Citrus Sinensis ID: 026367

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQSAGGSHVNANNNCKAATEKAIKPAKDVQNVKDKSAKAVNPSSSFTDAEKFVEEILDRISAKLLSETKEGNIAQQGQELGNEIANRLRKCCYPELKNLATIFKNTAYTQGFHAGKASSLTQCPRT
Secondary Structure (PSIPRED)
cccHHHHHHHHcccccccccccccccccccEEEEEccccccccEEEEEcccccccEEEcHHHHHHHHHHcccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHccccccccHEEEEccccccEEEEEEHHHHccccEEEcccccccEEEEcHHHHHHHHHHHccccEEEEEcccccccccccccHHEEcccccEEcccccccccccccccccccccccccccccccEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccHccccccc
Coil and Loop (DISEMBL)
MAPEETMLEILkvplgsvtpfalvNESARDVALLLDKGFkaqercffhplsndmsislNTNDLDKFLKsigrdpayvdleanpavgkdqppdlaafvpsgstvlpdlpdpasavqsaggshvnannncKAATEkaikpakdvqnvkdksakavnpsssftdAEKFVEEILDRISAKLLSETKEGNIAQQGQELGNEIANRLRKCCYPELKNLATIFKNTaytqgfhagkassltqcprt
Flexible Loop (DISEMBL)
MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFhplsndmsisLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQSAGGSHVNANNNCKAATEkaikpakdvqnvkdksakavnpsssftdaeKFVEEILDRISAKLLSETKEGNIAQQGQELGNEIANRLRKCCYPELKNLATIFKNTAYTQGFhagkassltqcprt
Low Complexity Region (SEG)
MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQSAGGSHVNANNNCKAATEKAIKPAKDVQNVKDKSAKAVNPSSSFTDAEKFVEEILDRISAKLLSETKEGNIAQQGQELGNEIANRLRKCCYPELKNLATIFKNTAYTQGFHAGKASSLTQCPRT
Disordered region (IsUnstruct)
*******LEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDL*************************************************************************************FVEEILDRISA*****************LGNEIANRLRKCCYPELKNLATIFKNTAYTQGFHA************
Disordered Region (DISOPRED)
*APEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVD************************************************************************************EKFVEEILDRISAKLLSETKE*****Q**ELGNEIANRLRKCCYPELKNLATIFKNTAYTQGFHAGKA*********
Disordered Region (DISEMBL)
MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDP***********VNANNNCKAATEKAIKPAKD******************TDAEKFVEEILDRISAKLLSETKEGNIAQQGQELGNEIANRLRKCCYPELKNLATIFKNTAYTQGFHAG***********
Disordered Region (DISPRO)
MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLP*****************************************************FTDAEKFVEEILDRISAKLLSETKEGNIAQQGQELGNEIANRLRKCCYPELKNLATIFKNTAYTQGFH*************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQSAGGSHVNANNNCKAATEKAIKPAKDVQNVKDKSAKAVNPSSSFTDAEKFVEEILDRISAKLLSETKEGNIAQQGQELGNEIANRLRKCCYPELKNLATIFKNTAYTQGFHAGKASSLTQCPRT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	239	2.2.26 [Sep-21-2011]
A1A4Q2	171	Prolyl-tRNA synthetase as	yes	no	0.338	0.473	0.369	2e-07
A6NEY8	169	Putative prolyl-tRNA synt	yes	no	0.330	0.467	0.365	5e-07
Q6NRL0	168	Prolyl-tRNA synthetase as	N/A	no	0.330	0.470	0.365	8e-07
Q9D820	169	Prolyl-tRNA synthetase as	yes	no	0.330	0.467	0.353	2e-06

>sp|A1A4Q2|PRXD1_BOVIN Prolyl-tRNA synthetase associated domain-containing protein 1 OS=Bos taurus GN=PRORSD1 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 3/84 (3%)

Query: 1   MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGF--KAQERCFFHPLSNDMSISL 58
            A E  MLE LKV  G  TP AL  +   DV  +LD  F     E+ +FHP++N  ++ L
Sbjct: 89  FADEAAMLEKLKVGQGCATPLALFCDDG-DVKFVLDSAFLEGGHEKVYFHPMTNAATMGL 147

Query: 59  NTNDLDKFLKSIGRDPAYVDLEAN 82
           +  D   F+K+ G DP  ++ + N
Sbjct: 148 SPEDFLTFVKNTGHDPIILNFDKN 171

Bos taurus (taxid: 9913)

>sp|A6NEY8|PRXD1_HUMAN Putative prolyl-tRNA synthetase associated domain-containing protein 1 OS=Homo sapiens GN=PRORSD1P PE=5 SV=3

 Score = 54.7 bits (130), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 1   MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGF--KAQERCFFHPLSNDMSISL 58
            A E  MLE LKV  G  TP AL  +   DV  +LD  F     E+ +FHP++N  ++ L
Sbjct: 89  FADETAMLEKLKVGQGCATPLALFCDGG-DVKFVLDSAFLEGGHEKVYFHPMTNAATMGL 147

Query: 59  NTNDLDKFLKSIGRDPAYVDLE 80
           +  D   F+K  G DP  ++ +
Sbjct: 148 SPEDFLTFVKMTGHDPIILNFD 169

Homo sapiens (taxid: 9606)

>sp|Q6NRL0|PRXD1_XENLA Prolyl-tRNA synthetase associated domain-containing protein 1 OS=Xenopus laevis GN=prorsd1p PE=2 SV=1

 Score = 53.9 bits (128), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 1   MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGF--KAQERCFFHPLSNDMSISL 58
            A E +MLE LKV  G  TP AL  +   DV  +LD  F     ER +FHP++N  ++ +
Sbjct: 88  FADEASMLEKLKVGQGCATPLALFCDRG-DVQFVLDAQFLEGGYERVYFHPMTNAATLGM 146

Query: 59  NTNDLDKFLKSIGRDPAYVDLE 80
              +   FLK  G DP  +  +
Sbjct: 147 TPQEFVTFLKKTGHDPIIIHFD 168

Xenopus laevis (taxid: 8355)

>sp|Q9D820|PRXD1_MOUSE Prolyl-tRNA synthetase associated domain-containing protein 1 OS=Mus musculus GN=Prorsd1 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 1   MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGF--KAQERCFFHPLSNDMSISL 58
            A E  MLE LKV  G  TP +L  +   DV  +LD  F     E+ +FHP++N  ++ L
Sbjct: 89  FADETAMLEKLKVGQGCATPLSLFCDDG-DVKFVLDSAFLEGGHEKVYFHPMTNAATMGL 147

Query: 59  NTNDLDKFLKSIGRDPAYVDLE 80
           +  D   F+K+ G DP  ++ +
Sbjct: 148 SPEDFLIFVKATGHDPIILNFD 169

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
356515866	322	PREDICTED: uncharacterized protein LOC10	0.953	0.708	0.624	2e-75
356552652	320	PREDICTED: prolyl-tRNA synthetase associ	0.949	0.709	0.592	8e-71
217075807	329	unknown [Medicago truncatula]	0.966	0.702	0.584	6e-70
357461571	378	hypothetical protein MTR_3g072620 [Medic	0.966	0.611	0.584	9e-70
7271117	236	25.7 kDa protein [Cicer arietinum]	0.949	0.961	0.604	1e-69
388495642	329	unknown [Medicago truncatula]	0.966	0.702	0.580	2e-69
255545452	321	conserved hypothetical protein [Ricinus	0.953	0.710	0.592	3e-69
449524730	323	PREDICTED: proline--tRNA ligase-like [Cu	0.953	0.705	0.556	7e-68
359492751	320	PREDICTED: prolyl-tRNA synthetase associ	0.945	0.706	0.585	7e-68
449449737	323	PREDICTED: prolyl-tRNA synthetase associ	0.953	0.705	0.556	7e-68

>gi|356515866|ref|XP_003526618.1| PREDICTED: uncharacterized protein LOC100817904 [Glycine max]

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 143/229 (62%), Positives = 172/229 (75%), Gaps = 1/229 (0%)

Query: 1   MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNT 60
           MAPEE + E+L+VPLG VTPFALVNESARDV+LLLD+GFK+Q+ CFFHPLSNDMSISLN 
Sbjct: 86  MAPEEALGEVLQVPLGCVTPFALVNESARDVSLLLDQGFKSQKHCFFHPLSNDMSISLNA 145

Query: 61  NDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQS-AGG 119
            DLDKFLKSIGR+P+YVDLE NP VGKDQPPDLAA VPSGS VLPD P   S+ Q     
Sbjct: 146 CDLDKFLKSIGRNPSYVDLETNPTVGKDQPPDLAALVPSGSIVLPDQPQKQSSSQVPKDA 205

Query: 120 SHVNANNNCKAATEKAIKPAKDVQNVKDKSAKAVNPSSSFTDAEKFVEEILDRISAKLLS 179
           +HV+ +N     + K +KP+   +N K   AK VN S SF DA +FVEEIL + S  LLS
Sbjct: 206 NHVSVDNGANTVSAKVVKPSSGGKNTKGTPAKNVNSSGSFADAGQFVEEILQKTSQLLLS 265

Query: 180 ETKEGNIAQQGQELGNEIANRLRKCCYPELKNLATIFKNTAYTQGFHAG 228
           E K+ NI   G++LG  ++++L+K    E K+LA IFKNTAYT+GFHAG
Sbjct: 266 EVKDENIKLHGEQLGTVLSDKLQKNLNAEFKSLAMIFKNTAYTEGFHAG 314

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552652|ref|XP_003544677.1| PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1-like [Glycine max]

 Score =  272 bits (696), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 135/228 (59%), Positives = 165/228 (72%), Gaps = 1/228 (0%)

Query: 1   MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNT 60
           M P E + EIL+V LG VTPFA+VNESARDV+LLLD+GFK QE CFFHPLSNDM+IS+N+
Sbjct: 86  MVPSEALGEILQVSLGCVTPFAVVNESARDVSLLLDQGFKTQEFCFFHPLSNDMTISINS 145

Query: 61  NDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQSAGGS 120
           NDLDKFLKSIGRDP+YVD EANP VGKDQPPDLAA VPSG+  LPD P+   + Q   G+
Sbjct: 146 NDLDKFLKSIGRDPSYVDFEANPPVGKDQPPDLAALVPSGTINLPDQPEKQPSSQPTEGN 205

Query: 121 HVNANNNCKAATEKAIKPAKDVQNVKDKSAKAVNPSSSFTDAEKFVEEILDRISAKLLSE 180
           HV+  +  K  + K +K     +N K+K+    + S +F D E FVEEIL + S  LLSE
Sbjct: 206 HVSV-DEPKIISAKVVKSCVSGKNTKEKAVNKAHSSGNFADVELFVEEILHKTSRLLLSE 264

Query: 181 TKEGNIAQQGQELGNEIANRLRKCCYPELKNLATIFKNTAYTQGFHAG 228
            KE  I Q G+ LG  +++ LRK    +L+NL  IFKNTAYT+GFHAG
Sbjct: 265 IKEDTITQHGENLGTVVSDNLRKGLSSDLENLTMIFKNTAYTEGFHAG 312

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075807|gb|ACJ86263.1| unknown [Medicago truncatula]

 Score =  269 bits (688), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 138/236 (58%), Positives = 163/236 (69%), Gaps = 5/236 (2%)

Query: 1   MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNT 60
           MAPEE + E+L+VPLG VTPFA+VNESARDV+LLLD+GFK QE CFFHPLSNDMSISLN 
Sbjct: 84  MAPEEALGELLQVPLGCVTPFAVVNESARDVSLLLDQGFKTQEHCFFHPLSNDMSISLNV 143

