Citrus Sinensis ID: 026376

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQSR
Secondary Structure (PSIPRED)
ccccccccccccEEEEcccccccccccEEEEEEEEEEcccccccEEccEEcccccccEEEEccccccHHHHHHHHccccccccEEEEEccccEEEEccccccccccccccHHHHHHHHcccccHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHccccEEEEEcccHHHHHHHccEEEEEEcccEEEEcccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEcccccccccccEEEEEcEEEEcccccEEEEEEEEEEccccEEEEEccccccHHHHHHHHHccccccccEEEEcccEEEEEEcccHHHHcccccHHHHHHHHHcccccHHHHHHHHHHccccHHHHcccHHHccHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHEEEccccEEEEcccHHHHHHHHHcc
Coil and Loop (DISEMBL)
mghvdevvndpdykfefptpddrpgppiisfsdasfgypggpilfknlnfgidldsriamvgpngigkSTILKLIAgelqpssgtvfRSAKVRIAVFSQhhvdgldlssnpllymmrcfpgvpeqkLRAHlgsfgvtgnlalqpmytlsggqkSRVAFAKItfkkphiilldepsnhldlDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELwvvsegkatpfhgtFHDYKKMLQSR
Flexible Loop (DISEMBL)
mghvdevvndpdykfefptpddrpgPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGkatpfhgtfhdykkmlqsr
Low Complexity Region (SEG)
MGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQSR
Disordered region (IsUnstruct)
***************************IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY*******
Disordered Region (DISOPRED)
*GHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQS*
Disordered Region (DISEMBL)
MGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQSR
Disordered Region (DISPRO)
***VDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQ**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	239	2.2.26 [Sep-21-2011]
Q8H0V6	715	ABC transporter F family	yes	no	0.995	0.332	0.907	1e-130
P43535	752	Protein GCN20 OS=Saccharo	yes	no	0.953	0.303	0.486	4e-63
Q8T6B4	1142	ABC transporter F family	no	no	0.907	0.190	0.497	3e-60
Q9FJH6	595	ABC transporter F family	no	no	0.991	0.398	0.449	2e-59
O59672	736	Uncharacterized ABC trans	yes	no	0.895	0.290	0.5	1e-58
Q8K268	709	ATP-binding cassette sub-	yes	no	0.828	0.279	0.433	5e-54
Q9USH9	822	Uncharacterized ABC trans	no	no	0.769	0.223	0.460	7e-54
Q66H39	709	ATP-binding cassette sub-	yes	no	0.828	0.279	0.433	8e-54
Q9NUQ8	709	ATP-binding cassette sub-	yes	no	0.828	0.279	0.429	4e-53
Q5R9Z5	709	ATP-binding cassette sub-	yes	no	0.828	0.279	0.429	5e-53

>sp|Q8H0V6|AB3F_ARATH ABC transporter F family member 3 OS=Arabidopsis thaliana GN=ABCF3 PE=2 SV=1

 Score =  465 bits (1196), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 216/238 (90%), Positives = 233/238 (97%)

Query: 1   MGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAM 60
           + HVD+V+NDPDYKFEFPTPDD+PGPPIISFSDASFGYPGGP+LF+NLNFGIDLDSRIAM
Sbjct: 476 LAHVDQVINDPDYKFEFPTPDDKPGPPIISFSDASFGYPGGPLLFRNLNFGIDLDSRIAM 535

Query: 61  VGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP 120
           VGPNGIGKSTILKLI+G+LQPSSGTVFRSAKVR+AVFSQHHVDGLDLSSNPLLYMMRC+P
Sbjct: 536 VGPNGIGKSTILKLISGDLQPSSGTVFRSAKVRVAVFSQHHVDGLDLSSNPLLYMMRCYP 595

Query: 121 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 180
           GVPEQKLR+HLGS GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH++LLDEPSNHLDL
Sbjct: 596 GVPEQKLRSHLGSLGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHLLLLDEPSNHLDL 655

Query: 181 DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQS 238
           DAVEALIQGLVLFQGGI MVSHDEHLISGSV+ELWVVS+G+  PFHGTFHDYKK+LQS
Sbjct: 656 DAVEALIQGLVLFQGGICMVSHDEHLISGSVDELWVVSDGRIAPFHGTFHDYKKLLQS 713

Arabidopsis thaliana (taxid: 3702)

>sp|P43535|GCN20_YEAST Protein GCN20 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GCN20 PE=1 SV=1

 Score =  241 bits (614), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 112/230 (48%), Positives = 156/230 (67%), Gaps = 2/230 (0%)

Query: 10  DPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKS 69
           D    F+FP  D +  PPII   D SFGY    +L K++N  + +DSRIA+VG NG GK+
Sbjct: 514 DKTIDFKFPECD-KLSPPIIQLQDVSFGYDENNLLLKDVNLDVQMDSRIALVGANGCGKT 572

Query: 70  TILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA 129
           T+LK++  +L+P  G V R+ ++RI  F+QHHVD +DL+++ + +M + FPG  +++ R 
Sbjct: 573 TLLKIMMEQLRPLKGFVSRNPRLRIGYFTQHHVDSMDLTTSAVDWMSKSFPGKTDEEYRR 632

Query: 130 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQG 189
           HLGSFG+TG L LQ M  LSGGQKSRVAFA +    PHI++LDEPSNHLD   ++AL++ 
Sbjct: 633 HLGSFGITGTLGLQKMQLLSGGQKSRVAFAALCLNNPHILVLDEPSNHLDTTGLDALVEA 692

Query: 190 LVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK-MLQS 238
           L  F GG+LMVSHD  +I    +E+WV  +G    F GT +DY+  +LQS
Sbjct: 693 LKNFNGGVLMVSHDISVIDSVCKEIWVSEQGTVKRFEGTIYDYRDYILQS 742

Positive effector of the eIF-2-alpha kinase activity of GCN2.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q8T6B4|ABCF4_DICDI ABC transporter F family member 4 OS=Dictyostelium discoideum GN=abcF4 PE=3 SV=1

 Score =  231 bits (590), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 109/219 (49%), Positives = 156/219 (71%), Gaps = 2/219 (0%)

Query: 16   EFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI 75
            +FP P+    PP++ F D  FGY G P +FK L+ GID+DS+IA+VG NG+GKST++KL+
Sbjct: 911  DFPQPE-HLTPPLLVFKDVCFGYEGRPTMFKKLDIGIDMDSKIALVGMNGVGKSTLMKLM 969

Query: 76   AGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFG 135
             G+L  ++G + RS K+R+A FSQH VD LD +  P+ Y    F   P Q++R HLG FG
Sbjct: 970  NGDLHETTGYIERSRKMRVARFSQHFVDQLDTTMTPIEYFQSKFNNPPVQQIRNHLGRFG 1029

Query: 136  VTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQG 195
            +  +L L  + TLSGGQKSRV  A++ + +PHI+LLDEP+NHLD+DA+EAL +G+  F G
Sbjct: 1030 ICNSLPLHKITTLSGGQKSRVILAELAWAEPHILLLDEPTNHLDIDAIEALAEGINAFTG 1089

Query: 196  GILMVSHDEHLISGSVEELWVV-SEGKATPFHGTFHDYK 233
            G++++SH++HLI+   E++WVV  +G    + GTF DYK
Sbjct: 1090 GVVLISHNQHLINLIAEQIWVVKKDGTIYLYPGTFMDYK 1128

Dictyostelium discoideum (taxid: 44689)

>sp|Q9FJH6|AB1F_ARATH ABC transporter F family member 1 OS=Arabidopsis thaliana GN=ABCF1 PE=1 SV=1

 Score =  229 bits (583), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 107/238 (44%), Positives = 160/238 (67%), Gaps = 1/238 (0%)

Query: 2   GHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMV 61
           G  ++V  D    F F      P PP++ F + SFGY    +++KN++FG+DLDSR+A+V
Sbjct: 354 GLTEKVARDSVLVFRFADVGKLP-PPVLQFVEVSFGYTPDYLIYKNIDFGVDLDSRVALV 412

Query: 62  GPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPG 121
           GPNG GKST+LKL+ GEL P+ G V R   ++IA + QH  + LDL    LLYMMR FPG
Sbjct: 413 GPNGAGKSTLLKLMTGELHPTEGMVRRHNHLKIAQYHQHLAEKLDLELPALLYMMREFPG 472

Query: 122 VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD 181
             E+K+RA +G FG+TG   + PM  LS GQ+SRV FA + +K+P+++LLDEP+NHLD++
Sbjct: 473 TEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVIFAWLAYKQPNMLLLDEPTNHLDIE 532

Query: 182 AVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQSR 239
            +++L + L  + GG+++VSHD  LI+    E+WV  +   T ++G   D+K+ L+++
Sbjct: 533 TIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCEKQCITKWNGDIMDFKRHLKAK 590

Arabidopsis thaliana (taxid: 3702)

>sp|O59672|YB89_SCHPO Uncharacterized ABC transporter ATP-binding protein C29A3.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC29A3.09c PE=3 SV=1

 Score =  226 bits (576), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 108/216 (50%), Positives = 151/216 (69%), Gaps = 2/216 (0%)

Query: 25  GPPIISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS 83
            PPI+  SD +F Y PG PIL K+++  + +DSRI +VGPNG GKST+LKL+  +L P+S
Sbjct: 514 SPPILQMSDVNFEYVPGHPIL-KHVDIDVQMDSRIGVVGPNGAGKSTMLKLLIEQLHPTS 572

Query: 84  GTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ 143
           G V R  ++RIA F+QHHVD LDL+ N L ++ + FPG  E++ R HLG+FGV+G LALQ
Sbjct: 573 GIVSRHPRLRIAYFAQHHVDTLDLNLNALSFLAKTFPGKGEEEYRRHLGAFGVSGPLALQ 632

Query: 144 PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHD 203
            M TLSGGQKSRVAFA +  + PHI++LDEP+NHLD+++++AL + +  FQGG+++VSHD
Sbjct: 633 KMITLSGGQKSRVAFACLGLQNPHILILDEPTNHLDMESMDALTRAVKRFQGGVILVSHD 692

Query: 204 EHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQSR 239
              +  +   +W       + F GT   YKK   S+
Sbjct: 693 VDFLDKTCTSIWQCDHNVVSKFDGTISQYKKFCLSQ 728

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q8K268|ABCF3_MOUSE ATP-binding cassette sub-family F member 3 OS=Mus musculus GN=Abcf3 PE=1 SV=1

 Score =  210 bits (535), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 101/233 (43%), Positives = 148/233 (63%)

Query: 7   VVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGI 66
           V  + +   +FP   ++  PPI+   +  F Y     +F  L+   DL+SRI +VG NG 
Sbjct: 470 VDKESEVVLKFPDGFEKFSPPILQLDEVDFYYDPKHSIFSRLSVSADLESRICVVGENGA 529

Query: 67  GKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQK 126
           GKST+LKL+ G+L P  G       ++I  FSQHHV+ LDL+ + +  + R FPG+PE++
Sbjct: 530 GKSTMLKLLMGDLSPVRGIRHAHRNLKIGYFSQHHVEQLDLNVSAVELLARKFPGLPEEE 589

Query: 127 LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 186
            R  LG +G++G LA++P+ +LSGGQKSRVAFA++T   P+  +LDEP+NHLD++ +EAL
Sbjct: 590 YRHQLGRYGISGELAMRPVASLSGGQKSRVAFAQMTMPCPNFYILDEPTNHLDMETIEAL 649

Query: 187 IQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQSR 239
            Q L  F+GG+++VSHDE  I    +ELWV   G  T   G F  Y+ +LQ +
Sbjct: 650 GQALNNFRGGVILVSHDERFIRLVCKELWVCENGSVTRVEGGFDQYRALLQEQ 702

Mus musculus (taxid: 10090)

>sp|Q9USH9|YJQ1_SCHPO Uncharacterized ABC transporter ATP-binding protein C825.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC825.01 PE=1 SV=1

 Score =  210 bits (534), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 140/213 (65%)

Query: 27  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86
           P I F D SF YPGGP +F  LNFG+DL SR+A+VGPNG GK+T++KLI  ++QPS+G+V
Sbjct: 592 PAIKFQDVSFNYPGGPTIFSKLNFGLDLKSRVALVGPNGAGKTTLIKLILEKVQPSTGSV 651

Query: 87  FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMY 146
            R   +R+A+F+QH  D LD+  + + ++   F   PE ++R  +G +G+TG   + PM 
Sbjct: 652 VRHHGLRLALFNQHMGDQLDMRLSAVEWLRTKFGNKPEGEMRRIVGRYGLTGKSQVIPMG 711

Query: 147 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHL 206
            LS GQ+ RV FA +   +PHI+LLDEP+N LD+D ++AL   L  F GG++ ++HD  L
Sbjct: 712 QLSDGQRRRVLFAFLGMTQPHILLLDEPTNALDIDTIDALADALNNFDGGVVFITHDFRL 771

Query: 207 ISGSVEELWVVSEGKATPFHGTFHDYKKMLQSR 239
           I    EE+W+V  G    F G   DYK ML+ +
Sbjct: 772 IDQVAEEIWIVQNGTVKEFDGEIRDYKMMLKQQ 804

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q66H39|ABCF3_RAT ATP-binding cassette sub-family F member 3 OS=Rattus norvegicus GN=Abcf3 PE=2 SV=1

 Score =  210 bits (534), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 101/233 (43%), Positives = 148/233 (63%)

Query: 7   VVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGI 66
           V  + +   +FP   ++  PPI+   +  F Y    I+F  L+   DL+SRI +VG NG 
Sbjct: 470 VDKESEVVLKFPDGFEKFSPPILQLDEVDFYYDPKHIIFSRLSVSADLESRICVVGENGA 529

Query: 67  GKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQK 126
           GKST+LKL+ G+L P  G       ++I  FSQHHV+ LDL+ + +  + R FPG PE++
Sbjct: 530 GKSTMLKLLMGDLAPVRGIRHAHRNLKIGYFSQHHVEQLDLNVSAVELLARKFPGRPEEE 589

Query: 127 LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 186
            R  LG +G++G LA++P+ +LSGGQKSRVAFA++T   P+  +LDEP+NHLD++ +EAL
Sbjct: 590 YRHQLGRYGISGELAMRPVASLSGGQKSRVAFAQMTMPCPNFYILDEPTNHLDMETIEAL 649

Query: 187 IQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQSR 239
              L  F+GG+++VSHDE  I    +ELWV  +G  T   G F  Y+ +LQ +
Sbjct: 650 GHALNNFRGGVVLVSHDERFIRLVCKELWVCEKGSVTRVEGGFDQYRALLQEQ 702

Rattus norvegicus (taxid: 10116)

>sp|Q9NUQ8|ABCF3_HUMAN ATP-binding cassette sub-family F member 3 OS=Homo sapiens GN=ABCF3 PE=1 SV=2

 Score =  207 bits (528), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 100/233 (42%), Positives = 147/233 (63%)

Query: 7   VVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGI 66
           V  + +   +FP   ++  PPI+   +  F Y    ++F  L+   DL+SRI +VG NG 
Sbjct: 470 VDKESEVVMKFPDGFEKFSPPILQLDEVDFYYDPKHVIFSRLSVSADLESRICVVGENGA 529

Query: 67  GKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQK 126
           GKST+LKL+ G+L P  G       ++I  FSQHHV+ LDL+ + +  + R FPG PE++
Sbjct: 530 GKSTMLKLLLGDLAPVRGIRHAHRNLKIGYFSQHHVEQLDLNVSAVELLARKFPGRPEEE 589

Query: 127 LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 186
            R  LG +G++G LA++P+ +LSGGQKSRVAFA++T   P+  +LDEP+NHLD++ +EAL
Sbjct: 590 YRHQLGRYGISGELAMRPLASLSGGQKSRVAFAQMTMPCPNFYILDEPTNHLDMETIEAL 649

Query: 187 IQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQSR 239
            + L  F+GG+++VSHDE  I     ELWV   G  T   G F  Y+ +LQ +
Sbjct: 650 GRALNNFRGGVILVSHDERFIRLVCRELWVCEGGGVTRVEGGFDQYRALLQEQ 702

Homo sapiens (taxid: 9606)

>sp|Q5R9Z5|ABCF3_PONAB ATP-binding cassette sub-family F member 3 OS=Pongo abelii GN=ABCF3 PE=2 SV=1

 Score =  207 bits (527), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 100/233 (42%), Positives = 147/233 (63%)

Query: 7   VVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGI 66
           V  + +   +FP   ++  PPI+   +  F Y    ++F  L+   DL+SRI +VG NG 
Sbjct: 470 VDKESEVVMKFPDGFEKFSPPILQLDEVDFYYDPKHVIFSRLSVSADLESRICVVGENGA 529

Query: 67  GKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQK 126
           GKST+LKL+ G+L P  G       ++I  FSQHHV+ LDL+ + +  + R FPG PE++
Sbjct: 530 GKSTMLKLLLGDLAPVRGIRHAHRNLKIGYFSQHHVEQLDLNVSAVELLARKFPGRPEEE 589

Query: 127 LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 186
            R  LG +G++G LA++P+ +LSGGQKSRVAFA++T   P+  +LDEP+NHLD++ +EAL
Sbjct: 590 YRHQLGRYGISGELAMRPVASLSGGQKSRVAFAQMTMPCPNFYILDEPTNHLDMETIEAL 649

Query: 187 IQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQSR 239
            + L  F+GG+++VSHDE  I     ELWV   G  T   G F  Y+ +LQ +
Sbjct: 650 GRALNNFRGGVILVSHDERFIRLVCRELWVCEGGGVTRVEGGFDQYRALLQEQ 702

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
255555673	383	ATP-dependent transporter, putative [Ric	0.995	0.621	0.966	1e-133
225426226	716	PREDICTED: ABC transporter F family memb	0.995	0.332	0.962	1e-133
449501829	519	PREDICTED: ABC transporter F family memb	0.995	0.458	0.957	1e-133
449452232	710	PREDICTED: ABC transporter F family memb	0.995	0.335	0.957	1e-132
356575104	712	PREDICTED: ABC transporter F family memb	0.995	0.334	0.949	1e-132
224058091	716	ABC transporter family protein [Populus	0.995	0.332	0.945	1e-131
357462361	713	ABC transporter family protein [Medicago	0.995	0.333	0.928	1e-129
15217680	715	ABC transporter F family member 3 [Arabi	0.995	0.332	0.907	1e-129
297839987	715	ATGCN3 [Arabidopsis lyrata subsp. lyrata	0.995	0.332	0.907	1e-129
222623958	722	hypothetical protein OsJ_08959 [Oryza sa	0.995	0.329	0.899	1e-125

>gi|255555673|ref|XP_002518872.1| ATP-dependent transporter, putative [Ricinus communis] gi|223541859|gb|EEF43405.1| ATP-dependent transporter, putative [Ricinus communis]

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 230/238 (96%), Positives = 237/238 (99%)

Query: 1   MGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAM 60
           +GHVDE++NDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGP+LFKNLNFGIDLDSRIAM
Sbjct: 145 LGHVDEIINDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPMLFKNLNFGIDLDSRIAM 204

Query: 61  VGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP 120
           VGPNGIGKSTILKLIAGELQP+SGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP
Sbjct: 205 VGPNGIGKSTILKLIAGELQPTSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP 264

Query: 121 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 180
           GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL
Sbjct: 265 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 324

Query: 181 DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQS 238
           DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEG+ATPFHGTF DYKK+LQS
Sbjct: 325 DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGRATPFHGTFQDYKKILQS 382

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426226|ref|XP_002263179.1| PREDICTED: ABC transporter F family member 3 [Vitis vinifera] gi|297742399|emb|CBI34548.3| unnamed protein product [Vitis vinifera]

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 229/238 (96%), Positives = 236/238 (99%)

Query: 1   MGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAM 60
           +GHVDEV+NDPDYKFEFPTPDDRPG PIISFSDASFGYPGGP+LFKNLNFGIDLDSRIAM
Sbjct: 478 LGHVDEVINDPDYKFEFPTPDDRPGLPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAM 537

Query: 61  VGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP 120
           VGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRC+P
Sbjct: 538 VGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCYP 597

Query: 121 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 180
           GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL
Sbjct: 598 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 657

Query: 181 DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQS 238
           DAVEALIQGLVLFQGG+LMVSHDEHLISGSVEELWVVSEGK +PFHGTFHDYKK+LQS
Sbjct: 658 DAVEALIQGLVLFQGGVLMVSHDEHLISGSVEELWVVSEGKVSPFHGTFHDYKKILQS 715

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449501829|ref|XP_004161469.1| PREDICTED: ABC transporter F family member 3-like [Cucumis sativus]

 Score =  478 bits (1231), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 228/238 (95%), Positives = 233/238 (97%)

Query: 1   MGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAM 60
           +GHVDEV+NDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAM
Sbjct: 281 IGHVDEVINDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAM 340

Query: 61  VGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP 120
           VGPNGIGKSTILKLIAGELQP+SGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP
Sbjct: 341 VGPNGIGKSTILKLIAGELQPTSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP 400

Query: 121 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 180
           GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF+KITFKKPHIILLDEPSNHLDL
Sbjct: 401 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFSKITFKKPHIILLDEPSNHLDL 460

Query: 181 DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQS 238
           DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELW VSEGK  PF GTF DYKK+LQS
Sbjct: 461 DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWAVSEGKVNPFRGTFQDYKKILQS 518

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452232|ref|XP_004143864.1| PREDICTED: ABC transporter F family member 3-like [Cucumis sativus]

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 228/238 (95%), Positives = 233/238 (97%)

Query: 1   MGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAM 60
           +GHVDEV+NDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAM
Sbjct: 472 IGHVDEVINDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAM 531

Query: 61  VGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP 120
           VGPNGIGKSTILKLIAGELQP+SGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP
Sbjct: 532 VGPNGIGKSTILKLIAGELQPTSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP 591

Query: 121 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 180
           GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF+KITFKKPHIILLDEPSNHLDL
Sbjct: 592 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFSKITFKKPHIILLDEPSNHLDL 651

Query: 181 DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQS 238
           DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELW VSEGK  PF GTF DYKK+LQS
Sbjct: 652 DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWAVSEGKVNPFRGTFQDYKKILQS 709

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575104|ref|XP_003555682.1| PREDICTED: ABC transporter F family member 3-like [Glycine max]

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 226/238 (94%), Positives = 234/238 (98%)

Query: 1   MGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAM 60
           MGHVDE+VNDPDYKF+FPTP+DRPG PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAM
Sbjct: 474 MGHVDEIVNDPDYKFDFPTPEDRPGAPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAM 533

Query: 61  VGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP 120
           VGPNGIGKSTILKLIAG+LQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRC+P
Sbjct: 534 VGPNGIGKSTILKLIAGDLQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCYP 593

Query: 121 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 180
           GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL
Sbjct: 594 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 653

Query: 181 DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQS 238
           DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVS+G+  PFHGTF DYKK+LQS
Sbjct: 654 DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSDGRVAPFHGTFQDYKKILQS 711

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058091|ref|XP_002299447.1| ABC transporter family protein [Populus trichocarpa] gi|222846705|gb|EEE84252.1| ABC transporter family protein [Populus trichocarpa]

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 225/238 (94%), Positives = 235/238 (98%)

Query: 1   MGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAM 60
           +GH+DE+VNDPDYKFEFPTPDDRPG PIISFSDASFGYPGGP++FKNLNFGIDLDSRIAM
Sbjct: 478 LGHMDEIVNDPDYKFEFPTPDDRPGAPIISFSDASFGYPGGPLMFKNLNFGIDLDSRIAM 537

Query: 61  VGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP 120
           VGPNGIGKSTILKLIAGELQP+SGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP
Sbjct: 538 VGPNGIGKSTILKLIAGELQPTSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP 597

Query: 121 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 180
           GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL
Sbjct: 598 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 657

Query: 181 DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQS 238
           DAVEALIQGLVLFQGGILMVSHDEHLISGSV+ELWVVS+G+ TPFHGTF DYKK+LQS
Sbjct: 658 DAVEALIQGLVLFQGGILMVSHDEHLISGSVDELWVVSQGRVTPFHGTFLDYKKILQS 715

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462361|ref|XP_003601462.1| ABC transporter family protein [Medicago truncatula] gi|355490510|gb|AES71713.1| ABC transporter family protein [Medicago truncatula]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 221/238 (92%), Positives = 231/238 (97%)

Query: 1   MGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAM 60
           +GHVD ++NDPDYKFEFPTPDDRPG PIISFSDASFGYPGGPILF+NLNFGIDLDSRIAM
Sbjct: 475 LGHVDAIINDPDYKFEFPTPDDRPGAPIISFSDASFGYPGGPILFRNLNFGIDLDSRIAM 534

Query: 61  VGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP 120
           VGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRC+P
Sbjct: 535 VGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCYP 594

Query: 121 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 180
           GVPEQKLR HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL
Sbjct: 595 GVPEQKLRGHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 654

Query: 181 DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQS 238
           DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELW+VSEG+  PFHGTF +YK++L S
Sbjct: 655 DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWIVSEGRVAPFHGTFAEYKRILHS 712

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15217680|ref|NP_176636.1| ABC transporter F family member 3 [Arabidopsis thaliana] gi|75329083|sp|Q8H0V6.1|AB3F_ARATH RecName: Full=ABC transporter F family member 3; Short=ABC transporter ABCF.3; Short=AtABCF3; AltName: Full=GCN20-type ATP-binding cassette protein GCN3 gi|25082978|gb|AAN72026.1| ABC transporter protein, putative [Arabidopsis thaliana] gi|34365711|gb|AAQ65167.1| At1g64550 [Arabidopsis thaliana] gi|332196131|gb|AEE34252.1| ABC transporter F family member 3 [Arabidopsis thaliana]

 Score =  465 bits (1196), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 216/238 (90%), Positives = 233/238 (97%)

Query: 1   MGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAM 60
           + HVD+V+NDPDYKFEFPTPDD+PGPPIISFSDASFGYPGGP+LF+NLNFGIDLDSRIAM
Sbjct: 476 LAHVDQVINDPDYKFEFPTPDDKPGPPIISFSDASFGYPGGPLLFRNLNFGIDLDSRIAM 535

Query: 61  VGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP 120
           VGPNGIGKSTILKLI+G+LQPSSGTVFRSAKVR+AVFSQHHVDGLDLSSNPLLYMMRC+P
Sbjct: 536 VGPNGIGKSTILKLISGDLQPSSGTVFRSAKVRVAVFSQHHVDGLDLSSNPLLYMMRCYP 595

Query: 121 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 180
           GVPEQKLR+HLGS GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH++LLDEPSNHLDL
Sbjct: 596 GVPEQKLRSHLGSLGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHLLLLDEPSNHLDL 655

Query: 181 DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQS 238
           DAVEALIQGLVLFQGGI MVSHDEHLISGSV+ELWVVS+G+  PFHGTFHDYKK+LQS
Sbjct: 656 DAVEALIQGLVLFQGGICMVSHDEHLISGSVDELWVVSDGRIAPFHGTFHDYKKLLQS 713

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839987|ref|XP_002887875.1| ATGCN3 [Arabidopsis lyrata subsp. lyrata] gi|297333716|gb|EFH64134.1| ATGCN3 [Arabidopsis lyrata subsp. lyrata]

 Score =  465 bits (1196), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 216/238 (90%), Positives = 233/238 (97%)

Query: 1   MGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAM 60
           + HVD+V+NDPDYKFEFPTPDD+PGPPIISFSDASFGYPGGP+LF+NLNFGIDLDSRIAM
Sbjct: 476 LAHVDQVINDPDYKFEFPTPDDKPGPPIISFSDASFGYPGGPLLFRNLNFGIDLDSRIAM 535

Query: 61  VGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP 120
           VGPNGIGKSTILKLI+G+LQPSSGTVFRSAKVR+AVFSQHHVDGLDLSSNPLLYMMRC+P
Sbjct: 536 VGPNGIGKSTILKLISGDLQPSSGTVFRSAKVRVAVFSQHHVDGLDLSSNPLLYMMRCYP 595

Query: 121 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 180
           GVPEQKLR+HLGS GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH++LLDEPSNHLDL
Sbjct: 596 GVPEQKLRSHLGSLGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHLLLLDEPSNHLDL 655

Query: 181 DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQS 238
           DAVEALIQGLVLFQGGI MVSHDEHLISGSV+ELWVVS+G+  PFHGTFHDYKK+LQS
Sbjct: 656 DAVEALIQGLVLFQGGICMVSHDEHLISGSVDELWVVSDGRIAPFHGTFHDYKKLLQS 713

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222623958|gb|EEE58090.1| hypothetical protein OsJ_08959 [Oryza sativa Japonica Group]

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 214/238 (89%), Positives = 230/238 (96%)

Query: 1   MGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAM 60
           M HVD VV+DPDYKFEFPTPDDRPGPPIISFSDASFGYPGGP LFKNLNFGIDLDSRIAM
Sbjct: 485 MEHVDAVVSDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPTLFKNLNFGIDLDSRIAM 544

Query: 61  VGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP 120
           VGPNGIGKSTILKLI+G+LQP+SGTVFRS KVR+AVF+QHHVDGLDL+ NPLLYMMRC+P
Sbjct: 545 VGPNGIGKSTILKLISGDLQPTSGTVFRSPKVRMAVFNQHHVDGLDLTVNPLLYMMRCYP 604

Query: 121 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 180
           GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL
Sbjct: 605 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 664

Query: 181 DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQS 238
           DAVEALIQGL++FQGG+LMVSHDEHLI+GSV+ELWVVSEG+ +PF GTF DYKKML+S
Sbjct: 665 DAVEALIQGLLVFQGGVLMVSHDEHLITGSVDELWVVSEGRVSPFAGTFKDYKKMLKS 722

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
TAIR|locus:2019409	715	ABCF3 "ATP-binding cassette F3	0.995	0.332	0.907	2.9e-119
DICTYBASE|DDB_G0285997	708	abcF1 "ABC transporter-related	0.983	0.331	0.506	4.3e-61
POMBASE|SPBC29A3.09c	736	SPBC29A3.09c "AAA family ATPas	0.953	0.309	0.489	2.8e-57
SGD|S000001905	752	GCN20 "Positive regulator of t	0.953	0.303	0.486	3.6e-57
DICTYBASE|DDB_G0267436	1142	abcF4 "putative non-transporte	0.933	0.195	0.488	3.7e-56
ASPGD|ASPL0000074597	751	AN4315 [Emericella nidulans (t	0.962	0.306	0.450	4.2e-56
TAIR|locus:2159300	595	ABCF1 "ATP-binding cassette F1	0.991	0.398	0.449	9.9e-55
UNIPROTKB|G4NB88	750	MGG_11547 "Uncharacterized pro	0.962	0.306	0.454	2.1e-54
CGD|CAL0005158	751	GCN20 [Candida albicans (taxid	0.933	0.296	0.48	2.6e-54
UNIPROTKB|Q5ABB0	751	GCN20 "ATP-binding cassette pr	0.933	0.296	0.48	2.6e-54

TAIR|locus:2019409 ABCF3 "ATP-binding cassette F3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1174 (418.3 bits), Expect = 2.9e-119, P = 2.9e-119
 Identities = 216/238 (90%), Positives = 233/238 (97%)

Query:     1 MGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAM 60
             + HVD+V+NDPDYKFEFPTPDD+PGPPIISFSDASFGYPGGP+LF+NLNFGIDLDSRIAM
Sbjct:   476 LAHVDQVINDPDYKFEFPTPDDKPGPPIISFSDASFGYPGGPLLFRNLNFGIDLDSRIAM 535

Query:    61 VGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP 120
             VGPNGIGKSTILKLI+G+LQPSSGTVFRSAKVR+AVFSQHHVDGLDLSSNPLLYMMRC+P
Sbjct:   536 VGPNGIGKSTILKLISGDLQPSSGTVFRSAKVRVAVFSQHHVDGLDLSSNPLLYMMRCYP 595

Query:   121 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 180
             GVPEQKLR+HLGS GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH++LLDEPSNHLDL
Sbjct:   596 GVPEQKLRSHLGSLGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHLLLLDEPSNHLDL 655

Query:   181 DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQS 238
             DAVEALIQGLVLFQGGI MVSHDEHLISGSV+ELWVVS+G+  PFHGTFHDYKK+LQS
Sbjct:   656 DAVEALIQGLVLFQGGICMVSHDEHLISGSVDELWVVSDGRIAPFHGTFHDYKKLLQS 713

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005215 "transporter activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005829 "cytosol" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

DICTYBASE|DDB_G0285997 abcF1 "ABC transporter-related protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 122/241 (50%), Positives = 167/241 (69%)

Query:     1 MGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAM 60
             M  + EV++DP    +F  P+    PPI+ F D SFGY    +LFKNLN GID+ SR+A+
Sbjct:   466 MEDIGEVLDDPTVTLQFLEPEPL-APPILQFQDVSFGYTPDKLLFKNLNLGIDMGSRVAL 524

Query:    61 VGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP 120
             VG NG GK+T+L+L+ GEL+ ++G V R+ K+R + FSQH VD LDLS +PL   +  +P
Sbjct:   525 VGANGAGKTTLLRLLCGELEETNGLVIRNGKLRFSRFSQHFVDQLDLSKSPLDNFLAKYP 584

