiVvl~lp~~~~t~  107 (240)
                      .|.+|.|+| .|.+|...++.++..|++|++.++.. ..+.++++|+..+     .+ +.+.+...|+++-++..     
T Consensus       152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~-~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~g~-----  225 (321)
T 3tqh_A          152 QGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKR-NHAFLKALGAEQCINYHEEDFLLAISTPVDAVIDLVGG-----  225 (321)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHH-HHHHHHHHTCSEEEETTTSCHHHHCCSCEEEEEESSCH-----
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccc-hHHHHHHcCCCEEEeCCCcchhhhhccCCCEEEECCCc-----
Confidence            588999997 99999999999999999998887533 3566677776421     23 55666789999998862     


Q ss_pred             hcccHHHHccCCCCCEEEEcCC
Q 026360          108 GMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~sr  129 (240)
                      ... ...++.++++..++.++.
T Consensus       226 ~~~-~~~~~~l~~~G~iv~~g~  246 (321)
T 3tqh_A          226 DVG-IQSIDCLKETGCIVSVPT  246 (321)
T ss_dssp             HHH-HHHGGGEEEEEEEEECCS
T ss_pred             HHH-HHHHHhccCCCEEEEeCC
Confidence            112 567888999999999864

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=96.91  E-value=0.00064  Score=59.68  Aligned_cols=89  Identities=24%  Similarity=0.286  Sum_probs=62.1

Q ss_pred             CCCeEEEE-ccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec----CCHHhhc-----CcCCEEEEcCCCCh
Q 026360           35 EGKTVGTV-GCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLDTML-----PKCDIVVVNTPLTE  104 (240)
Q Consensus        35 ~g~~vgII-G~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~ell-----~~aDiVvl~lp~~~  104 (240)
                      .|.+|.|+ |.|.+|...++.++..|++|++.++++...+.++++|+..+    +++.+.+     ...|+|+-++.. +
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv~d~~g~-~  228 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYVFCTFNT-D  228 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCSEEECTTSCHHHHHHHHTCCCEEEEEESSCH-H
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEECCccHHHHHHHhCCCCccEEEECCCc-h
Confidence            68999999 69999999999999999999999987656666777775422    1222222     246888777651 1


Q ss_pred             hhhhcccHHHHccCCCCCEEEEcC
Q 026360          105 KTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       105 ~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                          ..-...++.++++..+|.++
T Consensus       229 ----~~~~~~~~~l~~~G~iv~~~  248 (346)
T 3fbg_A          229 ----MYYDDMIQLVKPRGHIATIV  248 (346)
T ss_dssp             ----HHHHHHHHHEEEEEEEEESS
T ss_pred             ----HHHHHHHHHhccCCEEEEEC
Confidence                11134556677877777764

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=96.91  E-value=0.0069  Score=54.97  Aligned_cols=109  Identities=22%  Similarity=0.343  Sum_probs=69.3

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEE-EEcCC-------CCChhHHHhc----Cc------------eecCCHH
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRV-------KMDPQLEKET----GA------------KFEEDLD   87 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~-~~d~~-------~~~~~~~~~~----g~------------~~~~~l~   87 (240)
                      .++.|+++.|.|+|++|+.+|+.|...|++|+ +.|.+       ..+.+...+.    +.            ..+.+.+
T Consensus       206 ~~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~~  285 (421)
T 1v9l_A          206 GGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPD  285 (421)
T ss_dssp             SCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTT
T ss_pred             CCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCch
Confidence            46899999999999999999999999999987 44442       1122222211    11            1121234


Q ss_pred             hhc-CcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360           88 TML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus        88 ell-~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      +++ ..||+++-|.-     .+.|+.+....++- .+|+-.+.+++ ..++ .+.|.+..+.
T Consensus       286 ~~~~~~~Dil~P~A~-----~~~I~~~~a~~l~a-k~V~EgAN~p~-t~~a-~~~l~~~Gi~  339 (421)
T 1v9l_A          286 AIFKLDVDIFVPAAI-----ENVIRGDNAGLVKA-RLVVEGANGPT-TPEA-ERILYERGVV  339 (421)
T ss_dssp             GGGGCCCSEEEECSC-----SSCBCTTTTTTCCC-SEEECCSSSCB-CHHH-HHHHHTTTCE
T ss_pred             hhhcCCccEEEecCc-----CCccchhhHHHcCc-eEEEecCCCcC-CHHH-HHHHHHCCCE
Confidence            444 46999988873     45566666666642 45666666664 5444 4667776665

>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}

Probab=96.91  E-value=0.0024  Score=57.87  Aligned_cols=67  Identities=16%  Similarity=0.303  Sum_probs=52.4

Q ss_pred             cCCCeEEEEc-----cCh---HHHHHHHHhccCCCEEEEEcCCCC--ChhHH-------HhcCc--eecCCHHhhcCcCC
Q 026360           34 LEGKTVGTVG-----CGR---IGKLLLQRLKPFNCNLLYHDRVKM--DPQLE-------KETGA--KFEEDLDTMLPKCD   94 (240)
Q Consensus        34 l~g~~vgIIG-----~G~---iG~~~A~~l~~~G~~V~~~d~~~~--~~~~~-------~~~g~--~~~~~l~ell~~aD   94 (240)
                      |.|++|+++|     +|.   +.++++..+..+|++|.+..|...  .++..       ...|.  ....+++++++++|
T Consensus       186 l~Glkva~vgd~~~s~Gd~nnVa~Sli~~l~~lG~~v~l~~P~~~~~~p~~~~~a~~~a~~~G~~v~~~~d~~eav~~AD  265 (418)
T 2yfk_A          186 LKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLGMDVVLAHPEGYEIMPEVEEVAKKNAAEFGGNFTKTNSMAEAFKDAD  265 (418)
T ss_dssp             GTTCEEEEECCCCSSSCCCSHHHHHHHHHHGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHSSEEEEESCHHHHHTTCS
T ss_pred             cCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCEEEEEcCHHHHhcCCC
Confidence            7899999997     354   999999999999999999998643  22221       23453  55679999999999


Q ss_pred             EEEEcC
Q 026360           95 IVVVNT  100 (240)
Q Consensus        95 iVvl~l  100 (240)
                      +|...+
T Consensus       266 VVytd~  271 (418)
T 2yfk_A          266 VVYPKS  271 (418)
T ss_dssp             EEEECC
T ss_pred             EEEEcc
Confidence            999864

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=96.90  E-value=0.004  Score=55.37  Aligned_cols=88  Identities=15%  Similarity=0.218  Sum_probs=55.1

Q ss_pred             CCCeEEEEc-cChHHHHHHHHhccCC-CEEEEEcCCCCC-hhHHHhc----Cc---e-ecCCHHhhcCcCCEEEEcCCCC
Q 026360           35 EGKTVGTVG-CGRIGKLLLQRLKPFN-CNLLYHDRVKMD-PQLEKET----GA---K-FEEDLDTMLPKCDIVVVNTPLT  103 (240)
Q Consensus        35 ~g~~vgIIG-~G~iG~~~A~~l~~~G-~~V~~~d~~~~~-~~~~~~~----g~---~-~~~~l~ell~~aDiVvl~lp~~  103 (240)
                      ...+|+|+| .|.+|+.+++.|.... +++.++...... .......    +.   . .+.+ ++.+.++|+|+.|+|..
T Consensus        15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~~vDvVf~atp~~   93 (359)
T 1xyg_A           15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFSTVDAVFCCLPHG   93 (359)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGGGCSEEEECCCTT
T ss_pred             cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhcCCCEEEEcCCch
Confidence            346899999 8999999999998764 477766543211 1111111    11   0 1122 45567899999999943


Q ss_pred             hhhhhcccHHHHccCCCCCEEEEcCC
Q 026360          104 EKTRGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       104 ~~t~~~i~~~~l~~mk~gailIN~sr  129 (240)
                      .      ..+.....+.|+.+|+.+.
T Consensus        94 ~------s~~~a~~~~aG~~VId~sa  113 (359)
T 1xyg_A           94 T------TQEIIKELPTALKIVDLSA  113 (359)
T ss_dssp             T------HHHHHHTSCTTCEEEECSS
T ss_pred             h------HHHHHHHHhCCCEEEECCc
Confidence            2      2233333377899999885

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=96.90  E-value=0.0017  Score=56.06  Aligned_cols=89  Identities=13%  Similarity=0.199  Sum_probs=57.9

Q ss_pred             CeEEEEc-cChHHHHHHHHhc-cCCCEEE-EEcCCCCC-----hhHH---HhcCceecCCHHhhcCcCCEEEEcCCCChh
Q 026360           37 KTVGTVG-CGRIGKLLLQRLK-PFNCNLL-YHDRVKMD-----PQLE---KETGAKFEEDLDTMLPKCDIVVVNTPLTEK  105 (240)
Q Consensus        37 ~~vgIIG-~G~iG~~~A~~l~-~~G~~V~-~~d~~~~~-----~~~~---~~~g~~~~~~l~ell~~aDiVvl~lp~~~~  105 (240)
                      .+|+|+| +|+||+.+++.+. .-++++. ++|+++..     ....   ...|+....++++++.++|+|+-..+  |+
T Consensus        22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT~--p~   99 (288)
T 3ijp_A           22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFSQ--PQ   99 (288)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECSC--HH
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcCC--HH
Confidence            5899999 9999999999876 4578855 45765321     1111   12456667899999999999987765  32


Q ss_pred             hhhcccHHHHccCCCCCEEEEcCCC
Q 026360          106 TRGMFDKDRIAKMKKGVLIVNNARG  130 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailIN~srg  130 (240)
                      ..   .......++.|.-+|-...|
T Consensus       100 a~---~~~~~~~l~~Gv~vViGTTG  121 (288)
T 3ijp_A          100 AS---VLYANYAAQKSLIHIIGTTG  121 (288)
T ss_dssp             HH---HHHHHHHHHHTCEEEECCCC
T ss_pred             HH---HHHHHHHHHcCCCEEEECCC
Confidence            21   11122234556666666666

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=96.90  E-value=0.002  Score=56.69  Aligned_cols=96  Identities=11%  Similarity=0.176  Sum_probs=60.9

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCChhH-H---Hh---c----CceecCCHHhhcCcCCEEEEc
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQL-E---KE---T----GAKFEEDLDTMLPKCDIVVVN   99 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~~-~---~~---~----g~~~~~~l~ell~~aDiVvl~   99 (240)
                      ....++|+|||.|.||..+|..+...|.  ++..+|.+....+. +   ..   +    .+....+.+ .+++||+|+++
T Consensus        16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~-~~~~aDiVvi~   94 (331)
T 4aj2_A           16 QVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS-VTANSKLVIIT   94 (331)
T ss_dssp             -CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG-GGTTEEEEEEC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH-HhCCCCEEEEc
Confidence            3568899999999999999998887776  89999986421111 1   11   1    012234555 58999999998


Q ss_pred             CCCCh---hhh--------hccc--HHHHccCCCCCEEEEcCC
Q 026360          100 TPLTE---KTR--------GMFD--KDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       100 lp~~~---~t~--------~~i~--~~~l~~mk~gailIN~sr  129 (240)
                      .....   .++        .++.  .+.+....|++++++++.
T Consensus        95 aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN  137 (331)
T 4aj2_A           95 AGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN  137 (331)
T ss_dssp             CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             cCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            64221   111        1111  123334478999999984

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.90  E-value=0.00044  Score=62.49  Aligned_cols=66  Identities=15%  Similarity=0.179  Sum_probs=46.9

Q ss_pred             CeEEEEccChHHHHHHHHhccCC---CEEEEEcCCCCChhHH-Hhc------Ccee-------cCCHHhhcCc--CCEEE
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFN---CNLLYHDRVKMDPQLE-KET------GAKF-------EEDLDTMLPK--CDIVV   97 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G---~~V~~~d~~~~~~~~~-~~~------g~~~-------~~~l~ell~~--aDiVv   97 (240)
                      ++|+|+|.|.||+.+++.|...|   .+|.+++++....+.. ..+      .+..       .+++++++++  +|+|+
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVi   81 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVL   81 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEE
Confidence            58999999999999999999887   4899999875333221 111      1211       1345677777  89999


Q ss_pred             EcCCC
Q 026360           98 VNTPL  102 (240)
Q Consensus        98 l~lp~  102 (240)
                      .++|.
T Consensus        82 n~ag~   86 (405)
T 4ina_A           82 NIALP   86 (405)
T ss_dssp             ECSCG
T ss_pred             ECCCc
Confidence            99873

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.89  E-value=0.0011  Score=60.88  Aligned_cols=71  Identities=18%  Similarity=0.204  Sum_probs=49.5

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH---hcCceec-CC-HHhhcCcCCEEEEcCCCCh
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK---ETGAKFE-ED-LDTMLPKCDIVVVNTPLTE  104 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~---~~g~~~~-~~-l~ell~~aDiVvl~lp~~~  104 (240)
                      .+++|++|.|||.|.+|.+.++.|...|++|+++++... .+...   ..++... .. -++.+..+|+|+.+. ..+
T Consensus         8 ~~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~-~~~~~l~~~~~i~~~~~~~~~~~l~~~~lVi~at-~~~   83 (457)
T 1pjq_A            8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFI-PQFTVWANEGMLTLVEGPFDETLLDSCWLAIAAT-DDD   83 (457)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCC-HHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECC-SCH
T ss_pred             EECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCC-HHHHHHHhcCCEEEEECCCCccccCCccEEEEcC-CCH
Confidence            468999999999999999999999999999999998532 22211   1233221 11 134467889887754 444

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=96.89  E-value=0.001  Score=58.22  Aligned_cols=65  Identities=25%  Similarity=0.244  Sum_probs=47.7

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEE-EEcCCC-CChhHHH----hcC--ceecCCHHhhcCc--CCEEEEcCCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRVK-MDPQLEK----ETG--AKFEEDLDTMLPK--CDIVVVNTPL  102 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~-~~d~~~-~~~~~~~----~~g--~~~~~~l~ell~~--aDiVvl~lp~  102 (240)
                      .++||||+|.+|...++.+ .-+.+|+ ++|+++ ...+.+.    +.|  ...++++++++++  .|+|++++|.
T Consensus         3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~   77 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVF   77 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSH
T ss_pred             eEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCc
Confidence            4899999999999887777 5677866 567765 2333322    234  3567899999975  8999999983

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=96.87  E-value=0.0024  Score=56.75  Aligned_cols=67  Identities=19%  Similarity=0.236  Sum_probs=48.0

Q ss_pred             CeEEEEc-cChHHHH-HH----HHhccCC-CEE----------EEEcCCCCChh-HHHhcCc-eecCCHHhhcCc--CCE
Q 026360           37 KTVGTVG-CGRIGKL-LL----QRLKPFN-CNL----------LYHDRVKMDPQ-LEKETGA-KFEEDLDTMLPK--CDI   95 (240)
Q Consensus        37 ~~vgIIG-~G~iG~~-~A----~~l~~~G-~~V----------~~~d~~~~~~~-~~~~~g~-~~~~~l~ell~~--aDi   95 (240)
                      .+||||| +|.||+. .+    ..++..+ ..+          .++|+++...+ .++..|+ ..+.++++++++  .|+
T Consensus         7 irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~   86 (383)
T 3oqb_A            7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKNDTM   86 (383)
T ss_dssp             EEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSSCCE
T ss_pred             eEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCE
Confidence            5899999 9999998 66    6665443 222          37888764433 3445677 356799999965  899


Q ss_pred             EEEcCCCC
Q 026360           96 VVVNTPLT  103 (240)
Q Consensus        96 Vvl~lp~~  103 (240)
                      |++++|..
T Consensus        87 V~i~tp~~   94 (383)
T 3oqb_A           87 FFDAATTQ   94 (383)
T ss_dssp             EEECSCSS
T ss_pred             EEECCCch
Confidence            99999853

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=96.87  E-value=0.0013  Score=58.26  Aligned_cols=68  Identities=21%  Similarity=0.265  Sum_probs=49.4

Q ss_pred             cCCCeEEEEcc-ChHHHHHHHHhccCCC--EEEEEcCCCCChhH----HHh-----cCceecCCHHhhcCcCCEEEEcCC
Q 026360           34 LEGKTVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVKMDPQL----EKE-----TGAKFEEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        34 l~g~~vgIIG~-G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~~----~~~-----~g~~~~~~l~ell~~aDiVvl~lp  101 (240)
                      +.++||+|||. |.+|..+|..+...|.  +|..+|......+.    ...     ..+....+..+.+++||+|+++..
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG   85 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGG   85 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccC
Confidence            45789999998 9999999988887774  79999985422111    111     123334578888999999999863

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=96.86  E-value=0.00059  Score=60.20  Aligned_cols=67  Identities=22%  Similarity=0.226  Sum_probs=47.9

Q ss_pred             CeEEEEccChHHHHHHHHhccC--------CCEEE-EEcCCCCChh-HHHhcCc-eecCCHHhhcCc--CCEEEEcCCCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPF--------NCNLL-YHDRVKMDPQ-LEKETGA-KFEEDLDTMLPK--CDIVVVNTPLT  103 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~--------G~~V~-~~d~~~~~~~-~~~~~g~-~~~~~l~ell~~--aDiVvl~lp~~  103 (240)
                      -+|||||+|.||+..+..++..        +.+|. ++|+++...+ .++.+|+ ..++++++++++  .|+|++++|..
T Consensus         7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~tP~~   86 (390)
T 4h3v_A            7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCTPGD   86 (390)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECSCGG
T ss_pred             CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChH
Confidence            4899999999999888776542        23544 6677653333 3445675 456799999964  79999999954

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=96.86  E-value=0.00058  Score=59.69  Aligned_cols=88  Identities=25%  Similarity=0.218  Sum_probs=62.0

Q ss_pred             CCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHH-hcCceec------CCHHhhc-----CcCCEEEEcCC
Q 026360           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFE------EDLDTML-----PKCDIVVVNTP  101 (240)
Q Consensus        35 ~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~~~------~~l~ell-----~~aDiVvl~lp  101 (240)
                      .|++|.|+|. |.+|..+++.++..|++|++.++++...+.++ ++|....      .++.+.+     ...|+++.++.
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g  234 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVG  234 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCCcEEEECCC
Confidence            5899999997 99999999999999999999998654455555 4665321      1232222     24788887775


Q ss_pred             CChhhhhcccHHHHccCCCCCEEEEcC
Q 026360          102 LTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       102 ~~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      . +     .....++.++++..++.++
T Consensus       235 ~-~-----~~~~~~~~l~~~G~~v~~G  255 (345)
T 2j3h_A          235 G-K-----MLDAVLVNMNMHGRIAVCG  255 (345)
T ss_dssp             H-H-----HHHHHHTTEEEEEEEEECC
T ss_pred             H-H-----HHHHHHHHHhcCCEEEEEc
Confidence            2 1     2245667788888888876

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=96.86  E-value=0.00057  Score=60.48  Aligned_cols=89  Identities=18%  Similarity=0.176  Sum_probs=64.0

Q ss_pred             CCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-----CCHHhhc-----CcCCEEEEcCCCC
Q 026360           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML-----PKCDIVVVNTPLT  103 (240)
Q Consensus        35 ~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell-----~~aDiVvl~lp~~  103 (240)
                      .|++|.|+| .|.+|..+++.++..|++|++.++++...+.++++|+..+     .++.+.+     ...|+|+.++.. 
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~-  241 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESVGG-  241 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEEEECSCT-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEEEECCCH-
Confidence            589999999 7999999999999999999999987555566666775421     1232322     247888888762 


Q ss_pred             hhhhhcccHHHHccCCCCCEEEEcCC
Q 026360          104 EKTRGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       104 ~~t~~~i~~~~l~~mk~gailIN~sr  129 (240)
                      +     .....++.++++..+|.++.
T Consensus       242 ~-----~~~~~~~~l~~~G~iv~~g~  262 (362)
T 2c0c_A          242 A-----MFDLAVDALATKGRLIVIGF  262 (362)
T ss_dssp             H-----HHHHHHHHEEEEEEEEECCC
T ss_pred             H-----HHHHHHHHHhcCCEEEEEeC
Confidence            1     12356677888888888774

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=96.85  E-value=0.0013  Score=56.96  Aligned_cols=106  Identities=13%  Similarity=0.109  Sum_probs=68.3

Q ss_pred             CCeEEEEcc-ChHHHHHHHHhccCCCE-EEEEcCCCCChhHHHhcCceecCCHHhhcC--cCCEEEEcCCCChhhhhccc
Q 026360           36 GKTVGTVGC-GRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        36 g~~vgIIG~-G~iG~~~A~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDiVvl~lp~~~~t~~~i~  111 (240)
                      ..++.|+|. |++|+.+++.+...|++ |..+++.....+   -.|+..+.+++++.+  ..|++++++|. +.....+ 
T Consensus        13 ~~~v~V~Gasg~~G~~~~~~l~~~g~~~V~~VnP~~~g~~---i~G~~vy~sl~el~~~~~~Dv~ii~vp~-~~~~~~v-   87 (294)
T 2yv1_A           13 NTKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQN---VHGVPVFDTVKEAVKETDANASVIFVPA-PFAKDAV-   87 (294)
T ss_dssp             TCCEEEETTTSHHHHHHHHHHHHTTCCEEEEECTTCTTCE---ETTEEEESSHHHHHHHHCCCEEEECCCH-HHHHHHH-
T ss_pred             CCEEEEECCCCCHHHHHHHHHHhCCCeEEEEeCCCCCCce---ECCEeeeCCHHHHhhcCCCCEEEEccCH-HHHHHHH-
Confidence            346788898 99999999999988998 335554321111   247777789999988  89999999992 2222222 


Q ss_pred             HHHHccCCCCCEEEEcCCCc-ccCHHHHHHHHHhCCcc
Q 026360          112 KDRIAKMKKGVLIVNNARGA-IMDTQAVVDACSSGHIA  148 (240)
Q Consensus       112 ~~~l~~mk~gailIN~srg~-~vd~~aL~~aL~~g~i~  148 (240)
                      .+..+ .+... +|..+.|- .-+++.+.++.++..+.
T Consensus        88 ~ea~~-~Gi~~-vVi~t~G~~~~~~~~l~~~A~~~gi~  123 (294)
T 2yv1_A           88 FEAID-AGIEL-IVVITEHIPVHDTMEFVNYAEDVGVK  123 (294)
T ss_dssp             HHHHH-TTCSE-EEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred             HHHHH-CCCCE-EEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            23332 22222 44455442 23456888888887665

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=96.84  E-value=0.0011  Score=60.91  Aligned_cols=68  Identities=18%  Similarity=0.203  Sum_probs=46.9

Q ss_pred             CCeEEEEccChH-HHHHHHHhcc----C-CCEEEEEcCCC--CChhH----H----HhcC----ceecCCHHhhcCcCCE
Q 026360           36 GKTVGTVGCGRI-GKLLLQRLKP----F-NCNLLYHDRVK--MDPQL----E----KETG----AKFEEDLDTMLPKCDI   95 (240)
Q Consensus        36 g~~vgIIG~G~i-G~~~A~~l~~----~-G~~V~~~d~~~--~~~~~----~----~~~g----~~~~~~l~ell~~aDi   95 (240)
                      .++|+|||.|.+ |..++..|..    + +.+|..||+++  ...+.    .    ...+    +....++++.+++||+
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD~   86 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADF   86 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCCCE
Confidence            468999999999 8877655544    3 56799999865  32111    1    1111    2233588889999999


Q ss_pred             EEEcCCCC
Q 026360           96 VVVNTPLT  103 (240)
Q Consensus        96 Vvl~lp~~  103 (240)
                      |++++|..
T Consensus        87 VVitagv~   94 (450)
T 1s6y_A           87 VTTQFRVG   94 (450)
T ss_dssp             EEECCCTT
T ss_pred             EEEcCCCC
Confidence            99999853

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=96.84  E-value=0.0042  Score=56.80  Aligned_cols=110  Identities=19%  Similarity=0.239  Sum_probs=67.7

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCCEEE-EEcCC-------CCChhHH------Hh-------------cCceec
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLL-YHDRV-------KMDPQLE------KE-------------TGAKFE   83 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~-~~d~~-------~~~~~~~------~~-------------~g~~~~   83 (240)
                      +.+++|++|.|-|+|++|...|+.|...|++|+ +.|.+       ..+.+..      ++             .+.+.+
T Consensus       234 g~~l~g~~VaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~iyd~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~~~a~~v  313 (456)
T 3r3j_A          234 NDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSDSNGYILEPNGFTKEQLNYIMDIKNNQRLRLKEYLKYSKTAKYF  313 (456)
T ss_dssp             TCCSTTCCEEEECCSHHHHHHHHHHHHHTCCBCCEECSSCEEECTTCCCHHHHHHHHHHHHTSCCCGGGGGGTCSSCEEE
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHHHhcCcchhhhhhcCCCceEe
Confidence            457899999999999999999999999999976 44532       2221111      10             122333


Q ss_pred             CCHHhhc-CcCCEEEEcCCCChhhhhcccHHHHccCC--CCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360           84 EDLDTML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMK--KGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus        84 ~~l~ell-~~aDiVvl~lp~~~~t~~~i~~~~l~~mk--~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                       +.++++ ..||+++-|.-     .+.|+.+....+.  .=.+|+-.+.+++ ..++ .+.|.+..|.
T Consensus       314 -~~~~i~~~~~DI~iPcA~-----~~~I~~~na~~l~~~~ak~V~EgAN~p~-T~eA-~~iL~~rGI~  373 (456)
T 3r3j_A          314 -ENQKPWNIPCDIAFPCAT-----QNEINENDADLFIQNKCKMIVEGANMPT-HIKA-LHKLKQNNII  373 (456)
T ss_dssp             -CSCCGGGSCCSEEEECSC-----TTCBCHHHHHHHHHHTCCEEECCSSSCB-CTTH-HHHHHTTTCE
T ss_pred             -CCccccccCccEEEeCCC-----ccchhhHHHHHHHhcCCeEEEecCCCCC-CHHH-HHHHHHCCCE
Confidence             223333 45898888763     5677777666662  2245556666664 3333 3566665554

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=96.83  E-value=0.0033  Score=58.09  Aligned_cols=99  Identities=12%  Similarity=0.206  Sum_probs=69.1

Q ss_pred             cccCCCeEEEEccC----------hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCC
Q 026360           32 YDLEGKTVGTVGCG----------RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        32 ~~l~g~~vgIIG~G----------~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp  101 (240)
                      ..+.|++|+|+|+-          .-...+++.|...|.+|.+|||.-..   ..  +.....++++.++.+|+|+++++
T Consensus       349 ~~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~---~~--~~~~~~~~~~~~~~ad~vvi~t~  423 (478)
T 3g79_A          349 KKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVN---YP--GVEISDNLEEVVRNADAIVVLAG  423 (478)
T ss_dssp             CCSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCC---BT--TBCEESCHHHHHTTCSEEEECSC
T ss_pred             cCCCCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCccc---cc--CcceecCHHHHHhcCCEEEEecC
Confidence            46899999999963          24678899999999999999986431   11  23345689999999999999987


Q ss_pred             CChhhhhcccHHHHccCC-CCCEEEEcCCCcccCHHHH
Q 026360          102 LTEKTRGMFDKDRIAKMK-KGVLIVNNARGAIMDTQAV  138 (240)
Q Consensus       102 ~~~~t~~~i~~~~l~~mk-~gailIN~srg~~vd~~aL  138 (240)
                      - ++.+.+=-....+.|+ +..+|+|+ |+- .|.+.+
T Consensus       424 ~-~~f~~~d~~~~~~~~~~~~~~i~D~-rn~-~~~~~~  458 (478)
T 3g79_A          424 H-SAYSSLKADWAKKVSAKANPVIIDG-RNV-IEPDEF  458 (478)
T ss_dssp             C-HHHHSCCHHHHHHHHCCSSCEEEES-SSC-SCHHHH
T ss_pred             C-HHHHhhhHHHHHHHhccCCCEEEEC-CCC-CCHHHH
Confidence            3 3333332233445577 47899995 553 454443

>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*

Probab=96.83  E-value=0.0085  Score=52.52  Aligned_cols=93  Identities=5%  Similarity=-0.019  Sum_probs=66.6

Q ss_pred             cCCCeEEE-----EccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCC--h--
Q 026360           34 LEGKTVGT-----VGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLT--E--  104 (240)
Q Consensus        34 l~g~~vgI-----IG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~--~--  104 (240)
                      +. .+|++     +|=+++.++++..+..+|++|.+..|.....+.....++....+++++++++|+|..-.-..  .  
T Consensus       167 l~-l~ia~a~~~~vGD~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~w~s~g~~~  245 (324)
T 1js1_X          167 PK-VVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDN  245 (324)
T ss_dssp             CE-EEEECCCCSSCCCSHHHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEECCCCCCSTTC
T ss_pred             ee-EEEEEEcccccCCcchHHHHHHHHHHCCCEEEEeCCcccCCChhhccceEEECCHHHHhCCCCEEEecCcccCCCcc
Confidence            55 79999     99999999999999999999999998654332222235666789999999999998843211  0  


Q ss_pred             -------hhhhcccHHHHccCCCCCEEEEcC
Q 026360          105 -------KTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       105 -------~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                             .....++.+.++.+| +++|..+.
T Consensus       246 ~~~~~~r~~~y~vt~e~l~~a~-~ai~MHcL  275 (324)
T 1js1_X          246 YGQILSTDRNWTVGDRQMAVTN-NAYFMHCL  275 (324)
T ss_dssp             TTCCCCCCTTSSBCHHHHTTSS-SCEEECCS
T ss_pred             ccchHHHhcCcccCHHHHHhcC-CcEEECCC
Confidence                   012345666776666 66666553

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.82  E-value=0.0014  Score=56.25  Aligned_cols=90  Identities=19%  Similarity=0.309  Sum_probs=57.2

Q ss_pred             CCeEEEEc-cChHHHHHHHHhcc-CCCEEEE-EcCCCCChh--HHH-----hcCceecCCHHhhcCcCCEEEEcCCCChh
Q 026360           36 GKTVGTVG-CGRIGKLLLQRLKP-FNCNLLY-HDRVKMDPQ--LEK-----ETGAKFEEDLDTMLPKCDIVVVNTPLTEK  105 (240)
Q Consensus        36 g~~vgIIG-~G~iG~~~A~~l~~-~G~~V~~-~d~~~~~~~--~~~-----~~g~~~~~~l~ell~~aDiVvl~lp~~~~  105 (240)
                      -.+|+|+| +|.||+.+++.+.. -++++.+ +|++.....  ...     ..|+...++++++++++|+|+-+++  |+
T Consensus         7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDfT~--p~   84 (272)
T 4f3y_A            7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTL--PE   84 (272)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEECSC--HH
T ss_pred             ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEcCC--HH
Confidence            46899999 89999999998864 4788665 677532110  000     1155556799999999999998876  33


Q ss_pred             hhhcccHHHHccCCCCCEEEEcCCC
Q 026360          106 TRGMFDKDRIAKMKKGVLIVNNARG  130 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailIN~srg  130 (240)
                      ...-   .....++.|.-+|-...|
T Consensus        85 a~~~---~~~~al~~G~~vVigTTG  106 (272)
T 4f3y_A           85 GTLV---HLDAALRHDVKLVIGTTG  106 (272)
T ss_dssp             HHHH---HHHHHHHHTCEEEECCCC
T ss_pred             HHHH---HHHHHHHcCCCEEEECCC
Confidence            2111   111223455556655556

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=96.82  E-value=0.00076  Score=60.09  Aligned_cols=89  Identities=17%  Similarity=0.221  Sum_probs=63.8

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCC-CEEEEEcCCCCChhHHHhcCceec-C-C---HH-------hhcC--cCCEEEEc
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFE-E-D---LD-------TMLP--KCDIVVVN   99 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G-~~V~~~d~~~~~~~~~~~~g~~~~-~-~---l~-------ell~--~aDiVvl~   99 (240)
                      .|.+|.|+|.|.+|...++.++..| .+|++.++++...+.++++|+..+ + +   -+       ++..  ..|+|+-+
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~~g~g~Dvvid~  274 (380)
T 1vj0_A          195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEA  274 (380)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEEC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCcEEEeccccCcchHHHHHHHHhCCCCCcEEEEC
Confidence            4889999999999999999999999 599999987666666777776421 1 1   11       1111  47888888


Q ss_pred             CCCChhhhhcccHHHHccCCCCCEEEEcC
Q 026360          100 TPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       100 lp~~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      +...+.     ....++.++++..+|.++
T Consensus       275 ~g~~~~-----~~~~~~~l~~~G~iv~~G  298 (380)
T 1vj0_A          275 TGDSRA-----LLEGSELLRRGGFYSVAG  298 (380)
T ss_dssp             SSCTTH-----HHHHHHHEEEEEEEEECC
T ss_pred             CCCHHH-----HHHHHHHHhcCCEEEEEe
Confidence            763221     234566778888888876

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.80  E-value=0.0011  Score=60.93  Aligned_cols=69  Identities=17%  Similarity=0.187  Sum_probs=50.6

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH-hcCceec----CC---HHhh-cCcCCEEEEcCCCCh
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFE----ED---LDTM-LPKCDIVVVNTPLTE  104 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~~~----~~---l~el-l~~aDiVvl~lp~~~  104 (240)
                      .++|-|+|+|.+|+.+|+.|...|++|++.|.++...+... .+++..+    .+   |+++ +++||+++.+++.++
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~De   80 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNTDE   80 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSCHH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCChH
Confidence            57899999999999999999999999999998764443333 3454322    22   3332 688999988877543

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.80  E-value=0.0011  Score=56.07  Aligned_cols=93  Identities=18%  Similarity=0.207  Sum_probs=62.1

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCC-------------------hhHH----Hhc--Cc--eec
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMD-------------------PQLE----KET--GA--KFE   83 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~-------------------~~~~----~~~--g~--~~~   83 (240)
                      ..|++++|.|+|+|.+|..+++.|...|. ++.++|.+...                   .+.+    .+.  ++  ...
T Consensus        24 ~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~  103 (251)
T 1zud_1           24 QKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTAL  103 (251)
T ss_dssp             HHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred             HHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEE
Confidence            36899999999999999999999999997 68888764311                   1111    111  11  111


Q ss_pred             ------CCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcC
Q 026360           84 ------EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus        84 ------~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                            ++++++++++|+|+.++. +.+++..+++...+.   +..+|+.+
T Consensus       104 ~~~~~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~---~~p~i~~~  150 (251)
T 1zud_1          104 QQRLTGEALKDAVARADVVLDCTD-NMATRQEINAACVAL---NTPLITAS  150 (251)
T ss_dssp             CSCCCHHHHHHHHHHCSEEEECCS-SHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred             eccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHHh---CCCEEEEe
Confidence                  134567888999998886 566777777655442   34466654

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=96.79  E-value=0.00061  Score=59.71  Aligned_cols=88  Identities=16%  Similarity=0.141  Sum_probs=59.9

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCcee-c----CCHHhhc-----CcCCEEEEcCCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKF-E----EDLDTML-----PKCDIVVVNTPLT  103 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~-~----~~l~ell-----~~aDiVvl~lp~~  103 (240)
                      .|.+|.|+|.|.+|..+++.++..|+ +|++.++++...+.++++ ... .    .++.+.+     ...|+|+-++...
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~~~~~~~~~~~~~~~~g~D~vid~~g~~  242 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADRLVNPLEEDLLEVVRRVTGSGVEVLLEFSGNE  242 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSEEECTTTSCHHHHHHHHHSSCEEEEEECSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHhccCcCccCHHHHHHHhcCCCCCEEEECCCCH
Confidence            78999999999999999999999999 899999865443444333 221 1    1232222     2478888877632


Q ss_pred             hhhhhcccHHHHccCCCCCEEEEcC
Q 026360          104 EKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       104 ~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      +.     ....++.++++..++.++
T Consensus       243 ~~-----~~~~~~~l~~~G~iv~~g  262 (343)
T 2dq4_A          243 AA-----IHQGLMALIPGGEARILG  262 (343)
T ss_dssp             HH-----HHHHHHHEEEEEEEEECC
T ss_pred             HH-----HHHHHHHHhcCCEEEEEe
Confidence            11     234566678888888876

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=96.79  E-value=0.0042  Score=55.03  Aligned_cols=92  Identities=20%  Similarity=0.218  Sum_probs=66.4

Q ss_pred             CCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-----CCHHhhc---CcCCEEEEcCCCChh
Q 026360           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML---PKCDIVVVNTPLTEK  105 (240)
Q Consensus        35 ~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell---~~aDiVvl~lp~~~~  105 (240)
                      .|++|.|+| .|.+|..+++.++..|++|++.++ +...+.++++|+..+     .++.+.+   ...|+++-++.....
T Consensus       183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~-~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~g~D~vid~~g~~~~  261 (375)
T 2vn8_A          183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCS-QDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFILDNVGGSTE  261 (375)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC-GGGHHHHHHTTCSEEEETTSSCHHHHHHTSCCBSEEEESSCTTHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeC-hHHHHHHHHcCCCEEEECCchHHHHHHhhcCCCCEEEECCCChhh
Confidence            589999999 799999999999999999988874 445666777776421     1232222   358999999873311


Q ss_pred             hhhcccHHHHccCCCCCEEEEcCCCc
Q 026360          106 TRGMFDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailIN~srg~  131 (240)
                      +    -...+..++++..+|.++...
T Consensus       262 ~----~~~~~~~l~~~G~iv~~g~~~  283 (375)
T 2vn8_A          262 T----WAPDFLKKWSGATYVTLVTPF  283 (375)
T ss_dssp             H----HGGGGBCSSSCCEEEESCCSH
T ss_pred             h----hHHHHHhhcCCcEEEEeCCCc
Confidence            1    134567789999999998643

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=96.78  E-value=0.0024  Score=56.57  Aligned_cols=88  Identities=22%  Similarity=0.222  Sum_probs=52.2

Q ss_pred             CeEEEEc-cChHHHHHHHHhccCC-CEEEEEc--CCCCChhHHHhcC-------------cee-cCCHHhhcC-cCCEEE
Q 026360           37 KTVGTVG-CGRIGKLLLQRLKPFN-CNLLYHD--RVKMDPQLEKETG-------------AKF-EEDLDTMLP-KCDIVV   97 (240)
Q Consensus        37 ~~vgIIG-~G~iG~~~A~~l~~~G-~~V~~~d--~~~~~~~~~~~~g-------------~~~-~~~l~ell~-~aDiVv   97 (240)
                      .+|||+| .|.+|+.+++.|.... ++|.++.  +...........+             ... ..+.+++++ ++|+|+
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~   88 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDIVF   88 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTTCCEEE
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCCCCEEE
Confidence            5899999 8999999999998654 5776664  2221111111111             111 124556556 899999


Q ss_pred             EcCCCChhhhhcccHHHHccCCCCCEEEEcCC
Q 026360           98 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus        98 l~lp~~~~t~~~i~~~~l~~mk~gailIN~sr  129 (240)
                      +|+|... +.... ...   ++.|..+|+.+.
T Consensus        89 ~atp~~~-~~~~a-~~~---~~aG~~VId~s~  115 (354)
T 1ys4_A           89 SALPSDL-AKKFE-PEF---AKEGKLIFSNAS  115 (354)
T ss_dssp             ECCCHHH-HHHHH-HHH---HHTTCEEEECCS
T ss_pred             ECCCchH-HHHHH-HHH---HHCCCEEEECCc
Confidence            9999322 11111 122   346778888874

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=96.78  E-value=0.00062  Score=61.00  Aligned_cols=94  Identities=14%  Similarity=0.118  Sum_probs=65.9

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceec----CCH-Hhhc----C--cCCEEEEcCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE----EDL-DTML----P--KCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~----~~l-~ell----~--~aDiVvl~lp~  102 (240)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++...+.++++|+..+    .++ .+.+    .  ..|+|+-++..
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~~~~~~~g~g~Dvvid~~g~  264 (398)
T 2dph_A          185 PGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFETIDLRNSAPLRDQIDQILGKPEVDCGVDAVGF  264 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECSCT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEcCCCcchHHHHHHHHhCCCCCCEEEECCCC
Confidence            58899999999999999999999999 89999987656667777776422    121 2211    1  47999888863


Q ss_pred             Chh----------hhhcccHHHHccCCCCCEEEEcCC
Q 026360          103 TEK----------TRGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       103 ~~~----------t~~~i~~~~l~~mk~gailIN~sr  129 (240)
                      ...          ... .-.+.++.++++..++.++-
T Consensus       265 ~~~~~~~~~~~~~~~~-~~~~~~~~l~~gG~iv~~G~  300 (398)
T 2dph_A          265 EAHGLGDEANTETPNG-ALNSLFDVVRAGGAIGIPGI  300 (398)
T ss_dssp             TCBCSGGGTTSBCTTH-HHHHHHHHEEEEEEEECCSC
T ss_pred             ccccccccccccccHH-HHHHHHHHHhcCCEEEEecc
Confidence            210          000 12356677888888888763

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=96.76  E-value=0.003  Score=55.39  Aligned_cols=87  Identities=17%  Similarity=0.109  Sum_probs=64.4

Q ss_pred             CCeEEEE-ccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-----CCHHhhc------CcCCEEEEcCCCC
Q 026360           36 GKTVGTV-GCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML------PKCDIVVVNTPLT  103 (240)
Q Consensus        36 g~~vgII-G~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell------~~aDiVvl~lp~~  103 (240)
                      ++++.|. |.|.+|..+++.++..|++|++.++++.+.+.++++|+..+     .++.+.+      ...|+++-++.. 
T Consensus       165 ~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~~~g~D~vid~~g~-  243 (349)
T 3pi7_A          165 EKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGAAHVLNEKAPDFEATLREVMKAEQPRIFLDAVTG-  243 (349)
T ss_dssp             CSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHTCSEEEETTSTTHHHHHHHHHHHHCCCEEEESSCH-
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCcHHHHHHHHHHhcCCCCcEEEECCCC-
Confidence            3677665 89999999999999999999999987767777777776421     2232222      258999988862 


Q ss_pred             hhhhhcccHHHHccCCCCCEEEEcC
Q 026360          104 EKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       104 ~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      +.    . ...+..++++..+|.++
T Consensus       244 ~~----~-~~~~~~l~~~G~iv~~G  263 (349)
T 3pi7_A          244 PL----A-SAIFNAMPKRARWIIYG  263 (349)
T ss_dssp             HH----H-HHHHHHSCTTCEEEECC
T ss_pred             hh----H-HHHHhhhcCCCEEEEEe
Confidence            11    1 46778899999999987

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=96.74  E-value=0.0023  Score=54.91  Aligned_cols=39  Identities=10%  Similarity=0.065  Sum_probs=35.0

Q ss_pred             ccccCCCeEEEEccC---hHHHHHHHHhccCCCEEEEEcCCC
Q 026360           31 AYDLEGKTVGTVGCG---RIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G---~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      ...+.||++.|.|.+   .||+.+|+.|.+.|++|++.+++.
T Consensus        25 ~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~   66 (296)
T 3k31_A           25 GMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSE   66 (296)
T ss_dssp             CCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             hhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCCh
Confidence            356899999999985   899999999999999999999875

>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}

Probab=96.74  E-value=0.0073  Score=54.43  Aligned_cols=67  Identities=16%  Similarity=0.311  Sum_probs=51.9

Q ss_pred             cCCCeEEEEcc-----C---hHHHHHHHHhccCCCEEEEEcCCCC--ChhHH-------HhcCc--eecCCHHhhcCcCC
Q 026360           34 LEGKTVGTVGC-----G---RIGKLLLQRLKPFNCNLLYHDRVKM--DPQLE-------KETGA--KFEEDLDTMLPKCD   94 (240)
Q Consensus        34 l~g~~vgIIG~-----G---~iG~~~A~~l~~~G~~V~~~d~~~~--~~~~~-------~~~g~--~~~~~l~ell~~aD   94 (240)
                      |.|++|+|+|-     |   ++.++++..+..+|++|.+..|...  .++..       +..|.  ....++++.++++|
T Consensus       189 l~Glkva~vgd~~~~~G~~nnVa~Sli~~~~~lG~~v~~~~P~~~~~~~~~~~~a~~~a~~~G~~i~~~~d~~eav~~aD  268 (399)
T 3q98_A          189 LKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLIPDVVEVAKNNAKASGGSFRQVTSMEEAFKDAD  268 (399)
T ss_dssp             GTTCEEEEECCCCSSCCCCTHHHHHHHHHHGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCS
T ss_pred             cCCCEEEEEEecccccCcchHHHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEEcCHHHHhCCCC
Confidence            78999999973     4   7999999999999999999998632  22222       23353  45679999999999


Q ss_pred             EEEEcC
Q 026360           95 IVVVNT  100 (240)
Q Consensus        95 iVvl~l  100 (240)
                      +|..-+
T Consensus       269 vVytd~  274 (399)
T 3q98_A          269 IVYPKS  274 (399)
T ss_dssp             EEEECC
T ss_pred             EEEecC
Confidence            998864

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=96.73  E-value=0.0031  Score=55.46  Aligned_cols=111  Identities=10%  Similarity=0.135  Sum_probs=69.6

Q ss_pred             CeEEEEccChHHHHHHHHhcc---------CCCEEEE-EcCCCCCh-----h-HHH-hc-CceecC--CHHhhcC--cCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKP---------FNCNLLY-HDRVKMDP-----Q-LEK-ET-GAKFEE--DLDTMLP--KCD   94 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~---------~G~~V~~-~d~~~~~~-----~-~~~-~~-g~~~~~--~l~ell~--~aD   94 (240)
                      .+|||||+|.||+.+++.+..         .+.+|.+ +|+++...     . ... .. .....+  +++++++  +.|
T Consensus         3 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~iD   82 (327)
T 3do5_A            3 IKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADYD   82 (327)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSCCS
T ss_pred             EEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCCCC
Confidence            489999999999999998875         4667654 45543211     1 111 11 112233  8899885  589


Q ss_pred             EEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCccc-CHHHHHHHHHhCCcc
Q 026360           95 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIA  148 (240)
Q Consensus        95 iVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~v-d~~aL~~aL~~g~i~  148 (240)
                      +|+.++|....... ...-....++.|.-+|....+.+. +-+.|.++.++.+..
T Consensus        83 vVv~~tp~~~h~~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~  136 (327)
T 3do5_A           83 VLIEASVTRVDGGE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVR  136 (327)
T ss_dssp             EEEECCCCC----C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCC
T ss_pred             EEEECCCCcccchh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCc
Confidence            99999995432111 122345567888888877555553 566788888777765

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=96.72  E-value=0.0013  Score=58.09  Aligned_cols=67  Identities=22%  Similarity=0.289  Sum_probs=44.0

Q ss_pred             CeEEEEccChHHHHHHHHhcc-CCCEEEEE-cCCCCChh-HHHhc------------------CceecCCHHhhcCcCCE
Q 026360           37 KTVGTVGCGRIGKLLLQRLKP-FNCNLLYH-DRVKMDPQ-LEKET------------------GAKFEEDLDTMLPKCDI   95 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~-~G~~V~~~-d~~~~~~~-~~~~~------------------g~~~~~~l~ell~~aDi   95 (240)
                      .+|||+|+|.||+.+++.|.. -++++.+. |+++.... .+...                  ++....+.++++.++|+
T Consensus         2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDv   81 (337)
T 1cf2_P            2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (337)
T ss_dssp             EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCE
Confidence            379999999999999999876 46776554 55422111 11111                  11111256677788999


Q ss_pred             EEEcCCCC
Q 026360           96 VVVNTPLT  103 (240)
Q Consensus        96 Vvl~lp~~  103 (240)
                      |+.|+|..
T Consensus        82 V~~atp~~   89 (337)
T 1cf2_P           82 VIDCTPEG   89 (337)
T ss_dssp             EEECCSTT
T ss_pred             EEECCCch
Confidence            99999854

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=96.71  E-value=0.0025  Score=58.37  Aligned_cols=111  Identities=15%  Similarity=0.217  Sum_probs=65.8

Q ss_pred             CeEEEEccChHHHHHHHHhccC-CCEEE-EEcCCCCChhHH-Hhc-C----------------------ceecCCHHhhc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQLE-KET-G----------------------AKFEEDLDTML   90 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~-G~~V~-~~d~~~~~~~~~-~~~-g----------------------~~~~~~l~ell   90 (240)
                      .+|||||+|.||+.++..+... +++|. ++|+++.....+ ... |                      ...++++++++
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeLL  103 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLIL  103 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHHH
T ss_pred             eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHHh
Confidence            5899999999999999888754 67754 557765333222 222 3                      33567999999


Q ss_pred             C--cCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCc-ccCHHHHHHHHHhCCccEEE
Q 026360           91 P--KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGA-IMDTQAVVDACSSGHIAGYS  151 (240)
Q Consensus        91 ~--~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~-~vd~~aL~~aL~~g~i~ga~  151 (240)
                      +  +.|+|+.++|... ...   .-.+..++.|.-++...-+- ...-+.|.++.++.++....
T Consensus       104 ~d~dIDaVviaTp~p~-~H~---e~a~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvvl~~  163 (446)
T 3upl_A          104 SNPLIDVIIDATGIPE-VGA---ETGIAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVIYSL  163 (446)
T ss_dssp             TCTTCCEEEECSCCHH-HHH---HHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             cCCCCCEEEEcCCChH-HHH---HHHHHHHHcCCcEEecCcccCHHHHHHHHHHHHHhCCeeee
Confidence            7  4899999998432 111   11233345555555322111 12235666666665555333

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=96.71  E-value=0.0081  Score=55.39  Aligned_cols=97  Identities=19%  Similarity=0.180  Sum_probs=67.9

Q ss_pred             ccCCCeEEEEccC----------hHHHHHHHHhccCCCEEEEEcCCCCChhHH-Hhc------------CceecCCHHhh
Q 026360           33 DLEGKTVGTVGCG----------RIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KET------------GAKFEEDLDTM   89 (240)
Q Consensus        33 ~l~g~~vgIIG~G----------~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~-~~~------------g~~~~~~l~el   89 (240)
                      .+.|++|+|+|+-          .-...+++.|...|.+|.+|||..  .+.. ..+            .+..+.++++.
T Consensus       325 ~~~~~~v~vlGlafK~~~dD~R~Sp~~~i~~~L~~~g~~v~~~DP~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (478)
T 2y0c_A          325 DLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLSRGARIAAYDPVA--QEEARRVIALDLADHPSWLERLSFVDDEAQA  402 (478)
T ss_dssp             CCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECTTT--HHHHHHHHHHHTTTCHHHHTTEEECSSHHHH
T ss_pred             cCCCCEEEEEecccCCCCCccccChHHHHHHHHHHCCCEEEEECCCc--cHHHHHhhccccccccccccceeecCCHHHH
Confidence            5899999999962          366788999999999999999863  2222 112            25566788999


Q ss_pred             cCcCCEEEEcCCCChhhhhcccHH-HHccCCCCCEEEEcCCCcccCHH
Q 026360           90 LPKCDIVVVNTPLTEKTRGMFDKD-RIAKMKKGVLIVNNARGAIMDTQ  136 (240)
Q Consensus        90 l~~aDiVvl~lp~~~~t~~~i~~~-~l~~mk~gailIN~srg~~vd~~  136 (240)
                      ++++|+|++++.-. +.+. ++-+ ..+.|+ ..+|+|+ |+ +.+.+
T Consensus       403 ~~~ad~~vi~t~~~-~f~~-~~~~~~~~~~~-~~~i~D~-r~-~~~~~  445 (478)
T 2y0c_A          403 ARDADALVIVTEWK-IFKS-PDFVALGRLWK-TPVIFDG-RN-LYEPE  445 (478)
T ss_dssp             TTTCSEEEECSCCG-GGGS-CCHHHHHTTCS-SCEEEES-SC-CSCHH
T ss_pred             HhCCCEEEEecCCh-Hhhc-cCHHHHHhhcC-CCEEEEC-CC-CCCHH
Confidence            99999999998743 3333 3444 344555 4788887 44 34544

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=96.69  E-value=0.0027  Score=52.02  Aligned_cols=70  Identities=19%  Similarity=0.223  Sum_probs=51.1

Q ss_pred             cCCCeEEEEc-cChHHHHHHHHhccCCC--EEEEEcCCCCChhHHHhcCc-------eecCCHHhhcCcCCEEEEcCCCC
Q 026360           34 LEGKTVGTVG-CGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGA-------KFEEDLDTMLPKCDIVVVNTPLT  103 (240)
Q Consensus        34 l~g~~vgIIG-~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~g~-------~~~~~l~ell~~aDiVvl~lp~~  103 (240)
                      +.++++.|.| .|.||+.+++.|...|+  +|++.+|++.........++       ...++++++++..|+|+.+....
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~~   95 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT   95 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCCcc
Confidence            5789999999 69999999999999999  99999987543221111112       11235567788899999988654

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.68  E-value=0.005  Score=53.04  Aligned_cols=108  Identities=10%  Similarity=0.118  Sum_probs=76.0

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCCh---------
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTE---------  104 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~---------  104 (240)
                      +.|++|.++|........++.|...|++|.......   +.....|.....++.+.++++|+|+...|...         
T Consensus         5 ~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~---~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~   81 (300)
T 2rir_A            5 LTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQ---LDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVF   81 (300)
T ss_dssp             CCSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTT---SSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSS
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeccc---cccccccceeccchHHHHhcCCEEEeccccccCCccccccc
Confidence            678999999999999999999999999998774321   11112344445567788889999987444221         


Q ss_pred             -hhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccE
Q 026360          105 -KTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAG  149 (240)
Q Consensus       105 -~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~g  149 (240)
                       .+...++++.++.+++..+++ ++    +|..++.+++.+.++.-
T Consensus        82 a~~~~~~~~~~l~~~~~l~~i~-~g----~~~~d~~~~~~~~gi~v  122 (300)
T 2rir_A           82 SNEEVVLKQDHLDRTPAHCVIF-SG----ISNAYLENIAAQAKRKL  122 (300)
T ss_dssp             CSSCEECCHHHHHTSCTTCEEE-ES----SCCHHHHHHHHHTTCCE
T ss_pred             ccCCccchHHHHhhcCCCCEEE-Ee----cCCHHHHHHHHHCCCEE
Confidence             122236788899999988877 33    37777777777777763

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=96.68  E-value=0.0029  Score=55.97  Aligned_cols=89  Identities=12%  Similarity=0.082  Sum_probs=63.6

Q ss_pred             CCCeEEEEc-cChHHHHHHHHhcc-CCCEEEEEcCCCCChhHHHhcCceec----CCHHhhc-----CcCCEEEEcCCCC
Q 026360           35 EGKTVGTVG-CGRIGKLLLQRLKP-FNCNLLYHDRVKMDPQLEKETGAKFE----EDLDTML-----PKCDIVVVNTPLT  103 (240)
Q Consensus        35 ~g~~vgIIG-~G~iG~~~A~~l~~-~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~ell-----~~aDiVvl~lp~~  103 (240)
                      .|.+|.|+| .|.+|...++.++. .|.+|++.++++.+.+.++++|+..+    +++.+.+     ...|+|+-++...
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~~g~~  250 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFSTTHTD  250 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEEEEECSCHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceEEEECCCch
Confidence            588999999 99999999999998 69999999987666677777876422    1222222     2478888877511


Q ss_pred             hhhhhcccHHHHccCCCCCEEEEcC
Q 026360          104 EKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       104 ~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                          .. ....++.++++..++.++
T Consensus       251 ----~~-~~~~~~~l~~~G~iv~~g  270 (363)
T 4dvj_A          251 ----KH-AAEIADLIAPQGRFCLID  270 (363)
T ss_dssp             ----HH-HHHHHHHSCTTCEEEECS
T ss_pred             ----hh-HHHHHHHhcCCCEEEEEC
Confidence                11 235667788888888773

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=96.68  E-value=0.0013  Score=56.90  Aligned_cols=87  Identities=15%  Similarity=0.085  Sum_probs=63.1

Q ss_pred             CCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhh--c-----CcCCEEEEcCCCChhhh
Q 026360           36 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTM--L-----PKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        36 g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~el--l-----~~aDiVvl~lp~~~~t~  107 (240)
                      |+ |.|+|. |.+|...++.++..|++|++.++++.+.+.++++|+..+-+..+.  +     ...|+++-++.. +   
T Consensus       148 g~-VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~d~v~d~~g~-~---  222 (324)
T 3nx4_A          148 GE-VVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGANRILSRDEFAESRPLEKQLWAGAIDTVGD-K---  222 (324)
T ss_dssp             CC-EEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTCSEEEEGGGSSCCCSSCCCCEEEEEESSCH-H---
T ss_pred             Ce-EEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecCCHHHHHhhcCCCccEEEECCCc-H---
Confidence            45 999998 999999999999999999999987777777888886432122111  1     246777777651 1   


Q ss_pred             hcccHHHHccCCCCCEEEEcCC
Q 026360          108 GMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~sr  129 (240)
                        .....++.++++..++.++.
T Consensus       223 --~~~~~~~~l~~~G~iv~~G~  242 (324)
T 3nx4_A          223 --VLAKVLAQMNYGGCVAACGL  242 (324)
T ss_dssp             --HHHHHHHTEEEEEEEEECCC
T ss_pred             --HHHHHHHHHhcCCEEEEEec
Confidence              23456777888888888863

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A

Probab=96.67  E-value=0.0084  Score=54.83  Aligned_cols=111  Identities=15%  Similarity=0.152  Sum_probs=67.3

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCCEEEE-Ec-------CCCC-Chh---HH---------------HhcCceec
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLY-HD-------RVKM-DPQ---LE---------------KETGAKFE   83 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~-~d-------~~~~-~~~---~~---------------~~~g~~~~   83 (240)
                      +.++.|+++.|.|+|++|..+|+.|...|.+|++ .|       +... ..+   ..               ..++.+.+
T Consensus       225 G~~l~g~~v~VqG~GnVG~~~a~~L~~~GakvVavsD~~G~i~dp~Gi~d~edi~~l~~~k~~~~g~v~~y~~~~~a~~i  304 (449)
T 1bgv_A          225 NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFF  304 (449)
T ss_dssp             TCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEE
T ss_pred             cCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEeCCceEECCCcCCCHHHHHHHHHHHhccCCChhhcccccCCEEe
Confidence            3578999999999999999999999999999875 44       3222 111   00               01123332


Q ss_pred             CCHHhh-cCcCCEEEEcCCCChhhhhcccHHHHccCC-CCCEEEEcCCCcccCHHHHHHHHHhC-Ccc
Q 026360           84 EDLDTM-LPKCDIVVVNTPLTEKTRGMFDKDRIAKMK-KGVLIVNNARGAIMDTQAVVDACSSG-HIA  148 (240)
Q Consensus        84 ~~l~el-l~~aDiVvl~lp~~~~t~~~i~~~~l~~mk-~gailIN~srg~~vd~~aL~~aL~~g-~i~  148 (240)
                      + .+++ -..||+++-|..     .+.|+.+....++ +|+.+|--+-......++- +.|.+. .+.
T Consensus       305 ~-~~e~~~~~~Dil~P~A~-----~~~I~~~na~~l~a~g~kiV~EgAN~p~T~eA~-~~l~~~~Gi~  365 (449)
T 1bgv_A          305 P-GEKPWGQKVDIIMPCAT-----QNDVDLEQAKKIVANNVKYYIEVANMPTTNEAL-RFLMQQPNMV  365 (449)
T ss_dssp             E-TCCGGGSCCSEEECCSC-----TTCBCHHHHHHHHHTTCCEEECCSSSCBCHHHH-HHHHHCTTCE
T ss_pred             C-chhhhcCCcceeecccc-----ccccchhhHHHHHhcCCeEEEeCCCCcCCHHHH-HHHHHcCCEE
Confidence            1 1222 346888877763     4566666666665 3444444444444566664 566665 555

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=96.67  E-value=0.0068  Score=53.54  Aligned_cols=88  Identities=17%  Similarity=0.126  Sum_probs=53.7

Q ss_pred             CeEEEEc-cChHHHHHHHHhccCC-CEEEEEcCCCCCh-hHHHh---c-C--ceecCCHHhhcCcCCEEEEcCCCChhhh
Q 026360           37 KTVGTVG-CGRIGKLLLQRLKPFN-CNLLYHDRVKMDP-QLEKE---T-G--AKFEEDLDTMLPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        37 ~~vgIIG-~G~iG~~~A~~l~~~G-~~V~~~d~~~~~~-~~~~~---~-g--~~~~~~l~ell~~aDiVvl~lp~~~~t~  107 (240)
                      .+|||+| .|.+|+.+.+.|.... +++.++....... .....   + |  -..+.++++ +..+|+|+.|+|.... .
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~~-~~~vDvV~~a~g~~~s-~   82 (345)
T 2ozp_A            5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEK-LEPADILVLALPHGVF-A   82 (345)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGGG-CCCCSEEEECCCTTHH-H
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcccccccchhH-hcCCCEEEEcCCcHHH-H
Confidence            5899999 7999999999997654 4766665432111 11110   0 1  011224444 5789999999995432 2


Q ss_pred             hcccHHHHccCCCCCEEEEcCCC
Q 026360          108 GMFDKDRIAKMKKGVLIVNNARG  130 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~srg  130 (240)
                      ... ...   ++.|..+|+.|..
T Consensus        83 ~~a-~~~---~~aG~~VId~Sa~  101 (345)
T 2ozp_A           83 REF-DRY---SALAPVLVDLSAD  101 (345)
T ss_dssp             HTH-HHH---HTTCSEEEECSST
T ss_pred             HHH-HHH---HHCCCEEEEcCcc
Confidence            221 122   4678889998863

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=96.64  E-value=0.0011  Score=56.86  Aligned_cols=66  Identities=23%  Similarity=0.267  Sum_probs=45.0

Q ss_pred             CCeEEEEcc-ChHHHHHHHHhc-cCCCEEE-EEcCCCCCh---hHH-----HhcCceecCCHHhhcCcCCEEEEcCC
Q 026360           36 GKTVGTVGC-GRIGKLLLQRLK-PFNCNLL-YHDRVKMDP---QLE-----KETGAKFEEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        36 g~~vgIIG~-G~iG~~~A~~l~-~~G~~V~-~~d~~~~~~---~~~-----~~~g~~~~~~l~ell~~aDiVvl~lp  101 (240)
                      .++|+|+|+ |.||+.+++.+. .-|+++. ++|+++...   +..     ...++...+++++++.++|+|+-+++
T Consensus         5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVIDft~   81 (273)
T 1dih_A            5 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTR   81 (273)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSC
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEEEcCC
Confidence            468999998 999999999766 4578866 667654210   100     11234445678888889999995553

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=96.64  E-value=0.0025  Score=56.15  Aligned_cols=90  Identities=18%  Similarity=0.097  Sum_probs=63.0

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCCCChhHHHhcCce---e-c-----CCHHh----hc--CcCCEEEE
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAK---F-E-----EDLDT----ML--PKCDIVVV   98 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~---~-~-----~~l~e----ll--~~aDiVvl   98 (240)
                      .|.+|.|+|.|.+|...++.++..|++ |++.++++.+.+.+++++-.   + .     .++.+    +.  ...|+|+-
T Consensus       179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid  258 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAVALE  258 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCCCCCEEEE
Confidence            588999999999999999999999998 88998876555666555211   1 0     11111    11  25899998


Q ss_pred             cCCCChhhhhcccHHHHccCCCCCEEEEcCC
Q 026360           99 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus        99 ~lp~~~~t~~~i~~~~l~~mk~gailIN~sr  129 (240)
                      ++... .    .-...++.++++..++.++-
T Consensus       259 ~~g~~-~----~~~~~~~~l~~~G~iv~~G~  284 (363)
T 3m6i_A          259 CTGVE-S----SIAAAIWAVKFGGKVFVIGV  284 (363)
T ss_dssp             CSCCH-H----HHHHHHHHSCTTCEEEECCC
T ss_pred             CCCCh-H----HHHHHHHHhcCCCEEEEEcc
Confidence            88622 1    12356677899999998873

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=96.64  E-value=0.0016  Score=56.56  Aligned_cols=87  Identities=16%  Similarity=0.147  Sum_probs=59.1