Query: 61  NDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQSAGGS 120
             LDKFLKSIGRDP+YVDLEANPAVGKDQPPDLAA VPS S +LPD P   S+ +     
Sbjct: 144 RGLDKFLKSIGRDPSYVDLEANPAVGKDQPPDLAALVPSSSIILPDQPGKQSSTEVPKNE 203

Query: 121 H-----VNANNNCKAATEKAIKPAKDVQNVKDKSAKAVNPSSSFTDAEKFVEEILDRISA 175
           +     V+ +   K    K +KP+    N K    K V PS SF DA K VEEIL + S 
Sbjct: 204 NLVSVAVSVDTKTKTVPAKVVKPSVAGNNSKGTPEKTVQPSGSFADAGKLVEEILHKTSK 263

Query: 176 KLLSETKEGNIAQQGQELGNEIANRLRKCCYPELKNLATIFKNTAYTQGFHAGKAS 231
            LLSE  E  I   G++LG  ++++L+K    +LKNLA  FKNTAYT+GF  G  S
Sbjct: 264 ILLSEINEETIKMHGEQLGTALSDKLQKNLTSDLKNLAMTFKNTAYTEGFQDGLQS 319

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461571|ref|XP_003601067.1| hypothetical protein MTR_3g072620 [Medicago truncatula] gi|355490115|gb|AES71318.1| hypothetical protein MTR_3g072620 [Medicago truncatula]

 Score =  269 bits (687), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 138/236 (58%), Positives = 163/236 (69%), Gaps = 5/236 (2%)

Query: 1   MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNT 60
           MAPEE + E+L+VPLG VTPFA+VNESARDV+LLLD+GFK QE CFFHPLSNDMSISLN 
Sbjct: 133 MAPEEALGELLQVPLGCVTPFAVVNESARDVSLLLDQGFKTQEHCFFHPLSNDMSISLNV 192

Query: 61  NDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQSAGGS 120
             LDKFLKSIGRDP+YVDLEANPAVGKDQPPDLAA VPS S +LPD P   S+ +     
Sbjct: 193 RGLDKFLKSIGRDPSYVDLEANPAVGKDQPPDLAALVPSSSIILPDQPGKQSSTEVPKNE 252

Query: 121 H-----VNANNNCKAATEKAIKPAKDVQNVKDKSAKAVNPSSSFTDAEKFVEEILDRISA 175
           +     V+ +   K    K +KP+    N K    K V PS SF DA K VEEIL + S 
Sbjct: 253 NLVSVAVSVDTKTKTVPAKVVKPSVAGNNSKGTPEKTVQPSGSFADAGKLVEEILHKTSK 312

Query: 176 KLLSETKEGNIAQQGQELGNEIANRLRKCCYPELKNLATIFKNTAYTQGFHAGKAS 231
            LLSE  E  I   G++LG  ++++L+K    +LKNLA  FKNTAYT+GF  G  S
Sbjct: 313 ILLSEINEETIKMHGEQLGTALSDKLQKNLTSDLKNLAMTFKNTAYTEGFQDGLQS 368

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7271117|emb|CAB81546.1| 25.7 kDa protein [Cicer arietinum]

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 139/230 (60%), Positives = 163/230 (70%), Gaps = 3/230 (1%)

Query: 1   MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNT 60
           MAPEE + EIL+V LG VTPFA+VNESARDV+LLLD+GFK QE CFFHPLSNDMSISLN 
Sbjct: 1   MAPEEALAEILQVSLGCVTPFAVVNESARDVSLLLDQGFKTQEHCFFHPLSNDMSISLNV 60

Query: 61  NDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASA--VQSAG 118
            DLD FLKSIGRDP+YVDLEANPAVGKDQPPDLAA VPSGS VLPD P   S+  V    
Sbjct: 61  RDLDTFLKSIGRDPSYVDLEANPAVGKDQPPDLAALVPSGSIVLPDQPGKQSSAEVPPRD 120

Query: 119 GSHVNANNNCKAATEKAIKPAKDVQNVKDKSAKAVNPSSSFTDAEKFVEEILDRISAKLL 178
           G+ V+ +N  K    K +KP     N K    K V  S S+ D  + VEEIL + S  LL
Sbjct: 121 GNIVSVDNKSKTVPAKVVKPLVG-NNSKGTLDKNVQSSRSYADVGQLVEEILHKTSKLLL 179

Query: 179 SETKEGNIAQQGQELGNEIANRLRKCCYPELKNLATIFKNTAYTQGFHAG 228
           SE  E  I   G++LG  ++++L+K    + KNLA +FKNTAYT+GFHAG
Sbjct: 180 SEINEETIKIHGEQLGTTVSDKLQKHLSSDFKNLAMMFKNTAYTEGFHAG 229

Source: Cicer arietinum

Species: Cicer arietinum

Genus: Cicer

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495642|gb|AFK35887.1| unknown [Medicago truncatula]

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 137/236 (58%), Positives = 162/236 (68%), Gaps = 5/236 (2%)

Query: 1   MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNT 60
           MAPEE + E+L+VPLG VTPFA+VNESARDV+LLLD+GFK QE CFFHPLSNDMSISLN 
Sbjct: 84  MAPEEALGELLQVPLGCVTPFAVVNESARDVSLLLDQGFKTQEHCFFHPLSNDMSISLNV 143

Query: 61  NDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQSAGGS 120
             LDKFLKSIGRDP+YVDLEANPAVGKDQPPDLAA VPS S +LPD P   S+ +     
Sbjct: 144 RGLDKFLKSIGRDPSYVDLEANPAVGKDQPPDLAALVPSSSIILPDQPGKQSSTEVPKNE 203

Query: 121 H-----VNANNNCKAATEKAIKPAKDVQNVKDKSAKAVNPSSSFTDAEKFVEEILDRISA 175
           +     V+ +   K    K +KP+    N K    K V PS SF DA K VEEIL + S 
Sbjct: 204 NLVSVAVSVDTKTKTVPAKVVKPSVAGNNSKGTPEKTVQPSGSFADAGKLVEEILHKTSK 263

Query: 176 KLLSETKEGNIAQQGQELGNEIANRLRKCCYPELKNLATIFKNTAYTQGFHAGKAS 231
            L SE  E  I   G++LG  ++++L+K    +LKNLA  FKNTAYT+GF  G  S
Sbjct: 264 ILFSEINEETIKMHGEQLGTALSDKLQKNLTSDLKNLAMTFKNTAYTEGFQDGLQS 319

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545452|ref|XP_002513786.1| conserved hypothetical protein [Ricinus communis] gi|223546872|gb|EEF48369.1| conserved hypothetical protein [Ricinus communis]

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 135/228 (59%), Positives = 169/228 (74%)

Query: 1   MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNT 60
           MAPEE + EIL+VPLG VTPFA++NESAR V+LLLDKGF AQE CFFHPLSN+MSISL+ 
Sbjct: 86  MAPEEALAEILQVPLGCVTPFAVMNESARHVSLLLDKGFIAQEYCFFHPLSNNMSISLHA 145

Query: 61  NDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQSAGGS 120
            DLDKFLKSIGR+P+YVDLEANP VGKDQPPDLA FVPS ST+L D P   + +Q    +
Sbjct: 146 RDLDKFLKSIGREPSYVDLEANPPVGKDQPPDLAIFVPSDSTILSDPPQKEAPLQGHNKN 205

Query: 121 HVNANNNCKAATEKAIKPAKDVQNVKDKSAKAVNPSSSFTDAEKFVEEILDRISAKLLSE 180
            ++A+    AA  K  K    V+NV+ +SA   +  S F+DA+  VEEIL++ SA LLSE
Sbjct: 206 PISADKKSIAAAVKTTKLPSTVKNVQGESAVPAHQRSVFSDADLLVEEILNKTSALLLSE 265

Query: 181 TKEGNIAQQGQELGNEIANRLRKCCYPELKNLATIFKNTAYTQGFHAG 228
            KE +I + G+ LG  +A+ +RK    +LK+LA +FKNTAY QGF+AG
Sbjct: 266 IKEDSIKEHGEHLGTVVADSIRKRLSSDLKSLAIMFKNTAYAQGFYAG 313

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449524730|ref|XP_004169374.1| PREDICTED: proline--tRNA ligase-like [Cucumis sativus]

 Score =  263 bits (671), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 128/230 (55%), Positives = 168/230 (73%), Gaps = 2/230 (0%)

Query: 1   MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNT 60
           MAPEE + E LKV LG VTPFAL+N++ARDVALLLD+GFK QE CFFHPLSN+ SIS+NT
Sbjct: 89  MAPEEALGEKLKVSLGCVTPFALINKTARDVALLLDQGFKGQEFCFFHPLSNETSISINT 148

Query: 61  NDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQSAGGS 120
           ++LDKFL+SIGRDP+YVDLEANP+VGKDQPPDLA  VPS S+++PD P+  S+   +  +
Sbjct: 149 SNLDKFLQSIGRDPSYVDLEANPSVGKDQPPDLAGLVPSVSSLVPDTPEKVSSRPDSNEN 208

Query: 121 HVNANNNCKAATEKAIKPAKDVQNVKDKSAKAVNPSSSFTDAEKFVEEILDRISAKLLSE 180
           H   +   KA     +KP+  V+  KDK    V P  ++ + EKFVEEILD+ SA +LS+
Sbjct: 209 HGVTDKKSKAVAANTVKPSTTVKVGKDKPTPKVQP--TYANVEKFVEEILDKTSAIVLSQ 266

Query: 181 TKEGNIAQQGQELGNEIANRLRKCCYPELKNLATIFKNTAYTQGFHAGKA 230
             E  + + G+ LG  ++N +++    EL NL+ IFKNTAYT+GFHAG +
Sbjct: 267 LTEETVNKHGEHLGAAVSNSIKRHLSSELNNLSMIFKNTAYTEGFHAGSS 316

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492751|ref|XP_002284446.2| PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1-like [Vitis vinifera] gi|302141840|emb|CBI19043.3| unnamed protein product [Vitis vinifera]

 Score =  263 bits (671), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 133/227 (58%), Positives = 163/227 (71%), Gaps = 1/227 (0%)

Query: 1   MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNT 60
           MAPEE + EIL+V LG VTPFALVNESAR V+L LD+GFK ++ CFFHPLSNDMSI++  
Sbjct: 86  MAPEEALGEILQVSLGCVTPFALVNESARHVSLFLDQGFKTKDFCFFHPLSNDMSIAIKA 145

Query: 61  NDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQSAGGS 120
            DLDKFLKSIG+DP+YVDLEANP VGKDQPPDLA  VPS + VL D P+  S        
Sbjct: 146 CDLDKFLKSIGKDPSYVDLEANPTVGKDQPPDLAGLVPSDAIVLQDPPE-KSVSSGPTEK 204

Query: 121 HVNANNNCKAATEKAIKPAKDVQNVKDKSAKAVNPSSSFTDAEKFVEEILDRISAKLLSE 180
           H + +N    A  K +KP+ +VQ VK+K   +V+  SSFTD   FVEEILD+ SA +LSE
Sbjct: 205 HASVDNKSSVAAAKTVKPSNNVQKVKEKPPISVHQLSSFTDPGHFVEEILDKTSAIVLSE 264

Query: 181 TKEGNIAQQGQELGNEIANRLRKCCYPELKNLATIFKNTAYTQGFHA 227
             E  I Q G+ LG  +++ +RK    +LKNLA I+KNTAYT+GFHA
Sbjct: 265 ITEDAIKQHGEHLGAVLSDSIRKRLSLDLKNLAIIYKNTAYTEGFHA 311

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449737|ref|XP_004142621.1| PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1-like [Cucumis sativus]

 Score =  262 bits (670), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 128/230 (55%), Positives = 168/230 (73%), Gaps = 2/230 (0%)