Query:   121 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 180
             G   Q  R+HLG FG++G++AL+ + TLSGGQKSRV  A+I++ KPHI+LLDEPSNHLD+
Sbjct:   585 GTTAQTARSHLGKFGLSGDIALRTVNTLSGGQKSRVVLAQISYTKPHILLLDEPSNHLDI 644

Query:   181 DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATP-----FHGTFHDYKKM 235
             D V+AL   L +F+GGIL+VSHDE LIS   +E+W     +  P     F G ++DYKK 
Sbjct:   645 DTVDALCHALNVFEGGILLVSHDERLISLVCDEIWYFDGEEGEPKEVKNFDGDWNDYKKA 704

Query:   236 L 236
             +
Sbjct:   705 I 705

GO:0005615 "extracellular space" evidence=IDA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0006448 "regulation of translational elongation" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

POMBASE|SPBC29A3.09c SPBC29A3.09c "AAA family ATPase Gcn20 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
 Identities = 113/231 (48%), Positives = 161/231 (69%)

Query:    10 DPDYKFEFPTPDDRPGPPIISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGK 68
             + + +FEFP P ++  PPI+  SD +F Y PG PIL K+++  + +DSRI +VGPNG GK
Sbjct:   500 EEEVEFEFP-PVEKISPPILQMSDVNFEYVPGHPIL-KHVDIDVQMDSRIGVVGPNGAGK 557

Query:    69 STILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLR 128
             ST+LKL+  +L P+SG V R  ++RIA F+QHHVD LDL+ N L ++ + FPG  E++ R
Sbjct:   558 STMLKLLIEQLHPTSGIVSRHPRLRIAYFAQHHVDTLDLNLNALSFLAKTFPGKGEEEYR 617

Query:   129 AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 188
              HLG+FGV+G LALQ M TLSGGQKSRVAFA +  + PHI++LDEP+NHLD+++++AL +
Sbjct:   618 RHLGAFGVSGPLALQKMITLSGGQKSRVAFACLGLQNPHILILDEPTNHLDMESMDALTR 677

Query:   189 GLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQSR 239
              +  FQGG+++VSHD   +  +   +W       + F GT   YKK   S+
Sbjct:   678 AVKRFQGGVILVSHDVDFLDKTCTSIWQCDHNVVSKFDGTISQYKKFCLSQ 728

GO:0002182 "cytoplasmic translational elongation" evidence=NAS

GO:0005524 "ATP binding" evidence=ISM

GO:0005829 "cytosol" evidence=IDA

GO:0006448 "regulation of translational elongation" evidence=ISO

GO:0016887 "ATPase activity" evidence=ISM

GO:0022626 "cytosolic ribosome" evidence=ISO

SGD|S000001905 GCN20 "Positive regulator of the Gcn2p kinase activity" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
 Identities = 112/230 (48%), Positives = 156/230 (67%)

Query:    10 DPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKS 69
             D    F+FP  D +  PPII   D SFGY    +L K++N  + +DSRIA+VG NG GK+
Sbjct:   514 DKTIDFKFPECD-KLSPPIIQLQDVSFGYDENNLLLKDVNLDVQMDSRIALVGANGCGKT 572

Query:    70 TILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA 129
             T+LK++  +L+P  G V R+ ++RI  F+QHHVD +DL+++ + +M + FPG  +++ R 
Sbjct:   573 TLLKIMMEQLRPLKGFVSRNPRLRIGYFTQHHVDSMDLTTSAVDWMSKSFPGKTDEEYRR 632

Query:   130 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQG 189
             HLGSFG+TG L LQ M  LSGGQKSRVAFA +    PHI++LDEPSNHLD   ++AL++ 
Sbjct:   633 HLGSFGITGTLGLQKMQLLSGGQKSRVAFAALCLNNPHILVLDEPSNHLDTTGLDALVEA 692

Query:   190 LVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK-MLQS 238
             L  F GG+LMVSHD  +I    +E+WV  +G    F GT +DY+  +LQS
Sbjct:   693 LKNFNGGVLMVSHDISVIDSVCKEIWVSEQGTVKRFEGTIYDYRDYILQS 742

GO:0005524 "ATP binding" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005829 "cytosol" evidence=IPI

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0006448 "regulation of translational elongation" evidence=IMP;IPI

GO:0016887 "ATPase activity" evidence=IEA;ISS

DICTYBASE|DDB_G0267436 abcF4 "putative non-transporter ABC protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 588 (212.0 bits), Expect = 3.7e-56, P = 3.7e-56
 Identities = 110/225 (48%), Positives = 157/225 (69%)

Query:    10 DPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKS 69
             D     +FP P+    PP++ F D  FGY G P +FK L+ GID+DS+IA+VG NG+GKS
Sbjct:   905 DASLVVDFPQPEHLT-PPLLVFKDVCFGYEGRPTMFKKLDIGIDMDSKIALVGMNGVGKS 963

Query:    70 TILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA 129
             T++KL+ G+L  ++G + RS K+R+A FSQH VD LD +  P+ Y    F   P Q++R 
Sbjct:   964 TLMKLMNGDLHETTGYIERSRKMRVARFSQHFVDQLDTTMTPIEYFQSKFNNPPVQQIRN 1023

Query:   130 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQG 189
             HLG FG+  +L L  + TLSGGQKSRV  A++ + +PHI+LLDEP+NHLD+DA+EAL +G
Sbjct:  1024 HLGRFGICNSLPLHKITTLSGGQKSRVILAELAWAEPHILLLDEPTNHLDIDAIEALAEG 1083

Query:   190 LVLFQGGILMVSHDEHLISGSVEELWVVS-EGKATPFHGTFHDYK 233
             +  F GG++++SH++HLI+   E++WVV  +G    + GTF DYK
Sbjct:  1084 INAFTGGVVLISHNQHLINLIAEQIWVVKKDGTIYLYPGTFMDYK 1128

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0006448 "regulation of translational elongation" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ASPGD|ASPL0000074597 AN4315 [Emericella nidulans (taxid:162425)]

 Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
 Identities = 104/231 (45%), Positives = 158/231 (68%)

Query:    10 DPDYKFEFPTPD-DRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGK 68
             + DY   F  P+ ++  PPI+  ++ +FGY    +L KN++  + LDSRI +VGPNG GK
Sbjct:   511 ESDYVVHFKFPEVEKLSPPIVQMTEVAFGYTKDKLLLKNVDLDVQLDSRIGIVGPNGAGK 570

Query:    69 STILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLR 128
             +T+LKL+ G+L+P+SG + +  ++RI  F+QHHVD LDL+++ + +M + +PG  +++ R
Sbjct:   571 TTVLKLLTGQLEPTSGLMSQHPRLRIGYFAQHHVDALDLTTSAVSFMAKTYPGKTDEEYR 630

Query:   129 AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 188
              HLG+FG+TG   LQ M  LSGGQKSRVAFA ++   PHI++LDEPSNHLD++ ++AL +
Sbjct:   631 RHLGAFGITGMTGLQRMELLSGGQKSRVAFACLSLTNPHILVLDEPSNHLDIEGMDALSE 690

Query:   189 GLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQSR 239
              L  F+GG++MVSHD  ++      LWV  +G    F GT   YKK + ++
Sbjct:   691 ALQKFEGGVVMVSHDVTMLRNVCTSLWVCDKGTVQKFDGTVDAYKKKISAQ 741

GO:0006448 "regulation of translational elongation" evidence=IEA

GO:0022626 "cytosolic ribosome" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

TAIR|locus:2159300 ABCF1 "ATP-binding cassette F1" [Arabidopsis thaliana (taxid:3702)]

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 107/238 (44%), Positives = 160/238 (67%)

Query:     2 GHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMV 61
             G  ++V  D    F F      P PP++ F + SFGY    +++KN++FG+DLDSR+A+V
Sbjct:   354 GLTEKVARDSVLVFRFADVGKLP-PPVLQFVEVSFGYTPDYLIYKNIDFGVDLDSRVALV 412

Query:    62 GPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPG 121
             GPNG GKST+LKL+ GEL P+ G V R   ++IA + QH  + LDL    LLYMMR FPG
Sbjct:   413 GPNGAGKSTLLKLMTGELHPTEGMVRRHNHLKIAQYHQHLAEKLDLELPALLYMMREFPG 472

Query:   122 VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD 181
               E+K+RA +G FG+TG   + PM  LS GQ+SRV FA + +K+P+++LLDEP+NHLD++
Sbjct:   473 TEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVIFAWLAYKQPNMLLLDEPTNHLDIE 532

Query:   182 AVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQSR 239
              +++L + L  + GG+++VSHD  LI+    E+WV  +   T ++G   D+K+ L+++
Sbjct:   533 TIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCEKQCITKWNGDIMDFKRHLKAK 590

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005215 "transporter activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

UNIPROTKB|G4NB88 MGG_11547 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
 Identities = 105/231 (45%), Positives = 152/231 (65%)

Query:    10 DPDYKFEFPTPD-DRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGK 68
             + +Y   F  PD ++  PPI+  S+ +FGY    IL +N++  + LDSRI +VGPNG GK
Sbjct:   510 EAEYSVHFRFPDVEKLSPPIVQMSEVTFGYTPDNILLRNVDLDVQLDSRIGIVGPNGAGK 569

Query:    69 STILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLR 128
             +T+LKL+  +L P+SG + +  ++RI  F+QHHVD LDL+ + + +M + +PG  +++ R
Sbjct:   570 TTVLKLLISKLTPTSGIISQHPRLRIGFFAQHHVDALDLTVSAVSFMAKTYPGRTDEEYR 629

Query:   129 AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 188
               LG+FG+TG   LQ M  LSGGQKSRVAFA +    PHI++LDEPSNHLD++A++AL  
Sbjct:   630 RQLGAFGITGTTGLQKMEVLSGGQKSRVAFACLALTNPHILVLDEPSNHLDIEAMDALAD 689

Query:   189 GLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQSR 239
              L  FQGG+LMVSHD  ++      LWV   G    F+G    YKK + ++
Sbjct:   690 ALNQFQGGVLMVSHDVTMLQTVCTSLWVCDGGTVEKFNGDVQAYKKRIAAQ 740

GO:0008150 "biological_process" evidence=ND

CGD|CAL0005158 GCN20 [Candida albicans (taxid:5476)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 108/225 (48%), Positives = 149/225 (66%)

Query:    15 FEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKL 74
             F+F  PD    P I+   D SFGY    +LFK++N  + +DSRIA  G NG GK+T+LKL
Sbjct:   518 FKFAEPDSISAP-ILQLQDVSFGYDTNKMLFKDVNLDVQMDSRIAFCGGNGTGKTTLLKL 576

Query:    75 IAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF 134
             +  +L P+SG V ++ ++RI  F+QHHVD +DL+ + + +M + FPG  +++ R HLGSF
Sbjct:   577 VMDQLSPTSGYVNKNGRLRIGYFAQHHVDAMDLTLSAVSWMSQAFPGKTDEEYRRHLGSF 636

Query:   135 GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQ 194
             G+TG+L LQ M  LSGGQKSRVAFA +   +PHI++LDEPSNHLD   ++AL   L  F+
Sbjct:   637 GITGSLGLQKMQLLSGGQKSRVAFAALCLNQPHILVLDEPSNHLDTQGLDALADALKNFK 696

Query:   195 GGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK-MLQS 238
             GG+LMVSHD  +I     E+WV        F G  + YKK +L+S
Sbjct:   697 GGVLMVSHDVSIIDRVCNEIWVAENNTIFKFPGDIYAYKKHILES 741

GO:0005524 "ATP binding" evidence=ISS

GO:0022626 "cytosolic ribosome" evidence=IEA

GO:0006448 "regulation of translational elongation" evidence=IEA

UNIPROTKB|Q5ABB0 GCN20 "ATP-binding cassette protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 108/225 (48%), Positives = 149/225 (66%)

Query:    15 FEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKL 74
             F+F  PD    P I+   D SFGY    +LFK++N  + +DSRIA  G NG GK+T+LKL
Sbjct:   518 FKFAEPDSISAP-ILQLQDVSFGYDTNKMLFKDVNLDVQMDSRIAFCGGNGTGKTTLLKL 576

Query:    75 IAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF 134
             +  +L P+SG V ++ ++RI  F+QHHVD +DL+ + + +M + FPG  +++ R HLGSF
Sbjct:   577 VMDQLSPTSGYVNKNGRLRIGYFAQHHVDAMDLTLSAVSWMSQAFPGKTDEEYRRHLGSF 636

Query:   135 GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQ 194
             G+TG+L LQ M  LSGGQKSRVAFA +   +PHI++LDEPSNHLD   ++AL   L  F+
Sbjct:   637 GITGSLGLQKMQLLSGGQKSRVAFAALCLNQPHILVLDEPSNHLDTQGLDALADALKNFK 696

Query:   195 GGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK-MLQS 238
             GG+LMVSHD  +I     E+WV        F G  + YKK +L+S
Sbjct:   697 GGVLMVSHDVSIIDRVCNEIWVAENNTIFKFPGDIYAYKKHILES 741

GO:0005524 "ATP binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8H0V6	AB3F_ARATH	No assigned EC number	0.9075	0.9958	0.3328	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	239
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	0.0
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	1e-85
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	9e-58
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	1e-54
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	6e-48
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	1e-42
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	3e-32
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	4e-32
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	8e-32
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	6e-31
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	1e-30
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	2e-30
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	3e-30
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	5e-30
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	6e-29
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	4e-27
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	2e-26
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	4e-25
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	5e-25
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	7e-25
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	9e-25
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	1e-24
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	2e-24
COG4988	559	COG4988, CydD, ABC-type transport system involved	3e-24
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	1e-23
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	2e-23
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	6e-23
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	8e-23
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	6e-22
PRK09544	251	PRK09544, znuC, high-affinity zinc transporter ATP	1e-21
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	1e-21
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	2e-21
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	3e-21
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	3e-21
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	5e-21
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	6e-21
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	9e-21
COG4133	209	COG4133, CcmA, ABC-type transport system involved	2e-20
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	3e-20
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	4e-20
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	4e-20
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	5e-20
pfam00005	119	pfam00005, ABC_tran, ABC transporter	8e-20
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	1e-19
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	2e-19
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	3e-19
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	5e-19
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	6e-19
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	7e-19
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	2e-18
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	2e-18
COG4987	573	COG4987, CydC, ABC-type transport system involved	3e-18
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	3e-18
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	3e-18
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	4e-18
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	6e-18
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	1e-17
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	1e-17
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	1e-17
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	3e-17
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	4e-17
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	8e-17
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	8e-17
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	1e-16
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	1e-16
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	1e-16
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	2e-16
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	2e-16
PRK13538	204	PRK13538, PRK13538, cytochrome c biogenesis protei	4e-16
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	6e-16
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	8e-16
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	1e-15
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	1e-15
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	2e-15
COG5265	497	COG5265, ATM1, ABC-type transport system involved	2e-15
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	2e-15
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	4e-15
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	4e-15
cd03291	282	cd03291, ABCC_CFTR1, ATP-binding cassette domain o	5e-15
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	5e-15
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	6e-15
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	6e-15
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	6e-15
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	7e-15
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	8e-15
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	8e-15
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	1e-14
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	3e-14
COG1123	539	COG1123, COG1123, ATPase components of various ABC	3e-14
PRK10253	265	PRK10253, PRK10253, iron-enterobactin transporter	3e-14
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	3e-14
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	3e-14
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	3e-14
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	3e-14
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	4e-14
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	5e-14
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	5e-14
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	6e-14
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	7e-14
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	7e-14
PRK10908	222	PRK10908, PRK10908, cell division protein FtsE; Pr	7e-14
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	7e-14
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	8e-14
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	8e-14
PRK13543	214	PRK13543, PRK13543, cytochrome c biogenesis protei	8e-14
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	9e-14
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	1e-13
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	1e-13
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	1e-13
cd03237	246	cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin	1e-13
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	2e-13
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	2e-13
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	2e-13
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	2e-13
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	2e-13
PRK10247	225	PRK10247, PRK10247, putative ABC transporter ATP-b	3e-13
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	6e-13
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	8e-13
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	1e-12
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	1e-12
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	1e-12
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	1e-12
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	1e-12
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	1e-12
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	2e-12
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	2e-12
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	2e-12
PRK13641	287	PRK13641, cbiO, cobalt transporter ATP-binding sub	2e-12
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	2e-12
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	2e-12
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	3e-12
cd03369	207	cd03369, ABCC_NFT1, ATP-binding cassette domain 2	3e-12
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	3e-12
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	3e-12
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	3e-12
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	4e-12
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	5e-12
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	5e-12
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	6e-12
PRK13646	286	PRK13646, cbiO, cobalt transporter ATP-binding sub	6e-12
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	7e-12
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	8e-12
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	9e-12
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	1e-11
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	1e-11
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	1e-11
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	1e-11
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	1e-11
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	1e-11
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	1e-11
PRK13633	280	PRK13633, PRK13633, cobalt transporter ATP-binding	2e-11
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	2e-11
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	2e-11
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	2e-11
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	3e-11
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	3e-11
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	3e-11
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	3e-11
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	4e-11
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	5e-11
PRK11247	257	PRK11247, ssuB, aliphatic sulfonates transport ATP	5e-11
PRK13540	200	PRK13540, PRK13540, cytochrome c biogenesis protei	6e-11
TIGR00954	659	TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra	6e-11
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	7e-11
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	7e-11
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	7e-11
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	7e-11
PRK09984	262	PRK09984, PRK09984, phosphonate/organophosphate es	1e-10
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	2e-10
PRK13638	271	PRK13638, cbiO, cobalt transporter ATP-binding sub	2e-10
PRK11300	255	PRK11300, livG, leucine/isoleucine/valine transpor	2e-10
cd03236	255	cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin	2e-10
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	2e-10
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	3e-10
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	3e-10
PRK11831	269	PRK11831, PRK11831, putative ABC transporter ATP-b	6e-10
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	6e-10
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	7e-10
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	7e-10
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	9e-10
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	1e-09
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	1e-09
smart00382	148	smart00382, AAA, ATPases associated with a variety	1e-09
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	1e-09
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	1e-09
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	2e-09
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	2e-09
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	3e-09
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	3e-09
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	3e-09
COG4615	546	COG4615, PvdE, ABC-type siderophore export system,	4e-09
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	4e-09
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	4e-09
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	4e-09
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	4e-09
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	4e-09
COG4167	267	COG4167, SapF, ABC-type antimicrobial peptide tran	6e-09
PRK13643	288	PRK13643, cbiO, cobalt transporter ATP-binding sub	7e-09
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	1e-08
PRK15112	267	PRK15112, PRK15112, antimicrobial peptide ABC syst	1e-08
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	1e-08
PRK13547	272	PRK13547, hmuV, hemin importer ATP-binding subunit	1e-08
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	2e-08
cd03222	177	cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett	2e-08
PRK13644	274	PRK13644, cbiO, cobalt transporter ATP-binding sub	2e-08
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	2e-08
PRK13545	549	PRK13545, tagH, teichoic acids export protein ATP-	3e-08
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	4e-08
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	4e-08
PRK11000	369	PRK11000, PRK11000, maltose/maltodextrin transport	4e-08
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	4e-08
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	6e-08
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	6e-08
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	6e-08
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	6e-08
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	6e-08
TIGR02770	230	TIGR02770, nickel_nikD, nickel import ATP-binding	7e-08
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	8e-08
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	9e-08
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	1e-07
PRK10522	547	PRK10522, PRK10522, multidrug transporter membrane	1e-07
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	1e-07
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	2e-07
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	2e-07
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	2e-07
PRK14239	252	PRK14239, PRK14239, phosphate transporter ATP-bind	2e-07
PRK13541	195	PRK13541, PRK13541, cytochrome c biogenesis protei	2e-07
PRK11650	356	PRK11650, ugpC, glycerol-3-phosphate transporter A	2e-07
PRK11701	258	PRK11701, phnK, phosphonate C-P lyase system prote	2e-07
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	2e-07
COG4138	248	COG4138, BtuD, ABC-type cobalamin transport system	2e-07
PRK14244	251	PRK14244, PRK14244, phosphate ABC transporter ATP-	2e-07
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	2e-07
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	3e-07
PRK14268	258	PRK14268, PRK14268, phosphate ABC transporter ATP-	3e-07
cd03240	204	cd03240, ABC_Rad50, ATP-binding cassette domain of	3e-07
cd03289	275	cd03289, ABCC_CFTR2, ATP-binding cassette domain 2	3e-07
COG2401	593	COG2401, COG2401, ABC-type ATPase fused to a predi	3e-07
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	4e-07
PRK11144	352	PRK11144, modC, molybdate transporter ATP-binding	5e-07
PRK13546	264	PRK13546, PRK13546, teichoic acids export protein	6e-07
PRK14255	252	PRK14255, PRK14255, phosphate ABC transporter ATP-	7e-07
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	7e-07
TIGR02769	265	TIGR02769, nickel_nikE, nickel import ATP-binding	8e-07
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	8e-07
PRK14238	271	PRK14238, PRK14238, phosphate transporter ATP-bind	9e-07
cd03290	218	cd03290, ABCC_SUR1_N, ATP-binding cassette domain	1e-06
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	1e-06
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	2e-06
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	2e-06
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	2e-06
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	2e-06
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	2e-06
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	2e-06
PRK10419	268	PRK10419, nikE, nickel transporter ATP-binding pro	2e-06
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	2e-06
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	2e-06
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	2e-06
COG1123	539	COG1123, COG1123, ATPase components of various ABC	3e-06
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	3e-06
cd03238	176	cd03238, ABC_UvrA, ATP-binding cassette domain of	3e-06
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	3e-06
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	3e-06
PRK14253	249	PRK14253, PRK14253, phosphate ABC transporter ATP-	3e-06
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	3e-06
PRK10790	592	PRK10790, PRK10790, putative multidrug transporter	3e-06
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	3e-06
PRK11153	343	PRK11153, metN, DL-methionine transporter ATP-bind	4e-06
PRK14258	261	PRK14258, PRK14258, phosphate ABC transporter ATP-	4e-06
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	5e-06
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	5e-06
PRK11614	237	PRK11614, livF, leucine/isoleucine/valine transpor	5e-06
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	5e-06
PRK10584	228	PRK10584, PRK10584, putative ABC transporter ATP-b	5e-06
TIGR01978	243	TIGR01978, sufC, FeS assembly ATPase SufC	9e-06
PRK14262	250	PRK14262, PRK14262, phosphate ABC transporter ATP-	9e-06
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	1e-05
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	1e-05
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	1e-05
PRK14272	252	PRK14272, PRK14272, phosphate ABC transporter ATP-	1e-05
PRK14245	250	PRK14245, PRK14245, phosphate ABC transporter ATP-	2e-05
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	2e-05
PRK14252	265	PRK14252, PRK14252, phosphate ABC transporter ATP-	2e-05
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	2e-05
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	3e-05
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	3e-05
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	3e-05
PRK14266	250	PRK14266, PRK14266, phosphate ABC transporter ATP-	4e-05
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	4e-05
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	4e-05
PRK13642	277	PRK13642, cbiO, cobalt transporter ATP-binding sub	5e-05
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	5e-05
cd03215	182	cd03215, ABC_Carb_Monos_II, Second domain of the A	5e-05
PRK14275	286	PRK14275, PRK14275, phosphate ABC transporter ATP-	6e-05
PRK14248	268	PRK14248, PRK14248, phosphate ABC transporter ATP-	6e-05
PRK14257	329	PRK14257, PRK14257, phosphate ABC transporter ATP-	6e-05
PRK14273	254	PRK14273, PRK14273, phosphate ABC transporter ATP-	7e-05
PRK14274	259	PRK14274, PRK14274, phosphate ABC transporter ATP-	7e-05
PRK13631	320	PRK13631, cbiO, cobalt transporter ATP-binding sub	8e-05
PRK13645	289	PRK13645, cbiO, cobalt transporter ATP-binding sub	8e-05
PRK14271	276	PRK14271, PRK14271, phosphate ABC transporter ATP-	8e-05
COG4598	256	COG4598, HisP, ABC-type histidine transport system	9e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	9e-05
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	1e-04
PRK14237	267	PRK14237, PRK14237, phosphate transporter ATP-bind	1e-04
PRK14243	264	PRK14243, PRK14243, phosphate transporter ATP-bind	1e-04
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	2e-04
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	2e-04
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	2e-04
PRK14259	269	PRK14259, PRK14259, phosphate ABC transporter ATP-	2e-04
PRK10744	260	PRK10744, pstB, phosphate transporter ATP-binding	2e-04
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	2e-04
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	3e-04
PRK14249	251	PRK14249, PRK14249, phosphate ABC transporter ATP-	3e-04
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	3e-04
TIGR00630	925	TIGR00630, uvra, excinuclease ABC, A subunit	4e-04
PRK14254	285	PRK14254, PRK14254, phosphate ABC transporter ATP-	4e-04
PRK14269	246	PRK14269, PRK14269, phosphate ABC transporter ATP-	4e-04
PRK14256	252	PRK14256, PRK14256, phosphate ABC transporter ATP-	4e-04
PRK14267	253	PRK14267, PRK14267, phosphate ABC transporter ATP-	5e-04
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	6e-04
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	6e-04
pfam13304	256	pfam13304, AAA_21, AAA domain	7e-04
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	8e-04
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	8e-04
PRK14251	251	PRK14251, PRK14251, phosphate ABC transporter ATP-	8e-04
PRK14247	250	PRK14247, PRK14247, phosphate ABC transporter ATP-	8e-04
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	0.001
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	0.001
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	0.001
PRK14270	251	PRK14270, PRK14270, phosphate ABC transporter ATP-	0.001
PRK14235	267	PRK14235, PRK14235, phosphate transporter ATP-bind	0.001
PRK14260	259	PRK14260, PRK14260, phosphate ABC transporter ATP-	0.001
CHL00131	252	CHL00131, ycf16, sulfate ABC transporter protein;	0.001
PRK00635	1809	PRK00635, PRK00635, excinuclease ABC subunit A; Pr	0.001
PRK00635	1809	PRK00635, PRK00635, excinuclease ABC subunit A; Pr	0.001
PRK09473	330	PRK09473, oppD, oligopeptide transporter ATP-bindi	0.001
PRK14240	250	PRK14240, PRK14240, phosphate transporter ATP-bind	0.001
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	0.002
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	0.002
PRK11022	326	PRK11022, dppD, dipeptide transporter ATP-binding	0.002
PRK14236	272	PRK14236, PRK14236, phosphate transporter ATP-bind	0.002
PRK14264	305	PRK14264, PRK14264, phosphate ABC transporter ATP-	0.002
PRK14265	274	PRK14265, PRK14265, phosphate ABC transporter ATP-	0.002
PRK14261	253	PRK14261, PRK14261, phosphate ABC transporter ATP-	0.002
PRK01156	895	PRK01156, PRK01156, chromosome segregation protein	0.002
PRK14241	258	PRK14241, PRK14241, phosphate transporter ATP-bind	0.002
cd03271	261	cd03271, ABC_UvrA_II, ATP-binding cassette domain	0.002
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	0.002
PRK14242	253	PRK14242, PRK14242, phosphate transporter ATP-bind	0.003
TIGR00606	1311	TIGR00606, rad50, rad50	0.003

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score =  545 bits (1407), Expect = 0.0
 Identities = 228/238 (95%), Positives = 235/238 (98%)

Query: 1   MGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAM 60
           +GHVD VVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGP+LFKNLNFGIDLDSRIAM
Sbjct: 481 LGHVDAVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAM 540

Query: 61  VGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP 120
           VGPNGIGKSTILKLI+GELQPSSGTVFRSAKVR+AVFSQHHVDGLDLSSNPLLYMMRCFP
Sbjct: 541 VGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFP 600

Query: 121 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 180
           GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI+LLDEPSNHLDL
Sbjct: 601 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDL 660

Query: 181 DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQS 238
           DAVEALIQGLVLFQGG+LMVSHDEHLISGSV+ELWVVSEGK TPFHGTFHDYKK LQS
Sbjct: 661 DAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYKKTLQS 718

Length = 718

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score =  263 bits (674), Expect = 1e-85
 Identities = 101/222 (45%), Positives = 141/222 (63%), Gaps = 2/222 (0%)

Query: 13  YKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTIL 72
             F FP P  R G  ++ F + S GY GG +L K+L+F ID   RIA+VGPNG GKST+L
Sbjct: 306 LAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLL 365

Query: 73  KLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG 132
           KL+AGEL P SGTV     V+I  F QH  D LD     L  +   FP   EQ++RA+LG
Sbjct: 366 KLLAGELGPLSGTVKVGETVKIGYFDQHR-DELDPDKTVLEELSEGFPDGDEQEVRAYLG 424

Query: 133 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL 192
            FG TG    +P+  LSGG+K+R+  AK+  + P+++LLDEP+NHLD++++EAL + L+ 
Sbjct: 425 RFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD 484

Query: 193 FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234
           F+G +L+VSHD + +      +W+V E K   F G + DY +
Sbjct: 485 FEGTVLLVSHDRYFLDRVATRIWLV-EDKVEEFEGGYEDYLE 525

Length = 530

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score =  193 bits (491), Expect = 9e-58
 Identities = 91/234 (38%), Positives = 145/234 (61%), Gaps = 7/234 (2%)

Query: 3   HVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVG 62
           HVD    +P + F F  P+  P P ++     S GY G  I+  ++   +   SRI ++G
Sbjct: 293 HVD----NP-FHFSFRAPESLPNP-LLKMEKVSAGY-GDRIILDSIKLNLVPGSRIGLLG 345

Query: 63  PNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGV 122
            NG GKST++KL+AGEL P SG +  +  +++  F+QH ++ L    +PL ++ R  P  
Sbjct: 346 RNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQE 405

Query: 123 PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA 182
            EQKLR +LG FG  G+   +     SGG+K+R+  A I +++P+++LLDEP+NHLDLD 
Sbjct: 406 LEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDM 465

Query: 183 VEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKML 236
            +AL + L+ F+G +++VSHD HL+  + ++L++V +GK  PF G   DY++ L
Sbjct: 466 RQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQWL 519

Length = 638

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score =  171 bits (437), Expect = 1e-54
 Identities = 64/193 (33%), Positives = 97/193 (50%), Gaps = 49/193 (25%)

Query: 29  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 88
           I   + S  Y GG +L K+++  I+   RI +VG NG GKST+LKLIAGEL+P  G V  
Sbjct: 1   IELENLSKTY-GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW 59

Query: 89  SAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTL 148
            + V+I  F Q                                                L
Sbjct: 60  GSTVKIGYFEQ------------------------------------------------L 71

Query: 149 SGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLIS 208
           SGG+K R+A AK+  + P+++LLDEP+NHLDL+++EAL + L  + G +++VSHD + + 
Sbjct: 72  SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFLD 131

Query: 209 GSVEELWVVSEGK 221
               ++  + +GK
Sbjct: 132 QVATKIIELEDGK 144

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score =  165 bits (419), Expect = 6e-48
 Identities = 68/244 (27%), Positives = 112/244 (45%), Gaps = 37/244 (15%)

Query: 26  PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 85
             +I+  + S  Y   P L +N++  ++   RI +VG NG GKST+LK++AGEL+P SG 
Sbjct: 1   MSMITLENLSLAYGDRP-LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGE 59

Query: 86  VFRSAKVRIAVFSQHHVDGLDLSS--------NPLLYMMRCFPGV--------------- 122
           V R   +R+   SQ      + +           L  ++                     
Sbjct: 60  VTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAEL 119

Query: 123 -----------PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL 171
                       E +    L   G       +P+ +LSGG + RVA A+   ++P ++LL
Sbjct: 120 EALLEELDGWTLEARAEEALLGLGFPD--EDRPVSSLSGGWRRRVALARALLEEPDLLLL 177

Query: 172 DEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD 231
           DEP+NHLDL+++E L   L  + G +++VSHD + +      +  +  GK TP+ G +  
Sbjct: 178 DEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSS 237

Query: 232 YKKM 235
           Y + 
Sbjct: 238 YLEQ 241

Length = 530

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score =  150 bits (382), Expect = 1e-42
 Identities = 69/209 (33%), Positives = 120/209 (57%), Gaps = 7/209 (3%)

Query: 33  DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV 92
           + + G+  GP LFKNLN  ++   R+A++G NG+GK+T+L+ + GEL+P SGTV  S   
Sbjct: 324 NLTKGFDNGP-LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENA 382

Query: 93  RIAVFSQHHVDGLDLSSNPLLYMMRCF--PGVPEQKLRAHLGSFGVTGNLALQPMYTLSG 150
            I  ++Q H    +     L   M  +   G  EQ +R  LG    + +   + +  LSG
Sbjct: 383 NIGYYAQDHAYDFENDLT-LFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSG 441

Query: 151 GQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGS 210
           G+K R+ F K+  +KP+++++DEP+NH+D++++E+L   L  ++G ++ VSHD   +S  
Sbjct: 442 GEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSL 501