Q ss_pred             CC-eEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec---CCH-Hhhc-----CcCCEEEEcCCCCh
Q 026360           36 GK-TVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---EDL-DTML-----PKCDIVVVNTPLTE  104 (240)
Q Consensus        36 g~-~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~---~~l-~ell-----~~aDiVvl~lp~~~  104 (240)
                      |. +|.|+|. |.+|..+++.++..|++|++.++++...+.++++|+..+   .+. .+.+     ...|+++-++.. +
T Consensus       149 g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~d~vid~~g~-~  227 (328)
T 1xa0_A          149 ERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGG-R  227 (328)
T ss_dssp             GGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECSTT-T
T ss_pred             CCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcEEEecCCcHHHHHHHhcCCcccEEEECCcH-H
Confidence            44 7999998 999999999999999999999988777777777776421   111 1111     135777776652 1


Q ss_pred             hhhhcccHHHHccCCCCCEEEEcC
Q 026360          105 KTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       105 ~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                           .....++.++++..++.++
T Consensus       228 -----~~~~~~~~l~~~G~~v~~G  246 (328)
T 1xa0_A          228 -----TLATVLSRMRYGGAVAVSG  246 (328)
T ss_dssp             -----THHHHHHTEEEEEEEEECS
T ss_pred             -----HHHHHHHhhccCCEEEEEe
Confidence                 1234566677777777765

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=96.63  E-value=0.0031  Score=54.16  Aligned_cols=69  Identities=13%  Similarity=0.063  Sum_probs=48.7

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-------cCcee--------cCCHHhhcCcCCEE
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-------TGAKF--------EEDLDTMLPKCDIV   96 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-------~g~~~--------~~~l~ell~~aDiV   96 (240)
                      .+.|++|.|.|. |.||+.+++.|...|++|++.+++....+....       .++..        ..+++++++..|+|
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v   87 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGV   87 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEE
Confidence            467999999996 999999999999999999999986422211110       12211        12455667789999


Q ss_pred             EEcCC
Q 026360           97 VVNTP  101 (240)
Q Consensus        97 vl~lp  101 (240)
                      +.+..
T Consensus        88 ih~A~   92 (342)
T 1y1p_A           88 AHIAS   92 (342)
T ss_dssp             EECCC
T ss_pred             EEeCC
Confidence            87764

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=96.61  E-value=0.0014  Score=57.38  Aligned_cols=90  Identities=19%  Similarity=0.177  Sum_probs=62.3

Q ss_pred             CCCeEEEEccC-hHHHHHHHHhccC-CCEEEEEcCCCCChhHHHhcCceec-----CC----HHhhc--CcCCEEEEcCC
Q 026360           35 EGKTVGTVGCG-RIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETGAKFE-----ED----LDTML--PKCDIVVVNTP  101 (240)
Q Consensus        35 ~g~~vgIIG~G-~iG~~~A~~l~~~-G~~V~~~d~~~~~~~~~~~~g~~~~-----~~----l~ell--~~aDiVvl~lp  101 (240)
                      .|+++.|+|.| .+|..+++.++.. |++|++.++++...+.++++|....     .+    +.++.  ...|+++.++.
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g  249 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNN  249 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCC
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCEEecCCCccHHHHHHHHhcCCCceEEEECCC
Confidence            58899999999 9999999999998 9999999987655555566664321     12    22333  25788888776


Q ss_pred             CChhhhhcccHHHHccCCCCCEEEEcCC
Q 026360          102 LTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       102 ~~~~t~~~i~~~~l~~mk~gailIN~sr  129 (240)
                      ..+..     ...++.++++..++.++.
T Consensus       250 ~~~~~-----~~~~~~l~~~G~iv~~g~  272 (347)
T 1jvb_A          250 SEKTL-----SVYPKALAKQGKYVMVGL  272 (347)
T ss_dssp             CHHHH-----TTGGGGEEEEEEEEECCS
T ss_pred             CHHHH-----HHHHHHHhcCCEEEEECC
Confidence            32111     234566788888888763

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=96.60  E-value=0.0018  Score=57.81  Aligned_cols=94  Identities=15%  Similarity=0.151  Sum_probs=65.5

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceecC----C-HHhhc------CcCCEEEEcCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEE----D-LDTML------PKCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~----~-l~ell------~~aDiVvl~lp~  102 (240)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++.+.+.++++|+..+.    + +.+.+      ...|+|+-++..
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~Dvvid~~G~  264 (398)
T 1kol_A          185 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVGF  264 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCCT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCcEEccCCcchHHHHHHHHhCCCCCCEEEECCCC
Confidence            58899999999999999999999999 699999876666777788875321    1 22222      247999888863


Q ss_pred             Chhh-----h-----hcccHHHHccCCCCCEEEEcC
Q 026360          103 TEKT-----R-----GMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       103 ~~~t-----~-----~~i~~~~l~~mk~gailIN~s  128 (240)
                      ....     .     .-.-.+.++.++++..++.++
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G  300 (398)
T 1kol_A          265 EARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  300 (398)
T ss_dssp             TCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             cccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence            2100     0     001235667788888888876

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=96.60  E-value=0.00096  Score=60.91  Aligned_cols=88  Identities=20%  Similarity=0.161  Sum_probs=63.0

Q ss_pred             CCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCC--------------------------HH
Q 026360           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEED--------------------------LD   87 (240)
Q Consensus        35 ~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~--------------------------l~   87 (240)
                      .|.+|.|+|. |.+|...++.++..|++|++.++++.+.+.++++|+..+-+                          +.
T Consensus       228 ~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~~~~i~  307 (456)
T 3krt_A          228 QGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIR  307 (456)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCCEEEETTTTTCCSEEETTEECHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCcEEEecCcCcccccccccccchHHHHHHHHHHH
Confidence            5899999998 99999999999999999998887665666777777642211                          11


Q ss_pred             hhc--CcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcC
Q 026360           88 TML--PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus        88 ell--~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      ++.  ...|+|+-++.. +     .....+..++++..++.++
T Consensus       308 ~~t~g~g~Dvvid~~G~-~-----~~~~~~~~l~~~G~iv~~G  344 (456)
T 3krt_A          308 ELTGGEDIDIVFEHPGR-E-----TFGASVFVTRKGGTITTCA  344 (456)
T ss_dssp             HHHTSCCEEEEEECSCH-H-----HHHHHHHHEEEEEEEEESC
T ss_pred             HHhCCCCCcEEEEcCCc-h-----hHHHHHHHhhCCcEEEEEe
Confidence            112  357888887762 1     1234566778888888876

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=96.60  E-value=0.005  Score=54.10  Aligned_cols=89  Identities=17%  Similarity=0.082  Sum_probs=62.7

Q ss_pred             CC-CeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCC----hhHHHhcCceecCC--------HHhhc--------Cc
Q 026360           35 EG-KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMD----PQLEKETGAKFEED--------LDTML--------PK   92 (240)
Q Consensus        35 ~g-~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~----~~~~~~~g~~~~~~--------l~ell--------~~   92 (240)
                      .| .+|.|+|. |.+|...++.++..|++|++..++...    .+.++++|+..+-+        +.+.+        ..
T Consensus       166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~~~~~g  245 (364)
T 1gu7_A          166 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGE  245 (364)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCC
T ss_pred             CCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhhccCCC
Confidence            47 89999998 999999999999999998888765444    34556777643211        11111        25


Q ss_pred             CCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCC
Q 026360           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus        93 aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~sr  129 (240)
                      .|+|+-++.. +.   . . ..++.++++..++.++-
T Consensus       246 ~Dvvid~~G~-~~---~-~-~~~~~l~~~G~~v~~g~  276 (364)
T 1gu7_A          246 AKLALNCVGG-KS---S-T-GIARKLNNNGLMLTYGG  276 (364)
T ss_dssp             EEEEEESSCH-HH---H-H-HHHHTSCTTCEEEECCC
T ss_pred             ceEEEECCCc-hh---H-H-HHHHHhccCCEEEEecC
Confidence            7999888862 11   1 1 45788899999998873

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=96.59  E-value=0.0019  Score=56.10  Aligned_cols=87  Identities=15%  Similarity=0.126  Sum_probs=62.6

Q ss_pred             CC-eEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhh----c-----CcCCEEEEcCCCCh
Q 026360           36 GK-TVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTM----L-----PKCDIVVVNTPLTE  104 (240)
Q Consensus        36 g~-~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~el----l-----~~aDiVvl~lp~~~  104 (240)
                      |. +|.|+|. |.+|..+++.++..|++|++.++++...+.++++|+..+-+..+.    +     ...|+++-++.. +
T Consensus       150 g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~~~d~vid~~g~-~  228 (330)
T 1tt7_A          150 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGG-K  228 (330)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCCT-H
T ss_pred             CCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEECCCchHHHHHHhhcCCccEEEECCcH-H
Confidence            44 7999998 999999999999999999999987777777777776432222221    1     136788777752 2


Q ss_pred             hhhhcccHHHHccCCCCCEEEEcC
Q 026360          105 KTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       105 ~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                           ...+.++.++++..++.++
T Consensus       229 -----~~~~~~~~l~~~G~iv~~G  247 (330)
T 1tt7_A          229 -----QLASLLSKIQYGGSVAVSG  247 (330)
T ss_dssp             -----HHHHHHTTEEEEEEEEECC
T ss_pred             -----HHHHHHHhhcCCCEEEEEe
Confidence                 1235667788888888776

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=96.58  E-value=0.009  Score=55.05  Aligned_cols=102  Identities=18%  Similarity=0.130  Sum_probs=70.0

Q ss_pred             ccCCCeEEEEcc----------ChHHHHHHHHhccCCCEEEEEcCCCCChh---HHHh-c-------CceecCCHHhhcC
Q 026360           33 DLEGKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKMDPQ---LEKE-T-------GAKFEEDLDTMLP   91 (240)
Q Consensus        33 ~l~g~~vgIIG~----------G~iG~~~A~~l~~~G~~V~~~d~~~~~~~---~~~~-~-------g~~~~~~l~ell~   91 (240)
                      .+.|++|+|+|+          ..-...+++.|...|++|.+|||.-...+   .... +       .+..+.++.+.++
T Consensus       332 ~~~~~~v~vlGlafK~~~dd~R~Spa~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (481)
T 2o3j_A          332 TVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITVESDPYAAAR  411 (481)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHHHHSCHHHHHHHEEEESSHHHHHT
T ss_pred             ccCCCeEEEEeeeeCCCCCccccChHHHHHHHHHHCCCEEEEECCCCCchhhHHHHHhhhccccccCceeecCCHHHHHc
Confidence            478999999995          35778899999999999999998642211   1111 1       1344567888999


Q ss_pred             cCCEEEEcCCCChhhhhcccH-HHHccCCCCCEEEEcCCCcccCHHHH
Q 026360           92 KCDIVVVNTPLTEKTRGMFDK-DRIAKMKKGVLIVNNARGAIMDTQAV  138 (240)
Q Consensus        92 ~aDiVvl~lp~~~~t~~~i~~-~~l~~mk~gailIN~srg~~vd~~aL  138 (240)
                      ++|+|++++.-. +.+.+ +- ...+.|+...+++|. |+ ++|.+.+
T Consensus       412 ~ad~~vi~t~~~-~f~~~-~~~~~~~~~~~~~~i~D~-r~-~~~~~~~  455 (481)
T 2o3j_A          412 GAHAIVVLTEWD-EFVEL-NYSQIHNDMQHPAAIFDG-RL-ILDQKAL  455 (481)
T ss_dssp             TCSEEEECSCCG-GGTTS-CHHHHHHHSCSSCEEEES-SS-CSCHHHH
T ss_pred             CCCEEEEcCCcH-Hhhcc-CHHHHHHhcCCCCEEEEC-CC-CCCHHHH
Confidence            999999999743 33333 43 344567776688886 54 3565543

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=96.58  E-value=0.0047  Score=54.62  Aligned_cols=88  Identities=16%  Similarity=0.135  Sum_probs=50.7

Q ss_pred             CeEEEEccChHHHHHHHHhccC-CCEEEEE-cCCCCChhH---------------------HHhcCceecCCHHhhcCcC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLLYH-DRVKMDPQL---------------------EKETGAKFEEDLDTMLPKC   93 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~-G~~V~~~-d~~~~~~~~---------------------~~~~g~~~~~~l~ell~~a   93 (240)
                      .+|||+|+|.||+.+++.+... +++|.++ |.++.....                     +...++....+.++++.++
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~v   82 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIEDA   82 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGGC
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccCC
Confidence            4899999999999999998765 5786655 332111110                     1111111122445566789


Q ss_pred             CEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcC
Q 026360           94 DIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus        94 DiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      |+|+.|+|....... .  + -..++.|..+|..+
T Consensus        83 DiV~eatg~~~s~~~-a--~-~~~l~aG~~VI~sa  113 (343)
T 2yyy_A           83 DIVVDGAPKKIGKQN-L--E-NIYKPHKVKAILQG  113 (343)
T ss_dssp             SEEEECCCTTHHHHH-H--H-HTTTTTTCEEEECT
T ss_pred             CEEEECCCccccHHH-H--H-HHHHHCCCEEEECC
Confidence            999999984321111 0  0 13466666555433

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=96.58  E-value=0.0018  Score=57.04  Aligned_cols=88  Identities=13%  Similarity=0.069  Sum_probs=58.4

Q ss_pred             CCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-----CCHH----hhc--CcCCEEEEcCCC
Q 026360           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLD----TML--PKCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~----ell--~~aDiVvl~lp~  102 (240)
                      .|++|.|+| .|.+|..+++.++..|++|++.++++...+.++++|....     .+..    +..  ...|+++.++..
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~G~  241 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIGG  241 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCG
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCChHHHHHHHHHhcCCCceEEEECCCc
Confidence            589999999 7999999999999999999999987544455555554311     1111    111  136777776652


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEEcC
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                       +     .....++.++++..++.++
T Consensus       242 -~-----~~~~~~~~l~~~G~iv~~G  261 (354)
T 2j8z_A          242 -S-----YWEKNVNCLALDGRWVLYG  261 (354)
T ss_dssp             -G-----GHHHHHHHEEEEEEEEECC
T ss_pred             -h-----HHHHHHHhccCCCEEEEEe
Confidence             1     1234456677777777765

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=96.58  E-value=0.0031  Score=54.67  Aligned_cols=106  Identities=14%  Similarity=0.146  Sum_probs=67.4

Q ss_pred             CCeEEEEcc-ChHHHHHHHHhccCCCE-EEEEcCCCCChhHHHhcCceecCCHHhhcC--c-CCEEEEcCCCChhhhhcc
Q 026360           36 GKTVGTVGC-GRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLP--K-CDIVVVNTPLTEKTRGMF  110 (240)
Q Consensus        36 g~~vgIIG~-G~iG~~~A~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~~~l~ell~--~-aDiVvl~lp~~~~t~~~i  110 (240)
                      ..++.|+|. |++|+.+++.+...|++ |..+++.....+   -.|+..+.+++++.+  . .|++++++|. +.+...+
T Consensus        13 ~~~vvV~Gasg~~G~~~~~~l~~~g~~~v~~VnP~~~g~~---i~G~~vy~sl~el~~~~~~~DvaIi~vp~-~~~~~~v   88 (297)
T 2yv2_A           13 ETRVLVQGITGREGSFHAKAMLEYGTKVVAGVTPGKGGSE---VHGVPVYDSVKEALAEHPEINTSIVFVPA-PFAPDAV   88 (297)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCE---ETTEEEESSHHHHHHHCTTCCEEEECCCG-GGHHHHH
T ss_pred             CCEEEEECCCCCHHHHHHHHHHhCCCcEEEEeCCCCCCce---ECCEeeeCCHHHHhhcCCCCCEEEEecCH-HHHHHHH
Confidence            445777798 99999999999988998 345565321111   247777789999886  5 9999999993 2223332


Q ss_pred             cHHHHccCCCCCEEEEcCCCc-ccCHHHHHHHHHhCCcc
Q 026360          111 DKDRIAKMKKGVLIVNNARGA-IMDTQAVVDACSSGHIA  148 (240)
Q Consensus       111 ~~~~l~~mk~gailIN~srg~-~vd~~aL~~aL~~g~i~  148 (240)
                      . +..+ .+... +|..+.|- .-+++.+.++.++..+.
T Consensus        89 ~-ea~~-~Gi~~-vVi~t~G~~~~~~~~l~~~A~~~gi~  124 (297)
T 2yv2_A           89 Y-EAVD-AGIRL-VVVITEGIPVHDTMRFVNYARQKGAT  124 (297)
T ss_dssp             H-HHHH-TTCSE-EEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             H-HHHH-CCCCE-EEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            2 3332 22222 44455552 23456888888887665

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=96.58  E-value=0.0055  Score=53.24  Aligned_cols=68  Identities=22%  Similarity=0.237  Sum_probs=45.1

Q ss_pred             cCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCC-hhHH------HhcCceec-------CCHHhhcC--cCCEE
Q 026360           34 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMD-PQLE------KETGAKFE-------EDLDTMLP--KCDIV   96 (240)
Q Consensus        34 l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~-~~~~------~~~g~~~~-------~~l~ell~--~aDiV   96 (240)
                      ...++|.|.|. |.+|+.+++.|...|++|++.+|++.. .+..      ...++..+       +++.++++  .+|+|
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V   87 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIV   87 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEE
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEE
Confidence            34679999997 999999999999999999999986522 1111      12233211       23445666  77877


Q ss_pred             EEcCC
Q 026360           97 VVNTP  101 (240)
Q Consensus        97 vl~lp  101 (240)
                      +.+..
T Consensus        88 i~~a~   92 (346)
T 3i6i_A           88 VSTVG   92 (346)
T ss_dssp             EECCC
T ss_pred             EECCc
Confidence            77665

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=96.55  E-value=0.0019  Score=54.17  Aligned_cols=64  Identities=16%  Similarity=0.280  Sum_probs=46.0

Q ss_pred             eEEEEcc-ChHHHHHHHHhccC--CCEEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCcCCEEEEcCC
Q 026360           38 TVGTVGC-GRIGKLLLQRLKPF--NCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        38 ~vgIIG~-G~iG~~~A~~l~~~--G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~ell~~aDiVvl~lp  101 (240)
                      +|.|.|. |.+|+.+++.|...  |++|++.+|++.........++..       .++++++++.+|+|+.+..
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~   74 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISS   74 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence            4788996 99999999999988  999999998764433332233321       1245677889999987765

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.54  E-value=0.0016  Score=56.47  Aligned_cols=88  Identities=17%  Similarity=0.126  Sum_probs=60.3

Q ss_pred             CCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-----CCHH-hh---c--CcCCEEEEcCCC
Q 026360           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLD-TM---L--PKCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~-el---l--~~aDiVvl~lp~  102 (240)
                      .|+++.|.| .|.||..+++.++..|++|++.++++...+.++++|....     .+.. ++   .  ...|+++.++. 
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~~g-  218 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVG-  218 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECSC-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEECCCccHHHHHHHHhCCCCceEEEECCc-
Confidence            589999999 7999999999999999999999986544455555554311     1221 11   1  13688877775 


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEEcC
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                       ..    .....++.++++..++.++
T Consensus       219 -~~----~~~~~~~~l~~~G~iv~~g  239 (327)
T 1qor_A          219 -RD----TWERSLDCLQRRGLMVSFG  239 (327)
T ss_dssp             -GG----GHHHHHHTEEEEEEEEECC
T ss_pred             -hH----HHHHHHHHhcCCCEEEEEe
Confidence             11    1245566778887888776

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=96.54  E-value=0.0066  Score=53.73  Aligned_cols=89  Identities=15%  Similarity=0.024  Sum_probs=63.0

Q ss_pred             cCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-----CCHHhhc-----CcCCEEEEcCCC
Q 026360           34 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML-----PKCDIVVVNTPL  102 (240)
Q Consensus        34 l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell-----~~aDiVvl~lp~  102 (240)
                      -.|.+|.|+|. |.+|...++.++..|++|++.. ++.+.+.++++|+..+     .++.+.+     ...|+++-++..
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d~v~d~~g~  241 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCITN  241 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCCEEEESSCS
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHHcCCcEEEECCCchHHHHHHHHccCCccEEEECCCc
Confidence            36899999999 8999999999999999988875 4556677788886422     1222222     237999888863


Q ss_pred             ChhhhhcccHHHHccC-CCCCEEEEcC
Q 026360          103 TEKTRGMFDKDRIAKM-KKGVLIVNNA  128 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~m-k~gailIN~s  128 (240)
                      .+.     ....++.+ +++..++.++
T Consensus       242 ~~~-----~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          242 VES-----TTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             HHH-----HHHHHHHSCTTCEEEEESS
T ss_pred             hHH-----HHHHHHHhhcCCCEEEEEe
Confidence            211     23445667 5888888886

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=96.54  E-value=0.0023  Score=55.93  Aligned_cols=88  Identities=18%  Similarity=0.137  Sum_probs=57.3

Q ss_pred             CCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-----CCHH----hhc--CcCCEEEEcCCC
Q 026360           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLD----TML--PKCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~----ell--~~aDiVvl~lp~  102 (240)
                      .|+++.|+|. |.+|..+++.++..|++|++.++++...+.++++|...+     .++.    ++.  ...|+|+.++. 
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g-  244 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGADETVNYTHPDWPKEVRRLTGGKGADKVVDHTG-  244 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTSTTHHHHHHHHTTTTCEEEEEESSC-
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCC-
Confidence            5899999999 999999999999999999999986544455555554211     1111    111  14566666664 


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEEcC
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      .+     .....++.++++..++.++
T Consensus       245 ~~-----~~~~~~~~l~~~G~~v~~g  265 (343)
T 2eih_A          245 AL-----YFEGVIKATANGGRIAIAG  265 (343)
T ss_dssp             SS-----SHHHHHHHEEEEEEEEESS
T ss_pred             HH-----HHHHHHHhhccCCEEEEEe
Confidence            11     1234455566666666665

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=96.54  E-value=0.004  Score=52.49  Aligned_cols=66  Identities=12%  Similarity=0.068  Sum_probs=47.9

Q ss_pred             CeEEEEc-cChHHHHHHHHhccC-CCEEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCcCCEEEEcCCC
Q 026360           37 KTVGTVG-CGRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        37 ~~vgIIG-~G~iG~~~A~~l~~~-G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~ell~~aDiVvl~lp~  102 (240)
                      ++|.|.| .|.+|+.+++.|... |++|.+.+|++.........+++.       .++++++++.+|+|+.+.+.
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~   75 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSI   75 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence            4789999 599999999999887 999999998754332222223321       13456788999999888764

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=96.54  E-value=0.0014  Score=57.49  Aligned_cols=88  Identities=16%  Similarity=0.125  Sum_probs=62.0

Q ss_pred             CCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec---CCHHhhc------CcCCEEEEcCCCCh
Q 026360           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---EDLDTML------PKCDIVVVNTPLTE  104 (240)
Q Consensus        35 ~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~---~~l~ell------~~aDiVvl~lp~~~  104 (240)
                      .|++|.|+| .|.+|..+++.++..|++|++. .++...+.++++|+..+   .++.+.+      ...|+++-++.. +
T Consensus       150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~lGa~~i~~~~~~~~~~~~~~~~~g~D~vid~~g~-~  227 (343)
T 3gaz_A          150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDLGATPIDASREPEDYAAEHTAGQGFDLVYDTLGG-P  227 (343)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHHTSEEEETTSCHHHHHHHHHTTSCEEEEEESSCT-H
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHcCCCEeccCCCHHHHHHHHhcCCCceEEEECCCc-H
Confidence            589999999 7999999999999999999988 55545566666776532   1222222      257888887762 1


Q ss_pred             hhhhcccHHHHccCCCCCEEEEcCC
Q 026360          105 KTRGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       105 ~t~~~i~~~~l~~mk~gailIN~sr  129 (240)
                           .....+..++++..+|.++-
T Consensus       228 -----~~~~~~~~l~~~G~iv~~g~  247 (343)
T 3gaz_A          228 -----VLDASFSAVKRFGHVVSCLG  247 (343)
T ss_dssp             -----HHHHHHHHEEEEEEEEESCC
T ss_pred             -----HHHHHHHHHhcCCeEEEEcc
Confidence                 12355667888888888763

>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*

Probab=96.53  E-value=0.01  Score=52.69  Aligned_cols=97  Identities=11%  Similarity=0.172  Sum_probs=68.8

Q ss_pred             cccCCCeEEEEcc--ChHHHHHHHHhccCCCEEEEEcCCCCC--hh-------HHHhcC--ceecCCHHhhcCcCCEEEE
Q 026360           32 YDLEGKTVGTVGC--GRIGKLLLQRLKPFNCNLLYHDRVKMD--PQ-------LEKETG--AKFEEDLDTMLPKCDIVVV   98 (240)
Q Consensus        32 ~~l~g~~vgIIG~--G~iG~~~A~~l~~~G~~V~~~d~~~~~--~~-------~~~~~g--~~~~~~l~ell~~aDiVvl   98 (240)
                      ..+.|++|++||=  ++++++.+..+..+|++|.+..|....  .+       .+...|  +...+++++.++++|+|..
T Consensus       177 ~~l~gl~ia~vGD~~~~va~S~~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt  256 (358)
T 4h31_A          177 KALADIQFAYLGDARNNVGNSLMVGAAKMGMDIRLVGPQAYWPDEELVAACQAIAKQTGGKITLTENVAEGVQGCDFLYT  256 (358)
T ss_dssp             CCGGGCEEEEESCTTSHHHHHHHHHHHHHTCEEEEESCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEE
T ss_pred             CCcCceEEEecCCCCcccchHHHHHHHhcCceEEEeCCcccCCCHHHHHHHHHHHHHcCCcceeccCHHHHhccCcEEEE
Confidence            3688999999994  589999999999999999999875321  11       122334  3456799999999999986


Q ss_pred             cCCCC----hh---------hhhcccHHHHcc-CCCCCEEEEcC
Q 026360           99 NTPLT----EK---------TRGMFDKDRIAK-MKKGVLIVNNA  128 (240)
Q Consensus        99 ~lp~~----~~---------t~~~i~~~~l~~-mk~gailIN~s  128 (240)
                      -.-..    ++         ...-++.+.++. .||+++|..+.
T Consensus       257 ~~w~s~~~~~~~~~~~~~~~~~y~v~~~~l~~~ak~~~i~mH~L  300 (358)
T 4h31_A          257 DVWVSMGESPEAWDERVALMKPYQVNMNVLKQTGNPNVKFMHCL  300 (358)
T ss_dssp             CCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHHTTCTTCEEEECS
T ss_pred             EEEEEcccCchhHHHHHHHHhCcccCHHHHHhcCCCCcEEECCC
Confidence            43211    11         112467788875 47889888875

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=96.53  E-value=0.0016  Score=56.95  Aligned_cols=89  Identities=16%  Similarity=0.102  Sum_probs=65.3

Q ss_pred             CCCeEEEEccChHHHHHHHHhccC-CCEEEEEcCCCCChhHHHhcCceec----CCHHh----hcC--cCCEEEEcCCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETGAKFE----EDLDT----MLP--KCDIVVVNTPLT  103 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~-G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~e----ll~--~aDiVvl~lp~~  103 (240)
                      .|.+|.|+|.|.+|...++.++.. |.+|++.++++.+.+.++++|+..+    .++.+    +..  ..|+|+-++...
T Consensus       171 ~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~~G~~  250 (345)
T 3jv7_A          171 PGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDFVGAQ  250 (345)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEESSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEECCCCH
Confidence            589999999999999999999987 7899999987766777788886422    12222    111  578888888732


Q ss_pred             hhhhhcccHHHHccCCCCCEEEEcC
Q 026360          104 EKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       104 ~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      +     .-...++.++++..++.++
T Consensus       251 ~-----~~~~~~~~l~~~G~iv~~G  270 (345)
T 3jv7_A          251 S-----TIDTAQQVVAVDGHISVVG  270 (345)
T ss_dssp             H-----HHHHHHHHEEEEEEEEECS
T ss_pred             H-----HHHHHHHHHhcCCEEEEEC
Confidence            1     1235667788888888886

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=96.52  E-value=0.011  Score=53.97  Aligned_cols=84  Identities=15%  Similarity=0.179  Sum_probs=62.0

Q ss_pred             ccCCCeEEEEccC----------hHHHHHHHHhccC-CCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCC
Q 026360           33 DLEGKTVGTVGCG----------RIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        33 ~l~g~~vgIIG~G----------~iG~~~A~~l~~~-G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp  101 (240)
                      .+.|++|+|+|+-          .-...+++.|... |.+|.+|||.-...        ....++++.++.+|+|++++.
T Consensus       312 ~~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~--------~~~~~~~~~~~~ad~vvi~t~  383 (431)
T 3ojo_A          312 ALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD--------FVEHDMSHAVKDASLVLILSD  383 (431)
T ss_dssp             HSSCCEEEEECCCSSTTSCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT--------TBCSTTHHHHTTCSEEEECSC
T ss_pred             hcCCCEEEEEeeeeCCCCcchhcChHHHHHHHHHhhcCCEEEEECCCcccc--------cccCCHHHHHhCCCEEEEecC
Confidence            4789999999963          3467889999999 99999999864321        134578899999999999987


Q ss_pred             CChhhhhcccHHHHccCCCCCEEEEc
Q 026360          102 LTEKTRGMFDKDRIAKMKKGVLIVNN  127 (240)
Q Consensus       102 ~~~~t~~~i~~~~l~~mk~gailIN~  127 (240)
                      -. +.+. ++-+.++.|+ +.+++|+
T Consensus       384 ~~-~f~~-~d~~~~~~~~-~~~i~D~  406 (431)
T 3ojo_A          384 HS-EFKN-LSDSHFDKMK-HKVIFDT  406 (431)
T ss_dssp             CG-GGTS-CCGGGGTTCS-SCEEEES
T ss_pred             CH-HHhc-cCHHHHHhCC-CCEEEEC
Confidence            43 3333 2333446676 6788886

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=96.51  E-value=0.0078  Score=51.02  Aligned_cols=66  Identities=17%  Similarity=0.234  Sum_probs=46.3

Q ss_pred             CCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCCh---hHH------HhcCceec-------CCHHhhcCcCCEEEE
Q 026360           36 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP---QLE------KETGAKFE-------EDLDTMLPKCDIVVV   98 (240)
Q Consensus        36 g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~---~~~------~~~g~~~~-------~~l~ell~~aDiVvl   98 (240)
                      .++|.|.|. |.+|+.+++.|.+.|++|++.+|+....   +..      ...+++.+       +++.++++.+|+|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~   83 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS   83 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence            578999996 9999999999999999999999864321   111      12243321       234566777888877


Q ss_pred             cCC
Q 026360           99 NTP  101 (240)
Q Consensus        99 ~lp  101 (240)
                      +++
T Consensus        84 ~a~   86 (308)
T 1qyc_A           84 TVG   86 (308)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            765

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=96.51  E-value=0.0023  Score=55.34  Aligned_cols=72  Identities=17%  Similarity=0.153  Sum_probs=50.2

Q ss_pred             ccccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChh-HHHh-cCcee-------cCCHHhhcC--cCCEEEE
Q 026360           31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKE-TGAKF-------EEDLDTMLP--KCDIVVV   98 (240)
Q Consensus        31 ~~~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~-~g~~~-------~~~l~ell~--~aDiVvl   98 (240)
                      ..++.|++|.|.|. |.||+.+++.|...|++|++.+++..... .... .++..       ..+++++++  ..|+|+.
T Consensus        15 ~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih   94 (330)
T 2pzm_A           15 VPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVH   94 (330)
T ss_dssp             CSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             cccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEE
Confidence            45789999999996 99999999999999999999998543221 0011 11111       123456677  8899988


Q ss_pred             cCCC
Q 026360           99 NTPL  102 (240)
Q Consensus        99 ~lp~  102 (240)
                      +...
T Consensus        95 ~A~~   98 (330)
T 2pzm_A           95 SAAA   98 (330)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            7653

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=96.51  E-value=0.0075  Score=50.40  Aligned_cols=37  Identities=19%  Similarity=0.340  Sum_probs=33.2

Q ss_pred             ccCCCeEEEEcc-Ch--HHHHHHHHhccCCCEEEEEcCCC
Q 026360           33 DLEGKTVGTVGC-GR--IGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~--iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      ++.||++.|.|. |.  ||+.+|+.|...|++|++.+++.
T Consensus         4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   43 (266)
T 3oig_A            4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGE   43 (266)
T ss_dssp             CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCch
Confidence            588999999997 45  99999999999999999998864

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=96.50  E-value=0.0041  Score=54.19  Aligned_cols=91  Identities=18%  Similarity=0.122  Sum_probs=64.7

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCCCChhHHHhcCceec-----CCHHhhc------CcCCEEEEcCC
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDLDTML------PKCDIVVVNTP  101 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell------~~aDiVvl~lp  101 (240)
                      ..|.+|.|.|.|.+|...++.++..|+. +++.++++.+.+.++++|+..+     .+..+..      ...|+|+-++.
T Consensus       159 ~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g~d~v~d~~G  238 (346)
T 4a2c_A          159 CENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQLILETAG  238 (346)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCSSEEEEECSC
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCCccccccccc
Confidence            3689999999999999999999999987 4677877666677888886422     2222222      34678877775


Q ss_pred             CChhhhhcccHHHHccCCCCCEEEEcCC
Q 026360          102 LTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       102 ~~~~t~~~i~~~~l~~mk~gailIN~sr  129 (240)
                      . +.+    -...++.++++..++.++-
T Consensus       239 ~-~~~----~~~~~~~l~~~G~~v~~g~  261 (346)
T 4a2c_A          239 V-PQT----VELAVEIAGPHAQLALVGT  261 (346)
T ss_dssp             S-HHH----HHHHHHHCCTTCEEEECCC
T ss_pred             c-cch----hhhhhheecCCeEEEEEec
Confidence            2 221    2345677899998888773

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=96.50  E-value=0.011  Score=50.54  Aligned_cols=65  Identities=20%  Similarity=0.264  Sum_probs=47.0

Q ss_pred             CeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCC-ChhHH---HhcCceec-------CCHHhhcCcCCEEEEcCC
Q 026360           37 KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM-DPQLE---KETGAKFE-------EDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        37 ~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~-~~~~~---~~~g~~~~-------~~l~ell~~aDiVvl~lp  101 (240)
                      ++|.|.|. |.+|+.+++.|...|++|++.+|++. .....   ...+++.+       +++.++++.+|+|+.+.+
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~   88 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALA   88 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence            58999995 99999999999999999999998763 22211   22344321       235567888898887775

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=96.50  E-value=0.0026  Score=57.82  Aligned_cols=113  Identities=14%  Similarity=0.143  Sum_probs=72.8

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCCh--hHHHhcCceec--CCHHhhcCcCCEEEEcCC---CChh
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKETGAKFE--EDLDTMLPKCDIVVVNTP---LTEK  105 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~--~~~~~~g~~~~--~~l~ell~~aDiVvl~lp---~~~~  105 (240)
                      ++.+|+|.|||+|..|.+.|+.|+..|++|+++|......  .... .|+...  ....+.++.+|.|++...   ..|.
T Consensus         2 ~~~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~~~~~~~~~~d~vV~s~gi~~~~p~   80 (439)
T 2x5o_A            2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EAVERHTGSLNDEWLMAADLIVASPGIALAHPS   80 (439)
T ss_dssp             CCTTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSC-TTSCEEESSCCHHHHHTCSEEEECTTSCTTCHH
T ss_pred             CCCCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhh-CCCEEEECCCcHHHhccCCEEEeCCCCCCCCHH
Confidence            3678999999999999999999999999999999754332  2223 465432  112455568999888742   2232


Q ss_pred             hh-------hcccH-HHH-ccCCCCCEEEEcCCCcccCHHHHHHHHHhCC
Q 026360          106 TR-------GMFDK-DRI-AKMKKGVLIVNNARGAIMDTQAVVDACSSGH  146 (240)
Q Consensus       106 t~-------~~i~~-~~l-~~mk~gailIN~srg~~vd~~aL~~aL~~g~  146 (240)
                      ..       .++.+ +.+ ..++...+-|--+.|+.-...-+...|++..
T Consensus        81 ~~~a~~~~~~v~~~~~~~~~~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g  130 (439)
T 2x5o_A           81 LSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAG  130 (439)
T ss_dssp             HHHHHHTTCEEECHHHHHHHHCCSCEEEEECSSSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            21       12322 122 2245445666666788777777777777643

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=96.49  E-value=0.01  Score=52.16  Aligned_cols=88  Identities=13%  Similarity=0.172  Sum_probs=61.2

Q ss_pred             CCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCC----hhHHHhcCceecCC--------HHhhcC---cCCEEEE
Q 026360           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMD----PQLEKETGAKFEED--------LDTMLP---KCDIVVV   98 (240)
Q Consensus        35 ~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~----~~~~~~~g~~~~~~--------l~ell~---~aDiVvl   98 (240)
                      .|.+|.|+|. |.+|...++.++..|+++++.......    .+.++++|+..+-+        +.++..   ..|+|+-
T Consensus       167 ~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~~Dvvid  246 (357)
T 1zsy_A          167 PGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFFKDMPQPRLALN  246 (357)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEHHHHHSGGGGGTTSSSCCCSEEEE
T ss_pred             CCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCcEEEecCcchHHHHHHHHhCCCCceEEEE
Confidence            5899999998 999999999999999987766543322    24566777643212        222222   3799988


Q ss_pred             cCCCChhhhhcccHHHHccCCCCCEEEEcC
Q 026360           99 NTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus        99 ~lp~~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      ++.. +.+     .+.++.++++..+|.++
T Consensus       247 ~~g~-~~~-----~~~~~~l~~~G~iv~~G  270 (357)
T 1zsy_A          247 CVGG-KSS-----TELLRQLARGGTMVTYG  270 (357)
T ss_dssp             SSCH-HHH-----HHHHTTSCTTCEEEECC
T ss_pred             CCCc-HHH-----HHHHHhhCCCCEEEEEe
Confidence            8762 221     24678899999998885

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.49  E-value=0.0023  Score=54.05  Aligned_cols=67  Identities=16%  Similarity=0.183  Sum_probs=46.1

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHH-H--hcCceecCCHHhhcCc-CCEEEEcCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-K--ETGAKFEEDLDTMLPK-CDIVVVNTP  101 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~-~--~~g~~~~~~l~ell~~-aDiVvl~lp  101 (240)
                      .+++|.|.|.|.||+.+++.|.+.|++|++.+|+....... .  ...+....+++++++. +|+|+.+..
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~   72 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHLRPEILVYCVA   72 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccccccCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence            46799999999999999999999999999999875432100 0  0011111234456666 999987653

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.48  E-value=0.0065  Score=51.50  Aligned_cols=67  Identities=19%  Similarity=0.198  Sum_probs=46.2

Q ss_pred             CCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCC-CC--h-hHH------HhcCceec-------CCHHhhcCcCCEEE
Q 026360           36 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK-MD--P-QLE------KETGAKFE-------EDLDTMLPKCDIVV   97 (240)
Q Consensus        36 g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~-~~--~-~~~------~~~g~~~~-------~~l~ell~~aDiVv   97 (240)
                      +++|.|.|. |.+|+.+++.|...|++|++.+|++ ..  . +..      ...++..+       +++.++++.+|+|+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi   81 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVI   81 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEE
Confidence            578999996 9999999999998899999999864 11  1 111      12243211       23456677888887


Q ss_pred             EcCCC
Q 026360           98 VNTPL  102 (240)
Q Consensus        98 l~lp~  102 (240)
                      .+.+.
T Consensus        82 ~~a~~   86 (307)
T 2gas_A           82 CAAGR   86 (307)
T ss_dssp             ECSSS
T ss_pred             ECCcc
Confidence            77653

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=96.46  E-value=0.00027  Score=61.88  Aligned_cols=89  Identities=20%  Similarity=0.191  Sum_probs=58.4

Q ss_pred             CCCeEEEEccChHHHHHHHHhcc-CCCEEEEEcCCCCChhHHHhcCceec-----CCHHh-h---cC--cCCEEEEcCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKP-FNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDT-M---LP--KCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~-~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e-l---l~--~aDiVvl~lp~  102 (240)
                      .|.+|.|+|.|.+|...++.++. .|.+|++.++++.+.+.+++.|...+     .+..+ +   ..  ..|+++.+...
T Consensus       163 ~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g~g~d~~~~~~~~  242 (348)
T 4eez_A          163 PGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKITGGLGVQSAIVCAVA  242 (348)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHTTSSCEEEEEECCSC
T ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhcCCCCceEEEEeccC
Confidence            58899999999999999999885 58899999987655666777775321     12222 1   11  24556655542


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEEcC
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      . .+    ....++.++++..++.++
T Consensus       243 ~-~~----~~~~~~~l~~~G~~v~~g  263 (348)
T 4eez_A          243 R-IA----FEQAVASLKPMGKMVAVA  263 (348)
T ss_dssp             H-HH----HHHHHHTEEEEEEEEECC
T ss_pred             c-ch----hheeheeecCCceEEEEe
Confidence            1 11    234556677777777665

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=96.46  E-value=0.0037  Score=56.58  Aligned_cols=65  Identities=18%  Similarity=0.308  Sum_probs=46.6

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCcee---cC---CHHhhcCcCCEEEE
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF---EE---DLDTMLPKCDIVVV   98 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~---~~---~l~ell~~aDiVvl   98 (240)
                      -+.|++|+|+|-|.+|+.+++.++.+|++|+++|+++..+.... .....   ..   .+.++++++|+|+.
T Consensus        32 ~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~-ad~~~~~~~~d~~~l~~~a~~~D~V~~  102 (419)
T 4e4t_A           32 ILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPASPAGAV-ADRHLRAAYDDEAALAELAGLCEAVST  102 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTTCHHHHH-SSEEECCCTTCHHHHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCcCchhhh-CCEEEECCcCCHHHHHHHHhcCCEEEE
Confidence            46899999999999999999999999999999997654332211 11111   12   23455677898874

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=96.45  E-value=0.0021  Score=55.95  Aligned_cols=88  Identities=9%  Similarity=0.151  Sum_probs=58.2

Q ss_pred             CCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-----CCHH----hhc--CcCCEEEEcCCC
Q 026360           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLD----TML--PKCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~----ell--~~aDiVvl~lp~  102 (240)
                      .|+++.|.|. |.+|..+++.++..|++|++.++++...+.++++|....     .+..    +..  ...|+++.++..
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~i~~~~~~~~~d~vi~~~g~  224 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGCHHTINYSTQDFAEVVREITGGKGVDVVYDSIGK  224 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEECSCT
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCCHHHHHHHHHHhCCCCCeEEEECCcH
Confidence            5889999995 999999999999999999999986544445555554211     1111    111  236777776652


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEEcC
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                            -.....++.++++..+|.++
T Consensus       225 ------~~~~~~~~~l~~~G~iv~~g  244 (333)
T 1wly_A          225 ------DTLQKSLDCLRPRGMCAAYG  244 (333)
T ss_dssp             ------TTHHHHHHTEEEEEEEEECC
T ss_pred             ------HHHHHHHHhhccCCEEEEEe
Confidence                  11235566677777777765

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=96.45  E-value=0.0019  Score=56.90  Aligned_cols=88  Identities=14%  Similarity=0.170  Sum_probs=58.1

Q ss_pred             CCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-----CCHHh----hcC--cCCEEEEcCCC
Q 026360           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDT----MLP--KCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e----ll~--~aDiVvl~lp~  102 (240)
                      .|++|.|.|. |.+|..+++.++..|++|++.++++...+.++++|....     .+..+    ...  ..|+++.++..
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~G~  249 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLAN  249 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCHH
T ss_pred             CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCCCEEEeCCCchHHHHHHHHcCCCCcEEEEECCCh
Confidence            5899999997 999999999999999999999987555555555664311     11111    111  46777666541


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEEcC
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                        .   .+ ...++.++++..++.++
T Consensus       250 --~---~~-~~~~~~l~~~G~iv~~g  269 (351)
T 1yb5_A          250 --V---NL-SKDLSLLSHGGRVIVVG  269 (351)
T ss_dssp             --H---HH-HHHHHHEEEEEEEEECC
T ss_pred             --H---HH-HHHHHhccCCCEEEEEe
Confidence              1   11 24456667777777665

>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}

Probab=96.45  E-value=0.0048  Score=54.97  Aligned_cols=92  Identities=12%  Similarity=0.108  Sum_probs=61.3

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHH
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  115 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l  115 (240)
                      -.++-|+|.|.+|+++++.++.+|++|+++|+++..   +         + .+-+..+|-++..-|          .+.+
T Consensus       199 ~~~L~I~GaGhva~aLa~la~~lgf~V~v~D~R~~~---~---------~-~~~fp~a~~v~~~~p----------~~~~  255 (362)
T 3on5_A          199 KERLIIFGAGPDVPPLVTFASNVGFYTVVTDWRPNQ---C---------E-KHFFPDADEIIVDFP----------ADFL  255 (362)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHHTEEEEEEESCGGG---G---------C-GGGCTTCSEEEESCH----------HHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEECCCccc---c---------c-cccCCCceEEecCCH----------HHHH
Confidence            357999999999999999999999999999975421   1         1 111344555544433          1122


Q ss_pred             cc--CCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEE
Q 026360          116 AK--MKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYS  151 (240)
Q Consensus       116 ~~--mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~  151 (240)
                      ..  +.+++.+|=+.++.-.|...|..+|++ ...+.+
T Consensus       256 ~~~~~~~~t~vvv~TH~h~~D~~~L~~aL~~-~~~YiG  292 (362)
T 3on5_A          256 RKFLIRPDDFVLIMTHHFQKDQEILHFLLEK-ELRYIG  292 (362)
T ss_dssp             HHSCCCTTCEEEECCSCHHHHHHHHHHHSSS-CCSEEE
T ss_pred             hhcCCCCCeEEEEEeCCchhhHHHHHHHhcC-CCCEEE
Confidence            22  556777777777777787777777765 344333

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=96.45  E-value=0.0029  Score=55.66  Aligned_cols=97  Identities=16%  Similarity=0.180  Sum_probs=60.2

Q ss_pred             CCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCCh--hHHHhc-Ccee-----c---CCHHhhcCcCCEEEEcCCC
Q 026360           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QLEKET-GAKF-----E---EDLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~--~~~~~~-g~~~-----~---~~l~ell~~aDiVvl~lp~  102 (240)
                      .+++|.|.| .|.+|+.+++.|...|++|++.+|++...  ...... ++..     .   ++++++++.+|+|+.+...
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~   83 (352)
T 1xgk_A            4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS   83 (352)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCCC
Confidence            468899999 59999999999998999999999876443  111211 2221     1   1255678899999877653


Q ss_pred             ChhhhhcccHHHHccCCC-C--CEEEEcCCCc
Q 026360          103 TEKTRGMFDKDRIAKMKK-G--VLIVNNARGA  131 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~-g--ailIN~srg~  131 (240)
                      ............++.++. |  ..||++|...
T Consensus        84 ~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~  115 (352)
T 1xgk_A           84 QAGDEIAIGKDLADAAKRAGTIQHYIYSSMPD  115 (352)
T ss_dssp             TTSCHHHHHHHHHHHHHHHSCCSEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHcCCccEEEEeCCcc
Confidence            211111122333333322 2  4688888754

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.43  E-value=0.0023  Score=51.89  Aligned_cols=67  Identities=19%  Similarity=0.254  Sum_probs=47.5

Q ss_pred             CeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc-----Ccee-cCCHHhhcCcCCEEEEcCCCC
Q 026360           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-----GAKF-EEDLDTMLPKCDIVVVNTPLT  103 (240)
Q Consensus        37 ~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~-----g~~~-~~~l~ell~~aDiVvl~lp~~  103 (240)
                      ++|.|.| .|.||+.+++.|.+.|++|++.+|++.........     ++.. .+++.+++++.|+|+.+....
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~   74 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSG   74 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCT
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhcCCceEEEecccCCHHHHHHHHcCCCEEEECCcCC
Confidence            4789999 79999999999999999999999875322111110     1111 124556788999999888644

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=96.41  E-value=0.0078  Score=51.40  Aligned_cols=38  Identities=21%  Similarity=0.179  Sum_probs=34.2

Q ss_pred             cccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        32 ~~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      .++.||++.|.|. |.||+.+|+.|...|++|++.+++.
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~   81 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDE   81 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4589999999995 8999999999999999999998865

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.40  E-value=0.0032  Score=55.61  Aligned_cols=93  Identities=14%  Similarity=0.192  Sum_probs=62.2

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCC-------------------hhHHH----hc--Cce--ec
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMD-------------------PQLEK----ET--GAK--FE   83 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~-------------------~~~~~----~~--g~~--~~   83 (240)
                      ..|++++|.|||+|.+|..+|+.|...|. +++++|.....                   .+.+.    +.  ++.  ..
T Consensus        30 ~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~~~  109 (340)
T 3rui_A           30 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGV  109 (340)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEE
T ss_pred             HHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEEEE
Confidence            35899999999999999999999999997 58888864311                   11111    11  121  11


Q ss_pred             C---------------------CHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcC
Q 026360           84 E---------------------DLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus        84 ~---------------------~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      .                     +++++++++|+|+.++- +.+++..++..-..   .+..+|+.+
T Consensus       110 ~~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tD-n~~tR~lin~~c~~---~~~plI~aa  171 (340)
T 3rui_A          110 KLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD-SRESRWLPSLLSNI---ENKTVINAA  171 (340)
T ss_dssp             CCCCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCS-STGGGHHHHHHHHH---TTCEEEEEE
T ss_pred             eccccccCcccchhhhhcCCHHHHHhhhccCCEEEecCC-CHHHHHHHHHHHHH---cCCcEEEee
Confidence            1                     23577889999988875 55677777765443   344577764

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=96.39  E-value=0.0025  Score=55.81  Aligned_cols=66  Identities=24%  Similarity=0.355  Sum_probs=47.4

Q ss_pred             CCeEEEEc-cChHHHHHHHHhccCC--CEEEEEcCCCCChhHH---HhcC----cee---cCCHHhhcCcCCEEEEcCCC
Q 026360           36 GKTVGTVG-CGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQLE---KETG----AKF---EEDLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        36 g~~vgIIG-~G~iG~~~A~~l~~~G--~~V~~~d~~~~~~~~~---~~~g----~~~---~~~l~ell~~aDiVvl~lp~  102 (240)
                      .++|+|+| .|.+|..++..|...|  .+|..+|+.+. ....   ....    +..   .+++++.++++|+|+++.+.
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~-~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~   86 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA-PGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGV   86 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH-HHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc-HhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCc
Confidence            46899999 8999999999998777  68999997553 2111   1111    111   12567889999999999853

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=96.39  E-value=0.0093  Score=55.54  Aligned_cols=113  Identities=14%  Similarity=0.123  Sum_probs=74.1

Q ss_pred             cCCCeEEEEccChHHHH-HHHHhccCCCEEEEEcCCCCCh--hHHHhcCceec--CCHHhhcCcCCEEEEc--CC-CChh
Q 026360           34 LEGKTVGTVGCGRIGKL-LLQRLKPFNCNLLYHDRVKMDP--QLEKETGAKFE--EDLDTMLPKCDIVVVN--TP-LTEK  105 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~-~A~~l~~~G~~V~~~d~~~~~~--~~~~~~g~~~~--~~l~ell~~aDiVvl~--lp-~~~~  105 (240)
                      ..+++|-|||.|.+|.+ +|+.|+..|++|.++|....+.  +..++.|+...  .+.+.+..++|+||..  +| .+|.
T Consensus        17 ~~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~~~~G~~~~~~~~~~d~vV~Spgi~~~~p~   96 (524)
T 3hn7_A           17 FQGMHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGVTIEEGYLIAHLQPAPDLVVVGNAMKRGMDV   96 (524)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCEEEESCCGGGGCSCCSEEEECTTCCTTSHH
T ss_pred             ecCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEECCCCHHHcCCCCCEEEECCCcCCCCHH
Confidence            46899999999999997 6999999999999999764322  33455676543  3445555779999886  33 2332


Q ss_pred             h-----h--hcccH-HHHcc--CCC-CCEEEEcCCCcccCHHHHHHHHHhCC
Q 026360          106 T-----R--GMFDK-DRIAK--MKK-GVLIVNNARGAIMDTQAVVDACSSGH  146 (240)
Q Consensus       106 t-----~--~~i~~-~~l~~--mk~-gailIN~srg~~vd~~aL~~aL~~g~  146 (240)
                      .     +  .++.+ +.+..  +++ ..+-|.-+.|+.=...-+...|+...
T Consensus        97 l~~a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G  148 (524)
T 3hn7_A           97 IEYMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAG  148 (524)
T ss_dssp             HHHHHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcC
Confidence            2     1  13333 34443  333 34556666788888888888888654

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=96.39  E-value=0.0025  Score=55.96  Aligned_cols=88  Identities=18%  Similarity=0.169  Sum_probs=59.3

Q ss_pred             CC--CeEEEEcc-ChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHh-cCceec-----CCHHhhcC-----cCCEEEEc
Q 026360           35 EG--KTVGTVGC-GRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKE-TGAKFE-----EDLDTMLP-----KCDIVVVN   99 (240)
Q Consensus        35 ~g--~~vgIIG~-G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~-~g~~~~-----~~l~ell~-----~aDiVvl~   99 (240)
                      .|  ++|.|.|. |.||..+++.++..|+ +|++.++++...+.+.+ +|....     .+..+.+.     ..|+++.+
T Consensus       158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~d~vi~~  237 (357)
T 2zb4_A          158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKDNVAEQLRESCPAGVDVYFDN  237 (357)
T ss_dssp             TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEEEETTTSCHHHHHHHHCTTCEEEEEES
T ss_pred             CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceEEecCchHHHHHHHHhcCCCCCEEEEC
Confidence            47  99999998 9999999999999999 99999986544444444 564311     12222221     36777777


Q ss_pred             CCCChhhhhcccHHHHccCCCCCEEEEcC
Q 026360          100 TPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       100 lp~~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      +..     . .....++.++++..+|.++
T Consensus       238 ~G~-----~-~~~~~~~~l~~~G~iv~~G  260 (357)
T 2zb4_A          238 VGG-----N-ISDTVISQMNENSHIILCG  260 (357)
T ss_dssp             CCH-----H-HHHHHHHTEEEEEEEEECC
T ss_pred             CCH-----H-HHHHHHHHhccCcEEEEEC
Confidence            651     1 1235566777777777776

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=96.36  E-value=0.0039  Score=52.59  Aligned_cols=38  Identities=21%  Similarity=0.058  Sum_probs=34.0

Q ss_pred             ccCCCeEEEEcc---ChHHHHHHHHhccCCCEEEEEcCCCC
Q 026360           33 DLEGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVKM   70 (240)
Q Consensus        33 ~l~g~~vgIIG~---G~iG~~~A~~l~~~G~~V~~~d~~~~   70 (240)
                      .+.||++.|.|.   |.||+.+|+.|...|++|++.+++..
T Consensus         3 ~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~   43 (275)
T 2pd4_A            3 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   43 (275)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            368999999997   69999999999999999999998753

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=96.35  E-value=0.0099  Score=52.33  Aligned_cols=30  Identities=27%  Similarity=0.410  Sum_probs=24.9

Q ss_pred             CeEEEEccChHHHHHHHHhcc-CCCEEEEEc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKP-FNCNLLYHD   66 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~-~G~~V~~~d   66 (240)
                      .+|||+|+|.||+.+++.+.. -+++|.+.+
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~   34 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAIN   34 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEE
T ss_pred             eEEEEEccCHHHHHHHHHHHcCCCcEEEEec
Confidence            489999999999999999865 467877665

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=96.34  E-value=0.011  Score=52.46  Aligned_cols=89  Identities=20%  Similarity=0.310  Sum_probs=57.1

Q ss_pred             CCCeEEEEc-cChHHHHHHHHhccCC-CEEEEEcCCCCChhHHHh------cCceec-CCHHhhcCcCCEEEEcCCCChh
Q 026360           35 EGKTVGTVG-CGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKE------TGAKFE-EDLDTMLPKCDIVVVNTPLTEK  105 (240)
Q Consensus        35 ~g~~vgIIG-~G~iG~~~A~~l~~~G-~~V~~~d~~~~~~~~~~~------~g~~~~-~~l~ell~~aDiVvl~lp~~~~  105 (240)
                      .-.+||||| .|.+|+.+.+.|...- .++..+...........+      ...... .+.++++.++|++++|+|..  
T Consensus        12 ~~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~~~~~~~~~~~Dvvf~alp~~--   89 (351)
T 1vkn_A           12 HMIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAG--   89 (351)
T ss_dssp             CCEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTT--
T ss_pred             ceeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccCceEEeCCHHHhhcCCCEEEECCCcH--
Confidence            346899998 6999999999998764 466655432211111110      112111 24556667899999999933  


Q ss_pred             hhhcccHHHHccCCCCCEEEEcCCC
Q 026360          106 TRGMFDKDRIAKMKKGVLIVNNARG  130 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailIN~srg  130 (240)
                          ...+....+ .|+.+||.|.-
T Consensus        90 ----~s~~~~~~~-~g~~VIDlSsd  109 (351)
T 1vkn_A           90 ----ASYDLVREL-KGVKIIDLGAD  109 (351)
T ss_dssp             ----HHHHHHTTC-CSCEEEESSST
T ss_pred             ----HHHHHHHHh-CCCEEEECChh
Confidence                344555666 79999999964

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=96.34  E-value=0.0038  Score=57.11  Aligned_cols=108  Identities=17%  Similarity=0.170  Sum_probs=65.3

Q ss_pred             CCeEEEEccChHHHHHHHHhcc----------CCCEEE-EEcCCCCChhHHHhcCceecCCHHhhcC--cCCEEEEcCCC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKP----------FNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPL  102 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~----------~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDiVvl~lp~  102 (240)
                      -.+|||+|+|.||+.+++.+..          .+.+|. ++|++....... ..+....++++++++  +.|+|+.++|.
T Consensus        10 ~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~-~~~~~~~~d~~ell~d~diDvVve~tp~   88 (444)
T 3mtj_A           10 PIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEAL-AGGLPLTTNPFDVVDDPEIDIVVELIGG   88 (444)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHH-HTTCCEESCTHHHHTCTTCCEEEECCCS
T ss_pred             cccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhh-cccCcccCCHHHHhcCCCCCEEEEcCCC
Confidence            3589999999999999877653          456655 445543222211 124455678999986  47999999985


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEEcCCCccc-CHHHHHHHHHhCCcc
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVNNARGAIM-DTQAVVDACSSGHIA  148 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN~srg~~v-d~~aL~~aL~~g~i~  148 (240)
                      .+....+    ....++.|.-++..--+... ..++|.++.++.+..
T Consensus        89 ~~~h~~~----~~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~  131 (444)
T 3mtj_A           89 LEPAREL----VMQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVM  131 (444)
T ss_dssp             STTHHHH----HHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             chHHHHH----HHHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCe
Confidence            3221222    12345566656644332222 235777877776665

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=96.33  E-value=0.0026  Score=56.09  Aligned_cols=87  Identities=16%  Similarity=0.170  Sum_probs=59.7

Q ss_pred             CCCeEEEEccChHHHHHHHHhccC-CCEEEEEcCCCCChhHHHhcCceec----CCH----HhhcC--cCCEEEEcCCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPF-NCNLLYHDRVKMDPQLEKETGAKFE----EDL----DTMLP--KCDIVVVNTPLT  103 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~-G~~V~~~d~~~~~~~~~~~~g~~~~----~~l----~ell~--~aDiVvl~lp~~  103 (240)
                      .|.+|.|+|.|.+|...++.++.. |++|++.++++.+.+.++++|+..+    +++    .++..  ..|+|+-++...
T Consensus       186 ~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~v~~~~~g~g~Dvvid~~G~~  265 (359)
T 1h2b_A          186 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQ  265 (359)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCEEEeccchHHHHHHHHhCCCCCcEEEECCCCc
Confidence            588999999999999999999999 9999999987656667777776422    111    12221  478888887632


Q ss_pred             h--hhhhcccHHHHccCCCCCEEEEcC
Q 026360          104 E--KTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       104 ~--~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      +  ...     ..++.  ++..++.++
T Consensus       266 ~~~~~~-----~~~~~--~~G~~v~~g  285 (359)
T 1h2b_A          266 ATVDYT-----PYLLG--RMGRLIIVG  285 (359)
T ss_dssp             HHHHHG-----GGGEE--EEEEEEECC
T ss_pred             hHHHHH-----HHhhc--CCCEEEEEe
Confidence            1  111     22333  666777775

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=96.31  E-value=0.0094  Score=51.96  Aligned_cols=101  Identities=23%  Similarity=0.315  Sum_probs=61.4

Q ss_pred             CeEEEEc-cChHHHHHHHHhcc---CCCEEEEEcCCCCChhHHHh---cCc--eec----CCHHhhcCcCCEEEEcCCCC
Q 026360           37 KTVGTVG-CGRIGKLLLQRLKP---FNCNLLYHDRVKMDPQLEKE---TGA--KFE----EDLDTMLPKCDIVVVNTPLT  103 (240)
Q Consensus        37 ~~vgIIG-~G~iG~~~A~~l~~---~G~~V~~~d~~~~~~~~~~~---~g~--~~~----~~l~ell~~aDiVvl~lp~~  103 (240)
                      +||+|+| .|.+|..++..|..   +..++..+|..+.....+.+   ...  ...    ++..+.+++||+|+++.+..
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~~   80 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVA   80 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCCC
Confidence            5899999 89999999998864   44579999986521111111   111  111    24567889999999987532


Q ss_pred             hh---h--------hhccc--HHHHccCCCCCEEEEcCCCcccCHHHHH
Q 026360          104 EK---T--------RGMFD--KDRIAKMKKGVLIVNNARGAIMDTQAVV  139 (240)
Q Consensus       104 ~~---t--------~~~i~--~~~l~~mk~gailIN~srg~~vd~~aL~  139 (240)
                      ..   +        ..++.  .+.+....|++++++++  .++|.-..+
T Consensus        81 rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvt--NPvd~~t~~  127 (312)
T 3hhp_A           81 RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT--NPVNTTVAI  127 (312)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECS--SCHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEec--CcchhHHHH
Confidence            11   1        11111  11233346889999996  455554443

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=96.31  E-value=0.0063  Score=52.66  Aligned_cols=93  Identities=14%  Similarity=0.194  Sum_probs=55.8

Q ss_pred             CeEEEEc-cChHHHHHHHHhccCCC--EEEEEcC--CCCChhH-HHhc--------CceecCCHHhhcCcCCEEEEcCCC
Q 026360           37 KTVGTVG-CGRIGKLLLQRLKPFNC--NLLYHDR--VKMDPQL-EKET--------GAKFEEDLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        37 ~~vgIIG-~G~iG~~~A~~l~~~G~--~V~~~d~--~~~~~~~-~~~~--------g~~~~~~l~ell~~aDiVvl~lp~  102 (240)
                      +||+|+| .|.+|..++..|...|.  ++..+|+  .....+. ..++        .+....+..+.++++|+|+++...
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~ag~   80 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGI   80 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEcCCC
Confidence            4899999 99999999999877665  6888998  4311111 1110        111111225679999999998753


Q ss_pred             Chh---hhh-------cccH---HHHccCCCCCEEEEcCC
Q 026360          103 TEK---TRG-------MFDK---DRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       103 ~~~---t~~-------~i~~---~~l~~mk~gailIN~sr  129 (240)
                      ...   ++.       -+..   +.+....|++++++++.
T Consensus        81 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SN  120 (303)
T 1o6z_A           81 PRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN  120 (303)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence            221   000       0111   23334478899999754

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=96.29  E-value=0.0067  Score=53.11  Aligned_cols=94  Identities=16%  Similarity=0.124  Sum_probs=59.4

Q ss_pred             CCeEEEEcc-ChHHHHHHHHhccCCC-------EEEEEcCC----CCChhH----HHh--c----CceecCCHHhhcCcC
Q 026360           36 GKTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRV----KMDPQL----EKE--T----GAKFEEDLDTMLPKC   93 (240)
Q Consensus        36 g~~vgIIG~-G~iG~~~A~~l~~~G~-------~V~~~d~~----~~~~~~----~~~--~----g~~~~~~l~ell~~a   93 (240)
                      .++|+|+|. |.+|..++..|...|+       +|..+|+.    ....+.    ...  .    .+....++.+.+++|
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~a   84 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDA   84 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTTC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCCC
Confidence            468999997 9999999999987775       79999986    211110    111  0    122235788999999