Query: 1   MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNT 60
           MAPEE + E LKV LG VTPFAL+N++ARDVALLLD+GFK QE CFFHPLSN+ SIS+NT
Sbjct: 89  MAPEEALGEKLKVSLGCVTPFALINKTARDVALLLDQGFKGQEFCFFHPLSNETSISINT 148

Query: 61  NDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQSAGGS 120
           ++LDKFL+SIGRDP+YVDLEANP+VGKDQPPDLA  VPS S+++PD P+  S+   +  +
Sbjct: 149 SNLDKFLQSIGRDPSYVDLEANPSVGKDQPPDLAGLVPSVSSLVPDTPEKVSSHPDSNEN 208

Query: 121 HVNANNNCKAATEKAIKPAKDVQNVKDKSAKAVNPSSSFTDAEKFVEEILDRISAKLLSE 180
           H   +   KA     +KP+  V+  KDK    V P  ++ + EKFVEEILD+ SA +LS+
Sbjct: 209 HGVTDKKSKAVAANTVKPSTTVKVGKDKPTPKVQP--TYANVEKFVEEILDKTSAIVLSQ 266

Query: 181 TKEGNIAQQGQELGNEIANRLRKCCYPELKNLATIFKNTAYTQGFHAGKA 230
             E  + + G+ LG  ++N +++    EL NL+ IFKNTAYT+GFHAG +
Sbjct: 267 LTEETVNKHGEHLGAAVSNSIKRHLSSELNNLSMIFKNTAYTEGFHAGSS 316

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
TAIR|locus:2826697	308	AT1G44835 "AT1G44835" [Arabido	0.899	0.698	0.543	1.3e-54
UNIPROTKB|F1NDD4	189	LOC421212 "Uncharacterized pro	0.326	0.412	0.419	3.1e-10
UNIPROTKB|F1SQK5	171	LOC100514282 "Uncharacterized	0.334	0.467	0.373	4.6e-09
UNIPROTKB|A1A4Q2	171	PRORSD1 "Prolyl-tRNA synthetas	0.334	0.467	0.373	6.1e-09
UNIPROTKB|E2R3A2	172	E2R3A2 "Uncharacterized protei	0.334	0.465	0.361	2.3e-08
UNIPROTKB|F6Y5M8	171	LOC100856725 "Uncharacterized	0.334	0.467	0.361	2.3e-08
RGD|1308179	169	Prorsd1 "prolyl-tRNA synthetas	0.326	0.461	0.370	3e-08
UNIPROTKB|A6NEY8	169	PRORSD1P "Putative prolyl-tRNA	0.326	0.461	0.370	3.9e-08
MGI|MGI:1915189	169	Prorsd1 "prolyl-tRNA synthetas	0.326	0.461	0.358	8.7e-08
UNIPROTKB|Q9L4Q7	164	proX "Prolyl-tRNA editing prot	0.326	0.475	0.282	6.1e-05

TAIR|locus:2826697 AT1G44835 "AT1G44835" [Arabidopsis thaliana (taxid:3702)]

 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 124/228 (54%), Positives = 158/228 (69%)

Query:     1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNT 60
             MAPEE + E+L+V LG VTPFA+VNESARDV+LLLD+ FK Q RC FHPLSND+S+SLNT
Sbjct:    86 MAPEEALGELLQVSLGCVTPFAVVNESARDVSLLLDQKFKNQTRCIFHPLSNDVSVSLNT 145

Query:    61 NDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQSAGGS 120
               LDKFLKSIGRDP YVDLEANP VGKDQ PDLA  VPS S ++P++P+  S+ Q     
Sbjct:   146 LGLDKFLKSIGRDPVYVDLEANPVVGKDQAPDLAVCVPSNSVIVPEIPNQTSSTQIPLPK 205

Query:   121 HVNANNNCKAATEKAIKPAKDVQNVKDKSAKAVNPSSSFTDAEKFVEEILDRISAKLLSE 180
              V+A      A+ K  KPA  V++V + SA    PS+ + + EKFV+EILD+ SA LLSE
Sbjct:   206 SVSAEVK-PVASAKTSKPACKVKSVAENSA----PSA-YKNPEKFVQEILDKTSALLLSE 259

Query:   181 TKEGNIAQQGQELGNEIANRLRKCCYPELKNLATIFKNTAYTQGFHAG 228
               +G   +        +A  LRK    EL +L+ ++KN+AY +GF+AG
Sbjct:   260 VAKGECVEA-------LAETLRKRLTSELTHLSIMYKNSAYAEGFYAG 300

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|F1NDD4 LOC421212 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 146 (56.5 bits), Expect = 3.1e-10, P = 3.1e-10
 Identities = 34/81 (41%), Positives = 46/81 (56%)

Query:     2 APEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFK--AQERCFFHPLSNDMSISLN 59
             A E  MLE L+V  G  TP AL  +   DV L+LD GF     E+ +FHP++N  ++ L+
Sbjct:   106 ADENAMLEKLQVGQGCATPLALFCDHG-DVRLVLDAGFLEGGHEKVYFHPMTNGATMGLS 164

Query:    60 TNDLDKFLKSIGRDPAYVDLE 80
               D  KF+KS G DP  V  +
Sbjct:   165 PEDFLKFVKSTGHDPIVVHFD 185

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

UNIPROTKB|F1SQK5 LOC100514282 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 136 (52.9 bits), Expect = 4.6e-09, P = 4.6e-09
 Identities = 31/83 (37%), Positives = 45/83 (54%)

Query:     2 APEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFK--AQERCFFHPLSNDMSISLN 59
             A E  MLE LKV  G  TP AL  +   DV  +LD  F     E+ +FHP++N  ++ L+
Sbjct:    90 ADETAMLEKLKVVQGCATPLALFCDDG-DVKFVLDSAFLEGGHEKVYFHPMTNTATMGLS 148

Query:    60 TNDLDKFLKSIGRDPAYVDLEAN 82
               D   F+K+ G DP  ++ + N
Sbjct:   149 PEDFLTFVKNTGHDPIILNFDKN 171

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

UNIPROTKB|A1A4Q2 PRORSD1 "Prolyl-tRNA synthetase associated domain-containing protein 1" [Bos taurus (taxid:9913)]

 Score = 135 (52.6 bits), Expect = 6.1e-09, P = 6.1e-09
 Identities = 31/83 (37%), Positives = 45/83 (54%)

Query:     2 APEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFK--AQERCFFHPLSNDMSISLN 59
             A E  MLE LKV  G  TP AL  +   DV  +LD  F     E+ +FHP++N  ++ L+
Sbjct:    90 ADEAAMLEKLKVGQGCATPLALFCDDG-DVKFVLDSAFLEGGHEKVYFHPMTNAATMGLS 148

Query:    60 TNDLDKFLKSIGRDPAYVDLEAN 82
               D   F+K+ G DP  ++ + N
Sbjct:   149 PEDFLTFVKNTGHDPIILNFDKN 171

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

UNIPROTKB|E2R3A2 E2R3A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 130 (50.8 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 30/83 (36%), Positives = 43/83 (51%)

Query:     2 APEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFK--AQERCFFHPLSNDMSISLN 59
             A E  ML+ LKV  G  TP AL  +   DV  +LD  F     E+ +FHP++N  ++ L+
Sbjct:    90 ADETAMLDKLKVGQGCATPLALFCDDG-DVKFVLDSAFLEGGHEKVYFHPMTNSATMGLS 148

Query:    60 TNDLDKFLKSIGRDPAYVDLEAN 82
               D   F+K  G DP  +  + N
Sbjct:   149 PEDFLTFVKKTGHDPIILRFDEN 171

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

UNIPROTKB|F6Y5M8 LOC100856725 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 130 (50.8 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 30/83 (36%), Positives = 43/83 (51%)

Query:     2 APEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFK--AQERCFFHPLSNDMSISLN 59
             A E  ML+ LKV  G  TP AL  +   DV  +LD  F     E+ +FHP++N  ++ L+
Sbjct:    90 ADETAMLDKLKVGQGCATPLALFCDDG-DVKFVLDSAFLEGGHEKVYFHPMTNSATMGLS 148

Query:    60 TNDLDKFLKSIGRDPAYVDLEAN 82
               D   F+K  G DP  +  + N
Sbjct:   149 PEDFLTFVKKTGHDPIILRFDEN 171

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

RGD|1308179 Prorsd1 "prolyl-tRNA synthetase associated domain containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 129 (50.5 bits), Expect = 3.0e-08, P = 3.0e-08
 Identities = 30/81 (37%), Positives = 44/81 (54%)

Query:     2 APEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFK--AQERCFFHPLSNDMSISLN 59
             A E  MLE LKV  G  TP AL  +   DV  +LD  F     E+ +FHP++N  ++ L+
Sbjct:    90 ADETAMLEKLKVGQGCATPLALFCDDG-DVKFVLDSAFLEGGHEKVYFHPMTNAATMGLS 148

Query:    60 TNDLDKFLKSIGRDPAYVDLE 80
               D   F+K+ G DP  ++ +
Sbjct:   149 PEDFLVFVKATGHDPIILNFD 169

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

UNIPROTKB|A6NEY8 PRORSD1P "Putative prolyl-tRNA synthetase associated domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 128 (50.1 bits), Expect = 3.9e-08, P = 3.9e-08
 Identities = 30/81 (37%), Positives = 43/81 (53%)

Query:     2 APEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFK--AQERCFFHPLSNDMSISLN 59
             A E  MLE LKV  G  TP AL  +   DV  +LD  F     E+ +FHP++N  ++ L+
Sbjct:    90 ADETAMLEKLKVGQGCATPLALFCDGG-DVKFVLDSAFLEGGHEKVYFHPMTNAATMGLS 148

Query:    60 TNDLDKFLKSIGRDPAYVDLE 80
               D   F+K  G DP  ++ +
Sbjct:   149 PEDFLTFVKMTGHDPIILNFD 169

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

MGI|MGI:1915189 Prorsd1 "prolyl-tRNA synthetase domain containing 1" [Mus musculus (taxid:10090)]

 Score = 125 (49.1 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 29/81 (35%), Positives = 44/81 (54%)

Query:     2 APEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFK--AQERCFFHPLSNDMSISLN 59
             A E  MLE LKV  G  TP +L  +   DV  +LD  F     E+ +FHP++N  ++ L+
Sbjct:    90 ADETAMLEKLKVGQGCATPLSLFCDDG-DVKFVLDSAFLEGGHEKVYFHPMTNAATMGLS 148

Query:    60 TNDLDKFLKSIGRDPAYVDLE 80
               D   F+K+ G DP  ++ +
Sbjct:   149 PEDFLIFVKATGHDPIILNFD 169

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9L4Q7 proX "Prolyl-tRNA editing protein ProX" [Clostridium sticklandii DSM 519 (taxid:499177)]

 Score = 110 (43.8 bits), Expect = 6.1e-05, P = 6.1e-05
 Identities = 22/78 (28%), Positives = 43/78 (55%)

Query:     2 APEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTN 61
             A E+ + + LK+  G+V+PF ++N+   +V ++ DK    +     HP  N  ++ L+  
Sbjct:    87 ASEDRLQKYLKLTKGAVSPFGVLNDETAEVEVVFDKNLVGRSCVAVHPNDNSATVVLSYE 146

Query:    62 DLDKFLKSIGRDPAYVDL 79
             DL+K +K+ G     ++L
Sbjct:   147 DLEKIVKANGNTFKAIEL 164

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IDA

GO:0006450 "regulation of translational fidelity" evidence=IDA

GO:0043906 "Ala-tRNA(Pro) hydrolase activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	239
cd04335	156	cd04335, PrdX_deacylase, This CD includes bacteria	7e-30
COG3760	164	COG3760, COG3760, Uncharacterized conserved protei	4e-17
pfam04073	122	pfam04073, YbaK, YbaK / prolyl-tRNA synthetases as	1e-09
cd04332	136	cd04332, YbaK_like, YbaK-like	4e-09