Query: 211 VEELWVVSEGKATPFHGTFHDYKKMLQSR 239
              +  ++      F GT+ +Y   L+S+
Sbjct: 502 ATRIIEITPDGVVDFSGTYEEY---LRSQ 527

Length = 530

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score =  115 bits (290), Expect = 3e-32
 Identities = 64/194 (32%), Positives = 105/194 (54%), Gaps = 25/194 (12%)

Query: 32  SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK 91
            + S GY G  +L  +L+  I+    + ++GPNG GKST+LK +AG L+PSSG +     
Sbjct: 3   ENLSVGYGGRTVL-DDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEI----- 56

Query: 92  VRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGG 151
                     +DG DL+S     + R    VP Q L       G+  +LA +P   LSGG
Sbjct: 57  ---------LLDGKDLASLSPKELARKIAYVP-QALEL----LGLA-HLADRPFNELSGG 101

Query: 152 QKSRVAFAKITFKKPHIILLDEPSNHLDL---DAVEALIQGLVLFQG-GILMVSHDEHLI 207
           ++ RV  A+   ++P I+LLDEP++HLD+     +  L++ L   +G  ++MV HD +L 
Sbjct: 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161

Query: 208 SGSVEELWVVSEGK 221
           +   + + ++ +G+
Sbjct: 162 ARYADRVILLKDGR 175

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score =  122 bits (309), Expect = 4e-32
 Identities = 69/231 (29%), Positives = 115/231 (49%), Gaps = 39/231 (16%)

Query: 22  DRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP 81
            R G  +    + ++   G   L K+ +  +    +IA++GPNG GK+T+LKL+ G+LQ 
Sbjct: 313 SRSGKIVFEMENVNYQIDG-KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA 371

Query: 82  SSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG--------- 132
            SG +    K+ +A F QH  + LD                PE+ +  +L          
Sbjct: 372 DSGRIHCGTKLEVAYFDQHRAE-LD----------------PEKTVMDNLAEGKQEVMVN 414

Query: 133 --SFGVTGNL---------ALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD 181
                V G L         A+ P+  LSGG+++R+  A++  K  ++++LDEP+N LD++
Sbjct: 415 GRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVE 474

Query: 182 AVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVS-EGKATPFHGTFHD 231
            +E L + L  +QG +L+VSHD   +  +V E W+    GK   + G +HD
Sbjct: 475 TLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHD 525

Length = 635

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score =  113 bits (286), Expect = 8e-32
 Identities = 62/195 (31%), Positives = 98/195 (50%), Gaps = 41/195 (21%)

Query: 30  SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 89
              + SF Y G   L  N++  +     +A+VGPNG GKST+L+ IAG L+P+SG +   
Sbjct: 1   EIENLSFRYGGRTAL-DNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEI--- 56

Query: 90  AKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLS 149
                       +DG D++  PL            ++LR  +G          Q    LS
Sbjct: 57  -----------LIDGKDIAKLPL------------EELRRRIG-------YVPQ----LS 82

Query: 150 GGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV-LFQGG--ILMVSHDEHL 206
           GGQ+ RVA A+     P ++LLDEP++ LD  + E L++ L  L + G  +++V+HD  L
Sbjct: 83  GGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPEL 142

Query: 207 ISGSVEELWVVSEGK 221
              + + + V+ +GK
Sbjct: 143 AELAADRVIVLKDGK 157

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score =  114 bits (287), Expect = 6e-31
 Identities = 67/209 (32%), Positives = 99/209 (47%), Gaps = 43/209 (20%)

Query: 27  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86
            ++   + SFGY G PIL  +L+F I       ++GPNG GKST+LK +AG L+P SG V
Sbjct: 1   MMLEVENLSFGYGGKPIL-DDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59

Query: 87  F--------RSAKV---RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFG 135
                     S K    ++A   Q       L+   L+ + R            HLG FG
Sbjct: 60  LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGR----------YPHLGLFG 109

Query: 136 VTG-----------------NLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 178
                               +LA +P+  LSGG++ RV  A+   ++  I+LLDEP++HL
Sbjct: 110 RPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHL 169

Query: 179 DL---DAVEALIQGLVLFQG-GILMVSHD 203
           D+     V  L++ L   +G  ++MV HD
Sbjct: 170 DIAHQIEVLELLRDLNREKGLTVVMVLHD 198

Length = 258

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score =  112 bits (282), Expect = 1e-30
 Identities = 61/203 (30%), Positives = 97/203 (47%), Gaps = 21/203 (10%)

Query: 30  SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 89
              D +  Y G P+L ++++F +     +A+VGPNG GKST+LK I G L+P+SG++   
Sbjct: 1   EVEDLTVSYGGHPVL-EDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVF 59

Query: 90  AK------VRIAVFSQHH-------VDGLDLSSNPLLYMMRCFPGVPE---QKLRAHLGS 133
            K       RI    Q         +   D+    L      F  + +    K+   L  
Sbjct: 60  GKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALER 119

Query: 134 FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL-VL 192
            G++  LA + +  LSGGQ+ RV  A+   + P ++LLDEP   +D    E + + L  L
Sbjct: 120 VGLSE-LADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLREL 178

Query: 193 FQGG--ILMVSHDEHLISGSVEE 213
            + G  IL+V+HD  L+    + 
Sbjct: 179 RREGMTILVVTHDLGLVLEYFDR 201

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score =  111 bits (280), Expect = 2e-30
 Identities = 68/226 (30%), Positives = 100/226 (44%), Gaps = 49/226 (21%)

Query: 30  SFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 88
              + SF YP G      +++  I     + +VGPNG GKST+L+L+ G L P+SG V  
Sbjct: 1   ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL- 59

Query: 89  SAKVRIAVFSQHHVDGLDLSSNPL-----------------LYMMRCFP---------GV 122
                        VDG DL+   L                  +               G+
Sbjct: 60  -------------VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGL 106

Query: 123 PE----QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 178
           PE    +++   L   G+ G L  +  +TLSGGQK RVA A +    P I+LLDEP+  L
Sbjct: 107 PEEEIEERVEEALELVGLEG-LRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGL 165

Query: 179 DLDAVEALIQGLV-LFQGG--ILMVSHDEHLISGSVEELWVVSEGK 221
           D      L++ L  L   G  I++V+HD  L+    + + V+ +GK
Sbjct: 166 DPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score =  112 bits (282), Expect = 3e-30
 Identities = 60/204 (29%), Positives = 97/204 (47%), Gaps = 23/204 (11%)

Query: 26  PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 85
            P+I   + +  Y   P+L ++++  ++     A++GPNG GKST+LK I G L+PSSG 
Sbjct: 2   MPMIEVENLTVSYGNRPVL-EDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGE 60

Query: 86  VFRSAKV--------RIAVFSQH-HVD-GLDLSSNPLLYMMR--------CFPGVPEQKL 127
           +    K         RI    Q   VD    ++   ++ + R              ++K+
Sbjct: 61  IKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKV 120

Query: 128 RAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALI 187
              L   G+   L  + +  LSGGQK RV  A+   + P ++LLDEP   +D+   + + 
Sbjct: 121 DEALERVGMED-LRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIY 179

Query: 188 QGL-VLFQGG--ILMVSHDEHLIS 208
             L  L Q G  +LMV+HD  L+ 
Sbjct: 180 DLLKELRQEGKTVLMVTHDLGLVM 203

Length = 254

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  111 bits (280), Expect = 5e-30
 Identities = 73/231 (31%), Positives = 108/231 (46%), Gaps = 52/231 (22%)

Query: 27  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86
            +I   + SF YPG     K+++  I+   R+ ++GPNG GKST+LKL+ G L+P+SG V
Sbjct: 2   RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61

Query: 87  FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR-----------------------CFP--- 120
                          VDGLD SS   L  +R                        F    
Sbjct: 62  L--------------VDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLEN 107

Query: 121 -GVPEQKLRAH----LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS 175
            G+P +++       L   G+   L  +P + LSGGQK RVA A +    P I+LLDEP+
Sbjct: 108 LGLPREEIEERVAEALELVGLEE-LLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPT 166

Query: 176 NHLDLDAVE---ALIQGLVLFQGG--ILMVSHDEHLISGSVEELWVVSEGK 221
             LD         L++ L   +GG  I++V+HD  L+    + + V+ +GK
Sbjct: 167 AGLDPKGRRELLELLKKLKE-EGGKTIIIVTHDLELVLEYADRVVVLDDGK 216

Length = 235

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score =  106 bits (268), Expect = 6e-29
 Identities = 56/196 (28%), Positives = 98/196 (50%), Gaps = 28/196 (14%)

Query: 29  ISFSDASFGYPGGP-ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           I F + SF YPG P  + K+++  I    ++A+VGP+G GKST+LKL+     P+SG + 
Sbjct: 1   IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60

Query: 88  RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYT 147
                         +DG+DL    L  + +    VP+      L S  +  N+       
Sbjct: 61  --------------IDGVDLRDLDLESLRKNIAYVPQD---PFLFSGTIRENI------- 96

Query: 148 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGG--ILMVSHDEH 205
           LSGGQ+ R+A A+   + P I++LDE ++ LD +    +++ L     G  +++++H   
Sbjct: 97  LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLS 156

Query: 206 LISGSVEELWVVSEGK 221
            I    + + V+ +G+
Sbjct: 157 TIR-DADRIIVLDDGR 171

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score =  108 bits (272), Expect = 4e-27
 Identities = 70/230 (30%), Positives = 114/230 (49%), Gaps = 31/230 (13%)

Query: 20  PDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL 79
           P  R G  +I   + S G+ G  +L  +L+F +     + ++GPNG GKST+ ++I G+ 
Sbjct: 314 PGPRLGDKVIEAENLSKGF-GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQE 372

Query: 80  QPSSGTVFRSAKVRIAVFSQHHVDGLDLS-------SNPLLYMMRCFPGVPEQKLRAHLG 132
           QP SGT+     V++A   Q   D LD +       S  L  +     G  E   RA++G
Sbjct: 373 QPDSGTIKIGETVKLAYVDQSR-DALDPNKTVWEEISGGLDIIQL---GKREVPSRAYVG 428

Query: 133 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL 192
            F   G+   + +  LSGG+++RV  AK      +++LLDEP+N LD++ + AL + L+ 
Sbjct: 429 RFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLE 488

Query: 193 FQGGILMVSHDE--------HLIS--GSVEELWVVSEGKATPFHGTFHDY 232
           F G  +++SHD         H+++  G     W         F G + +Y
Sbjct: 489 FAGCAVVISHDRWFLDRIATHILAFEGDSHVEW---------FEGNYSEY 529

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score =   99 bits (250), Expect = 2e-26
 Identities = 57/198 (28%), Positives = 100/198 (50%), Gaps = 29/198 (14%)

Query: 29  ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           +   + SF YPG  P + +N++F I+    +A++GP+G GKST+ +LI G L+P+SG V 
Sbjct: 1   LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV- 59

Query: 88  RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYT 147
                         +DG D+S      +      +P Q      GS  +  N+       
Sbjct: 60  -------------RLDGADISQWDPNELGDHVGYLP-QDDELFSGS--IAENI------- 96

Query: 148 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD---AVEALIQGLVLFQGGILMVSHDE 204
           LSGGQ+ R+  A+  +  P I++LDEP++HLD++   A+   I  L       ++++H  
Sbjct: 97  LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP 156

Query: 205 HLISGSVEELWVVSEGKA 222
             ++ S + + V+ +G+ 
Sbjct: 157 ETLA-SADRILVLEDGRV 173

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score =  102 bits (256), Expect = 4e-25
 Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 29/214 (13%)

Query: 16  EFPTPDDR-PGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKL 74
             P       G P +   D S GYPG P +   ++  +    R+A++GP+G GKST+L  
Sbjct: 321 SAPAAGAVGLGKPTLELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLAT 380

Query: 75  IAGELQPSSGTV---------FRSAKVR--IAVFSQH-HVDGLDLSSNPLLYMMRCFPGV 122
           +AG L P  G V             +VR  ++V +Q  H+    +  N  L      P  
Sbjct: 381 LAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLAR----PDA 436

Query: 123 PEQKLRAHLGSFGVTGNLALQP--MYT--------LSGGQKSRVAFAKITFKKPHIILLD 172
            +++L A L   G+   L   P  + T        LSGG++ R+A A+       I+LLD
Sbjct: 437 TDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLD 496

Query: 173 EPSNHLDLDAVEALIQGL--VLFQGGILMVSHDE 204
           EP+ HLD +  + L++ L   L    +++++H  
Sbjct: 497 EPTEHLDAETADELLEDLLAALSGRTVVLITHHL 530

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 97.1 bits (242), Expect = 5e-25
 Identities = 61/197 (30%), Positives = 93/197 (47%), Gaps = 34/197 (17%)

Query: 38  YPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV----------- 86
           YPGGP + K LNF  +    +A++G NG GKST+L  + G L+P SG V           
Sbjct: 1   YPGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSR 60

Query: 87  --FRSAKVRIAVFSQHHVDGL-------DLSSNPLLYMMRCFPGVPEQKLRAH----LGS 133
                 + R+ +  Q   D L       D++  PL        G+ E ++       L +
Sbjct: 61  KGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNL------GLSEAEVERRVREALTA 114

Query: 134 FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE---ALIQGL 190
            G +G L  +P + LSGG+K RVA A     +P ++LLDEP+  LD    E   A+++ L
Sbjct: 115 VGASG-LRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRL 173

Query: 191 VLFQGGILMVSHDEHLI 207
                 +++ +HD  L 
Sbjct: 174 RAEGMTVVISTHDVDLA 190

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 98.5 bits (246), Expect = 7e-25
 Identities = 58/179 (32%), Positives = 85/179 (47%), Gaps = 27/179 (15%)

Query: 27  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86
            +I   + S  YPGG    K++N  I+    +A++GP+G GKST+L+ + G + P+SG +
Sbjct: 2   MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61

Query: 87  F--------------RSAKVRIAVFSQHH--VDGLDLSSNPLLYMM------RCFPGVP- 123
                          R  +  I +  Q    V  L +  N LL  +      R   G+  
Sbjct: 62  LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFS 121

Query: 124 -EQKLRAH--LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
            E K +A   L   G+  + A Q   TLSGGQ+ RVA A+   ++P IIL DEP   LD
Sbjct: 122 KEDKAQALDALERVGI-LDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLD 179

Length = 258

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 97.2 bits (243), Expect = 9e-25
 Identities = 62/195 (31%), Positives = 91/195 (46%), Gaps = 28/195 (14%)

Query: 37  GYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF--------- 87
           G      L K++N  I+    +A+VGP+G GKST+L L+ G  +P+SG V          
Sbjct: 14  GGEKVEAL-KDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKL 72

Query: 88  ---RSAKVR---IA-VFSQHH-VDGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSFG 135
                AK+R   I  VF   + +  L +  N  L ++    G      ++     L   G
Sbjct: 73  SEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLL--IAGKSAGRRKRAAEELLEVLG 130

Query: 136 VTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL---DAVEALIQGLVL 192
           +   L  +    LSGGQ+ RVA A+     P IIL DEP+ +LD      V  L++ L  
Sbjct: 131 LEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNK 190

Query: 193 FQG-GILMVSHDEHL 206
            +G  I+MV+HD  L
Sbjct: 191 ERGKTIIMVTHDPEL 205

Length = 226

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score = 95.5 bits (239), Expect = 1e-24
 Identities = 47/202 (23%), Positives = 86/202 (42%), Gaps = 39/202 (19%)

Query: 29  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 88
           I   + S  Y     L  +++  ++      ++GPNG GK+T++K+I G L+P SG +  
Sbjct: 1   IEVRNLSKRYGKKTAL-DDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK- 58

Query: 89  SAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYT- 147
                        V G D+   P              +++  +G   +    +L    T 
Sbjct: 59  -------------VLGKDIKKEPE-------------EVKRRIGY--LPEEPSLYENLTV 90

Query: 148 -----LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEA---LIQGLVLFQGGILM 199
                LSGG K R+A A+     P +++LDEP++ LD ++      L++ L      IL+
Sbjct: 91  RENLKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILL 150

Query: 200 VSHDEHLISGSVEELWVVSEGK 221
            SH         + + +++ G+
Sbjct: 151 SSHILEEAERLCDRVAILNNGR 172

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score =  100 bits (253), Expect = 2e-24
 Identities = 65/196 (33%), Positives = 103/196 (52%), Gaps = 22/196 (11%)

Query: 20  PDDRPGPPIISFSDASFGYPGGPILFKNLNF-----GIDLDSRIAMVGPNGIGKSTILKL 74
           P  R G  +I   + S  + G  +L  +L+F     GI     + ++GPNG GKST+ K+
Sbjct: 316 PGPRLGDKVIEAENLSKSF-GDRLLIDDLSFSLPPGGI-----VGIIGPNGAGKSTLFKM 369

Query: 75  IAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLS-------SNPLLYMMRCFPGVPEQKL 127
           I G+ QP SGT+     V++A   Q   D LD +       S  L  +     G  E   
Sbjct: 370 ITGQEQPDSGTIKIGETVKLAYVDQSR-DALDPNKTVWEEISGGLDIIKV---GNREIPS 425

Query: 128 RAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALI 187
           RA++G F   G    + +  LSGG+++R+  AK   +  +++LLDEP+N LD++ + AL 
Sbjct: 426 RAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALE 485

Query: 188 QGLVLFQGGILMVSHD 203
           + L+ F G  +++SHD
Sbjct: 486 EALLEFPGCAVVISHD 501

Length = 556

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score =  100 bits (250), Expect = 3e-24
 Identities = 60/217 (27%), Positives = 98/217 (45%), Gaps = 30/217 (13%)

Query: 29  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF- 87
           IS  + SF YP G     +LN  I      A+VG +G GKST+L L+ G L P+ G +  
Sbjct: 321 ISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRV 380

Query: 88  ---------RSAKVR-IAVFSQH-HVDGLDLSSNPLLYMMRCFPGVPEQKL-----RAHL 131
                      A  + I+  SQ+ ++    +  N LL      P   ++++     +A L
Sbjct: 381 NGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLAR----PDASDEEIIAALDQAGL 436

Query: 132 GSFGVTGNLALQPMY-----TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 186
             F V     L  +       LSGGQ  R+A A+       ++LLDEP+ HLD +  + +
Sbjct: 437 LEF-VPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQII 495

Query: 187 IQGLV-LFQGGI-LMVSHDEHLISGSVEELWVVSEGK 221
           +Q L  L +    L+++H     +   + + V+  G+
Sbjct: 496 LQALQELAKQKTVLVITHRLEDAAD-ADRIVVLDNGR 531

Length = 559

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 94.1 bits (235), Expect = 1e-23
 Identities = 67/210 (31%), Positives = 97/210 (46%), Gaps = 35/210 (16%)

Query: 29  ISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 84
           I   + S  Y GG      L K ++  I+    +A+VGP+G GKST+L ++ G  +P+SG
Sbjct: 1   IELKNLSKTYGGGGEKVQAL-KGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSG 59

Query: 85  TV-----------------FRSAKVRIAVFSQHH-VDGLDLSSNPLLYMMRCFPGVP--E 124
            V                 FR   +   VF   + +  L    N  L ++    GVP  E
Sbjct: 60  EVRVDGTDISKLSEKELAAFRRRHIGF-VFQSFNLLPDLTALENVELPLL--LAGVPKKE 116

Query: 125 QKLRAH--LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD- 181
           ++ RA   L   G+   L   P   LSGGQ+ RVA A+     P IIL DEP+ +LD + 
Sbjct: 117 RRERAEELLERVGLGDRLNHYPS-ELSGGQQQRVAIARALANDPKIILADEPTGNLDSET 175

Query: 182 --AVEALIQGLVLFQG-GILMVSHDEHLIS 208
              V  L++ L    G  I++V+HD  L  
Sbjct: 176 GKEVMELLRELNKEAGTTIVVVTHDPELAE 205

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score = 94.1 bits (235), Expect = 2e-23
 Identities = 62/229 (27%), Positives = 98/229 (42%), Gaps = 26/229 (11%)

Query: 29  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF- 87
           I     +  + G  +L K ++  +     +A++GP+G GKST+L+LI G L+P SG V  
Sbjct: 1   IELRGLTKSFGGRTVL-KGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLI 59

Query: 88  -------------RSAKVRIAVFSQHHV--DGLDLSSN---PLLYMMRCFPGVPEQKLRA 129
                           + R+ +  Q     D L +  N   PL    R       + +  
Sbjct: 60  DGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLE 119

Query: 130 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDAVEAL 186
            L + G+ G   L P   LSGG K RVA A+     P ++L DEP+  LD      ++ L
Sbjct: 120 KLEAVGLRGAEDLYP-AELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDL 178

Query: 187 IQGL-VLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234
           I+ L        +MV+HD        + + V+ +GK     GT  + + 
Sbjct: 179 IRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGK-IVAEGTPEELRA 226

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 96.2 bits (240), Expect = 6e-23
 Identities = 61/221 (27%), Positives = 96/221 (43%), Gaps = 38/221 (17%)

Query: 18  PTPDDRP----GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILK 73
           P     P      P + FS  S  YPG     + ++F +    R+A+VGP+G GKST+L 
Sbjct: 307 PLAGKAPVTAAPAPSLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLN 366

Query: 74  LIAGELQPSSGTVFRSAKVRIAVFSQHHVDG--LDLSSNPLLY--------MMRCFPGVP 123
           L+ G + P+ G++     V +A             +  +P L+         +   P   
Sbjct: 367 LLLGFVDPTEGSI-AVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLAR-PDAS 424

Query: 124 EQKLRAHLGSFGVTGNLALQPMYT----------LSGGQKSRVAFAKITFKKPHIILLDE 173
           + ++R  L   G+   +A  P             LSGGQ  R+A A+   +   ++LLDE
Sbjct: 425 DAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDE 484

Query: 174 PSNHLD-------LDAVEALIQGLVLFQGGILMVSHDEHLI 207
           P+ HLD       L+A+ AL QG  +     L+V+H   L 
Sbjct: 485 PTAHLDAETEAEVLEALRALAQGRTV-----LLVTHRLALA 520

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 92.8 bits (231), Expect = 8e-23
 Identities = 66/251 (26%), Positives = 102/251 (40%), Gaps = 41/251 (16%)

Query: 3   HVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVG 62
              E+    + K   P        P+I   + S    G  IL  +L++ ++     A+VG
Sbjct: 9   RGVELPEPKEPKKRHPIEI---NEPLIELKNVSVRRNGKKIL-GDLSWQVNPGEHWAIVG 64

Query: 63  PNGIGKSTILKLIAGELQPSSGTV---------------------FRSAKVRIAVFSQHH 101
           PNG GK+T+L L+ GE  PSSG V                       S+++      +  
Sbjct: 65  PNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRET 124

Query: 102 VDGLDLS----SNPLLYMMRCFPGVPEQKLRAH--LGSFGVTGNLALQPMYTLSGGQKSR 155
           V  + LS    S  +           E    A   L   G   +LA +P  +LS G++ R
Sbjct: 125 VRDVVLSGFFASIGIYQE----DLTAEDLAAAQWLLELLGAK-HLADRPFGSLSQGEQRR 179

Query: 156 VAFAKITFKKPHIILLDEPSNHLDLDAVEAL---IQGLVLFQGG--ILMVSHDEHLISGS 210
           V  A+   K P +++LDEP+  LDL A E L   ++ L    G   +L V+H    I   
Sbjct: 180 VLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPC 239

Query: 211 VEELWVVSEGK 221
                ++ EG+
Sbjct: 240 FTHRLLLKEGE 250

Length = 257

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 90.3 bits (225), Expect = 6e-22
 Identities = 53/203 (26%), Positives = 87/203 (42%), Gaps = 38/203 (18%)

Query: 26  PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 85
             ++     S  + G  +L +++N  ++    +A++GP+G GKST+L+LIAG  +P+SG 
Sbjct: 1   MALLEIEGVSKSFGGVEVL-EDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGE 59

Query: 86  VF------RSAKVRIAVFSQHHV--------D----GLDLSSNPLLYMMRCFPGVPEQKL 127
           V             I    Q           D    GL+L                 ++ 
Sbjct: 60  VLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKS--------KAEARERA 111

Query: 128 RAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD-------L 180
           +  L   G+ G     P + LSGG + RVA A+    +P ++LLDEP   LD        
Sbjct: 112 KELLELVGLAGFEDKYP-HQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQ 170

Query: 181 DAVEALIQGLVLFQGGILMVSHD 203
           D +  L +     +  +L+V+HD
Sbjct: 171 DELLRLWEET---RKTVLLVTHD 190

Length = 248

>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed

 Score = 89.8 bits (223), Expect = 1e-21
 Identities = 59/190 (31%), Positives = 94/190 (49%), Gaps = 26/190 (13%)

Query: 32  SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK 91
           SD S     G IL               ++GPNG GKST+++++ G + P  G + R+ K
Sbjct: 21  SDVSLELKPGKIL--------------TLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK 66

Query: 92  VRIAVFSQH-HVDGLDLSSNPLLY--MMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTL 148
           +RI    Q  ++D    ++ PL     +R  PG  ++ +   L      G+L   PM  L
Sbjct: 67  LRIGYVPQKLYLD----TTLPLTVNRFLRLRPGTKKEDILPALKRVQ-AGHLIDAPMQKL 121

Query: 149 SGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD---AVEALIQGL-VLFQGGILMVSHDE 204
           SGG+  RV  A+    +P +++LDEP+  +D++   A+  LI  L       +LMVSHD 
Sbjct: 122 SGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDL 181

Query: 205 HLISGSVEEL 214
           HL+    +E+
Sbjct: 182 HLVMAKTDEV 191

Length = 251

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score = 92.7 bits (231), Expect = 1e-21
 Identities = 62/241 (25%), Positives = 102/241 (42%), Gaps = 62/241 (25%)

Query: 4   VDEVVNDPDYKFEFPTPDDRPGPPI----ISFSDASFGY-PGGPILFKNLNFGIDLDSRI 58
           + ++++ P    E          P     I F + SF Y P  P + ++L+  I    ++
Sbjct: 446 LGDILDTPP---EQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKV 502

Query: 59  AMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRC 118
           A+VG +G GKST+LKL+ G  +P  G +               +DG+DL+   L  + R 
Sbjct: 503 AIVGRSGSGKSTLLKLLLGLYKPQQGRIL--------------LDGVDLNDIDLASLRRQ 548

Query: 119 FPGVPEQKLRAHLGSFGVTGNLAL-------------------------QPM-Y------ 146
              V +      L S  +  N+AL                          PM Y      
Sbjct: 549 VGYVLQD---PFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGE 605

Query: 147 ---TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGG--ILMVS 201
               LSGGQ+ R+A A+    KP I+LLDE ++ LD +    ++Q L+    G  +++++
Sbjct: 606 GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIA 665

Query: 202 H 202
           H
Sbjct: 666 H 666

Length = 709

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 87.8 bits (218), Expect = 2e-21
 Identities = 55/199 (27%), Positives = 96/199 (48%), Gaps = 28/199 (14%)

Query: 29  ISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           +S ++ SF YP     + KNL+  +    +IA++G +G GKST+L+L+ G+L+P  G + 
Sbjct: 1   LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60

Query: 88  RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYT 147
                         +DG+ +S   L   +     V  Q  R +L    +  NL  +    
Sbjct: 61  --------------LDGVPVSD--LEKALSSLISVLNQ--RPYLFDTTLRNNLGRR---- 98

Query: 148 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL--VLFQGGILMVSHDEH 205
            SGG++ R+A A+I  +   I+LLDEP+  LD      L+  +  VL    ++ ++H  H
Sbjct: 99  FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITH--H 156

Query: 206 LISGS-VEELWVVSEGKAT 223
           L     ++++  +  GK  
Sbjct: 157 LTGIEHMDKILFLENGKII 175

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 88.7 bits (220), Expect = 3e-21
 Identities = 56/189 (29%), Positives = 96/189 (50%), Gaps = 31/189 (16%)

Query: 59  AMVGPNGIGKSTILKLIAGELQPSSGTVF-----------RSAKVRIAVFSQHHVDGLDL 107
            ++GPNG GKST+L+L+AG L+P +GTV            R+   R+A+  Q     + L
Sbjct: 31  GLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL 90

Query: 108 SSNPLLYMMRCFPGVPEQKL------------RAHLGSFGVTGNLALQPMYTLSGGQKSR 155
           +   ++ + R    +P + L               L    ++ +LA + M TLSGG++ R
Sbjct: 91  TVRDVVALGR----IPHRSLWAGDSPHDAAVVDRALARTELS-HLADRDMSTLSGGERQR 145

Query: 156 VAFAKITFKKPHIILLDEPSNHLDLDA---VEALIQGLVLFQGGILMVSHDEHLISGSVE 212
           V  A+   ++P ++LLDEP+NHLD+ A     AL++ L      ++   HD +L +   +
Sbjct: 146 VHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCD 205

Query: 213 ELWVVSEGK 221
            + V+  G+
Sbjct: 206 HVVVLDGGR 214

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score = 87.3 bits (217), Expect = 3e-21
 Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 15/189 (7%)

Query: 33  DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF----- 87
           + SF Y  G  +  +L+  +     IA+ G NG GK+T+ K++AG ++ SSG++      
Sbjct: 4   NISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKP 63

Query: 88  RSAKVRI--AVFSQHHVD---GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL 142
             AK R     +    VD     D     LL  ++      EQ     L    +      
Sbjct: 64  IKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQA-ETVLKDLDLYALKER 122

Query: 143 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDAVEALIQGLVLFQGGILM 199
            P+ +LSGGQK R+A A        +++ DEP++ LD   ++ V  LI+ L      +++
Sbjct: 123 HPL-SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIV 181

Query: 200 VSHDEHLIS 208
           ++HD   ++
Sbjct: 182 ITHDYEFLA 190

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 86.9 bits (216), Expect = 5e-21
 Identities = 61/181 (33%), Positives = 85/181 (46%), Gaps = 26/181 (14%)

Query: 40  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQ 99
           GG +LF  L+F +     + + GPNG GK+T+L+LIAG L P++GT+             
Sbjct: 13  GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTI--KLDGGDIDDPD 70

Query: 100 H--------HVDGLDLSSNPLLYMM------RCFPGVPEQKLRAHLGSFGVTGNLALQPM 145
                    H + +     P L +         F G  E  + A L + G+   LA  P 
Sbjct: 71  VAEACHYLGHRNAM----KPALTVAENLEFWAAFLGGEELDIAAALEAVGL-APLAHLPF 125

Query: 146 YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV---LFQGGI-LMVS 201
             LS GQK RVA A++      I +LDEP+  LD  AV AL   L+   L QGGI +  +
Sbjct: 126 GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAV-ALFAELIRAHLAQGGIVIAAT 184

Query: 202 H 202
           H
Sbjct: 185 H 185

Length = 207

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 90.7 bits (226), Expect = 6e-21
 Identities = 66/242 (27%), Positives = 106/242 (43%), Gaps = 48/242 (19%)

Query: 19  TPDDRPG-------PPI---ISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGI 66
            P +RP        P +   I F + SF YPG   P L  N++  I    ++A++G  G 
Sbjct: 444 LPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQETPAL-DNVSLTIRPGEKVAIIGRIGS 502

Query: 67  GKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSN--------PLLY---- 114
           GKST+LKL+ G  QP+ G+      V +       +D  DL  N         L Y    
Sbjct: 503 GKSTLLKLLLGLYQPTEGS------VLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLR 556

Query: 115 ---MMRCFPGVPEQKLRAHLGSFGVTGNLALQPM----------YTLSGGQKSRVAFAKI 161
               +   P   ++++       GVT  +   P            +LSGGQ+  VA A+ 
Sbjct: 557 DNIALGA-PYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARA 615

Query: 162 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGG--ILMVSHDEHLISGSVEELWVVSE 219
             + P I+LLDEP++ +D  + E     L  +  G  +++V+H   L+   V+ + V+  
Sbjct: 616 LLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLD-LVDRIIVMDN 674

Query: 220 GK 221
           G+
Sbjct: 675 GR 676

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 90.2 bits (224), Expect = 9e-21
 Identities = 65/264 (24%), Positives = 109/264 (41%), Gaps = 56/264 (21%)

Query: 18  PTPDDRPGPPI-----ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTIL 72
           P  +D P P       I F + SF YPG   + K+++F I+   ++A+VGP+G GKST++
Sbjct: 313 PEVEDPPDPLKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLI 372

Query: 73  KLIAGELQPSSGTVF-----------RSAKVRIAVFSQHHV-------DGLDLSSNP--- 111
           KL+     P+SG +             S + RI + SQ  +       + + L       
Sbjct: 373 KLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATD 432

Query: 112 --------LLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF 163
                   L         +P       +G  GV           LSGGQ+ R+A A+   
Sbjct: 433 EEIEEALKLANAHEFIANLP-DGYDTIVGERGV----------NLSGGQRQRLAIARALL 481

Query: 164 KKPHIILLDEPSNHLDLDAVEALIQGLVLFQGG--ILMVSHDEHLISGSVEELWVVSEGK 221
           + P I++LDE ++ LD +    +   L     G   L+++H    I    + + V+  G+
Sbjct: 482 RNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN-ADRIIVLDNGR 540