Q ss_pred             CEEEEcCCCChh---hhh-------cccH---HHHccC-CCCCEEEEcCC
Q 026360           94 DIVVVNTPLTEK---TRG-------MFDK---DRIAKM-KKGVLIVNNAR  129 (240)
Q Consensus        94 DiVvl~lp~~~~---t~~-------~i~~---~~l~~m-k~gailIN~sr  129 (240)
                      |+|+.+......   ++.       -+..   +.+... +|++.+|+++.
T Consensus        85 D~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SN  134 (329)
T 1b8p_A           85 DVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGN  134 (329)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccC
Confidence            999988643211   100       0111   123333 48899999983

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=96.27  E-value=0.0071  Score=55.69  Aligned_cols=35  Identities=14%  Similarity=0.221  Sum_probs=27.7

Q ss_pred             CCeEEEEccChHHHHHHHHhcc-CCC---EEEEEcCCCC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKP-FNC---NLLYHDRVKM   70 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~-~G~---~V~~~d~~~~   70 (240)
                      .++|.|||+|.||+.+|..+.. .++   +|++.|+...
T Consensus        13 ~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~   51 (480)
T 2ph5_A           13 KNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGT   51 (480)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchh
Confidence            3468999999999999998865 455   6888887643

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=96.26  E-value=0.031  Score=51.14  Aligned_cols=134  Identities=12%  Similarity=0.090  Sum_probs=87.9

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCC---EEEEEcCCC---CChhHH-------------HhcCceecCCHHhhcC
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC---NLLYHDRVK---MDPQLE-------------KETGAKFEEDLDTMLP   91 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~---~V~~~d~~~---~~~~~~-------------~~~g~~~~~~l~ell~   91 (240)
                      +..|.+.+|.|.|.|..|..+|+.+...|.   +++.+|+..   ...+..             ....-....++.|+++
T Consensus       214 gk~l~d~riV~~GAGaAGigia~ll~~~G~~~~~i~l~D~~Gli~~~R~~l~~~~~~~~k~~~A~~~n~~~~~~L~eav~  293 (487)
T 3nv9_A          214 KKDIHECRMVFIGAGSSNTTCLRLIVTAGADPKKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAEACV  293 (487)
T ss_dssp             TCCGGGCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEETTEECCTTCHHHHHCGGGHHHHHHHHHSCTTCCCSHHHHHT
T ss_pred             CCChhhcEEEEECCCHHHHHHHHHHHHcCCCcccEEEEeccccccCCcchhhhhcccHHHHHHHHhcccccCCCHHHHHh
Confidence            567899999999999999999999999998   699999763   111111             1111112358999999


Q ss_pred             cCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCCCCCCC
Q 026360           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN  171 (240)
Q Consensus        92 ~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~n  171 (240)
                      .+|+++=+.- .  ..+.+.++.++.|.+.++|.-.|....  |-.=.++.+.|....| .   ...+.|     -+..|
T Consensus       294 ~adVlIG~S~-~--~pg~ft~e~V~~Ma~~PIIFaLSNPtp--Ei~pe~A~~~G~aIvA-T---Grsd~P-----nQ~NN  359 (487)
T 3nv9_A          294 GADVLISLST-P--GPGVVKAEWIKSMGEKPIVFCCANPVP--EIYPYEAKEAGAYIVA-T---GRGDFP-----NQVNN  359 (487)
T ss_dssp             TCSEEEECCC-S--SCCCCCHHHHHTSCSSCEEEECCSSSC--SSCHHHHHHTTCSEEE-E---SCTTSS-----SBCCG
T ss_pred             cCCEEEEecc-c--CCCCCCHHHHHhhcCCCEEEECCCCCc--cCCHHHHHHhCCEEEE-E---CCCCCc-----ccCcc
Confidence            9997754431 0  137899999999999999999997653  2222233345663322 1   111111     14567


Q ss_pred             eEEcCCC
Q 026360          172 QAMTPHV  178 (240)
Q Consensus       172 v~~TPH~  178 (240)
                      +++-|=+
T Consensus       360 ~liFPGI  366 (487)
T 3nv9_A          360 SVGFPGI  366 (487)
T ss_dssp             GGTHHHH
T ss_pred             eeEcchh
Confidence            7777755

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=96.26  E-value=0.014  Score=51.70  Aligned_cols=30  Identities=30%  Similarity=0.495  Sum_probs=25.7

Q ss_pred             CeEEEEccChHHHHHHHHhccC-CCEEEEEc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLLYHD   66 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~-G~~V~~~d   66 (240)
                      .+|||+|+|.||+.+.+.|... .++|.+.+
T Consensus        18 ikVgI~G~G~iGr~llR~l~~~p~veivain   48 (354)
T 3cps_A           18 GTLGINGFGRIGRLVLRACMERNDITVVAIN   48 (354)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCSSCEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHcCCCeEEEEec
Confidence            4899999999999999998765 67877665

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.26  E-value=0.0035  Score=50.80  Aligned_cols=65  Identities=17%  Similarity=0.142  Sum_probs=47.3

Q ss_pred             CeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCce-------ecCCHHhhcCcCCEEEEcCCC
Q 026360           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-------FEEDLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        37 ~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-------~~~~l~ell~~aDiVvl~lp~  102 (240)
                      ++|.|.| .|.+|+.+++.|...|++|++.+|++....... .++.       ..++++++++++|+|+.+...
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~   77 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIEN-EHLKVKKADVSSLDEVCEVCKGADAVISAFNP   77 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCC-TTEEEECCCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhcc-CceEEEEecCCCHHHHHHHhcCCCEEEEeCcC
Confidence            6899999 599999999999999999999998753221110 1111       113456788899999888754

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=96.24  E-value=0.0059  Score=51.24  Aligned_cols=65  Identities=15%  Similarity=0.249  Sum_probs=47.6

Q ss_pred             CeEEEEcc-ChHHHHHHHHhccC--CCEEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCcCCEEEEcCC
Q 026360           37 KTVGTVGC-GRIGKLLLQRLKPF--NCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        37 ~~vgIIG~-G~iG~~~A~~l~~~--G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~ell~~aDiVvl~lp  101 (240)
                      |+|.|.|. |.+|+.+++.|...  |++|++.+|++.........++..       .++++++++.+|+|+.+..
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~   75 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISG   75 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCC
Confidence            47889996 99999999999988  999999998764443332233321       1245577889999987765

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=96.23  E-value=0.0043  Score=54.50  Aligned_cols=111  Identities=17%  Similarity=0.173  Sum_probs=64.5

Q ss_pred             CeEEEEccChHHHHHHHHhccC--------CCEEE-EEcCCCCChhH-------HH---hcCce-ecC---CHHhhc-Cc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPF--------NCNLL-YHDRVKMDPQL-------EK---ETGAK-FEE---DLDTML-PK   92 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~--------G~~V~-~~d~~~~~~~~-------~~---~~g~~-~~~---~l~ell-~~   92 (240)
                      .+|||||+|.||+.+++.+...        +++|. ++|++......       ..   ..++. ..+   ++++++ .+
T Consensus         7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll~~~   86 (331)
T 3c8m_A            7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEALARD   86 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHHHSS
T ss_pred             EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHhCCC
Confidence            5899999999999999888653        35654 55665422111       11   11221 233   788887 45


Q ss_pred             CCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcc-cCHHHHHHHHHhCCcc
Q 026360           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI-MDTQAVVDACSSGHIA  148 (240)
Q Consensus        93 aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~-vd~~aL~~aL~~g~i~  148 (240)
                      .|+|+.++|.. .+...-..-..+.++.|.-+|...-..+ ..-+.|.++.++.+..
T Consensus        87 iDvVv~~t~~~-~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv~  142 (331)
T 3c8m_A           87 FDIVVDATPAS-ADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNNRR  142 (331)
T ss_dssp             CSEEEECSCCC-SSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCC
T ss_pred             CCEEEECCCCC-CccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCCE
Confidence            89999999964 1111111123344566766766544333 2345677777665544

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=96.23  E-value=0.011  Score=50.79  Aligned_cols=66  Identities=15%  Similarity=0.157  Sum_probs=47.0

Q ss_pred             CCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCcCCEEEEcCC
Q 026360           36 GKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        36 g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~ell~~aDiVvl~lp  101 (240)
                      .++|.|.| .|.||+.+++.|...|++|++.++++...+.....++..       .++++++++.+|+|+.+..
T Consensus        13 ~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~   86 (342)
T 2x4g_A           13 HVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAG   86 (342)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence            35899999 599999999999999999999998764433222223321       1235577888999988765

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=96.19  E-value=0.0099  Score=50.34  Aligned_cols=66  Identities=17%  Similarity=0.056  Sum_probs=48.7

Q ss_pred             CCeEEEEcc-ChHHHHHHHHhccCC-CEEEEEcCCCCChh--HHHhcCceec-------CCHHhhcCcCCEEEEcCC
Q 026360           36 GKTVGTVGC-GRIGKLLLQRLKPFN-CNLLYHDRVKMDPQ--LEKETGAKFE-------EDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        36 g~~vgIIG~-G~iG~~~A~~l~~~G-~~V~~~d~~~~~~~--~~~~~g~~~~-------~~l~ell~~aDiVvl~lp  101 (240)
                      .++|.|.|. |.+|+.+++.|.+.| ++|.+.+|++....  .....++..+       ++++++++.+|+|+.+.+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~   81 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN   81 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence            578999997 999999999999888 99999998764432  1122344321       245567889999998875

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=96.17  E-value=0.0038  Score=54.95  Aligned_cols=102  Identities=13%  Similarity=0.181  Sum_probs=61.4

Q ss_pred             CeEEEEccChHHHHHHHHhccC---------CCEEE-EEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhh
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPF---------NCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKT  106 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~---------G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t  106 (240)
                      .+|||||+|.||+.+++.+...         +.+|. ++|++..+.... .. ....+++++++ +.|+|+.|+|.....
T Consensus         4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~-~~-~~~~~d~~~ll-~iDvVve~t~~~~~a   80 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAI-PQ-ELLRAEPFDLL-EADLVVEAMGGVEAP   80 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSS-CG-GGEESSCCCCT-TCSEEEECCCCSHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhcc-Cc-ccccCCHHHHh-CCCEEEECCCCcHHH
Confidence            4799999999999999988654         45654 556654322111 01 12345888888 999999999854321


Q ss_pred             hhcccHHHHccCCCCCEEEEcCCCcc-cCHHHHHHHHHhC
Q 026360          107 RGMFDKDRIAKMKKGVLIVNNARGAI-MDTQAVVDACSSG  145 (240)
Q Consensus       107 ~~~i~~~~l~~mk~gailIN~srg~~-vd~~aL~~aL~~g  145 (240)
                      ...    ..+.++.|.-+|...-..+ -.-+.|.++.+++
T Consensus        81 ~~~----~~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~  116 (332)
T 2ejw_A           81 LRL----VLPALEAGIPLITANKALLAEAWESLRPFAEEG  116 (332)
T ss_dssp             HHH----HHHHHHTTCCEEECCHHHHHHSHHHHHHHHHTT
T ss_pred             HHH----HHHHHHcCCeEEECCchhHHHHHHHHHHHHHhC
Confidence            111    1223455555555322222 2556677777666

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.14  E-value=0.0036  Score=54.17  Aligned_cols=72  Identities=13%  Similarity=0.078  Sum_probs=46.2

Q ss_pred             ccccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhH-HHhcCceecCCHHhhcCcCCEEEEcCCC
Q 026360           31 AYDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        31 ~~~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~-~~~~g~~~~~~l~ell~~aDiVvl~lp~  102 (240)
                      ..+..+|+|.|.|. |.||+.+++.|...|++|++.++++..... .....+....+++++++.+|+|+.+...
T Consensus        14 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~   87 (347)
T 4id9_A           14 LVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAIMGVSAVLHLGAF   87 (347)
T ss_dssp             -------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred             ccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHHhCCCEEEECCcc
Confidence            45688999999996 999999999999999999999987533100 0001111123456778899999877643

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=96.14  E-value=0.0068  Score=53.46  Aligned_cols=89  Identities=15%  Similarity=0.219  Sum_probs=53.9

Q ss_pred             CeEEEEc-cChHHHHHHHHhcc-CCCEEEEEc-CCC--CChh-HH------Hhc-CceecC--CHHhhcCcCCEEEEcCC
Q 026360           37 KTVGTVG-CGRIGKLLLQRLKP-FNCNLLYHD-RVK--MDPQ-LE------KET-GAKFEE--DLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        37 ~~vgIIG-~G~iG~~~A~~l~~-~G~~V~~~d-~~~--~~~~-~~------~~~-g~~~~~--~l~ell~~aDiVvl~lp  101 (240)
                      .+|+|+| .|.+|+.+.+.|.. -.+++..+. +++  .... ..      ... .....+  +.+++++++|+|++|+|
T Consensus         5 ~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvvf~a~p   84 (337)
T 3dr3_A            5 LNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLATA   84 (337)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEEEECSC
T ss_pred             eEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEEEECCC
Confidence            5899999 69999999999987 456766553 321  1111 11      111 122111  45555589999999999


Q ss_pred             CChhhhhcccHHHHccCCCCCEEEEcCCC
Q 026360          102 LTEKTRGMFDKDRIAKMKKGVLIVNNARG  130 (240)
Q Consensus       102 ~~~~t~~~i~~~~l~~mk~gailIN~srg  130 (240)
                      ... ++... ..   .++.|+.+|+.|..
T Consensus        85 ~~~-s~~~~-~~---~~~~g~~vIDlSa~  108 (337)
T 3dr3_A           85 HEV-SHDLA-PQ---FLEAGCVVFDLSGA  108 (337)
T ss_dssp             HHH-HHHHH-HH---HHHTTCEEEECSST
T ss_pred             hHH-HHHHH-HH---HHHCCCEEEEcCCc
Confidence            321 12211 12   24678999999864

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=96.13  E-value=0.0066  Score=51.93  Aligned_cols=38  Identities=16%  Similarity=0.101  Sum_probs=33.6

Q ss_pred             cccCCCeEEEEcc-Ch--HHHHHHHHhccCCCEEEEEcCCC
Q 026360           32 YDLEGKTVGTVGC-GR--IGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        32 ~~l~g~~vgIIG~-G~--iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      ..+.||++.|.|. |.  ||+.+|+.|...|++|++.+++.
T Consensus        27 ~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~   67 (293)
T 3grk_A           27 GLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGD   67 (293)
T ss_dssp             CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSH
T ss_pred             ccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCH
Confidence            4689999999997 45  99999999999999999998863

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.11  E-value=0.012  Score=50.90  Aligned_cols=70  Identities=23%  Similarity=0.218  Sum_probs=50.0

Q ss_pred             ccCCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhH-HH---h-------cCcee-------cCCHHhhcCcC
Q 026360           33 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-EK---E-------TGAKF-------EEDLDTMLPKC   93 (240)
Q Consensus        33 ~l~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~-~~---~-------~g~~~-------~~~l~ell~~a   93 (240)
                      .+.+++|.|.| .|.||+.+++.|...|++|++.++....... ..   .       .++..       .++++++++.+
T Consensus        22 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  101 (351)
T 3ruf_A           22 IFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV  101 (351)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC
T ss_pred             CCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC
Confidence            46789999999 5999999999999999999999986543221 11   0       12221       12355778899


Q ss_pred             CEEEEcCCC
Q 026360           94 DIVVVNTPL  102 (240)
Q Consensus        94 DiVvl~lp~  102 (240)
                      |+|+.+...
T Consensus       102 d~Vih~A~~  110 (351)
T 3ruf_A          102 DHVLHQAAL  110 (351)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCcc
Confidence            999877653

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=96.09  E-value=0.0052  Score=52.62  Aligned_cols=66  Identities=24%  Similarity=0.361  Sum_probs=46.8

Q ss_pred             CCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCC-CC--hhHH------HhcCceec-------CCHHhhcCcCCEEEE
Q 026360           36 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK-MD--PQLE------KETGAKFE-------EDLDTMLPKCDIVVV   98 (240)
Q Consensus        36 g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~-~~--~~~~------~~~g~~~~-------~~l~ell~~aDiVvl   98 (240)
                      .++|.|.|. |.+|+.+++.|...|++|.+.+|++ ..  .+..      ...++..+       +++.++++.+|+|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi~   83 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVIS   83 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            468999995 9999999999999999999999865 21  1111      12243221       235577888898888


Q ss_pred             cCC
Q 026360           99 NTP  101 (240)
Q Consensus        99 ~lp  101 (240)
                      +..
T Consensus        84 ~a~   86 (321)
T 3c1o_A           84 ALP   86 (321)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            775

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=96.08  E-value=0.004  Score=51.17  Aligned_cols=65  Identities=20%  Similarity=0.181  Sum_probs=43.1

Q ss_pred             CeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcC----cCCEEEEcCC
Q 026360           37 KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP----KCDIVVVNTP  101 (240)
Q Consensus        37 ~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~----~aDiVvl~lp  101 (240)
                      |++.|.|. |.||+.+++.|...|++|++.++++...+......+....+++++++    ..|+|+.+..
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~vi~~Ag   71 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGGVLDGLVCCAG   71 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHHHHTTCCSEEEECCC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccccccCCcccHHHHHHHHHHcCCCccEEEECCC
Confidence            47889985 99999999999999999999998754321100000111123344443    7899988764

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=96.08  E-value=0.011  Score=50.04  Aligned_cols=37  Identities=19%  Similarity=0.161  Sum_probs=33.6

Q ss_pred             ccCCCeEEEEcc---ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           33 DLEGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        33 ~l~g~~vgIIG~---G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      .+.||++.|.|.   |.||+.+|+.|...|++|++.+++.
T Consensus        18 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~   57 (285)
T 2p91_A           18 LLEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATP   57 (285)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCH
Confidence            488999999997   6999999999999999999999865

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.06  E-value=0.0063  Score=51.16  Aligned_cols=37  Identities=30%  Similarity=0.397  Sum_probs=33.3

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      ++.||++.|.|. |.||+.+|+.|.+.|++|++.+++.
T Consensus         3 ~l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~   40 (263)
T 2a4k_A            3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREE   40 (263)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            478999999995 8999999999999999999999864

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=96.06  E-value=0.0072  Score=56.48  Aligned_cols=87  Identities=17%  Similarity=0.171  Sum_probs=58.1

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc---CceecCCHH-hhcCcCCEEEEcCCCChhhhhcccH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET---GAKFEEDLD-TMLPKCDIVVVNTPLTEKTRGMFDK  112 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~---g~~~~~~l~-ell~~aDiVvl~lp~~~~t~~~i~~  112 (240)
                      +++.|+|+|.+|+.+|+.|...|.+|++.|.++...+.....   .....+.++ .-++++|.++++++.++  .+++..
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d~--~ni~~~  426 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDHVVVYGDATVGQTLRQAGIDRASGIIVTTNDDS--TNIFLT  426 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSSCEEESCSSSSTHHHHHTTTSCSEEEECCSCHH--HHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcCCEEEeCCCCHHHHHhcCccccCEEEEECCCch--HHHHHH
Confidence            789999999999999999999999999999876543322110   001111222 23688999999998653  334444


Q ss_pred             HHHccCCCCCEEE
Q 026360          113 DRIAKMKKGVLIV  125 (240)
Q Consensus       113 ~~l~~mk~gailI  125 (240)
                      ...+.+.+...+|
T Consensus       427 ~~ak~l~~~~~ii  439 (565)
T 4gx0_A          427 LACRHLHSHIRIV  439 (565)
T ss_dssp             HHHHHHCSSSEEE
T ss_pred             HHHHHHCCCCEEE
Confidence            5556666664343

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=96.06  E-value=0.007  Score=52.32  Aligned_cols=38  Identities=26%  Similarity=0.342  Sum_probs=33.6

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCC
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK   69 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~   69 (240)
                      ..|++++|.|||+|.+|..+|+.|...|. ++.++|.+.
T Consensus        32 ~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           32 EKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            46899999999999999999999998886 688888654

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=96.05  E-value=0.011  Score=51.97  Aligned_cols=69  Identities=20%  Similarity=0.154  Sum_probs=49.3

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCcCCEEEEcCC
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~ell~~aDiVvl~lp  101 (240)
                      ...+++|.|.|. |.||+.+++.|...|++|++.+++..........++..       ..+++++++.+|+|+.+..
T Consensus        26 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~  102 (379)
T 2c5a_A           26 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAA  102 (379)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             cccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECce
Confidence            346789999997 99999999999999999999998654322111112221       1235577889999987764

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=96.04  E-value=0.0071  Score=51.53  Aligned_cols=65  Identities=11%  Similarity=0.178  Sum_probs=40.0

Q ss_pred             CCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCc--CCEEEEcCC
Q 026360           36 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPK--CDIVVVNTP  101 (240)
Q Consensus        36 g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~--aDiVvl~lp  101 (240)
                      +++|.|.|. |.||+.+++.|...|++|++.+++..... ....++....+++++++.  .|+|+.+..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~Dl~d~~~~~~~~~~~~~d~vih~A~   69 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPK-FEQVNLLDSNAVHHIIHDFQPHVIVHCAA   69 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC-------------------CHHHHHHHCCSEEEECC-
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCC-eEEecCCCHHHHHHHHHhhCCCEEEECCc
Confidence            689999996 99999999999999999999997542211 111122222345566664  899987764

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=96.03  E-value=0.023  Score=47.80  Aligned_cols=50  Identities=20%  Similarity=0.357  Sum_probs=36.5

Q ss_pred             CeEEEEcc-ChHHHHHHHHhccC-CCEEE-EEcCCCCChhHHHhcCceecCCHHhhcC-cCCEEEEcCC
Q 026360           37 KTVGTVGC-GRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLP-KCDIVVVNTP  101 (240)
Q Consensus        37 ~~vgIIG~-G~iG~~~A~~l~~~-G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~-~aDiVvl~lp  101 (240)
                      ++|+|+|+ |.||+.+++.+... ++++. ++|+.               +++++++. .+|+|+-+.+
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~---------------~dl~~~~~~~~DvvIDfT~   54 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG---------------DPLSLLTDGNTEVVIDFTH   54 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT---------------CCTHHHHHTTCCEEEECSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC---------------CCHHHHhccCCcEEEEccC
Confidence            47999996 99999999998755 89876 44542               24555553 7898885554

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=96.00  E-value=0.0087  Score=55.28  Aligned_cols=112  Identities=15%  Similarity=0.132  Sum_probs=72.9

Q ss_pred             CCCeEEEEccChHHHH-HHHHhccCCCEEEEEcCCCCC-hhHHHhcCceecC-CHHhhcCcCCEEEEc--CCC-Chhh--
Q 026360           35 EGKTVGTVGCGRIGKL-LLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFEE-DLDTMLPKCDIVVVN--TPL-TEKT--  106 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~-~A~~l~~~G~~V~~~d~~~~~-~~~~~~~g~~~~~-~l~ell~~aDiVvl~--lp~-~~~t--  106 (240)
                      ..++|.|||+|..|.+ +|+.|+..|++|.++|....+ .+..++.|+.... .-.+.+..+|+|+..  +|. +|..  
T Consensus        21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~Spgi~~~~p~~~~  100 (494)
T 4hv4_A           21 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHHRPENVLDASVVVVSTAISADNPEIVA  100 (494)
T ss_dssp             -CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEECTTSCTTCHHHHH
T ss_pred             cCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEECCCCCCCCHHHHH
Confidence            3689999999999996 899999999999999975432 1234456765431 122346789999876  332 2321  


Q ss_pred             ---h--hccc-HHHHcc-CCCC-CEEEEcCCCcccCHHHHHHHHHhCC
Q 026360          107 ---R--GMFD-KDRIAK-MKKG-VLIVNNARGAIMDTQAVVDACSSGH  146 (240)
Q Consensus       107 ---~--~~i~-~~~l~~-mk~g-ailIN~srg~~vd~~aL~~aL~~g~  146 (240)
                         +  .++. .+.+.. ++.. .+-|.-+.|+.=...-+...|++..
T Consensus       101 a~~~gi~v~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g  148 (494)
T 4hv4_A          101 AREARIPVIRRAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEAG  148 (494)
T ss_dssp             HHHTTCCEEEHHHHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHTT
T ss_pred             HHHCCCCEEcHHHHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHhcC
Confidence               1  1232 233333 3322 4566666788888888888888755

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=96.00  E-value=0.013  Score=51.89  Aligned_cols=38  Identities=24%  Similarity=0.365  Sum_probs=33.4

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCC
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK   69 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~   69 (240)
                      ..|++++|.|||+|.+|..+|+.|...|. ++.++|.+.
T Consensus       114 ~~L~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          114 DKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            35789999999999999999999999887 688888753

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=95.99  E-value=0.0038  Score=52.25  Aligned_cols=37  Identities=22%  Similarity=0.336  Sum_probs=33.6

Q ss_pred             ccCCCeEEEEcc---ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           33 DLEGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        33 ~l~g~~vgIIG~---G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      .+.||++.|.|.   |.||+.+|+.|...|++|++.+++.
T Consensus         5 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~   44 (261)
T 2wyu_A            5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE   44 (261)
T ss_dssp             CCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCG
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCH
Confidence            578999999997   6999999999999999999999865

>3kzn_A Aotcase, N-acetylornithine carbamoyltransferase; transcarbamylase, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: KCX AOR; 1.80A {Xanthomonas campestris PV} PDB: 3kzc_A* 3kzm_A* 3kzk_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 3l05_A* 3l02_A* 3m4n_A* 3l06_A* 3l04_A*

Probab=95.99  E-value=0.053  Score=48.10  Aligned_cols=69  Identities=17%  Similarity=0.213  Sum_probs=51.7

Q ss_pred             ccCCCeEEEEcc-------ChHHHHHHHHhccCCCEEEEEcCCC--C-ChhH-------HHhcC--ceecCCHHhhcCcC
Q 026360           33 DLEGKTVGTVGC-------GRIGKLLLQRLKPFNCNLLYHDRVK--M-DPQL-------EKETG--AKFEEDLDTMLPKC   93 (240)
Q Consensus        33 ~l~g~~vgIIG~-------G~iG~~~A~~l~~~G~~V~~~d~~~--~-~~~~-------~~~~g--~~~~~~l~ell~~a   93 (240)
                      +++|++++++|.       .++.++.+..+..+|++|.++.|.+  . ....       +.+.|  +....+++++++++
T Consensus       187 dl~g~kv~~~~~~~gd~~~~~Va~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~eav~~a  266 (359)
T 3kzn_A          187 DLRGKKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLCPTPDYILDERYMDWAAQNVAESGGSLQVSHDIDSAYAGA  266 (359)
T ss_dssp             CCTTCEEEEEECCCSSCCCSHHHHHHHHHHHHTTCEEEEECSSGGGCCCHHHHHHHHHHHHHHSCEEEEECCHHHHHTTC
T ss_pred             cccCCeEEEEEeecCCccccchhhhhHHHHHhccccEEEEecccccCCCHHHHHHHHHHHHhhCCCcccccCHHHHhcCC
Confidence            588999999875       3699999999999999999988742  1 1111       12223  34567999999999


Q ss_pred             CEEEEcCC
Q 026360           94 DIVVVNTP  101 (240)
Q Consensus        94 DiVvl~lp  101 (240)
                      |+|....-
T Consensus       267 Dvvyt~r~  274 (359)
T 3kzn_A          267 DVVYAKSW  274 (359)
T ss_dssp             SEEEEECC
T ss_pred             eEEEEEEE
Confidence            99987653

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=95.98  E-value=0.013  Score=48.70  Aligned_cols=42  Identities=14%  Similarity=0.080  Sum_probs=33.4

Q ss_pred             cccccCCCeEEEEc-cChHHHHHHHHhccCC---CEEEEEcCCCCC
Q 026360           30 RAYDLEGKTVGTVG-CGRIGKLLLQRLKPFN---CNLLYHDRVKMD   71 (240)
Q Consensus        30 ~~~~l~g~~vgIIG-~G~iG~~~A~~l~~~G---~~V~~~d~~~~~   71 (240)
                      ....+.++++.|.| .|.||+.+|+.|...|   ++|++.+++...
T Consensus        15 ~~~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~   60 (267)
T 1sny_A           15 VPRGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQ   60 (267)
T ss_dssp             -----CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTS
T ss_pred             cccCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhh
Confidence            34578999999999 5899999999999999   999999987644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	240
d2naca1	188	c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom	4e-36
d1gdha1	191	c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp	4e-30
d1ygya1	184	c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase	2e-25
d1sc6a1	188	c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase	3e-25
d1mx3a1	193	c.2.1.4 (A:126-318) Transcription corepressor CtbP	3e-23
d1j4aa1	197	c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lacto	8e-14
d1dxya1	199	c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydro	3e-13
d1qp8a1	181	c.2.1.4 (A:83-263) Putative formate dehydrogenase	2e-11
d1li4a1	163	c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolas	2e-06
d1vpda2	161	c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase	0.001
d1np3a2	182	c.2.1.6 (A:1-182) Class I ketol-acid reductoisomer	0.002

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score =  124 bits (311), Expect = 4e-36
 Identities = 88/178 (49%), Positives = 110/178 (61%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           IL LVRN+LP H     G WN+A     AYDLE   VGTV  GRIG  +L+RL PF+ +L
Sbjct: 11  ILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHL 70

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
            Y DR ++   +EKE    +    + M P CD+V +N PL  +T  M + + +   K+G 
Sbjct: 71  HYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGA 130

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
            IVN ARG + D  AV  A  SG +AGY+GDVW PQPAPKDHPWR MP   MTPH+SG
Sbjct: 131 YIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG 188

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score =  108 bits (271), Expect = 4e-30
 Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 2/179 (1%)

Query: 3   ILILVRNFLPGHHQVISGEWN-VAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCN 61
           +L   R    G   + +  W     +      L+ KT+G  G G IG+ L +R + F+ +
Sbjct: 13  LLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMD 72

Query: 62  LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKG 121
           + Y D  +     E    A F + LD++L       +N P T +TR  F+K  I  + +G
Sbjct: 73  IDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQG 132

Query: 122 VLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSG 180
            ++VN ARG ++D + VV A  +G +A    DV+  +P   +  +  +PN  + PH+  
Sbjct: 133 AIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNTFLFPHIGS 190

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 96.6 bits (239), Expect = 2e-25
 Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 5/176 (2%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L   R        +    W  +  +       GKTVG VG GRIG+L+ QR+  F   +
Sbjct: 13  LLAASRQIPAADASLREHTWKRSSFSGTEIF--GKTVGVVGLGRIGQLVAQRIAAFGAYV 70

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           + +D   + P    + G +     D +L + D + V+ P T +T G+ DK+ +AK K GV
Sbjct: 71  VAYDP-YVSPARAAQLGIELLSL-DDLLARADFISVHLPKTPETAGLIDKEALAKTKPGV 128

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHV 178
           +IVN ARG ++D  A+ DA + GH+     DV+  +P   D P   +    +TPH+
Sbjct: 129 IIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCT-DSPLFELAQVVVTPHL 183

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 95.8 bits (237), Expect = 3e-25
 Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 10/182 (5%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L+L+R     + +   G  N   +A  +++  GK +G +G G IG  L    +     +
Sbjct: 13  LLLLLRGVPEANAKAHRGVGN--KLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYV 70

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
            ++D     P       A   + L  +L   D+V ++ P    T+ M     I+ MK G 
Sbjct: 71  YFYDIENKLP----LGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGS 126

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA----PKDHPWRYMPNQAMTPHV 178
           L++N +RG ++D  A+ DA +S H+AG + DV+  +PA    P   P     N  +TPH+
Sbjct: 127 LLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHI 186

Query: 179 SG 180
            G
Sbjct: 187 GG 188

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 90.9 bits (224), Expect = 3e-23
 Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 7/182 (3%)

Query: 3   ILILVRNFLPGHHQVISGEW-----NVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKP 57
           IL L R     H  +  G        +  VA  A  + G+T+G +G GR+G+ +  R K 
Sbjct: 11  ILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKA 70

Query: 58  FNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAK 117
           F  N+L++D   +   +E+  G +    L  +L   D V ++  L E    + +   + +
Sbjct: 71  FGFNVLFYDP-YLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQ 129

Query: 118 MKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAP-KDHPWRYMPNQAMTP 176
           M++G  +VN ARG ++D +A+  A   G I G + DV   +P      P +  PN   TP
Sbjct: 130 MRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTP 189

Query: 177 HV 178
           H 
Sbjct: 190 HA 191

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 66.0 bits (159), Expect = 8e-14
 Identities = 46/191 (24%), Positives = 85/191 (44%), Gaps = 18/191 (9%)

Query: 1   MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNC 60
           ++   ++R       +V   +   A       ++  + VG VG G IG++ +Q ++ F  
Sbjct: 10  IQAARILRQDKAMDEKVARHDLRWAP--TIGREVRDQVVGVVGTGHIGQVFMQIMEGFGA 67

Query: 61  NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK 120
            ++ +D  +       E    + + LD +  + D++ ++ P       M + + IAKMK+
Sbjct: 68  KVITYDIFRNPEL---EKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQ 124

Query: 121 GVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRY------------ 168
            V+IVN +RG ++DT AV+    SG I GY+ DV+  +    +  W              
Sbjct: 125 DVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLI 184

Query: 169 -MPNQAMTPHV 178
             PN  +TP  
Sbjct: 185 ARPNVLVTPKT 195

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 64.1 bits (154), Expect = 3e-13
 Identities = 45/191 (23%), Positives = 86/191 (45%), Gaps = 18/191 (9%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
            L L+RN      Q+ +G++  AG  +   +L  +TVG +G G IG++ ++  K F   +
Sbjct: 13  TLYLLRNMGKVQAQLQAGDYEKAG-TFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKV 71

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
           + +D   M               L+ +  + D++ ++ P  E+   + ++     MK G 
Sbjct: 72  IAYDPYPMKGDHPD----FDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGA 127

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA-------------PKDHPWRYM 169
           +++N AR  ++DTQA++    SG +AG   D +  +               P       M
Sbjct: 128 IVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGM 187

Query: 170 PNQAMTPHVSG 180
           PN  ++PH++ 
Sbjct: 188 PNVVLSPHIAY 198

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 59.0 bits (141), Expect = 2e-11
 Identities = 37/179 (20%), Positives = 68/179 (37%), Gaps = 10/179 (5%)

Query: 3   ILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNL 62
           +L   +  +    ++  G++           ++G+ V  +G G IG  + + L      +
Sbjct: 12  LLAPYKRIIQYGEKMKRGDYGRD---VEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQV 68

Query: 63  LYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGV 122
               R   +         +F   L+  L +    V   PL + TRG+     +A M +  
Sbjct: 69  RGFSRTPKEGP------WRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDA 122

Query: 123 LIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW-NPQPAPKDHPWRYMPNQAMTPHVSG 180
           + VN  R  ++D   V+          ++ DVW       KD  +  +PN   TP V+G
Sbjct: 123 VFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAG 181

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 8/118 (6%)

Query: 30  RAYDLE--GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLD 87
           RA D+   GK     G G +GK   Q L+ F   ++  +   ++        A  E    
Sbjct: 16  RATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINA-----LQAAMEGYEV 70

Query: 88  TMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVN-NARGAIMDTQAVVDACSS 144
           T + +          T     +       +MK   ++ N       +D + + +    
Sbjct: 71  TTMDEACQEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVE 128

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 161

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

 Score = 35.9 bits (82), Expect = 0.001
 Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 2/133 (1%)

Query: 39  VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVV 98
           VG +G G +GK + + L     +L+  DR           GA+       +  +CD+++ 
Sbjct: 3   VGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIIT 62

Query: 99  NTPLTEKTRGMF--DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN 156
             P +   + +   +   I   K G ++++ +  A + ++ + DA  +  +      V  
Sbjct: 63  MLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSG 122

Query: 157 PQPAPKDHPWRYM 169
            +P   D     M
Sbjct: 123 GEPKAIDGTLSVM 135

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 35.6 bits (82), Expect = 0.002
 Identities = 27/163 (16%), Positives = 52/163 (31%), Gaps = 24/163 (14%)

Query: 34  LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE-DLDTMLPK 92
           ++GK V  +G G  G      LK    ++    R      + K      +  D+ T +  
Sbjct: 14  IQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLR-SGSATVAKAEAHGLKVADVKTAVAA 72

Query: 93  CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSG 152
            D+V++ TP  E    ++ ++    +KKG  +                A + G    Y+ 
Sbjct: 73  ADVVMILTP-DEFQGRLYKEEIEPNLKKGATL----------------AFAHGFSIHYNQ 115

Query: 153 DVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQVIVHFFPVF 195
                     D     +  +A    V    +    I     ++
Sbjct: 116 -----VVPRADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIY 153

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	240
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	100.0
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	100.0
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	100.0
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	100.0
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	100.0
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	100.0
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	100.0
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	100.0
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	99.7
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.68
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.62
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.6
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.55
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	99.55
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.49
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	99.31
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.3
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	99.29
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	99.21
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	99.1
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	99.09
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	99.03
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.93
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	98.93
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	98.93
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.92
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	98.91
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	98.76
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.74
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	98.69
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	98.63
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.6
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.58
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.56
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	98.53
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	98.53
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	98.44
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	98.36
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	98.35
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.35
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	98.25
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.17
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	98.17
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.16
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	98.16
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.16
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	98.14
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	98.1
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	98.09
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	98.02
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	98.01
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	98.0
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.98
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	97.98
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.93
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.92
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	97.9
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.89
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	97.89
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	97.88
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.79
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	97.79
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.78
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.76
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	97.74
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	97.72
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	97.69
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.69
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	97.68
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.66
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.65
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	97.65
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	97.63
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.59
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	97.59
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.58
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	97.58
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	97.57
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.57
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	97.57
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.55
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.54
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	97.53
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	97.53
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	97.52
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	97.5
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.49
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	97.48
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	97.48
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	97.48
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	97.47
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.47
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	97.46
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	97.45
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	97.43
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	97.42
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	97.41
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	97.41
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	97.39
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	97.38
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	97.31
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.3
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	97.27
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	97.24
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	97.23
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	97.22
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	97.21
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.19
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	97.17
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	97.16
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	97.15
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	97.13
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	97.13
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	97.12
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.09
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	97.08
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	97.08
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	97.08
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	97.07
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	97.07
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	97.06
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.01
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	96.98
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	96.92
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	96.9
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.84
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	96.84
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.78
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	96.71
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.68
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	96.68
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	96.68
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	96.6
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.59
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	96.59
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	96.57
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	96.43
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	96.43
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.4
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	96.29
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	96.29
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	96.29
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.25
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	96.21
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	96.21
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	96.21
d1l7da2	194	Nicotinamide nucleotide transhydrogenase dI compon	96.17
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.12
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	96.11
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	96.09
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	96.07
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	96.05
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.04
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.9
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.89
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.89
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	95.88
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.87
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	95.87
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	95.82
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.8
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	95.79
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	95.77
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	95.76
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	95.74
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	95.74
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	95.66
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	95.61
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	95.6
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.59
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	95.55
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.53
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	95.52
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	95.51
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.51
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.49
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.46
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	95.44
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	95.44
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	95.43
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.42
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.39
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	95.37
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	95.35
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	95.35
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	95.35
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	95.35
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	95.31
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	95.29
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	95.27
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	95.25
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	95.22
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	95.22
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.21
d1js1x2	161	Transcarbamylase-like protein {Bacteroides fragili	95.18
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	95.13
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	95.11
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	95.1
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	95.08
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	95.07
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	95.07
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	95.03
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	95.03
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	95.03
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	95.03
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	95.02
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.0
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	94.99
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	94.95
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	94.9
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	94.89
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.88
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	94.87
d1pjca2	193	L-alanine dehydrogenase {Phormidium lapideum [TaxI	94.86
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	94.84
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	94.84
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.8
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	94.78
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	94.77
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	94.76
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	94.69
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	94.65
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	94.58
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	94.57
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	94.56
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	94.56
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	94.53
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	94.51
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	94.51
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	94.5
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	94.49
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	94.33
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.23
d1qp8a2	121	Putative formate dehydrogenase {Archaeon Pyrobacul	94.23
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	94.21
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	94.18
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	94.17
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	94.08
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	93.97
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	93.95
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	93.95
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	93.83
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	93.77
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	93.43
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	93.41
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	93.41
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	93.41
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	93.4
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	93.37
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	93.35
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	93.32
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	93.18
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	93.09
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	92.99
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	92.97
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	92.97
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	92.86
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	92.8
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	92.7
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	92.62
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	92.46
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.35
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	92.26
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	92.26
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	92.21
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	92.18
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	92.09
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	91.74
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	91.74
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.7
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	91.55
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	91.48
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.39
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	91.37
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	91.37
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	91.29
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	91.2
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	90.89
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	90.66
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	90.59
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	90.46
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	90.38
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	90.31
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	90.2
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	90.15
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	90.07
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	90.05
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	90.03
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	89.9
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	89.84
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	89.81
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	89.76
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	89.66
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	89.37
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	88.99
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	88.96
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.95
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	88.84
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	88.83
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	88.78
d2vjma1	427	Formyl-CoA transferase {Oxalobacter formigenes [Ta	88.77
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	88.69
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	88.57
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	88.54
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.38
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	88.35
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	88.2
d2blna2	203	Polymyxin resistance protein ArnA, N-terminal doma	88.16
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	88.08
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	88.06
d1xk7a1	402	Crotonobetainyl-CoA:carnitine CoA-transferase, Cai	87.94
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	87.8
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	87.4
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	87.38
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	86.95
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	86.77
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	86.65
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	86.52
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	86.46
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	86.42
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	86.36
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	86.27
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	86.23
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	86.16
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	86.06
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	86.0
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	85.97
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	85.91
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.81
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	85.57
d2bw0a2	203	10-formyltetrahydrofolate dehydrogenase domain 1 {	85.47
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	85.26
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.04
d1x74a1	359	2-methylacyl-CoA racemase Mcr {Mycobacterium tuber	84.98
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	84.91
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	84.9
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	84.84
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	84.79
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	84.61
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	84.56
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	84.4
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	83.94
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	83.52
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	83.45
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	83.44
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	83.35
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	83.08
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	82.84
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	82.84
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	82.71
d1q7ea_	417	Hypothetical protein YfdW {Escherichia coli [TaxId	82.71
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	82.69
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	82.52
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	82.23
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	82.18
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	81.03
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	80.7
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	80.42
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	80.17

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=100.00  E-value=4.1e-50  Score=330.33  Aligned_cols=180  Identities=28%  Similarity=0.462  Sum_probs=163.4

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccC-cccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcC
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVA-GVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG   79 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~-~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g   79 (240)
                      +|||+++|++.++++.+++|.|... .....++++.|+++||||+|+||+.+|+++++||++|.+||+...........+
T Consensus        11 ~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~   90 (191)
T d1gdha1          11 LLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQ   90 (191)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHT
T ss_pred             HHHHHHHhCHHHHHHHHHcCCCCcCCccccccceecccceEEeecccchHHHHHHHHhhccccccccccccccchhhccc
Confidence            4899999999999999999999642 223457899999999999999999999999999999999998765555544455


Q ss_pred             ceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCC
Q 026360           80 AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQP  159 (240)
Q Consensus        80 ~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP  159 (240)
                      .....++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||++||++||+++|++|++.||++|||++||
T Consensus        91 ~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i~~a~lDV~~~EP  170 (191)
T d1gdha1          91 ATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP  170 (191)
T ss_dssp             CEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT
T ss_pred             ccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcCCceEEEEECCCCCC
Confidence            55567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCeEEcCCCCCC
Q 026360          160 APKDHPWRYMPNQAMTPHVSGT  181 (240)
Q Consensus       160 ~~~~~~l~~~~nv~~TPH~a~~  181 (240)
                       +.++|||.+||+++|||+|++
T Consensus       171 -~~~~~l~~~~nvi~TPHiasa  191 (191)
T d1gdha1         171 -NINEGYYDLPNTFLFPHIGSA  191 (191)
T ss_dssp             -SCCTTGGGCTTEEECSSCTTC
T ss_pred             -CCCchHHcCCCEEECCccccC
Confidence             567899999999999999874

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=100.00  E-value=3.2e-50  Score=330.34  Aligned_cols=180  Identities=49%  Similarity=0.888  Sum_probs=167.9

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      +|||++.|+++.+++.+++|.|........+++|.|+++||+|+|+||+.+|+++++||++|.+||+...+.......++
T Consensus         9 ~~iL~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~   88 (188)
T d2naca1           9 MMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNL   88 (188)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTC
T ss_pred             HHHHHHHhCHHHHHHHHHhCCCCCcccCCcceeccccceeeccccccchhhhhhhhccCceEEEEeeccccccccccccc
Confidence            47999999999999999999997543333467899999999999999999999999999999999997766666666777


Q ss_pred             eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (240)
Q Consensus        81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  160 (240)
                      ....++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||++||++||+++|++|++.||+||||++||.
T Consensus        89 ~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~ga~lDV~~~EP~  168 (188)
T d2naca1          89 TWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPA  168 (188)
T ss_dssp             EECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSC
T ss_pred             cccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCceeEEEeCCCCCCC
Confidence            77789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCeEEcCCCCC
Q 026360          161 PKDHPWRYMPNQAMTPHVSG  180 (240)
Q Consensus       161 ~~~~~l~~~~nv~~TPH~a~  180 (240)
                      +.++||+.+||+++|||+||
T Consensus       169 ~~~~~l~~~~nv~~TPHiaG  188 (188)
T d2naca1         169 PKDHPWRTMPYNGMTPHISG  188 (188)
T ss_dssp             CTTCGGGTSTTBCCCCSCTT
T ss_pred             CCCChHHcCCCeEEccccCc
Confidence            99999999999999999997

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=6.2e-50  Score=327.57  Aligned_cols=174  Identities=33%  Similarity=0.566  Sum_probs=160.4

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      +|||++.|+++.+++.+++|.|.+...  .+.++.|+++||+|+|.||+.+|+++++|||+|++||+.. ..+.....++
T Consensus        11 ~liL~~~R~i~~~~~~~~~~~W~~~~~--~~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~-~~~~~~~~~~   87 (184)
T d1ygya1          11 ALLLAASRQIPAADASLREHTWKRSSF--SGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYV-SPARAAQLGI   87 (184)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCGGGC--CBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS-CHHHHHHHTC
T ss_pred             HHHHHHHcCHHHHHHHHHhCCCCcccc--ccccccceeeeeccccchhHHHHHHhhhccceEEeecCCC-ChhHHhhcCc
Confidence            589999999999999999999976432  4678999999999999999999999999999999999865 3444455566


Q ss_pred             eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (240)
Q Consensus        81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  160 (240)
                      +.. +++|++++||+|++|+|+|++|+++|+++.|+.||++++|||+|||++||++||+++|++|++.||+||||++||+
T Consensus        88 ~~~-~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i~~a~lDV~~~EP~  166 (184)
T d1ygya1          88 ELL-SLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPC  166 (184)
T ss_dssp             EEC-CHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSC
T ss_pred             eec-cHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcEeEEEEeCCCCCCC
Confidence            654 8999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCCCCeEEcCCCC
Q 026360          161 PKDHPWRYMPNQAMTPHVS  179 (240)
Q Consensus       161 ~~~~~l~~~~nv~~TPH~a  179 (240)
                      + ++|||.+||+++|||+|
T Consensus       167 ~-~~~l~~~~nviiTPHIG  184 (184)
T d1ygya1         167 T-DSPLFELAQVVVTPHLG  184 (184)
T ss_dssp             S-CCGGGGCTTEEECSSCS
T ss_pred             C-CchHhcCCCEEECCCCC
Confidence            6 79999999999999996

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=100.00  E-value=1.8e-49  Score=326.90  Aligned_cols=179  Identities=29%  Similarity=0.438  Sum_probs=163.1

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCc-----ccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHH
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAG-----VAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE   75 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~-----~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~   75 (240)
                      +|||++.|++...++.+++|.|.+..     ....+.+|.|+++||||+|+||+.+|+.+++|||+|++||+... .+..
T Consensus         9 ~liL~l~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~-~~~~   87 (193)
T d1mx3a1           9 CHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLS-DGVE   87 (193)
T ss_dssp             HHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSC-TTHH
T ss_pred             HHHHHHHhCHHHHHHHHHcCCcccccccccccccCceeeeCceEEEeccccccccceeeeeccccceeeccCccc-ccch
Confidence            47999999999999999999997532     11346789999999999999999999999999999999998753 3344


Q ss_pred             HhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCC
Q 026360           76 KETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (240)
Q Consensus        76 ~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~  155 (240)
                      ...++....++++++++||+|++|+|++++|+++++++.|+.||++++|||+|||++||++||+++|++|++.||++|||
T Consensus        88 ~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~  167 (193)
T d1mx3a1          88 RALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVH  167 (193)
T ss_dssp             HHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCC
T ss_pred             hhhccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHcCCceEEEEEcC
Confidence            45577777899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC-CCCCCCCCCCeEEcCCCCC
Q 026360          156 NPQPAP-KDHPWRYMPNQAMTPHVSG  180 (240)
Q Consensus       156 ~~EP~~-~~~~l~~~~nv~~TPH~a~  180 (240)
                      ++||.+ .++||+.+|||++|||+|+
T Consensus       168 ~~EP~~~~~~~l~~~~nvi~TPHiA~  193 (193)
T d1mx3a1         168 ESEPFSFSQGPLKDAPNLICTPHAAW  193 (193)
T ss_dssp             SSSSCCTTSSTTTTCSSEEECSSCTT
T ss_pred             CCCCCCCCchhHHcCCCEEEcCCcCc
Confidence            999987 5789999999999999985

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=100.00  E-value=1.7e-48  Score=322.70  Aligned_cols=176  Identities=25%  Similarity=0.441  Sum_probs=156.7

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      ++||++.|++..+++.+++|.|.+... ..+++|.|++|||||+|+||+.+|+++++|||+|++||+......   ....
T Consensus        11 ~~iL~l~R~~~~~~~~~~~g~w~~~~~-~~~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~---~~~~   86 (199)
T d1dxya1          11 TDTLYLLRNMGKVQAQLQAGDYEKAGT-FIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGD---HPDF   86 (199)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCHHHHTC-CCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSC---CTTC
T ss_pred             HHHHHHHhCHHHHHHHHHhCCCCcccC-cccccccceeeeeeecccccccccccccccceeeeccCCccchhh---hcch
Confidence            479999999999999999999975432 357899999999999999999999999999999999998653321   1123


Q ss_pred             eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (240)
Q Consensus        81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  160 (240)
                      .. .++++++++||+|++|+|++++|+++++++.|+.||++++|||+|||++||++||+++|++|++.||+||||++||.
T Consensus        87 ~~-~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i~ga~lDV~~~EP~  165 (199)
T d1dxya1          87 DY-VSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETE  165 (199)
T ss_dssp             EE-CCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHHH
T ss_pred             hH-HHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCcceEeccccCCCCc
Confidence            33 48999999999999999999999999999999999999999999999999999999999999999999999999996


Q ss_pred             C-------------CCCCCCCCCCeEEcCCCCCC
Q 026360          161 P-------------KDHPWRYMPNQAMTPHVSGT  181 (240)
Q Consensus       161 ~-------------~~~~l~~~~nv~~TPH~a~~  181 (240)
                      +             ..+||+.+|||++|||+||+
T Consensus       166 ~~~~~~~~~~~~~p~~~~L~~~~nviiTPHiagy  199 (199)
T d1dxya1         166 DLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYY  199 (199)
T ss_dssp             HHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTC
T ss_pred             chhhccccccccChhhHHHhcCCCEEECCccccC
Confidence            2             22567889999999999996

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=100.00  E-value=1.1e-47  Score=316.93  Aligned_cols=175  Identities=26%  Similarity=0.422  Sum_probs=155.8

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      ++||+++|++...++.+++|+|.+...  .+++|.|++|||||+|+||+.+|+++++|||+|++||+... .. ....++
T Consensus        10 ~~~l~l~r~~~~~~~~~~~~~~~w~~~--~g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~-~~-~~~~~~   85 (197)
T d1j4aa1          10 IQAARILRQDKAMDEKVARHDLRWAPT--IGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRN-PE-LEKKGY   85 (197)
T ss_dssp             HHHHHHHHTHHHHHHHHHTTBCCCTTC--CBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC-HH-HHHTTC
T ss_pred             HHHHHHHhCcHHHHHHHHhCCCCcCCC--cCccccCCeEEEecccccchhHHHhHhhhcccccccCcccc-cc-ccccee
Confidence            478999999999999999998876542  47899999999999999999999999999999999998653 22 222344


Q ss_pred             eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (240)
Q Consensus        81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  160 (240)
                      . ..++++++++||+|++|+|+|++|+++++++.|+.||+|+++||+|||++||++||+++|++|++.||++|||++||.
T Consensus        86 ~-~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~~~Ep~  164 (197)
T d1j4aa1          86 Y-VDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVG  164 (197)
T ss_dssp             B-CSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTCTT
T ss_pred             e-eccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcccchheeeeccccCCc
Confidence            3 469999999999999999999999999999999999999999999999999999999999999999999999999964


Q ss_pred             C-------------CCCCCCCCCCeEEcCCCCC
Q 026360          161 P-------------KDHPWRYMPNQAMTPHVSG  180 (240)
Q Consensus       161 ~-------------~~~~l~~~~nv~~TPH~a~  180 (240)
                      .             .++|||.+|||++|||+|+
T Consensus       165 ~~~~~~~~~~~p~~~~~~L~~~~nviiTPHiA~  197 (197)
T d1j4aa1         165 IFNEDWEGKEFPDARLADLIARPNVLVTPKTAF  197 (197)
T ss_dssp             TTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTT
T ss_pred             ccccccccccCCccchhhhhcCCCEEeCcccCc
Confidence            3             3456889999999999985

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=100.00  E-value=5.8e-47  Score=308.96  Aligned_cols=171  Identities=22%  Similarity=0.350  Sum_probs=155.3

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      +|||+++|++..+++.+++|+|....   ...+|.|++|||||+|.||+.+|+.+++||++|++||+++...      ..
T Consensus        10 ~liL~~~R~i~~~~~~~~~~~w~~~~---~~~~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~------~~   80 (181)
T d1qp8a1          10 ALLLAPYKRIIQYGEKMKRGDYGRDV---EIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEG------PW   80 (181)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCCCS---CCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCS------SS
T ss_pred             HHHHHHHhCHHHHHHHHHcCCCCCCC---CCCcccCceEEEeccccccccceeeeecccccccccccccccc------ce
Confidence            48999999999999999999997542   2346999999999999999999999999999999999875322      12


Q ss_pred             eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCC-C
Q 026360           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQ-P  159 (240)
Q Consensus        81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~E-P  159 (240)
                      ....++++++++||+|++|+|++++|+++++++.|+.||++++|||+|||++||+++|+++|++|++.+|++|||++| |
T Consensus        81 ~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~~aalDV~~~e~p  160 (181)
T d1qp8a1          81 RFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRND  160 (181)
T ss_dssp             CCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTC
T ss_pred             eeeechhhhhhccchhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhcccCcEEEEEEecCCCCCC
Confidence            334689999999999999999999999999999999999999999999999999999999999999999999999765 5


Q ss_pred             CCCCCCCCCCCCeEEcCCCCC
Q 026360          160 APKDHPWRYMPNQAMTPHVSG  180 (240)
Q Consensus       160 ~~~~~~l~~~~nv~~TPH~a~  180 (240)
                      .+.++||+.+|||++|||+||
T Consensus       161 ~~~~~~l~~~~nvi~TPHiaG  181 (181)
T d1qp8a1         161 FAKDAEFFSLPNVVATPWVAG  181 (181)
T ss_dssp             CGGGHHHHTSTTEEECCSCSS
T ss_pred             CCCCChHHcCCCEEeccccCc
Confidence            678899999999999999997

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.9e-47  Score=310.78  Aligned_cols=174  Identities=29%  Similarity=0.470  Sum_probs=149.6

Q ss_pred             CcHHHHHhCChHHHHHHHcCCCccCcccccccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc
Q 026360            1 MRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA   80 (240)
Q Consensus         1 ~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~   80 (240)
                      ++||++.|+++.+++.+++|.|.+...  .++++.|++|||+|+|.||+.+|+++++||++|++||+......    ...
T Consensus        11 ~~il~l~R~~~~~~~~~~~~~w~~~~~--~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~----~~~   84 (188)
T d1sc6a1          11 GELLLLLRGVPEANAKAHRGVGNKLAA--GSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL----GNA   84 (188)
T ss_dssp             HHHHHHHHTHHHHHHHHHHTCCC-------CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCC----TTC
T ss_pred             HHHHHHHhChHHHHHHHHhCCCccccc--ccccccceEEEEeecccchhhhhhhcccccceEeeccccccchh----hhh
Confidence            478999999999999999999976432  46789999999999999999999999999999999998653221    123


Q ss_pred             eecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCC
Q 026360           81 KFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPA  160 (240)
Q Consensus        81 ~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~  160 (240)
                      ....++++++++||+|++|+|++++|+++|+++.|+.||++++|||+|||++||++||+++|+++++.+|++|||++||.
T Consensus        85 ~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~~a~lDV~~~EP~  164 (188)
T d1sc6a1          85 TQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPA  164 (188)
T ss_dssp             EECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC------
T ss_pred             hhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCceEEEEecCCCCCC
Confidence            34568999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ----CCCCCCCCCCCeEEcCCCCC
Q 026360          161 ----PKDHPWRYMPNQAMTPHVSG  180 (240)
Q Consensus       161 ----~~~~~l~~~~nv~~TPH~a~  180 (240)
                          |..+||+++|||++|||+||
T Consensus       165 ~~~~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d1sc6a1         165 TNSDPFTSPLAEFDNVLLTPHIGG  188 (188)
T ss_dssp             ---CTTTGGGTTCTTEEEECCCSC
T ss_pred             CcCCccchhHhcCCCEEEcCCcCc
Confidence                44568999999999999997

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.9e-17  Score=127.54  Aligned_cols=109  Identities=17%  Similarity=0.229  Sum_probs=93.6

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcc
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i  110 (240)
                      ...|.||+++|+|||.+|+.+|+.++++|++|+++++.|...-.+...|+... ++++++..+|++++++.    ++++|
T Consensus        19 ~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~-~~~~a~~~adivvtaTG----n~~vI   93 (163)
T d1li4a1          19 DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVT-TMDEACQEGNIFVTTTG----CIDII   93 (163)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CHHHHTTTCSEEEECSS----CSCSB
T ss_pred             CceecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEee-ehhhhhhhccEEEecCC----Cccch
Confidence            35689999999999999999999999999999999998755445555677655 89999999999988876    67899


Q ss_pred             cHHHHccCCCCCEEEEcC-CCcccCHHHHHHHHHh
Q 026360          111 DKDRIAKMKKGVLIVNNA-RGAIMDTQAVVDACSS  144 (240)
Q Consensus       111 ~~~~l~~mk~gailIN~s-rg~~vd~~aL~~aL~~  144 (240)
                      +.+.|+.||+|+++.|++ +..-+|.++|.+...+
T Consensus        94 ~~eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~~~~  128 (163)
T d1li4a1          94 LGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVE  128 (163)
T ss_dssp             CHHHHTTCCTTEEEEECSSSTTSBCHHHHHHHCSE
T ss_pred             hHHHHHhccCCeEEEEeccccceecHHHHhhccce
Confidence            999999999999999997 5677899998775433

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.68  E-value=4.3e-17  Score=128.44  Aligned_cols=115  Identities=19%  Similarity=0.272  Sum_probs=102.5

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc--HHH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR  114 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~--~~~  114 (240)
                      ++|||||+|.||..+|++|...|++|++||+++...+.+.+.+.....+.+++++++|+|++|+|..++.+.++.  ...
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~   80 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   80 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch
Confidence            589999999999999999999999999999987666667777888888999999999999999998888887763  357


Q ss_pred             HccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEee
Q 026360          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  153 (240)
Q Consensus       115 l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lD  153 (240)
                      +..+++|.++||+++...-+...+.+.+++.++.  .+|
T Consensus        81 ~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vd  117 (161)
T d1vpda2          81 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVE--MLD  117 (161)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCE--EEE
T ss_pred             hhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--eec
Confidence            8889999999999999999999999999998887  455

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.62  E-value=9.8e-16  Score=120.60  Aligned_cols=142  Identities=16%  Similarity=0.118  Sum_probs=98.2

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCce-ecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK-FEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  115 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~-~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l  115 (240)
                      ++|||||+|.||.++|+.|++.|++|++||+++...+.+.+.|.. ...+..+.+++||+|++++|. ..+..++ .+..
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~-~~~~~vl-~~l~   78 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPI-QLILPTL-EKLI   78 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCH-HHHHHHH-HHHG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcH-hhhhhhh-hhhh
Confidence            589999999999999999999999999999986555666666642 223445678999999999994 3455555 4677


Q ss_pred             ccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCC-CCCCCCCCCCCCCCeEEcCCCCCC
Q 026360          116 AKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP-QPAPKDHPWRYMPNQAMTPHVSGT  181 (240)
Q Consensus       116 ~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~-EP~~~~~~l~~~~nv~~TPH~a~~  181 (240)
                      ..+++++++++++.......... +.+...-+....+..... .|......|+....+++||+-++.
T Consensus        79 ~~l~~~~iv~~~~s~~~~~~~~~-~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~  144 (165)
T d2f1ka2          79 PHLSPTAIVTDVASVKTAIAEPA-SQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTD  144 (165)
T ss_dssp             GGSCTTCEEEECCSCCHHHHHHH-HHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCC
T ss_pred             hhcccccceeeccccchHHHHHH-HHhhcccccceeeecccccchhhhcccccCCCeEEEEeCCCCC
Confidence            88999999999987654433433 333333333222221111 132334556777779999987654

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.60  E-value=1.3e-15  Score=119.89  Aligned_cols=116  Identities=18%  Similarity=0.236  Sum_probs=101.5

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc--HHH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD--KDR  114 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~--~~~  114 (240)
                      ++|||||+|.||..+|++|...|++|.+||+++...+.+...+.....++.+++.++|+|++++|..+..+.++.  ...
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~   81 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL   81 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhccccc
Confidence            589999999999999999999999999999987666667777877778999999999999999998877776652  346


Q ss_pred             HccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeC
Q 026360          115 IAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV  154 (240)
Q Consensus       115 l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV  154 (240)
                      +..+++|.++||++...+-+...+.+.+++..+.  .+|+
T Consensus        82 ~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~--~~da  119 (162)
T d3cuma2          82 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLA--MLDA  119 (162)
T ss_dssp             HHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred             cccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCc--EEec
Confidence            7789999999999999999999999999998887  4554

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.55  E-value=5.5e-14  Score=110.74  Aligned_cols=147  Identities=11%  Similarity=0.012  Sum_probs=107.3

Q ss_pred             CeEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCChhHHHhcCc--eecCCHHh-hcCcCCEEEEcCCCChhhhhccc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGA--KFEEDLDT-MLPKCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~g~--~~~~~l~e-ll~~aDiVvl~lp~~~~t~~~i~  111 (240)
                      |+|+|||+|.||.++|+.|+..|+  +|++||+++...+.+.+.+.  ....+.++ ....+|+|++|+|. ..+..++ 
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~-~~~~~vl-   79 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPV-RTFREIA-   79 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCH-HHHHHHH-
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCc-hhhhhhh-
Confidence            579999999999999999998885  79999998766666777665  23344444 33579999999993 2344444 