>gnl|CDD|239827 cd04335, PrdX_deacylase, This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences

 Score =  108 bits (273), Expect = 7e-30
 Identities = 36/77 (46%), Positives = 50/77 (64%)

Query: 1   MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNT 60
            A EE + E L V  GSVTPFAL+N+   DV ++LDK    +ER  FHPL+N  ++ ++T
Sbjct: 80  FASEERLEEKLGVTPGSVTPFALINDKENDVQVVLDKDLLEEERVGFHPLTNTATVGIST 139

Query: 61  NDLDKFLKSIGRDPAYV 77
            DL KFL++ G +P  V
Sbjct: 140 EDLLKFLEATGHEPTVV 156

The C. sticklandii PrdX protein, a homolog of the YbaK and ProX proteins, and the prolyl-tRNA synthetase-editing domain (ProRS-INS), specifically hydrolyzes Ala-tRNA(Pro). In this CD, many of the eukaryotic editing domains are N-terminal and cis-acting, expressed from a multidomain ProRS, however, similar to the bacterial PrdX, the mammalian, amphibian, and echinoderm PrdX-like proteins are trans-acting, single-domain proteins. Length = 156

>gnl|CDD|226283 COG3760, COG3760, Uncharacterized conserved protein [Function unknown]

 Score = 75.5 bits (186), Expect = 4e-17
 Identities = 29/80 (36%), Positives = 47/80 (58%)

Query: 2   APEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTN 61
              E ++E L V  GSVT F L+N++   V ++LD+     +   FHPLSN  + S+ + 
Sbjct: 85  GSPERLMEYLGVIPGSVTVFGLINDTENRVKIVLDQALMDDDLINFHPLSNTATTSIASA 144

Query: 62  DLDKFLKSIGRDPAYVDLEA 81
           DL +FL++ G +P  +D+ A
Sbjct: 145 DLIRFLEATGHEPRILDVSA 164

Length = 164

>gnl|CDD|217873 pfam04073, YbaK, YbaK / prolyl-tRNA synthetases associated domain

 Score = 54.1 bits (131), Expect = 1e-09
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 1   MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNT 60
           +A EE + E+  V  G+V+PF L    A  V +L+D+              N  ++ L+ 
Sbjct: 61  LASEEELAELTGVEPGAVSPFGL----ANGVPVLIDESLLDYPDVVVGAGENGATLELSN 116

Query: 61  NDLDKF 66
            DL K 
Sbjct: 117 ADLRKL 122

This domain of unknown function is found in numerous prokaryote organisms. The structure of YbaK shows a novel fold. This domain also occurs in a number of prolyl-tRNA synthetases (proRS) from prokaryotes. Thus, the domain is thought to be involved in oligo-nucleotide binding, with possible roles in recognition/discrimination or editing of prolyl-tRNA. Length = 122

>gnl|CDD|239824 cd04332, YbaK_like, YbaK-like

 Score = 52.9 bits (128), Expect = 4e-09
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 1   MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNT 60
           +A EE + E+     G V PF L     + V +++D+     E  +         + L+ 
Sbjct: 68  LASEEELEELTGCEPGGVGPFGL----KKGVPVVVDESLLELEDVYVGAGERGADLHLSP 123

Query: 61  NDLDKFLK 68
            DL + L 
Sbjct: 124 ADLLRLLG 131

The YbaK family of deacylase domains includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, ProX, and PrdX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express an INS homolog in trans (e.g. YbaK, ProX, or PrdX). Length = 136

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	239
COG3760	164	Uncharacterized conserved protein [Function unknow	99.88
cd04335	156	PrdX_deacylase This CD includes bacterial (Agrobac	99.62
PRK10670	159	hypothetical protein; Provisional	99.33
TIGR00011	152	YbaK_EbsC ybaK/ebsC protein. This model represents	99.29
cd04336	153	YeaK YeaK is an uncharacterized Echerichia coli pr	99.24
cd00002	152	YbaK_deacylase This CD includes cysteinyl-tRNA(Pro	99.23
PF04073	123	tRNA_edit: Aminoacyl-tRNA editing domain; InterPro	99.23
cd04332	136	YbaK_like YbaK-like. The YbaK family of deacylase	99.12
cd04333	148	ProX_deacylase This CD, composed mainly of bacteri	99.11
cd04939	139	PA2301 PA2301 is an uncharacterized Pseudomonas ae	98.8
COG2606	155	EbsC Uncharacterized conserved protein [Function u	98.53
cd04334	160	ProRS-INS INS is an amino acid-editing domain inse	98.17
PRK09194	565	prolyl-tRNA synthetase; Provisional	96.49

>COG3760 Uncharacterized conserved protein [Function unknown]

Probab=99.88  E-value=4.8e-23  Score=174.26  Aligned_cols=81  Identities=36%  Similarity=0.621  Sum_probs=79.5

Q ss_pred             CCChHHHHHHhCCCCCccccccccCCCCCCeEEEEcCCcccCCeeeeecCCCcceeeecHHHHHHHHHhcCCCcEEEEcc
Q 026367            1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE   80 (239)
Q Consensus         1 FASeEeLeE~LGV~PGsVSPFaLlND~e~kVkLVIDesL~~~e~I~fHP~sNtaTl~IS~eDL~KFLes~Ghep~iVDfs   80 (239)
                      |+++|.|+|+|||.|||||+||++||.+++|++|+|+.|+..+.|+|||++|++|.+|+.+||.+||+++||+|.++|++
T Consensus        84 Fg~~E~l~E~LGv~pG~VT~Fglindt~~rv~ivlD~~l~~~~~infHPl~N~aTt~ia~~dl~~fL~atGhep~il~~~  163 (164)
T COG3760          84 FGSPERLMEYLGVIPGSVTVFGLINDTENRVKIVLDQALMDDDLINFHPLSNTATTSIASADLIRFLEATGHEPRILDVS  163 (164)
T ss_pred             cCCHHHHHHHhCCCcCceeEeeeecCccceEEEEEhHhhhhccccccccCCCccceeehHHHHHHHHHHcCCCceeeecc
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             C
Q 026367           81 A   81 (239)
Q Consensus        81 a   81 (239)
                      +
T Consensus       164 ~  164 (164)
T COG3760         164 A  164 (164)
T ss_pred             C
Confidence            5

>cd04335 PrdX_deacylase This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences

Probab=99.62  E-value=8e-16  Score=126.11  Aligned_cols=77  Identities=47%  Similarity=0.750  Sum_probs=74.5

Q ss_pred             CCChHHHHHHhCCCCCccccccccCCCCCCeEEEEcCCcccCCeeeeecCCCcceeeecHHHHHHHHHhcCCCcEEE
Q 026367            1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYV   77 (239)
Q Consensus         1 FASeEeLeE~LGV~PGsVSPFaLlND~e~kVkLVIDesL~~~e~I~fHP~sNtaTl~IS~eDL~KFLes~Ghep~iV   77 (239)
                      ||++|++++.+|+.+|+|+|||+.+|.++.+++|+|+++...+.++|||++++.++.|+++||.+|++.+||++.+|
T Consensus        80 ~a~~ee~~~~~g~~~G~v~P~gl~~~~~~~v~i~iD~~l~~~~~v~~~~G~~~~~~~i~~~dl~~~~~~~~~~~~~~  156 (156)
T cd04335          80 FASEERLEEKLGVTPGSVTPFALINDKENDVQVVLDKDLLEEERVGFHPLTNTATVGISTEDLLKFLEATGHEPTVV  156 (156)
T ss_pred             cCCHHHHHHHHCCCCceeCcceeccCCCCceEEEEChHHhcCCeEEEeCCCCceEEEEcHHHHHHHHHHcCCCceEC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999998875

The C. sticklandii PrdX protein, a homolog of the YbaK and ProX proteins, and the prolyl-tRNA synthetase-editing domain (ProRS-INS), specifically hydrolyzes Ala-tRNA(Pro). In this CD, many of the eukaryotic editing domains are N-terminal and cis-acting, expressed from a multidomain ProRS, however, similar to the bacterial PrdX, the mammalian, amphibian, and echinoderm PrdX-like proteins are trans-acting, single-domain proteins.

>PRK10670 hypothetical protein; Provisional

Probab=99.33  E-value=2.9e-12  Score=107.24  Aligned_cols=72  Identities=17%  Similarity=0.279  Sum_probs=67.4

Q ss_pred             CCChHHHHHHhCCCCCccccccccCCCCCCeEEEEcCCcccCCeeeeecCCCcceeeecHHHHHHHHHhcCCCcEEEEcc
Q 026367            1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE   80 (239)
Q Consensus         1 FASeEeLeE~LGV~PGsVSPFaLlND~e~kVkLVIDesL~~~e~I~fHP~sNtaTl~IS~eDL~KFLes~Ghep~iVDfs   80 (239)
                      ||++|++++++|+.+|+|+|||+.+    .+++|+|++|.+.+.++++++.++.++.|+++||.++++     .+|+||+
T Consensus        86 ~a~~eev~~~tG~~~G~v~P~Gl~~----~v~v~vD~~l~~~~~i~~~aG~~~~~~~i~~~dl~~l~~-----~~~~di~  156 (159)
T PRK10670         86 MADPMVAQRSTGYLVGGISPLGQKK----RLPTVIDAPAQEFATIYVSGGKRGLDIELAAGDLAKLLD-----AKFADIA  156 (159)
T ss_pred             cCCHHHHHHhhCCccceECccCCCC----CCeEEEehHHhcCCEEEEcCCCCCcEEEECHHHHHHHhC-----CEEEEEE
Confidence            7999999999999999999999855    499999999999999999999999999999999999988     5899997


Q ss_pred             C
Q 026367           81 A   81 (239)
Q Consensus        81 a   81 (239)
                      +
T Consensus       157 ~  157 (159)
T PRK10670        157 R  157 (159)
T ss_pred             e
Confidence            4

>TIGR00011 YbaK_EbsC ybaK/ebsC protein

Probab=99.29  E-value=6.6e-12  Score=102.61  Aligned_cols=71  Identities=18%  Similarity=0.311  Sum_probs=65.6

Q ss_pred             CCChHHHHHHhCCCCCccccccccCCCCCCeEEEEcCCcccCCeeeeecCCCcceeeecHHHHHHHHHhcCCCcEEEEcc
Q 026367            1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE   80 (239)
Q Consensus         1 FASeEeLeE~LGV~PGsVSPFaLlND~e~kVkLVIDesL~~~e~I~fHP~sNtaTl~IS~eDL~KFLes~Ghep~iVDfs   80 (239)
                      ||++|++.+++|+.+|+|+||++..    ++++|+|+++.+.+.+++||+.++.++.|+++||.+|++     ++++|++
T Consensus        82 ~a~~ee~~~~~g~~~G~v~P~g~~~----~~~vivD~~l~~~~~~~~~~g~~~~~~~i~~~dl~~~~~-----~~~~~i~  152 (152)
T TIGR00011        82 MADPKDAEKVTGYIRGGISPIGQKK----KFPTYIDESAKQLETIYVSGGKRGLQIELAPDDLIRLLD-----GTFADIA  152 (152)
T ss_pred             cCCHHHHHHhcCCcccccCCCCcCC----CccEEEehHHhcCCEEEEecCCCCcEEEECHHHHHHHhC-----CEEEecC
Confidence            6899999999999999999999754    489999999999999999999999999999999999998     5788764

This model represents the YbaK family, bacterial proteins whose full length sequence is homologous to an insertion domain in proline--tRNA ligases. The domain deacylates mischarged tRNAs. The YbaK protein of Haemophilus influenzae (HI1434), although still considered undefined in its role in vivo, likewise deacylates Ala-tRNA(Pro), but not the correctly charged Pro-tRNA(Pro). A crystallographic study of HI1434 suggests a nucleotide binding function. Previously, a member of this family was described as EbsC and was thought to be involved in cell wall metabolism.