Query: 222 ATPFHGTFHD-------YKKMLQS 238
                GT  +       Y ++ Q+
Sbjct: 541 IV-ERGTHEELLAKGGLYARLYQA 563

Length = 567

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 85.8 bits (213), Expect = 2e-20
 Identities = 51/180 (28%), Positives = 87/180 (48%), Gaps = 17/180 (9%)

Query: 40  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV-FRSAKVRIA--V 96
           G   LF +L+F ++    + + GPNG GK+T+L+++AG L+P +G V ++   ++     
Sbjct: 13  GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRES 72

Query: 97  FSQH-----HVDGL--DLSS--NPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYT 147
           + Q      H  G+  +L++  N L +  R         +   L   G+ G   L P+  
Sbjct: 73  YHQALLYLGHQPGIKTELTALEN-LHFWQRFHGSGNAATIWEALAQVGLAGLEDL-PVGQ 130

Query: 148 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV---EALIQGLVLFQGGILMVSHDE 204
           LS GQ+ RVA A++      + +LDEP   LD + V    AL+       G +L+ +H  
Sbjct: 131 LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQP 190

Length = 209

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 85.7 bits (213), Expect = 3e-20
 Identities = 58/211 (27%), Positives = 90/211 (42%), Gaps = 29/211 (13%)

Query: 16  EFPTPDDRPGPPIISFSDASFGYPGGPILF--KNLNFGIDLDSRIAMVGPNGIGKSTILK 73
           +F    ++           + G       +  K+++F I    R+ ++G NG GKST+LK
Sbjct: 12  KFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLK 71

Query: 74  LIAGELQPSSGTVFRSAKVR----IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLR- 128
           LIAG  +P+SG V  + KV     +       + G +   N  L  +    G+  +++  
Sbjct: 72  LIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRE---NIYLRGL--ILGLTRKEIDE 126

Query: 129 --------AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 180
                   A LG F        QP+ T S G  +R+AF+  T  +P I+LLDE     D 
Sbjct: 127 KVDEIIEFAELGDF------IDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDA 180

Query: 181 DAVE---ALIQGLVLFQGGILMVSHDEHLIS 208
              E     +  LV     I++VSHD   I 
Sbjct: 181 AFQEKCLERLNELVEKNKTIVLVSHDLGAIK 211

Length = 249

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 88.5 bits (220), Expect = 4e-20
 Identities = 54/219 (24%), Positives = 93/219 (42%), Gaps = 42/219 (19%)

Query: 28  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           +IS   A   +   P+L  N    I+ + R+ +VG NG GKST++K++ GE+    G + 
Sbjct: 3   LISIHGAWLSFSDAPLL-DNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRII 61

Query: 88  RSAKVRIA-------------VFS--------------QHHVDGLDLSSNPLLYMMRCFP 120
               + +A             V+               ++H     + ++P    +    
Sbjct: 62  YEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELA 121

Query: 121 GVPEQ-----------KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII 169
            + EQ           ++   L   G+  +     + +LSGG   + A  +     P ++
Sbjct: 122 KLQEQLDHHNLWQLENRINEVLAQLGLDPD---AALSSLSGGWLRKAALGRALVSNPDVL 178

Query: 170 LLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLIS 208
           LLDEP+NHLD++ +E L   L  FQG I+ +SHD   I 
Sbjct: 179 LLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIR 217

Length = 635

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 83.8 bits (208), Expect = 4e-20
 Identities = 55/203 (27%), Positives = 95/203 (46%), Gaps = 35/203 (17%)

Query: 29  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 88
           +   + S  Y    +L  +++  I+    +A++GP+G GKST+L+ IAG  +P SG++  
Sbjct: 1   LELKNVSKRYGQKTVL-NDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL- 58

Query: 89  SAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFG------VTGNLAL 142
                        +DG DL+       +        +++      F       V  N+A 
Sbjct: 59  -------------IDGEDLTD------LEDELPPLRRRIGMVFQDFALFPHLTVLENIA- 98

Query: 143 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL---DAVEALIQGLVLFQG-GIL 198
                LSGGQ+ RVA A+     P ++LLDEP++ LD      V AL++ L    G  ++
Sbjct: 99  ---LGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVV 155

Query: 199 MVSHDEHLISGSVEELWVVSEGK 221
           +V+HD    +   + + V+ +GK
Sbjct: 156 LVTHDLDEAARLADRVVVLRDGK 178

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 84.8 bits (211), Expect = 5e-20
 Identities = 62/214 (28%), Positives = 88/214 (41%), Gaps = 62/214 (28%)

Query: 29  ISFSDASFGYPGGPILFKNLNFGIDLDSR----IAMVGPNGIGKSTILKLIAGELQPSSG 84
           +   + S  Y GG      L   I L       +A+VGP+G GKST+L++IAG  +P+SG
Sbjct: 1   LEVRNVSKTYGGGGGAVTALE-DISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSG 59

Query: 85  TV-FRSAKV------RIAVFSQHHVDGLDLSSNPLLYMMRCFP---------------GV 122
            V      V      R  VF Q  +                 P               GV
Sbjct: 60  EVLVDGEPVTGPGPDRGYVFQQDAL----------------LPWLTVLDNVALGLELQGV 103

Query: 123 PEQKLRAH----LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 178
           P+ + R      L   G++G     P + LSGG + RVA A+     P ++LLDEP + L
Sbjct: 104 PKAEARERAEELLELVGLSGFENAYP-HQLSGGMRQRVALARALAVDPDVLLLDEPFSAL 162

Query: 179 DLDAVEAL----IQGLVL-----FQGGILMVSHD 203
           D     AL    +Q  +L         +L+V+HD
Sbjct: 163 D-----ALTREQLQEELLDIWRETGKTVLLVTHD 191

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 81.2 bits (201), Expect = 8e-20
 Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 17/122 (13%)

Query: 69  STILKLIAGELQPSSGTV------------FRSAKVRIAVFSQHHVDGLDLS--SNPLLY 114
           ST+LKLI G LQP+SGT+             +  + RI V  Q      +L+   N    
Sbjct: 1   STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60

Query: 115 MMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP 174
           +        + +    L   G+   L  +P+ TLSGGQK RVA A+   KKP ++LLDEP
Sbjct: 61  LRD---KEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLDEP 117

Query: 175 SN 176
           + 
Sbjct: 118 TA 119

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score = 85.1 bits (211), Expect = 1e-19
 Identities = 60/236 (25%), Positives = 105/236 (44%), Gaps = 32/236 (13%)

Query: 27  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86
            +I   + +  Y G       ++F ++      ++GPNG GK+T+LK++AG L+P+SG +
Sbjct: 3   EVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62

Query: 87  ----------FRSAKVRIAVFSQ--HHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH---- 130
                         + RI    Q       L +  N  L       G+ +++        
Sbjct: 63  LVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVREN--LEFFARLYGLSKEEAEERIEEL 120

Query: 131 LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL 190
           L  FG+    A + + TLSGG K R++ A      P +++LDEP++ LD ++   + + L
Sbjct: 121 LELFGLEDK-ANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELL 179

Query: 191 VLF--QGG--ILMVSHDEHLISGSVEEL----WVVSEGKATPFHGTFHDYKKMLQS 238
                +GG  IL+ +H    I    EEL     ++++GK     GT  + K+    
Sbjct: 180 RELAKEGGVTILLSTH----ILEEAEELCDRVIILNDGKII-AEGTPEELKEKFGG 230

Length = 293

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 83.4 bits (207), Expect = 2e-19
 Identities = 58/210 (27%), Positives = 93/210 (44%), Gaps = 51/210 (24%)

Query: 29  ISFSDASFGYPGGPIL-FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           I F + SF YP   I    N++  I    ++A++G  G GKST+LKL+AG  +P+SG+V 
Sbjct: 3   IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL 62

Query: 88  RSAKVRIAVFSQHHVDGLD---------------LSSNPLLY--------MMRCFPGVPE 124
                         +DG D               +  +  L+         +       E
Sbjct: 63  --------------LDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDE 108

Query: 125 QKLRAHLGSFGVTGNLALQPM----------YTLSGGQKSRVAFAKITFKKPHIILLDEP 174
           + LRA   + GVT  +   P             LSGGQ+  VA A+     P I+LLDEP
Sbjct: 109 RILRAAELA-GVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEP 167

Query: 175 SNHLDLDAVEALIQGLVLFQGG--ILMVSH 202
           ++ +D+++ E L + L    G   +++++H
Sbjct: 168 TSAMDMNSEERLKERLRQLLGDKTLIIITH 197

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 83.4 bits (207), Expect = 3e-19
 Identities = 57/226 (25%), Positives = 100/226 (44%), Gaps = 27/226 (11%)

Query: 27  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86
           P+I     +  + G  ++   ++  +     +A++G +G GKST+L+LI G L+P  G +
Sbjct: 7   PLIEVRGVTKSF-GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65

Query: 87  F--------------RSAKVRIAVFSQHHV--DGLDLSSNPLLYMMRCFPGVPEQKLRA- 129
                             + R+ V  Q       L +  N + + +R    +PE  +R  
Sbjct: 66  LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFEN-VAFPLREHTKLPESLIREL 124

Query: 130 ---HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDAV 183
               L   G+ G  A      LSGG + RVA A+     P ++ LDEP++ LD      +
Sbjct: 125 VLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVI 184

Query: 184 EALIQGLV-LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGT 228
           + LI+ L       ++MV+HD   +    + + V+++GK     GT
Sbjct: 185 DELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGK-VIAEGT 229

Length = 263

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score = 81.5 bits (202), Expect = 5e-19
 Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 25/187 (13%)

Query: 40  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF---------RSA 90
           G  ++  +LN  I+     A++G +G GKST+L +I    +  SG V+          S 
Sbjct: 9   GDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSK 68

Query: 91  KVR------IAVFSQHH--VDGLDLSSN---PLLYMMRCFPGVPEQKLRAHLGSFGVTGN 139
           K        +    Q+   ++   +  N    L Y  +       +K +  L   G+   
Sbjct: 69  KASKFRREKLGYLFQNFALIENETVEENLDLGLKYK-KLSKKEKREKKKEALEKVGLNLK 127

Query: 140 LALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV-LFQGG-- 196
           L  Q +Y LSGG++ RVA A+   K P +IL DEP+  LD    + ++  L+ L   G  
Sbjct: 128 LK-QKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKT 186

Query: 197 ILMVSHD 203
           I++V+HD
Sbjct: 187 IIIVTHD 193

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 81.4 bits (202), Expect = 6e-19
 Identities = 58/195 (29%), Positives = 92/195 (47%), Gaps = 46/195 (23%)

Query: 40  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQ 99
           G      +L+  ++    +A++GP+G GK+T+L+LIAG  +P SG +             
Sbjct: 11  GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL------------ 58

Query: 100 HHVDGLDLSSNPL----LYMM----RCFP---------------GVPEQKLRAH----LG 132
             +DG D++  P     + M+      FP               GVP+ ++RA     L 
Sbjct: 59  --IDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLE 116

Query: 133 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL---IQG 189
             G+ G L   P + LSGGQ+ RVA A+   ++P ++LLDEP + LD    E L   ++ 
Sbjct: 117 LVGLEGLLNRYP-HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKE 175

Query: 190 LVLFQG-GILMVSHD 203
           L    G   + V+HD
Sbjct: 176 LQRELGITTIYVTHD 190

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 82.3 bits (204), Expect = 7e-19
 Identities = 61/252 (24%), Positives = 104/252 (41%), Gaps = 52/252 (20%)

Query: 27  PIISFSDASFGYPGGPILF---KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS 83
            ++S  + S  Y GG   F    N++  I+    + +VG +G GKST+ +L+AG  +PSS
Sbjct: 2   TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS 61

Query: 84  GTV--------------FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR------CFPGVP 123
           G++                   V++ VF Q        S NP   + R         G+ 
Sbjct: 62  GSILLDGKPLAPKKRAKAFYRPVQM-VF-QDP----YSSLNPRRTVGRILSEPLRPHGLS 115

Query: 124 EQKLRAH--LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD 181
           + + R    L   G+  +   +  + LSGGQ+ R+A A+    +P +++LDEP++ LD  
Sbjct: 116 KSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALD-- 173

Query: 182 AVEALIQGLVL---------FQGGILMVSHDEHLISGSVEELWVVSEGKATP-------F 225
                +Q  +L              L +SHD  L+    + + V+  G+           
Sbjct: 174 ---VSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230

Query: 226 HGTFHDYKKMLQ 237
               H Y + L 
Sbjct: 231 SHPSHPYTRELL 242

Length = 252

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 81.3 bits (201), Expect = 2e-18
 Identities = 69/221 (31%), Positives = 111/221 (50%), Gaps = 34/221 (15%)

Query: 28  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           I+   D  + YP G    K +NF  +    +A++GPNG GKST+     G L+P+SG V 
Sbjct: 1   ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL 60

Query: 88  RSA-----------KVR--IAVFSQHHVDGL-------DLSSNPLLYMMRCFPGVP---- 123
                         +VR  + +  Q+  D L       D++  PL        G+     
Sbjct: 61  IKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL------GLSKEEV 114

Query: 124 EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV 183
           E++++  L + G+ G    +P + LSGGQK RVA A I   KP II+LDEP++ LD    
Sbjct: 115 EKRVKEALKAVGMEG-FENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGA 173

Query: 184 EALIQGLV-LFQGGILMV--SHDEHLISGSVEELWVVSEGK 221
             +++ L  L + GI ++  +HD  L+    ++++V+S+GK
Sbjct: 174 SQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGK 214

Length = 275

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 80.7 bits (200), Expect = 2e-18
 Identities = 62/237 (26%), Positives = 101/237 (42%), Gaps = 69/237 (29%)

Query: 29  ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           I F + +F Y PG P+L K+++F I    ++A+VGP+G GKSTIL+L+      SSG++ 
Sbjct: 1   IEFENVTFAYDPGRPVL-KDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL 59

Query: 88  RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP------------------------ 123
                         +DG D+    L  + R    VP                        
Sbjct: 60  --------------IDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDE 105

Query: 124 ---EQKLRAHLG------SFG---VTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL 171
              E    A +         G   + G   L+    LSGG+K RVA A+   K P I+LL
Sbjct: 106 EVIEAAKAAQIHDKIMRFPDGYDTIVGERGLK----LSGGEKQRVAIARAILKNPPILLL 161

Query: 172 DEPSNHLD-------LDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGK 221
           DE ++ LD         A+  + +G        ++++H    I  + +++ V+ +G+
Sbjct: 162 DEATSALDTHTEREIQAALRDVSKGRTT-----IVIAHRLSTIVNA-DKIIVLKDGR 212

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 83.1 bits (206), Expect = 3e-18
 Identities = 66/260 (25%), Positives = 101/260 (38%), Gaps = 38/260 (14%)

Query: 10  DPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPIL-FKNLNFGIDLDSRIAMVGPNGIGK 68
           D   +  FP          +   + SF YPG      KN N  +    ++A++G +G GK
Sbjct: 318 DQKPEVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGK 377

Query: 69  STILKLIAGELQPSSGTV---------FRSAKVR--IAVFSQ--HHVDGLDLSSNPLL-- 113
           ST+L+L+AG   P  G++              +R  I+V +Q  H   G  L  N  L  
Sbjct: 378 STLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSG-TLRDNLRLAN 436

Query: 114 ------YMMRCFPGVPEQKLRAHLGSFGVTGNLALQPM-YTLSGGQKSRVAFAKITFKKP 166
                  +      V    L   L S     N  L      LSGG++ R+A A+      
Sbjct: 437 PDASDEELWAALQQV---GLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDA 493

Query: 167 HIILLDEPSNHLDLDAVEALIQGL--VLFQGGILMVSHDEHLISGSVEELWVVSEGKATP 224
            + LLDEP+  LD      ++  L        +LMV+H    +   ++ + V+  GK   
Sbjct: 494 PLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLE-RMDRIIVLDNGK-II 551

Query: 225 FHGTFH-------DYKKMLQ 237
             GT          YK++ Q
Sbjct: 552 EEGTHAELLANNGRYKRLYQ 571

Length = 573

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 80.0 bits (198), Expect = 3e-18
 Identities = 59/213 (27%), Positives = 94/213 (44%), Gaps = 46/213 (21%)

Query: 28  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           +I F + S  YPGG    ++++F I     + + GP+G GKST+LKLI GE +P+ G + 
Sbjct: 1   MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI- 59

Query: 88  RSAKVRIAVFSQHHVDGLDLSSNPLL-------------------YMMRCFP----GVPE 124
                   + + H +  L     P L                   Y     P    G P 
Sbjct: 60  --------LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPP 111

Query: 125 QKLR----AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 180
           +++R      L   G+       P   LSGG++ RVA A+    +P ++L DEP+ +LD 
Sbjct: 112 REIRRRVSEVLDLVGLKHKARALPS-QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDP 170

Query: 181 DAVEALIQGLVLFQG------GILMVSHDEHLI 207
           D    +++   LF+        +LM +HD  L+
Sbjct: 171 DLSWEIMR---LFEEINRLGTTVLMATHDLELV 200

Length = 223

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 80.4 bits (199), Expect = 3e-18
 Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 31/180 (17%)

Query: 28  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           ++   + S  YP G    KN+N  I+    +A++GP+G GKST+L+ I   ++PSSG++ 
Sbjct: 1   MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60

Query: 88  --------------RSAKVRIAVFSQHH--VDGLDLSSNPLL----------YMMRCFPG 121
                         R  + RI +  QH+  ++ L +  N L            ++  F  
Sbjct: 61  LEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS- 119

Query: 122 VPEQKLRAH--LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
             E K RA   L   G+    A Q    LSGGQ+ RVA A+   ++P +IL DEP   LD
Sbjct: 120 -EEDKERALSALERVGLAD-KAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLD 177

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 79.9 bits (198), Expect = 4e-18
 Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 31/170 (18%)

Query: 38  YPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF---------- 87
           YP G    K+++  I+    +A++GP+G GKST+L+ + G ++P+SG+V           
Sbjct: 10  YPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLK 69

Query: 88  ----RSAKVRIAVFSQHH--VDGLD---------LSSNPLLY-MMRCFPGVPEQKLRAH- 130
               R  + +I +  Q    ++ L          L        +   FP   E+K RA  
Sbjct: 70  GKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFP--KEEKQRALA 127

Query: 131 -LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
            L   G+    A Q    LSGGQ+ RVA A+   ++P +IL DEP   LD
Sbjct: 128 ALERVGLLD-KAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLD 176

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 78.9 bits (195), Expect = 6e-18
 Identities = 53/205 (25%), Positives = 85/205 (41%), Gaps = 33/205 (16%)

Query: 45  FKNLNFGIDLD---SRIAMVGPNGIGKSTILKLIAGELQPSSGTV-------FRSAKV-- 92
             +    ID D       + G +G GKST+L+ IAG  +P  GT+       F S K   
Sbjct: 10  LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKIN 69

Query: 93  ------RIA-VFSQH----HVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA 141
                 +I  VF Q+    H   L++  N    + R         +   L   G+   L 
Sbjct: 70  LPPQQRKIGLVFQQYALFPH---LNVRENLAFGLKRKRNREDRISVDELLDLLGLDH-LL 125

Query: 142 LQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV-----LFQGG 196
            +    LSGG+K RVA A+    +P ++LLDEP + LD  A+   +   +          
Sbjct: 126 NRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALD-RALRLQLLPELKQIKKNLNIP 184

Query: 197 ILMVSHDEHLISGSVEELWVVSEGK 221
           ++ V+HD        + + V+ +G+
Sbjct: 185 VIFVTHDLSEAEYLADRIVVMEDGR 209

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 78.7 bits (195), Expect = 1e-17
 Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 27/179 (15%)

Query: 45  FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR----IAVFSQH 100
            K+++F +    RI ++G NG GKST+L+L+AG   P SGTV    +V     +      
Sbjct: 38  LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNP 97

Query: 101 HVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG---SFGVTGNLALQPMYTLSGGQKSRVA 157
            + G +   N  +Y+     G+  +++   +     F   G+    P+ T S G K+R+A
Sbjct: 98  ELTGRE---N--IYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLA 152

Query: 158 FAKITFKKPHIILLDEPSNHLDLDAV---------EALIQGLVLFQGGILMVSHDEHLI 207
           FA  T  +P I+L+DE      + AV         +  ++ L+     +++VSHD   I
Sbjct: 153 FAIATALEPDILLIDE------VLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSI 205

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 77.8 bits (192), Expect = 1e-17
 Identities = 53/177 (29%), Positives = 92/177 (51%), Gaps = 16/177 (9%)

Query: 40  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF----RSAKVRIA 95
           G  +LF+ L+F ++    + + GPNGIGK+T+L+++AG L+P SG V       A+ R  
Sbjct: 11  GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-D 69

Query: 96  VFSQH-----HVDGL--DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTL 148
              ++     H+ GL  +LS+   L+      G  ++ +   L + G+TG     P   L
Sbjct: 70  EPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTG-FEDLPAAQL 128

Query: 149 SGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE---ALIQGLVLFQGGILMVSH 202
           S GQ+ R+A A++   +  + +LDEP+  LD   V     L++  +   G +L+ +H
Sbjct: 129 SAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTH 185

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 81.0 bits (201), Expect = 1e-17
 Identities = 54/197 (27%), Positives = 77/197 (39%), Gaps = 54/197 (27%)

Query: 12  DYKFEF---PTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSR---------IA 59
               EF   P  D+     ++ + D +         F        L+           I 
Sbjct: 321 PEPIEFEERPPRDESERETLVEYPDLTKKLGD----FS-------LEVEGGEIYEGEVIG 369

Query: 60  MVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCF 119
           +VGPNGIGK+T  KL+AG L+P  G V    +++I+   Q              Y+   +
Sbjct: 370 IVGPNGIGKTTFAKLLAGVLKPDEGEV--DPELKISYKPQ--------------YIKPDY 413

Query: 120 PGVPEQKLRAHLGSFG-------VTGNLALQPMY-----TLSGGQKSRVAFAKITFKKPH 167
            G  E  LR+     G       +   L L+ +       LSGG+  RVA A    +   
Sbjct: 414 DGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDAD 473

Query: 168 IILLDEPSNHLDLDAVE 184
           + LLDEPS HLD   VE
Sbjct: 474 LYLLDEPSAHLD---VE 487

Length = 590

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 76.0 bits (188), Expect = 3e-17
 Identities = 50/183 (27%), Positives = 78/183 (42%), Gaps = 38/183 (20%)

Query: 29  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-SGTVF 87
           I   + S   P G +L K+L+F I    R+ + GP+G GKS++ + +AG L P  SG + 
Sbjct: 1   IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG-LWPWGSGRIG 59

Query: 88  RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMY- 146
                 +    Q           P  Y+                      G L  Q +Y 
Sbjct: 60  MPEGEDLLFLPQR----------P--YL--------------------PLGTLREQLIYP 87

Query: 147 ---TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHD 203
               LSGG++ R+AFA++   KP  + LDE ++ LD ++ + L Q L      ++ V H 
Sbjct: 88  WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHR 147

Query: 204 EHL 206
             L
Sbjct: 148 PSL 150

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score = 76.7 bits (189), Expect = 4e-17
 Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 28/203 (13%)

Query: 29  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 88
           I F + +  YP G      +N  I     + +VGP+G GKST+LKLI  E  P+SGT+  
Sbjct: 1   IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV 60

Query: 89  SAKV-------RIAVFSQHHVDGLDLSSNPLLY----------MMRCFPGVPEQKLR--- 128
           + +         I    +    G+      LL            +    GVP +++R   
Sbjct: 61  NGQDVSDLRGRAIPYLRRKI--GVVFQDFRLLPDRNVYENVAFALEVT-GVPPREIRKRV 117

Query: 129 -AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD---AVE 184
            A L   G++      P   LSGG++ RVA A+     P I++ DEP+ +LD D    + 
Sbjct: 118 PAALELVGLSHKHRALPA-ELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIM 176

Query: 185 ALIQGLVLFQGGILMVSHDEHLI 207
            L++ +      +++ +H + L+
Sbjct: 177 NLLKKINKAGTTVVVATHAKELV 199

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score = 76.0 bits (188), Expect = 8e-17
 Identities = 47/181 (25%), Positives = 83/181 (45%), Gaps = 31/181 (17%)

Query: 46  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF----------RSAKVRIA 95
            +L+  +       ++G NG GK+T LK++ GEL+P+SGT +          ++A+  + 
Sbjct: 19  DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLG 78

Query: 96  VFSQHHVDGLD--LSSNPLLYMMRCFPGVPEQKLRA----HLGSFGVTGNLALQPMYTLS 149
              Q   D L   L+    L       G+P+ +++      L   G+T   A +   TLS
Sbjct: 79  YCPQF--DALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTD-KANKRARTLS 135

Query: 150 GGQKSRVAFAKITFKKPHIILLDEPSNHLD-------LDAVEALIQGLVLFQGGILMVSH 202
           GG K +++ A      P ++LLDEP++ LD        D +  + +G       I++ +H
Sbjct: 136 GGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGR-----SIILTTH 190

Query: 203 D 203
            
Sbjct: 191 S 191

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 77.7 bits (192), Expect = 8e-17
 Identities = 51/211 (24%), Positives = 88/211 (41%), Gaps = 48/211 (22%)

Query: 25  GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 84
             P +   + S  +     +  +++  I     + ++GP+G GK+T+L++IAG  QPSSG
Sbjct: 2   PKPALEIRNVSKSFGDFTAV-DDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60

Query: 85  TVFRSAKVRIAVFSQHHVDGLDLSSNPL---------------------------LYMMR 117
            +               +DG D++  P                            L + +
Sbjct: 61  EIL--------------LDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRK 106

Query: 118 CFPG-VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 176
                  + ++   L   G+ G    +P   LSGGQ+ RVA A+    +P ++LLDEP +
Sbjct: 107 KLKKAEIKARVEEALELVGLEGFADRKPH-QLSGGQQQRVALARALVPEPKVLLLDEPLS 165

Query: 177 HLDLDAVEALIQGLV--LFQGGI--LMVSHD 203
            LD    E + + L     + GI  + V+HD
Sbjct: 166 ALDAKLREQMRKELKELQRELGITFVYVTHD 196

Length = 352

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 77.4 bits (191), Expect = 1e-16
 Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 20/177 (11%)

Query: 46  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV-------FRSAKVRI---- 94
           ++++F I     +  +G NG GKST LK++ G L P+SG V       FR  +  +    
Sbjct: 41  QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIG 100

Query: 95  AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF----GVTGNLALQPMYTLSG 150
            V  Q      DL +   L +++    +P+ +    L        + G L   P+  LS 
Sbjct: 101 LVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLK-WPVRKLSL 159

Query: 151 GQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL----VLFQGGILMVSHD 203
           GQ+ R   A      P ++ LDEP+  LD++A   + + L       Q  +L+ +H 
Sbjct: 160 GQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHI 216

Length = 325

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 75.8 bits (187), Expect = 1e-16
 Identities = 55/194 (28%), Positives = 83/194 (42%), Gaps = 18/194 (9%)

Query: 46  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV----FRSAKVRI------- 94
           K ++F I+    +  +GPNG GK+T LK+++G LQP+SG V        K R        
Sbjct: 38  KGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIG 97

Query: 95  AVFSQHHVDGLDLSSNPLLYMMRCFPGVPE---QKLRAHLGSFGVTGNLALQPMYTLSGG 151
            VF Q      DL      Y++     +P    +K    L        L   P+  LS G
Sbjct: 98  VVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLG 157

Query: 152 QKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLI 207
           Q+ R   A     +P I+ LDEP+  LD+ A E +   L  +       +L+ SH    I
Sbjct: 158 QRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDI 217

Query: 208 SGSVEELWVVSEGK 221
                 + V+ +G+
Sbjct: 218 EALARRVLVIDKGR 231

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 75.7 bits (187), Expect = 1e-16
 Identities = 49/206 (23%), Positives = 77/206 (37%), Gaps = 74/206 (35%)

Query: 29  ISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86
           + F + +F YPG   P+L ++++  I     +A+VGP+G GKST++ LI       SG +
Sbjct: 1   VEFKNVTFRYPGDGPPVL-RDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59

Query: 87  FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG-----SFGVTGNLA 141
                          +DG D+                   LR  +G      F     +A
Sbjct: 60  L--------------IDGHDVR------------DYTLASLRRQIGLVSQDVFLFNDTVA 93

Query: 142 LQPMY---------------------------------------TLSGGQKSRVAFAKIT 162
               Y                                        LSGGQ+ R+A A+  
Sbjct: 94  ENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARAL 153

Query: 163 FKKPHIILLDEPSNHLDLDAVEALIQ 188
            K P I++LDE ++ LD ++ E L+Q
Sbjct: 154 LKDPPILILDEATSALDTES-ERLVQ 178

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 75.0 bits (185), Expect = 2e-16
 Identities = 58/207 (28%), Positives = 92/207 (44%), Gaps = 34/207 (16%)

Query: 28  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           +I F + S  YPGG     +++  I     + + GP+G GK+T+LKL+ G L PS G   
Sbjct: 1   MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRG--- 57

Query: 88  RSAKVRIAVFSQHHVDGLDLSS-----------NPLLYMMRCFP---------GVPEQKL 127
              +VRIA    + + G  L               LL     +          G  E+++
Sbjct: 58  ---QVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREI 114

Query: 128 R----AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV 183
           +    A L   G+       P   LSGG++ RVA A+     P ++L DEP+ +LD D  
Sbjct: 115 QRRVGAALRQVGLEHKADAFPE-QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLS 173

Query: 184 E---ALIQGLVLFQGGILMVSHDEHLI 207
           E    L++ L      +++ +HD  L+
Sbjct: 174 ERILDLLKRLNKRGTTVIVATHDLSLV 200

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 75.7 bits (186), Expect = 2e-16
 Identities = 64/244 (26%), Positives = 109/244 (44%), Gaps = 43/244 (17%)

Query: 28  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           I+   + ++ Y  G    K +N  I      A++G NG GKST+ + + G L+PSSG + 
Sbjct: 5   ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIL 64

Query: 88  RSAK-----------VRIAV-----------FSQHHVDGLDLSSNPLLYMMRCFPGVPEQ 125
              K           +R +V           FS       D+S   +         +PE 
Sbjct: 65  FDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQ--DVSFGAVNL------KLPED 116

Query: 126 KLRAH----LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD 181
           ++R      L   G+  +L  +P + LS GQK RVA A +   +P +++LDEP+  LD  
Sbjct: 117 EVRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPM 175

Query: 182 AVEALIQGLVLFQGG----ILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY---KK 234
            V  +++ LV  Q      I++ +HD  ++    + ++V+ EG+     G   +    K+
Sbjct: 176 GVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVI-LQGNPKEVFAEKE 234

Query: 235 MLQS 238
           ML+ 
Sbjct: 235 MLRK 238

Length = 283

>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional

 Score = 73.7 bits (182), Expect = 4e-16
 Identities = 52/195 (26%), Positives = 90/195 (46%), Gaps = 24/195 (12%)

Query: 40  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF----RSAKVRIA 95
              ILF  L+F ++    + + GPNG GK+++L+++AG  +P +G V        + R  
Sbjct: 12  DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDE 71

Query: 96  VFSQ----HHVDGL--DLSS--NPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYT 147
                    H  G+  +L++  N L +  R      ++ L   L   G+ G   + P+  
Sbjct: 72  YHQDLLYLGHQPGIKTELTALEN-LRFYQRLHGPGDDEALWEALAQVGLAGFEDV-PVRQ 129

Query: 148 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF-----QGGILMVS- 201
           LS GQ+ RVA A++   +  + +LDEP   +D   V  L     L      QGG+++++ 
Sbjct: 130 LSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEA---LLAQHAEQGGMVILTT 186

Query: 202 -HDEHLISGSVEELW 215
             D  + S  V +L 
Sbjct: 187 HQDLPVASDKVRKLR 201

Length = 204

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 74.0 bits (183), Expect = 6e-16
 Identities = 53/205 (25%), Positives = 92/205 (44%), Gaps = 30/205 (14%)

Query: 46  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV-FRSAKV------RIA--- 95
            +++F +       ++GPNG GK+T+  LI+G L+P+SG+V F    +       IA   
Sbjct: 17  DDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLG 76

Query: 96  ---------VFSQHHVD-----GLDLSSNPLLYMMRCFPGVPEQKLRAH--LGSFGVTGN 139
                    +F +  V           +   L + R      E + RA   L   G+   
Sbjct: 77  IGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD- 135

Query: 140 LALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS---NHLDLDAVEALIQGLVLFQGG 196
           LA +P   LS GQ+ R+  A+     P ++LLDEP+   N  + + +  LI+ L      
Sbjct: 136 LADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGIT 195

Query: 197 ILMVSHDEHLISGSVEELWVVSEGK 221
           +L+V HD  ++    + + V+ +G+
Sbjct: 196 VLLVEHDMDVVMSLADRVTVLDQGR 220

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score = 75.8 bits (187), Expect = 8e-16
 Identities = 51/203 (25%), Positives = 82/203 (40%), Gaps = 40/203 (19%)