Q ss_pred             HHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCC-CCCCCCCCCCCCCCeEEcCCCCCCcHHHH
Q 026360          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNP-QPAPKDHPWRYMPNQAMTPHVSGTTIDAQ  186 (240)
Q Consensus       112 ~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~-EP~~~~~~l~~~~nv~~TPH~a~~t~~~~  186 (240)
                      .+....+++++++++++.....-.+++.+.+...-+.+.-+...+. .|......|+.-..+++|||-.. +.+..
T Consensus        80 ~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~-~~~~~  154 (171)
T d2g5ca2          80 KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKT-DKKRL  154 (171)
T ss_dssp             HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSS-CHHHH
T ss_pred             hhhhccccccccccccccccHHHHHHHHHhhcccccccccccccccccHHHHHHHhhCCCeEEEecCCCC-CHHHH
Confidence            4567779999999999997777777787888776566555554332 34445667888888999998753 44443

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=99.55  E-value=1.1e-14  Score=114.01  Aligned_cols=102  Identities=18%  Similarity=0.214  Sum_probs=88.3

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccH
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~  112 (240)
                      .|.||++.|+|||.+|+.+|++++++|++|++++.+|...-++...|++.. +++++++.+|+++.++.    .+++|+.
T Consensus        20 ~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v~-~~~~a~~~aDi~vTaTG----n~~vI~~   94 (163)
T d1v8ba1          20 LISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVV-TLDEIVDKGDFFITCTG----NVDVIKL   94 (163)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEEC-CHHHHTTTCSEEEECCS----SSSSBCH
T ss_pred             eecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCccC-chhHccccCcEEEEcCC----CCccccH
Confidence            589999999999999999999999999999999998765556666787765 99999999999999997    4578999


Q ss_pred             HHHccCCCCCEEEEcCCCcc-cCHHHHH
Q 026360          113 DRIAKMKKGVLIVNNARGAI-MDTQAVV  139 (240)
Q Consensus       113 ~~l~~mk~gailIN~srg~~-vd~~aL~  139 (240)
                      +.|..||+|+++.|++.-.. +|-++|.
T Consensus        95 ~h~~~MKdgaIl~N~GHfd~EIdv~~L~  122 (163)
T d1v8ba1          95 EHLLKMKNNAVVGNIGHFDDEIQVNELF  122 (163)
T ss_dssp             HHHTTCCTTCEEEECSSTTTSBCHHHHH
T ss_pred             HHHHHhhCCeEEEeccccchhhhhHHHH
Confidence            99999999999999998654 4555554

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.49  E-value=3.4e-14  Score=113.08  Aligned_cols=115  Identities=11%  Similarity=0.107  Sum_probs=95.7

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcC--------ceecCCHHhhcCcCCEEEEcCCCChhhh
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG--------AKFEEDLDTMLPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g--------~~~~~~l~ell~~aDiVvl~lp~~~~t~  107 (240)
                      .++|||||+|.||..+|++|...|++|++||+++.+.+.+.+.+        .....++.+.+..+|.+++++|..+.+.
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~   81 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVD   81 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHH
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHH
Confidence            46899999999999999999999999999999876555544432        2223455678889999999999888877


Q ss_pred             hcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEee
Q 026360          108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  153 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lD  153 (240)
                      .+. ...+..+++|.++||++...+-+...+.+.+.+..+.  .+|
T Consensus        82 ~v~-~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~--~ld  124 (176)
T d2pgda2          82 NFI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGIL--FVG  124 (176)
T ss_dssp             HHH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEE
T ss_pred             HHH-HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCc--eec
Confidence            764 4788899999999999999999999999999998887  445

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.31  E-value=1.3e-12  Score=101.27  Aligned_cols=106  Identities=12%  Similarity=0.129  Sum_probs=80.8

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA  116 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~  116 (240)
                      +||||||+|.||+.+|+.|...|++|+++++.+.........+.....+.+|+++++|+|++++|...... .+ .+...
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~~~-~~-~~~~~   78 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALG-AA-RRAGR   78 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHHH-HH-HHHHT
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchHHH-HH-Hhhcc
Confidence            58999999999999999999999999999987655444443344345678999999999999999654332 22 12222


Q ss_pred             cCCCCCEEEEcCCCcccCHHHHHHHHHhCC
Q 026360          117 KMKKGVLIVNNARGAIMDTQAVVDACSSGH  146 (240)
Q Consensus       117 ~mk~gailIN~srg~~vd~~aL~~aL~~g~  146 (240)
                        ..+.++|+++.........+.+.+++.+
T Consensus        79 --~~~~~~id~st~~p~~~~~l~~~~~~~~  106 (152)
T d1i36a2          79 --HVRGIYVDINNISPETVRMASSLIEKGG  106 (152)
T ss_dssp             --TCCSEEEECSCCCHHHHHHHHHHCSSSE
T ss_pred             --cCCceeeccCcCCHHHHHHHHHHHhccC
Confidence              2367899999998888888888887654

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.30  E-value=2.1e-12  Score=100.47  Aligned_cols=111  Identities=14%  Similarity=0.159  Sum_probs=86.6

Q ss_pred             eEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChh-HHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHc
Q 026360           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-LEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIA  116 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~  116 (240)
                      ||||||+|.||..+|++|...|+.+ +|+++..+.. .....+.. . +..+.+.++|++++++|..++..... ...+.
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~i~~~~~~~~v~~~~-~~l~~   77 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSE-A-VPLERVAEARVIFTCLPTTREVYEVA-EALYP   77 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCE-E-CCGGGGGGCSEEEECCSSHHHHHHHH-HHHTT
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCc-c-cccccccceeEEEecccchhhhhhhh-ccccc
Confidence            6999999999999999999888866 5665543332 23333433 3 33466678999999999877766554 57888


Q ss_pred             cCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeC
Q 026360          117 KMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDV  154 (240)
Q Consensus       117 ~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV  154 (240)
                      .++++.++||+++...-....+.+.+++.++.  .+|.
T Consensus        78 ~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~--~lda  113 (156)
T d2cvza2          78 YLREGTYWVDATSGEPEASRRLAERLREKGVT--YLDA  113 (156)
T ss_dssp             TCCTTEEEEECSCCCHHHHHHHHHHHHTTTEE--EEEC
T ss_pred             cccccccccccccCCHHHHHHHHHHHHHcCCe--EEec
Confidence            99999999999999999999999999998887  4553

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.29  E-value=6.7e-12  Score=97.37  Aligned_cols=100  Identities=12%  Similarity=0.241  Sum_probs=81.7

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhH-HHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRI  115 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~-~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l  115 (240)
                      ++|||||+|+||+++++.|...|.+|++++++..+.+. .++.|+....+.++++++||+|+++++  |+.    -.+.+
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavk--p~~----~~~vl   74 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK--PQL----FETVL   74 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC--GGG----HHHHH
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecc--hHh----HHHHh
Confidence            58999999999999999999999999999987544333 345688888899999999999999997  321    24567


Q ss_pred             ccCCCCCEEEEcCCCcccCHHHHHHHHHh
Q 026360          116 AKMKKGVLIVNNARGAIMDTQAVVDACSS  144 (240)
Q Consensus       116 ~~mk~gailIN~srg~~vd~~aL~~aL~~  144 (240)
                      +.++++.++|++..|  +..+.|.+.+..
T Consensus        75 ~~l~~~~~iis~~ag--i~~~~l~~~l~~  101 (152)
T d2ahra2          75 KPLHFKQPIISMAAG--ISLQRLATFVGQ  101 (152)
T ss_dssp             TTSCCCSCEEECCTT--CCHHHHHHHHCT
T ss_pred             hhcccceeEeccccc--ccHHHHHhhhcc
Confidence            789999999999877  567778777754

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.21  E-value=1.4e-11  Score=97.44  Aligned_cols=119  Identities=15%  Similarity=0.139  Sum_probs=92.8

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc--------eecCCH---HhhcCcCCEEEEcCCCChh
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA--------KFEEDL---DTMLPKCDIVVVNTPLTEK  105 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~--------~~~~~l---~ell~~aDiVvl~lp~~~~  105 (240)
                      ++|||||+|.||..+|++|...|++|++||+++.+.+.+.+.+.        ....+.   -..+..++.++.+++....
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence            68999999999999999999999999999997655444433332        112233   3456788899999987776


Q ss_pred             hhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCC
Q 026360          106 TRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~  156 (240)
                      ....++ .....++++.++||+++...-+...+.+.|.+..+......|+.
T Consensus        82 ~~~~~~-~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g  131 (178)
T d1pgja2          82 TDSTIE-QLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISG  131 (178)
T ss_dssp             HHHHHH-HHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEES
T ss_pred             hhhhhh-hhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccC
Confidence            666654 56777999999999999999999999999999888855444444

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=99.10  E-value=2e-10  Score=90.21  Aligned_cols=108  Identities=17%  Similarity=0.198  Sum_probs=79.0

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc---------------eecCCHHhhcCcCCEEEEcC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA---------------KFEEDLDTMLPKCDIVVVNT  100 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~---------------~~~~~l~ell~~aDiVvl~l  100 (240)
                      .||++|||.|.||..+|..|...|++|.+|++++...+.....+.               ....+++|.++++|+|++++
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v   80 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV   80 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence            489999999999999999999999999999997544333333221               12357899999999999999


Q ss_pred             CCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCC
Q 026360          101 PLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGH  146 (240)
Q Consensus       101 p~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~  146 (240)
                      |.. ....++ ++....++++.+++- ..|....+..+.+.+....
T Consensus        81 ~~~-~~~~~~-~~i~~~l~~~~~iv~-~~g~~~~~~~~~~~~~~~~  123 (184)
T d1bg6a2          81 PAI-HHASIA-ANIASYISEGQLIIL-NPGATGGALEFRKILRENG  123 (184)
T ss_dssp             CGG-GHHHHH-HHHGGGCCTTCEEEE-SSCCSSHHHHHHHHHHHTT
T ss_pred             chh-HHHHHH-HHhhhccCCCCEEEE-eCCCCccHHHHHHHHHHhc
Confidence            833 334433 456678899998774 4555555666667776554

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=99.09  E-value=1.8e-10  Score=88.64  Aligned_cols=94  Identities=16%  Similarity=0.238  Sum_probs=72.5

Q ss_pred             cCCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccH
Q 026360           34 LEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (240)
Q Consensus        34 l~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~  112 (240)
                      ..-++|+||| +|.||+++|+.|++.|++|.+||++..             ...++.++.+|++++++|.. .+.. +..
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~-------------~~~~~~~~~~~~v~~~~~~~-~~~~-v~~   71 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW-------------AVAESILANADVVIVSVPIN-LTLE-TIE   71 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG-------------GGHHHHHTTCSEEEECSCGG-GHHH-HHH
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc-------------cccchhhhhccccccccchh-hhee-eee
Confidence            4567999999 999999999999999999999998642             13456678999999999943 2333 345


Q ss_pred             HHHccCCCCCEEEEcCCCcccCHHHHHHHH
Q 026360          113 DRIAKMKKGVLIVNNARGAIMDTQAVVDAC  142 (240)
Q Consensus       113 ~~l~~mk~gailIN~srg~~vd~~aL~~aL  142 (240)
                      +....++++++++|++.-+.--.+++.+.+
T Consensus        72 ~~~~~~~~~~iiiD~~Svk~~~~~~~~~~~  101 (152)
T d2pv7a2          72 RLKPYLTENMLLADLTSVKREPLAKMLEVH  101 (152)
T ss_dssp             HHGGGCCTTSEEEECCSCCHHHHHHHHHHC
T ss_pred             cccccccCCceEEEecccCHHHHHHHHHHc
Confidence            788889999999999976544444444443

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=99.03  E-value=4.6e-11  Score=92.00  Aligned_cols=89  Identities=16%  Similarity=0.048  Sum_probs=61.1

Q ss_pred             EEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccC
Q 026360           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKM  118 (240)
Q Consensus        39 vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~m  118 (240)
                      |||||+|+||+.+++.|+..+..+.+|+|++.+.+...+.+.....+++++++++|+|++|+|.. ..     .+.+..+
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d~-~i-----~~v~~~l   75 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDR-YI-----KTVANHL   75 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTT-TH-----HHHHTTT
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccch-hh-----hHHHhhh
Confidence            79999999999999999875444568999865555555444444568889999999999999953 22     2344555


Q ss_pred             -CCCCEEEEcCCCccc
Q 026360          119 -KKGVLIVNNARGAIM  133 (240)
Q Consensus       119 -k~gailIN~srg~~v  133 (240)
                       +++.++|+++.+...
T Consensus        76 ~~~~~ivi~~s~~~~~   91 (153)
T d2i76a2          76 NLGDAVLVHCSGFLSS   91 (153)
T ss_dssp             CCSSCCEEECCSSSCG
T ss_pred             cccceeeeecccchhh
Confidence             478999999976543

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.93  E-value=9.4e-10  Score=86.10  Aligned_cols=96  Identities=13%  Similarity=0.167  Sum_probs=75.5

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcC---cee----cCCHHhhcCcCCEEEEcCC-CCh
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG---AKF----EEDLDTMLPKCDIVVVNTP-LTE  104 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g---~~~----~~~l~ell~~aDiVvl~lp-~~~  104 (240)
                      .+.-.++.|||.|..|...++.++.+|.+|.++|.+....+..+...   .+.    ...+++.+++||+|+.++- ...
T Consensus        29 gv~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~  108 (168)
T d1pjca1          29 GVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGR  108 (168)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred             CCCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCc
Confidence            35678999999999999999999999999999998754444333321   211    1246788999999988763 134


Q ss_pred             hhhhcccHHHHccCCCCCEEEEcC
Q 026360          105 KTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       105 ~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      ..-.+|.++.++.||||+++||++
T Consensus       109 ~aP~lIt~~mv~~Mk~GSVIVDva  132 (168)
T d1pjca1         109 RAPILVPASLVEQMRTGSVIVDVA  132 (168)
T ss_dssp             SCCCCBCHHHHTTSCTTCEEEETT
T ss_pred             ccCeeecHHHHhhcCCCcEEEEee
Confidence            456889999999999999999997

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.93  E-value=7.7e-10  Score=86.76  Aligned_cols=95  Identities=24%  Similarity=0.338  Sum_probs=76.1

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCC-ChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhccc
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM-DPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~-~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~  111 (240)
                      -|++|+|+|||||.-|++-|..|+..|.+|++--|... +.+.+++.|++.. +++|+.+++|+|.+.+|+ +....+..
T Consensus        13 ~ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~-~~~eA~~~aDiim~L~PD-~~q~~vy~   90 (182)
T d1np3a2          13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTPD-EFQGRLYK   90 (182)
T ss_dssp             HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSCH-HHHHHHHH
T ss_pred             HHCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccccc-cHHHHhhhcCeeeeecch-HHHHHHHH
Confidence            37899999999999999999999999999887666432 3455667788766 999999999999999993 33345556


Q ss_pred             HHHHccCCCCCEEEEcCCC
Q 026360          112 KDRIAKMKKGVLIVNNARG  130 (240)
Q Consensus       112 ~~~l~~mk~gailIN~srg  130 (240)
                      ++....||+|+.+. .+.|
T Consensus        91 ~~I~p~lk~g~~L~-FaHG  108 (182)
T d1np3a2          91 EEIEPNLKKGATLA-FAHG  108 (182)
T ss_dssp             HHTGGGCCTTCEEE-ESCC
T ss_pred             HhhhhhcCCCcEEE-Eecc
Confidence            67888999999774 4444

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=98.93  E-value=7.3e-10  Score=85.38  Aligned_cols=98  Identities=15%  Similarity=0.204  Sum_probs=71.5

Q ss_pred             CeEEEEccChHHHHHHHHhccCC-CEEEEEcCCCCChhHH-HhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLE-KETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G-~~V~~~d~~~~~~~~~-~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~  114 (240)
                      ++|||||+|+||+++++.|...| .+|+++||++...+.. ++.|+...++.++ +.++|+|+++++  |+.-    .+.
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~-v~~~Div~lavk--P~~~----~~v   73 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPE-LHSDDVLILAVK--PQDM----EAA   73 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCC-CCTTSEEEECSC--HHHH----HHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccccccccccc-ccccceEEEecC--HHHH----HHh
Confidence            58999999999999999876655 8999999986544443 4467877766655 578999999997  3221    233


Q ss_pred             HccCC-CCCEEEEcCCCcccCHHHHHHHHH
Q 026360          115 IAKMK-KGVLIVNNARGAIMDTQAVVDACS  143 (240)
Q Consensus       115 l~~mk-~gailIN~srg~~vd~~aL~~aL~  143 (240)
                      ++.++ .+.++|++..|-  ..+.+.+.+.
T Consensus        74 ~~~l~~~~~~viS~~ag~--~~~~l~~~l~  101 (152)
T d1yqga2          74 CKNIRTNGALVLSVAAGL--SVGTLSRYLG  101 (152)
T ss_dssp             HTTCCCTTCEEEECCTTC--CHHHHHHHTT
T ss_pred             HHHHhhcccEEeecccCC--CHHHHHHHhC
Confidence            44443 478999988775  5566777774

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.92  E-value=4.7e-09  Score=83.14  Aligned_cols=94  Identities=21%  Similarity=0.278  Sum_probs=76.1

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecC-----------------------------
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEE-----------------------------   84 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~-----------------------------   84 (240)
                      +.--+|.|||.|..|...++.++++|.+|.++|.+....+..++++.....                             
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            456799999999999999999999999999999988777777776643321                             


Q ss_pred             CHHhhcCcCCEEEEcC--CCChhhhhcccHHHHccCCCCCEEEEcC
Q 026360           85 DLDTMLPKCDIVVVNT--PLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus        85 ~l~ell~~aDiVvl~l--p~~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      .+.+.++++|+|+.++  |. ...-.+++++.++.||||++|||++
T Consensus       107 ~l~~~l~~aDlVI~talipG-~~aP~lit~~mv~~Mk~GSVIVDva  151 (183)
T d1l7da1         107 AVLKELVKTDIAITTALIPG-KPAPVLITEEMVTKMKPGSVIIDLA  151 (183)
T ss_dssp             HHHHHHTTCSEEEECCCCTT-SCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred             HHHHHHHhhhhheeeeecCC-cccceeehHHHHHhcCCCcEEEEEe
Confidence            1234578999998765  42 2345688999999999999999997

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=98.91  E-value=2.7e-09  Score=86.15  Aligned_cols=108  Identities=21%  Similarity=0.261  Sum_probs=84.0

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcC-cCCEEEEcCCCChhhhhccc
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP-KCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~-~aDiVvl~lp~~~~t~~~i~  111 (240)
                      +|.|+||+|.|+|++|+.+|+.|...|++|+++|.++.........|.... +.++++. +||+++-|.     +.+.|+
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~-~~~~~~~~~~DI~iPcA-----~~~~I~   97 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPCA-----MGGVIT   97 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEECS-----CSCCBC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhccccc-Cccccccccceeeeccc-----cccccc
Confidence            589999999999999999999999999999999987655555566777766 6677665 699998775     357889


Q ss_pred             HHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360          112 KDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       112 ~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      .+..++++- .+++..+.+++-++ +.-+.|.++.|.
T Consensus        98 ~~~a~~i~a-k~i~e~AN~p~~~~-~~~~~L~~rgI~  132 (201)
T d1c1da1          98 TEVARTLDC-SVVAGAANNVIADE-AASDILHARGIL  132 (201)
T ss_dssp             HHHHHHCCC-SEECCSCTTCBCSH-HHHHHHHHTTCE
T ss_pred             HHHHhhhhh-heeeccCCCCcchh-hHHHHhcccceE
Confidence            999888874 45566666666555 445677777765

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.76  E-value=1.4e-08  Score=82.08  Aligned_cols=91  Identities=15%  Similarity=0.189  Sum_probs=70.2

Q ss_pred             cCC-CeEEEEccChHHHHHHHHhcc------CCCEEEE-EcCCCCChhHHHhcCcee----cCCHHhhcCcCCEEEEcCC
Q 026360           34 LEG-KTVGTVGCGRIGKLLLQRLKP------FNCNLLY-HDRVKMDPQLEKETGAKF----EEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        34 l~g-~~vgIIG~G~iG~~~A~~l~~------~G~~V~~-~d~~~~~~~~~~~~g~~~----~~~l~ell~~aDiVvl~lp  101 (240)
                      ++| |+|+|||||.-|++-|..|+.      .|.+|++ ..+...+.+.+++.|++.    +.+.+|+.++||+|++.+|
T Consensus        41 ~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlP  120 (226)
T d1qmga2          41 FKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLIS  120 (226)
T ss_dssp             TTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSC
T ss_pred             hcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecc
Confidence            678 899999999999999999998      4566654 444445667777788752    3378899999999999999


Q ss_pred             CChhhhhcccHHHHccCCCCCEEEE
Q 026360          102 LTEKTRGMFDKDRIAKMKKGVLIVN  126 (240)
Q Consensus       102 ~~~~t~~~i~~~~l~~mk~gailIN  126 (240)
                      +..+ ..+. ++....||+|+.+.=
T Consensus       121 De~Q-~~vy-~~I~p~Lk~G~~L~F  143 (226)
T d1qmga2         121 DSAQ-ADNY-EKVFSHMKPNSILGL  143 (226)
T ss_dssp             HHHH-HHHH-HHHHHHSCTTCEEEE
T ss_pred             hHHH-HHHH-HHHHHhcCCCceeee
Confidence            4433 3344 478899999997753

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.74  E-value=1e-08  Score=79.68  Aligned_cols=93  Identities=26%  Similarity=0.393  Sum_probs=69.0

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCCh-hHHHhcCcee--cCCHHhhcCcCCEEEEcCCCChhhhh
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-QLEKETGAKF--EEDLDTMLPKCDIVVVNTPLTEKTRG  108 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~~g~~~--~~~l~ell~~aDiVvl~lp~~~~t~~  108 (240)
                      .+.++++.|||.|.||+.+++.|...|. ++++++|+.... ..+..+|...  .+++.+.+.++|+|+.|++..   ..
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~atss~---~~   97 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAP---HP   97 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSS---SC
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecCCC---Cc
Confidence            5899999999999999999999999998 599999975333 3455566543  356777888999999998732   45


Q ss_pred             cccHHHHccC------CCCCEEEEcC
Q 026360          109 MFDKDRIAKM------KKGVLIVNNA  128 (240)
Q Consensus       109 ~i~~~~l~~m------k~gailIN~s  128 (240)
                      +++.+.++..      ++..++||.|
T Consensus        98 ii~~~~i~~~~~~r~~~~~~~iiDla  123 (159)
T d1gpja2          98 VIHVDDVREALRKRDRRSPILIIDIA  123 (159)
T ss_dssp             CBCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred             cccHhhhHHHHHhcccCCCeEEEeec
Confidence            6666655421      2345788876

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=2.6e-08  Score=79.64  Aligned_cols=114  Identities=14%  Similarity=0.096  Sum_probs=83.7

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH-----------h------------------cCceecCCHH
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-----------E------------------TGAKFEEDLD   87 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~-----------~------------------~g~~~~~~l~   87 (240)
                      ++|+|||.|.||+.+|..+...|++|+.||+++...+.+.           +                  ..+....++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~   84 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   84 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhH
Confidence            6999999999999999999999999999999753221110           0                  0123456888


Q ss_pred             hhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEee
Q 026360           88 TMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  153 (240)
Q Consensus        88 ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lD  153 (240)
                      +.+++||+|+=++|-+.+.+.-+-.+.-+.++++++|...+.+  +....+.+.+.. .=+..++-
T Consensus        85 ~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~ig~H  147 (192)
T d1f0ya2          85 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSS--LQITSIANATTR-QDRFAGLH  147 (192)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSS--SCHHHHHTTSSC-GGGEEEEE
T ss_pred             hhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcc--cccchhhhhccC-HhHEEeec
Confidence            9999999999999988788777777777778999988765544  445556665543 33444554

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.63  E-value=4.9e-08  Score=78.32  Aligned_cols=106  Identities=11%  Similarity=0.040  Sum_probs=74.6

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH-------------------h-cCceecCCHHhhcCcCCEE
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-------------------E-TGAKFEEDLDTMLPKCDIV   96 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~-------------------~-~g~~~~~~l~ell~~aDiV   96 (240)
                      |+|+|||+|.+|..+|..+...|++|++||.++...+...                   . ......+++++.++.||++
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i   80 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE
Confidence            6899999999999999999999999999998542211110                   0 1123456888999999999


Q ss_pred             EEcCCCCh---------hhhhccc--HHHHccCCCCCEEEEcCCCcccCHHHHHHHH
Q 026360           97 VVNTPLTE---------KTRGMFD--KDRIAKMKKGVLIVNNARGAIMDTQAVVDAC  142 (240)
Q Consensus        97 vl~lp~~~---------~t~~~i~--~~~l~~mk~gailIN~srg~~vd~~aL~~aL  142 (240)
                      ++|+|...         .....+.  ...++..+++.++|..|...+=..+.+...+
T Consensus        81 ~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~  137 (202)
T d1mv8a2          81 FICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPL  137 (202)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHH
T ss_pred             EEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhh
Confidence            99998321         0111221  1345567789999999998777676665443

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.60  E-value=1.6e-08  Score=80.71  Aligned_cols=96  Identities=21%  Similarity=0.280  Sum_probs=66.7

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc--------------CceecCCHHhhcCcCCEEEEc
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET--------------GAKFEEDLDTMLPKCDIVVVN   99 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~--------------g~~~~~~l~ell~~aDiVvl~   99 (240)
                      +.-++|+|||.|.+|.++|..|...|.+|..|++++...+.....              .+....+++++++++|+|+++
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiia   84 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFV   84 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEEC
T ss_pred             ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEc
Confidence            344689999999999999999999999999999864322211111              234456899999999999999


Q ss_pred             CCCChhhhhcccH---HH-HccCCCCCEEEEcCCC
Q 026360          100 TPLTEKTRGMFDK---DR-IAKMKKGVLIVNNARG  130 (240)
Q Consensus       100 lp~~~~t~~~i~~---~~-l~~mk~gailIN~srg  130 (240)
                      +| +...+.++..   .. ....+++..+|+++.|
T Consensus        85 vP-s~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKG  118 (189)
T d1n1ea2          85 IP-TQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKG  118 (189)
T ss_dssp             SC-HHHHHHHHHHHCHHHHHHHHHHTCCEEECCCS
T ss_pred             Cc-HHHHHHHHHHHHhhhhhhhccCCcEEEEEECC
Confidence            99 2333333221   00 1123567789999877

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=4.2e-08  Score=75.32  Aligned_cols=92  Identities=16%  Similarity=0.172  Sum_probs=66.3

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc-------eecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA-------KFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~-------~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      +||+|||.|.||..+|..|...|++|.+++|.+.........+.       ....+..+.+..+|+|+++++. .++...
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka-~~~~~~   79 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKA-WQVSDA   79 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCG-GGHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecc-cchHHH
Confidence            68999999999999999999999999999987654332211111       1122445667899999999983 344443


Q ss_pred             ccHHHHccCCCCCEEEEcCCC
Q 026360          110 FDKDRIAKMKKGVLIVNNARG  130 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg  130 (240)
                      + +.....+.+++.++.+..|
T Consensus        80 ~-~~l~~~~~~~~~Iv~~qNG   99 (167)
T d1ks9a2          80 V-KSLASTLPVTTPILLIHNG   99 (167)
T ss_dssp             H-HHHHTTSCTTSCEEEECSS
T ss_pred             H-HhhccccCcccEEeeccCc
Confidence            3 3455667889999888766

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.56  E-value=3.7e-08  Score=71.85  Aligned_cols=92  Identities=13%  Similarity=0.086  Sum_probs=66.0

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhH--HHhcCceec--CCHHhhcCcCCEEEEcCCCChhhh
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL--EKETGAKFE--EDLDTMLPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~--~~~~g~~~~--~~l~ell~~aDiVvl~lp~~~~t~  107 (240)
                      .+|+|++|.|||.|.+|.+-|+.|..+|++|+++++...+...  ....++...  .--++.+..+++|+.+...     
T Consensus         8 l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~d-----   82 (113)
T d1pjqa1           8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDD-----   82 (113)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSC-----
T ss_pred             EEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCCC-----
Confidence            4799999999999999999999999999999999986532221  112223211  1123457788988887652     


Q ss_pred             hcccHHHHccCCCCCEEEEcC
Q 026360          108 GMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~s  128 (240)
                      ..++.+..+.+|+..++||++
T Consensus        83 ~~~n~~i~~~a~~~~ilVNv~  103 (113)
T d1pjqa1          83 DTVNQRVSDAAESRRIFCNVV  103 (113)
T ss_dssp             HHHHHHHHHHHHHTTCEEEET
T ss_pred             HHHHHHHHHHHHHcCCEEEeC
Confidence            334566667788888999975

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.53  E-value=6.9e-08  Score=76.12  Aligned_cols=92  Identities=17%  Similarity=0.222  Sum_probs=64.3

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc----------------CceecCCHHhhcCcCCEEEEcC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET----------------GAKFEEDLDTMLPKCDIVVVNT  100 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~----------------g~~~~~~l~ell~~aDiVvl~l  100 (240)
                      ++|+|||.|.+|.++|..|...|.+|..|.|... .+.....                .+...++++++++++|+|++++
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~-~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~av   79 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFD-TEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGV   79 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGG-HHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEeccc-HHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhccc
Confidence            6899999999999999999999999999987431 1111110                0123467889999999999999


Q ss_pred             CCChhhhhcccHHHHccCCCCCEEEEcCCCcc
Q 026360          101 PLTEKTRGMFDKDRIAKMKKGVLIVNNARGAI  132 (240)
Q Consensus       101 p~~~~t~~~i~~~~l~~mk~gailIN~srg~~  132 (240)
                      |. ...+.++ .+....+++ ..+|.++.|..
T Consensus        80 ps-~~~~~~~-~~l~~~l~~-~~ii~~tkg~~  108 (180)
T d1txga2          80 ST-DGVLPVM-SRILPYLKD-QYIVLISKGLI  108 (180)
T ss_dssp             CG-GGHHHHH-HHHTTTCCS-CEEEECCCSEE
T ss_pred             ch-hhhHHHH-Hhhcccccc-ceecccccCcc
Confidence            93 3344443 345555655 45666677754

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.53  E-value=4.6e-08  Score=76.04  Aligned_cols=91  Identities=24%  Similarity=0.214  Sum_probs=69.8

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec------CC-HHhhcCcCCEEEEcCCCChhhh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE------ED-LDTMLPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~------~~-l~ell~~aDiVvl~lp~~~~t~  107 (240)
                      .|.+|.|+|.|.+|...++.++.+|++|+++|+++.+.+.++++|+..+      .+ .+......|+++.++.....  
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~--  104 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTD--  104 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTT--
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCcc--
Confidence            5899999999999999999999999999999998888888888886421      11 22445568999888763221  


Q ss_pred             hcccHHHHccCCCCCEEEEcC
Q 026360          108 GMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~s  128 (240)
                       ......++.++++..++.++
T Consensus       105 -~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2         105 -IDFNIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             -CCTTTGGGGEEEEEEEEECC
T ss_pred             -chHHHHHHHhhccceEEEec
Confidence             11234577889999999987

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=98.44  E-value=9.3e-08  Score=75.83  Aligned_cols=113  Identities=12%  Similarity=0.089  Sum_probs=80.7

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-----------cC-------------ceecCCHHhhcCc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----------TG-------------AKFEEDLDTMLPK   92 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~~~l~ell~~   92 (240)
                      ++|+|||.|.||+.+|..+...|++|++||+++...+....           .+             +....+. +.+.+
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~   83 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFGN   83 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccc-ccccc
Confidence            57999999999999999999999999999997533221100           01             1222233 34789


Q ss_pred             CCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEee
Q 026360           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGD  153 (240)
Q Consensus        93 aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lD  153 (240)
                      +|+|+-++|-+.+.+.-+.++.-+.++++++|...+.+  +....|.+.++. .=+..++-
T Consensus        84 adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~--l~i~~la~~~~~-p~r~~g~H  141 (186)
T d1wdka3          84 VDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST--ISISLLAKALKR-PENFVGMH  141 (186)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS--SCHHHHGGGCSC-GGGEEEEE
T ss_pred             cceeeeeecchHHHHHHHHHHHHhhcCCCeeEEecccc--ccHHHHHHhccC-chheEeec
Confidence            99999999988888877777888889999999776655  444666666642 33444555

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.36  E-value=7.8e-07  Score=70.44  Aligned_cols=134  Identities=12%  Similarity=0.125  Sum_probs=87.7

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh------------------cCceecCCHHhhcCcCCEEEE
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE------------------TGAKFEEDLDTMLPKCDIVVV   98 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~------------------~g~~~~~~l~ell~~aDiVvl   98 (240)
                      |+|+|||+|.+|..+|..+. .|++|++||.++...+....                  .......+......++|++++
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v   79 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence            68999999999999998775 69999999986532221110                  112223455666788999999


Q ss_pred             cCCCChhhhh-c--c-----cHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCC---C
Q 026360           99 NTPLTEKTRG-M--F-----DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPW---R  167 (240)
Q Consensus        99 ~lp~~~~t~~-~--i-----~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l---~  167 (240)
                      ++|....... .  +     ..+.+...+++.++|--+.-.+=..+.+...+.+.++.      +.+|-..+.+-+   .
T Consensus        80 ~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~~~~~------~~PE~i~~G~ai~d~~  153 (196)
T d1dlja2          80 ATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRII------FSPEFLRESKALYDNL  153 (196)
T ss_dssp             CCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCEE------ECCCCCCTTSTTHHHH
T ss_pred             cCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeeccchhhhc------cchhhcchhhhHhhcc
Confidence            9985432211 1  1     11223345678888888888777788888887776654      466766655544   4


Q ss_pred             CCCCeEEcCC
Q 026360          168 YMPNQAMTPH  177 (240)
Q Consensus       168 ~~~nv~~TPH  177 (240)
                      ..|++++--+
T Consensus       154 ~p~riv~G~~  163 (196)
T d1dlja2         154 YPSRIIVSCE  163 (196)
T ss_dssp             SCSCEEEECC
T ss_pred             CCCEEEEeCC
Confidence            5566665443

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=98.35  E-value=2e-07  Score=69.36  Aligned_cols=72  Identities=17%  Similarity=0.249  Sum_probs=54.0

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCcee-------cCCHHhh-cCcCCEEEEcCCCChhhhh
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTM-LPKCDIVVVNTPLTEKTRG  108 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~el-l~~aDiVvl~lp~~~~t~~  108 (240)
                      |++.|+|+|.+|+.+|+.|...|.+|+++|.++...+.+...+...       .+.++++ ++++|.+++++|.+..+..
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~~~   80 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQAST   80 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHHhHH
Confidence            6789999999999999999999999999998765444444444322       1233344 7889999999996655433

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.35  E-value=2.1e-07  Score=65.37  Aligned_cols=67  Identities=21%  Similarity=0.183  Sum_probs=48.3

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChh--HHHhcCce--ecCCHHhhcCcCCEEEEcC
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ--LEKETGAK--FEEDLDTMLPKCDIVVVNT  100 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~--~~~~~g~~--~~~~l~ell~~aDiVvl~l  100 (240)
                      +++||+|+|+|+|..|.++|+.|...|++|+++|.+.....  .... +..  ....-++.+.+.|+|+++-
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~vi~SP   72 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPE-AVERHTGSLNDEWLMAADLIVASP   72 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCT-TSCEEESBCCHHHHHHCSEEEECT
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhh-ccceeecccchhhhccCCEEEECC
Confidence            57899999999999999999999999999999997543221  1111 221  1112245667889888763

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=98.25  E-value=2e-06  Score=70.20  Aligned_cols=109  Identities=22%  Similarity=0.263  Sum_probs=81.0

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhH-HHhcCceecCCHHhhc-CcCCEEEEcCCCChhhhhc
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL-EKETGAKFEEDLDTML-PKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~-~~~~g~~~~~~l~ell-~~aDiVvl~lp~~~~t~~~  109 (240)
                      .+|.|++|.|-|+|++|+.+|+.|...|++|++.|.+...... ....|.... +.++++ ..||+++-|.-     .+.
T Consensus        35 ~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~-~~~~~~~~~cDIl~PcA~-----~~~  108 (230)
T d1leha1          35 DSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCAL-----GAV  108 (230)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECSC-----SCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCccc-CCcccccccccEeccccc-----ccc
Confidence            3689999999999999999999999999999999976433332 233566665 555554 56999998874     677


Q ss_pred             ccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360          110 FDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      |+.+....++- .+++-.+...+.+.++- +.|.++.|.
T Consensus       109 I~~~~~~~l~a-k~Ive~ANn~~t~~ea~-~~L~~rGI~  145 (230)
T d1leha1         109 LNDFTIPQLKA-KVIAGSADNQLKDPRHG-KYLHELGIV  145 (230)
T ss_dssp             BSTTHHHHCCC-SEECCSCSCCBSSHHHH-HHHHHHTCE
T ss_pred             cChHHhhccCc-cEEEecccCCCCCchHH-HHHHhhCcE
Confidence            88888888874 46667776888777654 556555554

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=4e-06  Score=65.26  Aligned_cols=83  Identities=22%  Similarity=0.278  Sum_probs=66.1

Q ss_pred             ccccCCCeEEEEccCh-HHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~-iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      +.+++||++.|||-+. +|+.+|..|...|+.|+.++...              .++.+.+++||+++.+++.    .++
T Consensus        34 ~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t--------------~~l~~~~~~aDivi~a~G~----~~~   95 (170)
T d1a4ia1          34 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT--------------AHLDEEVNKGDILVVATGQ----PEM   95 (170)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SSHHHHHTTCSEEEECCCC----TTC
T ss_pred             CcccccceEEEEecCCccchHHHHHHHhccCceEEEeccc--------------ccHHHHHhhccchhhcccc----ccc
Confidence            4579999999999875 99999999999999999988642              2566778899999999973    356


Q ss_pred             ccHHHHccCCCCCEEEEcCCCcccC
Q 026360          110 FDKDRIAKMKKGVLIVNNARGAIMD  134 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg~~vd  134 (240)
                      +..+   ..|+|+++||++-..+.|
T Consensus        96 i~~~---~vk~g~iviDvgi~~~~~  117 (170)
T d1a4ia1          96 VKGE---WIKPGAIVIDCGINYVPD  117 (170)
T ss_dssp             BCGG---GSCTTCEEEECCCBC---
T ss_pred             cccc---cccCCCeEeccCcccccc
Confidence            6654   479999999998654433

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=1e-06  Score=68.09  Aligned_cols=89  Identities=17%  Similarity=0.243  Sum_probs=68.2

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec---CCH---HhhcCcCCEEEEcCCCChhhhh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE---EDL---DTMLPKCDIVVVNTPLTEKTRG  108 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~---~~l---~ell~~aDiVvl~lp~~~~t~~  108 (240)
                      .|.+|.|+|.|.+|...++.++.+|+++++.++++.+.+.++++|+..+   .+.   ....+..|+++-++.....   
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~~---  106 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHN---  106 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCC---
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecchh---
Confidence            4899999999999999999999999999999987767777788886422   111   2334568999998863221   


Q ss_pred             cccHHHHccCCCCCEEEEcC
Q 026360          109 MFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       109 ~i~~~~l~~mk~gailIN~s  128 (240)
                        -...+..++++..++.++
T Consensus       107 --~~~~~~~l~~~G~iv~~G  124 (168)
T d1uufa2         107 --LDDFTTLLKRDGTMTLVG  124 (168)
T ss_dssp             --HHHHHTTEEEEEEEEECC
T ss_pred             --HHHHHHHHhcCCEEEEec
Confidence              235677889999999887

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=98.16  E-value=2.2e-06  Score=66.40  Aligned_cols=79  Identities=18%  Similarity=0.344  Sum_probs=65.1

Q ss_pred             ccccCCCeEEEEccCh-HHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~-iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      +.++.||++.|||-+. +|+.++..|...|+.|+.++...              .++.+.+++||+|+.++..    .++
T Consensus        32 ~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t--------------~~l~~~~~~ADivI~a~G~----p~~   93 (166)
T d1b0aa1          32 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT--------------KNLRHHVENADLLIVAVGK----PGF   93 (166)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC--------------SCHHHHHHHCSEEEECSCC----TTC
T ss_pred             CcccccceEEEEeccccccHHHHHHHHHhhcccccccccc--------------chhHHHHhhhhHhhhhccC----ccc
Confidence            4578999999999886 99999999999999999887532              3667778999999999972    366


Q ss_pred             ccHHHHccCCCCCEEEEcCCC
Q 026360          110 FDKDRIAKMKKGVLIVNNARG  130 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg  130 (240)
                      +..+   .+|+|+++||++--
T Consensus        94 i~~~---~vk~g~vvIDvGi~  111 (166)
T d1b0aa1          94 IPGD---WIKEGAIVIDVGIN  111 (166)
T ss_dssp             BCTT---TSCTTCEEEECCCE
T ss_pred             cccc---ccCCCcEEEecCce
Confidence            7654   46899999999844

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.16  E-value=6.3e-07  Score=68.85  Aligned_cols=89  Identities=17%  Similarity=0.162  Sum_probs=60.3

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-cCce--------ecCCHHhhcCcCCEEEEcCCCChh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-TGAK--------FEEDLDTMLPKCDIVVVNTPLTEK  105 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-~g~~--------~~~~l~ell~~aDiVvl~lp~~~~  105 (240)
                      ++|+|.|||.|.||+.+|+.|...|++|+++||+........+ .+..        .....++.+...|+++.++|....
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~   80 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFH   80 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhh
Confidence            4799999999999999999999999999999998644443332 2211        112345678889999998884322


Q ss_pred             hhhcccHHHHccCCCCCEEEEcC
Q 026360          106 TRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      .  .+   .....+.+..+++++
T Consensus        81 ~--~~---~~~~~~~~~~~~~~~   98 (182)
T d1e5qa1          81 A--TV---IKSAIRQKKHVVTTS   98 (182)
T ss_dssp             H--HH---HHHHHHHTCEEECSS
T ss_pred             h--HH---HHHHHhhccceeecc
Confidence            1  11   112234556677765

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=5.4e-06  Score=64.20  Aligned_cols=93  Identities=14%  Similarity=0.181  Sum_probs=62.0

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh----cC-ceecCCHHh-hcCcCCEEEEcCCCChh
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE----TG-AKFEEDLDT-MLPKCDIVVVNTPLTEK  105 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~----~g-~~~~~~l~e-ll~~aDiVvl~lp~~~~  105 (240)
                      .++.||+|.|+|.|..+++++..|...|.+|++++|+....+...+    .+ +... ++++ ...++|+|+.|+|....
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~-~~~~~~~~~~dliIN~Tp~G~~   92 (170)
T d1nyta1          14 FIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQAL-SMDELEGHEFDLIINATSSGIS   92 (170)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEEC-CSGGGTTCCCSEEEECCSCGGG
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhccccccc-ccccccccccceeecccccCcc
Confidence            4678999999999999999999999999999999997643332221    11 2233 3333 34679999999996543


Q ss_pred             hhhcccHHHHccCCCCCEEEEc
Q 026360          106 TRGMFDKDRIAKMKKGVLIVNN  127 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailIN~  127 (240)
                      ..  .....++.++++.+++|+
T Consensus        93 ~~--~~~~~~~~~~~~~~v~D~  112 (170)
T d1nyta1          93 GD--IPAIPSSLIHPGIYCYDM  112 (170)
T ss_dssp             TC--CCCCCGGGCCTTCEEEES
T ss_pred             cC--CCCCcHHHhccCcEEEEe
Confidence            21  111123346666666665

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=3.6e-06  Score=64.98  Aligned_cols=89  Identities=22%  Similarity=0.215  Sum_probs=68.7

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceec-----CCHHhhc--------CcCCEEEEcC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDTML--------PKCDIVVVNT  100 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell--------~~aDiVvl~l  100 (240)
                      .|.+|.|+|.|.+|...++.++..|+ +|++.|+++.+.+.++++|+..+     .+..+..        ...|+++-++
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~  105 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT  105 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEecc
Confidence            47899999999999999999999999 79999998877788888886432     2333222        3589999998


Q ss_pred             CCChhhhhcccHHHHccCCCCCEEEEcC
Q 026360          101 PLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       101 p~~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      +. +.   . -+..++.++++..++.++
T Consensus       106 G~-~~---~-~~~a~~~~~~gG~iv~~G  128 (171)
T d1pl8a2         106 GA-EA---S-IQAGIYATRSGGTLVLVG  128 (171)
T ss_dssp             CC-HH---H-HHHHHHHSCTTCEEEECS
T ss_pred             CC-ch---h-HHHHHHHhcCCCEEEEEe
Confidence            73 22   1 235677899999999887

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.09  E-value=5.2e-06  Score=61.48  Aligned_cols=87  Identities=16%  Similarity=0.114  Sum_probs=59.9

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH-hcCceec----CCHH---hh-cCcCCEEEEcCCCChhhh
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ETGAKFE----EDLD---TM-LPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~-~~g~~~~----~~l~---el-l~~aDiVvl~lp~~~~t~  107 (240)
                      ++|.|+|+|.+|+.+|+.|...|.+|++.|.++...+... ..+....    .+.+   ++ ++++|.++.+++..+.  
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~~--   78 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEV--   78 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHH--
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHHH--
Confidence            5899999999999999999999999999998764443333 3354321    2222   22 6789999988885433  


Q ss_pred             hcccHHHHccCCCCCEEE
Q 026360          108 GMFDKDRIAKMKKGVLIV  125 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailI  125 (240)
                      +++-....+.+.+..+++
T Consensus        79 N~~~~~~~k~~~~~~iI~   96 (132)
T d1lssa_          79 NLMSSLLAKSYGINKTIA   96 (132)
T ss_dssp             HHHHHHHHHHTTCCCEEE
T ss_pred             HHHHHHHHHHcCCceEEE
Confidence            334444555666666554

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=98.02  E-value=4.4e-06  Score=64.21  Aligned_cols=89  Identities=19%  Similarity=0.230  Sum_probs=66.4

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-------CCHHhh---c-----CcCCEEEEc
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-------EDLDTM---L-----PKCDIVVVN   99 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-------~~l~el---l-----~~aDiVvl~   99 (240)
                      .|.+|.|+|.|.||...++.++.+|++|+++|+++.+.+.++++|....       .+.++.   +     ...|+|+-+
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid~  105 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC  105 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeeec
Confidence            5789999999999999999999999999999998777777787775321       122211   1     347999888


Q ss_pred             CCCChhhhhcccHHHHccCCCCCEEEEcC
Q 026360          100 TPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       100 lp~~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      +.. +.+    -...++.++++..++.++
T Consensus       106 ~g~-~~~----~~~a~~~~~~~G~iv~~G  129 (170)
T d1e3ja2         106 SGN-EKC----ITIGINITRTGGTLMLVG  129 (170)
T ss_dssp             SCC-HHH----HHHHHHHSCTTCEEEECS
T ss_pred             CCC-hHH----HHHHHHHHhcCCceEEEe
Confidence            862 221    234567789999999887

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=98.01  E-value=2.3e-05  Score=64.19  Aligned_cols=108  Identities=21%  Similarity=0.347  Sum_probs=75.6

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCC--------CChhHH----------------HhcCceecCCHHh
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK--------MDPQLE----------------KETGAKFEEDLDT   88 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~--------~~~~~~----------------~~~g~~~~~~l~e   88 (240)
                      +|.|++|.|-|+|++|+.+|+.|...|++|++++...        .+.+..                ...+.....+.++
T Consensus        28 ~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (242)
T d1v9la1          28 GIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDA  107 (242)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTG
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcch
Confidence            6899999999999999999999999999998766321        111111                1123333334455


Q ss_pred             hc-CcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360           89 ML-PKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus        89 ll-~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      ++ ..||+++-|..     .+.|+.+...+++- .+|+-.+-+++ +.++ .+.|.++.|.
T Consensus       108 i~~~~~DIliPcA~-----~~~I~~~~a~~i~a-k~IvegAN~p~-t~~a-~~~L~~rgI~  160 (242)
T d1v9la1         108 IFKLDVDIFVPAAI-----ENVIRGDNAGLVKA-RLVVEGANGPT-TPEA-ERILYERGVV  160 (242)
T ss_dssp             GGGCCCSEEEECSC-----SSCBCTTTTTTCCC-SEEECCSSSCB-CHHH-HHHHHTTTCE
T ss_pred             hccccccEEeecch-----hccccHHHHHhccc-CEEEecCCCCC-ChhH-HHHHHhCCeE
Confidence            55 46999999875     56777777777764 46666777765 6666 4778777776

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=98.00  E-value=5.9e-06  Score=64.69  Aligned_cols=96  Identities=16%  Similarity=0.193  Sum_probs=63.7

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHH----hc----Cce----ec---CCHHhhcCcCC
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEK----ET----GAK----FE---EDLDTMLPKCD   94 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~----~~----g~~----~~---~~l~ell~~aD   94 (240)
                      +.+++|++|.|+|.|..|++++..|...|. ++++++|++...+.+.    .+    +..    ..   .++.+.+.++|
T Consensus        13 ~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   92 (182)
T d1vi2a1          13 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASAD   92 (182)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccc
Confidence            346899999999999999999999998888 5889999865544222    11    111    11   12445678999


Q ss_pred             EEEEcCCCChhh---hhcccHHHHccCCCCCEEEEcC
Q 026360           95 IVVVNTPLTEKT---RGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus        95 iVvl~lp~~~~t---~~~i~~~~l~~mk~gailIN~s  128 (240)
                      +|+.++|.....   ..++.  .+..++++.+++|+.
T Consensus        93 iiIN~Tp~G~~~~~~~~~~~--~~~~~~~~~~v~Di~  127 (182)
T d1vi2a1          93 ILTNGTKVGMKPLENESLVN--DISLLHPGLLVTECV  127 (182)
T ss_dssp             EEEECSSTTSTTSCSCCSCC--CGGGSCTTCEEEECC
T ss_pred             eeccccCCccccccchhhhh--HHHhhhcchhhHHhh
Confidence            999999954321   11111  134567777766663

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.98  E-value=3.1e-06  Score=66.02  Aligned_cols=93  Identities=18%  Similarity=0.249  Sum_probs=64.6

Q ss_pred             ccccCCCeEEEEccCh-HHHHHHHHhccCCCEEEEEcCCCCChhHHHhc-------Cce-----ecCCHHhhcCcCCEEE
Q 026360           31 AYDLEGKTVGTVGCGR-IGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-------GAK-----FEEDLDTMLPKCDIVV   97 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~-iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~-------g~~-----~~~~l~ell~~aDiVv   97 (240)
                      +.+++||++.|||-+. +|+.+|..|...|+.|+.++..... ......       +..     ..+.+++...++|+|+
T Consensus        24 g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvI  102 (171)
T d1edza1          24 GNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQ-KFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVI  102 (171)
T ss_dssp             TCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEE-EEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEE
T ss_pred             cCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEecccccc-ccccccceeeeeeccccccccchhHHhhccccCCEEE
Confidence            5689999999999886 5999999999999999988754211 000000       000     0123667778999999


Q ss_pred             EcCCCChhhhhc-ccHHHHccCCCCCEEEEcCCCc
Q 026360           98 VNTPLTEKTRGM-FDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus        98 l~lp~~~~t~~~-i~~~~l~~mk~gailIN~srg~  131 (240)
                      .++|..    ++ +..+   ..|+|+++||+|-..
T Consensus       103 savG~p----~~~i~~d---~ik~GavvIDvGi~~  130 (171)
T d1edza1         103 TGVPSE----NYKFPTE---YIKEGAVCINFACTK  130 (171)
T ss_dssp             ECCCCT----TCCBCTT---TSCTTEEEEECSSSC
T ss_pred             EccCCC----ccccChh---hcccCceEeeccccc
Confidence            999832    32 4443   369999999998553

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=1e-05  Score=61.92  Aligned_cols=106  Identities=16%  Similarity=0.250  Sum_probs=66.3

Q ss_pred             CeEEEEccChHHHH-HHHHhccC-CCEEE-EEcCCCCChhH-HHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccH
Q 026360           37 KTVGTVGCGRIGKL-LLQRLKPF-NCNLL-YHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (240)
Q Consensus        37 ~~vgIIG~G~iG~~-~A~~l~~~-G~~V~-~~d~~~~~~~~-~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~  112 (240)
                      .+|||||+|.+|+. .+..++.. +++++ ++|+++..... ....++...+++++++++.|+|++++|...  ..-+-.
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~~--h~~~~~   79 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTAS--HFDVVS   79 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTH--HHHHHH
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccchh--cccccc
Confidence            47999999999986 46666654 67754 67887655443 455677778899999999999999999442  222222


Q ss_pred             HHHccCCCC-CEEEEc-CCCcccCHHHHHHHHHhCCc
Q 026360          113 DRIAKMKKG-VLIVNN-ARGAIMDTQAVVDACSSGHI  147 (240)
Q Consensus       113 ~~l~~mk~g-ailIN~-srg~~vd~~aL~~aL~~g~i  147 (240)
                      ..+   +.| .+++.- ---.+-+...|.++.++.++
T Consensus        80 ~al---~~gk~V~~EKPla~~~~e~~~l~~~a~~~~~  113 (164)
T d1tlta1          80 TLL---NAGVHVCVDKPLAENLRDAERLVELAARKKL  113 (164)
T ss_dssp             HHH---HTTCEEEEESSSCSSHHHHHHHHHHHHHTTC
T ss_pred             ccc---cccceeeccccccCCHHHHHHHHHHHHHcCC
Confidence            333   333 244331 11223445556666655443

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.93  E-value=2.9e-06  Score=66.24  Aligned_cols=89  Identities=17%  Similarity=0.215  Sum_probs=63.8

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceec-----CCHHhhc---------CcCCEEEEc
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDTML---------PKCDIVVVN   99 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell---------~~aDiVvl~   99 (240)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.|+++.+.+.++++|+..+     .+..+..         ...|+|+-+
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvid~  107 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEA  107 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEEC
T ss_pred             CCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEeec
Confidence            58999999999999999999999998 79999998767777788876321     2322221         136888877


Q ss_pred             CCCChhhhhcccHHHHccCCCCCEEEEcC
Q 026360          100 TPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       100 lp~~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      +.....     ....++.++++..++-++
T Consensus       108 vG~~~~-----~~~a~~~l~~~G~iv~~G  131 (182)
T d1vj0a2         108 TGDSRA-----LLEGSELLRRGGFYSVAG  131 (182)
T ss_dssp             SSCTTH-----HHHHHHHEEEEEEEEECC
T ss_pred             CCchhH-----HHHHHHHhcCCCEEEEEe
Confidence            753211     134566678888777765

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.92  E-value=4e-06  Score=65.31  Aligned_cols=89  Identities=18%  Similarity=0.188  Sum_probs=66.4

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceec-----CCHHhhc------CcCCEEEEcCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDTML------PKCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell------~~aDiVvl~lp~  102 (240)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.|+++.+.+.++++|+..+     .++.+.+      ...|+|+-+++.
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g~  106 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGG  106 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECSSC
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEccCC
Confidence            48899999999999999999999998 69999988766777888886322     2222221      227999999873


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEEcC
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      ..    .+ .+.+..++|+..++-++
T Consensus       107 ~~----~~-~~a~~~~~~~G~iv~~G  127 (174)
T d1jqba2         107 SE----TL-SQAVKMVKPGGIISNIN  127 (174)
T ss_dssp             TT----HH-HHHHHHEEEEEEEEECC
T ss_pred             HH----HH-HHHHHHHhcCCEEEEEe
Confidence            22    12 35567789999998887

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=97.90  E-value=1.6e-05  Score=61.35  Aligned_cols=84  Identities=15%  Similarity=0.185  Sum_probs=57.5

Q ss_pred             CCeEEEEccChHHHHHHHHhccC-CCEEE-EEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHH
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  113 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~-G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~  113 (240)
                      ..+|||||+|.||+.+++.+++. +++++ ++|++....   ...+.....+.+++..+.|+|++++|.....     .-
T Consensus         3 kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~---~~~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~-----~~   74 (170)
T d1f06a1           3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLD---TKTPVFDVADVDKHADDVDVLFLCMGSATDI-----PE   74 (170)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCS---SSSCEEEGGGGGGTTTTCSEEEECSCTTTHH-----HH
T ss_pred             cceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccc---cccccccchhhhhhccccceEEEeCCCcccH-----HH
Confidence            45799999999999999999875 67755 556654322   2234555667888889999999999954321     12


Q ss_pred             HHccCCCCCEEEEc
Q 026360          114 RIAKMKKGVLIVNN  127 (240)
Q Consensus       114 ~l~~mk~gailIN~  127 (240)
                      ..+.++.|.-+|.+
T Consensus        75 a~~aL~aG~~vv~~   88 (170)
T d1f06a1          75 QAPKFAQFACTVDT   88 (170)
T ss_dssp             HHHHHTTTSEEECC
T ss_pred             HHHHHHCCCcEEEe
Confidence            23345666655544

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.89  E-value=1.8e-06  Score=66.29  Aligned_cols=89  Identities=20%  Similarity=0.244  Sum_probs=64.2

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-----CCHHh----hcCcCCEEEEcCCCChh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDT----MLPKCDIVVVNTPLTEK  105 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~e----ll~~aDiVvl~lp~~~~  105 (240)
                      .|.+|.|+|.|.+|...++.++..|.+|++.|+++.+.+.++++|+..+     .+..+    .....|.++.+.... .
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~~~-~  105 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAVSN-S  105 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCSCH-H
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccccccccc-h
Confidence            4889999999999999999999999999999998766777888886421     12222    223345566665432 2


Q ss_pred             hhhcccHHHHccCCCCCEEEEcC
Q 026360          106 TRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailIN~s  128 (240)
                         .+ ...++.++++..++.++
T Consensus       106 ---~~-~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2         106 ---AF-GQAIGMARRGGTIALVG  124 (166)
T ss_dssp             ---HH-HHHHTTEEEEEEEEECC
T ss_pred             ---HH-HHHHHHhcCCcEEEEEE
Confidence               12 35677888888888886

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=97.89  E-value=4.8e-05  Score=62.24  Aligned_cols=111  Identities=13%  Similarity=0.135  Sum_probs=84.0

Q ss_pred             CeEEEEccCh--HHHHHHH------HhccCCCEEEEEcCCCCC---------hh------------HHH-----------
Q 026360           37 KTVGTVGCGR--IGKLLLQ------RLKPFNCNLLYHDRVKMD---------PQ------------LEK-----------   76 (240)
Q Consensus        37 ~~vgIIG~G~--iG~~~A~------~l~~~G~~V~~~d~~~~~---------~~------------~~~-----------   76 (240)
                      ++++++|.|.  +|..+++      .+...|..|+..|-++.+         .+            ..+           
T Consensus        41 ~~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~  120 (242)
T d2b0ja2          41 HSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIH  120 (242)
T ss_dssp             CHHHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEE
T ss_pred             eeeeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchhh
Confidence            3466787775  7777776      356778888888765311         00            000           


Q ss_pred             -----hcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360           77 -----ETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus        77 -----~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                           +.|++..++..|+++++|+|++++|..+.+..++ ++....+++|++++|+|..+......+.+.+++..+.
T Consensus       121 ~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi-~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~  196 (242)
T d2b0ja2         121 LVHPEDVGLKVTSDDREAVEGADIVITWLPKGNKQPDII-KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLN  196 (242)
T ss_dssp             SSCGGGGTCEEESCHHHHHTTCSEEEECCTTCTTHHHHH-HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSE
T ss_pred             cCCHHHCCCEEECCHHHHHhcCCeEEEeeecHHHHHHHH-HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCE
Confidence                 1245566889999999999999999776666666 5788999999999999999999999999999888777

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=97.88  E-value=3.2e-05  Score=63.86  Aligned_cols=111  Identities=17%  Similarity=0.162  Sum_probs=71.0

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEEEE--------cCCCCChhHH-------------------HhcCceecC
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH--------DRVKMDPQLE-------------------KETGAKFEE   84 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~--------d~~~~~~~~~-------------------~~~g~~~~~   84 (240)
                      .+|.|+|+.|-|+|++|..+|+.|...|++|+++        |+...+.+..                   ...+.+.. 
T Consensus        32 ~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-  110 (255)
T d1bgva1          32 DTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFF-  110 (255)
T ss_dssp             CCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEE-
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceee-
Confidence            4689999999999999999999999999998754        3332222111                   11223332 


Q ss_pred             CHHh-hcCcCCEEEEcCCCChhhhhcccHHHHccCCC-CCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360           85 DLDT-MLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKK-GVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus        85 ~l~e-ll~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~-gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      +.++ +-.+||+++-|.     +.+.|+.+..+.++. ++.+|--+-...++.++....|+++.|.
T Consensus       111 ~~~~~~~~~~DiliPcA-----~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~ea~~~ll~~~gI~  171 (255)
T d1bgva1         111 PGEKPWGQKVDIIMPCA-----TQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRFLMQQPNMV  171 (255)
T ss_dssp             ETCCGGGSCCSEEECCS-----CTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHHHHHHHHCTTCE
T ss_pred             chhhcccccccEEeecc-----ccccccHHHHHhhhhcCceEEecCCCCCcchHHHHHHHHhcCCE
Confidence            2222 335799988775     467788887777763 4534444444445555655566766655

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.79  E-value=7e-06  Score=63.77  Aligned_cols=71  Identities=17%  Similarity=0.070  Sum_probs=50.8

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHH-Hhc----CceecCCHHhhcCcCCEEEEcCCCC
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE-KET----GAKFEEDLDTMLPKCDIVVVNTPLT  103 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~-~~~----g~~~~~~l~ell~~aDiVvl~lp~~  103 (240)
                      .+.|++|.|+|.|..|++++..|...+.+|++++|+..+.+.. ..+    .+......+..+.++|+|+.|+|..
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g   90 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAG   90 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeeccccc
Confidence            5789999999999999999999988788999999976433322 111    1222222223467899999999954

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.79  E-value=0.00017  Score=58.52  Aligned_cols=108  Identities=19%  Similarity=0.235  Sum_probs=75.6

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhc-cCCCEEEEEcCC--------CCChhHHH----h-------cCceecCCHHhhcC
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRV--------KMDPQLEK----E-------TGAKFEEDLDTMLP   91 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~-~~G~~V~~~d~~--------~~~~~~~~----~-------~g~~~~~~l~ell~   91 (240)
                      .+++|++|.|-|+|++|+.+|+.|. ..|++|++++.+        ..+.....    .       .+.+.. +.++++.
T Consensus        27 ~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~  105 (234)
T d1b26a1          27 IDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERI-TNEELLE  105 (234)
T ss_dssp             CCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEE-CHHHHHT
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceee-ccccccc
Confidence            4689999999999999999999995 679998876522        22221111    1       122333 4566665


Q ss_pred             -cCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360           92 -KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus        92 -~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                       .||+++-|.-     .+.|+.+....++- .+++-.+-+++ ..++ .+.|.++.|.
T Consensus       106 ~~~DI~~PcA~-----~~~I~~~~a~~l~~-~~I~e~AN~p~-t~~a-~~~L~~rgI~  155 (234)
T d1b26a1         106 LDVDILVPAAL-----EGAIHAGNAERIKA-KAVVEGANGPT-TPEA-DEILSRRGIL  155 (234)
T ss_dssp             SCCSEEEECSC-----TTCBCHHHHTTCCC-SEEECCSSSCB-CHHH-HHHHHHTTCE
T ss_pred             cccceeecchh-----cccccHHHHHHhhh-ceEeecCCCCC-CHHH-HHHHHHCCeE
Confidence             7999988863     67899999999885 46777777765 5555 4778777776

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.78  E-value=3.8e-05  Score=59.12  Aligned_cols=66  Identities=21%  Similarity=0.218  Sum_probs=50.2

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhH-HHhcCceecCCHHhhcCcCCEEEEcCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-EKETGAKFEEDLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~-~~~~g~~~~~~l~ell~~aDiVvl~lp~  102 (240)
                      ++++|.|+|.|..|++++..|+..|+ +|.+++|+....+. ....+.....+..  ..++|+|+.|+|.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~~--~~~~DliINaTpi   83 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSI   83 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSST
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhccc--ccchhhheecccc
Confidence            68999999999999999999999997 69999997643333 2334554443332  3579999999984

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.76  E-value=4.9e-05  Score=57.93  Aligned_cols=95  Identities=22%  Similarity=0.229  Sum_probs=61.2