>cd04336 YeaK YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function

Probab=99.24  E-value=1.7e-11  Score=99.75  Aligned_cols=71  Identities=23%  Similarity=0.372  Sum_probs=64.8

Q ss_pred             CCChHHHHHHhCCCCCccccccccCCCCCCeEEEEcCCccc-CCeeeeecCCCcceeeecHHHHHHHHHhcCCCcEEEEc
Q 026367            1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKA-QERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDL   79 (239)
Q Consensus         1 FASeEeLeE~LGV~PGsVSPFaLlND~e~kVkLVIDesL~~-~e~I~fHP~sNtaTl~IS~eDL~KFLes~Ghep~iVDf   79 (239)
                      ||+++++++++|+.+|+|+||++.+    .+++|+|+++.+ .+.|++||++|+.++.|+.+||.+|+.     +.+++|
T Consensus        82 ~a~~~~l~~~~g~~~G~v~P~gl~~----~v~~~iD~~l~~~~~~v~~~~G~~~~~l~i~~~dl~~~~~-----~~~~~~  152 (153)
T cd04336          82 LASPEEAEELTGCVIGAVPPFSFDP----KLKLIADPSLLDRGDEIAFNAGRLDASVVLDTADYLRIAR-----PLVLQF  152 (153)
T ss_pred             cCCHHHHHHHhCCccccCCCCCCCC----CceEEEChHHhccCCEEEEcCCCCCcEEEECHHHHHHHhC-----CEEecc
Confidence            6899999999999999999999964    589999999999 799999999999999999999999998     456665


Q ss_pred             c
Q 026367           80 E   80 (239)
Q Consensus        80 s   80 (239)
                      +
T Consensus       153 ~  153 (153)
T cd04336         153 T  153 (153)
T ss_pred             C
Confidence            3

The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.

>cd00002 YbaK_deacylase This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins

Probab=99.23  E-value=1.7e-11  Score=100.40  Aligned_cols=70  Identities=17%  Similarity=0.330  Sum_probs=64.0

Q ss_pred             CCChHHHHHHhCCCCCccccccccCCCCCCeEEEEcCCcccCCeeeeecCCCcceeeecHHHHHHHHHhcCCCcEEEEc
Q 026367            1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDL   79 (239)
Q Consensus         1 FASeEeLeE~LGV~PGsVSPFaLlND~e~kVkLVIDesL~~~e~I~fHP~sNtaTl~IS~eDL~KFLes~Ghep~iVDf   79 (239)
                      ||++|++.+++|+.+|+|+||++.+    .|++|+|+++.+.+.+++|++.++.++.|+.+||.+|++     .+|+|+
T Consensus        83 ~a~~ee~~~~~g~~~G~v~P~~l~~----~v~~liD~~l~~~~~~~~~ag~~~~~l~i~~~~l~~~~~-----~~~~~~  152 (152)
T cd00002          83 MAPPKDAERLTGYIRGGISPLGQKK----RLPTVIDESALDLDTIYVSAGKRGLQIELAPQDLAKLTG-----AKFADI  152 (152)
T ss_pred             cCCHHHHHHhcCCcccccCccCcCC----CccEEEehHHhcCCEEEEeCCCCCcEEEECHHHHHHHhC-----CEEecC
Confidence            6899999999999999999999963    599999999999999999999999999999999999988     356653

These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.

>PF04073 tRNA_edit: Aminoacyl-tRNA editing domain; InterPro: IPR007214 This domain of unknown function is found in numerous prokaryote organisms

Probab=99.23  E-value=1.8e-11  Score=96.30  Aligned_cols=63  Identities=22%  Similarity=0.444  Sum_probs=56.6

Q ss_pred             CCChHHHHHHhCCCCCccccccccCCCCCCeEEEEcCCcccCCeeeeecCCCcceeeecHHHHHHH
Q 026367            1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKF   66 (239)
Q Consensus         1 FASeEeLeE~LGV~PGsVSPFaLlND~e~kVkLVIDesL~~~e~I~fHP~sNtaTl~IS~eDL~KF   66 (239)
                      ||++|++++++|+.+|+|+||++.   ...+++|+|+++.+.+.+++|++.++.++.|+.+||.+|
T Consensus        61 ~a~~e~~~~~~g~~~G~v~P~g~~---~~~~~vvvD~~l~~~~~v~~~~g~~~~~l~~~~~dl~~l  123 (123)
T PF04073_consen   61 LASPEELEELTGYEPGGVSPFGLP---PKGVPVVVDESLLELDNVYFGAGEPGSHLEISNEDLRKL  123 (123)
T ss_dssp             E-HHHHHHHHHSSTTTS--SSGGG---STTEEEEEEGGGGGSSEEEEECSSTTEEEEEEHHHHHHH
T ss_pred             hccHHHhhhccCCCcceecccccc---cCccEEEEEHHHcCCCcEEEeCCCCCeEEEEChHHhccC
Confidence            689999999999999999999995   345999999999999999999999999999999999987

The structure of YbaK shows a novel fold. This domain also occurs in a number of prolyl-tRNA synthetases (proRS) from prokaryotes. Thus, the domain is thought to be involved in oligonucleotide binding, with possible roles in recognition/discrimination or editing of prolyl-tRNA [].; PDB: 3MEM_A 2J3L_A 2J3M_A 1WDV_B 2Z0X_A 2Z0K_A 2CX5_C 1DBX_B 1DBU_A 1VJF_A ....

>cd04332 YbaK_like YbaK-like

Probab=99.12  E-value=9e-11  Score=92.11  Aligned_cols=64  Identities=25%  Similarity=0.408  Sum_probs=60.8

Q ss_pred             CCChHHHHHHhCCCCCccccccccCCCCCCeEEEEcCCcccCCeeeeecCCCcceeeecHHHHHHHHH
Q 026367            1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLK   68 (239)
Q Consensus         1 FASeEeLeE~LGV~PGsVSPFaLlND~e~kVkLVIDesL~~~e~I~fHP~sNtaTl~IS~eDL~KFLe   68 (239)
                      ||++|++.+++|+.+|+|+||++..    .|++|+|+++.+.+.+++|++.++.++.|+.+||.+++.
T Consensus        68 ~a~~~~~~~~~g~~~G~v~P~~~~~----~v~~~iD~~l~~~~~~~~~~g~~~~~~~i~~~~l~~~~~  131 (136)
T cd04332          68 LASEEELEELTGCEPGGVGPFGLKK----GVPVVVDESLLELEDVYVGAGERGADLHLSPADLLRLLG  131 (136)
T ss_pred             eCCHHHHHHHhCCCcCccCccccCC----CCcEEEehHHhhCCeEEEcCCCcCcEEEECHHHHHHHhc
Confidence            6899999999999999999999974    499999999999999999999999999999999999887

The YbaK family of deacylase domains includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, ProX, and PrdX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express an INS homolog in trans (e.g. YbaK, ProX, or PrdX).

>cd04333 ProX_deacylase This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS)

Probab=99.11  E-value=1.7e-10  Score=93.90  Aligned_cols=64  Identities=20%  Similarity=0.396  Sum_probs=60.8

Q ss_pred             CCChHHHHHHhCCCCCccccccccCCCCCCeEEEEcCCcccCCeeeeecCCCcceeeecHHHHHHHHH
Q 026367            1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLK   68 (239)
Q Consensus         1 FASeEeLeE~LGV~PGsVSPFaLlND~e~kVkLVIDesL~~~e~I~fHP~sNtaTl~IS~eDL~KFLe   68 (239)
                      ||++|++++++|+.+|+|+||++..    .|++|+|+++...+.+++|++.++.++.|+.+||.+++.
T Consensus        79 ~a~~~~~~~~~g~~~G~v~P~gl~~----~v~v~vD~~l~~~~~i~~~~g~~~~~~~i~~~dl~~~~~  142 (148)
T cd04333          79 MADAEEVRELTGFAIGGVCPFGHPE----PLPVYLDESLKRFDEVWAAAGTPNAAFRLTPDELERLTG  142 (148)
T ss_pred             eCCHHHHHHHHCCCCCcCCCCCCCC----CCeEEEehhHhhCCeEEEcCCCCCcEEEECHHHHHHHhC
Confidence            6899999999999999999999964    499999999999999999999999999999999999987

While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.

>cd04939 PA2301 PA2301 is an uncharacterized Pseudomonas aeruginosa protein with a YbaK-like domain of unknown function

Probab=98.80  E-value=9.5e-09  Score=85.38  Aligned_cols=64  Identities=20%  Similarity=0.285  Sum_probs=61.0

Q ss_pred             CCChHHHHHHhCCCCCccccccccCCCCCCeEEEEcCCcccCCeeeeecCCCcceeeecHHHHHHHHH
Q 026367            1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLK   68 (239)
Q Consensus         1 FASeEeLeE~LGV~PGsVSPFaLlND~e~kVkLVIDesL~~~e~I~fHP~sNtaTl~IS~eDL~KFLe   68 (239)
                      ||+++++++.+|..+|+|||||+..+    +++|||+++++++.|++.++.-..++.|+++||.++..
T Consensus        72 ma~~~ev~~~TGy~~GGvsP~G~~~~----~pv~iD~sl~~~~~v~~saG~~~~~~~l~p~~L~~~~~  135 (139)
T cd04939          72 FAPMETAVELTGMEYGGITPVGLPAG----WPILVDSAVAERPAVVIGSGVRRSKLLLPGAALAELPG  135 (139)
T ss_pred             cCCHHHHHHhhCCCCccCCcCCcCCC----CCEEEehHHhcCCEEEECCCCCCcEEEECHHHHHHHhC
Confidence            79999999999999999999999664    99999999999999999999999999999999999876

The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.

>COG2606 EbsC Uncharacterized conserved protein [Function unknown]

Probab=98.53  E-value=1.6e-07  Score=79.45  Aligned_cols=65  Identities=18%  Similarity=0.320  Sum_probs=62.0

Q ss_pred             CCChHHHHHHhCCCCCccccccccCCCCCCeEEEEcCCcccCCeeeeecCCCcceeeecHHHHHHHHHh
Q 026367            1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKS   69 (239)
Q Consensus         1 FASeEeLeE~LGV~PGsVSPFaLlND~e~kVkLVIDesL~~~e~I~fHP~sNtaTl~IS~eDL~KFLes   69 (239)
                      ||+++++++.+|+..|.|||||+..    .+.+|+|+++++++.|++..+.-...|.|+++||.+++..
T Consensus        83 ma~~~~v~~~TGy~vGGv~P~G~~~----~~p~~iD~s~~~~~~I~~~aG~rg~~v~lap~dl~~l~~~  147 (155)
T COG2606          83 MADPEEVQRLTGYVVGGVSPFGQKK----RLPTYIDESALRFDTIYVSAGKRGLLVELAPQDLAELLGA  147 (155)
T ss_pred             cCCHHHHHHHhCCcccCcCCCCcCC----CCCEEEehhhhcCCeEEecCCCcCceEEECHHHHHHhhcc
Confidence            7899999999999999999999977    5999999999999999999999999999999999999873

>cd04334 ProRS-INS INS is an amino acid-editing domain inserted (INS) into the bacterial class II prolyl-tRNA synthetase (ProRS) however, this CD is not exclusively bacterial

Probab=98.17  E-value=2.1e-06  Score=70.92  Aligned_cols=50  Identities=18%  Similarity=0.317  Sum_probs=43.2

Q ss_pred             CCChHHHHHHhCCCCCccccccccCCCCCCeEEEEcCCcccCCeeeeecCCCcce
Q 026367            1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMS   55 (239)
Q Consensus         1 FASeEeLeE~LGV~PGsVSPFaLlND~e~kVkLVIDesL~~~e~I~fHP~sNtaT   55 (239)
                      ||++|+|++++|+.+|+|+|||+.     +|++|+|++|.+.+.+.+-.+.....
T Consensus        93 ~a~~eel~~~~g~~~G~v~P~gl~-----~v~~~iD~~l~~~~~~~~ga~~~~~~  142 (160)
T cd04334          93 LASEEEIEAATGAPPGFIGPVGLK-----KIPIIADRSVADLKNFVCGANEDDYH  142 (160)
T ss_pred             eCCHHHHHHhhCCCCCEECCcCCC-----CCeEEEehHHhcCCCEEEcCCCCCcE
Confidence            799999999999999999999997     59999999999987776665555543

It is also found at the N-terminus of the eukaryotic/archaea-like ProRS's of yeasts and single-celled parasites. ProRS catalyzes the attachment of proline to tRNA(Pro); proline is first activated by ATP, and then transferred to the acceptor end of tRNA(Pro). ProRS can inadvertently process noncognate amino acids such as alanine and cysteine, and to avoid such errors, in post-transfer editing, the INS domain deacylates mischarged Ala-tRNA(Pro), thus ensuring the fidelity of translation. Misacylated Cys-tRNA(Pro) is not edited by ProRS. In addition to the INS editing domain, the prokaryote-like ProRS protein contains catalytic and anticodon-binding domains which form a dimeric interface.