Query: 29  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-SGTVF 87
           I+  + S   P G  L   LNF +    R+ + G +G GK+++L+ +AG L P  SG + 
Sbjct: 393 ITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAG-LWPWGSGRIS 451

Query: 88  RSAKVRIAVFSQHHVDGLDLSSNPLLYMMR-------CFPG----VPEQKLRAHL----- 131
             A   +    Q           P  Y+ +       C+P       + +L A L     
Sbjct: 452 MPADSALLFLPQR----------P--YLPQGTLREALCYPNAAPDFSDAELVAVLHKVGL 499

Query: 132 ----GSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALI 187
                               LSGG++ R+AFA++   KP  + LDE ++ LD +  + L 
Sbjct: 500 GDLAERLDEEDRWDR----VLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLY 555

Query: 188 QGL--VLFQGGILMVSHDEHLIS 208
           Q L   L    ++ V H   L +
Sbjct: 556 QLLKEELPDATVISVGHRPTLWN 578

Length = 604

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 73.0 bits (179), Expect = 1e-15
 Identities = 60/203 (29%), Positives = 98/203 (48%), Gaps = 30/203 (14%)

Query: 44  LFKNLNFGIDLD----SRIAMVGPNGIGKSTILKLIAGELQPSSGT-------VFRSAKV 92
            +++L    DL+      +A++GP+G GKST+L LIAG ++P+SG+           A  
Sbjct: 9   EYEHLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPY 68

Query: 93  RIAV---FSQHHV-------DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL 142
           +  V   F ++++         + L  +P L +        ++K+       G+   L  
Sbjct: 69  QRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLN----AEQQEKVVDAAQQVGIADYLDR 124

Query: 143 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD-LDAVE--ALIQGLVLFQG-GIL 198
            P   LSGGQ+ RVA A+   +   I+LLDEP + LD L   E  AL++ L   +   +L
Sbjct: 125 LPE-QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLL 183

Query: 199 MVSHDEHLISGSVEELWVVSEGK 221
           MV+H          ++ VVS+GK
Sbjct: 184 MVTHHLSDARAIASQIAVVSQGK 206

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 74.3 bits (183), Expect = 1e-15
 Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 23/181 (12%)

Query: 45  FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF------------RSAKV 92
             +++  I     +A++GP+G GKST+L++IAG   P +G +                  
Sbjct: 18  LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDR 77

Query: 93  RIAVFSQHH--VDGLDLSSNPL--LYMMRCFPGVPEQKLRAH--LGSFGVTGNLALQPMY 146
           ++    QH+     + ++ N    L + +  P   E + R    L    + G LA +   
Sbjct: 78  KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEG-LADRYPA 136

Query: 147 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSH 202
            LSGGQ+ RVA A+    +P ++LLDEP   LD    + L + L           + V+H
Sbjct: 137 QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTH 196

Query: 203 D 203
           D
Sbjct: 197 D 197

Length = 345

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 74.2 bits (183), Expect = 2e-15
 Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 37/175 (21%)

Query: 29  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF- 87
           +   +    +    +L K++N  I+    + ++GP+G GKST+L++IAG  +P+SG +  
Sbjct: 4   LELKNVRKSFGSFEVL-KDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILI 62

Query: 88  --------RSAKVRIA-VFSQHHVDGLDLSSNPLLYMM-----RCFP----GVPEQKLRA 129
                      K  IA VF  +           L   M       F     GVP+ ++  
Sbjct: 63  DGRDVTDLPPEKRGIAMVFQNY----------ALYPHMTVYENIAFGLKLRGVPKAEIDK 112

Query: 130 HLGSFGVTGNLALQPM-----YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
            +    V   L L+ +       LSGGQ+ RVA A+   +KP + LLDEP ++LD
Sbjct: 113 RVKE--VAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLD 165

Length = 338

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score = 74.3 bits (183), Expect = 2e-15
 Identities = 62/208 (29%), Positives = 93/208 (44%), Gaps = 38/208 (18%)

Query: 6   EVVNDPDYKFEFPTPDDRPGPPIISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPN 64
           EV + PD     P    R G   ++F + SF Y P  PIL   ++F I L   +A+VG +
Sbjct: 245 EVSDAPDAP---PLWPVRLG--AVAFINVSFAYDPRRPIL-NGISFTIPLGKTVAIVGES 298

Query: 65  GIGKSTILKLIAGELQPSSGTVF-----------RSAKVRIAVFSQHHVDGLDLSSNPLL 113
           G GKSTIL+L+      +SG++            +S +  I +  Q  V    L ++ + 
Sbjct: 299 GAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTV----LFNDTIA 354

Query: 114 YMMRCFPGVP----EQKLR----AHLGSFGVTGNLALQPM-----YTLSGGQKSRVAFAK 160
           Y ++   G P    E+       A +  F  +               LSGG+K RVA A+
Sbjct: 355 YNIKY--GRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIAR 412

Query: 161 ITFKKPHIILLDEPSNHLDLDAVEALIQ 188
              K P I++LDE ++ LD    E  IQ
Sbjct: 413 TILKNPPILILDEATSALDTHT-EQAIQ 439

Length = 497

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 72.5 bits (179), Expect = 2e-15
 Identities = 46/162 (28%), Positives = 68/162 (41%), Gaps = 40/162 (24%)

Query: 51  GIDLDSR----IAMVGPNGIGKSTILKLIAGELQPSSGTVF------------RSAKVRI 94
            + L  R    +A++GPNG GKST+L+ ++GEL P SG V               A+ R 
Sbjct: 20  DVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR- 78

Query: 95  AVFSQHH----------VDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQP 144
           AV  QH           V  +  + + L         +    L        +   LA + 
Sbjct: 79  AVLPQHSSLSFPFTVEEVVAMGRAPHGLSR--AEDDALVAAALAQ----VDLAH-LAGRD 131

Query: 145 MYTLSGGQKSRVAFAKI------TFKKPHIILLDEPSNHLDL 180
              LSGG++ RV  A++          P  +LLDEP++ LDL
Sbjct: 132 YPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173

Length = 258

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 73.4 bits (181), Expect = 4e-15
 Identities = 29/90 (32%), Positives = 51/90 (56%)

Query: 143 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSH 202
             +  LSGG++ RVA  ++   KP ++LLDEP+NHLD ++V  L Q L  + G ++ V+H
Sbjct: 157 ADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTH 216

Query: 203 DEHLISGSVEELWVVSEGKATPFHGTFHDY 232
           D + +      +  +  G+  P+ G +  +
Sbjct: 217 DRYFLDNVAGWILELDRGRGIPWEGNYSSW 246

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 71.6 bits (176), Expect = 4e-15
 Identities = 58/185 (31%), Positives = 86/185 (46%), Gaps = 27/185 (14%)

Query: 43  ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV------------FRSA 90
           +LF ++N  I+    + + GP+G GK+T+L LI G      G++                
Sbjct: 20  VLF-DINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELV 78

Query: 91  KVR--IAVFSQHH--VDGLDLSSN---PLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ 143
           ++R  I    Q H  +  L    N    L            ++ RA L + G+  +L   
Sbjct: 79  QLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYY 138

Query: 144 PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD----LDAVEALIQGLVLFQG-GIL 198
           P + LSGGQK RVA A+    +P ++L DEP+  LD     D VE L+Q L   QG  IL
Sbjct: 139 P-HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVE-LMQKLAREQGCTIL 196

Query: 199 MVSHD 203
           +V+HD
Sbjct: 197 IVTHD 201

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C

 Score = 72.2 bits (177), Expect = 5e-15
 Identities = 65/216 (30%), Positives = 107/216 (49%), Gaps = 20/216 (9%)

Query: 25  GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 84
               + FS+      G P+L KN+N  I+    +A+ G  G GK+++L LI GEL+PS G
Sbjct: 36  DDNNLFFSN--LCLVGAPVL-KNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEG 92

Query: 85  TVFRSAKVRIAVFSQHH--VDGLDLSSNPLLYM----MRCFPGVPEQKLRAHLGSFGVTG 138
            +  S   RI+  SQ    + G  +  N +  +     R    V   +L   +  F    
Sbjct: 93  KIKHSG--RISFSSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKD 149

Query: 139 NLAL-QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGLVLF 193
           N  L +   TLSGGQ++R++ A+  +K   + LLD P  +LD+    +  E+ +  L+  
Sbjct: 150 NTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMAN 209

Query: 194 QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTF 229
           +  IL+ S  EHL     +++ ++ EG +  F+GTF
Sbjct: 210 KTRILVTSKMEHL--KKADKILILHEGSSY-FYGTF 242

The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 71.3 bits (175), Expect = 5e-15
 Identities = 55/188 (29%), Positives = 83/188 (44%), Gaps = 25/188 (13%)

Query: 42  PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV--------------- 86
            IL K +   +     +A+VGP+G GKST+L ++AG   PSSG V               
Sbjct: 24  SIL-KGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDAR 82

Query: 87  --FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH--LGSFGVTGNLAL 142
              R+  V     S H +  L    N  L +        + +  A   L + G+   L  
Sbjct: 83  AALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTH 142

Query: 143 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL---DAVEALIQGLVLFQGGIL- 198
            P   LSGG++ RVA A+    +P ++  DEP+ +LD    D +  L+  L   +G  L 
Sbjct: 143 YP-AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLV 201

Query: 199 MVSHDEHL 206
           +V+HD  L
Sbjct: 202 LVTHDPQL 209

Length = 228

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 70.6 bits (173), Expect = 6e-15
 Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 16/185 (8%)

Query: 40  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV--------FRSAK 91
            G  LF  L+F +     + + GPNG GK+T+L+++AG   P +G V        F+   
Sbjct: 11  DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDS 70

Query: 92  VRIAVFSQHHVDGLD--LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLS 149
           +   +    H  G+   LS    L          EQ   A L   G+ G    +P+  LS
Sbjct: 71  IARGLLYLGHAPGIKTTLSVLENLRFWHADHSD-EQVEEA-LARVGLNG-FEDRPVAQLS 127

Query: 150 GGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV--LFQGG-ILMVSHDEHL 206
            GQ+ RVA A++      + +LDEP+  LD   V    + +     +GG +++ +H +  
Sbjct: 128 AGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLG 187

Query: 207 ISGSV 211
           +S + 
Sbjct: 188 LSEAG 192

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 72.6 bits (178), Expect = 6e-15
 Identities = 52/167 (31%), Positives = 76/167 (45%), Gaps = 20/167 (11%)

Query: 29  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV-- 86
           I  +  S  Y G   +   L+F +       ++GPNG GKSTI ++I G   P +G +  
Sbjct: 42  IDLAGVSKSY-GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITV 100

Query: 87  --------FRSAKVRIAVFSQHHVDGLDLS---SNPLLYMMRCFPGVPEQKLRAHLGS-- 133
                    R A+ RI V  Q   D LDL       LL   R F G+  +++ A + S  
Sbjct: 101 LGVPVPARARLARARIGVVPQ--FDNLDLEFTVRENLLVFGRYF-GMSTREIEAVIPSLL 157

Query: 134 -FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
            F    + A   +  LSGG K R+  A+     P +++LDEP+  LD
Sbjct: 158 EFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLD 204

Length = 340

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 71.4 bits (176), Expect = 6e-15
 Identities = 59/220 (26%), Positives = 94/220 (42%), Gaps = 45/220 (20%)

Query: 40  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV-FRSAKV------ 92
           GG     +++  +     + ++GPNG GK+T+  LI G  +PSSGTV FR   +      
Sbjct: 15  GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPH 74

Query: 93  RIA------------VFS-----------QHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA 129
           RIA            +F             H   GL                  E++ R 
Sbjct: 75  RIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKE------EREARE 128

Query: 130 H----LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS---NHLDLDA 182
                L   G+   LA +P   LS GQ+ R+  A+    +P ++LLDEP+   N  + + 
Sbjct: 129 RARELLEFVGLG-ELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEE 187

Query: 183 VEALIQGLVLFQG-GILMVSHDEHLISGSVEELWVVSEGK 221
           +  LI+ L    G  IL++ HD  L+ G  + + V++ G+
Sbjct: 188 LAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGE 227

Length = 250

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 70.8 bits (174), Expect = 7e-15
 Identities = 57/204 (27%), Positives = 90/204 (44%), Gaps = 30/204 (14%)

Query: 43  ILFKNLNFGIDLD----SRIAMVGPNGIGKSTILKLIAGELQPSSGTVF-------RSAK 91
             + +L    DL       +A++GP+G GKST+L LIAG   P+SG +         S  
Sbjct: 9   FSYGHLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP 68

Query: 92  VRIAV---FSQH----HVD---GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA 141
               V   F ++    H+     + L  +P L +         +K+ A     G+ G L 
Sbjct: 69  AERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKL----NAEQREKVEAAAAQVGLAGFLK 124

Query: 142 LQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE---ALIQGLVLFQG-GI 197
             P   LSGGQ+ RVA A+   ++  I+LLDEP + LD        AL+  L   +   +
Sbjct: 125 RLPG-ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTL 183

Query: 198 LMVSHDEHLISGSVEELWVVSEGK 221
           LMV+H     +   + +  +  G+
Sbjct: 184 LMVTHHPEDAARIADRVVFLDNGR 207

Length = 231

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 72.5 bits (179), Expect = 8e-15
 Identities = 51/211 (24%), Positives = 80/211 (37%), Gaps = 45/211 (21%)

Query: 25  GPPIISFSDASFGYPGGPILFKNLNFGIDLDSR----IAMVGPNGIGKSTILKLIAGELQ 80
            PP++     S  + G   L      G+ L  R     A++G NG GKST++K+++G   
Sbjct: 5   TPPLLELRGISKSFGGVKALD-----GVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP 59

Query: 81  PSSGTV-FRSAKVR-----------IAVFSQHHVDGLDLSSNPLL----------YMMRC 118
           P SG +      V            IA   Q      +LS  P L             R 
Sbjct: 60  PDSGEILIDGKPVAFSSPRDALAAGIATVHQ------ELSLVPNLSVAENIFLGREPTRR 113

Query: 119 FPGVPEQKLR----AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP 174
           F  +  + +R      L   G+  +     +  LS  Q+  V  A+       +++LDEP
Sbjct: 114 FGLIDRKAMRRRARELLARLGLDIDPD-TLVGDLSIAQRQMVEIARALSFDARVLILDEP 172

Query: 175 SNHLDLDAVEALIQGLVLF--QG-GILMVSH 202
           +  L +   E L   +     QG  I+ +SH
Sbjct: 173 TAALTVKETERLFDLIRRLKAQGVAIIYISH 203

Length = 500

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 70.6 bits (173), Expect = 8e-15
 Identities = 57/199 (28%), Positives = 90/199 (45%), Gaps = 36/199 (18%)

Query: 19  TPDDRPGPPIISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA 76
            PD   G  I+ F + +F YP  P  ++ ++++F +      A+VGP+G GKST++ L+ 
Sbjct: 4   APDHLKG--IVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLE 61

Query: 77  GELQPSSGTVFRSAKV-----------RIAVFSQHHV-DGLDLSSNPLLYMMRC-FPGVP 123
              QP  G V    K            ++++  Q  V     L  N    +  C F  V 
Sbjct: 62  NFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVK 121

Query: 124 EQKLRAHLGSF------------GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL 171
           E   +AH  SF            G  G+        LSGGQK RVA A+   + P +++L
Sbjct: 122 EAAQKAHAHSFISELASGYDTEVGEKGSQ-------LSGGQKQRVAIARALIRNPQVLIL 174

Query: 172 DEPSNHLDLDAVEALIQGL 190
           DE ++ LD ++ + + Q L
Sbjct: 175 DEATSALDAESEQQVQQAL 193

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score = 72.1 bits (177), Expect = 1e-14
 Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 47/226 (20%)

Query: 29  ISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86
           I F D SF YP  P   + K L F +     +A+VGP+G GKST+  L+    QP+ G V
Sbjct: 479 IEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV 538

Query: 87  FRSAKVRIAVFSQH--HVDGLDLSSNPLLY-----------MMRCFPGVPEQKLR----- 128
                V +  +  H  H     +   P+L+           +       P++++      
Sbjct: 539 LLDG-VPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDT----PDEEIMAAAKA 593

Query: 129 AHLGSF------------GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 176
           A+   F            G  G+        LSGGQK R+A A+   +KP +++LDE ++
Sbjct: 594 ANAHDFIMEFPNGYDTEVGEKGSQ-------LSGGQKQRIAIARALVRKPRVLILDEATS 646

Query: 177 HLDLDAVEALIQGLVLFQG-GILMVSHDEHLISGSVEELWVVSEGK 221
            LD    E L+Q         +L+++H    +  + +++ V+ +G 
Sbjct: 647 ALDA-ECEQLLQESRSRASRTVLLIAHRLSTVERA-DQILVLKKGS 690

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 70.1 bits (172), Expect = 3e-14
 Identities = 64/217 (29%), Positives = 97/217 (44%), Gaps = 28/217 (12%)

Query: 28  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           II   D  F Y  G    K L+  I   S+ A++GPNG GKST+L  + G   P  G V 
Sbjct: 4   IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63

Query: 88  RSAKVRIA--------------------VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKL 127
              +   A                    VFS    D  D++  P+   M       E+++
Sbjct: 64  VMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWD--DVAFGPV--NMGLDKDEVERRV 119

Query: 128 RAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALI 187
              L +  +  +   +P Y LS GQK RVA A +    P +I+LDEP  +LD    E L+
Sbjct: 120 EEALKAVRMW-DFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLM 178

Query: 188 QGL-VLFQGG--ILMVSHDEHLISGSVEELWVVSEGK 221
           + L  L   G  +++ +HD  L +   +++ V+ EG+
Sbjct: 179 EILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGR 215

Length = 274

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 71.1 bits (175), Expect = 3e-14
 Identities = 66/278 (23%), Positives = 108/278 (38%), Gaps = 73/278 (26%)

Query: 18  PTPDDRPGPPIISFSDASFGYPGGPILF-------KNLNFGIDLDSR----IAMVGPNGI 66
           P        P++S  + S  Y     LF       K ++  +  D R    + +VG +G 
Sbjct: 270 PRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVD-DVSFDLREGETLGLVGESGS 328

Query: 67  GKSTILKLIAGELQPSSGTVFRS---------------AKVRIAVFSQHHVDGL------ 105
           GKST+ +++AG L PSSG++                   ++++ VF Q     L      
Sbjct: 329 GKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQM-VF-QDPYSSLNPRMTV 386

Query: 106 -DLSSNPLLYMMRCFPGVPEQKLRAHLGSF----GVTGNLALQPMYTLSGGQKSRVAFAK 160
            D+ + PL    R   G    + RA +       G+      +  + LSGGQ+ RVA A+
Sbjct: 387 GDILAEPL----RIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIAR 442

Query: 161 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---------FQGGILMVSHDEHLISGSV 211
               +P +++LDEP + LD       +Q  VL              L +SHD  +    V
Sbjct: 443 ALALEPKLLILDEPVSALD-----VSVQAQVLNLLKDLQEELGLTYLFISHDLAV----V 493

Query: 212 EEL----WVVSEGK-------ATPFHGTFHDYKKMLQS 238
             +     V+ +G+          F    H Y + L +
Sbjct: 494 RYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLLA 531

Length = 539

>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional

 Score = 69.6 bits (170), Expect = 3e-14
 Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 23/166 (13%)

Query: 35  SFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV-------- 86
           + GY G   + +NL   I      A++GPNG GKST+L+ ++  + P+ G V        
Sbjct: 14  TLGY-GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQ 72

Query: 87  -FRSAKV--RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP---------EQKLRAHLGSF 134
            + S +V  RI + +Q+     D++   L+   R +P  P         E+ +   + + 
Sbjct: 73  HYASKEVARRIGLLAQNATTPGDITVQELVARGR-YPHQPLFTRWRKEDEEAVTKAMQAT 131

Query: 135 GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 180
           G+T +LA Q + TLSGGQ+ R   A +  ++  I+LLDEP+  LD+
Sbjct: 132 GIT-HLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDI 176

Length = 265

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 70.6 bits (173), Expect = 3e-14
 Identities = 58/232 (25%), Positives = 97/232 (41%), Gaps = 50/232 (21%)

Query: 27  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86
           P+I  SD S  +    +L   ++  +   S + +VGPNG GK+T+L+ I G L P++GTV
Sbjct: 2   PMIDVSDLSVEFGDTTVL-DGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTV 60

Query: 87  FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQ-------KLRA--------HL 131
                          V G D+ +       R    VP+         +R         H 
Sbjct: 61  --------------LVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHR 106

Query: 132 GSFGVTGN-----------------LALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP 174
             F                       A +P+ +LSGG++ RV  A+   +   ++LLDEP
Sbjct: 107 SRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEP 166

Query: 175 SNHLDLD-AVE--ALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKAT 223
           +  LD++  V    L++ LV      +   HD  L +   +EL ++++G+  
Sbjct: 167 TASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVR 218

Length = 402

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 69.6 bits (171), Expect = 3e-14
 Identities = 53/185 (28%), Positives = 79/185 (42%), Gaps = 48/185 (25%)

Query: 27  PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 85
            +I   + SF YP       KN++F I+    +A++G NG GKSTI K++ G L+P SG 
Sbjct: 6   VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGE 65

Query: 86  VFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPG------------------------ 121
           +               +DG+ +S   L   +R   G                        
Sbjct: 66  IK--------------IDGITISKENLKE-IRKKIGIIFQNPDNQFIGATVEDDIAFGLE 110

Query: 122 ---VPEQKLRAHLGSF----GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP 174
              VP +K++  +       G+   L  +P   LSGGQK RVA A +    P II+ DE 
Sbjct: 111 NKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQN-LSGGQKQRVAIASVLALNPEIIIFDES 169

Query: 175 SNHLD 179
           ++ LD
Sbjct: 170 TSMLD 174

Length = 271

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 67.5 bits (166), Expect = 3e-14
 Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 40/168 (23%)

Query: 38  YPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVF 97
           + G   L   ++  +      A++G NG GKST++K+++G  +P SG +           
Sbjct: 10  FGGVKAL-DGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL---------- 58

Query: 98  SQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVA 157
               VDG ++S              P    RA     G+        +Y LS G++  V 
Sbjct: 59  ----VDGKEVS-----------FASPRDARRA-----GI------AMVYQLSVGERQMVE 92

Query: 158 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QG-GILMVSH 202
            A+   +   +++LDEP+  L    VE L + +     QG  ++ +SH
Sbjct: 93  IARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISH 140

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 69.0 bits (169), Expect = 3e-14
 Identities = 52/195 (26%), Positives = 89/195 (45%), Gaps = 29/195 (14%)

Query: 46  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL 105
            N++  +  +S   ++GPNG GKST+LK+I G L+P+SG +         +F  H     
Sbjct: 17  NNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEI---------IFDGHPWTRK 67

Query: 106 DLSS------NPLLY---------MMRC-FPGVPEQKLRAHLGSFGVTGNLALQPMYTLS 149
           DL        +P LY          +     G+P+ ++   L    +T N   +     S
Sbjct: 68  DLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLT-NTGKKKAKQFS 126

Query: 150 GGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QG-GILMVSHDEHL 206
            G K R+  A      P +++LDEP+N LD   ++ L + +  F  QG  +++ SH    
Sbjct: 127 LGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSE 186

Query: 207 ISGSVEELWVVSEGK 221
           +    + + ++SEG 
Sbjct: 187 VQQLADHIGIISEGV 201

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 70.5 bits (174), Expect = 4e-14
 Identities = 26/57 (45%), Positives = 40/57 (70%)

Query: 147 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHD 203
            LSGG++ RVA  ++  +KP ++LLDEP+NHLD ++V  L Q L  + G ++ V+HD
Sbjct: 163 KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHD 219

Length = 556

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 69.0 bits (169), Expect = 5e-14
 Identities = 54/203 (26%), Positives = 80/203 (39%), Gaps = 68/203 (33%)

Query: 27  PIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 85
            II F + SF Y        K+++F I      ++VG NG GKSTI KL+ G  +  SG 
Sbjct: 6   SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGE 65

Query: 86  VFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG------------- 132
           +F         ++   +   +                  +KLR H+G             
Sbjct: 66  IF---------YNNQAITDDNF-----------------EKLRKHIGIVFQNPDNQFVGS 99

Query: 133 ------SFGVTGNL------------ALQP--MY--------TLSGGQKSRVAFAKITFK 164
                 +FG+  +             AL+   M          LSGGQK RVA A +   
Sbjct: 100 IVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLAL 159

Query: 165 KPHIILLDEPSNHLDLDAVEALI 187
            P +I+LDE ++ LD DA + L+
Sbjct: 160 NPSVIILDEATSMLDPDARQNLL 182

Length = 269

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 69.6 bits (170), Expect = 5e-14
 Identities = 53/182 (29%), Positives = 84/182 (46%), Gaps = 22/182 (12%)

Query: 40  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV----------FRS 89
           G  ++  +L+F I       ++GPNG GKSTI +++ G + P  G +           R 
Sbjct: 15  GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARL 74

Query: 90  AKVRIAVFSQHHVDGLDLS---SNPLLYMMRCFPGVPEQKLRAHLGS---FGVTGNLALQ 143
           A+V I V  Q   D LD        LL   R F G+  +++ A + S   F    + A  
Sbjct: 75  ARVAIGVVPQ--FDNLDPEFTVRENLLVFGRYF-GMSTREIEAVIPSLLEFARLESKADV 131

Query: 144 PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL---IQGLVLFQGGILMV 200
            +  LSGG K R+  A+     P +++LDEP+  LD  A   +   ++ L+     IL+ 
Sbjct: 132 RVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLT 191

Query: 201 SH 202
           +H
Sbjct: 192 TH 193

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 69.1 bits (169), Expect = 6e-14
 Identities = 61/223 (27%), Positives = 103/223 (46%), Gaps = 35/223 (15%)

Query: 28  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           +I   D  + Y G      N+NF    +SRIA++GPNG GKST+ +   G L+P+SG+V 
Sbjct: 3   LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL 62

Query: 88  -----------RSAKVRIAVFSQHHVDGL-------DLSSNPLLYMMRCFPGVPEQKLRA 129
                      R  +  + +  Q+  D +       D++  P         G+ E+ + A
Sbjct: 63  IRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGP------INLGLDEETV-A 115

Query: 130 H-----LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE 184
           H     L   G+       P + LSGG+K RVA A +   +P +++LDEP+  LD   V+
Sbjct: 116 HRVSSALHMLGLEELRDRVPHH-LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVK 174

Query: 185 ALIQGL----VLFQGGILMVSHDEHLISGSVEELWVVSEGKAT 223
            LI  L      +   ++  +H   L+    + ++V+ +G+  
Sbjct: 175 ELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIV 217

Length = 277

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 68.0 bits (166), Expect = 7e-14
 Identities = 51/204 (25%), Positives = 87/204 (42%), Gaps = 26/204 (12%)

Query: 40  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV-FRSAKVRIAVFS 98
           G   +  N++  +     IA+ GP+G GKST+LK++A  + P+SGT+ F    V      
Sbjct: 14  GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPE 73

Query: 99  QHHVDGLDLSSNPLLYMMRCFPGVPEQKL----RAH------------LGSFGVTGNLAL 142
            +       +  P L     F    E  L    +              L  F +  ++  
Sbjct: 74  AYRQQVSYCAQTPAL-----FGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILT 128

Query: 143 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD---AVEALIQGLVLFQG-GIL 198
           + +  LSGG+K R+A  +     P I+LLDE ++ LD      +E +I   V  Q   +L
Sbjct: 129 KNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVL 188

Query: 199 MVSHDEHLISGSVEELWVVSEGKA 222
            ++HD+       +++  +  G A
Sbjct: 189 WITHDKDQAIRHADKVITLQPGHA 212

Length = 223

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 67.9 bits (166), Expect = 7e-14
 Identities = 52/168 (30%), Positives = 78/168 (46%), Gaps = 28/168 (16%)

Query: 57  RIAMVGPNGIGKSTILKLIAGELQPSSGTVF----------RSAKVRIAVFSQH----HV 102
             A+VGP+G GKST+L LIAG   P SG V            + +    +F ++    H+
Sbjct: 26  ITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHL 85

Query: 103 D---GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFA 159
                + L  +P L +         Q +   L   G+ G     P   LSGG++ RVA A
Sbjct: 86  TVEQNVGLGLSPGLKLT----AEDRQAIEVALARVGLAGLEKRLPG-ELSGGERQRVALA 140

Query: 160 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVL-----FQGGILMVSH 202
           ++  +   ++LLDEP   LD  A+ A +  LVL      +  +LMV+H
Sbjct: 141 RVLVRDKPVLLLDEPFAALD-PALRAEMLDLVLDLHAETKMTVLMVTH 187

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional

 Score = 68.0 bits (166), Expect = 7e-14
 Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 32/226 (14%)

Query: 28  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           +I F   S  Y GG    + + F +       + G +G GKST+LKLI G  +PS+G ++
Sbjct: 1   MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIW 60

Query: 88  ---------RSAKVRI------AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLR---- 128
                    ++ +V         +F  HH+  +D +    + +     G     +R    
Sbjct: 61  FSGHDITRLKNREVPFLRRQIGMIFQDHHLL-MDRTVYDNVAIPLIIAGASGDDIRRRVS 119

Query: 129 AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 188
           A L   G+       P+  LSGG++ RV  A+    KP ++L DEP+ +LD    +AL +
Sbjct: 120 AALDKVGLLDKAKNFPI-QLSGGEQQRVGIARAVVNKPAVLLADEPTGNLD----DALSE 174

Query: 189 GLV-LFQG------GILMVSHDEHLISGSVEELWVVSEGKATPFHG 227
           G++ LF+        +LM +HD  LIS     +  +S+G      G
Sbjct: 175 GILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHGGVG 220

Length = 222

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 70.1 bits (172), Expect = 7e-14
 Identities = 57/213 (26%), Positives = 85/213 (39%), Gaps = 67/213 (31%)

Query: 24  PGPPIISFSDASFGYPGGPIL--FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP 81
           P    I F   +F YP  P       LN  +     +A+VGP+G GKST+ +L+     P
Sbjct: 333 PLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDP 392

Query: 82  SSGTV---------FRSAKVR--IAVFSQHHVDGLDLSSNPLLYMMRCFP----GVPE-- 124
            SG +            A++R  +A+  Q          +P+L+          G P+  
Sbjct: 393 QSGRILLDGVDLRQLDPAELRARMALVPQ----------DPVLFAASVMENIRYGRPDAT 442

Query: 125 --------QKLRAH-------------LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF 163
                   +   AH             LG  GV          TLSGGQ+ R+A A+   
Sbjct: 443 DEEVEAAARAAHAHEFISALPEGYDTYLGERGV----------TLSGGQRQRIAIARAIL 492

Query: 164 KKPHIILLDEPSNHLDLD-------AVEALIQG 189
           K   I+LLDE ++ LD +       A+E L++G
Sbjct: 493 KDAPILLLDEATSALDAESEQLVQQALETLMKG 525

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 69.2 bits (170), Expect = 8e-14
 Identities = 55/224 (24%), Positives = 103/224 (45%), Gaps = 35/224 (15%)

Query: 28  IISFSDASFGYP----GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS 83
           +I   + S  +     G      +++  I       ++G +G GKST+L+LI    +P+S
Sbjct: 1   MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS 60

Query: 84  GTVF--------------RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP----GVPE- 124
           G+VF              R  + +I +  QH     +L S+  ++    FP    GVP+ 
Sbjct: 61  GSVFVDGQDLTALSEAELRQLRQKIGMIFQH----FNLLSSRTVFENVAFPLELAGVPKA 116

Query: 125 --QKLRAHLGSF-GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD 181
             ++  A L    G++      P   LSGGQK RVA A+     P I+L DE ++ LD +
Sbjct: 117 EIKQRVAELLELVGLSDKADRYPA-QLSGGQKQRVAIARALANNPKILLCDEATSALDPE 175

Query: 182 AVEALIQGLVLFQG----GILMVSHDEHLISGSVEELWVVSEGK 221
             +++++ L          I++++H+  ++    + + V+ +G+
Sbjct: 176 TTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGR 219

Length = 339

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 69.9 bits (172), Expect = 8e-14
 Identities = 59/227 (25%), Positives = 98/227 (43%), Gaps = 36/227 (15%)

Query: 4   VDEVVN-DPDYKFEFPTPDDRPGPPIISFSDASFGYPGGP-ILFKNLNFGIDLDSRIAMV 61
           ++E+    P+  F   T         ++ ++ SF YP  P  + K L+  I    ++A++
Sbjct: 314 INEITEQKPEVTFP-TTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALL 372

Query: 62  GPNGIGKSTILKLIAGELQPSSGTV---------FRSAKVR--IAVFSQH-HVDGLDLSS 109
           G  G GKST+L+L+     P  G +         +  A +R  I+V SQ  H+    L  
Sbjct: 373 GRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRD 432