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhH-HHh-------cCc----eecCCHHhhcCcCCEEEEcCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-EKE-------TGA----KFEEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~-~~~-------~g~----~~~~~l~ell~~aDiVvl~lp  101 (240)
                      +-+||+|||.|.+|..+|..+...+. +++.+|.++...+. +..       .+.    ....+.++.+++||+|+++..
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvitag   85 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG   85 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEecc
Confidence            46899999999999999988876664 79999976532211 111       111    123466788999999999874


Q ss_pred             CC--h------hhhhcc-------cH---HHHccCCCCCEEEEcCC
Q 026360          102 LT--E------KTRGMF-------DK---DRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       102 ~~--~------~t~~~i-------~~---~~l~~mk~gailIN~sr  129 (240)
                      ..  +      .++.-+       -+   +.+....|++++++++.
T Consensus        86 ~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsN  131 (154)
T d1pzga1          86 LTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTN  131 (154)
T ss_dssp             CSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             cccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            21  1      122111       11   22344568899999874

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.74  E-value=0.00017  Score=55.26  Aligned_cols=96  Identities=13%  Similarity=0.206  Sum_probs=69.2

Q ss_pred             ccCCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCCh--hH---HHh----c--CceecCCHHhhcCcCCEEEEcC
Q 026360           33 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDP--QL---EKE----T--GAKFEEDLDTMLPKCDIVVVNT  100 (240)
Q Consensus        33 ~l~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~--~~---~~~----~--g~~~~~~l~ell~~aDiVvl~l  100 (240)
                      .|.|++|++|| ..++.++++..+..||+++.++.|..-.+  +.   ...    .  .+....++++.++.+|+|....
T Consensus         1 sl~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~   80 (163)
T d1pvva2           1 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV   80 (163)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecc
Confidence            37899999999 45788999999999999999998753221  11   111    1  1345679999999999998754


Q ss_pred             CCC-------hh-----hhhcccHHHHccCCCCCEEEEcC
Q 026360          101 PLT-------EK-----TRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       101 p~~-------~~-----t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      =..       +.     ....++.+.++.+|++++|..+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iimHpl  120 (163)
T d1pvva2          81 WASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL  120 (163)
T ss_dssp             CCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred             eeecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEecCC
Confidence            111       11     12356888999999999998764

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.72  E-value=9.6e-05  Score=56.05  Aligned_cols=95  Identities=23%  Similarity=0.277  Sum_probs=66.6

Q ss_pred             cCCCeEEEEc---cChHHHHHHHHhccCCCEEEEEcCCCC---ChhHHHhc--CceecCCHHhhcCcCCEEEEcCCCCh-
Q 026360           34 LEGKTVGTVG---CGRIGKLLLQRLKPFNCNLLYHDRVKM---DPQLEKET--GAKFEEDLDTMLPKCDIVVVNTPLTE-  104 (240)
Q Consensus        34 l~g~~vgIIG---~G~iG~~~A~~l~~~G~~V~~~d~~~~---~~~~~~~~--g~~~~~~l~ell~~aDiVvl~lp~~~-  104 (240)
                      |.|++|++||   .|++.++++..+..+|++++.+.+.+.   ........  .+...+++++.++++|+|...--..+ 
T Consensus         1 l~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~~~q~~~   80 (153)
T d1pg5a2           1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKER   80 (153)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTT
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEeeeeehh
Confidence            5799999999   467999999999999999766554321   12222222  34566799999999999876432111 


Q ss_pred             ----------hhhhcccHHHHccCCCCCEEEEcC
Q 026360          105 ----------KTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       105 ----------~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                                ....-++.+.++.++++++|..+.
T Consensus        81 ~~~~~~~~~~~~~y~v~~~~l~~~~~~~i~mH~L  114 (153)
T d1pg5a2          81 FVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPL  114 (153)
T ss_dssp             SSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCS
T ss_pred             ccchhHHHHHHHhhhhhHHHHhccCCCeEEecCC
Confidence                      012236788888899999887764

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.69  E-value=3.3e-05  Score=58.51  Aligned_cols=95  Identities=14%  Similarity=0.113  Sum_probs=59.1

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCChh-HHHhc---------CceecCCHHhhcCcCCEEEEcCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKET---------GAKFEEDLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~-~~~~~---------g~~~~~~l~ell~~aDiVvl~lp~  102 (240)
                      .++||+|||.|.+|..+|..+...|.  ++..+|..+.... .+.++         ......+-.+.+++||+|+++...
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag~   84 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGA   84 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSC
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEeccc
Confidence            57899999999999999999887665  7999998642211 11111         122222334668899999997643


Q ss_pred             Ch---hh--------hhccc--HHHHccCCCCCEEEEcCC
Q 026360          103 TE---KT--------RGMFD--KDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       103 ~~---~t--------~~~i~--~~~l~~mk~gailIN~sr  129 (240)
                      ..   .+        ..++.  .+.+....|++++++++.
T Consensus        85 ~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtN  124 (148)
T d1ldna1          85 NQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN  124 (148)
T ss_dssp             CCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred             ccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecC
Confidence            21   11        11110  123344568899999863

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.69  E-value=4.3e-05  Score=59.90  Aligned_cols=71  Identities=11%  Similarity=0.078  Sum_probs=49.8

Q ss_pred             ccccCCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-----cCc--e-----ecCCHHhhcCcCCEEE
Q 026360           31 AYDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----TGA--K-----FEEDLDTMLPKCDIVV   97 (240)
Q Consensus        31 ~~~l~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-----~g~--~-----~~~~l~ell~~aDiVv   97 (240)
                      +.+|+||++.|.| -|.||+.+|+.|...|++|++.+|+....+...+     ...  .     ..+++++++.+.|+|+
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDili   97 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVF   97 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEE
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCeee
Confidence            4589999999999 6999999999999999999999997533222111     111  1     1123445667777776


Q ss_pred             EcCC
Q 026360           98 VNTP  101 (240)
Q Consensus        98 l~lp  101 (240)
                      .+.+
T Consensus        98 n~Ag  101 (191)
T d1luaa1          98 TAGA  101 (191)
T ss_dssp             ECCC
T ss_pred             ecCc
Confidence            6654

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.68  E-value=1.5e-05  Score=60.77  Aligned_cols=89  Identities=22%  Similarity=0.251  Sum_probs=66.5

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-----CCH----HhhcCcCCEEEEcCCCChh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDL----DTMLPKCDIVVVNTPLTEK  105 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l----~ell~~aDiVvl~lp~~~~  105 (240)
                      .|.+|.|.|.|.+|...++.++..|.+|++.++++.+.+.++++|+..+     .+.    .+.....|.++.+.+. +.
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~  105 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVS-KP  105 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCC-HH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecCC-HH
Confidence            5889999999999999999999999999999987767777788886432     122    2334556667776652 22


Q ss_pred             hhhcccHHHHccCCCCCEEEEcC
Q 026360          106 TRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      +    -...+..++++..++.++
T Consensus       106 ~----~~~a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2         106 A----FQSAYNSIRRGGACVLVG  124 (168)
T ss_dssp             H----HHHHHHHEEEEEEEEECC
T ss_pred             H----HHHHHHHhccCCceEecc
Confidence            2    235677789999998886

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.66  E-value=4.9e-05  Score=57.44  Aligned_cols=92  Identities=15%  Similarity=0.265  Sum_probs=57.1

Q ss_pred             CeEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCChh-----HHHh---cCc--e-ecCCHHhhcCcCCEEEEcCCCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-----LEKE---TGA--K-FEEDLDTMLPKCDIVVVNTPLT  103 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~-----~~~~---~g~--~-~~~~l~ell~~aDiVvl~lp~~  103 (240)
                      |||+|||.|.+|..+|..+...|.  ++..+|.+....+     ....   .+.  . ...+. +.+++||+|+++....
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~-~~l~~adiVVitaG~~   80 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGNI   80 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSCG
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCH-HHhccccEEEEecccc
Confidence            799999999999999998876664  7999998643211     1111   111  1 12233 5579999999986532


Q ss_pred             h-------hhh--------hccc--HHHHccCCCCCEEEEcCC
Q 026360          104 E-------KTR--------GMFD--KDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       104 ~-------~t~--------~~i~--~~~l~~mk~gailIN~sr  129 (240)
                      .       .++        .++.  .+.+....|++++++++.
T Consensus        81 ~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN  123 (146)
T d1hyha1          81 KLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISN  123 (146)
T ss_dssp             GGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             ccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecC
Confidence            1       011        1111  123345578999999974

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.65  E-value=7.2e-05  Score=53.86  Aligned_cols=40  Identities=20%  Similarity=0.300  Sum_probs=35.3

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCCh
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP   72 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~   72 (240)
                      ...+.||||+|-|..|+.+|..++.+|++++++|+++..+
T Consensus         8 ~~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~P   47 (111)
T d1kjqa2           8 RPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAP   47 (111)
T ss_dssp             STTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCG
T ss_pred             CCCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCCc
Confidence            3457799999999999999999999999999999876543

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.65  E-value=2.1e-05  Score=61.08  Aligned_cols=71  Identities=21%  Similarity=0.241  Sum_probs=52.7

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH-hc----Cc-----eecCCHHhhcCcCCEEEEcCC
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK-ET----GA-----KFEEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~-~~----g~-----~~~~~l~ell~~aDiVvl~lp  101 (240)
                      .+++||++.|+|.|..+++++..|...| +|++++|+..+.+... .+    ..     ....+++..+..+|+++.++|
T Consensus        14 ~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp   92 (177)
T d1nvta1          14 GRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATP   92 (177)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSC
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCc
Confidence            3689999999999999999999998887 8999999754332211 11    10     122356667788999999998


Q ss_pred             CC
Q 026360          102 LT  103 (240)
Q Consensus       102 ~~  103 (240)
                      ..
T Consensus        93 ~g   94 (177)
T d1nvta1          93 IG   94 (177)
T ss_dssp             TT
T ss_pred             cc
Confidence            54

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.63  E-value=3e-05  Score=59.91  Aligned_cols=89  Identities=12%  Similarity=0.152  Sum_probs=65.2

Q ss_pred             CCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-----CCHHhhc------CcCCEEEEcCCC
Q 026360           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML------PKCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell------~~aDiVvl~lp~  102 (240)
                      .|.+|.|.| .|.+|...++.++.+|++|++.++++.+.+.+++.|+..+     .++.+-+      ...|+++.++..
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~g~  104 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAG  104 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCCT
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccccCCccCHHHHHHHHhCCCCEEEEEecccc
Confidence            488999988 5999999999999999999988876555667777775422     2333322      347888888761


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEEcCC
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN~sr  129 (240)
                       +     ...+.++.+++++.+|+++.
T Consensus       105 -~-----~~~~~~~~l~~~G~~v~~G~  125 (183)
T d1pqwa_         105 -E-----AIQRGVQILAPGGRFIELGK  125 (183)
T ss_dssp             -H-----HHHHHHHTEEEEEEEEECSC
T ss_pred             -h-----HHHHHHHHhcCCCEEEEEcc
Confidence             1     12356778899999999863

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=3.8e-05  Score=59.16  Aligned_cols=89  Identities=13%  Similarity=0.159  Sum_probs=64.2

Q ss_pred             CCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-----CCHHhhc------CcCCEEEEcCCC
Q 026360           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML------PKCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell------~~aDiVvl~lp~  102 (240)
                      .|.+|.|.|. |.+|....+.++.+|++|++.++++.+.+.++++|+..+     .++.+.+      ...|+|+-++. 
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~~g-  106 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLA-  106 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCH-
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEeeccc-
Confidence            5889999995 999999999999999999999876655667777887422     2332222      23677777664 


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEEcCC
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN~sr  129 (240)
                       ..    .....++.++++..+|.++.
T Consensus       107 -~~----~~~~~~~~l~~~G~iv~~G~  128 (174)
T d1yb5a2         107 -NV----NLSKDLSLLSHGGRVIVVGS  128 (174)
T ss_dssp             -HH----HHHHHHHHEEEEEEEEECCC
T ss_pred             -HH----HHHHHHhccCCCCEEEEEec
Confidence             11    12456778899999998863

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.58  E-value=1.5e-05  Score=61.66  Aligned_cols=89  Identities=18%  Similarity=0.140  Sum_probs=64.4

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCCCChhHHHhcCceec-----CCHHhhcC-----cCCEEEEcCCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFE-----EDLDTMLP-----KCDIVVVNTPLT  103 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell~-----~aDiVvl~lp~~  103 (240)
                      .|.+|.|+|.|.+|...++.++.+|.+ |++.|+++.+.+.++++|+..+     .+..+.+.     ..|+|+-|+...
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G~~  107 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSP  107 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCH
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCCcH
Confidence            588999999999999999999999986 5566777666677788886322     23333221     279999888622


Q ss_pred             hhhhhcccHHHHccCCCCCEEEEcC
Q 026360          104 EKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       104 ~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                       ++    .+..++.++++..++.++
T Consensus       108 -~~----~~~~~~~~~~~G~i~~~G  127 (174)
T d1f8fa2         108 -EI----LKQGVDALGILGKIAVVG  127 (174)
T ss_dssp             -HH----HHHHHHTEEEEEEEEECC
T ss_pred             -HH----HHHHHhcccCceEEEEEe
Confidence             21    235577789999988886

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=97.58  E-value=0.00015  Score=55.34  Aligned_cols=90  Identities=13%  Similarity=0.237  Sum_probs=59.2

Q ss_pred             CeEEEEccChHHHH-HHHHhccCC-CEEEE-EcCCCCCh--hHHHhcCceec-CCHHhhc-----CcCCEEEEcCCCChh
Q 026360           37 KTVGTVGCGRIGKL-LLQRLKPFN-CNLLY-HDRVKMDP--QLEKETGAKFE-EDLDTML-----PKCDIVVVNTPLTEK  105 (240)
Q Consensus        37 ~~vgIIG~G~iG~~-~A~~l~~~G-~~V~~-~d~~~~~~--~~~~~~g~~~~-~~l~ell-----~~aDiVvl~lp~~~~  105 (240)
                      .++||||.|.||+. +.+.++.+. .++.+ .++++...  ..++..|+... .++++++     .+.|+|+.++|....
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~h   84 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAH   84 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHHH
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchhH
Confidence            58999999999986 567777653 45554 46665433  34566776533 3345443     468999999983322


Q ss_pred             hhhcccHHHHccCCCCCEEEEcCC
Q 026360          106 TRGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailIN~sr  129 (240)
                      ..   ....++..+.|..+||-+.
T Consensus        85 ~~---~~~~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          85 VQ---NEALLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             HH---HHHHHHHHCTTCEEEECST
T ss_pred             HH---hHHHHHHHHcCCEEEEccc
Confidence            22   2234556799999999874

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=97.57  E-value=4.5e-05  Score=65.48  Aligned_cols=91  Identities=10%  Similarity=0.183  Sum_probs=67.2

Q ss_pred             CCCeEEEEccChHHHHHHHHhc-cCCC-EEEEEcCCCCChhHH-Hh----cCc--eecCCHHhhcCcCCEEEEcCCCChh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLK-PFNC-NLLYHDRVKMDPQLE-KE----TGA--KFEEDLDTMLPKCDIVVVNTPLTEK  105 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~-~~G~-~V~~~d~~~~~~~~~-~~----~g~--~~~~~l~ell~~aDiVvl~lp~~~~  105 (240)
                      .-++++|||.|..+...++.+. -++. +|.+|++++...+.+ ..    .|+  ..+++++++++.||+|+.+++ ++.
T Consensus       127 da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Ta-s~s  205 (340)
T d1x7da_         127 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTA-DKA  205 (340)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCC-CSS
T ss_pred             CCceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccc-cCC
Confidence            3579999999999999888765 4555 599999976443322 21    244  457899999999999999886 334


Q ss_pred             hhhcccHHHHccCCCCCEEEEcCC
Q 026360          106 TRGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailIN~sr  129 (240)
                      +..++..+   .+|||+.+..+|.
T Consensus       206 ~~Pv~~~~---~l~pG~hI~aiGs  226 (340)
T d1x7da_         206 YATIITPD---MLEPGMHLNAVGG  226 (340)
T ss_dssp             EEEEECGG---GCCTTCEEEECSC
T ss_pred             CCcccchh---hcCCCCEEeeccc
Confidence            45666654   5799999988875

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.57  E-value=0.00014  Score=56.20  Aligned_cols=89  Identities=16%  Similarity=0.053  Sum_probs=65.7

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceecCC-------HHhhc-----CcCCEEEEcCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEED-------LDTML-----PKCDIVVVNTP  101 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~~-------l~ell-----~~aDiVvl~lp  101 (240)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.|+++.+.+.++++|...+.+       .+...     ...|+++-++.
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~G  107 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG  107 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEecc
Confidence            58899999999999999999999998 5888898887788888888643211       12122     45799999987


Q ss_pred             CChhhhhcccHHHHccCCCC-CEEEEcC
Q 026360          102 LTEKTRGMFDKDRIAKMKKG-VLIVNNA  128 (240)
Q Consensus       102 ~~~~t~~~i~~~~l~~mk~g-ailIN~s  128 (240)
                      .. .+    ..+.+..++++ ..++-++
T Consensus       108 ~~-~~----~~~a~~~~~~g~G~~v~vG  130 (174)
T d1e3ia2         108 TA-QT----LKAAVDCTVLGWGSCTVVG  130 (174)
T ss_dssp             CH-HH----HHHHHHTBCTTTCEEEECC
T ss_pred             cc-hH----HHHHHHHhhcCCeEEEecC
Confidence            32 21    23566778885 6777776

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=97.57  E-value=0.0001  Score=55.18  Aligned_cols=93  Identities=25%  Similarity=0.317  Sum_probs=58.5

Q ss_pred             CeEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCChhHH-Hh---------cCce-ecCCHHhhcCcCCEEEEcC--C
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLE-KE---------TGAK-FEEDLDTMLPKCDIVVVNT--P  101 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~~~-~~---------~g~~-~~~~l~ell~~aDiVvl~l--p  101 (240)
                      +||+|||.|.+|..+|..+...|.  ++..+|.++...... ..         ...+ ...+..+.+++||+|+++.  |
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag~~   80 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLP   80 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEecC
Confidence            589999999999999999987764  799999876432211 11         0111 1124456789999999986  3


Q ss_pred             CChh-hh--------hccc--HHHHccCCCCCEEEEcCC
Q 026360          102 LTEK-TR--------GMFD--KDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       102 ~~~~-t~--------~~i~--~~~l~~mk~gailIN~sr  129 (240)
                      ..+. ++        .++.  .+.+....|++++++++.
T Consensus        81 ~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN  119 (142)
T d1guza1          81 RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN  119 (142)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecC
Confidence            2221 11        1110  123334458899999875

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.55  E-value=7.1e-05  Score=56.50  Aligned_cols=94  Identities=15%  Similarity=0.180  Sum_probs=58.4

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCC--CEEEEEcCCCCChh-HHHh-------cC--ceecCCHHhhcCcCCEEEEcCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQ-LEKE-------TG--AKFEEDLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G--~~V~~~d~~~~~~~-~~~~-------~g--~~~~~~l~ell~~aDiVvl~lp~  102 (240)
                      ..+||+|||.|.+|..+|..|...|  -++..+|+.+...+ .+.+       .+  .....+.++ +++||+|+++...
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~~-~~~adivvitag~   82 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSD-CKDADLVVITAGA   82 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGG-GTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHHH-hccccEEEEeccc
Confidence            4679999999999999999988766  48999998642211 1100       11  112335554 6899999998642


Q ss_pred             Chh---h--------hhccc--HHHHccCCCCCEEEEcCC
Q 026360          103 TEK---T--------RGMFD--KDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       103 ~~~---t--------~~~i~--~~~l~~mk~gailIN~sr  129 (240)
                      ...   +        ..++.  .+.+..-.|.+++++++.
T Consensus        83 ~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtN  122 (146)
T d1ez4a1          83 PQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN  122 (146)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCC
Confidence            211   1        11111  123445678899999874

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=4.2e-05  Score=60.22  Aligned_cols=68  Identities=19%  Similarity=0.143  Sum_probs=50.6

Q ss_pred             CCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCcee-------cCCHHhhcCcCCEEEEcCCC
Q 026360           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF-------EEDLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~-------~~~l~ell~~aDiVvl~lp~  102 (240)
                      ..|||.|+| .|.+|+.+++.|...|++|.+++|++.+.......+++.       .++++++++.+|+|+.++..
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~   77 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT   77 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEecc
Confidence            468999999 699999999999999999999998754332222223321       23556789999999988753

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.53  E-value=0.00034  Score=58.52  Aligned_cols=108  Identities=20%  Similarity=0.308  Sum_probs=72.9

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCC--------CCChhHHHh----cCc------eecCCHHhhc-Cc
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV--------KMDPQLEKE----TGA------KFEEDLDTML-PK   92 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~--------~~~~~~~~~----~g~------~~~~~l~ell-~~   92 (240)
                      .+|.|++|.|-|+|++|..+|+.|...|++|++++.+        ..+.+...+    .+.      ... +.++++ ..
T Consensus        32 ~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~-~~~~~~~~~  110 (293)
T d1hwxa1          32 PGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKI-YEGSILEVD  110 (293)
T ss_dssp             SSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCB-CCSCGGGCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeeccccccc-CCcccccCC
Confidence            4699999999999999999999999999998876532        112222211    110      111 223344 47


Q ss_pred             CCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus        93 aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      ||+++-|.     +.+.|+.+....++- .+|+-.+.|++ +.++ .+.|.+..|.
T Consensus       111 ~DIliPaA-----~~~~I~~~~a~~l~a-k~I~EgAN~P~-t~eA-~~~L~~~gI~  158 (293)
T d1hwxa1         111 CDILIPAA-----SEKQLTKSNAPRVKA-KIIAEGANGPT-TPQA-DKIFLERNIM  158 (293)
T ss_dssp             CSEEEECS-----SSSCBCTTTGGGCCC-SEEECCSSSCB-CHHH-HHHHHHTTCE
T ss_pred             ccEEeecc-----ccccccHHHHHHHhh-CEEeccCCCCC-Ccch-HHHHHHCCCE
Confidence            99999886     367788887777764 46777777774 5555 3667776665

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.53  E-value=3e-05  Score=59.80  Aligned_cols=87  Identities=15%  Similarity=0.159  Sum_probs=66.0

Q ss_pred             CCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHh------hcCcCCEEEEcCCCChhhh
Q 026360           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDT------MLPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        35 ~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e------ll~~aDiVvl~lp~~~~t~  107 (240)
                      .|++|.|.|. |.+|...++.++..|++|++.++++...+.++++|+..+-+..+      ....+|+|+-+..  +.  
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G--~~--  102 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRG--KE--  102 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSC--TT--
T ss_pred             CCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhccccccccccccc--hh--
Confidence            5889999995 99999999999999999999988776777788888753322222      2355898888764  11  


Q ss_pred             hcccHHHHccCCCCCEEEEcC
Q 026360          108 GMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~s  128 (240)
                        + .+.++.++++..+|.+|
T Consensus       103 --~-~~~~~~l~~~G~~v~~G  120 (171)
T d1iz0a2         103 --V-EESLGLLAHGGRLVYIG  120 (171)
T ss_dssp             --H-HHHHTTEEEEEEEEEC-
T ss_pred             --H-HHHHHHHhcCCcEEEEe
Confidence              2 46678899999999886

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=97.52  E-value=0.00017  Score=54.04  Aligned_cols=93  Identities=18%  Similarity=0.200  Sum_probs=55.4

Q ss_pred             CeEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCCh-hHHHhc-C-------ceecCCHHhhcCcCCEEEEcCCCChh
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDP-QLEKET-G-------AKFEEDLDTMLPKCDIVVVNTPLTEK  105 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~-~~~~~~-g-------~~~~~~l~ell~~aDiVvl~lp~~~~  105 (240)
                      +||+|||.|.+|..+|..+...+.  ++..+|..+... ..+.++ .       ........+.+++||+|+++......
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~   81 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANRK   81 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC---
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecccccC
Confidence            489999999999999998877665  799999765332 122211 1       11122234568899999998542221


Q ss_pred             ---hh--------hccc--HHHHccCCCCCEEEEcCC
Q 026360          106 ---TR--------GMFD--KDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       106 ---t~--------~~i~--~~~l~~mk~gailIN~sr  129 (240)
                         ++        .++.  .+.+....|++++++++.
T Consensus        82 ~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtN  118 (142)
T d1y6ja1          82 PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSN  118 (142)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSS
T ss_pred             cCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecC
Confidence               11        1110  122444568899999875

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=97.50  E-value=8.2e-05  Score=56.81  Aligned_cols=108  Identities=12%  Similarity=0.136  Sum_probs=65.0

Q ss_pred             CeEEEEccChHHHH-HHHHhccC-CCEEEEEcCCCCChhH-HHhcCce-ecCCHHhhcC-cCCEEEEcCCCChhhhhccc
Q 026360           37 KTVGTVGCGRIGKL-LLQRLKPF-NCNLLYHDRVKMDPQL-EKETGAK-FEEDLDTMLP-KCDIVVVNTPLTEKTRGMFD  111 (240)
Q Consensus        37 ~~vgIIG~G~iG~~-~A~~l~~~-G~~V~~~d~~~~~~~~-~~~~g~~-~~~~l~ell~-~aDiVvl~lp~~~~t~~~i~  111 (240)
                      .+|||||+|.+|+. ....++.. +.++.++|+++..... ....+.. ...+.+++++ +.|+|++++|..  +..-+-
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~--~H~~~~   79 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATD--VHSTLA   79 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGG--GHHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceeccccccc--cccccc
Confidence            48999999999976 56777665 5678888876543333 3345543 4567888875 579999999943  322222


Q ss_pred             HHHHccCCCCCEEEEcC-CCcccCHHHHHHHHHhCCcc
Q 026360          112 KDRIAKMKKGVLIVNNA-RGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       112 ~~~l~~mk~gailIN~s-rg~~vd~~aL~~aL~~g~i~  148 (240)
                      ...++.=+  .+++.-= --.+-+...|.++.++.+..
T Consensus        80 ~~al~~gk--~V~~EKP~~~~~~e~~~l~~~a~~~~~~  115 (167)
T d1xeaa1          80 AFFLHLGI--PTFVDKPLAASAQECENLYELAEKHHQP  115 (167)
T ss_dssp             HHHHHTTC--CEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             cccccccc--ccccCCCCcCCHHHHHHHHHHHHHcCCE
Confidence            33333222  2444321 12234456677777665544

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.49  E-value=0.0002  Score=55.33  Aligned_cols=89  Identities=16%  Similarity=0.044  Sum_probs=64.4

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceec------CC-HHhh-----cCcCCEEEEcCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE------ED-LDTM-----LPKCDIVVVNTP  101 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~------~~-l~el-----l~~aDiVvl~lp  101 (240)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.|+++.+.+.++++|+..+      ++ .+++     -...|+++.++.
T Consensus        29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~~g  108 (176)
T d1d1ta2          29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIG  108 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEECSC
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEeCC
Confidence            58899999999999999999999995 79999998888888999887532      11 1211     145899988886


Q ss_pred             CChhhhhcccHHHHccC-CCCCEEEEcC
Q 026360          102 LTEKTRGMFDKDRIAKM-KKGVLIVNNA  128 (240)
Q Consensus       102 ~~~~t~~~i~~~~l~~m-k~gailIN~s  128 (240)
                      ..+..     .+.+..+ +++..+|.++
T Consensus       109 ~~~~~-----~~a~~~~~~~~G~~v~vG  131 (176)
T d1d1ta2         109 HLETM-----IDALASCHMNYGTSVVVG  131 (176)
T ss_dssp             CHHHH-----HHHHTTSCTTTCEEEECS
T ss_pred             chHHH-----HHHHHHhhcCCeEEEEEE
Confidence            32221     2333445 4447888886

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.48  E-value=0.00031  Score=57.14  Aligned_cols=107  Identities=20%  Similarity=0.279  Sum_probs=71.8

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhc-cCCCEEEEEcCCCC--------ChhHH----Hh-------cCceecCCHHhhc-C
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLK-PFNCNLLYHDRVKM--------DPQLE----KE-------TGAKFEEDLDTML-P   91 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~-~~G~~V~~~d~~~~--------~~~~~----~~-------~g~~~~~~l~ell-~   91 (240)
                      .|.|++|.|-|+|++|..+|+.|. ..|++|++.+.+..        ..+..    ..       .+.... +.++++ .
T Consensus        29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~~-~~~~i~~~  107 (239)
T d1gtma1          29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNI-TNEELLEL  107 (239)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEEE-CHHHHHHS
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCeee-cccccccc
Confidence            489999999999999999999885 67999876643221        11111    11       123333 445544 5


Q ss_pred             cCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus        92 ~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      +||+++-|.-     .+.|+.+....++- .+++-.+-+++ ..++ .+.|.++.|.
T Consensus       108 ~~DIl~PcA~-----~~~I~~~~a~~i~a-k~I~e~AN~p~-t~ea-~~~L~~rgI~  156 (239)
T d1gtma1         108 EVDVLAPAAI-----EEVITKKNADNIKA-KIVAEVANGPV-TPEA-DEILFEKGIL  156 (239)
T ss_dssp             CCSEEEECSC-----SCCBCTTGGGGCCC-SEEECCSSSCB-CHHH-HHHHHHTTCE
T ss_pred             cccEEeeccc-----cccccHHHHHhccc-cEEEecCCCCC-CHHH-HHHHHHCCCE
Confidence            7999998874     57788777777764 46666776765 4555 4667776665

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=97.48  E-value=0.00021  Score=55.07  Aligned_cols=89  Identities=16%  Similarity=0.073  Sum_probs=61.9

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceecCC-------HHhhc-----CcCCEEEEcCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEED-------LDTML-----PKCDIVVVNTP  101 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~~-------l~ell-----~~aDiVvl~lp  101 (240)
                      .|.+|.|+|.|.+|...++.++..|. +|++.|+++.+.+.++++|+..+-+       .++..     ...|+++.++.
T Consensus        27 ~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~~g  106 (174)
T d1p0fa2          27 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAG  106 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEcCC
Confidence            58899999999999999999999997 6999999887888888888753311       22222     24788888876


Q ss_pred             CChhhhhcccHHHHccC-CCCCEEEEcC
Q 026360          102 LTEKTRGMFDKDRIAKM-KKGVLIVNNA  128 (240)
Q Consensus       102 ~~~~t~~~i~~~~l~~m-k~gailIN~s  128 (240)
                      ..+.    +. +.+..+ +++..++-++
T Consensus       107 ~~~~----~~-~~~~~~~~~~G~~v~vG  129 (174)
T d1p0fa2         107 RIET----MM-NALQSTYCGSGVTVVLG  129 (174)
T ss_dssp             CHHH----HH-HHHHTBCTTTCEEEECC
T ss_pred             CchH----HH-HHHHHHHHhcCceEEEE
Confidence            3222    22 233334 4445666554

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.48  E-value=8.4e-05  Score=55.62  Aligned_cols=93  Identities=16%  Similarity=0.184  Sum_probs=56.9

Q ss_pred             CeEEEEccChHHHHHHHHhccCC--CEEEEEcCCCCChh-HHHh------c--CceecCCHHhhcCcCCEEEEcCCC--C
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVKMDPQ-LEKE------T--GAKFEEDLDTMLPKCDIVVVNTPL--T  103 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G--~~V~~~d~~~~~~~-~~~~------~--g~~~~~~l~ell~~aDiVvl~lp~--~  103 (240)
                      +||+|||.|.+|..+|..+...+  -++..+|.++.... .+.+      .  ......+..+.+++||+|+++...  .
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~   80 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVPQK   80 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEecccccC
Confidence            58999999999999998776544  58999997642211 1111      0  111122334568999999998632  1


Q ss_pred             h-h--------hhhccc--HHHHccCCCCCEEEEcCC
Q 026360          104 E-K--------TRGMFD--KDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       104 ~-~--------t~~~i~--~~~l~~mk~gailIN~sr  129 (240)
                      + .        +..++.  .+.+....|++++++++.
T Consensus        81 ~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtN  117 (140)
T d1a5za1          81 PGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTN  117 (140)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCC
Confidence            1 1        111111  123445578999999873

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.47  E-value=0.00029  Score=50.89  Aligned_cols=100  Identities=12%  Similarity=0.190  Sum_probs=72.3

Q ss_pred             CeEEEEcc----ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccH
Q 026360           37 KTVGTVGC----GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDK  112 (240)
Q Consensus        37 ~~vgIIG~----G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~  112 (240)
                      |+|+|||.    |..|..+.+.|+..|++|+.++++...     -.|...+.+++++-..-|++++++|. +.+..++. 
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~-----i~G~~~y~sl~~lp~~~D~vvi~vp~-~~~~~~l~-   74 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDE-----IEGLKCYRSVRELPKDVDVIVFVVPP-KVGLQVAK-   74 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE-----ETTEECBSSGGGSCTTCCEEEECSCH-HHHHHHHH-
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEcccccc-----ccCccccccchhccccceEEEEEeCH-HHHHHHHH-
Confidence            68999994    789999999999999999999875422     24677778999988889999999992 23333433 


Q ss_pred             HHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360          113 DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       113 ~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      +.. .+....+++..+   . ..+++.+.+++..+.
T Consensus        75 ~~~-~~g~k~v~~~~g---~-~~~~~~~~a~~~gi~  105 (116)
T d1y81a1          75 EAV-EAGFKKLWFQPG---A-ESEEIRRFLEKAGVE  105 (116)
T ss_dssp             HHH-HTTCCEEEECTT---S-CCHHHHHHHHHHTCE
T ss_pred             HHH-hcCCceEEeccc---h-hhHHHHHHHHHcCCE
Confidence            333 345557777644   2 345677888777665

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.47  E-value=3.5e-05  Score=58.80  Aligned_cols=34  Identities=26%  Similarity=0.394  Sum_probs=31.5

Q ss_pred             CeEEEE-ccChHHHHHHHHhccCCCEEEEEcCCCC
Q 026360           37 KTVGTV-GCGRIGKLLLQRLKPFNCNLLYHDRVKM   70 (240)
Q Consensus        37 ~~vgII-G~G~iG~~~A~~l~~~G~~V~~~d~~~~   70 (240)
                      +||+|+ |.|.||+.+|+.|...|++|.+++|++.
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e   35 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREE   35 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            689999 7999999999999999999999999754

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.46  E-value=0.00063  Score=51.60  Aligned_cols=95  Identities=16%  Similarity=0.201  Sum_probs=64.9

Q ss_pred             cCCCeEEEEc-c-ChHHHHHHHHhccCCCEEEEEcCCCC-C-hh-------HHHhcC--ceecCCHHhhcCcCCEEEEcC
Q 026360           34 LEGKTVGTVG-C-GRIGKLLLQRLKPFNCNLLYHDRVKM-D-PQ-------LEKETG--AKFEEDLDTMLPKCDIVVVNT  100 (240)
Q Consensus        34 l~g~~vgIIG-~-G~iG~~~A~~l~~~G~~V~~~d~~~~-~-~~-------~~~~~g--~~~~~~l~ell~~aDiVvl~l  100 (240)
                      |+|++|++|| . .++.++++..+..+|+++.+..|..- + ..       .+...+  +...+++++.++.+|+|....
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~   80 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV   80 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccc
Confidence            6799999999 3 68999999999999999999987532 1 11       112222  345679999999999998865


Q ss_pred             CCChh------------h-hhcccHHHHccCCCCCEEEEcC
Q 026360          101 PLTEK------------T-RGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       101 p~~~~------------t-~~~i~~~~l~~mk~gailIN~s  128 (240)
                      -....            . ...........+|++++|..+.
T Consensus        81 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~MH~l  121 (161)
T d1vlva2          81 WASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCL  121 (161)
T ss_dssp             CC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             eeeecccccchhhhccccceeeeehhhhcccCCCeeEecCC
Confidence            32210            1 1122334444578888888765

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.45  E-value=7.1e-05  Score=58.07  Aligned_cols=106  Identities=19%  Similarity=0.393  Sum_probs=65.7

Q ss_pred             CeEEEEccChHHHHHHHHhccC-CCEEE-EEcCCCCChh-HHHhcC----ceecCCHHhhc--CcCCEEEEcCCCChhhh
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLL-YHDRVKMDPQ-LEKETG----AKFEEDLDTML--PKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~-G~~V~-~~d~~~~~~~-~~~~~g----~~~~~~l~ell--~~aDiVvl~lp~~~~t~  107 (240)
                      .++||||+|.+|+..++.++.. +++|+ ++|+++.... .....+    ...++++++++  .+.|+|++++|......
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~~   81 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVE   81 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhcc
Confidence            3799999999999999988865 67776 4577543222 233344    24567999987  45789999999432221


Q ss_pred             hcccHHHHccCCCCCEEEEcCCC---cccCHHHHHHHHHhCCcc
Q 026360          108 GMFDKDRIAKMKKGVLIVNNARG---AIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~srg---~~vd~~aL~~aL~~g~i~  148 (240)
                        +   ....++.|.-++- -..   .+-+.+.|.+..++.++.
T Consensus        82 --~---~~~~l~~g~~v~~-EKP~~~~~~e~~~l~~~~~~~~~~  119 (184)
T d1ydwa1          82 --W---AIKAAEKGKHILL-EKPVAMNVTEFDKIVDACEANGVQ  119 (184)
T ss_dssp             --H---HHHHHTTTCEEEE-CSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred             --h---hhhhhhccceeec-ccccccCHHHHHHHHHHHHhhCCE
Confidence              2   2223444443332 121   233445677777777665

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=97.43  E-value=0.00034  Score=52.24  Aligned_cols=92  Identities=16%  Similarity=0.270  Sum_probs=55.8

Q ss_pred             CeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhH-HHhc---------C--ceecCCHHhhcCcCCEEEEcCCC-
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQL-EKET---------G--AKFEEDLDTMLPKCDIVVVNTPL-  102 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~-~~~~---------g--~~~~~~l~ell~~aDiVvl~lp~-  102 (240)
                      +||+|||.|.+|..+|..+...+. ++..+|..+..... +.++         .  +....+.++ +++||+|+++... 
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~-~~~advvvitag~~   80 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYAD-TANSDVIVVTSGAP   80 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGG-GTTCSEEEECCSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHH-hcCCCEEEEeeecc
Confidence            589999999999999988876554 89999986532211 1111         1  222345554 6899999999842 


Q ss_pred             -Ch-hhh-hcc--c----H---HHHccCCCCCEEEEcCC
Q 026360          103 -TE-KTR-GMF--D----K---DRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       103 -~~-~t~-~~i--~----~---~~l~~mk~gailIN~sr  129 (240)
                       .+ .++ .++  +    +   +.+....|+++++.++.
T Consensus        81 ~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtN  119 (142)
T d1uxja1          81 RKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN  119 (142)
T ss_dssp             ---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSS
T ss_pred             CCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCC
Confidence             21 111 111  1    1   22344467889998763

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.42  E-value=7.8e-05  Score=55.33  Aligned_cols=89  Identities=19%  Similarity=0.189  Sum_probs=64.1

Q ss_pred             ccCCCeEEEEcc----------ChHHHHHHHHhccCCCEEEEEcCCCC-------ChhHHH----hcCceecCCHHhhcC
Q 026360           33 DLEGKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKM-------DPQLEK----ETGAKFEEDLDTMLP   91 (240)
Q Consensus        33 ~l~g~~vgIIG~----------G~iG~~~A~~l~~~G~~V~~~d~~~~-------~~~~~~----~~g~~~~~~l~ell~   91 (240)
                      .+.+++|||+|+          +.-...+++.|...|++|.+|||.-.       ..+...    ..+...+++++++++
T Consensus        10 ~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~   89 (136)
T d1mv8a3          10 SHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVA   89 (136)
T ss_dssp             TSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHH
T ss_pred             hcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhh
Confidence            467899999995          56788899999999999999997310       111111    112334679999999


Q ss_pred             cCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEc
Q 026360           92 KCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNN  127 (240)
Q Consensus        92 ~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~  127 (240)
                      .+|+|+++++.. +.     .+....++++.+|+|+
T Consensus        90 ~~D~ivi~t~h~-~f-----~~l~~~~~~~~~I~D~  119 (136)
T d1mv8a3          90 SSDVLVLGNGDE-LF-----VDLVNKTPSGKKLVDL  119 (136)
T ss_dssp             HCSEEEECSCCG-GG-----HHHHHSCCTTCEEEES
T ss_pred             hceEEEEEeCCH-HH-----HHHHHHhcCCCEEEEC
Confidence            999999999843 22     2345567788889987

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.41  E-value=0.00012  Score=62.04  Aligned_cols=89  Identities=18%  Similarity=0.333  Sum_probs=65.7

Q ss_pred             CCCeEEEEccChHHHHHHHHhcc-CCC-EEEEEcCCCCChhH----HHhcCceecCCHHhhcCcCCEEEEcCCCChhhhh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKP-FNC-NLLYHDRVKMDPQL----EKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~-~G~-~V~~~d~~~~~~~~----~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~  108 (240)
                      .-+++||||.|..++..++.+.. +.. +|.+|+|++...+.    ....+.....+.++.+..||+|+.++|.   +..
T Consensus       124 ~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s---~~P  200 (320)
T d1omoa_         124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPS---RKP  200 (320)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCC---SSC
T ss_pred             CccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccC---ccc
Confidence            35789999999999999988764 454 69999987644332    2234454445677888999999999874   345


Q ss_pred             cccHHHHccCCCCCEEEEcCC
Q 026360          109 MFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       109 ~i~~~~l~~mk~gailIN~sr  129 (240)
                      ++..+   .++||+.+..+|.
T Consensus       201 ~~~~~---~l~~G~hv~~iGs  218 (320)
T d1omoa_         201 VVKAE---WVEEGTHINAIGA  218 (320)
T ss_dssp             CBCGG---GCCTTCEEEECSC
T ss_pred             ccchh---hcCCCCeEeecCC
Confidence            66544   4799999999874

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.00071  Score=51.72  Aligned_cols=96  Identities=15%  Similarity=0.147  Sum_probs=69.3

Q ss_pred             ccCCCeEEEEccC-hHHHHHHHHhccCCCEEEEEcCCCCCh--h-------HHHhcC--ceecCCHHhhcCcCCEEEEcC
Q 026360           33 DLEGKTVGTVGCG-RIGKLLLQRLKPFNCNLLYHDRVKMDP--Q-------LEKETG--AKFEEDLDTMLPKCDIVVVNT  100 (240)
Q Consensus        33 ~l~g~~vgIIG~G-~iG~~~A~~l~~~G~~V~~~d~~~~~~--~-------~~~~~g--~~~~~~l~ell~~aDiVvl~l  100 (240)
                      .|.|++|++||=| ++.++++..+..+|+++.++.+....+  +       .....|  +...+++++.+..+|+|....
T Consensus         1 sl~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi~~~~   80 (170)
T d1otha2           1 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDT   80 (170)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHHhhhhheeeec
Confidence            3789999999954 677888899999999999998753221  1       111223  345679999999999998876


Q ss_pred             CCChh------------hhhcccHHHHccCCCCCEEEEcC
Q 026360          101 PLTEK------------TRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       101 p~~~~------------t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      .....            ....++.+.++.++++++|..+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~MHpl  120 (170)
T d1otha2          81 WISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCL  120 (170)
T ss_dssp             SSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             eecccchhhhHHHHHHHhhhhhhhhhhhccCCceEEecCC
Confidence            43221            12336778888999999988875

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=7.9e-05  Score=50.22  Aligned_cols=34  Identities=24%  Similarity=0.316  Sum_probs=31.9

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM   70 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~   70 (240)
                      |+|||+|-|..|+.++...+.+|+++.++|+.+.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            6899999999999999999999999999998653

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.38  E-value=0.00028  Score=53.35  Aligned_cols=95  Identities=20%  Similarity=0.234  Sum_probs=58.3

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChh-HHHh-------cCce---ecCCHHhhcCcCCEEEEcCCCC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-LEKE-------TGAK---FEEDLDTMLPKCDIVVVNTPLT  103 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~-~~~~-------~g~~---~~~~l~ell~~aDiVvl~lp~~  103 (240)
                      ..||+|||.|.+|..+|..+...+. ++..||..+...+ .+.+       .+..   ...+..+.+++||+|+++....
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~~   82 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFT   82 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecccc
Confidence            4689999999999999988876554 6999998653321 1111       1111   1123446678999999987432


Q ss_pred             hh--------hhhc-c--c----HHH---HccCCCCCEEEEcCCC
Q 026360          104 EK--------TRGM-F--D----KDR---IAKMKKGVLIVNNARG  130 (240)
Q Consensus       104 ~~--------t~~~-i--~----~~~---l~~mk~gailIN~srg  130 (240)
                      ..        ++.- +  +    ++.   +....|++++++++..
T Consensus        83 ~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNP  127 (150)
T d1t2da1          83 KAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNP  127 (150)
T ss_dssp             SCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred             cCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence            11        0111 1  1    122   3344689999998753

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.31  E-value=0.0001  Score=55.43  Aligned_cols=38  Identities=29%  Similarity=0.428  Sum_probs=35.0

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCC
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV   68 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~   68 (240)
                      ..+|+||++.|||.|.+|..-|+.|...|++|+++++.
T Consensus         8 ~~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1           8 AHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             EECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             heeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35799999999999999999999999999999999764

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.30  E-value=4.1e-05  Score=58.60  Aligned_cols=89  Identities=22%  Similarity=0.200  Sum_probs=63.6

Q ss_pred             CCCeEEEEcc-ChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceec-----CCH-Hhhc-----CcCCEEEEcCC
Q 026360           35 EGKTVGTVGC-GRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDL-DTML-----PKCDIVVVNTP  101 (240)
Q Consensus        35 ~g~~vgIIG~-G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l-~ell-----~~aDiVvl~lp  101 (240)
                      .|.+|.|+|. |.+|...++.++..|. +|++.++++.+.+.++++|+..+     .+. ++..     ...|+++-+..
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~g  106 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNN  106 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCC
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhcccc
Confidence            4789999995 9999999999998885 79999987766777777776321     122 2222     23788888876


Q ss_pred             CChhhhhcccHHHHccCCCCCEEEEcC
Q 026360          102 LTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       102 ~~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      . +.+   + +..+..++++..++.+|
T Consensus       107 ~-~~~---~-~~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2         107 S-EKT---L-SVYPKALAKQGKYVMVG  128 (170)
T ss_dssp             C-HHH---H-TTGGGGEEEEEEEEECC
T ss_pred             c-chH---H-HhhhhhcccCCEEEEec
Confidence            3 222   1 23466789999998886

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.27  E-value=6.1e-05  Score=57.86  Aligned_cols=89  Identities=15%  Similarity=0.172  Sum_probs=64.1

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceec-----CCHHhhc-----CcCCEEEEcCCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLDTML-----PKCDIVVVNTPLT  103 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell-----~~aDiVvl~lp~~  103 (240)
                      .|.+|.|+|.|.+|...++.++.+|. .|++.++++.+.+.+++.|...+     ++.++..     ...|+++.++...
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~~  111 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQ  111 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCCH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecCcc
Confidence            48899999999999999999998886 57788887666677777776422     1222222     2378898888732


Q ss_pred             hhhhhcccHHHHccCCCCCEEEEcC
Q 026360          104 EKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       104 ~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      ..    + ...+..++++..++.++
T Consensus       112 ~~----~-~~a~~~l~~~G~iv~~G  131 (172)
T d1h2ba2         112 AT----V-DYTPYLLGRMGRLIIVG  131 (172)
T ss_dssp             HH----H-HHGGGGEEEEEEEEECC
T ss_pred             hH----H-HHHHHHHhCCCEEEEEe
Confidence            21    1 34567789999999886

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=97.24  E-value=0.00021  Score=55.24  Aligned_cols=66  Identities=23%  Similarity=0.384  Sum_probs=46.4

Q ss_pred             CeEEEEccChHHHH-HHHHhccCC--CEEE-EEcCCCCChhH-HHhcCc-eecCCHHhhcC--cCCEEEEcCCC
Q 026360           37 KTVGTVGCGRIGKL-LLQRLKPFN--CNLL-YHDRVKMDPQL-EKETGA-KFEEDLDTMLP--KCDIVVVNTPL  102 (240)
Q Consensus        37 ~~vgIIG~G~iG~~-~A~~l~~~G--~~V~-~~d~~~~~~~~-~~~~g~-~~~~~l~ell~--~aDiVvl~lp~  102 (240)
                      .++||||+|.+|+. .+..++..+  ++|. ++|+++...+. .+..+. ..+.+++++++  +.|+|++++|.
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~   77 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPV   77 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCG
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeeccccc
Confidence            48999999999987 477777643  4665 56776533332 334454 34579999985  47899999984

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.23  E-value=0.00024  Score=53.23  Aligned_cols=92  Identities=17%  Similarity=0.146  Sum_probs=57.9

Q ss_pred             CeEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCChhH-H------Hh-cC----ceecCCHHhhcCcCCEEEEcCCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQL-E------KE-TG----AKFEEDLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~~-~------~~-~g----~~~~~~l~ell~~aDiVvl~lp~  102 (240)
                      +||+|||.|.+|..+|..+...|.  ++..+|.++..... +      .. .+    +....+. +.+++||+|+++...
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~-~~~~~adiVvitag~   79 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-SLLKGSEIIVVTAGL   79 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG-GGGTTCSEEEECCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCH-HHhccccEEEEeccc
Confidence            589999999999999998876554  69999976422111 1      00 11    1222344 678999999998742


Q ss_pred             --Chh---------hhhccc--HHHHccCCCCCEEEEcCC
Q 026360          103 --TEK---------TRGMFD--KDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       103 --~~~---------t~~~i~--~~~l~~mk~gailIN~sr  129 (240)
                        .+.         +..++.  .+.+....|++++++++.
T Consensus        80 ~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtN  119 (142)
T d1ojua1          80 ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN  119 (142)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred             cCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecC
Confidence              221         111111  123445578899999985

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=97.22  E-value=0.00016  Score=55.37  Aligned_cols=96  Identities=18%  Similarity=0.231  Sum_probs=60.1

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCChh-HHHhc-------Cc---eecCCHHhhcCcCCEEEEc
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKET-------GA---KFEEDLDTMLPKCDIVVVN   99 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~-~~~~~-------g~---~~~~~l~ell~~aDiVvl~   99 (240)
                      .+...||+|||.|.+|..+|..+...|.  ++..+|.++.... .+.++       +.   ....+ .+.+++||+|+++
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d-~~~~~~adiVVit   95 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKD-YSVTANSKIVVVT   95 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSS-GGGGTTCSEEEEC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccc-hhhcccccEEEEe
Confidence            4567899999999999999999988876  7999998642211 11111       11   12233 4568899999998


Q ss_pred             CCCC--h-hhhhcc---c----H---HHHccCCCCCEEEEcCC
Q 026360          100 TPLT--E-KTRGMF---D----K---DRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       100 lp~~--~-~t~~~i---~----~---~~l~~mk~gailIN~sr  129 (240)
                      ....  + +++.-+   |    +   ..+....|++++++++.
T Consensus        96 Ag~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtN  138 (160)
T d1i0za1          96 AGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSN  138 (160)
T ss_dssp             CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             cCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            6322  2 122111   1    1   12333467889999874

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=97.21  E-value=0.0002  Score=54.15  Aligned_cols=63  Identities=17%  Similarity=0.265  Sum_probs=49.4

Q ss_pred             CCCeEEEEc---cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcC
Q 026360           35 EGKTVGTVG---CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT  100 (240)
Q Consensus        35 ~g~~vgIIG---~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~l  100 (240)
                      .|.+|++||   .++++++++..+..+|+++.+..|..-.++   ...+....++++.++++|+|....
T Consensus         2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~~---~~~~~~~~~~~ea~~~aDviy~~r   67 (151)
T d2at2a2           2 KGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDE---ENTFGTYVSMDEAVESSDVVMLLR   67 (151)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhcc---ccceeEEEechhccccCceeeeeE
Confidence            589999999   478999999999999999988887542221   123445568999999999987754

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.19  E-value=0.00029  Score=52.91  Aligned_cols=92  Identities=24%  Similarity=0.264  Sum_probs=58.0

Q ss_pred             CeEEEEcc-ChHHHHHHHHhccCCC--EEEEEcCCCCChhHHHhcC-c---------eecCCHHhhcCcCCEEEEcCC--
Q 026360           37 KTVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETG-A---------KFEEDLDTMLPKCDIVVVNTP--  101 (240)
Q Consensus        37 ~~vgIIG~-G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~g-~---------~~~~~l~ell~~aDiVvl~lp--  101 (240)
                      .||+|||. |.+|..+|..+...|.  ++..+|..+. ...+.++. .         ....+..+.+++||+|+++..  
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~-~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~   79 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT-PGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVP   79 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSH-HHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCC
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEecccc-chhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcC
Confidence            48999995 9999999999987776  5889997542 22222211 1         112455688899999999864  


Q ss_pred             CCh-hhh--------hccc--HHHHccCCCCCEEEEcCC
Q 026360          102 LTE-KTR--------GMFD--KDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       102 ~~~-~t~--------~~i~--~~~l~~mk~gailIN~sr  129 (240)
                      ..+ +++        .++.  .+.+....|+++++.++.
T Consensus        80 ~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtN  118 (144)
T d1mlda1          80 RKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN  118 (144)
T ss_dssp             CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            222 111        1111  112333478899999874

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=97.17  E-value=0.00067  Score=51.14  Aligned_cols=94  Identities=19%  Similarity=0.256  Sum_probs=63.7

Q ss_pred             cCCCeEEEEcc---ChHHHHHHHHhccCCCEEEEEcCCCCChh-----HHHhcC--ceecCCHHhhcCcCCEEEEcCCCC
Q 026360           34 LEGKTVGTVGC---GRIGKLLLQRLKPFNCNLLYHDRVKMDPQ-----LEKETG--AKFEEDLDTMLPKCDIVVVNTPLT  103 (240)
Q Consensus        34 l~g~~vgIIG~---G~iG~~~A~~l~~~G~~V~~~d~~~~~~~-----~~~~~g--~~~~~~l~ell~~aDiVvl~lp~~  103 (240)
                      |.|++|++||=   +++.++++..+..+|+++.++.|......     ...+.+  +....++++.++++|+|....-..
T Consensus         2 l~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~~~~   81 (157)
T d1ml4a2           2 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQK   81 (157)
T ss_dssp             SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCCCG
T ss_pred             cCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeecccc
Confidence            78999999994   89999999999999999999887532211     122222  345679999999999988876432


Q ss_pred             hhh-----------hhcccHHHHccCCCCCEEEEc
Q 026360          104 EKT-----------RGMFDKDRIAKMKKGVLIVNN  127 (240)
Q Consensus       104 ~~t-----------~~~i~~~~l~~mk~gailIN~  127 (240)
                      ...           ...++.+.++.+++++++..+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~mHp  116 (157)
T d1ml4a2          82 ERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHP  116 (157)
T ss_dssp             GGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECC
T ss_pred             ccccchhhHHhhcchhccCHHHHhhcCCCeEEecC
Confidence            210           112344555556666555443

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.16  E-value=0.0012  Score=48.98  Aligned_cols=102  Identities=13%  Similarity=0.107  Sum_probs=71.6

Q ss_pred             CCCeEEEEcc----ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcc
Q 026360           35 EGKTVGTVGC----GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (240)
Q Consensus        35 ~g~~vgIIG~----G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i  110 (240)
                      +-++|+|||.    |..|..+++.|+.+|++|+.+++....     -.|...+.+++++-..-|++++++|. +.+..++
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~-----i~G~~~~~sl~dlp~~iD~v~i~vp~-~~~~~~~   91 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEE-----VLGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYV   91 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE-----ETTEECBSSGGGCSSCCSEEEECSCH-HHHHHHH
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccc-----cCCCcccccccccCccceEEEEEeCH-HHHHHHH
Confidence            4689999995    689999999999999999999875421     23666778999998899999999992 2233333


Q ss_pred             cHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360          111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       111 ~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                       ++.. .+....++++.|   ..++ .+.+.+++.++.
T Consensus        92 -~e~~-~~g~k~v~~~~G---~~~e-e~~~~a~~~gi~  123 (139)
T d2d59a1          92 -EQAI-KKGAKVVWFQYN---TYNR-EASKKADEAGLI  123 (139)
T ss_dssp             -HHHH-HHTCSEEEECTT---CCCH-HHHHHHHHTTCE
T ss_pred             -HHHH-HhCCCEEEEecc---ccCH-HHHHHHHHCCCE
Confidence             3333 245557777665   2344 455556665554

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=97.15  E-value=0.00043  Score=50.36  Aligned_cols=85  Identities=18%  Similarity=0.169  Sum_probs=55.6

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec----CCHHhh----cCcCCEEEEcCCCChhhhh
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLDTM----LPKCDIVVVNTPLTEKTRG  108 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~el----l~~aDiVvl~lp~~~~t~~  108 (240)
                      |.+-|+|+|.+|+.+++.|++.  +|.+.+.++...+.....|+...    .+.+.+    +.+|+.++++.+.+..+  
T Consensus         1 kHivI~G~g~~g~~l~~~L~~~--~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n--   76 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRGS--EVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSET--   76 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCGG--GEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHH--
T ss_pred             CEEEEECCCHHHHHHHHHHcCC--CCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhhh--
Confidence            4688999999999999999754  56777876655555566665432    223222    67899999988854443  


Q ss_pred             cccHHHHccCCCCCEEE
Q 026360          109 MFDKDRIAKMKKGVLIV  125 (240)
Q Consensus       109 ~i~~~~l~~mk~gailI  125 (240)
                      +.-....+.+.|...+|
T Consensus        77 ~~~~~~~r~~~~~~~ii   93 (129)
T d2fy8a1          77 IHCILGIRKIDESVRII   93 (129)
T ss_dssp             HHHHHHHHHHCSSSCEE
T ss_pred             HHHHHHHHHHCCCceEE
Confidence            33334455566664443

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=97.13  E-value=0.0016  Score=48.15  Aligned_cols=104  Identities=15%  Similarity=0.198  Sum_probs=73.3

Q ss_pred             CCCeEEEEcc----ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcc
Q 026360           35 EGKTVGTVGC----GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (240)
Q Consensus        35 ~g~~vgIIG~----G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i  110 (240)
                      .-|+|+|||.    +..|..+++.|+..|+++..+.+++...+   -.|...+.++.++-..-|++++++| .+....++
T Consensus        12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~---i~g~~~~~~l~~i~~~iD~v~v~~p-~~~v~~~v   87 (136)
T d1iuka_          12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEE---LFGEEAVASLLDLKEPVDILDVFRP-PSALMDHL   87 (136)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSE---ETTEECBSSGGGCCSCCSEEEECSC-HHHHTTTH
T ss_pred             CCCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccce---eeceecccchhhccCCCceEEEecc-HHHHHHHH
Confidence            4679999996    78999999999999999999987542211   2366667789998888999999998 23344444


Q ss_pred             cHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360          111 DKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       111 ~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                      . +.. .+...++++..|   ..+ +++.+..++..+.
T Consensus        88 ~-~~~-~~g~k~i~~q~G---~~~-~e~~~~a~~~Gi~  119 (136)
T d1iuka_          88 P-EVL-ALRPGLVWLQSG---IRH-PEFEKALKEAGIP  119 (136)
T ss_dssp             H-HHH-HHCCSCEEECTT---CCC-HHHHHHHHHTTCC
T ss_pred             H-HHH-hhCCCeEEEecC---ccC-HHHHHHHHHcCCE
Confidence            3 333 345667887665   334 4556666665554

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.13  E-value=0.0012  Score=51.22  Aligned_cols=96  Identities=13%  Similarity=0.105  Sum_probs=66.8

Q ss_pred             ccCCCeEEEEc-c-ChHHHHHHHHhccCCCEEEEEcCCCC--ChhH-------HHhcC--ceecCCHHhhcCcCCEEEEc
Q 026360           33 DLEGKTVGTVG-C-GRIGKLLLQRLKPFNCNLLYHDRVKM--DPQL-------EKETG--AKFEEDLDTMLPKCDIVVVN   99 (240)
Q Consensus        33 ~l~g~~vgIIG-~-G~iG~~~A~~l~~~G~~V~~~d~~~~--~~~~-------~~~~g--~~~~~~l~ell~~aDiVvl~   99 (240)
                      .|.|.+|++|| . -++.++++..+..+|+++.+..|..-  +.+.       ....|  +...+++++.++.+|+|...
T Consensus         2 ~l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~   81 (185)
T d1dxha2           2 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD   81 (185)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEee
Confidence            47899999999 3 58999999999999999999998532  1111       11123  34567999999999999876


Q ss_pred             CCCCh----h---------h-hhcccHHHHccCCCCCEEEEcC
Q 026360          100 TPLTE----K---------T-RGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       100 lp~~~----~---------t-~~~i~~~~l~~mk~gailIN~s  128 (240)
                      .-.+.    .         . ..+........+|+++++..+.
T Consensus        82 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak~~~i~MH~L  124 (185)
T d1dxha2          82 VWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL  124 (185)
T ss_dssp             CCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred             hhhhhhhhhhhHHHHHHHhhhheeccHHHHhhcCCCEEEEcCC
Confidence            52111    0         0 1222344556678999998876

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=97.12  E-value=0.0026  Score=48.32  Aligned_cols=67  Identities=21%  Similarity=0.201  Sum_probs=51.3

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceec-------CCHHhhc-----CcCCEEEEcCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-------EDLDTML-----PKCDIVVVNTP  101 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-------~~l~ell-----~~aDiVvl~lp  101 (240)
                      .|.+|.|+|.|.+|...+..++.+|. +|++.++++.+.+.+++.|....       +..++..     ...|+++-+..
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~~G  107 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIG  107 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEecCC
Confidence            58999999999999999999999985 78899988877788888876422       1122222     24788888876

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.09  E-value=0.00055  Score=53.15  Aligned_cols=66  Identities=23%  Similarity=0.293  Sum_probs=43.7

Q ss_pred             eEEEEccChHHHHHHHHhccC-CCEEEEEc-CCCCChhHH------------------HhcCceecCCHHhhcCcCCEEE
Q 026360           38 TVGTVGCGRIGKLLLQRLKPF-NCNLLYHD-RVKMDPQLE------------------KETGAKFEEDLDTMLPKCDIVV   97 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~~~-G~~V~~~d-~~~~~~~~~------------------~~~g~~~~~~l~ell~~aDiVv   97 (240)
                      ||||.|+|+||+.+++.+... +++|++++ +.+......                  .+.+.....+++++++++|+|+
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiVi   82 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV   82 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEEE
Confidence            799999999999999998864 57877664 433211111                  1112222345667777899999


Q ss_pred             EcCCCC
Q 026360           98 VNTPLT  103 (240)
Q Consensus        98 l~lp~~  103 (240)
                      -|+|..
T Consensus        83 ecTG~f   88 (178)
T d1b7go1          83 DTTPNG   88 (178)
T ss_dssp             ECCSTT
T ss_pred             ECCCCc
Confidence            999843

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=97.08  E-value=0.00041  Score=48.37  Aligned_cols=67  Identities=18%  Similarity=0.173  Sum_probs=48.1

Q ss_pred             CCCeEEEEccChHHHH-HHHHhccCCCEEEEEcCCCCC-hhHHHhcCceec-CCHHhhcCcCCEEEEcCC
Q 026360           35 EGKTVGTVGCGRIGKL-LLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFE-EDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~-~A~~l~~~G~~V~~~d~~~~~-~~~~~~~g~~~~-~~l~ell~~aDiVvl~lp  101 (240)
                      ..+++=+||.|.+|.+ +|+.|+..|++|.++|....+ .+...+.|+... ..-.+.+.+.|+|+..-.
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S~A   76 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSSA   76 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEECTT
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccCCCCCEEEECCC
Confidence            5789999999999954 599999999999999975422 233445676432 233445688898877643

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.08  E-value=0.00021  Score=54.63  Aligned_cols=65  Identities=9%  Similarity=0.145  Sum_probs=43.5