>PRK09194 prolyl-tRNA synthetase; Provisional

Probab=96.49  E-value=0.0032  Score=62.25  Aligned_cols=49  Identities=22%  Similarity=0.331  Sum_probs=41.6

Q ss_pred             CCChHHHHHHhCCCCCccccccccCCCCCCeEEEEcCCcccCCeeeeecCCCc
Q 026367            1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSND   53 (239)
Q Consensus         1 FASeEeLeE~LGV~PGsVSPFaLlND~e~kVkLVIDesL~~~e~I~fHP~sNt   53 (239)
                      ||++|++.+.+|+.+|+|+|||+.+    +|++|+|.++...+.+.+..+...
T Consensus       314 ~a~~eel~~~~g~~~G~v~P~Gl~~----~v~viiD~sl~~~~~~~~gan~~g  362 (565)
T PRK09194        314 LATEEEIRAALGAVPGFLGPVGLPK----DVPIIADRSVADMSNFVVGANEDD  362 (565)
T ss_pred             cCCHHHHHHhhCCCCCccCcccCCC----CceEEEeccccccccccccCCCCC
Confidence            6899999999999999999999986    499999999998776666544443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	239
1vjf_A	180	Crystal Structure Of A Putative Dna-Binding Protein		1e-11
1vki_A	181	Crystal Structure Of A Putative Oligo-Nucleotide Bi		3e-09

>pdb|1VJF|A Chain A, Crystal Structure Of A Putative Dna-Binding Protein (Cc_0111) From Caulobacter Crescentus Cb15 At 1.62 A Resolution Length = 180

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 48/86 (55%)
Query: 1   MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNT 60
             P+E  LE L V  GSVT F L+N++ + V  +LDK     +   FHPL ND + +++ 
Sbjct: 95  FGPQEXXLETLGVTPGSVTAFGLINDTEKRVRFVLDKALADSDPVNFHPLKNDATTAVSQ 154
Query: 61  NDLDKFLKSIGRDPAYVDLEANPAVG 86
             L +FL ++G +P  VD  A   VG
Sbjct: 155 AGLRRFLAALGVEPXIVDFAAXEVVG 180

>pdb|1VKI|A Chain A, Crystal Structure Of A Putative Oligo-Nucleotide Binding Protein (Atu3699, Agr_l_2275) From Agrobacterium Tumefaciens Str. C58 At 1.60 A Resolution Length = 181

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 41/70 (58%)
Query: 5   ETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLD 64
           E MLE L V  GSVT F  +N++AR V  +LD      E    HPLSND + ++ + DL 
Sbjct: 105 EKMLEYLGVVPGSVTVFGAINDTARQVTFVLDSDLLENELVNGHPLSNDQTTTIASKDLI 164
Query: 65  KFLKSIGRDP 74
           +FL++ G  P
Sbjct: 165 RFLEATGHAP 174

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	239
1vjf_A	180	DNA-binding protein, putative; structural genomics	1e-23
1vki_A	181	Hypothetical protein ATU3699; structural genomics,	2e-20
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07

>1vjf_A DNA-binding protein, putative; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI; HET: MSE; 1.62A {Caulobacter crescentus CB15} SCOP: d.116.1.1 Length = 180

 Score = 92.8 bits (230), Expect = 1e-23
 Identities = 34/86 (39%), Positives = 49/86 (56%)

Query: 1   MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNT 60
             P+E MLE L V  GSVT F L+N++ + V  +LDK     +   FHPL ND + +++ 
Sbjct: 95  FGPQEMMLETLGVTPGSVTAFGLINDTEKRVRFVLDKALADSDPVNFHPLKNDATTAVSQ 154

Query: 61  NDLDKFLKSIGRDPAYVDLEANPAVG 86
             L +FL ++G +P  VD  A   VG
Sbjct: 155 AGLRRFLAALGVEPMIVDFAAMEVVG 180

>1vki_A Hypothetical protein ATU3699; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.60A {Agrobacterium tumefaciens str} SCOP: d.116.1.1 Length = 181

 Score = 84.3 bits (208), Expect = 2e-20
 Identities = 30/79 (37%), Positives = 43/79 (54%)

Query: 1   MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNT 60
               E MLE L V  GSVT F  +N++AR V  +LD      E    HPLSND + ++ +
Sbjct: 101 FGRPEKMLEYLGVVPGSVTVFGAINDTARQVTFVLDSDLLENELVNGHPLSNDQTTTIAS 160

Query: 61  NDLDKFLKSIGRDPAYVDL 79
            DL +FL++ G  P  + +
Sbjct: 161 KDLIRFLEATGHAPLVLKV 179

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 1e-07
 Identities = 32/230 (13%), Positives = 67/230 (29%), Gaps = 66/230 (28%)

Query: 23  LVNESARDVALLLDKGFKA------------------QERCF-----FHPLSNDM-SISL 58
           +  +      +     FK                   Q+  +     +   S+   +I L
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 59  NTNDLDKFLKSIGRDPAYVDLEANPAVGKDQPPDLAAFVPSGSTVLPDLPDPASAVQSAG 118
             + +   L+ + +   Y                L         VL +       VQ+A 
Sbjct: 226 RIHSIQAELRRLLKSKPY-------------ENCL--------LVLLN-------VQNA- 256

Query: 119 GSHVNA-NNNCKA-ATEKAIKPAKDVQNVKDKSAKAVNPSSSFTDAE--KFVEEILDRIS 174
               NA N +CK   T +  +    +           + S + T  E    + + LD   
Sbjct: 257 -KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 175 AKLLSETKEGN---IAQQGQELGNEIA--NRLRKCCYPELKNLATIFKNT 219
             L  E    N   ++   + + + +A  +  +   +     L TI +++
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWK---HVNCDKLTTIIESS 362

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	239
1vjf_A	180	DNA-binding protein, putative; structural genomics	99.71
1vki_A	181	Hypothetical protein ATU3699; structural genomics,	99.71
3op6_A	152	Uncharacterized protein; structural genomics, join	99.32
2z0x_A	158	Putative uncharacterized protein TTHA1699; protein	99.32
1dbu_A	158	HI1434, cysteinyl-tRNA(Pro) deacylase; structural	99.28
1wdv_A	152	Hypothetical protein APE2540; structural genomics,	99.22
2dxa_A	166	Protein YBAK; trans-editing domain, prolyl-tRNA sy	99.18
3mem_A	457	Putative signal transduction protein; structural g	98.88

>1vjf_A DNA-binding protein, putative; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI; HET: MSE; 1.62A {Caulobacter crescentus CB15} SCOP: d.116.1.1

Probab=99.71  E-value=1.4e-17  Score=139.32  Aligned_cols=83  Identities=39%  Similarity=0.684  Sum_probs=80.1

Q ss_pred             CCChHHHHHHhCCCCCccccccccCCCCCCeEEEEcCCcccCCeeeeecCCCcceeeecHHHHHHHHHhcCCCcEEEEcc
Q 026367            1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE   80 (239)
Q Consensus         1 FASeEeLeE~LGV~PGsVSPFaLlND~e~kVkLVIDesL~~~e~I~fHP~sNtaTl~IS~eDL~KFLes~Ghep~iVDfs   80 (239)
                      ||++|++++.+|+.+|+|+|||+.+|.+++|++|+|+++...+.+++|||.|+.++.|+++||.+|++.++|++.||||+
T Consensus        95 ~a~~eel~~~tG~~~G~v~P~Gl~~~~~~~v~vviD~sl~~~~~i~~~ag~~~~~i~l~~~dL~~~~~~~~~~~~~v~~~  174 (180)
T 1vjf_A           95 FGPQEMMLETLGVTPGSVTAFGLINDTEKRVRFVLDKALADSDPVNFHPLKNDATTAVSQAGLRRFLAALGVEPMIVDFA  174 (180)
T ss_dssp             ECCHHHHHHHHCCCTTCCCGGGGGGCTTCCEEEEEEHHHHTCSSEEECSSSTTEEEEECHHHHHHHHHHTTCCCEEEETT
T ss_pred             eCCHHHHHHHhCCCCceeCccccCCCCCCccEEEEchHHhcCCcEEEeCCCCCeEEEECHHHHHHHHHhcCCCeEEEECc
Confidence            79999999999999999999999999889999999999999999999999999999999999999999999999999998


Q ss_pred             CCC
Q 026367           81 ANP   83 (239)
Q Consensus        81 a~p   83 (239)
                      +..
T Consensus       175 ~~~  177 (180)
T 1vjf_A          175 AME  177 (180)
T ss_dssp             TTE
T ss_pred             ccc
Confidence            743

>1vki_A Hypothetical protein ATU3699; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.60A {Agrobacterium tumefaciens str} SCOP: d.116.1.1

Probab=99.71  E-value=2.3e-17  Score=138.06  Aligned_cols=81  Identities=37%  Similarity=0.568  Sum_probs=78.6

Q ss_pred             CCChHHHHHHhCCCCCccccccccCCCCCCeEEEEcCCcccCCeeeeecCCCcceeeecHHHHHHHHHhcCCCcEEEEcc
Q 026367            1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE   80 (239)
Q Consensus         1 FASeEeLeE~LGV~PGsVSPFaLlND~e~kVkLVIDesL~~~e~I~fHP~sNtaTl~IS~eDL~KFLes~Ghep~iVDfs   80 (239)
                      ||++|++++.+|+.+|+|+|||++||..+.|++|+|+++...+.+++||+.|+.++.|+++||.+|++++||++.||||+
T Consensus       101 ~a~~eel~~~tG~~~G~v~P~Gl~~d~~~~v~vviD~sl~~~~~i~~~ag~~~~~i~l~~~dL~~~~~~~~~~~~~v~~~  180 (181)
T 1vki_A          101 FGRPEKMLEYLGVVPGSVTVFGAINDTARQVTFVLDSDLLENELVNGHPLSNDQTTTIASKDLIRFLEATGHAPLVLKVS  180 (181)
T ss_dssp             ECCHHHHHHHHCCCTTCCCGGGGGGCTTCCEEEEEETTGGGSSEEEECSSSTTEEEEEEHHHHHHHHHHTTCCCEEECCB
T ss_pred             ECCHHHHHHHHCCCcceECcceeccCCCCCCEEEEchHHhcCCeEEEeCCCCCeEEEECHHHHHHHHHhcCCCeEEEeCC
Confidence            78999999999999999999999999888999999999999999999999999999999999999999999999999997