Query: 110 NPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA--LQPMYT--------LSGGQKSRVAFA 159
           N LL      P   ++ L   L   G+   L    + +          LSGG++ R+  A
Sbjct: 433 NLLLAA----PNASDEALIEVLQQVGL-EKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIA 487

Query: 160 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGG----ILMVSH 202
           +       ++LLDEP+  LD +  E  I  L L +      +LM++H
Sbjct: 488 RALLHDAPLLLLDEPTEGLDAET-ERQILEL-LAEHAQNKTVLMITH 532

Length = 574

>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional

 Score = 67.6 bits (165), Expect = 8e-14
 Identities = 56/197 (28%), Positives = 90/197 (45%), Gaps = 17/197 (8%)

Query: 21  DDRP---GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG 77
              P    PP+++    +F     P+ F  L+F +D    + + G NG GK+T+L+++AG
Sbjct: 1   MIEPLHTAPPLLAAHALAFSRNEEPV-FGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAG 59

Query: 78  ELQPSSGTVFRSAK-VRIAVFSQH-----HVDGL--DLSSNPLLYMMRCFPGV-PEQKLR 128
            L   SG +    K       S+      H+ GL  DLS+   L+ +    G   +Q   
Sbjct: 60  LLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPG 119

Query: 129 AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEA 185
           + L   G+ G      +  LS GQK R+A A++      + LLDEP  +LDL+    V  
Sbjct: 120 SALAIVGLAGY-EDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNR 178

Query: 186 LIQGLVLFQGGILMVSH 202
           +I   +   G  L+ +H
Sbjct: 179 MISAHLRGGGAALVTTH 195

Length = 214

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 67.6 bits (166), Expect = 9e-14
 Identities = 51/237 (21%), Positives = 90/237 (37%), Gaps = 75/237 (31%)

Query: 29  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 88
           +   + +  Y     L   ++  +       ++GPNG GK+T+++++A    PSSGT+  
Sbjct: 1   LQLENLTKRYGKKRAL-DGVSLTLG-PGMYGLLGPNGAGKTTLMRILATLTPPSSGTI-- 56

Query: 89  SAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG----SFGVTGNL---- 140
                        +DG D+   P             QKLR  +G     FGV  N     
Sbjct: 57  ------------RIDGQDVLKQP-------------QKLRRRIGYLPQEFGVYPNFTVRE 91

Query: 141 --------------------------------ALQPMYTLSGGQKSRVAFAKITFKKPHI 168
                                           A + + +LSGG + RV  A+     P I
Sbjct: 92  FLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSI 151

Query: 169 ILLDEPSNHLDLD---AVEALIQGLVLFQGGILMVS-HDEHLISGSVEELWVVSEGK 221
           +++DEP+  LD +       L+  L   +  I+++S H    +     ++ V+++GK
Sbjct: 152 LIVDEPTAGLDPEERIRFRNLLSELG--EDRIVILSTHIVEDVESLCNQVAVLNKGK 206

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score = 69.8 bits (171), Expect = 1e-13
 Identities = 47/214 (21%), Positives = 98/214 (45%), Gaps = 23/214 (10%)

Query: 29  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 88
           I  +D S+ Y  G  +  +++  I ++S+  +VG +G GKST+ KL+ G  Q  SG +  
Sbjct: 474 IVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL 533

Query: 89  SAKVRIAVFSQHHVDGL--DLSSNPLLY--------MMRCFPGVPEQKLRAHLGSFGVTG 138
           +    +    +H +      L   P ++        ++     V + ++ A      +  
Sbjct: 534 NGF-SLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKD 592

Query: 139 NLALQPM----------YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 188
           ++   P+           ++SGGQK R+A A+       +++LDE +++LD    + ++ 
Sbjct: 593 DIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVN 652

Query: 189 GLV-LFQGGILMVSHDEHLISGSVEELWVVSEGK 221
            L+ L    I+ V+H    ++   +++ V+  GK
Sbjct: 653 NLLNLQDKTIIFVAHRLS-VAKQSDKIIVLDHGK 685

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 69.6 bits (171), Expect = 1e-13
 Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 30/137 (21%)

Query: 58  IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR 117
           I ++GPNGIGK+T +KL+AG ++P  G+      ++++   Q              Y+  
Sbjct: 370 IGILGPNGIGKTTFVKLLAGVIKPDEGSE---EDLKVSYKPQ--------------YISP 412

Query: 118 CFPGVPEQKLRAHLGS-FG-------VTGNLALQPMY-----TLSGGQKSRVAFAKITFK 164
            + G  E  LR+ + S FG       +   L L+ +       LSGG+  RVA A    +
Sbjct: 413 DYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSR 472

Query: 165 KPHIILLDEPSNHLDLD 181
           +  + LLDEPS +LD++
Sbjct: 473 EADLYLLDEPSAYLDVE 489

Length = 591

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 68.2 bits (167), Expect = 1e-13
 Identities = 56/215 (26%), Positives = 94/215 (43%), Gaps = 59/215 (27%)

Query: 51  GIDLDSR----IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 106
           G+ LD R    +A++GPNG GKST+LK ++GEL P SG V               ++G+ 
Sbjct: 19  GVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEV--------------TLNGVP 64

Query: 107 LSSNPLLYMMR-----------CFP----------GVP----------EQKLRAHLGSFG 135
           L+S P   + R            FP           +P          E+     L +  
Sbjct: 65  LNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATD 124

Query: 136 VTGNLALQPMYTLSGGQKSRVAFAKITFK------KPHIILLDEPSNHLDLDAVEALIQG 189
           ++G LA +   TLSGG++ RV  A++  +          + LDEP++ LD+      ++ 
Sbjct: 125 LSG-LAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRL 183

Query: 190 LVLF---QGGILMVSHDEHLISGSVEELWVVSEGK 221
                   G +L V HD +L +   + + ++ +G+
Sbjct: 184 ARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGR 218

Length = 259

>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor

 Score = 67.8 bits (166), Expect = 1e-13
 Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 28/135 (20%)

Query: 58  IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR 117
           I ++GPNGIGK+T +K++AG L+P  G +               ++   +S  P  Y+  
Sbjct: 28  IGILGPNGIGKTTFIKMLAGVLKPDEGDI--------------EIELDTVSYKP-QYIKA 72

Query: 118 CFPGVPEQKLRAHLGSFG--------VTGNLALQPMY-----TLSGGQKSRVAFAKITFK 164
            + G     L +    F         +   L ++ +       LSGG+  RVA A    K
Sbjct: 73  DYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSK 132

Query: 165 KPHIILLDEPSNHLD 179
              I LLDEPS +LD
Sbjct: 133 DADIYLLDEPSAYLD 147

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 67.9 bits (166), Expect = 2e-13
 Identities = 58/187 (31%), Positives = 78/187 (41%), Gaps = 51/187 (27%)

Query: 28  IISFSDASFGYPGGPI-LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86
           I+ F   SF YP        +++F I   S  A++G NG GKSTI KLI G L P     
Sbjct: 5   IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDD--- 61

Query: 87  FRSAKVRIAVFSQHHVDGLDLSS---------------NPLLYMMRCFPG---------- 121
             +   +I       VDG+ L++               NP       F G          
Sbjct: 62  --NPNSKIT------VDGITLTAKTVWDIREKVGIVFQNP----DNQFVGATVGDDVAFG 109

Query: 122 -----VPEQKL----RAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD 172
                VP  ++    R  L   G+   +  +P   LSGGQK RVA A I   +P II+LD
Sbjct: 110 LENRAVPRPEMIKIVRDVLADVGMLDYIDSEPAN-LSGGQKQRVAIAGILAVEPKIIILD 168

Query: 173 EPSNHLD 179
           E ++ LD
Sbjct: 169 ESTSMLD 175

Length = 282

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 66.9 bits (164), Expect = 2e-13
 Identities = 53/210 (25%), Positives = 83/210 (39%), Gaps = 50/210 (23%)

Query: 29  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 88
           I F + +  Y GG     NLN  I     + ++GP+G GK+T +K+I   ++P+SG +F 
Sbjct: 1   IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF- 59

Query: 89  SAKVRIAVFSQHHVDGLDLSSNPLLYMMR----------CFP---------------GVP 123
                        +DG D+     + + R           FP                 P
Sbjct: 60  -------------IDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWP 106

Query: 124 EQKLRA------HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH 177
           ++K+R        L            P + LSGGQ+ RV  A+     P ++L+DEP   
Sbjct: 107 KEKIRERADELLALVGLDPAEFADRYP-HELSGGQQQRVGVARALAADPPLLLMDEPFGA 165

Query: 178 LDLDAVEALIQGLVLFQ----GGILMVSHD 203
           LD    + L +     Q      I+ V+HD
Sbjct: 166 LDPITRDQLQEEFKRLQQELGKTIVFVTHD 195

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 68.8 bits (168), Expect = 2e-13
 Identities = 57/205 (27%), Positives = 103/205 (50%), Gaps = 14/205 (6%)

Query: 34  ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 93
           ++F     P+L KN++F ++    +A+ G  G GKS++L +I GEL+PS G +  S ++ 
Sbjct: 432 SNFSLYVTPVL-KNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRIS 490

Query: 94  IAVFSQHHVDGLDLSSNPLLYM----MRCFPGVPEQKLRAHLGSFGVTGNLAL-QPMYTL 148
            +  +   + G  +  N +  +     R    +   +L   +  F       L +   TL
Sbjct: 491 FSPQTSWIMPG-TIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITL 549

Query: 149 SGGQKSRVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGLVLFQGGILMVSHDE 204
           SGGQ++R++ A+  +K   + LLD P  HLD+    +  E+ +  L+  +  IL+ S  E
Sbjct: 550 SGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLE 609

Query: 205 HLISGSVEELWVVSEGKATPFHGTF 229
           HL     +++ ++ EG    F+GTF
Sbjct: 610 HL--KKADKILLLHEGVCY-FYGTF 631

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 66.8 bits (163), Expect = 2e-13
 Identities = 56/187 (29%), Positives = 90/187 (48%), Gaps = 26/187 (13%)

Query: 44  LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV-FR-------SAKVRIA 95
           +  N++F I     +A+VG +G GKST+L L+ G   P+SG V F        S+  +  
Sbjct: 24  VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83

Query: 96  VFSQ--------HHV----DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ 143
           + +Q        HH+      L+  + PLL + +  P     +    L + G+      +
Sbjct: 84  LRNQKLGFIYQFHHLLPDFTALENVAMPLL-IGKKKPAEINSRALEMLAAVGLEHRANHR 142

Query: 144 PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL---DAVEALIQGLVLFQG-GILM 199
           P   LSGG++ RVA A+     P ++L DEP+ +LD    D++  L+  L   QG   L+
Sbjct: 143 PS-ELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLV 201

Query: 200 VSHDEHL 206
           V+HD  L
Sbjct: 202 VTHDLQL 208

Length = 233

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 66.7 bits (164), Expect = 2e-13
 Identities = 44/158 (27%), Positives = 67/158 (42%), Gaps = 25/158 (15%)

Query: 37  GYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV---------- 86
           GY    ILF  ++  +     +A++G NG GK+T+LK I G L P SG++          
Sbjct: 9   GYGKSQILF-GVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGL 67

Query: 87  --FRSAKVRIA-------VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVT 137
                A+  I        +F +  V+      N LL          + +L      F   
Sbjct: 68  PPHERARAGIGYVPEGRRIFPELTVEE-----NLLLGAYARRRAKRKARLERVYELFPRL 122

Query: 138 GNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS 175
                Q   TLSGG++  +A A+    +P ++LLDEPS
Sbjct: 123 KERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPS 160

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional

 Score = 66.3 bits (162), Expect = 3e-13
 Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 45/212 (21%)

Query: 27  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86
           P++   +  +      IL  N++F +       + GP+G GKST+LK++A  + P+SGT+
Sbjct: 6   PLLQLQNVGYLAGDAKIL-NNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64

Query: 87  FRSAKVRIAVFSQHHVDGLDLSS-NPLLYMMR---C----------------FP------ 120
                           +G D+S+  P +Y  +   C                FP      
Sbjct: 65  L--------------FEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQ 110

Query: 121 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 180
                     L  F +   +  + +  LSGG+K R++  +     P ++LLDE ++ LD 
Sbjct: 111 QPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDE 170

Query: 181 D---AVEALIQGLVLFQG-GILMVSHDEHLIS 208
                V  +I   V  Q   +L V+HD+  I+
Sbjct: 171 SNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN 202

Length = 225

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 65.6 bits (160), Expect = 6e-13
 Identities = 58/174 (33%), Positives = 86/174 (49%), Gaps = 17/174 (9%)

Query: 46  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-------RIAVFS 98
           K +N  I     I+++G +G GKST+L LI+G  QP+SG V    K        R+ VF 
Sbjct: 2   KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQ 61

Query: 99  QHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRA----HLGSFGVTGNLALQPMYTLSGGQK 153
            + +   L +  N  L + R  P + + + RA    H+   G+T   A +    LSGG K
Sbjct: 62  NYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLT-EAADKRPGQLSGGMK 120

Query: 154 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHD 203
            RVA A+    +P ++LLDEP   LD      L + L+      +  +LMV+HD
Sbjct: 121 QRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHD 174

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 65.2 bits (160), Expect = 8e-13
 Identities = 52/211 (24%), Positives = 84/211 (39%), Gaps = 41/211 (19%)

Query: 28  IISFSDASFGYPGGPILFKNLNFGIDLD----SRIAMVGPNGIGKSTILKLIAGELQPSS 83
           ++   + S  +P G    K L+  +         + +VG +G GKST+ + I G L+P+S
Sbjct: 1   LLEVKNLSVSFPTGGGSVKALD-DVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTS 59

Query: 84  GTVFRSAKV--------------RIAVFSQHHVDGLDLSSNPL----------LYMMRCF 119
           G++    K                I +  Q        S NP           L +    
Sbjct: 60  GSIIFDGKDLLKLSRRLRKIRRKEIQMVFQD----PMSSLNPRMTIGEQIAEPLRIHGKL 115

Query: 120 PGVPEQKLRAHLGSFGVTGNLALQPMY--TLSGGQKSRVAFAKITFKKPHIILLDEPSNH 177
                +K    L   GV     +   Y   LSGGQ+ RVA A+     P +++ DEP++ 
Sbjct: 116 SKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSA 175

Query: 178 LDLDAVEALIQGLVL-----FQGGILMVSHD 203
           LD+  V+A I  L+          +L ++HD
Sbjct: 176 LDVS-VQAQILDLLKKLQEELGLTLLFITHD 205

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 56/191 (29%), Positives = 89/191 (46%), Gaps = 30/191 (15%)

Query: 43  ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF------------RSA 90
            + K ++  I     +A+VG +G GKST+L L+ G   P+SG V               A
Sbjct: 19  RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERA 78

Query: 91  KVRIA----VFSQHHV----DGLDLSSNPLLYMMRCFPGVPEQKLRAH--LGSFGVTGNL 140
           K+R      ++  HH+      L+  + PLL   +    V E K RA+  L   G+   +
Sbjct: 79  KLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKK---SVKEAKERAYEMLEKVGLEHRI 135

Query: 141 ALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEA---LIQGLVLFQG-G 196
             +P   LSGG++ RVA A+    +P ++L DEP+ +LD +  +    L+  L       
Sbjct: 136 NHRPS-ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTS 194

Query: 197 ILMVSHDEHLI 207
            L+V+HD  L 
Sbjct: 195 FLVVTHDLELA 205

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 65.1 bits (159), Expect = 1e-12
 Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 22/157 (14%)

Query: 38  YPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRI--- 94
           Y G P L +++N  ++    + ++GP+G GK+T+L LIAG +    G++       +   
Sbjct: 11  YGGKPAL-EDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI-TLDGKPVEGP 68

Query: 95  ----AVFSQHHVDGL----DLSSNPLLYMMRCFPGVP----EQKLRAHLGSFGVTGNLAL 142
                V  Q+  +GL    ++  N    +     GV      +     L   G+ G    
Sbjct: 69  GAERGVVFQN--EGLLPWRNVQDNVAFGLQ--LAGVEKMQRLEIAHQMLKKVGLEGAEK- 123

Query: 143 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
           + ++ LSGGQ+ RV  A+     P ++LLDEP   LD
Sbjct: 124 RYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALD 160

Length = 255

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score = 66.2 bits (162), Expect = 1e-12
 Identities = 63/238 (26%), Positives = 109/238 (45%), Gaps = 41/238 (17%)

Query: 16  EFPTPDDR---PGPP-IISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKS 69
            +P+ D     P P   +S  + +   PGG  P L + ++F +     +A++GP+G GKS
Sbjct: 300 NYPSRDPAMPLPEPEGHLSVENVTIVPPGGKKPTL-RGISFSLQAGEALAIIGPSGSGKS 358

Query: 70  TILKLIAGELQPSSGTVFRSAKVRI--AVFSQHHVDGLDLSSNPLLYMMRCFPG------ 121
           T+ +LI G   P+SG       VR+  A   Q   +        L   +  FPG      
Sbjct: 359 TLARLIVGIWPPTSG------SVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENI 412

Query: 122 ------VPEQKLRAHLGSFGVTGNLALQPM-Y---------TLSGGQKSRVAFAKITFKK 165
                    +K+       GV   +   P  Y         TLSGGQ+ R+A A+  +  
Sbjct: 413 ARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGD 472

Query: 166 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGI-LMVSHDEHLISGSVEELWVVSEG 220
           P +++LDEP+++LD +  +AL   +     +G   ++++H   L+ G V+++ V+ +G
Sbjct: 473 PKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLL-GCVDKILVLQDG 529

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 65.4 bits (160), Expect = 1e-12
 Identities = 52/212 (24%), Positives = 88/212 (41%), Gaps = 51/212 (24%)

Query: 28  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           +I F + S  Y G      ++N  I+    + ++GP+G GK+T LK+I   ++P+SG + 
Sbjct: 1   MIEFENVSKRY-GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL 59

Query: 88  RSAKVRIAVFSQHHVDGLDLSSNPLLYMMR----------CFP---------------GV 122
                         +DG D+S    + + R           FP               G 
Sbjct: 60  --------------IDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGW 105

Query: 123 PEQKLRAH----LGSFGVTGNLALQ--PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 176
            +++++      L   G+  +      P + LSGGQ+ RV  A+     P I+L+DEP  
Sbjct: 106 DKERIKKRADELLDLVGLDPSEYADRYP-HELSGGQQQRVGVARALAADPPILLMDEPFG 164

Query: 177 HLDLDAVEALIQGLVLFQGG----ILMVSHDE 204
            LD    + L + +   Q      I+ V+HD 
Sbjct: 165 ALDPITRKQLQEEIKELQKELGKTIVFVTHDI 196

Length = 309

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 64.2 bits (157), Expect = 1e-12
 Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 26/155 (16%)

Query: 46  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF--------RSAKVR-IA- 95
            +LN  I     + ++GP+G GK+T L++IAG  +P+SG ++           K R IA 
Sbjct: 17  DDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAM 76

Query: 96  VFSQH----HVDGLDLSSNPLLYMMRCFPGVP-EQKLR--AHLGSFGVTGNLALQPMYTL 148
           VF  +    H+   D  +  L   +R  P    ++++R  A L    +   L  +P   L
Sbjct: 77  VFQNYALYPHMTVYDNIAFGL--KLRKVPKDEIDERVREVAEL--LQIEHLLDRKPK-QL 131

Query: 149 SGGQKSRVAFAKITFKKPHIILLDEP-SNHLDLDA 182
           SGGQ+ RVA  +   ++P + L+DEP SN   LDA
Sbjct: 132 SGGQRQRVALGRAIVREPKVFLMDEPLSN---LDA 163

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 64.6 bits (158), Expect = 1e-12
 Identities = 68/201 (33%), Positives = 95/201 (47%), Gaps = 41/201 (20%)

Query: 29  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF- 87
           +  +D ++ Y   P+ F   +  ++   R+A++GP+G GKST+L LIAG L P+SG++  
Sbjct: 2   LKLTDITWLYHHLPMRF---DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTL 58

Query: 88  ------RSAKVRIAV---------FSQHHVD---GLDLSSNPLLYMMRCFPGVPEQKLRA 129
                  +   R  V         FS   V    GL L  NP L +         +KL A
Sbjct: 59  NGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGL--NPGLKL----NAAQREKLHA 112

Query: 130 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQG 189
                G+   LA  P   LSGGQ+ RVA A+   ++  I+LLDEP + LD     AL Q 
Sbjct: 113 IARQMGIEDLLARLP-GQLSGGQRQRVALARCLVREQPILLLDEPFSALD----PALRQE 167

Query: 190 -LVLF-------QGGILMVSH 202
            L L        Q  +LMVSH
Sbjct: 168 MLTLVSQVCQERQLTLLMVSH 188

Length = 232

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 64.7 bits (158), Expect = 2e-12
 Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 19/164 (11%)

Query: 35  SFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR------ 88
           + GY    IL  +L+  +      A++GPNG GKST+LK  A  L P SGTVF       
Sbjct: 9   TVGYGTKRIL-NDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPIS 67

Query: 89  --SAKV---RIAVFSQHHVDGLDLSSNPLLYMMRC----FPGVPEQKLRAHLG-SFGVTG 138
             S++    R+A+  QHH+    ++   L+   R       G    +  A +  +   T 
Sbjct: 68  MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTR 127

Query: 139 --NLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 180
             +LA + +  LSGGQ+ R   A +  +   ++LLDEP+ +LD+
Sbjct: 128 INHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDI 171

Length = 255

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 64.5 bits (157), Expect = 2e-12
 Identities = 52/165 (31%), Positives = 75/165 (45%), Gaps = 20/165 (12%)

Query: 58  IAMVGPNGIGKSTILKLIAGELQPSSGTV------FRSAKVRIAVFSQHH---------V 102
           + ++GPNG GK+T+L+ I G + P+ GTV             I    Q H         V
Sbjct: 9   LGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISV 68

Query: 103 DGLDLSSNPLLYMMRCFPGVPE-QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI 161
               +S           P V +   +R  L   G+T  LA +P+  LSGGQ+ RV  A+ 
Sbjct: 69  AHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLT-ELADRPVGELSGGQRQRVLVARA 127

Query: 162 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQG---GILMVSHD 203
              +P ++LLDEP   LD+   E L +  +   G    ILM +HD
Sbjct: 128 LATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHD 172

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 65.2 bits (159), Expect = 2e-12
 Identities = 63/219 (28%), Positives = 97/219 (44%), Gaps = 26/219 (11%)

Query: 24  PGP-PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS 82
           P     I F +    Y G  ++   L+F +       ++GPNG GK+T L+++ G   P 
Sbjct: 2   PMSVAPIDFRNVEKRY-GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD 60

Query: 83  SGTVF----------RSAKVRIAVFSQHHVDGLD----LSSNPLLYMMRCFPGVPEQKLR 128
           +G++           R A+ R+ V  Q   D LD    +  N LL   R F G+     R
Sbjct: 61  AGSISLCGEPVPSRARHARQRVGVVPQ--FDNLDPDFTVREN-LLVFGRYF-GLSAAAAR 116

Query: 129 AH---LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEA 185
           A    L  F    N A   +  LSGG K R+  A+     P +++LDEP+  LD  A   
Sbjct: 117 ALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHL 176

Query: 186 LIQGL--VLFQGG-ILMVSHDEHLISGSVEELWVVSEGK 221
           + + L  +L +G  IL+ +H         + L V+ EG+
Sbjct: 177 MWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGR 215

Length = 306

>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 64.9 bits (158), Expect = 2e-12
 Identities = 60/220 (27%), Positives = 105/220 (47%), Gaps = 27/220 (12%)

Query: 29  ISFSDASFGY-PGGPILFK---NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 84
           I F +  + Y PG P+  K   N++F ++  S +A+VG  G GKST+++     L+PSSG
Sbjct: 3   IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62

Query: 85  TVFRSA-------------KVRIAVFSQHHVDGLDLSSNPLLYMMRCFP---GVPEQKLR 128
           T+  +              K+R  V          L  N +L  +   P   G  E + +
Sbjct: 63  TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAK 122

Query: 129 AH----LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE 184
                 L   G++ +L  +  + LSGGQ  RVA A +   +P I+ LDEP+  LD +  +
Sbjct: 123 EKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRK 182

Query: 185 ALIQGLVLFQGG---ILMVSHDEHLISGSVEELWVVSEGK 221
            ++Q    +Q     +++V+H+   ++   +++ V+  GK
Sbjct: 183 EMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGK 222

Length = 287

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 53/184 (28%), Positives = 82/184 (44%), Gaps = 48/184 (26%)

Query: 29  ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           I     +F Y P GP++  +++  I+    +A+VGP+G GKST+L+L+ G   P SG+VF
Sbjct: 452 IEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVF 511

Query: 88  RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF------------- 134
                    +    + GLD+ +      +R   GV  Q  R   GS              
Sbjct: 512 ---------YDGQDLAGLDVQA------VRRQLGVVLQNGRLMSGSIFENIAGGAPLTLD 556

Query: 135 ---------GVTGNLALQPM----------YTLSGGQKSRVAFAKITFKKPHIILLDEPS 175
                    G+  ++   PM           TLSGGQ+ R+  A+   +KP I+L DE +
Sbjct: 557 EAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEAT 616

Query: 176 NHLD 179
           + LD
Sbjct: 617 SALD 620

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 64.1 bits (156), Expect = 2e-12
 Identities = 51/181 (28%), Positives = 87/181 (48%), Gaps = 26/181 (14%)

Query: 29  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 88
           I F + S+   G  IL K+++   +  +   +VGP+G GKST++KLI   + P+ G++  
Sbjct: 4   IEFKEVSYSSFGKEIL-KDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILI 62

Query: 89  SA-----------KVRIA-VFSQHHV-DGL---DLSSNPLLYMMRCFPGVPEQKLRAHLG 132
                        + +I  VF Q H+ +G    ++   P+L       G     +  +L 
Sbjct: 63  DGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPML------KGEKNVDVEYYLS 116

Query: 133 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDAVEALIQG 189
             G+    A + +  LSGG+  RV+ A+     P ++LLDEP++ LD    + +E LI  
Sbjct: 117 IVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVK 176

Query: 190 L 190
           L
Sbjct: 177 L 177

Length = 241

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 63.7 bits (155), Expect = 3e-12
 Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 23/196 (11%)

Query: 28  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS---SG 84
           ++   + S   PG  +L  N+NF I     + ++GP+G GKST+L  + G L      +G
Sbjct: 2   MLCLKNVSLRLPGSCLL-ANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTG 60

Query: 85  TVFRSAKVRIAV-FSQHHV----------DGLDLSSNPLLYMMRCFPGVPEQKL-RAHLG 132
            ++ + +    +  +Q  +            L +  N L  +     G   +    A L 
Sbjct: 61  ELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALE 120

Query: 133 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL 192
             G+ G    Q   TLSGGQ++RVA  +    +P  +LLDEP + LD+ A+    +  V 
Sbjct: 121 RSGLDG-AFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV-ALRDQFRQWVF 178

Query: 193 FQ---GGI--LMVSHD 203
            +    GI  + V+HD
Sbjct: 179 SEVRAAGIPTVQVTHD 194

Length = 213

>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C

 Score = 63.6 bits (155), Expect = 3e-12
 Identities = 49/194 (25%), Positives = 83/194 (42%), Gaps = 38/194 (19%)

Query: 29  ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           I   + S  Y P  P + KN++F +    +I +VG  G GKST++  +   L+   G + 
Sbjct: 7   IEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKI- 65

Query: 88  RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYT 147
                         +DG+D+S+ PL  +      +P+      L S  +  NL     Y+
Sbjct: 66  -------------EIDGIDISTIPLEDLRSSLTIIPQDPT---LFSGTIRSNLDPFDEYS 109

Query: 148 ----------------LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV 191
                           LS GQ+  +  A+   K+P +++LDE +  +D    +ALIQ  +
Sbjct: 110 DEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYAT-DALIQKTI 168

Query: 192 --LFQGG-ILMVSH 202
              F    IL ++H
Sbjct: 169 REEFTNSTILTIAH 182

Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 64.0 bits (156), Expect = 3e-12
 Identities = 51/192 (26%), Positives = 92/192 (47%), Gaps = 28/192 (14%)

Query: 35  SFGYPGGP-ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV- 92
           S  Y G P    ++++  I     + ++GP+G GK+T+L LIAG + PS G++  + +  
Sbjct: 10  SLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRI 69

Query: 93  ------RIAVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL--- 142
                 R  VF    +   L++  N + + ++   G+ + + R           LAL   
Sbjct: 70  EGPGAERGVVFQNEALLPWLNVIDN-VAFGLQ-LRGIEKAQRREI-----AHQMLALVGL 122

Query: 143 -----QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV-LFQ-- 194
                + ++ LSGG + RV  A+    +P ++LLDEP   LD    E + + L+ L+Q  
Sbjct: 123 EGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQET 182

Query: 195 -GGILMVSHDEH 205
              +L+++HD  
Sbjct: 183 GKQVLLITHDIE 194

Length = 259

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 63.5 bits (155), Expect = 3e-12
 Identities = 57/201 (28%), Positives = 94/201 (46%), Gaps = 29/201 (14%)

Query: 46  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA---------KVRIAV 96
           KN++  ++      ++GP G GKS +L+ IAG ++P SG +  +          K  I+ 
Sbjct: 16  KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISY 75

Query: 97  FSQHHV--DGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSG 150
             Q++     + +  N + Y ++    V     E+K+       G+   L  +P  TLSG
Sbjct: 76  VPQNYALFPHMTVYKN-IAYGLK-KRKVDKKEIERKVLEIAEMLGIDHLLNRKPE-TLSG 132

Query: 151 GQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDEHL 206
           G++ RVA A+     P I+LLDEP + LD+   E L + L      F   +L V+HD   
Sbjct: 133 GEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHD--- 189

Query: 207 ISGSVEELWVVSEGKATPFHG 227
                EE W +++  A   +G
Sbjct: 190 ----FEEAWALADKVAIMLNG 206

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score = 65.0 bits (159), Expect = 3e-12
 Identities = 49/187 (26%), Positives = 76/187 (40%), Gaps = 53/187 (28%)

Query: 25  GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 84
             P++     S  + G  ++  NL+  I+    + ++GP+G GK+T+L+LIAG   P SG
Sbjct: 11  LSPLVELRGISKSFDGKEVI-SNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSG 69

Query: 85  TVFRSAKVRIAVFSQHHVDGLDLSSNP--------------LLYMMRCFPGV-------- 122
            +               +DG D++  P              L   M  F  V        
Sbjct: 70  RIM--------------LDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQK 115

Query: 123 -PEQKLRA---------HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD 172
            P  ++            L  F      A +  + LSGGQ+ RVA A+    KP ++LLD
Sbjct: 116 TPAAEITPRVMEALRMVQLEEF------AQRKPHQLSGGQQQRVAIARAVVNKPKVLLLD 169

Query: 173 EPSNHLD 179
           E  + LD
Sbjct: 170 ESLSALD 176

Length = 375

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 63.1 bits (154), Expect = 4e-12
 Identities = 43/145 (29%), Positives = 62/145 (42%), Gaps = 17/145 (11%)

Query: 59  AMVGPNGIGKSTILKLIAGELQPSSGTV------FRSAKVRI-----AVFSQHHVDGLDL 107
           A++GPNG GKST+  L+        G +       R A          VF Q  +D LDL
Sbjct: 31  ALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLD-LDL 89

Query: 108 SSNPLLYMMRCFPGVPEQKLRAH----LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF 163
           S    L       G+   + RA     L   G+    A   +  L+GG + RV  A+   
Sbjct: 90  SVRQNLRYHAALHGLSRAEARARIAELLARLGLAER-ADDKVRELNGGHRRRVEIARALL 148

Query: 164 KKPHIILLDEPSNHLDLDAVEALIQ 188
            +P ++LLDEP+  LD  +  A+  
Sbjct: 149 HRPALLLLDEPTVGLDPASRAAITA 173

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 63.9 bits (156), Expect = 5e-12
 Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 15/148 (10%)

Query: 46  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF--------RSAKVR--IA 95
             +NF +        +GPNG GK+T ++++   L+P+SGT             KVR  I 
Sbjct: 10  DGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIG 69

Query: 96  VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH----LGSFGVTGNLALQPMYTLSGG 151
           +  Q+     DL+    L MM    G+P+ +        L  F + G  A +P+ T SGG
Sbjct: 70  IVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFEL-GEAADRPVGTYSGG 128

Query: 152 QKSRVAFAKITFKKPHIILLDEPSNHLD 179
            + R+  A     +P ++ LDEP+  LD
Sbjct: 129 MRRRLDIAASLIHQPDVLFLDEPTTGLD 156

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 63.5 bits (155), Expect = 5e-12
 Identities = 62/217 (28%), Positives = 89/217 (41%), Gaps = 60/217 (27%)

Query: 27  PIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 84
            II     SF YP      L K+++F +     +A+VG NG GKST+ KL+ G L P +G
Sbjct: 4   EIIRVEHISFRYPDAATYAL-KDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG 62

Query: 85  TV-----------------------------FRSAKVRIAVFSQHHVDGLDLSSNPLLYM 115
           T+                             F  A V+  V       GL+    P   M
Sbjct: 63  TITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDV-----AFGLENIGVPREEM 117