Q ss_pred             CeEEEEccChHHHHHHHH--hc---cC-CCEEEEEcCCCCChhHHHh-------c--CceecCCHHhhcCcCCEEEEcCC
Q 026360           37 KTVGTVGCGRIGKLLLQR--LK---PF-NCNLLYHDRVKMDPQLEKE-------T--GAKFEEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~--l~---~~-G~~V~~~d~~~~~~~~~~~-------~--g~~~~~~l~ell~~aDiVvl~lp  101 (240)
                      +||+|||.|++|...+-.  ++   .+ +-++..+|.++...+....       .  .+....+.++.+++||+|+++.-
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~   80 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR   80 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence            589999999988776632  21   12 3589999987543322111       1  12334678899999999999875

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=0.00083  Score=50.32  Aligned_cols=93  Identities=24%  Similarity=0.298  Sum_probs=56.2

Q ss_pred             CeEEEEcc-ChHHHHHHHHhc---cCCCEEEEEcCCCCChhHHHhc-Cc------e--ecCCHHhhcCcCCEEEEcCCC-
Q 026360           37 KTVGTVGC-GRIGKLLLQRLK---PFNCNLLYHDRVKMDPQLEKET-GA------K--FEEDLDTMLPKCDIVVVNTPL-  102 (240)
Q Consensus        37 ~~vgIIG~-G~iG~~~A~~l~---~~G~~V~~~d~~~~~~~~~~~~-g~------~--~~~~l~ell~~aDiVvl~lp~-  102 (240)
                      +||+|||. |.+|..+|..|.   .++-++..+|..+.....+.++ ..      .  ...+..+.+++||+|+++.-. 
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~~   80 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVR   80 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSCC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCcc
Confidence            58999995 999999998764   3467899999754322221111 10      1  112334568899999998632 


Q ss_pred             -Chh-h--------hhccc--HHHHccCCCCCEEEEcCC
Q 026360          103 -TEK-T--------RGMFD--KDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       103 -~~~-t--------~~~i~--~~~l~~mk~gailIN~sr  129 (240)
                       .+. +        ..++-  .+.+....|++++|.++.
T Consensus        81 ~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtN  119 (145)
T d2cmda1          81 RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN  119 (145)
T ss_dssp             CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccC
Confidence             221 1        11111  123444568899999874

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.07  E-value=0.00062  Score=46.82  Aligned_cols=65  Identities=12%  Similarity=0.072  Sum_probs=47.2

Q ss_pred             CCeEEEEccChHHH-HHHHHhccCCCEEEEEcCCCCC-hhHHHhcCceec-CCHHhhcCcCCEEEEcC
Q 026360           36 GKTVGTVGCGRIGK-LLLQRLKPFNCNLLYHDRVKMD-PQLEKETGAKFE-EDLDTMLPKCDIVVVNT  100 (240)
Q Consensus        36 g~~vgIIG~G~iG~-~~A~~l~~~G~~V~~~d~~~~~-~~~~~~~g~~~~-~~l~ell~~aDiVvl~l  100 (240)
                      .++|=+||.|.+|. ++|+.|+..|++|.++|....+ .+..++.|+... ..-.+.+.++|+|+..-
T Consensus         1 ~~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~Ss   68 (89)
T d1j6ua1           1 HMKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTP   68 (89)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEECT
T ss_pred             CcEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEec
Confidence            36888999999998 6799999999999999986422 233456676532 12234467899887764

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=97.07  E-value=0.00032  Score=56.09  Aligned_cols=67  Identities=16%  Similarity=0.155  Sum_probs=46.7

Q ss_pred             CCeEEEEccChHHHH-HHHHhccC-CCEEE-EEcCCCCChhH-HHhcCc-----eecCCHHhhcC--cCCEEEEcCCC
Q 026360           36 GKTVGTVGCGRIGKL-LLQRLKPF-NCNLL-YHDRVKMDPQL-EKETGA-----KFEEDLDTMLP--KCDIVVVNTPL  102 (240)
Q Consensus        36 g~~vgIIG~G~iG~~-~A~~l~~~-G~~V~-~~d~~~~~~~~-~~~~g~-----~~~~~l~ell~--~aDiVvl~lp~  102 (240)
                      --+|||||+|.+|+. ++..++.. +++|+ ++|+++...+. .+..++     ..+.+++++++  +.|+|++++|.
T Consensus        33 ~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~  110 (221)
T d1h6da1          33 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPN  110 (221)
T ss_dssp             CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCG
T ss_pred             CEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccch
Confidence            458999999999975 56666654 67766 66876543332 334444     23568999886  47899999994

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=97.06  E-value=0.00052  Score=52.83  Aligned_cols=66  Identities=18%  Similarity=0.186  Sum_probs=44.4

Q ss_pred             CCeEEEEccChHHHHHHH---Hhc--cC-CCEEEEEcCCCCChhH--------HHhcC----ceecCCHHhhcCcCCEEE
Q 026360           36 GKTVGTVGCGRIGKLLLQ---RLK--PF-NCNLLYHDRVKMDPQL--------EKETG----AKFEEDLDTMLPKCDIVV   97 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~---~l~--~~-G~~V~~~d~~~~~~~~--------~~~~g----~~~~~~l~ell~~aDiVv   97 (240)
                      ++||+|||.|++|...+.   .++  .+ +-++..+|.++...+.        ....+    +....+.++.++.||+|+
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv   81 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   81 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe
Confidence            579999999999976432   332  22 4589999987533221        11111    234468999999999999


Q ss_pred             EcCC
Q 026360           98 VNTP  101 (240)
Q Consensus        98 l~lp  101 (240)
                      ++..
T Consensus        82 ~~~~   85 (171)
T d1obba1          82 NTAM   85 (171)
T ss_dssp             ECCC
T ss_pred             eecc
Confidence            8754

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.01  E-value=0.00082  Score=51.06  Aligned_cols=87  Identities=18%  Similarity=0.134  Sum_probs=60.0

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceec-------CCHHhhc-----CcCCEEEEcCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-------EDLDTML-----PKCDIVVVNTP  101 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-------~~l~ell-----~~aDiVvl~lp  101 (240)
                      .|.+|.|+|.|.+|...++.++..|. .|++.++++.+.+.++++|+..+       ++.++.+     ..+|+|+-++.
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~~G  107 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG  107 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeecCC
Confidence            58899999999999999999999996 57777887767778888886432       1222222     34788888876


Q ss_pred             CChhhhhcccHHHHccCCCCCEEEE
Q 026360          102 LTEKTRGMFDKDRIAKMKKGVLIVN  126 (240)
Q Consensus       102 ~~~~t~~~i~~~~l~~mk~gailIN  126 (240)
                      .. .    ..+..+..+++|..++-
T Consensus       108 ~~-~----~~~~~~~~~~~g~~~~~  127 (176)
T d2fzwa2         108 NV-K----VMRAALEACHKGWGVSV  127 (176)
T ss_dssp             CH-H----HHHHHHHTBCTTTCEEE
T ss_pred             CH-H----HHHHHHHhhcCCceeEE
Confidence            22 1    12344555666654443

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.0012  Score=50.04  Aligned_cols=95  Identities=17%  Similarity=0.299  Sum_probs=64.3

Q ss_pred             cCCCeEEEEc---cChHHHHHHHHhccCCC-EEEEEcCCCCCh-----hHHHhcC--ceecCCHHhhcCcCCEEEEcCCC
Q 026360           34 LEGKTVGTVG---CGRIGKLLLQRLKPFNC-NLLYHDRVKMDP-----QLEKETG--AKFEEDLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        34 l~g~~vgIIG---~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~-----~~~~~~g--~~~~~~l~ell~~aDiVvl~lp~  102 (240)
                      |.|.+|++||   .|++.++++..+..+|. .+++..+.....     ...+..|  +....+++++++++|+|......
T Consensus         2 l~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~~   81 (160)
T d1ekxa2           2 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQ   81 (160)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEECCCC
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEeeccc
Confidence            6899999999   47799999999999975 456665543221     1223333  34567899999999999876433


Q ss_pred             Chh----------hhhcccHHHHccCCCCCEEEEcC
Q 026360          103 TEK----------TRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       103 ~~~----------t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      .+.          ....++.+.++.++++++|..+.
T Consensus        82 ~e~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~mHcL  117 (160)
T d1ekxa2          82 KERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL  117 (160)
T ss_dssp             GGGCCGGGGGGCSCSCCBCGGGGTTCCTTCEEECCS
T ss_pred             ccccchHHHHHHHHHhhccHHHHHhcCcceeeecCC
Confidence            221          11234567777888888887764

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.92  E-value=0.0014  Score=47.95  Aligned_cols=108  Identities=15%  Similarity=0.258  Sum_probs=70.9

Q ss_pred             cCCCeEEEEcc----ChHHHHHHHHhccCC-CEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhh
Q 026360           34 LEGKTVGTVGC----GRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (240)
Q Consensus        34 l~g~~vgIIG~----G~iG~~~A~~l~~~G-~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~  108 (240)
                      ++-++|+|||.    |..|..+.+.|+..| .+|+.+++....     -.|...+.+++|+-...|.+++++| .+.+..
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~-----i~G~~~y~sl~dlp~~vDlvvi~vp-~~~~~~   79 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEE-----VQGVKAYKSVKDIPDEIDLAIIVVP-KRFVKD   79 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSE-----ETTEECBSSTTSCSSCCSEEEECSC-HHHHHH
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccc-----cCCeEeecchhhcCCCCceEEEecC-hHHhHH
Confidence            56789999996    899999999998866 689999985422     2477777899999889999999999 334444


Q ss_pred             cccHHHHccCCCCCEEEEcCCCc-----ccCHHHHHHHHHhCCcc
Q 026360          109 MFDKDRIAKMKKGVLIVNNARGA-----IMDTQAVVDACSSGHIA  148 (240)
Q Consensus       109 ~i~~~~l~~mk~gailIN~srg~-----~vd~~aL~~aL~~g~i~  148 (240)
                      ++. +..+.=-+.++++.-+-++     ...+++|.+..++..+.
T Consensus        80 ~~~-~~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~gir  123 (129)
T d2csua1          80 TLI-QCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMR  123 (129)
T ss_dssp             HHH-HHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCE
T ss_pred             HHH-HHHHcCCCEEEEecccccccchhhHHHHHHHHHHHHHcCCE
Confidence            443 3332222233443333222     22334566666665554

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.90  E-value=0.00056  Score=52.12  Aligned_cols=96  Identities=15%  Similarity=0.157  Sum_probs=58.9

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCChh-HHHh-------cCc---eecCCHHhhcCcCCEEEEc
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEKE-------TGA---KFEEDLDTMLPKCDIVVVN   99 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~-~~~~-------~g~---~~~~~l~ell~~aDiVvl~   99 (240)
                      .+...||+|||.|.+|..+|..+...|.  ++..+|.+..... .+.+       .+.   ....+. +.+.+||+|+++
T Consensus        16 ~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~-~~~~~adivvit   94 (159)
T d2ldxa1          16 KLSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY-NVSANSKLVIIT   94 (159)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG-GGGTTEEEEEEC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch-hhhccccEEEEe
Confidence            3566799999999999999999987765  7999997642211 1111       111   122344 456899999998


Q ss_pred             CCC--Ch-hhhhc-c--c----HHH---HccCCCCCEEEEcCC
Q 026360          100 TPL--TE-KTRGM-F--D----KDR---IAKMKKGVLIVNNAR  129 (240)
Q Consensus       100 lp~--~~-~t~~~-i--~----~~~---l~~mk~gailIN~sr  129 (240)
                      ...  .+ .++.- +  +    ++.   +....|++++++++.
T Consensus        95 ag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN  137 (159)
T d2ldxa1          95 AGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN  137 (159)
T ss_dssp             CSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS
T ss_pred             cccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence            632  11 12211 1  1    112   223467899999875

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.84  E-value=0.00054  Score=51.27  Aligned_cols=91  Identities=12%  Similarity=0.178  Sum_probs=55.7

Q ss_pred             CeEEEEccChHHHHHHHHhccCCC--EEEEEcCCCCChh-HHH--hc-----C---ceecCCHHhhcCcCCEEEEcCCC-
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ-LEK--ET-----G---AKFEEDLDTMLPKCDIVVVNTPL-  102 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~-~~~--~~-----g---~~~~~~l~ell~~aDiVvl~lp~-  102 (240)
                      .||+|||.|.+|..+|..+...|.  ++..+|.++...+ .+.  +.     +   +....+. +.+++||+|+++.-. 
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~-~~~~daDvVVitaG~~   80 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAGPR   80 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCH-HHhhCCcEEEEecccc
Confidence            479999999999999988876665  7999998642211 111  00     1   1123344 458899999998632 


Q ss_pred             -Ch-hh--------hhccc--HHHHccCCCCCEEEEcC
Q 026360          103 -TE-KT--------RGMFD--KDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       103 -~~-~t--------~~~i~--~~~l~~mk~gailIN~s  128 (240)
                       .+ ++        ..++.  ...+....|+++++.++
T Consensus        81 ~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt  118 (143)
T d1llda1          81 QKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT  118 (143)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred             cCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeC
Confidence             11 11        11110  12234456788888887

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=96.84  E-value=0.002  Score=52.49  Aligned_cols=38  Identities=21%  Similarity=0.364  Sum_probs=34.6

Q ss_pred             cccCCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           32 YDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        32 ~~l~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      ++|+||++.|.| .+.||+++|+.|.+.|++|++.++++
T Consensus         2 f~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~   40 (258)
T d1ae1a_           2 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE   40 (258)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            468999999999 57899999999999999999999864

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.78  E-value=0.0015  Score=48.69  Aligned_cols=86  Identities=13%  Similarity=0.093  Sum_probs=55.1

Q ss_pred             eEEEEccChHHHHHHHHhccCCCEEEEEcCCCCCh----hHHHhcCceec----CCHH----hhcCcCCEEEEcCCCChh
Q 026360           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDP----QLEKETGAKFE----EDLD----TMLPKCDIVVVNTPLTEK  105 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~----~~~~~~g~~~~----~~l~----ell~~aDiVvl~lp~~~~  105 (240)
                      .+-|+|+|.+|+.+++.|...|.+|++.+.++...    +.....|+...    .+.+    .-+++||.++++++..+.
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~~   84 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDAD   84 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccHHH
Confidence            58899999999999999999999999998765321    11222344322    1222    225779999999986544


Q ss_pred             hhhcccHHHHccCCCCCEEE
Q 026360          106 TRGMFDKDRIAKMKKGVLIV  125 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailI  125 (240)
                      +  +......+.+.|...+|
T Consensus        85 n--~~~~~~~r~~~~~~~ii  102 (153)
T d1id1a_          85 N--AFVVLSAKDMSSDVKTV  102 (153)
T ss_dssp             H--HHHHHHHHHHTSSSCEE
T ss_pred             H--HHHHHHHHHhCCCCceE
Confidence            3  33233444555554343

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.71  E-value=0.00086  Score=51.56  Aligned_cols=90  Identities=20%  Similarity=0.148  Sum_probs=67.2

Q ss_pred             CCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-----CC-HHhhc-----CcCCEEEEcCCC
Q 026360           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----ED-LDTML-----PKCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~-l~ell-----~~aDiVvl~lp~  102 (240)
                      .|.+|.|.|. |.+|...++.++..|++|++.++++.+.+..++.|+..+     ++ .+.++     ...|+|+-++. 
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG-  107 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG-  107 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC-
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecC-
Confidence            5899999997 779999999999999999999887656667777775421     11 22222     34899999886 


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEEcCCC
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVNNARG  130 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN~srg  130 (240)
                       .+    ...+.++.++++..++.++..
T Consensus       108 -~~----~~~~~~~~l~~~G~~v~~G~~  130 (182)
T d1v3va2         108 -GE----FLNTVLSQMKDFGKIAICGAI  130 (182)
T ss_dssp             -HH----HHHHHGGGEEEEEEEEECCCG
T ss_pred             -ch----hhhhhhhhccCCCeEEeecce
Confidence             22    224678889999999999743

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=96.68  E-value=0.0014  Score=50.46  Aligned_cols=66  Identities=23%  Similarity=0.310  Sum_probs=41.0

Q ss_pred             CeEEEEccChHHHHHHHHhccC-CCEEEEEc-CCCCCh-hHHHhcCc------------------eecCCHHhhcCcCCE
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLLYHD-RVKMDP-QLEKETGA------------------KFEEDLDTMLPKCDI   95 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~-G~~V~~~d-~~~~~~-~~~~~~g~------------------~~~~~l~ell~~aDi   95 (240)
                      ++|||-|+|+||+.+.+.+... ..+|++.+ +.+... ......++                  ....+..++++++|+
T Consensus         2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vDv   81 (171)
T d1cf2o1           2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (171)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             eEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCCE
Confidence            5899999999999999988655 46766554 433211 11112221                  111244556677888


Q ss_pred             EEEcCCC
Q 026360           96 VVVNTPL  102 (240)
Q Consensus        96 Vvl~lp~  102 (240)
                      |+-|+|.
T Consensus        82 ViEcTG~   88 (171)
T d1cf2o1          82 VIDCTPE   88 (171)
T ss_dssp             EEECCST
T ss_pred             EEEccCC
Confidence            8888874

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=96.68  E-value=0.00099  Score=50.96  Aligned_cols=88  Identities=15%  Similarity=0.134  Sum_probs=66.8

Q ss_pred             CCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhc---------CcCCEEEEcCCCCh
Q 026360           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTML---------PKCDIVVVNTPLTE  104 (240)
Q Consensus        35 ~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell---------~~aDiVvl~lp~~~  104 (240)
                      .|.+|.|-| .|.+|....+.++..|++|++..++..+.+..+++|+..+-+.++..         +..|+|+-++-   
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~vg---   99 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVG---   99 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCC---
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccceEeccchhchhhhcccCCCceEEEecCc---
Confidence            577899999 59999999999999999999999888788888888875443333221         23677777664   


Q ss_pred             hhhhcccHHHHccCCCCCEEEEcC
Q 026360          105 KTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       105 ~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                         +....+.++.++++..+|.++
T Consensus       100 ---g~~~~~~~~~l~~~G~iv~~G  120 (167)
T d1tt7a2         100 ---GKQLASLLSKIQYGGSVAVSG  120 (167)
T ss_dssp             ---THHHHHHHTTEEEEEEEEECC
T ss_pred             ---HHHHHHHHHHhccCceEEEee
Confidence               112346788899999999887

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=96.68  E-value=0.00073  Score=51.57  Aligned_cols=88  Identities=19%  Similarity=0.147  Sum_probs=56.7

Q ss_pred             CCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec-----CCHHhhc------CcCCEEEEcCCC
Q 026360           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE-----EDLDTML------PKCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-----~~l~ell------~~aDiVvl~lp~  102 (240)
                      .|.+|.|.|. |.+|..+++.++..|++|++.++++.+.+..+++|+..+     .++.+-+      ...|+|+-++. 
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~~vi~~~~~d~~~~v~~~t~g~g~d~v~d~~g-  106 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVG-  106 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECSC-
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCeEEEECCCCCHHHHHHHHhCCCCeEEEEeCcc-
Confidence            4889999964 569999999999999999999988766667777775422     2232211      22466555553 


Q ss_pred             ChhhhhcccHHHHccCCCCCEEEEcC
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                       .++    ....+..++++..++..+
T Consensus       107 -~~~----~~~~~~~l~~~G~~v~~g  127 (179)
T d1qora2         107 -RDT----WERSLDCLQRRGLMVSFG  127 (179)
T ss_dssp             -GGG----HHHHHHTEEEEEEEEECC
T ss_pred             -HHH----HHHHHHHHhcCCeeeecc
Confidence             111    134455566666665554

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.60  E-value=0.001  Score=51.33  Aligned_cols=89  Identities=16%  Similarity=0.135  Sum_probs=66.4

Q ss_pred             cCCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceec----CCHHhhc-----CcCCEEEEcCCCC
Q 026360           34 LEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFE----EDLDTML-----PKCDIVVVNTPLT  103 (240)
Q Consensus        34 l~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~----~~l~ell-----~~aDiVvl~lp~~  103 (240)
                      -.|.+|.|.| .|.+|....+.++..|++|++..+++.+.+.+++.|...+    ...++..     ...|+|+-++.  
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vg--  107 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVG--  107 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECST--
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCC--
Confidence            4589999999 5999999999999999999999988888888888886432    1122221     24677777765  


Q ss_pred             hhhhhcccHHHHccCCCCCEEEEcC
Q 026360          104 EKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       104 ~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                          +..-.+.++.|+++..++.++
T Consensus       108 ----g~~~~~~l~~l~~~Griv~~G  128 (176)
T d1xa0a2         108 ----GRTLATVLSRMRYGGAVAVSG  128 (176)
T ss_dssp             ----TTTHHHHHHTEEEEEEEEECS
T ss_pred             ----chhHHHHHHHhCCCceEEEee
Confidence                223457788899999999987

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.59  E-value=0.0025  Score=48.93  Aligned_cols=66  Identities=29%  Similarity=0.312  Sum_probs=41.7

Q ss_pred             CeEEEEccChHHHHHHHHhccC-CCEEEEE-cCCCCCh-hHHHhcCc------------------eecCCHHhhcCcCCE
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLLYH-DRVKMDP-QLEKETGA------------------KFEEDLDTMLPKCDI   95 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~-G~~V~~~-d~~~~~~-~~~~~~g~------------------~~~~~l~ell~~aDi   95 (240)
                      .+|||.|+|+||+.+++.+... .++|+++ |+.+... ..+...++                  ....++.++.+++|+
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDv   82 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDI   82 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSE
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhccCCE
Confidence            5899999999999999988654 4676655 4543211 11222221                  112355566778888


Q ss_pred             EEEcCCC
Q 026360           96 VVVNTPL  102 (240)
Q Consensus        96 Vvl~lp~  102 (240)
                      |+=|+|.
T Consensus        83 ViEcTG~   89 (172)
T d2czca2          83 IVDATPG   89 (172)
T ss_dssp             EEECCST
T ss_pred             EEECCCC
Confidence            8888873

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=96.59  E-value=0.0064  Score=45.86  Aligned_cols=67  Identities=16%  Similarity=0.130  Sum_probs=51.3

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceecCC-------HHhhc-----CcCCEEEEcCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFEED-------LDTML-----PKCDIVVVNTP  101 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~~~-------l~ell-----~~aDiVvl~lp  101 (240)
                      .|.+|.|+|.|.+|...+..++..|. +|++.|+++.+.+.++++|+..+-+       .++..     ...|+++-++.
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~vid~~G  107 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVG  107 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSC
T ss_pred             CCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcceeeeecC
Confidence            58899999999999999999988876 6888998887788888888743211       12222     24788888886

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=96.57  E-value=0.0042  Score=46.11  Aligned_cols=92  Identities=12%  Similarity=0.229  Sum_probs=55.3

Q ss_pred             CeEEEEc-cChHHHHHHHHhccCCC--EEEEEcCCCCC-h--hHHHhc------C--ce-ecCCHHhhcCcCCEEEEcCC
Q 026360           37 KTVGTVG-CGRIGKLLLQRLKPFNC--NLLYHDRVKMD-P--QLEKET------G--AK-FEEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        37 ~~vgIIG-~G~iG~~~A~~l~~~G~--~V~~~d~~~~~-~--~~~~~~------g--~~-~~~~l~ell~~aDiVvl~lp  101 (240)
                      .||+||| .|.+|..+|..+...|.  ++..+|..... .  ..+.++      .  .. ...+. +.+++||+|+++.-
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~-~~~~~aDiVvitaG   79 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY-EDTAGSDVVVITAG   79 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG-GGGTTCSEEEECCC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH-HHhhhcCEEEEecc
Confidence            4899999 69999999999987665  79999963211 1  011111      1  11 12344 44689999999863


Q ss_pred             C--Chh-h--------hhccc--HHHHccCCCCCEEEEcCC
Q 026360          102 L--TEK-T--------RGMFD--KDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       102 ~--~~~-t--------~~~i~--~~~l~~mk~gailIN~sr  129 (240)
                      .  .+. +        ..++.  .+.+....|+++++.++.
T Consensus        80 ~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtN  120 (142)
T d1o6za1          80 IPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN  120 (142)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred             cccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecC
Confidence            2  221 1        11211  123455678899998863

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=96.43  E-value=0.0011  Score=51.10  Aligned_cols=89  Identities=13%  Similarity=0.096  Sum_probs=63.8

Q ss_pred             CCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHh-----hc--CcCCEEEEcCCCChhh
Q 026360           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDT-----ML--PKCDIVVVNTPLTEKT  106 (240)
Q Consensus        35 ~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~e-----ll--~~aDiVvl~lp~~~~t  106 (240)
                      .+.+|.|.| .|.+|+...+.++.+|++|++..+++.+.+..+++|+..+-+.++     .+  ...|.++-++.  .  
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad~vi~~~~~~~~~~l~~~~~~~vvD~Vg--g--  106 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGASRVLPRDEFAESRPLEKQVWAGAIDTVG--D--  106 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEEEEEEGGGSSSCCSSCCCCEEEEEESSC--H--
T ss_pred             CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhccccccccccHHHHHHHHhhcCCeeEEEcc--h--
Confidence            455777777 599999999999999999999998877777788888754322221     11  12477766664  1  


Q ss_pred             hhcccHHHHccCCCCCEEEEcCC
Q 026360          107 RGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       107 ~~~i~~~~l~~mk~gailIN~sr  129 (240)
                        ....+.++.++++..+|+++.
T Consensus       107 --~~~~~~l~~l~~~Griv~~G~  127 (177)
T d1o89a2         107 --KVLAKVLAQMNYGGCVAACGL  127 (177)
T ss_dssp             --HHHHHHHHTEEEEEEEEECCC
T ss_pred             --HHHHHHHHHhccccceEeecc
Confidence              123577888999999999874

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.43  E-value=0.0027  Score=48.48  Aligned_cols=66  Identities=18%  Similarity=0.211  Sum_probs=42.0

Q ss_pred             CeEEEEccChHHH--HHHHHhcc---CC-CEEEEEcCCCCCh--hHH--------HhcCc----eecCCHHhhcCcCCEE
Q 026360           37 KTVGTVGCGRIGK--LLLQRLKP---FN-CNLLYHDRVKMDP--QLE--------KETGA----KFEEDLDTMLPKCDIV   96 (240)
Q Consensus        37 ~~vgIIG~G~iG~--~~A~~l~~---~G-~~V~~~d~~~~~~--~~~--------~~~g~----~~~~~l~ell~~aDiV   96 (240)
                      .||.|||.|++|.  .++..++.   +. -++..+|.++...  +..        ...+.    ...++..+.++.||+|
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV   81 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV   81 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence            4899999997764  44444433   22 4799999865321  111        11122    2346788889999999


Q ss_pred             EEcCCC
Q 026360           97 VVNTPL  102 (240)
Q Consensus        97 vl~lp~  102 (240)
                      +++...
T Consensus        82 v~ta~~   87 (169)
T d1s6ya1          82 TTQFRV   87 (169)
T ss_dssp             EECCCT
T ss_pred             EEcccc
Confidence            999864

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.0029  Score=51.11  Aligned_cols=38  Identities=24%  Similarity=0.325  Sum_probs=34.3

Q ss_pred             cccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        32 ~~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      .+|.||++.|.|. +.||+.+|+.|...|++|++.+++.
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~   41 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK   41 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3699999999996 4699999999999999999999964

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.29  E-value=0.00023  Score=54.49  Aligned_cols=104  Identities=17%  Similarity=0.179  Sum_probs=57.5

Q ss_pred             CeEEEEccChHHHHHHHHhccCC----CEEEEEcCCCCChhHHHhcCceecCCHHhhcC--cCCEEEEcCCCChhhhhcc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFN----CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTPLTEKTRGMF  110 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G----~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDiVvl~lp~~~~t~~~i  110 (240)
                      .+|||||+|.+|+..++.++...    ..+...+... .  .....+... .+++++++  +.|+|++++|.  .+..-+
T Consensus         8 ~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~-~~~~e~l~~~~iD~V~I~tp~--~~H~~~   81 (172)
T d1lc0a1           8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRR-E--LGSLDEVRQ-ISLEDALRSQEIDVAYICSES--SSHEDY   81 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSS-C--CCEETTEEB-CCHHHHHHCSSEEEEEECSCG--GGHHHH
T ss_pred             cEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchH-H--HHHhhccCc-CCHHHHHhCCCcchhhhcccc--cccccc
Confidence            48999999999999988887642    2333332211 1  111122333 48888885  46889999993  333323


Q ss_pred             cHHHHccCCCCCEEEEcC-CCcccCHHHHHHHHHhCCcc
Q 026360          111 DKDRIAKMKKGVLIVNNA-RGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       111 ~~~~l~~mk~gailIN~s-rg~~vd~~aL~~aL~~g~i~  148 (240)
                      ....++.=|  .+++.== .-.+-+.++|.++.++.+..
T Consensus        82 ~~~al~~gk--~V~~EKP~a~~~~e~~~l~~~a~~~~~~  118 (172)
T d1lc0a1          82 IRQFLQAGK--HVLVEYPMTLSFAAAQELWELAAQKGRV  118 (172)
T ss_dssp             HHHHHHTTC--EEEEESCSCSCHHHHHHHHHHHHHTTCC
T ss_pred             cccccccch--hhhcCCCccccHHHHHHHHHHHHHcCCe
Confidence            333443322  2444421 12344556666666555443

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.29  E-value=0.0028  Score=47.30  Aligned_cols=64  Identities=20%  Similarity=0.336  Sum_probs=42.8

Q ss_pred             CeEEEEcc-ChHHHHHHHHhccCCC--EEEEEcCCCCCh--h-HHHh-------cC--cee---cCCHHhhcCcCCEEEE
Q 026360           37 KTVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVKMDP--Q-LEKE-------TG--AKF---EEDLDTMLPKCDIVVV   98 (240)
Q Consensus        37 ~~vgIIG~-G~iG~~~A~~l~~~G~--~V~~~d~~~~~~--~-~~~~-------~g--~~~---~~~l~ell~~aDiVvl   98 (240)
                      +||+|||. |.+|..+|..+...|.  ++..+|..+...  + .+.+       ..  .+.   ..+..+.+++||+|++
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi   80 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence            58999995 9999999999988774  899999754211  1 1111       01  111   1223457889999999


Q ss_pred             cC
Q 026360           99 NT  100 (240)
Q Consensus        99 ~l  100 (240)
                      +.
T Consensus        81 tA   82 (145)
T d1hyea1          81 TS   82 (145)
T ss_dssp             CC
T ss_pred             ec
Confidence            85

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=96.29  E-value=0.0078  Score=44.90  Aligned_cols=90  Identities=18%  Similarity=0.148  Sum_probs=49.2

Q ss_pred             CeEEEEc-cChHHHHHHHHhccC----CCEEEEEcCCCCChhHH---HhcCceecCCHHhhcCcCCEEEEcCCCChhhhh
Q 026360           37 KTVGTVG-CGRIGKLLLQRLKPF----NCNLLYHDRVKMDPQLE---KETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRG  108 (240)
Q Consensus        37 ~~vgIIG-~G~iG~~~A~~l~~~----G~~V~~~d~~~~~~~~~---~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~  108 (240)
                      +|||||| .|-+|+.+.+.|...    ..++..+..+.......   ..........-.+.+.++|++++|+|... +..
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~~-s~~   79 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGSY-TEK   79 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHHH-HHH
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCchH-HHH
Confidence            5899999 599999999877532    24565554332111110   00111111122355789999999999322 222


Q ss_pred             cccHHHHccCCCCCEEEEcCC
Q 026360          109 MFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       109 ~i~~~~l~~mk~gailIN~sr  129 (240)
                      + ..... .-...+++||.|.
T Consensus        80 ~-~~~l~-~~g~~~~VIDlSs   98 (147)
T d1mb4a1          80 V-YPALR-QAGWKGYWIDAAS   98 (147)
T ss_dssp             H-HHHHH-HTTCCSEEEESSS
T ss_pred             H-hHHHH-HcCCceEEEeCCc
Confidence            2 22222 2334467888873

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.25  E-value=0.0023  Score=50.64  Aligned_cols=34  Identities=24%  Similarity=0.275  Sum_probs=31.9

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      ||||.|||.|.-|-..|..|+..|++|++++.++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            6999999999999999999999999999999754

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=96.21  E-value=0.0062  Score=49.19  Aligned_cols=37  Identities=22%  Similarity=0.114  Sum_probs=33.3

Q ss_pred             cCCCeEEEEcc-C--hHHHHHHHHhccCCCEEEEEcCCCC
Q 026360           34 LEGKTVGTVGC-G--RIGKLLLQRLKPFNCNLLYHDRVKM   70 (240)
Q Consensus        34 l~g~~vgIIG~-G--~iG~~~A~~l~~~G~~V~~~d~~~~   70 (240)
                      |+||++.|.|. |  .||.++|+.|...|++|++.+++..
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   42 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            78999999996 4  5999999999999999999998753

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=96.21  E-value=0.0064  Score=49.82  Aligned_cols=54  Identities=15%  Similarity=0.138  Sum_probs=41.7

Q ss_pred             HHHcCCCccCc-ccccccccCCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           16 QVISGEWNVAG-VAYRAYDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        16 ~~~~g~w~~~~-~~~~~~~l~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      .+++.-|.... ...+..+|+||++.|.| .|.||+++|+.|...|++|++.+++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_           4 ALQSKFFSPLQKAMLPPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             HHHHHHSCCCCSCCSCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             hhhhhhcCcccccCCCCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            44555564322 12234689999999999 68999999999999999999999864

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.21  E-value=0.0094  Score=44.35  Aligned_cols=105  Identities=16%  Similarity=0.196  Sum_probs=57.3

Q ss_pred             CeEEEEcc-ChHHHHHHHHhccC----CCEEEEEcCCCCChh--HHHhcCce--ecCCHHhhcCcCCEEEEcCCCChhhh
Q 026360           37 KTVGTVGC-GRIGKLLLQRLKPF----NCNLLYHDRVKMDPQ--LEKETGAK--FEEDLDTMLPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        37 ~~vgIIG~-G~iG~~~A~~l~~~----G~~V~~~d~~~~~~~--~~~~~g~~--~~~~l~ell~~aDiVvl~lp~~~~t~  107 (240)
                      |+|||||. |.+|+.+.+.|...    -.++..+..+.....  ........  ...+ .+.+.++|++++++|.... .
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~-~~~~~~~DivF~a~~~~~s-~   79 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFD-LEALKALDIIVTCQGGDYT-N   79 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTC-HHHHHTCSEEEECSCHHHH-H
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccc-hhhhhcCcEEEEecCchHH-H
Confidence            58999996 99999999866432    235665654322111  11111111  1212 2356899999999994322 2


Q ss_pred             hcccHHHHccCCCCCEEEEcCCCcc-----------cCHHHHHHHHHhC
Q 026360          108 GMFDKDRIAKMKKGVLIVNNARGAI-----------MDTQAVVDACSSG  145 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~srg~~-----------vd~~aL~~aL~~g  145 (240)
                      .+ . ..+..-+.+.++|+.|.--=           |+.+.|..++++|
T Consensus        80 ~~-~-~~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~~~~~~g  126 (146)
T d1t4ba1          80 EI-Y-PKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNG  126 (146)
T ss_dssp             HH-H-HHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTT
T ss_pred             Hh-h-HHHHhcCCCeecccCCcccccCCCCcEECCCcCHHHHHHHHHcC
Confidence            21 2 22222344467888875332           3455666676653

>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.17  E-value=0.013  Score=45.58  Aligned_cols=100  Identities=17%  Similarity=0.323  Sum_probs=73.7

Q ss_pred             HHHHHhccCCCEEEEEcCC----CCChhHHHhcCceecCCHHhhcCcCCEEEEc-CCCChhhhhcccHHHHccCCCCCEE
Q 026360           50 LLLQRLKPFNCNLLYHDRV----KMDPQLEKETGAKFEEDLDTMLPKCDIVVVN-TPLTEKTRGMFDKDRIAKMKKGVLI  124 (240)
Q Consensus        50 ~~A~~l~~~G~~V~~~d~~----~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~-lp~~~~t~~~i~~~~l~~mk~gail  124 (240)
                      ..++.|...|++|++=.--    .-+.+...+.|++.+++.++++.++|+|+-. .|...+    ...+.++.||+|+++
T Consensus        21 ~~vkkl~~~G~~V~vE~gaG~~a~fsD~~Y~~aGA~i~~~~~~~~~~~diilkV~~P~~~e----~~~~ei~~lk~g~~l   96 (194)
T d1l7da2          21 EVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAE----EGTDEVALIKEGAVL   96 (194)
T ss_dssp             HHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEECCCCGG----GSCCGGGGSCTTCEE
T ss_pred             HHHHHHHHCCCEEEEEcCcccccCCCHHHHHHhhhhcchhhhhhhhcccceeEecCCcccc----cchhHhhhccCceEE
Confidence            4678888899999875422    1234455667988888889999999988654 453322    233567889999999


Q ss_pred             EEcCCCcccCHHHHHHHHHhCCccEEEeeCC
Q 026360          125 VNNARGAIMDTQAVVDACSSGHIAGYSGDVW  155 (240)
Q Consensus       125 IN~srg~~vd~~aL~~aL~~g~i~ga~lDV~  155 (240)
                      |..--  .....++.++|.+.++...++|..
T Consensus        97 i~~l~--p~~~~~~~~~l~~~~it~~a~e~i  125 (194)
T d1l7da2          97 MCHLG--ALTNRPVVEALTKRKITAYAMELM  125 (194)
T ss_dssp             EEECC--GGGCHHHHHHHHHTTCEEEEGGGC
T ss_pred             EEecc--cccchhHHHHHHhcCceEEeeecc
Confidence            98763  566778999999999999888854

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.12  E-value=0.002  Score=48.99  Aligned_cols=36  Identities=8%  Similarity=0.142  Sum_probs=32.5

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRVKM   70 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~~~   70 (240)
                      .+|||.|||.|..|-..|..|+..|++ |+++++.+.
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            479999999999999999999999995 999998654

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=96.11  E-value=0.0086  Score=45.98  Aligned_cols=88  Identities=18%  Similarity=0.080  Sum_probs=60.5

Q ss_pred             CCCeEEEE--ccChHHHHHHHHhccCCCEEEEEcCCCCChh----HHHhcCceecCCH------------Hhh----cCc
Q 026360           35 EGKTVGTV--GCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ----LEKETGAKFEEDL------------DTM----LPK   92 (240)
Q Consensus        35 ~g~~vgII--G~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~----~~~~~g~~~~~~l------------~el----l~~   92 (240)
                      .|.++.|+  |.|.+|....+.++.+|++|++..+++...+    ..+++|+..+-+.            .++    -..
T Consensus        28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~~  107 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGE  107 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCC
T ss_pred             CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhccCC
Confidence            47888888  6799999999999999999988876544332    3456675432111            111    134


Q ss_pred             CCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcC
Q 026360           93 CDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus        93 aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      .|+++-++. .+.     ....+..|+++..+|.++
T Consensus       108 vdvv~D~vg-~~~-----~~~~~~~l~~~G~~v~~G  137 (189)
T d1gu7a2         108 AKLALNCVG-GKS-----STGIARKLNNNGLMLTYG  137 (189)
T ss_dssp             EEEEEESSC-HHH-----HHHHHHTSCTTCEEEECC
T ss_pred             ceEEEECCC-cch-----hhhhhhhhcCCcEEEEEC
Confidence            788888875 111     245678899999999986

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0069  Score=48.35  Aligned_cols=41  Identities=15%  Similarity=0.113  Sum_probs=35.8

Q ss_pred             cccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCCh
Q 026360           32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP   72 (240)
Q Consensus        32 ~~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~   72 (240)
                      ++|+||++-|.|. +.||+++|+.|.+.|++|++.+++....
T Consensus         1 ~slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~   42 (248)
T d2o23a1           1 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGG   42 (248)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHH
Confidence            3689999999995 6799999999999999999999876443

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.07  E-value=0.0068  Score=44.13  Aligned_cols=84  Identities=18%  Similarity=0.119  Sum_probs=50.3

Q ss_pred             CeEEEEcc-ChHHHHHHHHhccCCCEEE-EEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHH
Q 026360           37 KTVGTVGC-GRIGKLLLQRLKPFNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDR  114 (240)
Q Consensus        37 ~~vgIIG~-G~iG~~~A~~l~~~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~  114 (240)
                      ++|||+|+ |+||+.+++.+...|+++. .+|++                 ..+.+..+|+|+--.. .+.+...+.  .
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~-----------------~~~~~~~~DVvIDFS~-p~~~~~~l~--~   60 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVN-----------------GVEELDSPDVVIDFSS-PEALPKTVD--L   60 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETT-----------------EEEECSCCSEEEECSC-GGGHHHHHH--H
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCC-----------------cHHHhccCCEEEEecC-HHHHHHHHH--H
Confidence            58999996 9999999999999999865 44432                 1223567898876543 122333222  1


Q ss_pred             HccCCCCCEEEEcCCCcccCHHHHHHHH
Q 026360          115 IAKMKKGVLIVNNARGAIMDTQAVVDAC  142 (240)
Q Consensus       115 l~~mk~gailIN~srg~~vd~~aL~~aL  142 (240)
                        ..+.+.-+|-..+|---+..+.++.+
T Consensus        61 --~~~~~~p~ViGTTG~~~~~~~~i~~~   86 (128)
T d1vm6a3          61 --CKKYRAGLVLGTTALKEEHLQMLREL   86 (128)
T ss_dssp             --HHHHTCEEEECCCSCCHHHHHHHHHH
T ss_pred             --HHhcCCCEEEEcCCCCHHHHHHHHHH
Confidence              12445567767777433333444443

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=96.05  E-value=0.013  Score=44.93  Aligned_cols=96  Identities=14%  Similarity=0.120  Sum_probs=66.1

Q ss_pred             ccCCCeEEEEccC--hHHHHHHHHhccCCCEEEEEcCCCCCh-h--------HHHhcC--ceecCCHHhhcCcCCEEEEc
Q 026360           33 DLEGKTVGTVGCG--RIGKLLLQRLKPFNCNLLYHDRVKMDP-Q--------LEKETG--AKFEEDLDTMLPKCDIVVVN   99 (240)
Q Consensus        33 ~l~g~~vgIIG~G--~iG~~~A~~l~~~G~~V~~~d~~~~~~-~--------~~~~~g--~~~~~~l~ell~~aDiVvl~   99 (240)
                      .+.|.+|+++|=|  ++.++++..+..+|+++.++.|..... +        .....|  +...+++++.++.+|+|...
T Consensus         2 ~~~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~   81 (183)
T d1duvg2           2 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD   81 (183)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEEEEE
Confidence            4789999999954  799999999999999999998753211 1        112223  34567999999999999875


Q ss_pred             CCCC----h---h-------hhhcccHHHHccCCCCCEEEEcC
Q 026360          100 TPLT----E---K-------TRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       100 lp~~----~---~-------t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      .=..    .   .       ....++.......+++++|..+.
T Consensus        82 ~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~MH~L  124 (183)
T d1duvg2          82 VWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCL  124 (183)
T ss_dssp             CSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             ehhhhhhhhhhhhhhhhhhcccccccHHHHhcccCCeEEEccC
Confidence            4211    0   0       11233445556678888888875

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.04  E-value=0.016  Score=44.41  Aligned_cols=97  Identities=24%  Similarity=0.354  Sum_probs=60.4

Q ss_pred             CeEEEEc-cChHHHHHHHHhccC-CCEEEEEc-CCCCChhHHH---h-cCc--eecCCHHhhcCcCCEEEEcCCCChhhh
Q 026360           37 KTVGTVG-CGRIGKLLLQRLKPF-NCNLLYHD-RVKMDPQLEK---E-TGA--KFEEDLDTMLPKCDIVVVNTPLTEKTR  107 (240)
Q Consensus        37 ~~vgIIG-~G~iG~~~A~~l~~~-G~~V~~~d-~~~~~~~~~~---~-~g~--~~~~~l~ell~~aDiVvl~lp~~~~t~  107 (240)
                      .+|||+| -|-+|+.+.+.|..+ ..++.... ++........   . .+.  ....+.+++..++|++++++|....  
T Consensus         2 ikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~s--   79 (176)
T d1vkna1           2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGAS--   79 (176)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHH--
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHHH--
Confidence            4899999 599999999999865 34655553 3221111111   1 111  1124667777889999999995433  


Q ss_pred             hcccHHHHccCCCCCEEEEcCCCcccCHHHHHH
Q 026360          108 GMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVD  140 (240)
Q Consensus       108 ~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~  140 (240)
                          .+..... .+..+||.|..-=.+....++
T Consensus        80 ----~~~~~~~-~~~~VIDlSadfRl~~~~~y~  107 (176)
T d1vkna1          80 ----YDLVREL-KGVKIIDLGADFRFDDPGVYR  107 (176)
T ss_dssp             ----HHHHTTC-CSCEEEESSSTTTCSSHHHHH
T ss_pred             ----HHHHHhh-ccceEEecCccccccchhhHH
Confidence                2333333 578999999776665544444

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.90  E-value=0.0051  Score=43.87  Aligned_cols=34  Identities=26%  Similarity=0.401  Sum_probs=31.7

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      .+++.|||.|.+|-.+|..|+.+|.+|+++.+..
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhc
Confidence            4799999999999999999999999999999754

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.89  E-value=0.0049  Score=44.24  Aligned_cols=33  Identities=15%  Similarity=0.149  Sum_probs=31.0

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      +++.|||.|.||-.+|..|..+|.+|+++.+.+
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~   56 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP   56 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEecc
Confidence            699999999999999999999999999998754

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.89  E-value=0.005  Score=43.63  Aligned_cols=34  Identities=21%  Similarity=0.235  Sum_probs=31.5

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      -+++.|||.|.+|-.+|..+..+|.+|+++.+.+
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~   55 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAG   55 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEecc
Confidence            3799999999999999999999999999998765

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=95.88  E-value=0.009  Score=45.47  Aligned_cols=67  Identities=16%  Similarity=0.112  Sum_probs=43.1

Q ss_pred             CCeEEEEccChHHHHHH--HHhc---cC-CCEEEEEcCCCCChhH----H----HhcC----ceecCCHHhhcCcCCEEE
Q 026360           36 GKTVGTVGCGRIGKLLL--QRLK---PF-NCNLLYHDRVKMDPQL----E----KETG----AKFEEDLDTMLPKCDIVV   97 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A--~~l~---~~-G~~V~~~d~~~~~~~~----~----~~~g----~~~~~~l~ell~~aDiVv   97 (240)
                      .-||.|||.|.+|...+  ..+.   .+ +-++..+|.++...+.    .    ...+    +....+.+|.++.||+|+
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vv   82 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM   82 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEE
Confidence            45899999999876532  2232   22 2379999987543221    1    1112    234468889999999999


Q ss_pred             EcCCC
Q 026360           98 VNTPL  102 (240)
Q Consensus        98 l~lp~  102 (240)
                      ++.-.
T Consensus        83 itag~   87 (167)
T d1u8xx1          83 AHIRV   87 (167)
T ss_dssp             ECCCT
T ss_pred             ECCCc
Confidence            99753

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.87  E-value=0.0038  Score=48.64  Aligned_cols=93  Identities=16%  Similarity=0.167  Sum_probs=64.3

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHhcCceec-----CCHH----hhc--CcCCEEEEcCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKETGAKFE-----EDLD----TML--PKCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~-----~~l~----ell--~~aDiVvl~lp~  102 (240)
                      .|.+|.|+|.|.+|...++.++..|. +|++.|+++.+.+.++++|...+     .++.    ++.  ...|+++-++..
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~vG~  104 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVGF  104 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCCT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECccc
Confidence            48899999999999999999998888 68899988767777888887533     1222    222  247898887752


Q ss_pred             Chh-----------hhhcccHHHHccCCCCCEEEEcC
Q 026360          103 TEK-----------TRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       103 ~~~-----------t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      ...           +... -...+..++++..++-++
T Consensus       105 ~~~~~~~~~~~~~~~~~~-l~~~~~~~r~gG~v~~~G  140 (195)
T d1kola2         105 EARGHGHEGAKHEAPATV-LNSLMQVTRVAGKIGIPG  140 (195)
T ss_dssp             TCBCSSTTGGGSBCTTHH-HHHHHHHEEEEEEEEECS
T ss_pred             cccCCcccceeecCcHHH-HHHHHHHHhcCCEEEEee
Confidence            110           0111 234556678888887776

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=95.87  E-value=0.0044  Score=49.55  Aligned_cols=68  Identities=13%  Similarity=0.187  Sum_probs=44.6

Q ss_pred             CCCeEEEEccCh----HHHHHHHHhccC--CCEEE-EEcCCCCChh-HHHhcCc---eecCCHHhhcC--cCCEEEEcCC
Q 026360           35 EGKTVGTVGCGR----IGKLLLQRLKPF--NCNLL-YHDRVKMDPQ-LEKETGA---KFEEDLDTMLP--KCDIVVVNTP  101 (240)
Q Consensus        35 ~g~~vgIIG~G~----iG~~~A~~l~~~--G~~V~-~~d~~~~~~~-~~~~~g~---~~~~~l~ell~--~aDiVvl~lp  101 (240)
                      +-.+|||||+|.    +++.....++..  +++|+ ++|+++...+ ..+..+.   ..+++++++++  +-|+|++++|
T Consensus        15 k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~tp   94 (237)
T d2nvwa1          15 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVK   94 (237)
T ss_dssp             CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSC
T ss_pred             CCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccCC
Confidence            446899999987    445555555543  57866 5777653333 2344443   34579999985  5779999998


Q ss_pred             C
Q 026360          102 L  102 (240)
Q Consensus       102 ~  102 (240)
                      .
T Consensus        95 ~   95 (237)
T d2nvwa1          95 V   95 (237)
T ss_dssp             H
T ss_pred             C
Confidence            4

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=95.82  E-value=0.024  Score=43.44  Aligned_cols=93  Identities=14%  Similarity=0.150  Sum_probs=54.7

Q ss_pred             CCeEEEEc-cChHHHHHHHHhccC-CCEEEEEc-CCCCChhHHHh---c-Cc---eecCCHHhhcCcCCEEEEcCCCChh
Q 026360           36 GKTVGTVG-CGRIGKLLLQRLKPF-NCNLLYHD-RVKMDPQLEKE---T-GA---KFEEDLDTMLPKCDIVVVNTPLTEK  105 (240)
Q Consensus        36 g~~vgIIG-~G~iG~~~A~~l~~~-G~~V~~~d-~~~~~~~~~~~---~-g~---~~~~~l~ell~~aDiVvl~lp~~~~  105 (240)
                      ..+|||+| .|-+|+.+.+.|... .+++.... ++.........   . +.   ......++...++|++++++|..  
T Consensus         5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~--   82 (183)
T d2cvoa1           5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHG--   82 (183)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSS--
T ss_pred             ccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccccc--
Confidence            45799999 599999999999875 44655443 32211111111   1 10   11223345678899999999943  


Q ss_pred             hhhcccHHHHccCCCCCEEEEcCCCcccC
Q 026360          106 TRGMFDKDRIAKMKKGVLIVNNARGAIMD  134 (240)
Q Consensus       106 t~~~i~~~~l~~mk~gailIN~srg~~vd  134 (240)
                          ...+....+.....+|+.+.+.-..
T Consensus        83 ----~s~~~~~~l~~~~~~v~~~~~~~~~  107 (183)
T d2cvoa1          83 ----TTQEIIKGLPQELKIVDLSADFRLR  107 (183)
T ss_dssp             ----HHHHHHHTSCSSCEEEECSSTTTCS
T ss_pred             ----hHHHHHHHHHhcCcccccchhhhcc
Confidence                3334444555555666666554443

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.80  E-value=0.0057  Score=43.39  Aligned_cols=33  Identities=21%  Similarity=0.273  Sum_probs=31.1

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      +++.|||.|.+|-.+|..++.+|.+|+++++.+
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~   54 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD   54 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecc
Confidence            689999999999999999999999999999865

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.79  E-value=0.012  Score=41.40  Aligned_cols=64  Identities=19%  Similarity=0.195  Sum_probs=48.5

Q ss_pred             CCeEEEEcc----------ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCC
Q 026360           36 GKTVGTVGC----------GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        36 g~~vgIIG~----------G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp  101 (240)
                      .|+|||.|+          ..-.-.+.+.|...|++|.+|||.-...+.  ..+.....+++++++.||+|++...
T Consensus        15 ~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~~--~~~~~~~~~l~~~~~~sDiII~~~~   88 (108)
T d1dlja3          15 VKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLES--EDQSVLVNDLENFKKQANIIVTNRY   88 (108)
T ss_dssp             SCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCT--TCCSEECCCHHHHHHHCSEEECSSC
T ss_pred             CCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhHh--ccCCEEEeCHHHHHhhCCEEEEcCC
Confidence            468999995          456778899999999999999996533221  2345566799999999998776543

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=95.77  E-value=0.0076  Score=48.79  Aligned_cols=38  Identities=24%  Similarity=0.354  Sum_probs=34.2

Q ss_pred             cccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        32 ~~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      ++|+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         4 f~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   42 (259)
T d2ae2a_           4 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQ   42 (259)
T ss_dssp             TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4689999999996 5799999999999999999999864

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=95.76  E-value=0.0053  Score=49.75  Aligned_cols=37  Identities=24%  Similarity=0.296  Sum_probs=33.7

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      .|+||++.|.|. +.||+++|+.|...|++|++.|++.
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR   39 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            589999999996 6799999999999999999999864

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=95.74  E-value=0.0062  Score=46.93  Aligned_cols=37  Identities=16%  Similarity=0.217  Sum_probs=34.3

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      ....|+|+|||.|..|-+.|..|+..|++|++|++.+
T Consensus        40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          40 AVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHS   76 (179)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccC
Confidence            4578999999999999999999999999999999865

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.74  E-value=0.0066  Score=48.81  Aligned_cols=38  Identities=21%  Similarity=0.316  Sum_probs=33.7

Q ss_pred             cccCCCeEEEEccC---hHHHHHHHHhccCCCEEEEEcCCC
Q 026360           32 YDLEGKTVGTVGCG---RIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        32 ~~l~g~~vgIIG~G---~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      .+|+||++.|.|.+   .||+++|+.|...|++|++.+++.
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~   44 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE   44 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcH
Confidence            47999999999974   599999999999999998888764

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.0052  Score=49.66  Aligned_cols=38  Identities=18%  Similarity=0.236  Sum_probs=34.5

Q ss_pred             cccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        32 ~~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      ..|+||++.|-|. +.||+++|+.|...|++|++.|++.
T Consensus         2 ~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (250)
T d1ydea1           2 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDE   40 (250)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4689999999995 7899999999999999999999864

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=95.61  E-value=0.0067  Score=45.97  Aligned_cols=91  Identities=22%  Similarity=0.217  Sum_probs=55.5

Q ss_pred             CCeEEEEcc-ChHHHHHHHHhcc-CCCEEE-EEcCCCCCh--h------HHHhcCceecCCHHhhcCcCCEEEEcCCCCh
Q 026360           36 GKTVGTVGC-GRIGKLLLQRLKP-FNCNLL-YHDRVKMDP--Q------LEKETGAKFEEDLDTMLPKCDIVVVNTPLTE  104 (240)
Q Consensus        36 g~~vgIIG~-G~iG~~~A~~l~~-~G~~V~-~~d~~~~~~--~------~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~  104 (240)
                      ..+|+|+|+ |+||+.+++.+.. -++++. ++++...+.  .      .....++....+++++++.+|+|+--.. .+
T Consensus         4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs~-p~   82 (162)
T d1diha1           4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTR-PE   82 (162)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSC-HH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEecc-HH
Confidence            458999995 9999999998865 477754 556532111  0      0112344556788889999999877654 12


Q ss_pred             hhhhcccHHHHccCCCCCEEEEcCCCc
Q 026360          105 KTRGMFDKDRIAKMKKGVLIVNNARGA  131 (240)
Q Consensus       105 ~t~~~i~~~~l~~mk~gailIN~srg~  131 (240)
                      .+...+.  .  ..+.+.-+|--.+|-
T Consensus        83 ~~~~~~~--~--a~~~~~~~ViGTTG~  105 (162)
T d1diha1          83 GTLNHLA--F--CRQHGKGMVIGTTGF  105 (162)
T ss_dssp             HHHHHHH--H--HHHTTCEEEECCCCC
T ss_pred             HHHHHHH--H--HHhccceeEEecCCC
Confidence            2222221  1  134456677667773

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.60  E-value=0.0073  Score=48.97  Aligned_cols=38  Identities=24%  Similarity=0.361  Sum_probs=34.4

Q ss_pred             cccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        32 ~~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      ++|+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         4 F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~   42 (259)
T d1xq1a_           4 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNE   42 (259)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4789999999995 6799999999999999999999864

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.59  E-value=0.0053  Score=44.11  Aligned_cols=32  Identities=13%  Similarity=-0.013  Sum_probs=29.9

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV   68 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~   68 (240)
                      +++.|||.|.||-.+|..++.+|.+|+++.++
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            58999999999999999999999999988765

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.55  E-value=0.0092  Score=48.06  Aligned_cols=38  Identities=21%  Similarity=0.247  Sum_probs=34.2

Q ss_pred             cccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        32 ~~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      +.|.||++.|.|. +.||+++|+.|...|++|++++++.
T Consensus         6 f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~   44 (251)
T d2c07a1           6 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQ   44 (251)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            4689999999996 6899999999999999999999864

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.53  E-value=0.011  Score=41.88  Aligned_cols=36  Identities=17%  Similarity=0.033  Sum_probs=33.0

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      ..++++.|||.|.+|-.+|..|+.+|.+|..+.+.+
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~   55 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTE   55 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccc
Confidence            358999999999999999999999999999998764

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=95.52  E-value=0.015  Score=46.89  Aligned_cols=37  Identities=19%  Similarity=0.198  Sum_probs=33.3

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      .|+||++.|-|. +.||+++|+.|...|++|++.+++.
T Consensus         1 rl~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   38 (258)
T d1iy8a_           1 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSS   38 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            378999999995 5799999999999999999999864

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=95.51  E-value=0.017  Score=46.45  Aligned_cols=45  Identities=18%  Similarity=0.170  Sum_probs=37.1

Q ss_pred             ccCCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh
Q 026360           33 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE   77 (240)
Q Consensus        33 ~l~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~   77 (240)
                      .|+||++.|-| -+.||+++|+.|...|++|++.+++....+..++
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~   47 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEA   47 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            37899999999 5789999999999999999999987644433333

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.51  E-value=0.0089  Score=42.81  Aligned_cols=35  Identities=17%  Similarity=0.144  Sum_probs=32.4

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      .++++.|||.|.+|-.+|..|+..|.+|+.+++.+
T Consensus        29 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~   63 (121)
T d1d7ya2          29 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQP   63 (121)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCeEEEECcchhHHHHHHHhhcccceEEEEeecc
Confidence            36899999999999999999999999999998765

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.0086  Score=43.00  Aligned_cols=33  Identities=18%  Similarity=0.100  Sum_probs=31.2

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      +++.|||.|.+|-.+|..++.+|.+|+++.+..
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecc
Confidence            799999999999999999999999999999864

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.46  E-value=0.009  Score=42.55  Aligned_cols=34  Identities=18%  Similarity=0.272  Sum_probs=31.1

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      .+++.|||.|.||-.+|..++.+|.+|+++.+..
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~   55 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD   55 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEeec
Confidence            4789999999999999999999999999998654

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.44  E-value=0.0079  Score=48.52  Aligned_cols=38  Identities=24%  Similarity=0.378  Sum_probs=34.2

Q ss_pred             cccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        32 ~~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      ++|+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         1 f~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (251)
T d1vl8a_           1 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL   39 (251)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3689999999996 6799999999999999999999864

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=95.44  E-value=0.011  Score=47.80  Aligned_cols=41  Identities=20%  Similarity=0.183  Sum_probs=35.8

Q ss_pred             cccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCCh
Q 026360           32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP   72 (240)
Q Consensus        32 ~~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~   72 (240)
                      .+|+||++.|.|. +.||+++|+.|.+.|++|++.+++....
T Consensus         5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~   46 (260)
T d1h5qa_           5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADA   46 (260)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTH
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence            3689999999996 5699999999999999999999876543

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.012  Score=47.73  Aligned_cols=38  Identities=26%  Similarity=0.361  Sum_probs=34.2

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCC
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM   70 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~   70 (240)
                      .|+||++.|.|. +.||+++|+.|.+.|++|++.+|+..
T Consensus        11 ~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~   49 (269)
T d1xu9a_          11 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKE   49 (269)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            499999999996 56999999999999999999998653

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.42  E-value=0.0071  Score=44.73  Aligned_cols=35  Identities=20%  Similarity=0.221  Sum_probs=31.0

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCC--CEEEEEcCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVK   69 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G--~~V~~~d~~~   69 (240)
                      .||+|.|||.|..|-.+|..|+..|  .+|+++++.+
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            4899999999999999999999877  5789998764

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.39  E-value=0.01  Score=42.48  Aligned_cols=36  Identities=19%  Similarity=0.162  Sum_probs=32.8

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      -.++++.|||.|.+|-.+|..|...|.+|+++++.+
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCCEEEEECChHHHHHHHHHhhccceEEEEEEecC
Confidence            357899999999999999999999999999998754

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=95.37  E-value=0.01  Score=47.53  Aligned_cols=37  Identities=19%  Similarity=0.320  Sum_probs=33.2

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      +|+||++-|-|. +.||+++|+.|...|++|++.+++.
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~   38 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSE   38 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            478999999995 6899999999999999999999864

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.35  E-value=0.0059  Score=45.30  Aligned_cols=88  Identities=13%  Similarity=0.099  Sum_probs=50.6

Q ss_pred             CeEEEEcc-ChHHHHHHHHhccC---CCEEEEEcCCCCChhHHHhcC--ceecCCHHhhcCcCCEEEEcCCCChhhhhcc
Q 026360           37 KTVGTVGC-GRIGKLLLQRLKPF---NCNLLYHDRVKMDPQLEKETG--AKFEEDLDTMLPKCDIVVVNTPLTEKTRGMF  110 (240)
Q Consensus        37 ~~vgIIG~-G~iG~~~A~~l~~~---G~~V~~~d~~~~~~~~~~~~g--~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i  110 (240)
                      ++|||||. |-+|+.+.+.|...   ..++..+..+....+.....+  ........+.+.++|++++++|.. ....+.
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~-~s~~~~   81 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAE-VSRAHA   81 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHH-HHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCcc-hhhhhc
Confidence            68999996 99999999999643   345655543221111111101  111112234567899999999832 222221


Q ss_pred             cHHHHccCCCCCEEEEcCC
Q 026360          111 DKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       111 ~~~~l~~mk~gailIN~sr  129 (240)
                       ..   ..+.|..+||.|.
T Consensus        82 -~~---~~~~g~~VID~Ss   96 (144)
T d2hjsa1          82 -ER---ARAAGCSVIDLSG   96 (144)
T ss_dssp             -HH---HHHTTCEEEETTC
T ss_pred             -cc---cccCCceEEeech
Confidence             12   2467899999874

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=95.35  E-value=0.0063  Score=40.35  Aligned_cols=45  Identities=13%  Similarity=0.221  Sum_probs=38.8

Q ss_pred             CCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcC
Q 026360           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETG   79 (240)
Q Consensus        35 ~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g   79 (240)
                      .|.+|.|.|. |.+|....+.++.+|++|++..+++++.+..+++|
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~lG   76 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLG   76 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHT
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHCC
Confidence            5788999885 99999999999999999999988776777777665

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=95.35  E-value=0.015  Score=46.30  Aligned_cols=38  Identities=18%  Similarity=0.183  Sum_probs=33.4

Q ss_pred             cCCCeEEEEccC---hHHHHHHHHhccCCCEEEEEcCCCCC
Q 026360           34 LEGKTVGTVGCG---RIGKLLLQRLKPFNCNLLYHDRVKMD   71 (240)
Q Consensus        34 l~g~~vgIIG~G---~iG~~~A~~l~~~G~~V~~~d~~~~~   71 (240)
                      |+||++.|.|.+   .||+++|+.|...|++|++.+++...
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~   43 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKL   43 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            799999999975   49999999999999999999986543