Q ss_pred             C
Q 026367           81 A   81 (239)
Q Consensus        81 a   81 (239)
                      +
T Consensus       181 ~  181 (181)
T 1vki_A          181 E  181 (181)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3op6_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 2.00A {Legionella pneumophila subsp}

Probab=99.32  E-value=7.3e-13  Score=107.26  Aligned_cols=70  Identities=24%  Similarity=0.456  Sum_probs=64.9

Q ss_pred             CCChHHHHHHh-CCCCCccccccccCCCCCCeEEEEcCCcccCCeeeeecCCCcceeeecHHHHHHHHHhcCCCcEEEEc
Q 026367            1 MAPEETMLEIL-KVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDL   79 (239)
Q Consensus         1 FASeEeLeE~L-GV~PGsVSPFaLlND~e~kVkLVIDesL~~~e~I~fHP~sNtaTl~IS~eDL~KFLes~Ghep~iVDf   79 (239)
                      ||++|++++.| |+.+|+|+|||+.++    +++|+|+++.+.+.+++|||.++.++.|+++||.+++.     ..++|+
T Consensus        82 ~a~~e~l~~~~tG~~~G~v~P~g~~~~----~~v~~D~~l~~~~~i~~~ag~~~~~i~l~~~dl~~~~~-----~~~~d~  152 (152)
T 3op6_A           82 LATESEFEGKFAECDVGAMPPFGNLYG----LPVLVSTKLSAQDNILFNAGSHSELMQLSFGDFEKLVK-----PTLVTL  152 (152)
T ss_dssp             ECCGGGTGGGCTTSCTTCCCSCGGGGT----CCEEEEHHHHTSSEEEEECSSSSEEEEEEHHHHHHHHC-----CEEECC
T ss_pred             eCCHHHHHHHhcCCCcCCCCCCCCCcC----CeEEEehhhccCCeEEEeCCCCCcEEEECHHHHHHHhc-----CeecCC
Confidence            68999999986 999999999999876    99999999999999999999999999999999999998     466664

>2z0x_A Putative uncharacterized protein TTHA1699; protein-cyssa complex, translation, structural genomics, NPPSFA; HET: 5CA; 1.64A {Thermus thermophilus} PDB: 2z0k_A* 2cx5_A* 3rij_A 3ri0_A

Probab=99.32  E-value=2.5e-12  Score=103.87  Aligned_cols=72  Identities=15%  Similarity=0.182  Sum_probs=67.0

Q ss_pred             CCChHHHHHHhCCCCCccccccccCCCCCCeEEEEcCCcccCCeeeeecCCCcceeeecHHHHHHHHHhcCCCcEEEEcc
Q 026367            1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE   80 (239)
Q Consensus         1 FASeEeLeE~LGV~PGsVSPFaLlND~e~kVkLVIDesL~~~e~I~fHP~sNtaTl~IS~eDL~KFLes~Ghep~iVDfs   80 (239)
                      ||++|++++.+|+.+|+|+|||+.+    .+++|+|+++...+.|++|||.++.++.|+.+||.+++.     ..++|++
T Consensus        86 ~a~~e~~~~~tG~~~G~v~P~gl~~----~v~v~iD~~l~~~~~i~~~ag~~~~~i~l~~~dl~~~~~-----~~~~di~  156 (158)
T 2z0x_A           86 QATPEEVRELTGFAIGGVPPVGHNT----PLPAYLDEDLLGYPEVWAAGGTPRALFRATPKELLALTG-----AQVADLK  156 (158)
T ss_dssp             ECCHHHHHHHHSSCTTSCCSSCCSS----CCCEEEEGGGGGSSCEEEECSSTTEEEEECHHHHHHHHC-----CEEECCB
T ss_pred             ECCHHHHHHHhCCCCccCCcCCCCC----CCcEEEEhHHhcCCcEEEECCCCCEEEEECHHHHHHHhC-----CEEEEee
Confidence            6899999999999999999999964    599999999999999999999999999999999999988     4788887


Q ss_pred             C
Q 026367           81 A   81 (239)
Q Consensus        81 a   81 (239)
                      +
T Consensus       157 ~  157 (158)
T 2z0x_A          157 E  157 (158)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1dbu_A HI1434, cysteinyl-tRNA(Pro) deacylase; structural genomics, YBAK, structure 2 function project, S2F, hydrolase; HET: MSE; 1.80A {Haemophilus influenzae} SCOP: d.116.1.1 PDB: 1dbx_A

Probab=99.28  E-value=5.7e-12  Score=101.61  Aligned_cols=72  Identities=17%  Similarity=0.287  Sum_probs=66.6

Q ss_pred             CCChHHHHHHhCCCCCccccccccCCCCCCeEEEEcCCcccCCeeeeecCCCcceeeecHHHHHHHHHhcCCCcEEEEcc
Q 026367            1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE   80 (239)
Q Consensus         1 FASeEeLeE~LGV~PGsVSPFaLlND~e~kVkLVIDesL~~~e~I~fHP~sNtaTl~IS~eDL~KFLes~Ghep~iVDfs   80 (239)
                      ||++|++++.+|+.+|+|+|||+..    .|++|+|+++...+.+++|||.++.++.|+.+||.+++.     ..|+|+.
T Consensus        86 ~a~~e~~~~~tG~~~G~v~P~g~~~----~v~v~iD~~l~~~~~i~~~ag~~~~~~~v~~~dl~~~~~-----~~~~di~  156 (158)
T 1dbu_A           86 MADKDAAQKSTGYLVGGISPLGQKK----RVKTVINSTALEFETIYVSGGKRGLSVEIAPQDLAKVLG-----AEFTDIV  156 (158)
T ss_dssp             ECCHHHHHHHHSSCTTSCCSSSCSS----CCCEEEEGGGGGSSCEEEECSSTTEEEEECHHHHHHHHT-----CEEECCB
T ss_pred             eCCHHHHHHHhCCCCccCCCCCCCC----CCEEEEEhHHhcCCeEEEeCCCCCcEEEECHHHHHHHhC-----CEEEeee
Confidence            7899999999999999999999743    599999999999999999999999999999999999987     4688887


Q ss_pred             C
Q 026367           81 A   81 (239)
Q Consensus        81 a   81 (239)
                      +
T Consensus       157 ~  157 (158)
T 1dbu_A          157 D  157 (158)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1wdv_A Hypothetical protein APE2540; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.70A {Aeropyrum pernix} SCOP: d.116.1.1

Probab=99.22  E-value=2.2e-11  Score=97.16  Aligned_cols=71  Identities=17%  Similarity=0.331  Sum_probs=65.7

Q ss_pred             CCChHHHHHHhCCCCCccccccccCCCCCCeEEEEcCCcccCCeeeeecCCCcceeeecHHHHHHHHHhcCCCcEEEEcc
Q 026367            1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE   80 (239)
Q Consensus         1 FASeEeLeE~LGV~PGsVSPFaLlND~e~kVkLVIDesL~~~e~I~fHP~sNtaTl~IS~eDL~KFLes~Ghep~iVDfs   80 (239)
                      ||++|++++.+|+.+|+|+|||+.+    .+++|+|+++...+.+++|++.+..++.|+.+||.+++.     ..++|+.
T Consensus        81 ~a~~~e~~~~tG~~~G~v~P~g~~~----~v~v~~D~~l~~~~~v~~~~g~~~~~~~v~~~dl~~~~~-----~~~~di~  151 (152)
T 1wdv_A           81 LARANEVVELTGYPVGGVPPVALPP----NIVLVVDRILLSRKKVYGGGGRENALLEFSPRELVEATG-----AVVADVS  151 (152)
T ss_dssp             ECCHHHHHHHHSSCGGGCCSSSCCT----TCEEEEEGGGTTCSCEEEECSSTTEEEEECHHHHHHHHT-----CEEECCB
T ss_pred             eCCHHHHHHHhCCCCCCCCcCCCCC----CCcEEEehHHhcCCeEEEcCCCCCeEEEECHHHHHHHhC-----CEEEeee
Confidence            7999999999999999999999975    499999999999988999999999999999999999986     4688875

>2dxa_A Protein YBAK; trans-editing domain, prolyl-tRNA synthetase, structural genomics, NPPSFA; HET: MSE; 1.58A {Escherichia coli}

Probab=99.18  E-value=2.3e-11  Score=99.39  Aligned_cols=72  Identities=17%  Similarity=0.279  Sum_probs=66.2

Q ss_pred             CCChHHHHHHhCCCCCccccccccCCCCCCeEEEEcCCcccCCeeeeecCCCcceeeecHHHHHHHHHhcCCCcEEEEcc
Q 026367            1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE   80 (239)
Q Consensus         1 FASeEeLeE~LGV~PGsVSPFaLlND~e~kVkLVIDesL~~~e~I~fHP~sNtaTl~IS~eDL~KFLes~Ghep~iVDfs   80 (239)
                      ||++|++++.+|+.+|+|+|||+..    .|++|+|+++...+.+++|||.++.++.|+.+||.+++.     ..++|+.
T Consensus        93 ~a~~e~~~~~tG~~~G~v~P~g~~~----~v~v~iD~~l~~~~~i~~~ag~~~~~i~~~~~dl~~~~~-----~~~~di~  163 (166)
T 2dxa_A           93 MADPMVAQRSTGYLVGGISPLGQKK----RLPTIIDAPAQEFATIYVSGGKRGLDIELAAGDLAKILD-----AKFADIA  163 (166)
T ss_dssp             ECCHHHHHHHHSSCTTCCCSSSCSS----CCCEEEEGGGGGSSCEEEEEEETTEEEEECHHHHHHHHT-----CEEECCE
T ss_pred             ECCHHHHHHccCCCCccCCCcCCCC----CCeEEEEhHHhcCCeEEEcCCCCCcEEEECHHHHHHHhC-----CEEEEEe
Confidence            7899999999999999999999843    599999999999999999999999999999999999987     3688876


Q ss_pred             C
Q 026367           81 A   81 (239)
Q Consensus        81 a   81 (239)
                      .
T Consensus       164 ~  164 (166)
T 2dxa_A          164 R  164 (166)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei}

Probab=98.88  E-value=4.1e-10  Score=105.69  Aligned_cols=69  Identities=12%  Similarity=0.212  Sum_probs=64.7

Q ss_pred             CCChHHHHHHh-CCCCCccccccccCCCCCCeEEEEcCCcccCCeeeeecCCCcceeeecHHHHHHHHHhcCCC
Q 026367            1 MAPEETMLEIL-KVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRD   73 (239)
Q Consensus         1 FASeEeLeE~L-GV~PGsVSPFaLlND~e~kVkLVIDesL~~~e~I~fHP~sNtaTl~IS~eDL~KFLes~Ghe   73 (239)
                      ||+++++++.+ |+.+|+|||||+.++    +++|||+++.+++.|++|++++..++.|+++||.+++...+|.
T Consensus        70 ~~~~~~~~~~~~g~~~Ggv~P~g~~~~----~~~~iD~~l~~~~~i~~~~G~~~~~i~l~~~dl~~~~~~~~~~  139 (457)
T 3mem_A           70 MMQRREQVRVRQKAGLQELPALPSLTG----WPTVVDRRVDELEAVALELGEQDLGLMMPAEDFRQLTAKAARH  139 (457)
T ss_dssp             ECCHHHHHHHHHHHTCSSCCSCGGGTC----CCEEEEHHHHHCSEEEEECSSSSEEEEEEHHHHHHHTTTSEEE
T ss_pred             eCCHHHHHHHcCCCCCCCCCCCCCCcC----CCEEEehhhccCCEEEEECCCCCceEEECHHHHHHHHccCCcc
Confidence            68999999999 699999999999886    9999999999999999999999999999999999999976543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	239
d1vjfa_	168	d.116.1.1 (A:) Hypothetical protein CC0111 {Caulob	3e-22
d1vkia_	165	d.116.1.1 (A:) Hypothetical protein Atu3699 {Agrob	5e-17