Query: 116 MRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS 175
           +     V +   +  +  F        +  + LSGGQK RVA A +   +P II+LDE +
Sbjct: 118 VE---RVDQALRQVGMEDF------LNREPHRLSGGQKQRVAIAGVLALQPDIIILDEAT 168

Query: 176 NHLD-------LDAVEALIQGLVLFQGGILMVS--HD 203
           + LD       L+ V  L +     Q GI ++S  HD
Sbjct: 169 SMLDPRGRREVLETVRQLKE-----QKGITVLSITHD 200

Length = 279

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 62.6 bits (153), Expect = 6e-12
 Identities = 51/212 (24%), Positives = 84/212 (39%), Gaps = 50/212 (23%)

Query: 29  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG-----ELQPSS 83
           I   D +  Y     L K+++  I      A++GP+G GKST+L+L+          P  
Sbjct: 1   IELRDLNVYYGDKHAL-KDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDE 59

Query: 84  GTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRC---------FPG------------- 121
           G V    K           D  DL  + L    R          FPG             
Sbjct: 60  GEVLLDGK-----------DIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLH 108

Query: 122 ------VPEQKLRAHLGSFGVTGNLALQPM-YTLSGGQKSRVAFAKITFKKPHIILLDEP 174
                   ++++   L    +   +  +     LSGGQ+ R+  A+    +P ++LLDEP
Sbjct: 109 GIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEP 168

Query: 175 SNHLDLDA---VEALIQGLVLFQGGILMVSHD 203
           ++ LD  +   +E LI  L   +  I++V+H+
Sbjct: 169 TSALDPISTAKIEELIAELKK-EYTIVIVTHN 199

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 63.3 bits (154), Expect = 6e-12
 Identities = 67/241 (27%), Positives = 110/241 (45%), Gaps = 33/241 (13%)

Query: 29  ISFSDASFGY-PGGPILFK---NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 84
           I F + S+ Y  G P   +   ++N   +     A+VG  G GKST+++ I   L+P++G
Sbjct: 3   IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTG 62

Query: 85  TV---------------FRSAKVRIAVFSQHHVDGL--DLSSNPLLYMMRCFP-GVPEQK 126
           TV                R  + RI +  Q     L  D     +++  + F   + E K
Sbjct: 63  TVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVK 122

Query: 127 LRAH--LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LD 181
             AH  L   G + ++  Q  + +SGGQ  ++A   I    P II+LDEP+  LD     
Sbjct: 123 NYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKR 182

Query: 182 AVEALIQGLVLFQG-GILMVSHDEHLISGSVEELWVVSEG----KATPFHGTFHDYKKML 236
            V  L++ L   +   I++VSHD + ++   +E+ V+ EG    + +P    F D KK+ 
Sbjct: 183 QVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSP-KELFKDKKKLA 241

Query: 237 Q 237
            
Sbjct: 242 D 242

Length = 286

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 62.9 bits (154), Expect = 7e-12
 Identities = 48/182 (26%), Positives = 73/182 (40%), Gaps = 52/182 (28%)

Query: 27  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86
           P++   + S GY     L + ++  ++    +A++G NG GK+T+LK I G ++P SG +
Sbjct: 2   PMLEVENLSAGYGKIQAL-RGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI 60

Query: 87  FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPG---VPEQKLRAHLGSFGVTGNLAL- 142
                           DG D++  P     R   G   VPE   R       V  NL L 
Sbjct: 61  I--------------FDGEDITGLPPHERARL--GIAYVPE--GRRIFPRLTVEENLLLG 102

Query: 143 -----------------------------QPMYTLSGGQKSRVAFAKITFKKPHIILLDE 173
                                        Q   TLSGG++  +A A+    +P ++LLDE
Sbjct: 103 AYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDE 162

Query: 174 PS 175
           PS
Sbjct: 163 PS 164

Length = 237

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score = 63.3 bits (154), Expect = 8e-12
 Identities = 48/162 (29%), Positives = 73/162 (45%), Gaps = 18/162 (11%)

Query: 60  MVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCF 119
           ++GP+G GK+T+L+L+AG  QP SG++    +    V        +   S  L   M   
Sbjct: 1   LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVE 60

Query: 120 P---------GVPEQ----KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP 166
                      VP      ++   L    +      +P + LSGGQ+ RVA A+    KP
Sbjct: 61  ENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKP-HQLSGGQQQRVALARALVFKP 119

Query: 167 HIILLDEPSNHLDLDAVEALIQGLVLFQG--GI--LMVSHDE 204
            I+LLDEP + LD    + +   L   Q   GI  + V+HD+
Sbjct: 120 KILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQ 161

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score = 63.8 bits (156), Expect = 9e-12
 Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 8/95 (8%)

Query: 1   MGHVDEVVNDP-DYKFEFPTPDDRPGPPI------ISFSDASFGY-PGGPILFKNLNFGI 52
           +  +D+V+ +P D   E          P       +   + +FGY P  P L +N +  +
Sbjct: 443 LNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTL 502

Query: 53  DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
               R+A+VG +G GKSTI KL+AG  QP SG + 
Sbjct: 503 QPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEIL 537

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 62.1 bits (151), Expect = 1e-11
 Identities = 55/195 (28%), Positives = 89/195 (45%), Gaps = 22/195 (11%)

Query: 46  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF---RSA------KVRIAV 96
            ++N  +   S +A++GP+G GKST+L++IAG  QP SG +    + A        +I  
Sbjct: 17  DDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGF 76

Query: 97  FSQHHV--DGLDLSSNPL--LYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMY--TLSG 150
             QH+     L +  N    L + +      + ++   L    + G   L   Y   LSG
Sbjct: 77  VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEG---LGDRYPNQLSG 133

Query: 151 GQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGI----LMVSHDEHL 206
           GQ+ RVA A+    +P ++LLDEP   LD    + L   L      +    + V+HD+  
Sbjct: 134 GQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEE 193

Query: 207 ISGSVEELWVVSEGK 221
                + + V+S GK
Sbjct: 194 AMEVADRIVVMSNGK 208

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score = 62.1 bits (151), Expect = 1e-11
 Identities = 49/198 (24%), Positives = 81/198 (40%), Gaps = 53/198 (26%)

Query: 29  ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           I+F    F Y P GP++  N++  I     + +VG +G GKST+ KLI     P +G V 
Sbjct: 1   ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60

Query: 88  RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----Q 143
                         VDG DL+     ++ R    V ++ +   L +  +  N+AL     
Sbjct: 61  --------------VDGHDLALADPAWLRRQVGVVLQENV---LFNRSIRDNIALADPGM 103

Query: 144 PMY-------------------------------TLSGGQKSRVAFAKITFKKPHIILLD 172
            M                                 LSGGQ+ R+A A+     P I++ D
Sbjct: 104 SMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFD 163

Query: 173 EPSNHLDLDAVEALIQGL 190
           E ++ LD ++  A+++ +
Sbjct: 164 EATSALDYESEHAIMRNM 181

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 63.6 bits (155), Expect = 1e-11
 Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 45/197 (22%)

Query: 29  ISFSDASFGYPGGPI-LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV- 86
           + F + +F YPG       +++  I+    +A+VG +G GKST++ LI    +P SG + 
Sbjct: 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQIL 390

Query: 87  ----------FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLR-----AHL 131
                       S + ++A+ SQ  V   D  +N + Y           ++      A+ 
Sbjct: 391 LDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRT--EQADRAEIERALAAAYA 448

Query: 132 GSF------------GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
             F            G  G L       LSGGQ+ R+A A+   K   I++LDE ++ LD
Sbjct: 449 QDFVDKLPLGLDTPIGENGVL-------LSGGQRQRLAIARALLKDAPILILDEATSALD 501

Query: 180 -------LDAVEALIQG 189
                    A+E L+QG
Sbjct: 502 NESERLVQAALERLMQG 518

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 61.9 bits (151), Expect = 1e-11
 Identities = 58/208 (27%), Positives = 87/208 (41%), Gaps = 49/208 (23%)

Query: 29  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 88
           I   + S  Y G   L   ++  I       ++GP+G GK+T+L+LIAG   P+SG +  
Sbjct: 1   IELENVSKFYGGFVAL-DGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILL 59

Query: 89  SAKVRIA-----------VFSQH-----HVDGLDLSSNPLLYMMRCFP----GVPEQKLR 128
             K  I            VF Q+     H   L +  N        F      +P+ +++
Sbjct: 60  DGK-DITNLPPHKRPVNTVF-QNYALFPH---LTVFENI------AFGLRLKKLPKAEIK 108

Query: 129 AHLGSFGVTGNLALQPM--------YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 180
                  V   L L  +          LSGGQ+ RVA A+    +P ++LLDEP   LDL
Sbjct: 109 E-----RVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDL 163

Query: 181 DAVEALIQGLVLFQG--GI--LMVSHDE 204
              + +   L   Q   GI  + V+HD+
Sbjct: 164 KLRKDMQLELKRLQKELGITFVFVTHDQ 191

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 62.9 bits (153), Expect = 1e-11
 Identities = 56/182 (30%), Positives = 86/182 (47%), Gaps = 56/182 (30%)

Query: 59  AMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPL----LY 114
           A++G +G GKST+L+++AG  QP++G +               +DG+DLS  P     + 
Sbjct: 49  ALLGASGCGKSTLLRMLAGFEQPTAGQIM--------------LDGVDLSHVPPYQRPIN 94

Query: 115 MM----RCFP----------GVPEQKLRAHLGSFGVTGNLALQPM--------YTLSGGQ 152
           MM      FP          G+ + KL     +  V   L L  M        + LSGGQ
Sbjct: 95  MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQ 154

Query: 153 KSRVAFAKITFKKPHIILLDEPSNHLD--------LDAVEALIQGLVLFQGGI--LMVSH 202
           + RVA A+   K+P ++LLDEP   LD        L+ V+      +L + G+  +MV+H
Sbjct: 155 RQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVD------ILERVGVTCVMVTH 208

Query: 203 DE 204
           D+
Sbjct: 209 DQ 210

Length = 377

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 61.8 bits (151), Expect = 1e-11
 Identities = 48/197 (24%), Positives = 80/197 (40%), Gaps = 48/197 (24%)

Query: 58  IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPL----- 112
           + ++GPNG GK+T   +I G ++P SG +               +DG D++  P+     
Sbjct: 29  VGLLGPNGAGKTTTFYMIVGLVKPDSGKIL--------------LDGQDITKLPMHKRAR 74

Query: 113 -------------------------LYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYT 147
                                    L +        E+KL   L  F +T +L      +
Sbjct: 75  LGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHIT-HLRKSKASS 133

Query: 148 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV---EALIQGLVLFQGGILMVSHDE 204
           LSGG++ RV  A+     P  +LLDEP   +D  AV   + +I+ L     G+L+  H+ 
Sbjct: 134 LSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNV 193

Query: 205 HLISGSVEELWVVSEGK 221
                  +  +++ EGK
Sbjct: 194 RETLSITDRAYIIYEGK 210

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 61.0 bits (149), Expect = 1e-11
 Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 44/184 (23%)

Query: 40  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG--ELQPSSGTVFRSAKVRIAVF 97
           G  IL K +N  I      A++GPNG GKST+ K I G  + + + G +           
Sbjct: 12  GKEIL-KGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEIL---------- 60

Query: 98  SQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF----------GVTGNLALQPM-Y 146
                 G D++  P           PE+  RA LG F          GV     L+ +  
Sbjct: 61  ----FKGEDITDLP-----------PEE--RARLGIFLAFQYPPEIPGVKNADFLRYVNE 103

Query: 147 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQG---GILMVSHD 203
             SGG+K R    ++   +P + +LDEP + LD+DA+  + + +   +     +L+++H 
Sbjct: 104 GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHY 163

Query: 204 EHLI 207
           + L+
Sbjct: 164 QRLL 167

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 54/188 (28%), Positives = 78/188 (41%), Gaps = 51/188 (27%)

Query: 28  IISFSDASFGYPGG-----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS 82
           +I   + S+ Y         +   ++N  +     + ++G NG GKSTI K +   L PS
Sbjct: 4   MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS 63

Query: 83  SGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGV----PEQKLRAHLG----SF 134
            G V+              VDGLD S    L+ +R   G+    P+ ++ A +     +F
Sbjct: 64  EGKVY--------------VDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAF 109

Query: 135 GVTGNLALQP---------------MYT--------LSGGQKSRVAFAKITFKKPHIILL 171
           G   NL + P               MY         LSGGQK RVA A I   +P  I+ 
Sbjct: 110 G-PENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIF 168

Query: 172 DEPSNHLD 179
           DEP+  LD
Sbjct: 169 DEPTAMLD 176

Length = 280

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 61.4 bits (150), Expect = 2e-11
 Identities = 52/195 (26%), Positives = 82/195 (42%), Gaps = 61/195 (31%)

Query: 51  GIDLD----SRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 106
           GI L       + ++GP+G GKST+L+ + G  +P SG++               VDG D
Sbjct: 20  GISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT--------------VDGED 65

Query: 107 LSSNPLLYMMRCFPG-VPEQ-KLRAHLGSFGVTGNLALQPM------------------- 145
           +     +  +R   G V +Q  L  HL    V  N+ L P+                   
Sbjct: 66  VGDKKDILKLRRKVGMVFQQFNLFPHLT---VLENVTLAPVKVKKLSKAEAREKALELLE 122

Query: 146 ------------YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDAVEALIQGL 190
                         LSGGQ+ RVA A+     P ++L DEP++ LD   +  V  +++ L
Sbjct: 123 KVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL 182

Query: 191 VLFQGGILM--VSHD 203
              + G+ M  V+H+
Sbjct: 183 A--EEGMTMIIVTHE 195

Length = 240

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 61.0 bits (149), Expect = 2e-11
 Identities = 51/201 (25%), Positives = 79/201 (39%), Gaps = 72/201 (35%)

Query: 51  GIDLD----SRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 106
           GIDL       + ++GP+G GKST+L+ I    +P SGT+               +DGL 
Sbjct: 18  GIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII--------------IDGLK 63

Query: 107 LSSNPLLYMMRCFPGVPEQKLRAHLG----SFG------VTGNLALQPMY---------- 146
           L+                 +LR  +G     F       V  N+ L P+           
Sbjct: 64  LTD----------DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAE 113

Query: 147 ---------------------TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEA 185
                                 LSGGQ+ RVA A+     P ++L DEP++ LD + V  
Sbjct: 114 ERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGE 173

Query: 186 LIQGLV-LFQGGILM--VSHD 203
           ++  +  L + G+ M  V+H+
Sbjct: 174 VLDVMKDLAEEGMTMVVVTHE 194

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 42/211 (19%), Positives = 75/211 (35%), Gaps = 85/211 (40%)

Query: 29  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 88
           I F + +F Y     + K++NF I     +A+VGP G GK+T++ L+     P  G +  
Sbjct: 3   IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQIL- 61

Query: 89  SAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTL 148
                        +DG+D+              +  + LR+ +G       + LQ  +  
Sbjct: 62  -------------IDGIDIRD------------ISRKSLRSMIG-------VVLQDTFLF 89

Query: 149 SG---------------------------------------------------GQKSRVA 157
           SG                                                   G++  +A
Sbjct: 90  SGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLA 149

Query: 158 FAKITFKKPHIILLDEPSNHLDLDAVEALIQ 188
            A+   + P I++LDE ++++D +  E LIQ
Sbjct: 150 IARAMLRDPKILILDEATSNIDTET-EKLIQ 179

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 60.9 bits (148), Expect = 3e-11
 Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 45/164 (27%)

Query: 46  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL 105
           ++++F  +      ++G NG GK+T+L++IA  L P SG V               +DG+
Sbjct: 19  RDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT--------------IDGV 64

Query: 106 DLSSNPLLYMMRCFPGV-PEQK-------LRAHLGSFG----------------VTGNLA 141
           D   +P     +   GV   ++        R +L  F                 ++  L 
Sbjct: 65  DTVRDPSFVRRKI--GVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQ 122

Query: 142 LQPMY-----TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 180
           L           S G K +VA A+     P I++LDEP++ LD+
Sbjct: 123 LLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDI 166

Length = 245

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 60.5 bits (147), Expect = 3e-11
 Identities = 52/187 (27%), Positives = 77/187 (41%), Gaps = 50/187 (26%)

Query: 59  AMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPL------ 112
            ++GPNG GK+T L+++AG L+P +G                 VDG D+   P       
Sbjct: 35  GLLGPNGAGKTTTLRMLAGLLEPDAGFA--------------TVDGFDVVKEPAEARRRL 80

Query: 113 --------LY-------MMRCFP---GVPEQKLRAHL----GSFGVTGNLALQPMYTLSG 150
                   LY        +  F    G+   +L A L       G+   L  + +   S 
Sbjct: 81  GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGM-EELLDRRVGGFST 139

Query: 151 GQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL-VLFQGG--ILMVSHDEHLI 207
           G + +VA A+     P ++LLDEP+  LD+ A  AL + +  L   G  IL  +H    I
Sbjct: 140 GMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTH----I 195

Query: 208 SGSVEEL 214
              VE L
Sbjct: 196 MQEVERL 202

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 60.5 bits (147), Expect = 3e-11
 Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 15/148 (10%)

Query: 46  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT--------VFRSAKVR--IA 95
           + ++F +       ++GPNG GK+T +K++   L+P+SG         V    +VR  I 
Sbjct: 17  RGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIG 76

Query: 96  -VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLR---AHLGSFGVTGNLALQPMYTLSGG 151
            VF    VD  +L+    LY+     GVP  + R     L  F      A + + T SGG
Sbjct: 77  IVFQDLSVDD-ELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGG 135

Query: 152 QKSRVAFAKITFKKPHIILLDEPSNHLD 179
            + R+  A+    +P ++ LDEP+  LD
Sbjct: 136 MRRRLEIARSLVHRPEVLFLDEPTIGLD 163

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 61.8 bits (151), Expect = 3e-11
 Identities = 44/179 (24%), Positives = 82/179 (45%), Gaps = 25/179 (13%)

Query: 49  NFGIDLDSRI----AMVGPNGIGKSTILKLIAGELQPSSGTVF------------RSAKV 92
           N  + L  +     A++G NG GKST++K++ G  QP SG +              + ++
Sbjct: 20  NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79

Query: 93  RIAVFSQHH--VDGLDLSSNPLLYMMRCFPGVPE-QKLRAHLGSFGVTGNLALQP---MY 146
            I +  QH   V  L ++ N +L +     G+ + ++ RA +        L + P   + 
Sbjct: 80  GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA 139

Query: 147 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QG-GILMVSH 202
            LS G++ RV   K  ++   +++LDEP+  L     + L + L     +G  I+ ++H
Sbjct: 140 DLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITH 198

Length = 501

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 60.1 bits (146), Expect = 4e-11
 Identities = 52/191 (27%), Positives = 76/191 (39%), Gaps = 36/191 (18%)

Query: 45  FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF---RSAKVRIAVFSQHH 101
            KN++  ++    +A+ GP+G GKST+LK +     P SG +      A V +A  S   
Sbjct: 24  LKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPRE 83

Query: 102 ---------------------VDGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSFGV 136
                                V  L++ + PLL       GVP      + R  L    +
Sbjct: 84  VLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER-----GVPREAARARARELLARLNI 138

Query: 137 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL---DAVEALIQGLVLF 193
              L   P  T SGG++ RV  A+       I+LLDEP+  LD      V  LI      
Sbjct: 139 PERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKAR 198

Query: 194 QGGILMVSHDE 204
              ++ + HDE
Sbjct: 199 GAALIGIFHDE 209

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score = 61.7 bits (150), Expect = 5e-11
 Identities = 54/193 (27%), Positives = 78/193 (40%), Gaps = 48/193 (24%)

Query: 29  ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           I+F +  F Y P  P +  NLN  I     I +VGP+G GKST+ KL+     P  G V 
Sbjct: 456 ITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVL 515

Query: 88  RSAKVRIAVFSQHHVDGLDLSSNPLLYMMR----------------------CFPGVPEQ 125
                         VDG+DL+     ++ R                      C PG P +
Sbjct: 516 --------------VDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFE 561

Query: 126 KLRAHLGSFGVTGNLALQPM----------YTLSGGQKSRVAFAKITFKKPHIILLDEPS 175
            +       G    ++  P             LSGGQ+ R+A A+     P I++ DE +
Sbjct: 562 HVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEAT 621

Query: 176 NHLDLDAVEALIQ 188
           + LD ++ EALI 
Sbjct: 622 SALDYES-EALIM 633

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional

 Score = 60.5 bits (147), Expect = 5e-11
 Identities = 59/185 (31%), Positives = 86/185 (46%), Gaps = 35/185 (18%)

Query: 40  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQ 99
           G   +   L+  I     +A+VG +G GKST+L+L+AG   PS+G +        A  ++
Sbjct: 23  GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGT----APLAE 78

Query: 100 HHVDG-LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL---ALQPMYT-------- 147
              D  L      LL         P +K+  ++G  G+ G     ALQ +          
Sbjct: 79  AREDTRLMFQDARLL---------PWKKVIDNVG-LGLKGQWRDAALQALAAVGLADRAN 128

Query: 148 -----LSGGQKSRVAFAKITFKKPHIILLDEPSNHLD-LDAVE--ALIQGLVLFQG-GIL 198
                LSGGQK RVA A+    +P ++LLDEP   LD L  +E   LI+ L    G  +L
Sbjct: 129 EWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVL 188

Query: 199 MVSHD 203
           +V+HD
Sbjct: 189 LVTHD 193

Length = 257

>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional

 Score = 59.6 bits (144), Expect = 6e-11
 Identities = 53/190 (27%), Positives = 85/190 (44%), Gaps = 30/190 (15%)

Query: 35  SFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF---RSAK 91
            F Y   P+L + ++F +     + + G NG GK+T+LKLIAG L P  G +    +S K
Sbjct: 8   DFDYHDQPLL-QQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIK 66

Query: 92  VRIAVFSQH-----HVDGLDLSSNPLLYMMR-CFPGVPEQKLRAHLGSFGVT-------- 137
             +  + +      H  G+    NP L +   C        +    G+ G+T        
Sbjct: 67  KDLCTYQKQLCFVGHRSGI----NPYLTLRENCL-----YDIHFSPGAVGITELCRLFSL 117

Query: 138 GNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQ--- 194
            +L   P   LS GQK +VA  ++   K  + LLDEP   LD  ++  +I  +   +   
Sbjct: 118 EHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKG 177

Query: 195 GGILMVSHDE 204
           G +L+ SH +
Sbjct: 178 GAVLLTSHQD 187

Length = 200

>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

 Score = 61.3 bits (149), Expect = 6e-11
 Identities = 51/193 (26%), Positives = 92/193 (47%), Gaps = 14/193 (7%)

Query: 28  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-SGTV 86
            I F +     P G +L ++L+F +   + + + GPNG GKS++ +++ GEL P   G +
Sbjct: 451 GIKFENIPLVTPNGDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRIL-GELWPVYGGRL 509

Query: 87  FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP----GVPEQKLRAHLGSFGVTGNL-- 140
            + AK ++    Q     L    + ++Y          G+ ++ L   L +  +T  L  
Sbjct: 510 TKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER 569

Query: 141 -----ALQP-MYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQ 194
                A+Q  M  LSGG+K R+A A++ + KP   +LDE ++ + +D    + +    F 
Sbjct: 570 EGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFG 629

Query: 195 GGILMVSHDEHLI 207
             +  VSH + L 
Sbjct: 630 ITLFSVSHRKSLW 642

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 59.9 bits (146), Expect = 7e-11
 Identities = 48/181 (26%), Positives = 70/181 (38%), Gaps = 54/181 (29%)

Query: 61  VGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPL--LYMMRC 118
           VGPNG GKST+L  +AG L P SG++                 G  L +     L   R 
Sbjct: 28  VGPNGAGKSTLLARMAG-LLPGSGSI--------------QFAGQPLEAWSAAELARHRA 72

Query: 119 F----------------------PGVPEQKLRAHL----GSFGVTGNLALQPMYTLSGGQ 152
           +                           + + + L     + G+   L  + +  LSGG+
Sbjct: 73  YLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLG-RSVNQLSGGE 131

Query: 153 KSRVAFAKITFK-----KPH--IILLDEPSNHLDLDAVEALIQGLVLF--QGG-ILMVSH 202
             RV  A +  +      P   ++LLDEP N LD+    AL + L     QG  ++M SH
Sbjct: 132 WQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSH 191

Query: 203 D 203
           D
Sbjct: 192 D 192

Length = 248

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 60.0 bits (146), Expect = 7e-11
 Identities = 50/191 (26%), Positives = 78/191 (40%), Gaps = 32/191 (16%)

Query: 28  IISFSDAS--FGYPGGPI---LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS 82
           +IS S+A+  F + G P+       L+  I     + ++G NG GKST+L  IAG+L+P+
Sbjct: 1   MISLSNATKTF-FKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT 59

Query: 83  SGTVFRSAKVRIAVFSQHH------------VDG----LDLSSNPLLYMMRCFP-GVPEQ 125
           SG +     V +   S               + G    L +  N  L   R    G+   
Sbjct: 60  SGQIL-IDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSA 118

Query: 126 KLRAHLGSF--GVTG------NLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH 177
                  SF   +        N     +  LSGGQ+  ++    T   P I+LLDE +  
Sbjct: 119 LNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAA 178

Query: 178 LDLDAVEALIQ 188
           LD    E +++
Sbjct: 179 LDPKTAEFVME 189

Length = 263

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 60.0 bits (146), Expect = 7e-11
 Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 31/225 (13%)

Query: 24  PGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS 83
             P I+     S  + GG     +L+F +D      ++GPNG GK+T++ +I G+ +P  
Sbjct: 1   MNPIILYLDGVSVSF-GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQE 59

Query: 84  GTVF--------RSAKVRIA------------VFSQHHV-DGLDLSSN--PLLYMMRCFP 120
           G V         +  + RIA            VF    V + L+L+ N    ++      
Sbjct: 60  GEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFAR 119

Query: 121 GVPEQKLRAHLGSFGVTGNLALQ--PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 178
              E++ R         G    +      LS GQK  +    +  + P ++LLDEP   +
Sbjct: 120 LRAEERRRID-ELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178

Query: 179 DLDAVEALIQGLVLFQGG---ILMVSHDEHLISGSVEELWVVSEG 220
             DA       L+    G   IL+V HD   +    +++ V+ EG
Sbjct: 179 T-DAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEG 222

Length = 249

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 59.5 bits (145), Expect = 7e-11
 Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 13/169 (7%)

Query: 46  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF---------RSAKVRIAV 96
            +++  +        +GPNG GK+T +K+I G ++P SG +            A  RI  
Sbjct: 17  DDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGA 76

Query: 97  FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV 156
             +      +L++   L ++    G+ ++++   L   G+  + A + +   S G K R+
Sbjct: 77  LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGL-KDSAKKKVKGFSLGMKQRL 135

Query: 157 AFAKITFKKPHIILLDEPSNHLDLDAV---EALIQGLVLFQGGILMVSH 202
             A      P +++LDEP+N LD D +     LI  L      +L+ SH
Sbjct: 136 GIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSH 184

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional

 Score = 59.6 bits (144), Expect = 1e-10
 Identities = 51/164 (31%), Positives = 79/164 (48%), Gaps = 32/164 (19%)

Query: 58  IAMVGPNGIGKSTILK----LIAGELQPSS------GTVFRSAK----VRIA------VF 97
           +A++GP+G GKST+L+    LI G+    S       TV R  +    +R +      +F
Sbjct: 33  VALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIF 92

Query: 98  SQHH-VDGLDLSSNPLLYMMRCFP--------GVPEQKLRAH--LGSFGVTGNLALQPMY 146
            Q + V+ L +  N L+  +   P           EQK RA   L   G+  + A Q + 
Sbjct: 93  QQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMV-HFAHQRVS 151

Query: 147 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL 190
           TLSGGQ+ RVA A+   ++  +IL DEP   LD ++   ++  L
Sbjct: 152 TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTL 195

Length = 262

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 59.9 bits (146), Expect = 2e-10
 Identities = 60/215 (27%), Positives = 94/215 (43%), Gaps = 46/215 (21%)

Query: 39  PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFS 98
           P G  L   LNF +    RIA+VGP+G GK+++L  + G L P  G    S K+      
Sbjct: 360 PDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQG----SLKINGIELR 414

Query: 99  QHHVDGLDLSS----------NPLLY---------MMRCFPGVPEQKLRAHLGSFGVTGN 139
           +     LD  S          NP L          +    P   +++L+  L +  V+  
Sbjct: 415 E-----LDPESWRKHLSWVGQNPQLPHGTLRDNVLLGN--PDASDEQLQQALENAWVSEF 467

Query: 140 LALQP----------MYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQG 189
           L L P             LS GQ  R+A A+   +   ++LLDEP+  LD  + + ++Q 
Sbjct: 468 LPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQA 527

Query: 190 L--VLFQGGILMVSHD-EHLISGSVEELWVVSEGK 221
           L     +   LMV+H  E L     +++WV+ +G+
Sbjct: 528 LNAASRRQTTLMVTHQLEDLA--QWDQIWVMQDGQ 560

Length = 588

>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 58.9 bits (142), Expect = 2e-10
 Identities = 64/221 (28%), Positives = 100/221 (45%), Gaps = 35/221 (15%)

Query: 28  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           +++ SD  F Y   P+L K LN    L     +VG NG GKST+   ++G L+P  G V 
Sbjct: 1   MLATSDLWFRYQDEPVL-KGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVL 59

Query: 88  RSAKV-------------RIAVFSQ---HHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHL 131
              K              ++A   Q     +   D+ S+ + + +R   GVPE ++    
Sbjct: 60  WQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSD-IAFSLRNL-GVPEAEITRR- 116

Query: 132 GSFGVTGNLAL--------QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---L 180
               V   L L        QP+  LS GQK RVA A     +   +LLDEP+  LD    
Sbjct: 117 ----VDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGR 172

Query: 181 DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGK 221
             + A+I+ +V     +++ SHD  LI    + ++V+ +G+
Sbjct: 173 TQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQ 213

Length = 271

>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 58.8 bits (143), Expect = 2e-10
 Identities = 54/239 (22%), Positives = 99/239 (41%), Gaps = 55/239 (23%)

Query: 27  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86
           P++S S     + GG +   N+N  +     ++++GPNG GK+T+   + G  +P+ GT+
Sbjct: 4   PLLSVSGLMMRF-GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI 62

Query: 87  FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP--------EQKLRA---HLGSFG 135
                    +    H++GL       + ++R F  V         E  L A    L + G
Sbjct: 63  ---------LLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKT-G 112

Query: 136 VTGNLALQPMY-----------------------------TLSGGQKSRVAFAKITFKKP 166
           +   L   P +                              L+ GQ+ R+  A+    +P
Sbjct: 113 LFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQP 172

Query: 167 HIILLDEPS---NHLDLDAVEALIQGLV-LFQGGILMVSHDEHLISGSVEELWVVSEGK 221
            I++LDEP+   N  +   ++ LI  L       +L++ HD  L+ G  + ++VV++G 
Sbjct: 173 EILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGT 231

Length = 255

>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 30/171 (17%)

Query: 60  MVGPNGIGKSTILKLIAGELQPSSG------------TVFRSAKVRIAVFSQHHVDGLDL 107
           +VGPNGIGKST LK++AG+L+P+ G              FR ++++   F++     + +
Sbjct: 31  LVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQN-YFTKLLEGDVKV 89

Query: 108 SSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN-------LALQPMY-----TLSGGQKSR 155
              P  Y+    P   + K+   L      G        L L+ +       LSGG+  R
Sbjct: 90  IVKP-QYVDL-IPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQR 147

Query: 156 VAFAKITFKKPHIILLDEPSNHLDLD---AVEALIQGLVLFQGGILMVSHD 203
           VA A    +       DEPS++LD+        LI+ L      +L+V HD
Sbjct: 148 VAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHD 198

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 58.6 bits (142), Expect = 2e-10
 Identities = 57/237 (24%), Positives = 100/237 (42%), Gaps = 48/237 (20%)

Query: 27  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86
           P++S S  S  Y G     ++++F +     + +VG +G GK+T+LK I+G L P +GTV
Sbjct: 5   PLLSVSGLSKLY-GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTV 63

Query: 87  FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVT--GNLALQP 144
               +           D   +S      ++R   G   Q  R  L    V+  GN+  + 
Sbjct: 64  TYRMR------DGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGL-RMQVSAGGNIGERL 116

Query: 145 M--------------------------------YTLSGGQKSRVAFAKITFKKPHIILLD 172
           M                                 T SGG + R+  A+    +P ++ +D
Sbjct: 117 MAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMD 176

Query: 173 EPSNHLDLDAVEA----LIQGLVL-FQGGILMVSHDEHLISGSVEELWVVSEGKATP 224
           EP+  LD+ +V+A    L++GLV      +++V+HD  +     + L V+ +G+   
Sbjct: 177 EPTGGLDV-SVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232