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=95.35  E-value=0.0084  Score=46.81  Aligned_cols=35  Identities=23%  Similarity=0.111  Sum_probs=31.8

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      .-++|.|||.|-.|-+.|..|+..|++|+++++..
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            35689999999999999999999999999999753

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.018  Score=46.01  Aligned_cols=37  Identities=24%  Similarity=0.309  Sum_probs=33.9

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      .|+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~   41 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            589999999995 6899999999999999999999864

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.29  E-value=0.0081  Score=48.55  Aligned_cols=38  Identities=21%  Similarity=0.274  Sum_probs=34.1

Q ss_pred             cccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        32 ~~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      ..|+||++-|-|. +.||+++|+.|...|++|++.+++.
T Consensus         7 m~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   45 (255)
T d1fmca_           7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINA   45 (255)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3589999999995 6899999999999999999999864

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=95.27  E-value=0.029  Score=46.62  Aligned_cols=96  Identities=17%  Similarity=0.284  Sum_probs=65.2

Q ss_pred             ccCCCeEEEEcc---ChHHHHHHHHhccCC-CEEEEEcCCCC--Chh---HHHhcC--ceecCCHHhhcCcCCEEEEcCC
Q 026360           33 DLEGKTVGTVGC---GRIGKLLLQRLKPFN-CNLLYHDRVKM--DPQ---LEKETG--AKFEEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        33 ~l~g~~vgIIG~---G~iG~~~A~~l~~~G-~~V~~~d~~~~--~~~---~~~~~g--~~~~~~l~ell~~aDiVvl~lp  101 (240)
                      .+.|++|+++|-   +++..+++..+..+| +++.++.|...  +..   .+++.+  +....++++.++++|+|....-
T Consensus       151 ~l~~~~i~~vGD~~~~~v~~S~~~~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~  230 (310)
T d1tuga1         151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRV  230 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHTTTCCEEEESCGGGTTTTCSEEEECCC
T ss_pred             CcccceEEEEeccccCcchHHHHHHHHhccCceEEEeCCcccccchhcccccccccceeeeeechhhhccCCceeeeccc
Confidence            589999999996   789999999999885 78888877532  111   122233  3456789999999999886432


Q ss_pred             CChh----------hhhcccHHHHccCCCCCEEEEcC
Q 026360          102 LTEK----------TRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       102 ~~~~----------t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      ..+.          ....++.+.++.++++++|..+.
T Consensus       231 ~~e~~~~~~~~~~~~~~~v~~~~l~~a~~~~i~MHcL  267 (310)
T d1tuga1         231 QKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL  267 (310)
T ss_dssp             CGGGSCHHHHHTTTTSSCBCGGGGTTSCSSCEEECCS
T ss_pred             chhhhcccchhhhhhhhhhhHHHHhcCCCCcEEeeCC
Confidence            2110          01235667777777777776653

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=95.25  E-value=0.0082  Score=48.60  Aligned_cols=37  Identities=24%  Similarity=0.299  Sum_probs=33.7

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      +|+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLD   39 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            589999999996 5799999999999999999999864

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=95.22  E-value=0.088  Score=41.58  Aligned_cols=132  Identities=18%  Similarity=0.185  Sum_probs=89.4

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCC---C-----hhH-----HHhcC-ceecCCHHhhcCcCCE
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKM---D-----PQL-----EKETG-AKFEEDLDTMLPKCDI   95 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~---~-----~~~-----~~~~g-~~~~~~l~ell~~aDi   95 (240)
                      +..|++.++.|.|.|..|..+|+.+...|. +++.+|+...   .     ...     ..... .....++.+++..+++
T Consensus        21 g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~  100 (222)
T d1vl6a1          21 EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADF  100 (222)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSE
T ss_pred             CCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhhhcchhhhcchHhhccCcce
Confidence            456899999999999999999999987777 4889997621   1     000     11111 1223578889999998


Q ss_pred             EEEcCCCChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCCCCCCCeEEc
Q 026360           96 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMT  175 (240)
Q Consensus        96 Vvl~lp~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nv~~T  175 (240)
                      +....     +.+++.++.+..|.+..+|.=.|....--|.+  .+-..|+...+.     .-|.++    -+..|+++-
T Consensus       101 ~~g~~-----~~~~~~~e~m~~~~~rPIIFpLSNPt~~~e~~--~a~~~G~ai~At-----Gsp~~p----~Q~NN~yiF  164 (222)
T d1vl6a1         101 FIGVS-----RGNILKPEWIKKMSRKPVIFALANPVPEIDPE--LAREAGAFIVAT-----GRSDHP----NQVNNLLAF  164 (222)
T ss_dssp             EEECS-----CSSCSCHHHHTTSCSSCEEEECCSSSCSSCHH--HHHHTTCSEEEE-----SCTTSS----SBCCGGGTH
T ss_pred             ecccc-----ccccccHHHHhhcCCCCEEEecCCCccchhhh--hheeccceEEec-----CCCCCC----ccCcceeec
Confidence            76655     36788888999999999999999876655543  445567765332     122211    255677776


Q ss_pred             CCC
Q 026360          176 PHV  178 (240)
Q Consensus       176 PH~  178 (240)
                      |=+
T Consensus       165 PGi  167 (222)
T d1vl6a1         165 PGI  167 (222)
T ss_dssp             HHH
T ss_pred             chH
Confidence            644

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.027  Score=45.32  Aligned_cols=38  Identities=16%  Similarity=0.154  Sum_probs=34.2

Q ss_pred             cccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        32 ~~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      ..|+||++.|.|. +.||.++|+.|...|++|++.+++.
T Consensus         6 ~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~   44 (257)
T d1xg5a_           6 ERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTV   44 (257)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3599999999995 6899999999999999999999864

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.21  E-value=0.0071  Score=43.38  Aligned_cols=34  Identities=15%  Similarity=0.142  Sum_probs=31.6

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      .+++.|||.|.+|-.+|..+..+|.+|+++.+.+
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~   58 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFAS   58 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEcc
Confidence            4799999999999999999999999999998765

>d1js1x2 c.78.1.1 (X:164-324) Transcarbamylase-like protein {Bacteroides fragilis [TaxId: 817]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Transcarbamylase-like protein
species: Bacteroides fragilis [TaxId: 817]

Probab=95.18  E-value=0.071  Score=39.96  Aligned_cols=55  Identities=7%  Similarity=0.086  Sum_probs=43.3

Q ss_pred             hHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcC
Q 026360           46 RIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNT  100 (240)
Q Consensus        46 ~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~l  100 (240)
                      ++.++.+..+..+|+++.+..|..-..+.....++....++++.++++|+|+.-.
T Consensus        20 ~Va~S~i~~l~~~G~~v~~~~P~~~~p~~~~~~~~~~~~d~~eav~~aDvI~td~   74 (161)
T d1js1x2          20 AVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKN   74 (161)
T ss_dssp             HHHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEECC
T ss_pred             HHHHHHHHHHHHcCCEEEEECCcccCCCHHHhCCceEecCHHHHhCCCcceeeeh
Confidence            4899999999999999999998654433333345666789999999999998643

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.13  E-value=0.013  Score=47.11  Aligned_cols=37  Identities=16%  Similarity=0.265  Sum_probs=33.7

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      .|+||++.|-|. +.||+++|+.|...|++|++.++++
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~   40 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILD   40 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            489999999996 6799999999999999999999864

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.019  Score=45.14  Aligned_cols=70  Identities=17%  Similarity=0.209  Sum_probs=49.3

Q ss_pred             ccCCCeEEEEc-cChHHHHHHHHhccCCC--EEEEEcCCCCChh--HHHhcC-----ceecCCHHhhcCcCCEEEEcCCC
Q 026360           33 DLEGKTVGTVG-CGRIGKLLLQRLKPFNC--NLLYHDRVKMDPQ--LEKETG-----AKFEEDLDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        33 ~l~g~~vgIIG-~G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~--~~~~~g-----~~~~~~l~ell~~aDiVvl~lp~  102 (240)
                      ...+++|.|.| .|-+|+.+++.|.+.|.  +|++++|++....  ......     ....+++.+.++.+|+++.++..
T Consensus        11 ~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~   90 (232)
T d2bkaa1          11 RMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGT   90 (232)
T ss_dssp             HHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeecccccccccccccccccccccccc
Confidence            45789999999 69999999999987775  7999998653322  112111     11223556778899999888753

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.10  E-value=0.0028  Score=48.87  Aligned_cols=89  Identities=18%  Similarity=0.197  Sum_probs=59.9

Q ss_pred             CCCeEEEEc-cChHHHHHHHHhccCCCE-EEEEcCCCCChh-HHHhcCceec-----CCHHhhcCc-----CCEEEEcCC
Q 026360           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQ-LEKETGAKFE-----EDLDTMLPK-----CDIVVVNTP  101 (240)
Q Consensus        35 ~g~~vgIIG-~G~iG~~~A~~l~~~G~~-V~~~d~~~~~~~-~~~~~g~~~~-----~~l~ell~~-----aDiVvl~lp  101 (240)
                      .+.+|.|.| .|.+|...++.++.+|++ |++.+.+++... ...+.|...+     +++.+.+++     .|+|+-++.
T Consensus        30 ~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vG  109 (187)
T d1vj1a2          30 SNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVG  109 (187)
T ss_dssp             SCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCC
Confidence            357899999 599999999999999986 444554432222 3345665322     344444433     999998885


Q ss_pred             CChhhhhcccHHHHccCCCCCEEEEcCC
Q 026360          102 LTEKTRGMFDKDRIAKMKKGVLIVNNAR  129 (240)
Q Consensus       102 ~~~~t~~~i~~~~l~~mk~gailIN~sr  129 (240)
                        .+    .....++.++++..++.++.
T Consensus       110 --g~----~~~~~~~~l~~~G~iv~~G~  131 (187)
T d1vj1a2         110 --GD----ISNTVISQMNENSHIILCGQ  131 (187)
T ss_dssp             --HH----HHHHHHTTEEEEEEEEEC--
T ss_pred             --ch----hHHHHhhhccccccEEEecc
Confidence              11    23467888999999999873

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.08  E-value=0.016  Score=46.27  Aligned_cols=37  Identities=24%  Similarity=0.258  Sum_probs=33.5

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      .|+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEE   39 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            488999999995 6799999999999999999999864

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.07  E-value=0.017  Score=43.99  Aligned_cols=97  Identities=13%  Similarity=0.172  Sum_probs=57.8

Q ss_pred             CeEEEEc-cChHHHHHHHHhccC-CCEEEEEc-CC--CCChhHHHh-----cC-----ceecCCHHhhcCcCCEEEEcCC
Q 026360           37 KTVGTVG-CGRIGKLLLQRLKPF-NCNLLYHD-RV--KMDPQLEKE-----TG-----AKFEEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        37 ~~vgIIG-~G~iG~~~A~~l~~~-G~~V~~~d-~~--~~~~~~~~~-----~g-----~~~~~~l~ell~~aDiVvl~lp  101 (240)
                      .+|+|+| -|-+|+.+.+.|... .+++.... ..  ....+....     .+     .....+.+....++|++++++|
T Consensus         2 ikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~alp   81 (179)
T d2g17a1           2 LNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLATA   81 (179)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECSC
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeecccc
Confidence            4899999 699999999999886 56665442 11  111111111     01     1122345556788999999999


Q ss_pred             CChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHH
Q 026360          102 LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAV  138 (240)
Q Consensus       102 ~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL  138 (240)
                      ..... . +   .-...+.+..+||.|..--.+....
T Consensus        82 ~~~s~-~-~---~~~~~~~~~~vIDlSadfRl~~~~~  113 (179)
T d2g17a1          82 HEVSH-D-L---APQFLQAGCVVFDLSGAFRVNDRAF  113 (179)
T ss_dssp             HHHHH-H-H---HHHHHHTTCEEEECSSTTSSSCHHH
T ss_pred             chhHH-H-H---hhhhhhcCceeeccccccccccccc
Confidence            32211 1 1   1122457889999997665544443

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.07  E-value=0.025  Score=45.16  Aligned_cols=37  Identities=16%  Similarity=0.261  Sum_probs=33.6

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      +|+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   39 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            589999999995 6799999999999999999999864

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.03  E-value=0.018  Score=46.55  Aligned_cols=39  Identities=23%  Similarity=0.320  Sum_probs=35.0

Q ss_pred             ccccCCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           31 AYDLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        31 ~~~l~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      ..+|+||++.|.| -+.||+++|+.|...|++|++.+++.
T Consensus        13 ~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~   52 (272)
T d1g0oa_          13 SASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANS   52 (272)
T ss_dssp             GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            4579999999999 68999999999999999999988753

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=95.03  E-value=0.015  Score=45.74  Aligned_cols=35  Identities=14%  Similarity=0.107  Sum_probs=32.2

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      ..+||.|||.|..|-.+|..|+..|++|+++++++
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP   37 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            46799999999999999999999999999999754

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=95.03  E-value=0.023  Score=45.49  Aligned_cols=68  Identities=24%  Similarity=0.230  Sum_probs=47.3

Q ss_pred             CCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhH--------HHhcCceec-------CCHHhhcCcCCEEEEc
Q 026360           36 GKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL--------EKETGAKFE-------EDLDTMLPKCDIVVVN   99 (240)
Q Consensus        36 g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~--------~~~~g~~~~-------~~l~ell~~aDiVvl~   99 (240)
                      -+||.|.| .|.||+.+++.|...|++|++.+|++.....        ....+++.+       .++.+.++.++.++.+
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~   82 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA   82 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhh
Confidence            35799999 5999999999999999999999886532211        112233321       2344677888988887


Q ss_pred             CCCC
Q 026360          100 TPLT  103 (240)
Q Consensus       100 lp~~  103 (240)
                      .+..
T Consensus        83 ~~~~   86 (312)
T d1qyda_          83 LAGG   86 (312)
T ss_dssp             CCCS
T ss_pred             hhhc
Confidence            7643

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=95.03  E-value=0.0083  Score=48.23  Aligned_cols=35  Identities=20%  Similarity=0.116  Sum_probs=32.0

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      ..|+|.|||.|..|-+.|..|+..|++|++++..+
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            45799999999999999999999999999999754

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=95.02  E-value=0.0086  Score=48.59  Aligned_cols=38  Identities=32%  Similarity=0.411  Sum_probs=34.1

Q ss_pred             cccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        32 ~~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      ++|+||++-|.|. +.||+++|+.|...|++|++.+++.
T Consensus         3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~   41 (261)
T d1geea_           3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSK   41 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3699999999994 7899999999999999999999864

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.00  E-value=0.015  Score=43.37  Aligned_cols=64  Identities=16%  Similarity=0.148  Sum_probs=42.8

Q ss_pred             CeEEEEcc-ChHHHHHHHHhccCCC-------EEEEEcCCCCChhHHH-------hc------CceecCCHHhhcCcCCE
Q 026360           37 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVKMDPQLEK-------ET------GAKFEEDLDTMLPKCDI   95 (240)
Q Consensus        37 ~~vgIIG~-G~iG~~~A~~l~~~G~-------~V~~~d~~~~~~~~~~-------~~------g~~~~~~l~ell~~aDi   95 (240)
                      .||.|||. |.+|..+|..|...+.       .+..+|.... ...+.       ..      .+....+.++.++++|+
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv   82 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPM-MGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDV   82 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGG-HHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSE
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccc-hhhhhhhhhhhcccccccccccccCcccccccCCceE
Confidence            48999995 9999999998864322       4677776432 11111       11      12234577899999999


Q ss_pred             EEEcCC
Q 026360           96 VVVNTP  101 (240)
Q Consensus        96 Vvl~lp  101 (240)
                      |+++..
T Consensus        83 VVitag   88 (154)
T d5mdha1          83 AILVGS   88 (154)
T ss_dssp             EEECCS
T ss_pred             EEEecc
Confidence            999863

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.013  Score=51.12  Aligned_cols=84  Identities=19%  Similarity=0.194  Sum_probs=57.1

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChh-----------------------HHHhc--C--cee---
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQ-----------------------LEKET--G--AKF---   82 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~-----------------------~~~~~--g--~~~---   82 (240)
                      |++++|.|||+|.+|..+++.|...|. ++.++|.......                       .....  +  +..   
T Consensus        35 l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~  114 (426)
T d1yovb1          35 LDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFN  114 (426)
T ss_dssp             HHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECS
T ss_pred             HhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeec
Confidence            678999999999999999999998888 5889987532211                       00011  1  111   


Q ss_pred             --cCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccC
Q 026360           83 --EEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKM  118 (240)
Q Consensus        83 --~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~m  118 (240)
                        .+..+++++++|+|+.++- +.+++..++...+...
T Consensus       115 ~i~~~~~~~~~~~DlVi~~~D-n~~aR~~in~~c~~l~  151 (426)
T d1yovb1         115 KIQDFNDTFYRQFHIIVCGLD-SIIARRWINGMLISLL  151 (426)
T ss_dssp             CGGGBCHHHHTTCSEEEECCS-CHHHHHHHHHHHHHTC
T ss_pred             cccchHHHHHHhcchheeccC-cHHHHHHHHHHHHHhh
Confidence              1122467899999988875 5567777776665443

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=94.95  E-value=0.073  Score=42.56  Aligned_cols=40  Identities=28%  Similarity=0.164  Sum_probs=33.5

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCCh
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP   72 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~   72 (240)
                      +|+||++-|.|. +.||.++|+.|.+.|++|++.+++....
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~   42 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP   42 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccH
Confidence            589999999996 5799999999999999987776654433

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=94.90  E-value=0.0099  Score=47.57  Aligned_cols=37  Identities=30%  Similarity=0.397  Sum_probs=33.3

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      .|.||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREE   39 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            489999999996 5699999999999999999999864

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.89  E-value=0.015  Score=41.36  Aligned_cols=35  Identities=23%  Similarity=0.175  Sum_probs=32.1

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM   70 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~   70 (240)
                      ++++.|||.|.+|-.+|..|..+|.+|+.+++.+.
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence            57999999999999999999999999999987653

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.88  E-value=0.018  Score=41.71  Aligned_cols=35  Identities=17%  Similarity=0.176  Sum_probs=32.6

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      .++++.|||.|.+|-.+|..|+..|.+|.++++.+
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~   68 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAA   68 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecc
Confidence            47899999999999999999999999999999764

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=94.87  E-value=0.015  Score=47.39  Aligned_cols=37  Identities=22%  Similarity=0.369  Sum_probs=33.9

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      .|+||++.|-|. +.||+++|+.|...|++|++.+++.
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSA   39 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            489999999995 7999999999999999999999864

>d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=94.86  E-value=0.062  Score=41.58  Aligned_cols=96  Identities=9%  Similarity=0.043  Sum_probs=69.0

Q ss_pred             HHHHHhccCCCEEEEEcCCC----CChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEE
Q 026360           50 LLLQRLKPFNCNLLYHDRVK----MDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIV  125 (240)
Q Consensus        50 ~~A~~l~~~G~~V~~~d~~~----~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailI  125 (240)
                      ..++.|.+.|++|++=.--.    -+.+...+.|+...++.+++. ++|+|+..-|.+        .+.++.||+|.++|
T Consensus        21 ~~vkkl~~~G~~V~VE~gaG~~a~fsD~~Y~~aGa~i~~~~~~~~-~~diilkv~~p~--------~~e~~~lk~~~~li   91 (193)
T d1pjca2          21 SSVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAW-SREMVVKVKEPL--------PAEYDLMQKDQLLF   91 (193)
T ss_dssp             HHHHHHHTTTCEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHH-TSSEEECSSCCC--------GGGGGGCCTTCEEE
T ss_pred             HHHHHHHHCCCEEEEEcCcccccCCCHHHHHhhcceeeecccccc-ccceEEEeccCC--------HHHHHhhhcCceEE
Confidence            45677888899998764221    234445566888887878877 589887655422        23577899999998


Q ss_pred             EcCCCcccCHHHHHHHHHhCCccEEEeeCCC
Q 026360          126 NNARGAIMDTQAVVDACSSGHIAGYSGDVWN  156 (240)
Q Consensus       126 N~srg~~vd~~aL~~aL~~g~i~ga~lDV~~  156 (240)
                      ..-..  ....++.++|.+.++...++|..+
T Consensus        92 ~~l~p--~~~~ell~~l~~~~it~~s~E~ip  120 (193)
T d1pjca2          92 TYLHL--AAARELTEQLMRVGLTAIAYETVE  120 (193)
T ss_dssp             ECCCG--GGCHHHHHHHHHHTCEEEEGGGCC
T ss_pred             EecCc--ccchHHHHHHHHcCCEEEEeeecc
Confidence            87653  445789999999999988888653

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.84  E-value=0.0086  Score=44.74  Aligned_cols=90  Identities=22%  Similarity=0.311  Sum_probs=53.1

Q ss_pred             CCeEEEEcc-ChHHHHHHHHhccCCC---EEEEEcCCCCChhHHHh--cCceecCCHHhhcCcCCEEEEcCCCChhhhhc
Q 026360           36 GKTVGTVGC-GRIGKLLLQRLKPFNC---NLLYHDRVKMDPQLEKE--TGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM  109 (240)
Q Consensus        36 g~~vgIIG~-G~iG~~~A~~l~~~G~---~V~~~d~~~~~~~~~~~--~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~  109 (240)
                      |-+|||||. |-+|+.+.+.|....+   ++..+..+.........  .........++...+.|++++++|... +...
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~-s~~~   79 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSST-SAKY   79 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHH-HHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCccc-hhhH
Confidence            458999996 9999999999976643   34444432111110000  011122344566788999999998322 2211


Q ss_pred             ccHHHHccCCCCCEEEEcCCC
Q 026360          110 FDKDRIAKMKKGVLIVNNARG  130 (240)
Q Consensus       110 i~~~~l~~mk~gailIN~srg  130 (240)
                          .....+.|..+||.|.-
T Consensus        80 ----~~~~~~~~~~VIDlSsd   96 (154)
T d2gz1a1          80 ----APYAVKAGVVVVDNTSY   96 (154)
T ss_dssp             ----HHHHHHTTCEEEECSST
T ss_pred             ----HhhhccccceehhcChh
Confidence                22234678999998843

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.84  E-value=0.014  Score=41.18  Aligned_cols=34  Identities=18%  Similarity=0.172  Sum_probs=31.4

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      .+++.|||.|.+|-.+|..++.+|.+|+.+++.+
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~   54 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARE   54 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeec
Confidence            4799999999999999999999999999998754

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.80  E-value=0.014  Score=42.07  Aligned_cols=34  Identities=15%  Similarity=0.112  Sum_probs=31.6

Q ss_pred             CCeEEEEccChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      .+++.|||.|.||-.+|..++.+|.+|+.+.+.+
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~   59 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD   59 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeec
Confidence            4799999999999999999999999999998764

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.78  E-value=0.04  Score=43.50  Aligned_cols=64  Identities=25%  Similarity=0.390  Sum_probs=46.5

Q ss_pred             cCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCcee--c---CCHH---hhcCcCCEEEEcC
Q 026360           34 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKF--E---EDLD---TMLPKCDIVVVNT  100 (240)
Q Consensus        34 l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~--~---~~l~---ell~~aDiVvl~l  100 (240)
                      |+||++.|.|. +.||+++|+.|...|++|++.+++.   +..++.+.+.  +   ...+   +-+.+-|+++...
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~---~~l~~~~~~~~~~Dv~~~~~~~~~~~g~iD~lVnnA   74 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE---ELLKRSGHRYVVCDLRKDLDLLFEKVKEVDILVLNA   74 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH---HHHHHTCSEEEECCTTTCHHHHHHHSCCCSEEEECC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH---HHHHhcCCcEEEcchHHHHHHHHHHhCCCcEEEecc
Confidence            78999999996 6799999999999999999999853   3334443321  1   1222   3456788888765

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.77  E-value=0.015  Score=46.78  Aligned_cols=37  Identities=22%  Similarity=0.221  Sum_probs=33.7

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      .|+||++-|.|. +.||+++|+.|...|++|++.+++.
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYVREGARVAIADINL   39 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            489999999996 7899999999999999999999864

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.76  E-value=0.016  Score=48.04  Aligned_cols=36  Identities=19%  Similarity=0.229  Sum_probs=32.7

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM   70 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~   70 (240)
                      +.|+|.|||.|.-|-.+|..|+..|.+|++++.+..
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            368999999999999999999999999999997653

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=94.69  E-value=0.039  Score=44.06  Aligned_cols=37  Identities=22%  Similarity=0.286  Sum_probs=33.7

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      .|+||++.|.|. +.||+++|+.|...|++|++.++++
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~   39 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVP   39 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            589999999996 6799999999999999999999865

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=94.65  E-value=0.02  Score=41.28  Aligned_cols=63  Identities=21%  Similarity=0.223  Sum_probs=39.0

Q ss_pred             eEEEEccChHHHHHHHHhc-cCCCEEEEE-cCCCCChhHHHhcCce--ecCCHHhhcC-cCCEEEEcCC
Q 026360           38 TVGTVGCGRIGKLLLQRLK-PFNCNLLYH-DRVKMDPQLEKETGAK--FEEDLDTMLP-KCDIVVVNTP  101 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~-~~G~~V~~~-d~~~~~~~~~~~~g~~--~~~~l~ell~-~aDiVvl~lp  101 (240)
                      ++.|+|+|.+|+.+++.+. ..|++++++ |.++...... -.|+.  ..+.++++.+ ..++.++++|
T Consensus         5 ~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~-I~Gi~V~~~~~l~~~~~~~i~iai~~i~   72 (126)
T d2dt5a2           5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRP-VRGGVIEHVDLLPQRVPGRIEIALLTVP   72 (126)
T ss_dssp             EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCE-ETTEEEEEGGGHHHHSTTTCCEEEECSC
T ss_pred             eEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCE-ECCEEEecHHHHHHHHhhcccEEEEeCC
Confidence            7899999999999998775 457886654 6554322111 11333  2345555443 3566677777

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=94.58  E-value=0.014  Score=45.80  Aligned_cols=33  Identities=18%  Similarity=0.253  Sum_probs=30.5

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      ++|.|||.|..|-..|..|+..|++|++++.++
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            579999999999999999999999999998754

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.57  E-value=0.03  Score=46.57  Aligned_cols=66  Identities=20%  Similarity=0.133  Sum_probs=44.8

Q ss_pred             CCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCc--ee-----cCCHHhhcCcCCEEEEcC
Q 026360           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGA--KF-----EEDLDTMLPKCDIVVVNT  100 (240)
Q Consensus        35 ~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~--~~-----~~~l~ell~~aDiVvl~l  100 (240)
                      .+++|.|.| .|-||+.+++.|.+.|++|+++|+.............  ..     ...+.++++..|.|+-+.
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a   87 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLA   87 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhhcCCeEeecc
Confidence            689999999 7999999999999999999999865422111111111  11     123345567899877654

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=94.56  E-value=0.0081  Score=48.08  Aligned_cols=38  Identities=29%  Similarity=0.204  Sum_probs=33.8

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCC
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK   69 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~   69 (240)
                      ..|++++|.|+|+|.+|..+|..|...|. +++.+|...
T Consensus        26 ~kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          26 EALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             HHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HHHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            35899999999999999999999999998 588888653

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=94.56  E-value=0.016  Score=47.96  Aligned_cols=37  Identities=22%  Similarity=0.158  Sum_probs=33.6

Q ss_pred             cCCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 026360           34 LEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKM   70 (240)
Q Consensus        34 l~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~   70 (240)
                      .+||+|.|.| .|-||+.+++.|...|++|.++++...
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            4699999999 689999999999999999999998654

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=94.53  E-value=0.028  Score=44.54  Aligned_cols=35  Identities=14%  Similarity=0.171  Sum_probs=31.3

Q ss_pred             CCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCC
Q 026360           36 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM   70 (240)
Q Consensus        36 g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~   70 (240)
                      -|||.|.|. |.+|+.+++.|...|++|++++|.+.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~   38 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   38 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            478999995 99999999999999999999998654

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=94.51  E-value=0.089  Score=39.91  Aligned_cols=103  Identities=15%  Similarity=0.170  Sum_probs=61.6

Q ss_pred             CCeEEEEcc-ChHHHHHHHHhcc---CCC----EEEEEcCCCCCh--h-HH---Hhc------CceecCCHHhhcCcCCE
Q 026360           36 GKTVGTVGC-GRIGKLLLQRLKP---FNC----NLLYHDRVKMDP--Q-LE---KET------GAKFEEDLDTMLPKCDI   95 (240)
Q Consensus        36 g~~vgIIG~-G~iG~~~A~~l~~---~G~----~V~~~d~~~~~~--~-~~---~~~------g~~~~~~l~ell~~aDi   95 (240)
                      -.+|.|+|. |.||..++..|..   ||.    .+..+|......  + ..   ...      .+...++..+.++++|+
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aDv  103 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDW  103 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCce
Confidence            458999996 9999999998875   443    466677643211  1 01   111      12334688899999999


Q ss_pred             EEEcCCCC--h-h--------hhhccc--HHHHcc-CCCCCEEEEcCCCcccCHHHHHH
Q 026360           96 VVVNTPLT--E-K--------TRGMFD--KDRIAK-MKKGVLIVNNARGAIMDTQAVVD  140 (240)
Q Consensus        96 Vvl~lp~~--~-~--------t~~~i~--~~~l~~-mk~gailIN~srg~~vd~~aL~~  140 (240)
                      |++.....  + .        +..++-  .+.+.. .+++++++=++.  .+|..+++.
T Consensus       104 Vvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N--Pvd~~t~ia  160 (175)
T d7mdha1         104 ALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN--PCNTNALIC  160 (175)
T ss_dssp             EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHHHH
T ss_pred             EEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC--cHHHHHHHH
Confidence            99986322  1 1        111111  122333 466777777764  577777653

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.51  E-value=0.023  Score=45.11  Aligned_cols=57  Identities=18%  Similarity=0.282  Sum_probs=41.1

Q ss_pred             CeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcC--cCCEEEEcCC
Q 026360           37 KTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLP--KCDIVVVNTP  101 (240)
Q Consensus        37 ~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~--~aDiVvl~lp  101 (240)
                      ++|.|.|. |-||+.+++.|...|++|++.|++..+.        ....+++++++  ..|+|+-+.-
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~D~--------~d~~~~~~~l~~~~~d~vih~a~   61 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDI--------TNVLAVNKFFNEKKPNVVINCAA   61 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCT--------TCHHHHHHHHHHHCCSEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechhccC--------CCHHHHHHHHHHcCCCEEEeecc
Confidence            57999996 9999999999999999999999864221        11123445554  4587766543

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.50  E-value=0.018  Score=47.60  Aligned_cols=38  Identities=16%  Similarity=0.269  Sum_probs=33.9

Q ss_pred             cccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        32 ~~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      .+|+||++.|-|. +.||+++|+.|...|++|++.|++.
T Consensus         3 m~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~   41 (302)
T d1gz6a_           3 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGG   41 (302)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCB
T ss_pred             cCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            3689999999995 6799999999999999999998754

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=94.49  E-value=0.023  Score=47.17  Aligned_cols=66  Identities=14%  Similarity=0.071  Sum_probs=45.8

Q ss_pred             CCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh-----c----------CceecCCHHhhcCcCCEEEE
Q 026360           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE-----T----------GAKFEEDLDTMLPKCDIVVV   98 (240)
Q Consensus        35 ~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~-----~----------g~~~~~~l~ell~~aDiVvl   98 (240)
                      .||+|.|.| .|-||+.+++.|...|++|++..|+..+......     .          .+....++++++..+|+|+.
T Consensus        10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~~   89 (342)
T d1y1pa1          10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAH   89 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEE
T ss_pred             CcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhhh
Confidence            599999999 5889999999999999999988775322221110     0          11112345678889998876


Q ss_pred             cC
Q 026360           99 NT  100 (240)
Q Consensus        99 ~l  100 (240)
                      +.
T Consensus        90 ~a   91 (342)
T d1y1pa1          90 IA   91 (342)
T ss_dssp             CC
T ss_pred             hc
Confidence            54

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=94.33  E-value=0.035  Score=45.97  Aligned_cols=69  Identities=19%  Similarity=0.256  Sum_probs=48.9

Q ss_pred             CCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCCChhHH--Hh-cCceec----CC----HHhhcCcCCEEEEcCCC
Q 026360           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLE--KE-TGAKFE----ED----LDTMLPKCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~--~~-~g~~~~----~~----l~ell~~aDiVvl~lp~  102 (240)
                      +-|+|.|+| .|.||+.+++.|.+.|++|.+..|++.+....  .. .+++.+    .+    ++.++..+|.++...+.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~~   81 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS   81 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeeccc
Confidence            358999999 59999999999999999999998876443221  11 243311    12    44677889988877664


Q ss_pred             C
Q 026360          103 T  103 (240)
Q Consensus       103 ~  103 (240)
                      .
T Consensus        82 ~   82 (350)
T d1xgka_          82 Q   82 (350)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.23  E-value=0.027  Score=44.23  Aligned_cols=36  Identities=19%  Similarity=0.174  Sum_probs=33.5

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      -.+++|.|||.|..|-..|..|+..|++|++++...
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~   82 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAE   82 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeecc
Confidence            478999999999999999999999999999999765

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=94.23  E-value=0.00019  Score=52.35  Aligned_cols=23  Identities=13%  Similarity=0.104  Sum_probs=20.8

Q ss_pred             CeEEEEccChHHHHHHHHhccCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFN   59 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G   59 (240)
                      ++++|+|+|+||+.+|+++++||
T Consensus        99 r~l~i~G~G~iG~~iA~r~~a~G  121 (121)
T d1qp8a2          99 RNLITYATGGRPRNIAKREDYIG  121 (121)
T ss_dssp             HHHHHHHTTSCCSCBCCGGGTC-
T ss_pred             CCEEEEcCCHHHHHHHHHHHhcC
Confidence            47899999999999999999987

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.21  E-value=0.026  Score=45.27  Aligned_cols=33  Identities=27%  Similarity=0.268  Sum_probs=27.4

Q ss_pred             CeEE-EEcc-ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           37 KTVG-TVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        37 ~~vg-IIG~-G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      |||. |-|. +.||+++|+.|...|++|++.+++.
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~   35 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYND   35 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4664 4474 6799999999999999999999864

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.18  E-value=0.054  Score=44.49  Aligned_cols=37  Identities=24%  Similarity=0.346  Sum_probs=33.8

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      .|+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~   46 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKL   46 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            599999999995 6799999999999999999999864

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=94.17  E-value=0.098  Score=42.05  Aligned_cols=81  Identities=21%  Similarity=0.254  Sum_probs=55.9

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCceecCCHHhhcCcCCEEEEcCCCChhhhhcccHH
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKD  113 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDiVvl~lp~~~~t~~~i~~~  113 (240)
                      ..|++|++||+-    ...+.++..|+++.++++++..       |.......++++.+||+|+++-.  .-..+-+ ..
T Consensus       120 ~~g~kV~vIG~~----P~v~~l~~~~~~~~VlE~~p~~-------gd~p~~~~~~lLp~aD~viiTGs--TlvN~Tl-~~  185 (251)
T d2h1qa1         120 VKGKKVGVVGHF----PHLESLLEPICDLSILEWSPEE-------GDYPLPASEFILPECDYVYITCA--SVVDKTL-PR  185 (251)
T ss_dssp             TTTSEEEEESCC----TTHHHHHTTTSEEEEEESSCCT-------TCEEGGGHHHHGGGCSEEEEETH--HHHHTCH-HH
T ss_pred             cCCCEEEEEecc----hhHHHHHhcCCcEEEEeCCCCC-------CCCCchHHHHhhhcCCEEEEEec--hhhcCCH-HH
Confidence            479999999985    3555667788999999987632       22333456789999999998752  1111222 35


Q ss_pred             HHccCCCCCEEEEcC
Q 026360          114 RIAKMKKGVLIVNNA  128 (240)
Q Consensus       114 ~l~~mk~gailIN~s  128 (240)
                      .++..|+...+|=+|
T Consensus       186 LL~~~~~a~~vvl~G  200 (251)
T d2h1qa1         186 LLELSRNARRITLVG  200 (251)
T ss_dssp             HHHHTTTSSEEEEES
T ss_pred             HHHhCCcCCEEEEEC
Confidence            777788877776665

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=94.08  E-value=0.016  Score=43.23  Aligned_cols=99  Identities=20%  Similarity=0.231  Sum_probs=55.7

Q ss_pred             CeEEEEcc-ChHHHHHHHHhccCCC-------EEEEEcCCCCChhHHH------hc-------CceecCCHHhhcCcCCE
Q 026360           37 KTVGTVGC-GRIGKLLLQRLKPFNC-------NLLYHDRVKMDPQLEK------ET-------GAKFEEDLDTMLPKCDI   95 (240)
Q Consensus        37 ~~vgIIG~-G~iG~~~A~~l~~~G~-------~V~~~d~~~~~~~~~~------~~-------g~~~~~~l~ell~~aDi   95 (240)
                      .+|.|+|. |.+|+.+|..|...+.       ....++... ..+...      ..       ++....+..+.+++||+
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~adv   83 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQ-AMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADY   83 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGG-GHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhcccc-chhhHcCchhhhhccccccccccccCCchhhhcccccE
Confidence            48999996 9999999999876432       123333321 111111      00       12234577889999999


Q ss_pred             EEEcCCCC--hh-hh--------hcc---cHHHHccCCCCCEEEEcCCCcccCHHHH
Q 026360           96 VVVNTPLT--EK-TR--------GMF---DKDRIAKMKKGVLIVNNARGAIMDTQAV  138 (240)
Q Consensus        96 Vvl~lp~~--~~-t~--------~~i---~~~~l~~mk~gailIN~srg~~vd~~aL  138 (240)
                      |+++.-..  |. ++        .++   ..+.-+..+++++++.++.  .+|.-..
T Consensus        84 ViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN--PvDv~t~  138 (154)
T d1y7ta1          84 ALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN--PANTNAL  138 (154)
T ss_dssp             EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHH
T ss_pred             EEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC--cHHHHHH
Confidence            99987322  11 11        111   1122222456788888763  4555443

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=93.97  E-value=0.027  Score=44.95  Aligned_cols=37  Identities=16%  Similarity=0.142  Sum_probs=32.7

Q ss_pred             ccCCCeEEEEcc-Ch--HHHHHHHHhccCCCEEEEEcCCC
Q 026360           33 DLEGKTVGTVGC-GR--IGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~--iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      -|+||++.|.|. |.  ||.++|+.|...|++|++.+++.
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~   42 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   42 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence            389999999996 54  99999999999999999988764

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=93.95  E-value=0.037  Score=46.22  Aligned_cols=33  Identities=21%  Similarity=0.124  Sum_probs=28.0

Q ss_pred             CeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        37 ~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      |++.|.| .|-||+.+++.|...|++|+++|+..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            5666888 79999999999999999999999853

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.95  E-value=0.017  Score=46.81  Aligned_cols=38  Identities=21%  Similarity=0.190  Sum_probs=34.2

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCC
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM   70 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~   70 (240)
                      +|+||++.|.|. +.||+++|+.|...|++|++.+++..
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~   40 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSE   40 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            489999999995 68999999999999999999998753

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=93.83  E-value=0.028  Score=45.52  Aligned_cols=37  Identities=24%  Similarity=0.272  Sum_probs=33.3

Q ss_pred             cccCCCeEEEEccC---hHHHHHHHHhccCCCEEEEEcCC
Q 026360           32 YDLEGKTVGTVGCG---RIGKLLLQRLKPFNCNLLYHDRV   68 (240)
Q Consensus        32 ~~l~g~~vgIIG~G---~iG~~~A~~l~~~G~~V~~~d~~   68 (240)
                      .+|+||++.|.|.+   .||+++|+.|...|++|++.+++
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~   43 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV   43 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            47999999999986   59999999999999999888764

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.77  E-value=0.089  Score=41.90  Aligned_cols=36  Identities=19%  Similarity=0.212  Sum_probs=32.3

Q ss_pred             cCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           34 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        34 l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      +.||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~   37 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNL   37 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            46999999996 6799999999999999999999864

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=93.43  E-value=0.031  Score=45.13  Aligned_cols=37  Identities=19%  Similarity=0.293  Sum_probs=33.6

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      .|+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIAD   40 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            489999999995 6799999999999999999999864

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.41  E-value=0.022  Score=45.49  Aligned_cols=37  Identities=16%  Similarity=0.188  Sum_probs=33.6

Q ss_pred             ccCCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           33 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        33 ~l~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      .|+||++.|.| -+.||+++|+.|...|++|++.++++
T Consensus         3 ~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~   40 (245)
T d2ag5a1           3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINE   40 (245)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            38999999988 57999999999999999999999875

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.41  E-value=0.06  Score=43.94  Aligned_cols=63  Identities=13%  Similarity=0.085  Sum_probs=41.7

Q ss_pred             CeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCC-ChhHHHh-c-----CceecCCHHhhcCcCCEEEEc
Q 026360           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKM-DPQLEKE-T-----GAKFEEDLDTMLPKCDIVVVN   99 (240)
Q Consensus        37 ~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~-~~~~~~~-~-----g~~~~~~l~ell~~aDiVvl~   99 (240)
                      |+|.|.| .|-||+.+++.|...|++|+++|+... ..+.... .     .....+.++.+..++|+|+-+
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~Vihl   72 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHL   72 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHHhcCCCceEEEehHHHHHHHcCCCEEEEC
Confidence            7899999 699999999999999999999986322 2221111 1     111123345566789987644

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=93.41  E-value=0.031  Score=42.40  Aligned_cols=32  Identities=28%  Similarity=0.307  Sum_probs=29.1

Q ss_pred             eEEEEccChHHHHHHHHhccCCC-EEEEEcCCC
Q 026360           38 TVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK   69 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~   69 (240)
                      +|.|||.|..|-+.|..|+..|+ +|++++++.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            68999999999999999999997 599999754

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.40  E-value=0.042  Score=43.63  Aligned_cols=40  Identities=23%  Similarity=0.219  Sum_probs=35.2

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCCCh
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKMDP   72 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~~~   72 (240)
                      .|.||++.|.|. +.||+++|+.|...|++|++.+++....
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~   44 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP   44 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh
Confidence            589999999996 5799999999999999999999876443

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.37  E-value=0.041  Score=38.11  Aligned_cols=38  Identities=21%  Similarity=0.293  Sum_probs=32.0

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCC
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV   68 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~   68 (240)
                      ..+.+||+|+|||.|.-|..+|.-|...+-+++...++
T Consensus        27 ~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r   64 (107)
T d2gv8a2          27 PELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLL   64 (107)
T ss_dssp             GGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECT
T ss_pred             hhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEec
Confidence            45689999999999999999999998887776655544

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.35  E-value=0.047  Score=43.07  Aligned_cols=35  Identities=17%  Similarity=0.265  Sum_probs=31.5

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      +-++|.|||.|.-|-..|..|+..|++|+++..+.
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            35679999999999999999999999999998654

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.32  E-value=0.025  Score=45.87  Aligned_cols=37  Identities=19%  Similarity=0.222  Sum_probs=33.5

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      .|+||++-|-|. +.||+++|+.|...|++|++.+++.
T Consensus         1 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   38 (274)
T d1xhla_           1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNE   38 (274)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            378999999995 6799999999999999999999865

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=93.18  E-value=0.028  Score=45.09  Aligned_cols=37  Identities=19%  Similarity=0.250  Sum_probs=33.6

Q ss_pred             ccCCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           33 DLEGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        33 ~l~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      .|+||++.|.| .+.||+++|+.|...|++|++.+++.
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   40 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHS   40 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            48999999999 57799999999999999999999865

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.09  E-value=0.03  Score=45.25  Aligned_cols=36  Identities=25%  Similarity=0.345  Sum_probs=30.4

Q ss_pred             CCCeEEEE--ccChHHHHHHHHhcc-CCCEEEEEcCCCC
Q 026360           35 EGKTVGTV--GCGRIGKLLLQRLKP-FNCNLLYHDRVKM   70 (240)
Q Consensus        35 ~g~~vgII--G~G~iG~~~A~~l~~-~G~~V~~~d~~~~   70 (240)
                      +||+|+||  |-+.||.++|+.|.. .|++|+.++|+..
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~   39 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVT   39 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            48999887  578999999999875 5999999998653

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.99  E-value=0.027  Score=43.00  Aligned_cols=64  Identities=20%  Similarity=0.194  Sum_probs=41.5

Q ss_pred             CeEEEEc-cChHHHHHHHHhccCCCE--EEEEcCCCCChhHHHhcCce-------ecCCHHhhcCcCCEEEEcCC
Q 026360           37 KTVGTVG-CGRIGKLLLQRLKPFNCN--LLYHDRVKMDPQLEKETGAK-------FEEDLDTMLPKCDIVVVNTP  101 (240)
Q Consensus        37 ~~vgIIG-~G~iG~~~A~~l~~~G~~--V~~~d~~~~~~~~~~~~g~~-------~~~~l~ell~~aDiVvl~lp  101 (240)
                      +||.|.| .|.||+.+++.|...|++  |+...|++...... ..+++       ...++.++++.+|.|+.+..
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~   77 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI-GGEADVFIGDITDADSINPAFQGIDALVILTS   77 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHT-TCCTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhc-cCCcEEEEeeeccccccccccccceeeEEEEe
Confidence            6899999 699999999999988865  44455543221111 11221       11234567888999887754

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=92.97  E-value=0.069  Score=42.66  Aligned_cols=34  Identities=18%  Similarity=0.184  Sum_probs=29.3

Q ss_pred             CCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           36 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        36 g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      ||.+.|-|. +.||+++|+.|...|++|++.+++.
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~   36 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGE   36 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            677777785 6799999999999999999999864

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=92.97  E-value=0.031  Score=44.86  Aligned_cols=37  Identities=19%  Similarity=0.249  Sum_probs=33.5

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      .|+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~   40 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINE   40 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            489999999995 6799999999999999999999865

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.86  E-value=0.032  Score=44.89  Aligned_cols=38  Identities=13%  Similarity=0.086  Sum_probs=34.0

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCC
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM   70 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~   70 (240)
                      .|+||++.|.|. +.||+++|+.|...|++|++.+++..
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAE   40 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            489999999995 79999999999999999999998653

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.80  E-value=0.061  Score=41.64  Aligned_cols=34  Identities=18%  Similarity=0.182  Sum_probs=29.2

Q ss_pred             CeEEEEccChHHHHHHHHhcc--CCCEEEEEcCCCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKP--FNCNLLYHDRVKM   70 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~--~G~~V~~~d~~~~   70 (240)
                      .+|+|||.|..|-+.|..|+.  +|++|++|++.+.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            389999999999999998854  6889999997653

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.70  E-value=0.033  Score=44.59  Aligned_cols=32  Identities=28%  Similarity=0.329  Sum_probs=30.0

Q ss_pred             eEEEEccChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      +|.|||.|..|..+|..|+..|.+|.++++.+
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            69999999999999999999999999999864

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.62  E-value=0.075  Score=45.78  Aligned_cols=91  Identities=21%  Similarity=0.383  Sum_probs=59.5

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHh----c-------Cc-------e----e--cCCHHhh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKE----T-------GA-------K----F--EEDLDTM   89 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~----~-------g~-------~----~--~~~l~el   89 (240)
                      .|.++.=+|+|. |..+...++.+|+ +|+++|.++...+.++.    .       +.       .    .  ....++.
T Consensus       216 pgd~fLDLGCG~-G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~  294 (406)
T d1u2za_         216 KGDTFMDLGSGV-GNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAEL  294 (406)
T ss_dssp             TTCEEEEESCTT-SHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHH
T ss_pred             CCCEEEeCCCCC-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccccccc
Confidence            578999999975 7777777777776 79999987543332221    0       00       0    0  1224567


Q ss_pred             cCcCCEEEEcC-CCChhhhhcccHHHHccCCCCCEEEEc
Q 026360           90 LPKCDIVVVNT-PLTEKTRGMFDKDRIAKMKKGVLIVNN  127 (240)
Q Consensus        90 l~~aDiVvl~l-p~~~~t~~~i~~~~l~~mk~gailIN~  127 (240)
                      +..+|+|++.. -..++....+ .+.+..||||+.||..
T Consensus       295 ~~~adVV~inn~~f~~~l~~~L-~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         295 IPQCDVILVNNFLFDEDLNKKV-EKILQTAKVGCKIISL  332 (406)
T ss_dssp             GGGCSEEEECCTTCCHHHHHHH-HHHHTTCCTTCEEEES
T ss_pred             cccceEEEEecccCchHHHHHH-HHHHHhcCCCcEEEEe
Confidence            88899998753 2334444444 4788899999998864

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=92.46  E-value=0.065  Score=44.09  Aligned_cols=33  Identities=15%  Similarity=0.263  Sum_probs=28.6

Q ss_pred             CeEEEEccChHHHHHHHHhccCC--CEEEEEcCCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFN--CNLLYHDRVK   69 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G--~~V~~~d~~~   69 (240)
                      |+|+|||.|.-|-.+|..|+..|  .+|++++++.
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            78999999999999999886554  6999999864

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=92.35  E-value=0.075  Score=43.68  Aligned_cols=32  Identities=22%  Similarity=0.248  Sum_probs=28.9

Q ss_pred             CeEEEEc-cChHHHHHHHHhccCCCEEEEEcCC
Q 026360           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRV   68 (240)
Q Consensus        37 ~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~   68 (240)
                      |+|.|+| .|-||+.+++.|...|++|+++|+.
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~   33 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNL   33 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            5789999 6999999999999999999999863

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=92.26  E-value=0.056  Score=42.68  Aligned_cols=32  Identities=22%  Similarity=0.177  Sum_probs=29.6

Q ss_pred             eEEEEccChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      -|.|||.|-+|.++|..|...|.+|+++++..
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            38999999999999999999999999999854

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.26  E-value=0.06  Score=40.53  Aligned_cols=31  Identities=23%  Similarity=0.134  Sum_probs=29.2

Q ss_pred             EEEEccChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        39 vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      |.|||.|..|...|..|...|.+|++++++.
T Consensus         8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            7899999999999999999999999999864

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.21  E-value=0.095  Score=41.17  Aligned_cols=35  Identities=26%  Similarity=0.283  Sum_probs=31.5

Q ss_pred             CCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           35 EGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        35 ~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      +||+|.|.|. |.||+++|+.|.+.|++|...|+..
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~   36 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVE   36 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4899999996 7799999999999999999998754

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=92.18  E-value=0.073  Score=42.52  Aligned_cols=36  Identities=22%  Similarity=0.222  Sum_probs=31.3

Q ss_pred             cccCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcC
Q 026360           32 YDLEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDR   67 (240)
Q Consensus        32 ~~l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~   67 (240)
                      +.|.||++.|.|. +.||+++|+.|...|++|++.++
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~   38 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYG   38 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcC
Confidence            3589999999995 67999999999999999987554

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.09  E-value=0.078  Score=41.42  Aligned_cols=33  Identities=12%  Similarity=0.031  Sum_probs=29.9

Q ss_pred             CeEEEEccChHHHHHHHHhccCCC-EEEEEcCCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK   69 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~   69 (240)
                      .+|.|||.|..|..+|..|+..|. +|.++++.+
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            479999999999999999999996 899999765

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.74  E-value=0.066  Score=40.92  Aligned_cols=64  Identities=19%  Similarity=0.140  Sum_probs=40.7

Q ss_pred             CeEEEEcc-ChHHHHHHHHhccCCC--EEEEEcCCCCChhHHHhcCceecCCHH----hhcCcCCEEEEcCCCC
Q 026360           37 KTVGTVGC-GRIGKLLLQRLKPFNC--NLLYHDRVKMDPQLEKETGAKFEEDLD----TMLPKCDIVVVNTPLT  103 (240)
Q Consensus        37 ~~vgIIG~-G~iG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~g~~~~~~l~----ell~~aDiVvl~lp~~  103 (240)
                      |+|.|.|. |-+|+.+++.|.+.|.  +|+...|++....  ..... ...++.    .+....|.|+.|+..+
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~--~~~~~-~~~d~~~~~~~~~~~~d~vi~~~g~~   73 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEH--PRLDN-PVGPLAELLPQLDGSIDTAFCCLGTT   73 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCC--TTEEC-CBSCHHHHGGGCCSCCSEEEECCCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhc--ccccc-cccchhhhhhccccchheeeeeeeee
Confidence            79999996 9999999999998887  5666666542211  11111 112332    3344579998886443

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=91.74  E-value=0.067  Score=39.57  Aligned_cols=31  Identities=19%  Similarity=0.111  Sum_probs=27.1

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEE
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYH   65 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~   65 (240)
                      ++++|.|||-|.+|-.+|..|+.+|.+|.++
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~   32 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIR   32 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEE
Confidence            4789999999999999999999999875444

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=91.70  E-value=0.06  Score=40.71  Aligned_cols=104  Identities=17%  Similarity=0.197  Sum_probs=55.2

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhc-Cceec-CCH-HhhcCcCCEEEEcCCCChhhhhcccH-
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKET-GAKFE-EDL-DTMLPKCDIVVVNTPLTEKTRGMFDK-  112 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~-g~~~~-~~l-~ell~~aDiVvl~lp~~~~t~~~i~~-  112 (240)
                      .+|||=|+|+||+.+.+.+...+.+|.+.+... ..+...-+ .+..+ ..+ .++-...|.+++--    ..-.+... 
T Consensus         1 ikigINGfGRIGR~~~R~l~~~~i~iv~INd~~-~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g----~~I~~~~~~   75 (168)
T d2g82a1           1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLT-DNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDG----KAIRATAVK   75 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS-CHHHHHHHHHCCTTTCSCSSCEEECSSEEEETT----EEEEEECCS
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEECCCc-chhhhhheeecccccCccccccccccceeEecc----eeEEEEecC
Confidence            479999999999999998887788988776432 33322211 11000 001 11222334444311    11111111 


Q ss_pred             --HHHccCCCCCEEEEcCCCcccCHHHHHHHHHhC
Q 026360          113 --DRIAKMKKGVLIVNNARGAIMDTQAVVDACSSG  145 (240)
Q Consensus       113 --~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g  145 (240)
                        +.+.--+-|.-+|=-+.|.-.+.+.+...|+.|
T Consensus        76 ~p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~g  110 (168)
T d2g82a1          76 DPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGG  110 (168)
T ss_dssp             SGGGCCTGGGTEEEEEECSSSCCBHHHHTHHHHTT
T ss_pred             ChHHCcccccCCceeEeccccccchHHhhhhhccc
Confidence              112111224444445578888888888888765

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=91.48  E-value=0.09  Score=42.00  Aligned_cols=36  Identities=19%  Similarity=0.255  Sum_probs=32.3

Q ss_pred             cCCCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           34 LEGKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        34 l~g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      |+||++.|.|. +.||+++|+.|...|++|++.+++.
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            68999999885 5699999999999999999999864

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=91.39  E-value=0.1  Score=39.49  Aligned_cols=31  Identities=26%  Similarity=0.527  Sum_probs=26.7

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDR   67 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~   67 (240)
                      .||||=|+|+||+.+.+.+...+.+|.+.+.
T Consensus         1 ~kIgINGfGRIGR~~~R~~~~~~~~ivaINd   31 (169)
T d1dssg1           1 SKIGINGFGRIGRLVLRAALEMGAQVVAVND   31 (169)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEECC
Confidence            3799999999999999998877888877764

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=91.37  E-value=0.1  Score=36.35  Aligned_cols=34  Identities=18%  Similarity=0.016  Sum_probs=28.5

Q ss_pred             CCeEEEEccChHHHHHHHHhc---cCCCEEEEEcCCC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLK---PFNCNLLYHDRVK   69 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~---~~G~~V~~~d~~~   69 (240)
                      .+++.|||.|.+|-.+|..+.   ..|.+|..+.+.+
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceecccc
Confidence            479999999999999997654   4589999998754

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=91.37  E-value=0.21  Score=36.31  Aligned_cols=40  Identities=15%  Similarity=0.082  Sum_probs=33.4

Q ss_pred             cccCCCeEEEE--ccChHHHHHHHHhccCCCEEEEEcCCCCC
Q 026360           32 YDLEGKTVGTV--GCGRIGKLLLQRLKPFNCNLLYHDRVKMD   71 (240)
Q Consensus        32 ~~l~g~~vgII--G~G~iG~~~A~~l~~~G~~V~~~d~~~~~   71 (240)
                      ...-++.+.|+  |.|.||-.+|..|..+|.+|+++.+.+..
T Consensus        35 ~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~   76 (156)
T d1djqa2          35 KKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLA   76 (156)
T ss_dssp             CSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             ccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            34557777777  88999999999999999999999986543

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=91.29  E-value=0.2  Score=39.26  Aligned_cols=66  Identities=9%  Similarity=0.058  Sum_probs=42.2

Q ss_pred             ccCCCeEEEEc-----------------cChHHHHHHHHhccCCCEEEEEcCC-CCChhHHHhcCceecCC-------HH
Q 026360           33 DLEGKTVGTVG-----------------CGRIGKLLLQRLKPFNCNLLYHDRV-KMDPQLEKETGAKFEED-------LD   87 (240)
Q Consensus        33 ~l~g~~vgIIG-----------------~G~iG~~~A~~l~~~G~~V~~~d~~-~~~~~~~~~~g~~~~~~-------l~   87 (240)
                      +|.|++|.|-+                 -|.+|.++|+.+...|++|+++.-. .....  .......+.+       ..
T Consensus         3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~~p--~~~~~~~~~t~~~m~~~~~   80 (223)
T d1u7za_           3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLPTP--PFVKRVDVMTALEMEAAVN   80 (223)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCCCC--TTEEEEECCSHHHHHHHHH
T ss_pred             ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccccCcc--cccccceehhhHHHHHHHH
Confidence            56777777665                 5899999999999999999887632 21111  0111111222       22


Q ss_pred             hhcCcCCEEEEcC
Q 026360           88 TMLPKCDIVVVNT  100 (240)
Q Consensus        88 ell~~aDiVvl~l  100 (240)
                      +.+.++|+++.+.
T Consensus        81 ~~~~~~D~~i~aA   93 (223)
T d1u7za_          81 ASVQQQNIFIGCA   93 (223)
T ss_dssp             HHGGGCSEEEECC
T ss_pred             hhhccceeEeeee
Confidence            4567899888765

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=91.20  E-value=0.059  Score=40.59  Aligned_cols=34  Identities=12%  Similarity=0.040  Sum_probs=30.8

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV   68 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~   68 (240)
                      +++.|.|||-|..|-..|..+..+|++|+++++.
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~   37 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM   37 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEee
Confidence            4678999999999999999999999999999864

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=90.89  E-value=0.15  Score=40.99  Aligned_cols=31  Identities=23%  Similarity=0.357  Sum_probs=27.3

Q ss_pred             eEEEEc-cChHHHHHHHHhccCCCEEEEEcCC
Q 026360           38 TVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRV   68 (240)
Q Consensus        38 ~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~   68 (240)
                      ||.|.| .|-||+.+++.|...|++|+++|+.
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~   33 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNL   33 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            677777 6999999999999999999999853

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.66  E-value=0.11  Score=42.18  Aligned_cols=33  Identities=24%  Similarity=0.320  Sum_probs=30.0

Q ss_pred             eEEEEccChHHHHHHHHhccCCCEEEEEcCCCC
Q 026360           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM   70 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~   70 (240)
                      .|.|||.|..|-.+|..|+..|.+|++++.+..
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH   35 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            588999999999999999999999999997653

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=90.59  E-value=0.088  Score=40.34  Aligned_cols=38  Identities=24%  Similarity=0.453  Sum_probs=32.3

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      .+++||+|.|||.|.-|..+|..+...+.+++..-+++
T Consensus        28 ~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          28 VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            36899999999999999999999988888877665543

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=90.46  E-value=0.12  Score=39.32  Aligned_cols=30  Identities=13%  Similarity=0.107  Sum_probs=28.3

Q ss_pred             EEEEccChHHHHHHHHhccCCCEEEEEcCC
Q 026360           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRV   68 (240)
Q Consensus        39 vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~   68 (240)
                      |.|||.|..|...|..++.+|.+|.++++.
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            789999999999999999999999999874

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.38  E-value=0.07  Score=41.07  Aligned_cols=34  Identities=12%  Similarity=0.043  Sum_probs=29.4

Q ss_pred             CeEEEEccChHHHHHHHHhccCC-------CEEEEEcCCCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFN-------CNLLYHDRVKM   70 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G-------~~V~~~d~~~~   70 (240)
                      .+|+|||.|.-|-+.|..|...|       ++|++|++.+.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            48999999999999999997766       68999998653

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=90.31  E-value=0.16  Score=41.45  Aligned_cols=65  Identities=22%  Similarity=0.192  Sum_probs=41.0

Q ss_pred             CeEEEEc-cChHHHHHHHHhccCC-CEEEEEcCCCCChhHHH-hcCcee-------cCCH-HhhcCcCCEEEEcCC
Q 026360           37 KTVGTVG-CGRIGKLLLQRLKPFN-CNLLYHDRVKMDPQLEK-ETGAKF-------EEDL-DTMLPKCDIVVVNTP  101 (240)
Q Consensus        37 ~~vgIIG-~G~iG~~~A~~l~~~G-~~V~~~d~~~~~~~~~~-~~g~~~-------~~~l-~ell~~aDiVvl~lp  101 (240)
                      +||.|.| .|-||+.+++.|.+.| .+|++.|+......... ..+++.       ..++ +...+++|+|+-++-
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~   76 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVA   76 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCccccccc
Confidence            5789999 5999999999998888 58999987532222111 112211       1122 236677998876553

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=90.20  E-value=0.12  Score=40.84  Aligned_cols=31  Identities=26%  Similarity=0.254  Sum_probs=28.9

Q ss_pred             EEEEccChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        39 vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      |.|||.|-+|.++|..|...|.+|+++++..
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            7899999999999999999999999999753

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=90.15  E-value=0.12  Score=41.45  Aligned_cols=32  Identities=22%  Similarity=0.288  Sum_probs=28.7

Q ss_pred             eEEEEccChHHHHHHHHhccCCC-EEEEEcCCC
Q 026360           38 TVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK   69 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~   69 (240)
                      +|.|||.|.+|.++|..|...|. +|+++++..
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            58999999999999999998996 599999763

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=90.07  E-value=0.13  Score=41.94  Aligned_cols=35  Identities=26%  Similarity=0.267  Sum_probs=31.7

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      ....|.|||.|..|-.+|..|+..|.+|+++++.+
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~   40 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAG   40 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            46679999999999999999999999999999754

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.05  E-value=0.12  Score=41.39  Aligned_cols=31  Identities=23%  Similarity=0.178  Sum_probs=28.8

Q ss_pred             EEEEccChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        39 vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      |.|||.|..|-..|..|+..|++|++++.+.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            7899999999999999999999999998654

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.03  E-value=0.13  Score=42.91  Aligned_cols=31  Identities=26%  Similarity=0.235  Sum_probs=28.5

Q ss_pred             CCeEEEEc-cChHHHHHHHHhccCCCEEEEEc
Q 026360           36 GKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHD   66 (240)
Q Consensus        36 g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d   66 (240)
                      ||+|.|.| .|-||+.+++.|...|++|+++|
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            79999999 59999999999999999999997

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.90  E-value=0.18  Score=40.52  Aligned_cols=33  Identities=15%  Similarity=0.084  Sum_probs=29.7

Q ss_pred             CeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        37 ~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      |+|.|.| .|-||+.+++.|...|++|+++++..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~   34 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARR   34 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            6888999 59999999999999999999999764

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.84  E-value=0.12  Score=39.06  Aligned_cols=34  Identities=12%  Similarity=0.048  Sum_probs=30.8

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV   68 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~   68 (240)
                      ..++|.|||-|..|...|..+...|++|++++..
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~   37 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGW   37 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEee
Confidence            4578999999999999999999999999999854

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=89.81  E-value=0.14  Score=39.71  Aligned_cols=32  Identities=22%  Similarity=0.196  Sum_probs=29.5

Q ss_pred             EEEEccChHHHHHHHHhccCCCEEEEEcCCCC
Q 026360           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM   70 (240)
Q Consensus        39 vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~   70 (240)
                      |.|||.|..|...|..|...|++|+++++.+.
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            78999999999999999999999999997653