>d1vjfa_ d.116.1.1 (A:) Hypothetical protein CC0111 {Caulobacter crescentus [TaxId: 155892]} Length = 168

class: Alpha and beta proteins (a+b)
fold: YbaK/ProRS associated domain
superfamily: YbaK/ProRS associated domain
family: YbaK/ProRS associated domain
domain: Hypothetical protein CC0111
species: Caulobacter crescentus [TaxId: 155892]

 Score = 87.5 bits (216), Expect = 3e-22
 Identities = 34/86 (39%), Positives = 49/86 (56%)

Query: 1   MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNT 60
             P+E MLE L V  GSVT F L+N++ + V  +LDK     +   FHPL ND + +++ 
Sbjct: 83  FGPQEMMLETLGVTPGSVTAFGLINDTEKRVRFVLDKALADSDPVNFHPLKNDATTAVSQ 142

Query: 61  NDLDKFLKSIGRDPAYVDLEANPAVG 86
             L +FL ++G +P  VD  A   VG
Sbjct: 143 AGLRRFLAALGVEPMIVDFAAMEVVG 168

>d1vkia_ d.116.1.1 (A:) Hypothetical protein Atu3699 {Agrobacterium tumefaciens, strain C58 [TaxId: 358]} Length = 165

class: Alpha and beta proteins (a+b)
fold: YbaK/ProRS associated domain
superfamily: YbaK/ProRS associated domain
family: YbaK/ProRS associated domain
domain: Hypothetical protein Atu3699
species: Agrobacterium tumefaciens, strain C58 [TaxId: 358]

 Score = 73.5 bits (180), Expect = 5e-17
 Identities = 30/79 (37%), Positives = 43/79 (54%)

Query: 1   MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNT 60
               E MLE L V  GSVT F  +N++AR V  +LD      E    HPLSND + ++ +
Sbjct: 85  FGRPEKMLEYLGVVPGSVTVFGAINDTARQVTFVLDSDLLENELVNGHPLSNDQTTTIAS 144

Query: 61  NDLDKFLKSIGRDPAYVDL 79
            DL +FL++ G  P  + +
Sbjct: 145 KDLIRFLEATGHAPLVLKV 163

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	239
d1vjfa_	168	Hypothetical protein CC0111 {Caulobacter crescentu	99.88
d1vkia_	165	Hypothetical protein Atu3699 {Agrobacterium tumefa	99.86
d1dbxa_	157	Hypothetical protein HI1434 (YbaK homologue) {Haem	99.34
d1wdva_	150	Hypothetical protein APE2540 {Aeropyrum pernix [Ta	99.27

>d1vjfa_ d.116.1.1 (A:) Hypothetical protein CC0111 {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a+b)
fold: YbaK/ProRS associated domain
superfamily: YbaK/ProRS associated domain
family: YbaK/ProRS associated domain
domain: Hypothetical protein CC0111
species: Caulobacter crescentus [TaxId: 155892]

Probab=99.88  E-value=1.7e-23  Score=171.20  Aligned_cols=86  Identities=40%  Similarity=0.699  Sum_probs=83.7

Q ss_pred             CCChHHHHHHhCCCCCccccccccCCCCCCeEEEEcCCcccCCeeeeecCCCcceeeecHHHHHHHHHhcCCCcEEEEcc
Q 026367            1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE   80 (239)
Q Consensus         1 FASeEeLeE~LGV~PGsVSPFaLlND~e~kVkLVIDesL~~~e~I~fHP~sNtaTl~IS~eDL~KFLes~Ghep~iVDfs   80 (239)
                      ||++|++++++|+.+|+|||||++||.++.|++|||++|++.+.|+|||++|+.||.|+++||.||++++||+|.||||+
T Consensus        83 ~a~~e~~~~~~G~~~G~v~Pfg~~~d~~~~v~v~iD~~l~~~~~i~~~~g~~~~ti~l~~~dl~k~l~~~~~~p~~~d~~  162 (168)
T d1vjfa_          83 FGPQEMMLETLGVTPGSVTAFGLINDTEKRVRFVLDKALADSDPVNFHPLKNDATTAVSQAGLRRFLAALGVEPMIVDFA  162 (168)
T ss_dssp             ECCHHHHHHHHCCCTTCCCGGGGGGCTTCCEEEEEEHHHHTCSSEEECSSSTTEEEEECHHHHHHHHHHTTCCCEEEETT
T ss_pred             ccCHHHHHHccCCCCCcccccccccCCccCcceeechhHhcCCEEEEeCCCCCeEEEECHHHHHHHHHHcCCCcEEEEcc
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC
Q 026367           81 ANPAVG   86 (239)
Q Consensus        81 a~p~vg   86 (239)
                      +.+.+|
T Consensus       163 ~~~~~~  168 (168)
T d1vjfa_         163 AMEVVG  168 (168)
T ss_dssp             TTEEC-
T ss_pred             cCCCCC
Confidence            999887

>d1vkia_ d.116.1.1 (A:) Hypothetical protein Atu3699 {Agrobacterium tumefaciens, strain C58 [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: YbaK/ProRS associated domain
superfamily: YbaK/ProRS associated domain
family: YbaK/ProRS associated domain
domain: Hypothetical protein Atu3699
species: Agrobacterium tumefaciens, strain C58 [TaxId: 358]

Probab=99.86  E-value=3.1e-22  Score=163.52  Aligned_cols=81  Identities=37%  Similarity=0.568  Sum_probs=79.3

Q ss_pred             CCChHHHHHHhCCCCCccccccccCCCCCCeEEEEcCCcccCCeeeeecCCCcceeeecHHHHHHHHHhcCCCcEEEEcc
Q 026367            1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE   80 (239)
Q Consensus         1 FASeEeLeE~LGV~PGsVSPFaLlND~e~kVkLVIDesL~~~e~I~fHP~sNtaTl~IS~eDL~KFLes~Ghep~iVDfs   80 (239)
                      ||++|++++++|+.||+|||||++||.++.|++|||++|.+.+.|+|||++|+.||.|+++||.+||+++||+|.||||+
T Consensus        85 ~a~~e~~~~~~g~~~G~V~Pfg~~~d~~~~v~viiD~~l~~~~~i~~~~g~~~~ti~i~~~dl~k~l~~~~h~~~~~~~~  164 (165)
T d1vkia_          85 FGRPEKMLEYLGVVPGSVTVFGAINDTARQVTFVLDSDLLENELVNGHPLSNDQTTTIASKDLIRFLEATGHAPLVLKVS  164 (165)
T ss_dssp             ECCHHHHHHHHCCCTTCCCGGGGGGCTTCCEEEEEETTGGGSSEEEECSSSTTEEEEEEHHHHHHHHHHTTCCCEEECCB
T ss_pred             ccCHHHHHHhhCCCcccccchhhccCcccccceehhhHHhcCCEEEEeCCCCCeEEEECHHHHHHHHHHcCCCeEEEeCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             C
Q 026367           81 A   81 (239)
Q Consensus        81 a   81 (239)
                      +
T Consensus       165 e  165 (165)
T d1vkia_         165 E  165 (165)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1dbxa_ d.116.1.1 (A:) Hypothetical protein HI1434 (YbaK homologue) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: YbaK/ProRS associated domain
superfamily: YbaK/ProRS associated domain
family: YbaK/ProRS associated domain
domain: Hypothetical protein HI1434 (YbaK homologue)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.34  E-value=7.7e-13  Score=106.26  Aligned_cols=73  Identities=16%  Similarity=0.291  Sum_probs=68.2

Q ss_pred             CCChHHHHHHhCCCCCccccccccCCCCCCeEEEEcCCcccCCeeeeecCCCcceeeecHHHHHHHHHhcCCCcEEEEcc
Q 026367            1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE   80 (239)
Q Consensus         1 FASeEeLeE~LGV~PGsVSPFaLlND~e~kVkLVIDesL~~~e~I~fHP~sNtaTl~IS~eDL~KFLes~Ghep~iVDfs   80 (239)
                      ||++|++++++|+.+|+|+|||+.++    |++|+|+++.+.+.|++++|+++.++.|+++||.+|+.     .+++|++
T Consensus        85 ~a~~e~~~~~tG~~~G~v~P~g~~~~----i~v~iD~~l~~~~~v~~~aG~~~~~i~i~~~dl~~l~~-----~~v~di~  155 (157)
T d1dbxa_          85 MADKDAAQKSTGYLVGGISPLGQKKR----VKTVINSTALEFETIYVSGGKRGLSVEIAPQDLAKVLG-----AEFTDIV  155 (157)
T ss_dssp             ECCHHHHHHHHSCCTTCCCSSSCSSC----CCEEEEGGGGGSSCEEEECSSTTEEEEECHHHHHHHHT-----CEEECCB
T ss_pred             cCCHHHHHHccCCccceeeccccccc----chHHHhHHHhhCCEEEEeCCCCCeEEEECHHHHHHHhC-----CEEEeee
Confidence            68999999999999999999999764    99999999999999999999999999999999999997     4888887


Q ss_pred             CC
Q 026367           81 AN   82 (239)
Q Consensus        81 a~   82 (239)
                      ++
T Consensus       156 e~  157 (157)
T d1dbxa_         156 DE  157 (157)
T ss_dssp             CC
T ss_pred             cC
Confidence            63

>d1wdva_ d.116.1.1 (A:) Hypothetical protein APE2540 {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: YbaK/ProRS associated domain
superfamily: YbaK/ProRS associated domain
family: YbaK/ProRS associated domain
domain: Hypothetical protein APE2540
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.27  E-value=3.5e-12  Score=101.99  Aligned_cols=72  Identities=17%  Similarity=0.321  Sum_probs=66.8

Q ss_pred             CCChHHHHHHhCCCCCccccccccCCCCCCeEEEEcCCcccCCeeeeecCCCcceeeecHHHHHHHHHhcCCCcEEEEcc
Q 026367            1 MAPEETMLEILKVPLGSVTPFALVNESARDVALLLDKGFKAQERCFFHPLSNDMSISLNTNDLDKFLKSIGRDPAYVDLE   80 (239)
Q Consensus         1 FASeEeLeE~LGV~PGsVSPFaLlND~e~kVkLVIDesL~~~e~I~fHP~sNtaTl~IS~eDL~KFLes~Ghep~iVDfs   80 (239)
                      ||++|++++.+|+.+|+|+|||+.++    +++|+|+++...+.+++++|.+..++.|+++||.++..     .+++|+.
T Consensus        79 ~a~~~e~~~~tG~~~G~v~P~g~~~~----~~v~iD~~l~~~~~v~~~aG~~~~~~~i~~~dL~~~~~-----~~~~di~  149 (150)
T d1wdva_          79 LARANEVVELTGYPVGGVPPVALPPN----IVLVVDRILLSRKKVYGGGGRENALLEFSPRELVEATG-----AVVADVS  149 (150)
T ss_dssp             ECCHHHHHHHHSSCGGGCCSSSCCTT----CEEEEEGGGTTCSCEEEECSSTTEEEEECHHHHHHHHT-----CEEECCB
T ss_pred             cCCHHHHHHhcCCCcceeecccCCCC----CeEEEEhHHhcCCeEEEeCCCCCeEEEECHHHHHHHHC-----CEEEecc
Confidence            79999999999999999999999764    99999999999999999999999999999999999987     5788876


Q ss_pred             C
Q 026367           81 A   81 (239)
Q Consensus        81 a   81 (239)
                      +
T Consensus       150 ~  150 (150)
T d1wdva_         150 E  150 (150)
T ss_dssp             C
T ss_pred             C
Confidence            3