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.76  E-value=1.2  Score=31.92  Aligned_cols=75  Identities=19%  Similarity=0.280  Sum_probs=43.2

Q ss_pred             eEEEEc-cChHHHHHHHHhc-cCCCEEE-EEcCCCCChhHHHhcCceecCCHHhh-cCcCCEEEEcCCCChhhhhcccHH
Q 026360           38 TVGTVG-CGRIGKLLLQRLK-PFNCNLL-YHDRVKMDPQLEKETGAKFEEDLDTM-LPKCDIVVVNTPLTEKTRGMFDKD  113 (240)
Q Consensus        38 ~vgIIG-~G~iG~~~A~~l~-~~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~el-l~~aDiVvl~lp~~~~t~~~i~~~  113 (240)
                      ||+|+| .|+||+.+++.+. .-++++. ++|+.. .              +..+ ...+|+|+--.. .+.+...+.  
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~-~--------------~~~~~~~~~DvvIDFS~-p~~~~~~~~--   62 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD-P--------------LSLLTDGNTEVVIDFTH-PDVVMGNLE--   62 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC-C--------------THHHHTTTCSEEEECCC-TTTHHHHHH--
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC-c--------------hhhhccccCCEEEEccc-HHHHHHHHH--
Confidence            699999 6999999998865 4577754 556532 1              1111 246898876543 122222221  


Q ss_pred             HHccCCCCCEEEEcCCCcc
Q 026360          114 RIAKMKKGVLIVNNARGAI  132 (240)
Q Consensus       114 ~l~~mk~gailIN~srg~~  132 (240)
                      .  ..+.|.-+|--.+|=-
T Consensus        63 ~--~~~~~~~~ViGTTG~~   79 (135)
T d1yl7a1          63 F--LIDNGIHAVVGTTGFT   79 (135)
T ss_dssp             H--HHHTTCEEEECCCCCC
T ss_pred             H--HHhcCCCEEEeccccc
Confidence            1  1345555666666643

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=89.66  E-value=0.23  Score=35.95  Aligned_cols=32  Identities=25%  Similarity=0.234  Sum_probs=27.6

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      .||.|||.|.+|-.+|..|+. +.+|+++++.+
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP   32 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence            379999999999999999976 67999998643

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=89.37  E-value=0.16  Score=38.30  Aligned_cols=33  Identities=12%  Similarity=0.197  Sum_probs=28.2

Q ss_pred             CeEEEEccChHHHHHHHHhccC--CCEEEEEcCCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPF--NCNLLYHDRVK   69 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~--G~~V~~~d~~~   69 (240)
                      +||.|||.|.+|-.+|..|+..  +.+|+++++..
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            5899999999999999999876  56799888643

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.99  E-value=0.12  Score=40.31  Aligned_cols=38  Identities=13%  Similarity=0.088  Sum_probs=29.5

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhH
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQL   74 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~   74 (240)
                      .|.+|..+|+|. |+ .+..|...|++|+++|.++...+.
T Consensus        45 ~~~rvLd~GCG~-G~-~a~~LA~~G~~V~gvD~S~~ai~~   82 (229)
T d2bzga1          45 SGLRVFFPLCGK-AV-EMKWFADRGHSVVGVEISELGIQE   82 (229)
T ss_dssp             CSCEEEETTCTT-CT-HHHHHHHTTCEEEEECSCHHHHHH
T ss_pred             CCCEEEEeCCCC-cH-HHHHHHhCCCcEEEEeCCHHHHHH
Confidence            688999999998 54 456667789999999987644433

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.96  E-value=0.18  Score=38.42  Aligned_cols=32  Identities=16%  Similarity=0.186  Sum_probs=29.1

Q ss_pred             eEEEEccChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      -|.|||.|..|...|..+...|++|.+++..+
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            37899999999999999999999999999654

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=88.95  E-value=0.15  Score=38.50  Aligned_cols=31  Identities=23%  Similarity=0.312  Sum_probs=24.2

Q ss_pred             CeEEEEccChHHHHHHHHhccC---CCEEEEEcC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPF---NCNLLYHDR   67 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~---G~~V~~~d~   67 (240)
                      .+|||=|+|+||+.+.+.+...   ..+|++.+.
T Consensus         1 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd   34 (172)
T d1rm4a1           1 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVIND   34 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcC
Confidence            4799999999999999977643   367776654

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=88.84  E-value=0.12  Score=40.01  Aligned_cols=92  Identities=13%  Similarity=0.166  Sum_probs=55.1

Q ss_pred             CCCeEEEEcc--ChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh----cCc----e-ecCCHHh-hcCcCCEEEEcCCC
Q 026360           35 EGKTVGTVGC--GRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE----TGA----K-FEEDLDT-MLPKCDIVVVNTPL  102 (240)
Q Consensus        35 ~g~~vgIIG~--G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~----~g~----~-~~~~l~e-ll~~aDiVvl~lp~  102 (240)
                      .+.+|.=+|+  |.+...+++.+...|.+|+++|.++.-.+.+++    .+.    . ...+..+ -...+|+++...-+
T Consensus        39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l  118 (225)
T d1im8a_          39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL  118 (225)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCG
T ss_pred             CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeec
Confidence            5778999998  666677777777779999999997644444432    111    1 1112222 13456776654221


Q ss_pred             ---ChhhhhcccHHHHccCCCCCEEEE
Q 026360          103 ---TEKTRGMFDKDRIAKMKKGVLIVN  126 (240)
Q Consensus       103 ---~~~t~~~i~~~~l~~mk~gailIN  126 (240)
                         +++...-+-++..+.||||+.++-
T Consensus       119 ~~~~~~d~~~~l~~i~~~LkpgG~li~  145 (225)
T d1im8a_         119 QFLPPEDRIALLTKIYEGLNPNGVLVL  145 (225)
T ss_dssp             GGSCGGGHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccChhhHHHHHHHHHHhCCCCceeec
Confidence               112222344567788999988875

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.83  E-value=0.023  Score=43.89  Aligned_cols=25  Identities=20%  Similarity=0.153  Sum_probs=22.6

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCE
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCN   61 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~   61 (240)
                      ++|.|||.|-+|-+.|..|+..|.+
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~   25 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHS   25 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCC
Confidence            5899999999999999999988864

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=88.78  E-value=0.2  Score=38.73  Aligned_cols=35  Identities=14%  Similarity=0.152  Sum_probs=30.3

Q ss_pred             CCeEEEEcc-ChHHHHHHHHhccCCCEEEEEcCCCC
Q 026360           36 GKTVGTVGC-GRIGKLLLQRLKPFNCNLLYHDRVKM   70 (240)
Q Consensus        36 g~~vgIIG~-G~iG~~~A~~l~~~G~~V~~~d~~~~   70 (240)
                      +|++.|-|. +.||+++|+.|...|++|++.+++..
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   36 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE   36 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            467778785 79999999999999999999998754

>d2vjma1 c.123.1.1 (A:2-428) Formyl-CoA transferase {Oxalobacter formigenes [TaxId: 847]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: Formyl-CoA transferase
species: Oxalobacter formigenes [TaxId: 847]

Probab=88.77  E-value=0.71  Score=38.90  Aligned_cols=96  Identities=20%  Similarity=0.155  Sum_probs=67.6

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCC-Ch-------------hHHHhc--Ccee--c--------CCH
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKM-DP-------------QLEKET--GAKF--E--------EDL   86 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~-~~-------------~~~~~~--g~~~--~--------~~l   86 (240)
                      .|.|-+|.=++-...|-.+++.|..+|++|+=+.+... ..             ..+...  |-+.  .        .-+
T Consensus         3 PL~GirVld~~~~~agp~~~~~LadlGAeVIkvE~p~~gd~~R~~~~~~~~~~s~~~~~~nr~K~si~lDL~~~~g~~~~   82 (427)
T d2vjma1           3 PLDGINVLDFTHVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSLYFTMFNCNKRSIELDMKTPEGKELL   82 (427)
T ss_dssp             TTTTCEEEECCCTTHHHHHHHHHHHTTCEEEEEECTTTCSGGGGSSCSSTTSCCHHHHTTCSSCEEEECCTTSHHHHHHH
T ss_pred             CCCCCEEEEcCChhHHHHHHHHHHHhCCeEEEECCCCCCCcccccCCCCCCCccHHHHHhCCCCeEEEEeCcCHHHHHHH
Confidence            48999998888888888999999999999999985311 00             011111  1110  1        125


Q ss_pred             HhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcC
Q 026360           87 DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus        87 ~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      .+|+++||+|+-..+-..--+-=++.+.++...|.-+.+.++
T Consensus        83 ~~Lv~~aDv~i~n~~pg~~~rlGL~~~~l~~~NP~LI~~sis  124 (427)
T d2vjma1          83 EQMIKKADVMVENFGPGALDRMGFTWEYIQELNPRVILASVK  124 (427)
T ss_dssp             HHHHHHCSEEEECCSTTHHHHTTCCHHHHHHHCTTCEEEEEE
T ss_pred             HHHHHhCCeeeECCCcchHHHcCCCchhhhhhCCccceeeee
Confidence            689999999998876333334446889999999999998884

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=88.69  E-value=0.15  Score=38.76  Aligned_cols=31  Identities=13%  Similarity=0.117  Sum_probs=28.7

Q ss_pred             EEEEccChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        39 vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      |.|||.|..|...|..+..+|.+|++++..+
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            7899999999999999999999999998753

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.57  E-value=0.23  Score=35.53  Aligned_cols=35  Identities=23%  Similarity=0.294  Sum_probs=29.5

Q ss_pred             CCCeEEEEccChHHHHHHHHh----ccCCCEEEEEcCCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRL----KPFNCNLLYHDRVK   69 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l----~~~G~~V~~~d~~~   69 (240)
                      .++++.|||-|.+|-.+|..|    ++.|.+|+.+++.+
T Consensus        36 ~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~   74 (137)
T d1m6ia2          36 EVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEK   74 (137)
T ss_dssp             HCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccc
Confidence            378999999999999998777    45799999998754

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=88.54  E-value=0.39  Score=33.88  Aligned_cols=39  Identities=13%  Similarity=0.141  Sum_probs=34.7

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      +...+||+|+|||.|..+-..|..|..+.-+|+++.|.+
T Consensus        22 ~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~   60 (126)
T d1trba2          22 GFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD   60 (126)
T ss_dssp             GGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             hHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecc
Confidence            344689999999999999999999999999999998754

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=88.38  E-value=0.25  Score=37.17  Aligned_cols=30  Identities=23%  Similarity=0.398  Sum_probs=24.7

Q ss_pred             eEEEEccChHHHHHHHHhcc---CCCEEEEEcC
Q 026360           38 TVGTVGCGRIGKLLLQRLKP---FNCNLLYHDR   67 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~~---~G~~V~~~d~   67 (240)
                      ||||=|+|+||+.+.+.+..   .+.+|++.+-
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd   34 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAIND   34 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCEEEEEecc
Confidence            79999999999999998763   3578777764

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.35  E-value=0.39  Score=33.21  Aligned_cols=34  Identities=21%  Similarity=0.190  Sum_probs=27.7

Q ss_pred             CCeEEEEccChHHHHHHHHhccC---CCEEEEEcCCC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKPF---NCNLLYHDRVK   69 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~~---G~~V~~~d~~~   69 (240)
                      .+++.|||.|.+|-.+|..+..+   |.+|+.+.+.+
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            47999999999999999766654   56799888754

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.20  E-value=0.25  Score=38.52  Aligned_cols=35  Identities=23%  Similarity=0.227  Sum_probs=30.1

Q ss_pred             CCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 026360           36 GKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVKM   70 (240)
Q Consensus        36 g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~~   70 (240)
                      +.+|.|.| -|.||+++|+.|.+.|++|++.|++..
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~   37 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   37 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            45677888 589999999999999999999998753

>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Polymyxin resistance protein ArnA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.16  E-value=3.7  Score=30.96  Aligned_cols=157  Identities=9%  Similarity=0.052  Sum_probs=88.7

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEE-EcCCCCC---------hhHHHhcCceec--CCH--H---hhc--CcCCEEE
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLY-HDRVKMD---------PQLEKETGAKFE--EDL--D---TML--PKCDIVV   97 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~-~d~~~~~---------~~~~~~~g~~~~--~~l--~---ell--~~aDiVv   97 (240)
                      ++|.++|.+.+|..+.+.|...|.+|.+ +.....+         ...+.+.++...  .++  +   +.+  .+.|+++
T Consensus         1 Mkiv~~~~~~~g~~~l~~L~~~g~~I~~Vvt~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~i~~~~~Dlii   80 (203)
T d2blna2           1 MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIF   80 (203)
T ss_dssp             CEEEEEECHHHHHHHHHHHHHTTCEEEEEECCCC------CCCCHHHHHHHHTCCEECCSCCCSHHHHHHHHHTCCSEEE
T ss_pred             CeEEEEecCHHHHHHHHHHHHCCCCEEEEEcCCCCCCcccccCHHHHHHHHcCCcceecccccchhhhhhhhhhccccee
Confidence            5899999999999999999988999854 4321111         123334444321  111  1   222  3679887


Q ss_pred             EcCCCChhhhhcccHHHHccCCCCCEEEEcC-----CCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCCCCCCCe
Q 026360           98 VNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA-----RGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ  172 (240)
Q Consensus        98 l~lp~~~~t~~~i~~~~l~~mk~gailIN~s-----rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nv  172 (240)
                      +.--     ..++..+.++..+.+.+=+.-|     ||.    ..+..++.+|.-. .+.-++.-++.-+..+.+....+
T Consensus        81 ~~g~-----~~ii~~~il~~~~~~~iN~H~slLP~yrG~----~p~~wai~~g~~~-~G~Tih~i~~~iD~G~Il~q~~~  150 (203)
T d2blna2          81 SFYY-----RHLIYDEILQLAPAGAFNLHGSLLPKYRGR----APLNWVLVNGETE-TGVTLHRMVKRADAGAIVAQLRI  150 (203)
T ss_dssp             EESC-----CSCCCHHHHTTCTTCEEEEESSCTTTTEES----CHHHHHHHTTCSE-EEEEEEECCSSTTCSCEEEEEEE
T ss_pred             eeec-----ccchhcccchhhHHHHHHHhhhcchhhhhh----hhhhhhhhccccc-ccceeEEeeccCCCccceeeccc
Confidence            7652     3577888888777665555554     343    2355666666432 34444444444444555555556


Q ss_pred             EEcCCCCCCcHHH-HHHhhh--hHHHHHHHHHHHccC
Q 026360          173 AMTPHVSGTTIDA-QVIVHF--FPVFMRLFTSFLSHK  206 (240)
Q Consensus       173 ~~TPH~a~~t~~~-~~~~~~--~~~~~~~~~~~~~g~  206 (240)
                      -+.|.-   |.+. ..++..  ...+.+.+..+.+|.
T Consensus       151 ~i~~~~---t~~~l~~k~~~~~~~l~~~~l~~i~~g~  184 (203)
T d2blna2         151 AIAPDD---IAITLHHKLCHAARQLLEQTLPAIKHGN  184 (203)
T ss_dssp             ECCTTC---CHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccchh---hHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            666653   3332 233322  114556677777774

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=88.08  E-value=0.24  Score=36.35  Aligned_cols=30  Identities=17%  Similarity=-0.034  Sum_probs=27.9

Q ss_pred             EEEEccChHHHHHHHHhccCCCEEEEEcCC
Q 026360           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRV   68 (240)
Q Consensus        39 vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~   68 (240)
                      |.|||-|..|-..|..+..+|++|+++++.
T Consensus         4 ViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           4 VLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            789999999999999999999999999864

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=88.06  E-value=0.23  Score=40.05  Aligned_cols=32  Identities=22%  Similarity=0.227  Sum_probs=28.3

Q ss_pred             eEEEEccChHHHHHHHHhc-----cCCCEEEEEcCCC
Q 026360           38 TVGTVGCGRIGKLLLQRLK-----PFNCNLLYHDRVK   69 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~-----~~G~~V~~~d~~~   69 (240)
                      -|.|||.|..|..+|..|.     ..|.+|+++++.+
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~   45 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS   45 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCC
Confidence            4899999999999999994     5799999999764

>d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB
species: Escherichia coli [TaxId: 562]

Probab=87.94  E-value=1  Score=37.59  Aligned_cols=96  Identities=14%  Similarity=0.164  Sum_probs=69.0

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCC-CCh-----hHHH--hcCceec----------CCHHhhcCcCC
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK-MDP-----QLEK--ETGAKFE----------EDLDTMLPKCD   94 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~-~~~-----~~~~--~~g~~~~----------~~l~ell~~aD   94 (240)
                      .|.|-+|.=++-+..|-..++.|..+|++|+=+.+.. ...     ....  ..|-+.+          .-+.+|+++||
T Consensus         8 PL~GirVld~~~~~agp~~~~~Lad~GAeVIkvE~p~~gd~~r~~~~~~~~~n~~K~si~ldl~~~~G~~~~~~Lv~~aD   87 (402)
T d1xk7a1           8 PLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETTD   87 (402)
T ss_dssp             TTTTCEEEEECCSSHHHHHHHHHHHTTCEEEEEECSSSCCGGGGSSSHHHHHTTTCEEEEECTTSHHHHHHHHHHHTTCS
T ss_pred             CCCCCEEEEeCChhHHHHHHHHHHHhCCeEEEECCCCCCCccccCCchhHHhCCCCeEEEEeCcCHHHHHHHHHHHhhcC
Confidence            4899999999988889999999999999999887532 111     1111  1232211          12458999999


Q ss_pred             EEEEcCCCChhhhhcccHHHHccCCCCCEEEEcC
Q 026360           95 IVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus        95 iVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      +|+-..+-..-.+-=++.+.++...|.-+.+.++
T Consensus        88 v~i~n~rpg~~~~lGl~~~~L~~~nP~lI~~sis  121 (402)
T d1xk7a1          88 IFIEASKGPAFARRGITDEVLWQHNPKLVIAHLS  121 (402)
T ss_dssp             EEEEECSSSHHHHTTCCHHHHHHHCTTCEEEEEE
T ss_pred             Cceeeecccccccccccccchhhccccccceeee
Confidence            9998776443334457888999999999998884

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.80  E-value=0.34  Score=40.01  Aligned_cols=91  Identities=21%  Similarity=0.364  Sum_probs=54.8

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCCCChhHHHh-----------cC-----cee-cCC-----HHhhcC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVKMDPQLEKE-----------TG-----AKF-EED-----LDTMLP   91 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~-----------~g-----~~~-~~~-----l~ell~   91 (240)
                      .+.++.=+|+|. |..+...++..|+ +++++|.++...+.++.           .|     +.. ..+     ..+.+.
T Consensus       151 ~~~~vlD~GcG~-G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~~~  229 (328)
T d1nw3a_         151 DDDLFVDLGSGV-GQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIA  229 (328)
T ss_dssp             TTCEEEEETCTT-SHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHHHH
T ss_pred             CCCEEEEcCCCC-CHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccccccccC
Confidence            378999999976 5555555566666 69999987643332221           11     111 112     234455


Q ss_pred             cCCEEEEcCC-CChhhhhcccHHHHccCCCCCEEEEc
Q 026360           92 KCDIVVVNTP-LTEKTRGMFDKDRIAKMKKGVLIVNN  127 (240)
Q Consensus        92 ~aDiVvl~lp-~~~~t~~~i~~~~l~~mk~gailIN~  127 (240)
                      ++|+|++..- ..++....+ .+.+..||||+.+|..
T Consensus       230 ~advi~~~~~~f~~~~~~~l-~e~~r~LKpGg~iv~~  265 (328)
T d1nw3a_         230 NTSVIFVNNFAFGPEVDHQL-KERFANMKEGGRIVSS  265 (328)
T ss_dssp             HCSEEEECCTTTCHHHHHHH-HHHHTTCCTTCEEEES
T ss_pred             cceEEEEcceecchHHHHHH-HHHHHhCCCCcEEEEe
Confidence            7899886432 233333333 4778889999999875

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.40  E-value=0.28  Score=37.59  Aligned_cols=30  Identities=20%  Similarity=0.231  Sum_probs=28.2

Q ss_pred             EEEEccChHHHHHHHHhccCCCEEEEEcCC
Q 026360           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRV   68 (240)
Q Consensus        39 vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~   68 (240)
                      |.|||.|..|...|..++.+|++|.+++..
T Consensus         6 viVIG~GpaGl~aA~~aa~~G~kV~viE~~   35 (235)
T d1h6va1           6 LIIIGGGSGGLAAAKEAAKFDKKVMVLDFV   35 (235)
T ss_dssp             EEEECCSHHHHHHHHHHGGGCCCEEEECCC
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            789999999999999999999999999854

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.38  E-value=0.22  Score=40.88  Aligned_cols=113  Identities=9%  Similarity=0.134  Sum_probs=68.5

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccC----CC-------EEEEEcCCCC---Ch----hHHHhc----Cc-eecCCHH
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPF----NC-------NLLYHDRVKM---DP----QLEKET----GA-KFEEDLD   87 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~----G~-------~V~~~d~~~~---~~----~~~~~~----g~-~~~~~l~   87 (240)
                      +..|...+|.|.|.|.-|..+|+.+...    |.       +++.+|+...   ..    ...+..    .. ....+++
T Consensus        20 gk~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L~   99 (294)
T d1pj3a1          20 SKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFE   99 (294)
T ss_dssp             CCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHH
T ss_pred             CCCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhhccccccchhHHH
Confidence            4568899999999999999999887654    33       4888887531   10    111110    00 1124678


Q ss_pred             hhcC--cCCEEEEcCCCChhhhhcccHHHHc---cCCCCCEEEEcCCCcccC---HHHHHHHHHhCCcc
Q 026360           88 TMLP--KCDIVVVNTPLTEKTRGMFDKDRIA---KMKKGVLIVNNARGAIMD---TQAVVDACSSGHIA  148 (240)
Q Consensus        88 ell~--~aDiVvl~lp~~~~t~~~i~~~~l~---~mk~gailIN~srg~~vd---~~aL~~aL~~g~i~  148 (240)
                      ++++  +.|+++-+..    ..++++++.++   .|.+.++|.=.|....--   .++.+++ .+|+..
T Consensus       100 e~i~~~kptvliG~S~----~~g~ft~evi~~Ma~~~~~PIIFaLSNPt~~~e~~~~~a~~~-t~grai  163 (294)
T d1pj3a1         100 DAVNILKPSTIIGVAG----AGRLFTPDVIRAMASINERPVIFALSNPTAQAECTAEEAYTL-TEGRCL  163 (294)
T ss_dssp             HHHHHHCCSEEEECCC----SSCCSCHHHHHHHHHHCSSCEEEECCSSGGGCSCCHHHHHHH-TTTCCE
T ss_pred             HHHHhcCCceEEEecC----CCCcCCHHHHHHHHhcCCCcEEEEccCCCCcCCcCHHHHHhh-ccCceE
Confidence            8765  6776655542    13566766664   456889999999875432   3333333 344444

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=86.95  E-value=0.44  Score=37.98  Aligned_cols=109  Identities=18%  Similarity=0.167  Sum_probs=69.1

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh----cCce---ecCCHHhhc--CcCCEEEEcCCCCh
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE----TGAK---FEEDLDTML--PKCDIVVVNTPLTE  104 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~----~g~~---~~~~l~ell--~~aDiVvl~lp~~~  104 (240)
                      ..|++|.=+|+|. |. ++..++..|.+|+++|.++...+.+++    .|+.   ...+..+.+  ...|+|+..... .
T Consensus       119 ~~g~~VLDiGcGs-G~-l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani~~-~  195 (254)
T d2nxca1         119 RPGDKVLDLGTGS-GV-LAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYA-E  195 (254)
T ss_dssp             CTTCEEEEETCTT-SH-HHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCH-H
T ss_pred             CccCEEEEcccch-hH-HHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhcccc-c
Confidence            5799999999996 54 444566679999999998766554442    2332   234555554  458888766532 1


Q ss_pred             hhhhcccHHHHccCCCCCEEEEcCCCcc-cCHHHHHHHHHhCCcc
Q 026360          105 KTRGMFDKDRIAKMKKGVLIVNNARGAI-MDTQAVVDACSSGHIA  148 (240)
Q Consensus       105 ~t~~~i~~~~l~~mk~gailIN~srg~~-vd~~aL~~aL~~g~i~  148 (240)
                      .... +-.+..+.+|||..++-.+  -+ -+.+.+.+++++.+..
T Consensus       196 ~l~~-l~~~~~~~LkpGG~lilSg--il~~~~~~v~~~~~~~Gf~  237 (254)
T d2nxca1         196 LHAA-LAPRYREALVPGGRALLTG--ILKDRAPLVREAMAGAGFR  237 (254)
T ss_dssp             HHHH-HHHHHHHHEEEEEEEEEEE--EEGGGHHHHHHHHHHTTCE
T ss_pred             cHHH-HHHHHHHhcCCCcEEEEEe--cchhhHHHHHHHHHHCCCE
Confidence            2222 2345667799998877432  11 2456778888876654

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=86.77  E-value=0.37  Score=37.61  Aligned_cols=34  Identities=18%  Similarity=0.155  Sum_probs=30.6

Q ss_pred             eEEEEccChHHHHHHHHhccCCCEEEEEcCCCCC
Q 026360           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMD   71 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~   71 (240)
                      .|.|||.|..|...|..|...|.+|+++++.+..
T Consensus         6 DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~   39 (253)
T d2gqfa1           6 ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI   39 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            4889999999999999999999999999986543

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.65  E-value=0.33  Score=39.37  Aligned_cols=33  Identities=21%  Similarity=0.128  Sum_probs=28.8

Q ss_pred             CeE-EEEc-cChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           37 KTV-GTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        37 ~~v-gIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      ||| .|.| .|-||+.+++.|...|++|+++|+..
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~   35 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRS   35 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            578 5778 68999999999999999999999854

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.52  E-value=0.59  Score=37.63  Aligned_cols=90  Identities=14%  Similarity=0.156  Sum_probs=54.2

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH----hcCce-----ecCCHHhhcCcCCEEEEcCCC---
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK----ETGAK-----FEEDLDTMLPKCDIVVVNTPL---  102 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~----~~g~~-----~~~~l~ell~~aDiVvl~lp~---  102 (240)
                      .|.+|.=||+|.=| .....++..|++|++++.++...+.++    +.|..     ...+..+.-...|.|+..--.   
T Consensus        52 ~g~~VLDiGCG~G~-~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~fD~i~si~~~eh~  130 (280)
T d2fk8a1          52 PGMTLLDIGCGWGT-TMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEHF  130 (280)
T ss_dssp             TTCEEEEESCTTSH-HHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEESCGGGT
T ss_pred             CCCEEEEecCCchH-HHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccchhhhhHhhHHHHh
Confidence            48999999998643 333444566999999998764433332    23321     223555666678888664321   


Q ss_pred             ChhhhhcccHHHHccCCCCCEEE
Q 026360          103 TEKTRGMFDKDRIAKMKKGVLIV  125 (240)
Q Consensus       103 ~~~t~~~i~~~~l~~mk~gailI  125 (240)
                      .+.....+-++....||||..++
T Consensus       131 ~~~~~~~~f~~i~~~LkpgG~~~  153 (280)
T d2fk8a1         131 GHENYDDFFKRCFNIMPADGRMT  153 (280)
T ss_dssp             CGGGHHHHHHHHHHHSCTTCEEE
T ss_pred             hhhhHHHHHHHHHhccCCCceEE
Confidence            01222223456677799987664

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=86.46  E-value=0.3  Score=37.43  Aligned_cols=32  Identities=19%  Similarity=0.059  Sum_probs=29.2

Q ss_pred             eEEEEccChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      -|.|||.|..|.+.|..++..|.+|++++..+
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            37899999999999999999999999998654

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=86.42  E-value=0.24  Score=37.72  Aligned_cols=32  Identities=16%  Similarity=0.123  Sum_probs=29.1

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEEcCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV   68 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~   68 (240)
                      ..+.|||.|..|...|..++.+|.+|.+++..
T Consensus         6 ~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            35789999999999999999999999999864

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=86.36  E-value=0.32  Score=36.47  Aligned_cols=32  Identities=22%  Similarity=0.475  Sum_probs=26.2

Q ss_pred             CeEEEEccChHHHHHHHHhccC-CCEEEEEcCC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPF-NCNLLYHDRV   68 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~-G~~V~~~d~~   68 (240)
                      .+|||=|+|+||+.+.+.+... ..+|.+.+..
T Consensus         2 ikigINGFGRIGR~v~R~~~~~~~i~ivaINd~   34 (166)
T d1gado1           2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL   34 (166)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECS
T ss_pred             eEEEEECCcHHHHHHHHHHhhCCCeEEEEEeCC
Confidence            4799999999999999988765 5787777753

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.27  E-value=0.35  Score=39.32  Aligned_cols=34  Identities=26%  Similarity=0.297  Sum_probs=30.1

Q ss_pred             CCCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCC
Q 026360           35 EGKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRV   68 (240)
Q Consensus        35 ~g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~   68 (240)
                      .-|++.|.| .|-||+.+++.|.+.|++|+++|+.
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~   49 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNF   49 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            347888888 6999999999999999999999864

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.23  E-value=0.47  Score=36.82  Aligned_cols=27  Identities=26%  Similarity=0.218  Sum_probs=24.1

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhcc
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKP   57 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~   57 (240)
                      ...+.|++|.|||-|+++.-+|+.|..
T Consensus        34 ~~~~~gk~VvVIGgGNVAlD~aR~l~r   60 (225)
T d1cjca1          34 APDLSCDTAVILGQGNVALDVARILLT   60 (225)
T ss_dssp             CCCTTSSEEEEESCSHHHHHHHHHHHS
T ss_pred             CccccCceEEEECCchhHHHHHHHHhc
Confidence            346789999999999999999998876

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.16  E-value=0.33  Score=36.68  Aligned_cols=30  Identities=13%  Similarity=0.073  Sum_probs=28.0

Q ss_pred             EEEEccChHHHHHHHHhccCCCEEEEEcCC
Q 026360           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRV   68 (240)
Q Consensus        39 vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~   68 (240)
                      +.|||.|..|...|..+..+|.+|.+++..
T Consensus         6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGARAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            689999999999999999999999999864

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=86.06  E-value=0.32  Score=36.64  Aligned_cols=31  Identities=23%  Similarity=0.364  Sum_probs=24.4

Q ss_pred             CeEEEEccChHHHHHHHHhcc----CCCEEEEEcC
Q 026360           37 KTVGTVGCGRIGKLLLQRLKP----FNCNLLYHDR   67 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~----~G~~V~~~d~   67 (240)
                      .+|||=|+|+||+.+.+.+..    -..+|.+.+.
T Consensus         2 ikigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd   36 (173)
T d1obfo1           2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAIND   36 (173)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEEC
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcC
Confidence            479999999999999998753    2456777664

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=86.00  E-value=0.44  Score=37.02  Aligned_cols=33  Identities=15%  Similarity=0.102  Sum_probs=27.6

Q ss_pred             CeEEEEc-cChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        37 ~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      |.|.|.| .+.||+++|+.|...|++|++.|++.
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~   35 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRD   35 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            4456667 47799999999999999999999764

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.97  E-value=0.43  Score=34.90  Aligned_cols=34  Identities=12%  Similarity=-0.036  Sum_probs=28.7

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCE-EEEEcCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCN-LLYHDRV   68 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~-V~~~d~~   68 (240)
                      .+++|.|||-|.+|..+|..+..+|++ |+.+.+.
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr   78 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRK   78 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeC
Confidence            467899999999999999999988876 6666654

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.91  E-value=0.54  Score=36.19  Aligned_cols=26  Identities=23%  Similarity=0.304  Sum_probs=22.9

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhc
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLK   56 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~   56 (240)
                      ...+.|++|.|||-|+++.-+|+.+.
T Consensus        34 ~~~~~gk~VvVIGgGNvAlD~AR~ll   59 (216)
T d1lqta1          34 SPDLSGARAVVIGNGNVALDVARILL   59 (216)
T ss_dssp             CCCCCSSEEEEECCSHHHHHHHHHHH
T ss_pred             CccccCceEEEECCCchhHhhhhhhc
Confidence            34678999999999999999998775

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=85.81  E-value=0.49  Score=35.44  Aligned_cols=30  Identities=27%  Similarity=0.426  Sum_probs=24.4

Q ss_pred             eEEEEccChHHHHHHHHhcc-CCCEEEEEcC
Q 026360           38 TVGTVGCGRIGKLLLQRLKP-FNCNLLYHDR   67 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~~-~G~~V~~~d~   67 (240)
                      +|||=|+|+||+.+.+.+.. -..+|.+.+-
T Consensus         3 kIgINGFGRIGR~v~R~~~~~~~~~ivaINd   33 (169)
T d1u8fo1           3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAIND   33 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSEEEEEEC
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCcEEEEecC
Confidence            79999999999999987764 3578777754

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=85.57  E-value=0.24  Score=38.58  Aligned_cols=90  Identities=18%  Similarity=0.215  Sum_probs=52.6

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh----cC--ce-ecCCHHhh--cCcCCEEEEc----
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE----TG--AK-FEEDLDTM--LPKCDIVVVN----   99 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~----~g--~~-~~~~l~el--l~~aDiVvl~----   99 (240)
                      .+.+++|.=||+|. |+ ++..+...|.+|+++|.++...+.+++    .+  +. ...++.++  -+..|+|++.    
T Consensus        35 ~~~~~~vLDiGCG~-G~-~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~  112 (246)
T d1y8ca_          35 NLVFDDYLDLACGT-GN-LTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDST  112 (246)
T ss_dssp             TCCTTEEEEETCTT-ST-THHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGG
T ss_pred             CCCCCeEEEEeCcC-CH-HHHHHHHhCCccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeee
Confidence            46688999999984 43 445566678999999997643333322    22  22 22344433  2346888753    


Q ss_pred             --CCCChhhhhcccHHHHccCCCCCEEE
Q 026360          100 --TPLTEKTRGMFDKDRIAKMKKGVLIV  125 (240)
Q Consensus       100 --lp~~~~t~~~i~~~~l~~mk~gailI  125 (240)
                        ++..++... +-++..+.||||..+|
T Consensus       113 ~~~~~~~~~~~-~l~~~~~~LkpgG~~i  139 (246)
T d1y8ca_         113 NYIIDSDDLKK-YFKAVSNHLKEGGVFI  139 (246)
T ss_dssp             GGCCSHHHHHH-HHHHHHTTEEEEEEEE
T ss_pred             eccCCHHHHHH-HHHHHHHhCCCCeEEE
Confidence              222222222 2356777789987655

>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: 10-formyltetrahydrofolate dehydrogenase domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.47  E-value=3.2  Score=31.36  Aligned_cols=157  Identities=11%  Similarity=0.071  Sum_probs=91.2

Q ss_pred             CeEEEEccChHHHHHHHHhccCCCEEEEE-cC---CCCC---hhHHHhcCceec-------C-----CHHhhc--CcCCE
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPFNCNLLYH-DR---VKMD---PQLEKETGAKFE-------E-----DLDTML--PKCDI   95 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~G~~V~~~-d~---~~~~---~~~~~~~g~~~~-------~-----~l~ell--~~aDi   95 (240)
                      +||.++|.+..|..+.+.|...|++|.++ ..   ....   ...+.+.+....       .     ++-+.+  .+.|+
T Consensus         1 MkI~~~G~~~~~~~~l~~L~~~~~~i~~V~t~p~~~~~~~~v~~~a~~~~ipv~~~~~~~~~~~~~~~~~~~l~~~~~Dl   80 (203)
T d2bw0a2           1 MKIAVIGQSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKGQALPDVVAKYQALGAEL   80 (203)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEEEEECCCCSSCCCHHHHHHHHHTCCEEECSCCEETTEECHHHHHHHHTTCCSE
T ss_pred             CEEEEEcCCHHHHHHHHHHHHCCCcEEEEEcCCCcCcCCChhhhhHHhcCCcccccccccccccccHHHHHHHHHhCCCc
Confidence            58999999999999999998889997644 21   1111   122333343210       0     111112  35799


Q ss_pred             EEEcCCCChhhhhcccHHHHccCCCCCEEEEcC-----CCcccCHHHHHHHHHhCCccEEEeeCCCCCCCCCCCCCCCCC
Q 026360           96 VVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA-----RGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMP  170 (240)
Q Consensus        96 Vvl~lp~~~~t~~~i~~~~l~~mk~gailIN~s-----rg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~  170 (240)
                      ++++.-     ..++.++.++..+.|.+=+.-|     ||.    ..+..++.+|.-. .+.-++.-.+.-+..|.+.-.
T Consensus        81 iv~~~~-----~~ii~~~~l~~~~~g~iN~H~slLP~yrG~----~pi~wai~~g~~~-~GvTih~~~~~~D~G~Ii~q~  150 (203)
T d2bw0a2          81 NVLPFC-----SQFIPMEIISAPRHGSIIYHPSLLPRHRGA----SAINWTLIHGDKK-GGFSIFWADDGLDTGDLLLQK  150 (203)
T ss_dssp             EEESSC-----SSCCCHHHHTCSTTCEEEEESSCTTTTBSS----CHHHHHHHTTCSE-EEEEEEECCSSSSCSCEEEEE
T ss_pred             eEEeec-----chhhhhhhhhhhhhHhhhhhhccccccccc----ceeeeeecccccc-cCceeEEeccccccchhheee
Confidence            888753     4678888998777775545554     343    3466677777432 344455544444445555555


Q ss_pred             CeEEcCCCCCCcHHHH-HH-hhh--hHHHHHHHHHHHccC
Q 026360          171 NQAMTPHVSGTTIDAQ-VI-VHF--FPVFMRLFTSFLSHK  206 (240)
Q Consensus       171 nv~~TPH~a~~t~~~~-~~-~~~--~~~~~~~~~~~~~g~  206 (240)
                      .+-+.|+   .|.+.. .+ +..  .....+.+..+.+|.
T Consensus       151 ~~~i~~~---dt~~~l~~k~l~~~~~~~~~~~l~~i~~g~  187 (203)
T d2bw0a2         151 ECEVLPD---DTVSTLYNRFLFPEGIKGMVQAVRLIAEGK  187 (203)
T ss_dssp             EEECCTT---CCHHHHHHHTTTHHHHHHHHHHHHHHHHTC
T ss_pred             cccCCCC---ccHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            5667765   344442 33 222  115667788888875

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.26  E-value=0.47  Score=38.15  Aligned_cols=32  Identities=22%  Similarity=0.072  Sum_probs=28.6

Q ss_pred             CeEEEEc-cChHHHHHHHHhccCCCEEEEEcCC
Q 026360           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRV   68 (240)
Q Consensus        37 ~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~   68 (240)
                      |++.|.| .|-||+.+++.|...|++|+++|+.
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~   34 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRR   34 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECC
Confidence            5677778 6999999999999999999999974

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=85.04  E-value=0.67  Score=34.52  Aligned_cols=30  Identities=23%  Similarity=0.430  Sum_probs=24.9

Q ss_pred             eEEEEccChHHHHHHHHhccC-CCEEEEEcC
Q 026360           38 TVGTVGCGRIGKLLLQRLKPF-NCNLLYHDR   67 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~~~-G~~V~~~d~   67 (240)
                      +|||=|+|+||+.+.+.+... ..+|.+.+-
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~~iv~INd   32 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDIEVVAIND   32 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCcEEEEECC
Confidence            799999999999999988754 577777763

>d1x74a1 c.123.1.1 (A:2-360) 2-methylacyl-CoA racemase Mcr {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: 2-methylacyl-CoA racemase Mcr
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.98  E-value=1.6  Score=35.67  Aligned_cols=96  Identities=14%  Similarity=0.064  Sum_probs=67.4

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChh---HHHhcCceec----------CCHHhhcCcCCEEEEc
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQ---LEKETGAKFE----------EDLDTMLPKCDIVVVN   99 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~---~~~~~g~~~~----------~~l~ell~~aDiVvl~   99 (240)
                      .|.|-+|.=++-+.-|-.+++.|..+|++|+=+.+......   .....|-+.+          .-+.+|+++||+|+-.
T Consensus         3 PL~girVld~~~~~agp~~~~~lad~GA~VikvE~p~~~~~~~~~~~nr~K~si~lDl~~~~g~~~~~~Lv~~aDv~i~n   82 (359)
T d1x74a1           3 PLSGLRVVELAGIGPGPHAAMILGDLGADVVRIDRPSSVDGISRDAMLRNRRIVTADLKSDQGLELALKLIAKADVLIEG   82 (359)
T ss_dssp             TTTTCEEEEECCSTHHHHHHHHHHHTTCEEEEEECC-----CCCCGGGCSCEEEECCTTSHHHHHHHHHHHTTCSEEEEC
T ss_pred             CCCCCEEEEcCCchHHHHHHHHHHHhCCEEEEECCCCCCCchhhhhhhCCCeEEEEeCcCHHHHHHHHHHHhhCCEEEec
Confidence            48899999899888899999999999999998875321110   0111121111          1245889999999987


Q ss_pred             CCCChhhhhcccHHHHccCCCCCEEEEcC
Q 026360          100 TPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus       100 lp~~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      .+-..-.+-=++.+.++...|+.+.+.++
T Consensus        83 ~~pg~~~~lgl~~~~l~~~nP~lI~~sis  111 (359)
T d1x74a1          83 YRPGVTERLGLGPEECAKVNDRLIYARMT  111 (359)
T ss_dssp             SCTTHHHHHTCSHHHHHHHCTTCEEEEEE
T ss_pred             CCCCchhhcCCCHHHHHhhcCCceEEEEe
Confidence            76444444456889999999999999973

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.91  E-value=0.27  Score=35.69  Aligned_cols=29  Identities=28%  Similarity=0.329  Sum_probs=26.4

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCCEE
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNL   62 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V   62 (240)
                      -.|++|.|||.|.+|..+|..+...|.++
T Consensus        27 ~~gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          27 PVGNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CCCSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             ccCCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            46899999999999999999999999763

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=84.90  E-value=0.33  Score=38.13  Aligned_cols=33  Identities=18%  Similarity=0.264  Sum_probs=26.0

Q ss_pred             CeE-EEEcc-ChHHHHHHHHhccCCCE-------EEEEcCCC
Q 026360           37 KTV-GTVGC-GRIGKLLLQRLKPFNCN-------LLYHDRVK   69 (240)
Q Consensus        37 ~~v-gIIG~-G~iG~~~A~~l~~~G~~-------V~~~d~~~   69 (240)
                      |+| .|-|. +.||+++|+.|...|++       |+.++++.
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~   42 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTA   42 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCH
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCH
Confidence            454 45575 67999999999998987       88888864

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.84  E-value=0.7  Score=37.53  Aligned_cols=32  Identities=25%  Similarity=0.286  Sum_probs=27.9

Q ss_pred             CeEEEEc-cChHHHHHHHHhccCCCEEEEEcCC
Q 026360           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRV   68 (240)
Q Consensus        37 ~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~   68 (240)
                      |.|.|.| .|-||+.+++.|...|++|+++|+.
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~   34 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNL   34 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECC
Confidence            5677777 6999999999999999999999853

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.79  E-value=0.43  Score=35.91  Aligned_cols=31  Identities=16%  Similarity=0.140  Sum_probs=28.3

Q ss_pred             eEEEEccChHHHHHHHHhccCCCEEEEEcCC
Q 026360           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRV   68 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~   68 (240)
                      -+.|||.|..|...|..++..|.+|.++++.
T Consensus         5 DviVIG~GpaGl~aA~~aar~G~kV~vIEk~   35 (223)
T d1ebda1           5 ETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG   35 (223)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecC
Confidence            3789999999999999999999999999864

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=84.61  E-value=1.5  Score=33.97  Aligned_cols=38  Identities=18%  Similarity=0.220  Sum_probs=30.6

Q ss_pred             CCeEEEEcc-ChHHHHHHHHhc---cCCCEEEEEcCCCCChh
Q 026360           36 GKTVGTVGC-GRIGKLLLQRLK---PFNCNLLYHDRVKMDPQ   73 (240)
Q Consensus        36 g~~vgIIG~-G~iG~~~A~~l~---~~G~~V~~~d~~~~~~~   73 (240)
                      -|+|.|-|. +.||+++|+.|.   +.|++|++.+|+....+
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~   43 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAK   43 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence            478999996 789999998874   56999999998765443

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=84.56  E-value=0.32  Score=38.14  Aligned_cols=109  Identities=13%  Similarity=0.211  Sum_probs=63.7

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh----cC----ce-ecCCH-Hh---hcCcCCEEEEcCC
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE----TG----AK-FEEDL-DT---MLPKCDIVVVNTP  101 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~----~g----~~-~~~~l-~e---ll~~aDiVvl~lp  101 (240)
                      .|++|.=+|+|. |..+.+.++....+|+++|.++...+.++.    .+    +. ...+. .+   .-+..|+|++..-
T Consensus        24 ~~~~VLDlGCG~-G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~  102 (252)
T d1ri5a_          24 RGDSVLDLGCGK-GGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS  102 (252)
T ss_dssp             TTCEEEEETCTT-TTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred             CcCEEEEecccC-cHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcce
Confidence            588999999998 655545544433579999998654444432    12    11 11122 11   1235798876432


Q ss_pred             -----CChhhhhcccHHHHccCCCCCEEEEcCCCcccCHHHHHHHHHhCCcc
Q 026360          102 -----LTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIA  148 (240)
Q Consensus       102 -----~~~~t~~~i~~~~l~~mk~gailIN~srg~~vd~~aL~~aL~~g~i~  148 (240)
                           .+++....+-.+.-..||||.++|=+    ..|.+.+.+.+..+.+.
T Consensus       103 l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~----~~~~~~i~~~~~~~~~~  150 (252)
T d1ri5a_         103 FHYAFSTSESLDIAQRNIARHLRPGGYFIMT----VPSRDVILERYKQGRMS  150 (252)
T ss_dssp             GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE----EECHHHHHHHHHHTCCB
T ss_pred             eeecCCCHHHHHHHHHHHhceeCCCCEEEEE----ecCHHHHHHHHHhcccC
Confidence                 22222222234556678998887643    35678888888877653

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=84.40  E-value=0.14  Score=39.42  Aligned_cols=88  Identities=17%  Similarity=0.163  Sum_probs=51.6

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHhcCce--ecCCHHhh-c--CcCCEEEEcCCCC---hhh
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAK--FEEDLDTM-L--PKCDIVVVNTPLT---EKT  106 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~--~~~~l~el-l--~~aDiVvl~lp~~---~~t  106 (240)
                      .+++|.=+|+|. |... ..+...|.+|+++|.++...+.+++.+..  ...+.+++ +  ...|+|++.-..-   ++.
T Consensus        42 ~~~~vLDiGcG~-G~~~-~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~  119 (246)
T d2avna1          42 NPCRVLDLGGGT-GKWS-LFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENK  119 (246)
T ss_dssp             SCCEEEEETCTT-CHHH-HHHHTTTCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSCH
T ss_pred             CCCEEEEECCCC-chhc-ccccccceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhhhH
Confidence            578999999983 4433 45556699999999987555555554321  12233343 1  3468776532210   111


Q ss_pred             hhcccHHHHccCCCCCEEE
Q 026360          107 RGMFDKDRIAKMKKGVLIV  125 (240)
Q Consensus       107 ~~~i~~~~l~~mk~gailI  125 (240)
                      .. +-++....||||++++
T Consensus       120 ~~-~l~~i~r~Lk~gG~~i  137 (246)
T d2avna1         120 DK-AFSEIRRVLVPDGLLI  137 (246)
T ss_dssp             HH-HHHHHHHHEEEEEEEE
T ss_pred             HH-HHHHHHhhcCcCcEEE
Confidence            12 2246667889987665

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=83.94  E-value=0.74  Score=32.37  Aligned_cols=39  Identities=18%  Similarity=0.147  Sum_probs=34.2

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      +...+||+|.|||.|.-+-.-|..|..+.-+|+.+.|.+
T Consensus        25 ~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~   63 (126)
T d1fl2a2          25 GPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP   63 (126)
T ss_dssp             GGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSS
T ss_pred             hhhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEeccc
Confidence            456789999999999999999999999988999887653

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=83.52  E-value=0.48  Score=37.80  Aligned_cols=32  Identities=16%  Similarity=0.149  Sum_probs=29.5

Q ss_pred             eEEEEccChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      -|.|||.|..|...|..|...|.+|++++..+
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEP   49 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            48999999999999999999999999999754

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.45  E-value=0.5  Score=38.35  Aligned_cols=31  Identities=23%  Similarity=0.190  Sum_probs=28.4

Q ss_pred             CeEEEEc-cChHHHHHHHHhccCCCEEEEEcC
Q 026360           37 KTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDR   67 (240)
Q Consensus        37 ~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~   67 (240)
                      |||.|.| .|-||+.+++.|...|++|++.|+
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            6899988 699999999999999999999974

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=83.44  E-value=0.49  Score=37.43  Aligned_cols=36  Identities=17%  Similarity=0.154  Sum_probs=30.8

Q ss_pred             cCCCeEEEEccChHHHHHHHHhcc-CCCEEEEEcCCC
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKP-FNCNLLYHDRVK   69 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~-~G~~V~~~d~~~   69 (240)
                      ....-|.|||.|.-|-.+|..|.. .|++|.++++.+
T Consensus        31 ~~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~   67 (278)
T d1rp0a1          31 YAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV   67 (278)
T ss_dssp             HTEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCC
Confidence            345679999999999999999865 699999999764

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.35  E-value=0.37  Score=40.47  Aligned_cols=34  Identities=24%  Similarity=0.261  Sum_probs=29.6

Q ss_pred             CCeEEEEccChHHHHHHHHhcc------CCCEEEEEcCCC
Q 026360           36 GKTVGTVGCGRIGKLLLQRLKP------FNCNLLYHDRVK   69 (240)
Q Consensus        36 g~~vgIIG~G~iG~~~A~~l~~------~G~~V~~~d~~~   69 (240)
                      .--|.|||.|.-|.+.|..|++      .|++|+++++..
T Consensus        32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~   71 (380)
T d2gmha1          32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAA   71 (380)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCC
Confidence            3468999999999999999876      799999999754

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=83.08  E-value=0.51  Score=38.78  Aligned_cols=100  Identities=9%  Similarity=0.064  Sum_probs=58.1

Q ss_pred             ccccCCCeEEEEccChHHHHHHHHhccC----CC-------EEEEEcCCCCC---hh---HHHh-c--CceecCCHHhhc
Q 026360           31 AYDLEGKTVGTVGCGRIGKLLLQRLKPF----NC-------NLLYHDRVKMD---PQ---LEKE-T--GAKFEEDLDTML   90 (240)
Q Consensus        31 ~~~l~g~~vgIIG~G~iG~~~A~~l~~~----G~-------~V~~~d~~~~~---~~---~~~~-~--g~~~~~~l~ell   90 (240)
                      +..|...+|.|.|.|.-|..+|+.+...    |.       +++.+|+...-   .+   ..+. +  ......++.+++
T Consensus        20 gk~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Glv~~~r~d~~~~k~~~a~~~~~~~~l~~~i   99 (308)
T d1o0sa1          20 KKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNPRHVQFAKDMPETTSILEVI   99 (308)
T ss_dssp             CCCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSSCCGGGTTTCBSSCCCCCHHHHH
T ss_pred             CCCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCCccCCCcccCHHHHHHHHhcccCCcHHHHH
Confidence            4468899999999999999998887643    32       38888875311   00   0000 0  011123555555


Q ss_pred             CcC--CEEEEcCCCChhhhhcccHHHHccC---CCCCEEEEcCCCcccC
Q 026360           91 PKC--DIVVVNTPLTEKTRGMFDKDRIAKM---KKGVLIVNNARGAIMD  134 (240)
Q Consensus        91 ~~a--DiVvl~lp~~~~t~~~i~~~~l~~m---k~gailIN~srg~~vd  134 (240)
                      +..  ++++-+..    ..++++++.++.|   .+.++|.=.|....--
T Consensus       100 ~~~kptvliG~s~----~~g~ft~evv~~Ma~~~~~PIIFaLSNPtp~~  144 (308)
T d1o0sa1         100 RAARPGALIGAST----VRGAFNEEVIRAMAEINERPIIFALSNPTSKA  144 (308)
T ss_dssp             HHHCCSEEEECSS----CTTCSCHHHHHHHHHHCSSCEEEECCSSGGGC
T ss_pred             hccccccEEeccc----ccCCCCHHHHHHHHhhCCCcEEEEccCCCCCC
Confidence            433  34443321    1356666666544   4778888888765543

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=82.84  E-value=0.6  Score=35.01  Aligned_cols=30  Identities=23%  Similarity=0.398  Sum_probs=24.9

Q ss_pred             eEEEEccChHHHHHHHHhccC-CCEEEEEcC
Q 026360           38 TVGTVGCGRIGKLLLQRLKPF-NCNLLYHDR   67 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~~~-G~~V~~~d~   67 (240)
                      +|||=|+|+||+.+.+.+... ..+|.+.+.
T Consensus         3 kIgINGfGRIGR~v~R~~l~~~~~~ivaINd   33 (171)
T d3cmco1           3 KVGINGFGRIGRNVFRAALKNPDIEVVAVND   33 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEEEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCcEEEEEcC
Confidence            799999999999999888654 577777764

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.84  E-value=0.35  Score=35.96  Aligned_cols=20  Identities=30%  Similarity=0.640  Sum_probs=18.1

Q ss_pred             eEEEEccChHHHHHHHHhcc
Q 026360           38 TVGTVGCGRIGKLLLQRLKP   57 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~~   57 (240)
                      +|+|+|+|.+|+.+++.+..
T Consensus         6 ~I~l~G~G~VG~~l~~~l~~   25 (168)
T d1ebfa1           6 NVAVIGAGVVGSAFLDQLLA   25 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHH
T ss_pred             EEEEEeCCHHHHHHHHHHHH
Confidence            68999999999999998864

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=82.71  E-value=0.47  Score=36.63  Aligned_cols=89  Identities=15%  Similarity=0.164  Sum_probs=51.1

Q ss_pred             CCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHHh----cC--ce-ecCCHHhhc--CcCCEEEEcCC----
Q 026360           35 EGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKE----TG--AK-FEEDLDTML--PKCDIVVVNTP----  101 (240)
Q Consensus        35 ~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~----~g--~~-~~~~l~ell--~~aDiVvl~lp----  101 (240)
                      .+++|.=||+|. |.. +..|...|++|+++|.++.-.+.+++    .+  +. ...+.+++-  ...|+|++..-    
T Consensus        41 ~~~~iLDiGcGt-G~~-~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~I~~~~~~~~~  118 (251)
T d1wzna1          41 EVRRVLDLACGT-GIP-TLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMY  118 (251)
T ss_dssp             CCCEEEEETCTT-CHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECSSGGGG
T ss_pred             CCCEEEEeCCCC-Ccc-chhhcccceEEEEEeeccccccccccccccccccchheehhhhhcccccccchHhhhhhhhhc
Confidence            567899999987 554 34555678999999998644443332    22  22 223444332  34687776421    


Q ss_pred             CChhhhhcccHHHHccCCCCCEEE
Q 026360          102 LTEKTRGMFDKDRIAKMKKGVLIV  125 (240)
Q Consensus       102 ~~~~t~~~i~~~~l~~mk~gailI  125 (240)
                      .+......+-.+..+.||||+++|
T Consensus       119 ~~~~~~~~~L~~~~~~LkpgG~li  142 (251)
T d1wzna1         119 FDEEDLRKLFSKVAEALKPGGVFI  142 (251)
T ss_dssp             SCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             CChHHHHHHHHHHHHHcCCCcEEE
Confidence            111111223345667788887665

>d1q7ea_ c.123.1.1 (A:) Hypothetical protein YfdW {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: Hypothetical protein YfdW
species: Escherichia coli [TaxId: 562]

Probab=82.71  E-value=1.1  Score=37.61  Aligned_cols=96  Identities=17%  Similarity=0.133  Sum_probs=64.6

Q ss_pred             ccCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCC-CChh-------------HHHhc--Ccee----------cCCH
Q 026360           33 DLEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK-MDPQ-------------LEKET--GAKF----------EEDL   86 (240)
Q Consensus        33 ~l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~-~~~~-------------~~~~~--g~~~----------~~~l   86 (240)
                      .|.|-+|.=++-...|-.+++.|..+|++|+=+.+.. -...             .+...  |-+.          ..-+
T Consensus         4 PL~GirVld~~~~~agp~~~~~Lad~GAeVIkvE~p~~gd~~R~~~~~~~~~~s~~~~~~nr~K~si~lDL~~~~g~~~~   83 (417)
T d1q7ea_           4 PLQGIKVLDFTGVQSGPSCTQMLAWFGADVIKIERPGVGDVTRHQLRDIPDIDALYFTMLNSNKRSIELNTKTAEGKEVM   83 (417)
T ss_dssp             TTTTCEEEECCCTTHHHHHHHHHHHTTCEEEEEECTTTCCGGGTTTCSSTTSCCHHHHTTCTTCEEEECCTTSHHHHHHH
T ss_pred             CCCCCEEEEcCChhHHHHHHHHHHHhCCeEEEECCCCCCCchhccCCCCCCCccHHHHHhCCCCeEEEEeCcCHHHHHHH
Confidence            5899999988888889999999999999999988521 1100             11111  1111          1124


Q ss_pred             HhhcCcCCEEEEcCCCChhhhhcccHHHHccCCCCCEEEEcC
Q 026360           87 DTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNA  128 (240)
Q Consensus        87 ~ell~~aDiVvl~lp~~~~t~~~i~~~~l~~mk~gailIN~s  128 (240)
                      .+|+++||+|+-..+-..--+-=++.+.++...|+-+.+.++
T Consensus        84 ~~Li~~aDv~i~n~~pg~~~rlGl~~~~l~~~nP~lI~~sis  125 (417)
T d1q7ea_          84 EKLIREADILVENFHPGAIDHMGFTWEHIQEINPRLIFGSIK  125 (417)
T ss_dssp             HHHHHHCSEEEECCCC-------CCHHHHHHHCTTCEEEEEE
T ss_pred             HHHHhcCcccEeccCCCcHhhcCCCHHHHHhhCCCEEEEeee
Confidence            479999999998876333333346888899999999998885

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=82.69  E-value=0.16  Score=37.49  Aligned_cols=41  Identities=12%  Similarity=0.095  Sum_probs=29.4

Q ss_pred             cCCCeEEEEccChHHHHHHHHhccCCCEEEEEcCCCCChhHHH
Q 026360           34 LEGKTVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEK   76 (240)
Q Consensus        34 l~g~~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~~~~~~~~   76 (240)
                      ..|++|..+|+|. |+ .+..|...|++|+++|.++...+.++
T Consensus        19 ~~~~rvLd~GCG~-G~-~a~~la~~G~~V~gvD~S~~~i~~a~   59 (201)
T d1pjza_          19 VPGARVLVPLCGK-SQ-DMSWLSGQGYHVVGAELSEAAVERYF   59 (201)
T ss_dssp             CTTCEEEETTTCC-SH-HHHHHHHHCCEEEEEEECHHHHHHHH
T ss_pred             CCCCEEEEecCcC-CH-HHHHHHHcCCceEeecccHHHHHHHH
Confidence            3689999999986 44 33455556999999998765444443

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=82.52  E-value=0.56  Score=36.68  Aligned_cols=30  Identities=17%  Similarity=0.226  Sum_probs=28.2

Q ss_pred             EEEEccChHHHHHHHHhccCCCEEEEEcCC
Q 026360           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRV   68 (240)
Q Consensus        39 vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~   68 (240)
                      +.|||.|..|...|..+...|.+|..+++.
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~~V~liE~~   33 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNAKVALVEKS   33 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            679999999999999999999999999864

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.23  E-value=0.37  Score=42.58  Aligned_cols=38  Identities=18%  Similarity=0.141  Sum_probs=33.4

Q ss_pred             cccCCCeEEEEccChHHHHHHHHhccCCC-EEEEEcCCC
Q 026360           32 YDLEGKTVGTVGCGRIGKLLLQRLKPFNC-NLLYHDRVK   69 (240)
Q Consensus        32 ~~l~g~~vgIIG~G~iG~~~A~~l~~~G~-~V~~~d~~~   69 (240)
                      ..|.+.+|.|||+|.+|..+|+.|...|. +++++|...
T Consensus        21 ~~L~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~   59 (529)
T d1yova1          21 EALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQ   59 (529)
T ss_dssp             HHHHHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSB
T ss_pred             HHHhCCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCc
Confidence            46899999999999999999999998887 588888654

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=82.18  E-value=0.62  Score=37.10  Aligned_cols=33  Identities=18%  Similarity=0.122  Sum_probs=29.0

Q ss_pred             CCeEEEEc-cChHHHHHHHHhccCCCEEEEEcCC
Q 026360           36 GKTVGTVG-CGRIGKLLLQRLKPFNCNLLYHDRV   68 (240)
Q Consensus        36 g~~vgIIG-~G~iG~~~A~~l~~~G~~V~~~d~~   68 (240)
                      -|+|.|.| .|-||+.+++.|...|..|++.+..
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~   35 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTR   35 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCc
Confidence            36899999 6999999999999999999888754

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=81.03  E-value=1.1  Score=34.01  Aligned_cols=30  Identities=30%  Similarity=0.434  Sum_probs=22.5

Q ss_pred             CeEEEEccChHHHHHHHHhccC-----CCEEEEEc
Q 026360           37 KTVGTVGCGRIGKLLLQRLKPF-----NCNLLYHD   66 (240)
Q Consensus        37 ~~vgIIG~G~iG~~~A~~l~~~-----G~~V~~~d   66 (240)
                      .+|||=|+|+||+.+.+.+...     ..+|.+.+
T Consensus         3 ikigINGFGRIGR~vlR~~~~~~~~~~~i~iv~In   37 (190)
T d1k3ta1           3 IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVV   37 (190)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCBTTTEEEEEEE
T ss_pred             eEEEEECCChHHHHHHHHHHHcCCCCCCeEEEEEe
Confidence            4899999999999999876432     34666544

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=80.70  E-value=0.54  Score=35.24  Aligned_cols=30  Identities=13%  Similarity=0.153  Sum_probs=28.0

Q ss_pred             EEEEccChHHHHHHHHhccCCCEEEEEcCC
Q 026360           39 VGTVGCGRIGKLLLQRLKPFNCNLLYHDRV   68 (240)
Q Consensus        39 vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~   68 (240)
                      |.|||.|.-|...|..+...|.+|.+++..
T Consensus         6 viIIGgGpAGl~aA~~aar~G~~V~viE~~   35 (229)
T d3lada1           6 VIVIGAGPGGYVAAIKSAQLGLKTALIEKY   35 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEEecc
Confidence            789999999999999999999999999864

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.42  E-value=0.51  Score=37.16  Aligned_cols=38  Identities=18%  Similarity=0.182  Sum_probs=31.4

Q ss_pred             ccCCCeEEEEcc-ChHHHHHHHHhcc---CCCEEEEEcCCCC
Q 026360           33 DLEGKTVGTVGC-GRIGKLLLQRLKP---FNCNLLYHDRVKM   70 (240)
Q Consensus        33 ~l~g~~vgIIG~-G~iG~~~A~~l~~---~G~~V~~~d~~~~   70 (240)
                      .|.||.+-|-|. +.||+++|+.|..   .|++|++.+|+..
T Consensus         3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~   44 (259)
T d1oaaa_           3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSES   44 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHH
Confidence            478988888786 5899999999864   6999999998653

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=80.17  E-value=0.77  Score=36.90  Aligned_cols=32  Identities=13%  Similarity=0.201  Sum_probs=29.4

Q ss_pred             eEEEEccChHHHHHHHHhccCCCEEEEEcCCC
Q 026360           38 TVGTVGCGRIGKLLLQRLKPFNCNLLYHDRVK   69 (240)
Q Consensus        38 ~vgIIG~G~iG~~~A~~l~~~G~~V~~~d~~~   69 (240)
                      -|.|||.|..|-..|..|...|.+|++++..+
T Consensus        25 DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~   56 (322)
T d1d4ca2          25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEP   56 (322)
T ss_dssp             SEEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            38999999999999999999999999999754