Length = 258

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 58.6 bits (142), Expect = 3e-10
 Identities = 53/183 (28%), Positives = 78/183 (42%), Gaps = 40/183 (21%)

Query: 29  ISFSDASFGYPGGPILFKNLNFGIDLD----SRIAMVGPNGIGKSTILKLIAGELQPSSG 84
           I+  + S+ Y  G        F ++L     S  A +G  G GKSTI++L+ G   P+ G
Sbjct: 3   INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62

Query: 85  TVFRSAKVRIAVFSQH--------HVDGL----------------DLSSNPLLYMMRCFP 120
           +V R     I   S++         V GL                D++  P  +      
Sbjct: 63  SV-RVDDTLITSTSKNKDIKQIRKKV-GLVFQFPESQLFEETVLKDVAFGPQNF------ 114

Query: 121 GVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 176
           GV     E   R  L   G++ +L  +  + LSGGQ  RVA A I   +P I++LDEP+ 
Sbjct: 115 GVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTA 174

Query: 177 HLD 179
            LD
Sbjct: 175 GLD 177

Length = 280

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score = 58.1 bits (141), Expect = 3e-10
 Identities = 51/170 (30%), Positives = 74/170 (43%), Gaps = 23/170 (13%)

Query: 29  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 88
           I   + S  +     L  +++  I     +A++GP+G GK+T+L+LIAG  +P SGT+  
Sbjct: 3   IEVRNVSKRFGDFVAL-DDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILF 61

Query: 89  SAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGV-------------PEQKLRAH----L 131
             +    V  Q    G       L   M  F  V             PE ++RA     L
Sbjct: 62  GGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELL 121

Query: 132 GSFGVTGNLALQPMY--TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
               +     L   Y   LSGGQ+ RVA A+    +P ++LLDEP   LD
Sbjct: 122 KLVQLDW---LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALD 168

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional

 Score = 57.5 bits (139), Expect = 6e-10
 Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 20/154 (12%)

Query: 40  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF----------RS 89
           G   +F N++  +      A++GP+GIGK+T+L+LI G++ P  G +           RS
Sbjct: 18  GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRS 77

Query: 90  ----AKVRIAVFSQHHVDGLDLSS-NPLLYMMRCFPGVPEQKLRA----HLGSFGVTGNL 140
                + R+++  Q      D++  + + Y +R    +P   L +     L + G+ G  
Sbjct: 78  RLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAA 137

Query: 141 ALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP 174
            L P   LSGG   R A A+    +P +I+ DEP
Sbjct: 138 KLMPS-ELSGGMARRAALARAIALEPDLIMFDEP 170

Length = 269

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 57.2 bits (139), Expect = 6e-10
 Identities = 41/168 (24%), Positives = 66/168 (39%), Gaps = 36/168 (21%)

Query: 45  FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG 104
              ++F I     + +VG +G GKST+ +LI G  +P+SG +    K           D 
Sbjct: 29  VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGK-----------DI 77

Query: 105 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK 164
             LS                +++   L   G+      +  + LSGGQ+ R+  A+    
Sbjct: 78  TKLSKEER-----------RERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALAL 126

Query: 165 KPHIILLDEPSNHLDLDAVEALIQGLVL---------FQGGILMVSHD 203
            P +I+ DEP + LD       +Q  +L              L +SHD
Sbjct: 127 NPKLIVADEPVSALD-----VSVQAQILNLLKDLQEELGLTYLFISHD 169

Length = 268

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 57.4 bits (139), Expect = 7e-10
 Identities = 57/214 (26%), Positives = 97/214 (45%), Gaps = 53/214 (24%)

Query: 46  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL 105
            N+N  I+    + ++G  G GKST+++ + G L+P+SG +               +DG+
Sbjct: 24  DNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKII--------------IDGV 69

Query: 106 DLSSNPL-LYMMRCFPGV----PEQKLRAHLG----SFGVTGNLAL----------QPM- 145
           D++   + L  +R   G+    PE +L         +FG   NL L          + M 
Sbjct: 70  DITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPI-NLGLSEEEIENRVKRAMN 128

Query: 146 --------------YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDAVEALIQ 188
                         + LSGGQK RVA A +   +P I++LDEP+  LD    D +   I+
Sbjct: 129 IVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIK 188

Query: 189 GL-VLFQGGILMVSHDEHLISGSVEELWVVSEGK 221
            L   +   I++VSH    ++   + + V+++GK
Sbjct: 189 ELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGK 222

Length = 287

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 57.1 bits (138), Expect = 7e-10
 Identities = 54/217 (24%), Positives = 90/217 (41%), Gaps = 48/217 (22%)

Query: 26  PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 85
            P++  S  S  Y GG    ++++F +     + +VG +G GKST+L  +AG L P  GT
Sbjct: 1   KPLLQVSGLSKSY-GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGT 59

Query: 86  VFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVT--GNLALQ 143
                     + S   ++   LS      +MR   G   Q  R  L    V+   N+  +
Sbjct: 60  ------ATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGL-RMRVSAGANIGER 112

Query: 144 PM--------------------------------YTLSGGQKSRVAFAKITFKKPHIILL 171
            M                                   SGG + R+  A+    +P ++ +
Sbjct: 113 LMAIGARHYGNIRATAQDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFM 172

Query: 172 DEPSNHLDLDAVEA----LIQGLVLFQG-GILMVSHD 203
           DEP+  LD+ +V+A    L++GLV   G  +++V+HD
Sbjct: 173 DEPTGGLDV-SVQARLLDLLRGLVRDLGLAVIIVTHD 208

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score = 57.4 bits (139), Expect = 9e-10
 Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 50/164 (30%)

Query: 47  NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 106
           NLN  I   + + ++GP+G GK+T+L+L+AG  +P+ G +F              +DG D
Sbjct: 24  NLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIF--------------IDGED 69

Query: 107 LSSNPLLYMMRC--------FP---------------GVPEQKLRAHLGSFGVTGNLAL- 142
           ++   +     C        FP               GVP+++ +       V   L L 
Sbjct: 70  VTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQR-----VKEALELV 124

Query: 143 -----QPMYT--LSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
                +  Y   +SGGQ+ RVA A+    KP ++L DEP ++LD
Sbjct: 125 DLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLD 168

Length = 351

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 57.6 bits (139), Expect = 1e-09
 Identities = 32/116 (27%), Positives = 60/116 (51%)

Query: 124 EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV 183
           E +  + L     T  + ++   T SGG + R+A A+  F +P ++LLDEP+NHLDL AV
Sbjct: 321 EARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAV 380

Query: 184 EALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQSR 239
             L   L+ +    ++VSH    ++  V ++  +   K   + G +  +++  + +
Sbjct: 381 LWLETYLLKWPKTFIVVSHAREFLNTVVTDILHLHGQKLVTYKGDYDTFERTREEQ 436

Length = 718

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 56.4 bits (137), Expect = 1e-09
 Identities = 53/232 (22%), Positives = 100/232 (43%), Gaps = 52/232 (22%)

Query: 28  IISFSDASFGYPGGP---ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 84
           +I   + S  +          K+++  +       ++G +G GKST+++ I G  +P+SG
Sbjct: 1   MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSG 60

Query: 85  TVF--------------RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP----GVPEQK 126
           +V               R A+ RI +  QH     +L S+  ++     P    GVP+ +
Sbjct: 61  SVLVDGTDLTLLSGKELRKARRRIGMIFQH----FNLLSSRTVFENVALPLEIAGVPKAE 116

Query: 127 LRAHLGSFGVTGNLALQPMY--------TLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 178
           +        V   L L  +          LSGGQK RV  A+     P ++L DE ++ L
Sbjct: 117 IEER-----VLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSAL 171

Query: 179 D---LDAVEALIQ------GLVLFQGGILMVSHDEHLISGSVEELWVVSEGK 221
           D     ++ AL++      GL      I++++H+  ++    + + V+ +G+
Sbjct: 172 DPETTQSILALLRDINRELGLT-----IVLITHEMEVVKRICDRVAVMEKGE 218

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 55.1 bits (132), Expect = 1e-09
 Identities = 34/150 (22%), Positives = 57/150 (38%), Gaps = 34/150 (22%)

Query: 58  IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR 117
           I +VGP G GK+T+ + +A EL P  G V               +DG D+    L  ++ 
Sbjct: 5   ILIVGPPGSGKTTLARALARELGPPGGGVIY-------------IDGEDILEEVLDQLL- 50

Query: 118 CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH 177
                                 +      + SG  + R+A A     KP +++LDE ++ 
Sbjct: 51  --------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSL 90

Query: 178 LDLDAVEALIQGLVLFQGGILMVSHDEHLI 207
           LD +    L+    L    +L    +  +I
Sbjct: 91  LDAEQEALLLLLEELRLLLLLKSEKNLTVI 120

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 57.1 bits (138), Expect = 1e-09
 Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 20/151 (13%)

Query: 58  IAMVGPNGIGKSTILKLIAGELQPSSGTVF--------RSAKVR--IAVFSQHHVDGLDL 107
           +  +GPNG GKST +K+I G L P SG+V            +V+  I    +H+   LD+
Sbjct: 31  VGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDM 90

Query: 108 SSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQP-----MYTLSGGQKSRVAFAKIT 162
                L  +    G+  Q L+  +    +   + L+P     +  LS G + RV  A+  
Sbjct: 91  YVREYLQFIAGIYGMKGQLLKQRVEE--MIELVGLRPEQHKKIGQLSKGYRQRVGLAQAL 148

Query: 163 FKKPHIILLDEPSNHLD---LDAVEALIQGL 190
              P +++LDEP+  LD   L  +  +I+ +
Sbjct: 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNI 179

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 59/212 (27%), Positives = 91/212 (42%), Gaps = 44/212 (20%)

Query: 49  NFGIDLDSRI------AMVGPNGIGKSTILKLIAGELQPSSG-------TVFRSAKV--- 92
           +F +D D  +      A+ G +G GK+T+++LIAG  +P  G       T+F S K    
Sbjct: 11  DFSLDADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFL 70

Query: 93  -----RIA-VFSQ-----HHVDGLDLSSNPLLY-MMRCFP---GVPEQKLRAHLGSFGVT 137
                RI  VF +     H    L +  N L Y M R  P    +  +++   LG     
Sbjct: 71  PPEKRRIGYVFQEARLFPH----LSVRGN-LRYGMKRARPSERRISFERVIELLG----I 121

Query: 138 GNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL----VLF 193
           G+L  +    LSGG+K RVA  +     P ++L+DEP   LD      ++  L      F
Sbjct: 122 GHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF 181

Query: 194 QGGILMVSHDEHLISGSVEELWVVSEGKATPF 225
              IL VSH    +    + + V+ +G+    
Sbjct: 182 GIPILYVSHSLQEVLRLADRVVVLEDGRVAAA 213

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 26/61 (42%), Positives = 41/61 (67%)

Query: 143 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSH 202
           +P+   SGG + R+  A+    +  ++LLDEP+NHLDLDAV  L + L  +QG ++++SH
Sbjct: 145 RPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISH 204

Query: 203 D 203
           D
Sbjct: 205 D 205

Length = 638

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 54/191 (28%), Positives = 84/191 (43%), Gaps = 29/191 (15%)

Query: 62  GPNGIGKSTILKLIAGELQPSSGTV------------FRSAKVRIAVFSQHH--VDGLDL 107
           GPNG GK+T   +I G ++P SG +             + A++ I    Q       L +
Sbjct: 37  GPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTV 96

Query: 108 SSNPL--LYMMRCFPGVPEQKLRAH--LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF 163
             N +  L +        E+K      L  F +T +L     Y+LSGG++ RV  A+   
Sbjct: 97  EDNIMAVLEIREKDLKKAERKEELDALLEEFHIT-HLRDSKAYSLSGGERRRVEIARALA 155

Query: 164 KKPHIILLDEPSNHLDLDAVEALIQGLVLF---QG-GILMVSH--DEHLISGSVEELWVV 217
             P  ILLDEP   +D  AV   IQ ++     +G G+L+  H   E L     +  +++
Sbjct: 156 ANPKFILLDEPFAGVDPIAV-IDIQRIIKHLKDRGIGVLITDHNVRETL--DICDRAYII 212

Query: 218 SEGKATPFHGT 228
           S+GK     G+
Sbjct: 213 SDGKVL-AEGS 222

Length = 243

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score = 55.5 bits (134), Expect = 3e-09
 Identities = 55/189 (29%), Positives = 86/189 (45%), Gaps = 42/189 (22%)

Query: 51  GIDLDSR----IAMVGPNGIGKSTILKLIAGELQPSSGTV------------FRSAKVRI 94
           GIDL+ +    +A++GP+G GK+T+L+ I    QP +GT+                K  I
Sbjct: 21  GIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80

Query: 95  AVFSQH------------HVDGLD-LSSNPLLYMMRCFPGVP----EQKLRAHLGSFGVT 137
               QH            H   L+ +   P++       G P      + R  L   G+ 
Sbjct: 81  RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVI-----VKGEPKEEATARARELLAKVGLA 135

Query: 138 GNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV-EAL--IQGLVLFQ 194
           G     P   LSGGQ+ RVA A+    +P +IL DEP++ LD + V E L  I+ L   +
Sbjct: 136 GKETSYPR-RLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEK 194

Query: 195 GGILMVSHD 203
             +++V+H+
Sbjct: 195 RTMVIVTHE 203

Length = 250

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 52/181 (28%), Positives = 77/181 (42%), Gaps = 36/181 (19%)

Query: 29  ISFSDASFGY-PGGP---ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 84
           I+F      Y    P       ++N  I   S +A++G  G GKST+L+ + G LQP+SG
Sbjct: 3   ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62

Query: 85  TVFRSAKVRIAVFSQHHVDGL----------------------DLSSNPLLYMMRCFPGV 122
           TV    +V  A      +  L                      D+   P+ +      GV
Sbjct: 63  TVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF------GV 116

Query: 123 PE----QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 178
            E    QK R  +   G+   L  +  + LSGGQ  RVA A +   +P +++LDEP+  L
Sbjct: 117 SEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGL 176

Query: 179 D 179
           D
Sbjct: 177 D 177

Length = 290

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score = 54.5 bits (132), Expect = 3e-09
 Identities = 41/163 (25%), Positives = 67/163 (41%), Gaps = 35/163 (21%)

Query: 29  ISFSDASFGYPGGP-----ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS- 82
           +SF + +      P      L KN++         A++GP+G GKST+L  +AG      
Sbjct: 4   LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG 63

Query: 83  -SGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA 141
            SG V               ++G  L       ++  +  VP+  +     +  V   L 
Sbjct: 64  VSGEVL--------------INGRPLDKRSFRKII-GY--VPQDDI--LHPTLTVRETL- 103

Query: 142 LQPMYT-----LSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
              M+      LSGG++ RV+ A      P ++ LDEP++ LD
Sbjct: 104 ---MFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLD 143

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

 Score = 56.0 bits (135), Expect = 4e-09
 Identities = 60/252 (23%), Positives = 95/252 (37%), Gaps = 53/252 (21%)

Query: 3   HVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPG-----GPILFKNLNFGIDLDSR 57
            + ++   P YK +FP P   P    +   +  F Y       GPI     N  I     
Sbjct: 298 KIAKLELAP-YKADFPRPQAFPDWKTLELRNVRFAYQDNAFHVGPI-----NLTIKRGEL 351

Query: 58  IAMVGPNGIGKSTILKLIAGELQPSSGTVF------------RSAKVRIAVFSQHHVD-- 103
           + ++G NG GKST+  L+ G  QP SG +                K+  AVFS +H+   
Sbjct: 352 VFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQ 411

Query: 104 --GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ----PMYTLSGGQKSRVA 157
             G +  ++P             Q +   L    +    +L         LS GQK R+A
Sbjct: 412 LLGPEGKASP-------------QLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLA 458

Query: 158 FAKITFKKPHIILLDEPSNHLDLDAV------EALIQGLVLFQGGILMVSHDEHLISGSV 211
                 ++  I++LDE +   D D        + L+  L      I  +SHD+H      
Sbjct: 459 LLLALLEERDILVLDEWA--ADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYF-IHA 515

Query: 212 EELWVVSEGKAT 223
           + L  +  G+ +
Sbjct: 516 DRLLEMRNGQLS 527

Length = 546

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 54.9 bits (133), Expect = 4e-09
 Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 30/158 (18%)

Query: 45  FK---NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF-------RSAKVRI 94
           FK   +L+  +D      ++GPNG GK+T++ +I G+ +P  G+V           + +I
Sbjct: 15  FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQI 74

Query: 95  A------------VFSQHHV-DGLDLSSN---PLLYMMRCFPGVPEQKLRAH--LGSFGV 136
           A            VF    V + L+L+      +   +  F    E+K R    L + G+
Sbjct: 75  ARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLF-FRLSAEEKDRIEEVLETIGL 133

Query: 137 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP 174
               A +    LS GQK  +    +  + P ++LLDEP
Sbjct: 134 AD-EADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEP 170

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 55.8 bits (134), Expect = 4e-09
 Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 27/188 (14%)

Query: 40  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQ 99
           G   +  +L+  I+    +A++G +G GK+T+L+ IAG ++ +  T   +   R    + 
Sbjct: 16  GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAP 75

Query: 100 HHVDGLDLSSNPLLYMMRCFP----------GVPEQKLRAHLGSFGVTGNLALQPM---- 145
            H  GL L    L      FP          G+  QK+     +  V   L L  +    
Sbjct: 76  PHKRGLAL----LFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAA 131

Query: 146 ----YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV-----LFQGG 196
                 LSGG + R+A A+    +P ++LLDEP + LD +    + + +      L +  
Sbjct: 132 AHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELT 191

Query: 197 ILMVSHDE 204
           IL V+HD+
Sbjct: 192 ILCVTHDQ 199

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 54.4 bits (132), Expect = 4e-09
 Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 29 ISFSDASFGYPGGPI----LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 84
          IS  DASF +  G        K++N  +     +A+VGP G GKS++L  + GEL+  SG
Sbjct: 1  ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60

Query: 85 TVFRSAKVRIAVFSQ 99
          +V       IA  SQ
Sbjct: 61 SVSVPG--SIAYVSQ 73

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 40/171 (23%), Positives = 79/171 (46%), Gaps = 21/171 (12%)

Query: 28  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV- 86
           +I+  + S  Y    +L  +++  I      +++GPNG GKST+L +++  L+  SG + 
Sbjct: 1   MITIENVSKSYGTKVVL-DDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT 59

Query: 87  FRSAKV----------RIAVFSQHHVDGLDLSSNPLLYMMRCFP---GVP----EQKLRA 129
               ++          ++++  Q +     L+   L+   R FP   G       + +  
Sbjct: 60  IDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGR-FPYSQGRLTKEDRRIINE 118

Query: 130 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 180
            +    +  +L+ + +  LSGGQ+ R   A +  +    +LLDEP N+LD+
Sbjct: 119 AIEYLHLE-DLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDM 168

Length = 252

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score = 54.9 bits (133), Expect = 4e-09
 Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 28/106 (26%)

Query: 29  ISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86
           I F + SF YP  P   + K L+  I     +A+VG +G GKST++ L+     P+SG +
Sbjct: 1   IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60

Query: 87  FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG 132
                          +DG+D+    L            + LR+ +G
Sbjct: 61  L--------------LDGVDIRDLNL------------RWLRSQIG 80

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 54.4 bits (131), Expect = 6e-09
 Identities = 54/200 (27%), Positives = 93/200 (46%), Gaps = 26/200 (13%)

Query: 46  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV-------------FRSAKV 92
           K ++F +     +A++G NG GKST+ K++AG ++P+SG +             FRS ++
Sbjct: 30  KPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRI 89

Query: 93  RIAVFSQHHVDGLDLSSN-------PLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPM 145
           R+ +F Q     L+           PL       P    +++   L   G+  + A    
Sbjct: 90  RM-IF-QDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYP 147

Query: 146 YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQG--GILMVSHD 203
           + L+ GQK RVA A+    +P II+ DE    LD+     LI  ++  Q   GI  +   
Sbjct: 148 HMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVT 207

Query: 204 EHL--ISGSVEELWVVSEGK 221
           +H+  I    +++ V+ EG+
Sbjct: 208 QHIGMIKHISDQVLVMHEGE 227

Length = 267

>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 54.4 bits (130), Expect = 7e-09
 Identities = 57/226 (25%), Positives = 101/226 (44%), Gaps = 39/226 (17%)

Query: 28  IISFSDASFGY-PGGPILFKNLNFGIDLD----SRIAMVGPNGIGKSTILKLIAGELQPS 82
           +I F   ++ Y P  P   + L F IDL+    S  A++G  G GKST+L+ + G LQP+
Sbjct: 1   MIKFEKVNYTYQPNSPFASRAL-FDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT 59

Query: 83  SGTV---------------FRSAKVRIAVFSQHHVDGL-------DLSSNPLLYMMRCFP 120
            G V                +  + ++ V  Q     L       D++  P  + +    
Sbjct: 60  EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIP--K 117

Query: 121 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 180
              E+     L   G+      +  + LSGGQ  RVA A I   +P +++LDEP+  LD 
Sbjct: 118 EKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLD- 176

Query: 181 DAVEALIQGLVLFQG------GILMVSHDEHLISGSVEELWVVSEG 220
              +A I+ + LF+        +++V+H    ++   + ++++ +G
Sbjct: 177 --PKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKG 220

Length = 288

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score = 55.0 bits (132), Expect = 1e-08
 Identities = 59/244 (24%), Positives = 105/244 (43%), Gaps = 46/244 (18%)

Query: 18  PTPDDRPGPPIISFSDASFGYPG---GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKL 74
             P  +PG P IS  +  F +      P L  ++N  I + S +A+VG  G GK++++  
Sbjct: 604 QNPPLQPGAPAISIKNGYFSWDSKTSKPTL-SDINLEIPVGSLVAIVGGTGEGKTSLISA 662

Query: 75  IAGELQP--SSGTVFR-------------SAKVRIAVF------SQHHVDGLDLSSNPLL 113
           + GEL    +S  V R             +A VR  +       S+ +   +D+++  L 
Sbjct: 663 MLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTA--LQ 720

Query: 114 YMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 173
           + +   PG    +    +G  GV           +SGGQK RV+ A+  +    I + D+
Sbjct: 721 HDLDLLPG----RDLTEIGERGVN----------ISGGQKQRVSMARAVYSNSDIYIFDD 766

Query: 174 PSNHLDLDAVEALIQGLVL--FQGGI-LMVSHDEHLISGSVEELWVVSEGKATPFHGTFH 230
           P + LD      +    +    +G   ++V++  H +   ++ + +VSEG      GTF 
Sbjct: 767 PLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLP-LMDRIILVSEGMIKE-EGTFA 824

Query: 231 DYKK 234
           +  K
Sbjct: 825 ELSK 828

Length = 1495

>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

 Score = 53.6 bits (129), Expect = 1e-08
 Identities = 58/218 (26%), Positives = 95/218 (43%), Gaps = 41/218 (18%)

Query: 46  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV-------------FRSAKV 92
           K L+F +     +A++G NG GKST+ K++AG ++P+SG +             +RS ++
Sbjct: 30  KPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRI 89

Query: 93  RIAVFS---------QHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ 143
           R+ +F          Q     LD    PL       P   E+++   L   G+  + A  
Sbjct: 90  RM-IFQDPSTSLNPRQRISQILDF---PLRLNTDLEPEQREKQIIETLRQVGLLPDHASY 145

Query: 144 PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQG--GILMVS 201
             + L+ GQK R+  A+    +P +I+ DE    LD+     LI  ++  Q   GI  + 
Sbjct: 146 YPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIY 205

Query: 202 HDEHL-----IS--------GSVEELWVVSEGKATPFH 226
             +HL     IS        G V E    ++  A+P H
Sbjct: 206 VTQHLGMMKHISDQVLVMHQGEVVERGSTADVLASPLH 243

Length = 267

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 53/209 (25%), Positives = 85/209 (40%), Gaps = 42/209 (20%)

Query: 49  NFGIDLDSRI------AMVGPNGIGKSTILKLIAGELQPSSG-------TVFRSAK---- 91
           NF +D +  +      A+ GP+G GK++++ +IAG  +P  G        +  + K    
Sbjct: 12  NFALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFL 71

Query: 92  ----VRIA-VFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPM 145
                RI  VF    +     +  N L Y M        + +RA      +   L ++ +
Sbjct: 72  PPEKRRIGYVFQDARLFPHYTVRGN-LRYGM-------WKSMRAQFDQ--LVALLGIEHL 121

Query: 146 -----YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL-VLFQG---G 196
                 TLSGG+K RVA  +     P ++L+DEP   LDL     ++  L  L       
Sbjct: 122 LDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIP 181

Query: 197 ILMVSHDEHLISGSVEELWVVSEGKATPF 225
           IL VSH    +    + + V+  GK    
Sbjct: 182 ILYVSHSLDEVLRLADRVVVLENGKVKAS 210

Length = 352

>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 53.7 bits (129), Expect = 1e-08
 Identities = 60/234 (25%), Positives = 99/234 (42%), Gaps = 52/234 (22%)

Query: 43  ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL----QPSSGTV------------ 86
            + ++L+  I+     A++G NG GKST+LK +AG+L     P    V            
Sbjct: 15  AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLA 74

Query: 87  ----FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH---------LGS 133
                R A++R AV  Q        S+  ++ ++  +P         H         L  
Sbjct: 75  AIDAPRLARLR-AVLPQAAQPAFAFSAREIV-LLGRYPHARRAGALTHRDGEIAWQALAL 132

Query: 134 FGVTGNLALQPMYTLSGGQKSRVAFAKI---------TFKKPHIILLDEPSNHLD----- 179
            G T  L  + + TLSGG+ +RV FA++           + P  +LLDEP+  LD     
Sbjct: 133 AGATA-LVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQH 191

Query: 180 --LDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD 231
             LD V  L +    +  G+L + HD +L +   + + ++++G     HG   D
Sbjct: 192 RLLDTVRRLARD---WNLGVLAIVHDPNLAARHADRIAMLADGAIVA-HGAPAD 241

Length = 272

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 42/166 (25%)

Query: 47  NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 106
           N++F +       ++GPNG GK+T  ++I G L+P+ G +                +G  
Sbjct: 20  NISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEI--------------TWNGGP 65

Query: 107 LSSNP----------------------LLYMMRCFPGVPEQKLRAHLG----SFGVTGNL 140
           LS                         L Y+     G+P+ +++  L        + G  
Sbjct: 66  LSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAE-LKGMPKAEIQKKLQAWLERLEIVGKK 124

Query: 141 ALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 186
             + +  LS G + ++ F      +P +++LDEP + LD   VE L
Sbjct: 125 T-KKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELL 169

Length = 300

>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 40/151 (26%), Positives = 57/151 (37%), Gaps = 52/151 (34%)

Query: 58  IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR 117
           I +VGPNG GK+T +K++AG+L P+                    D  D  +        
Sbjct: 28  IGIVGPNGTGKTTAVKILAGQLIPNGDN-----------------DEWDGIT-------- 62

Query: 118 CFPGVPEQKLRAHLGSFGVTGNLALQPMY-TLSGGQKSRVAFAKITFKKPHIILLDEPSN 176
                                    +P Y  LSGG+  RVA A    +     L DEPS 
Sbjct: 63  ----------------------PVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSA 100

Query: 177 HLD----LDAVEALIQGLVLFQGGILMVSHD 203
           +LD    L+A  A+ +     +   L+V HD
Sbjct: 101 YLDIEQRLNAARAIRRLSEEGKKTALVVEHD 131

The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177

>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 53.1 bits (127), Expect = 2e-08
 Identities = 52/192 (27%), Positives = 77/192 (40%), Gaps = 46/192 (23%)

Query: 28  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           +I   + S+ YP G    +N+N  I     I ++G NG GKST+   + G L+P  G V 
Sbjct: 1   MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60

Query: 88  RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGV----PEQKLRAHLG----SFGVTGN 139
                         V G+D      L  +R   G+    PE +          +FG   N
Sbjct: 61  --------------VSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFG-PEN 105

Query: 140 LALQPM-----------------------YTLSGGQKSRVAFAKITFKKPHIILLDEPSN 176
           L L P+                        TLSGGQ   VA A I   +P  ++ DE ++
Sbjct: 106 LCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTS 165

Query: 177 HLDLDAVEALIQ 188
            LD D+  A+++
Sbjct: 166 MLDPDSGIAVLE 177

Length = 274

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score = 52.5 bits (127), Expect = 2e-08
 Identities = 46/192 (23%), Positives = 79/192 (41%), Gaps = 47/192 (24%)

Query: 29  ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           I F + S  Y P  P + KN++F I    ++ +VG  G GKS++L  +   ++ SSG++ 
Sbjct: 3   IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSI- 61

Query: 88  RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP---------------------EQK 126
                         +DG+D+S   L  +      +P                     +++
Sbjct: 62  -------------LIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEE 108

Query: 127 L-----RAHLGSFGVTGNLALQPMYT-----LSGGQKSRVAFAKITFKKPHIILLDEPSN 176
           L     R  L  F  +    L  +       LS GQ+  +  A+   +K  I++LDE + 
Sbjct: 109 LWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATA 168

Query: 177 HLDLDAVEALIQ 188
            +D    +ALIQ
Sbjct: 169 SVD-PETDALIQ 179

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional

 Score = 53.4 bits (128), Expect = 3e-08
 Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 11/133 (8%)

Query: 47  NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV-FRSAKVRIAVFS--QHHVD 103
           N++F +     + ++G NG GKST+  LIAG   P+ GTV  + +   IA+ S     + 
Sbjct: 42  NISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLT 101

Query: 104 GLDLSSNPLLYMMRCFPGVPEQKLR---AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK 160
           G++      L M     G+ ++K++     +  F   G    QP+ T S G KSR+ FA 
Sbjct: 102 GIENIELKGLMM-----GLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAI 156

Query: 161 ITFKKPHIILLDE 173
                P I+++DE
Sbjct: 157 SVHINPDILVIDE 169

Length = 549

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score = 52.8 bits (127), Expect = 4e-08
 Identities = 57/208 (27%), Positives = 96/208 (46%), Gaps = 38/208 (18%)

Query: 27  PIISFSDASFGYPGGP---ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS 83
            ++   D    YP G     + K ++  I     +A+VG +G GKST++ ++    +P+S
Sbjct: 3   ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTS 62

Query: 84  GTVFRSAKVRIA-----------------VFSQHHV-DGLDLSSN---PLLYMMRCFPGV 122
           GT +R A   +A                 +F ++H+   L  + N   P +Y      G+
Sbjct: 63  GT-YRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVY-----AGL 116

Query: 123 P--EQKLRAH--LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 178
              ++ LRA   L   G+   +  QP   LSGGQ+ RV+ A+       +IL DEP+  L
Sbjct: 117 ERKQRLLRAQELLQRLGLEDRVEYQPS-QLSGGQQQRVSIARALMNGGQVILADEPTGAL 175

Query: 179 DLDAVEALIQGL-VLFQGG--ILMVSHD 203
           D  + E ++  L  L   G  +++V+HD
Sbjct: 176 DSHSGEEVMAILHQLRDRGHTVIIVTHD 203

Length = 648

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score = 53.0 bits (127), Expect = 4e-08
 Identities = 47/218 (21%), Positives = 86/218 (39%), Gaps = 43/218 (19%)

Query: 12  DYKFEFPTPDDRPGPP----IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIG 67
           D  F+   P D P  P     + F   +F +        +++F       +A+VGP G G
Sbjct: 314 DSVFQREEPADAPELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAG 373

Query: 68  KSTILKLIAGELQPSSG----------------------TVFRSAKVRIAVFSQHHVDGL 105
           K+T++ L+     P+ G                      TVF+ A +      ++   G 
Sbjct: 374 KTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGR 433

Query: 106 DLSSNPLLYMMRCFPGVP---EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT 162
           + +++  +Y             ++   +    G  GN        LSGG++ R+A A+  
Sbjct: 434 EGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGN-------RLSGGERQRLAIARAI 486

Query: 163 FKKPHIILLDEPSNHLDL-------DAVEALIQGLVLF 193
            K   I++LDE ++ LD+       +A++AL +    F
Sbjct: 487 LKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTF 524

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 38/165 (23%)

Query: 40  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG-----------------ELQPS 82
           G  ++ K++N  I     +  VGP+G GKST+L++IAG                 ++ P+
Sbjct: 14  GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA 73

Query: 83  S---GTVFRSAKVRIAVFSQHHVD-----GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF 134
               G VF+S     A++    V      GL L+      + +    V E    AHL   
Sbjct: 74  ERGVGMVFQS----YALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHL--- 126

Query: 135 GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
                L  +P   LSGGQ+ RVA  +    +P + LLDEP ++LD
Sbjct: 127 -----LDRKPK-ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165

Length = 369

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 25/77 (32%), Positives = 48/77 (62%), Gaps = 4/77 (5%)

Query: 147 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL--VLFQGGI-LMVSHD 203
           TLSGGQ+ R+A A+  +  P +++LDEP+++LD +   AL   +     +GG  ++++H 
Sbjct: 472 TLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHR 531

Query: 204 EHLISGSVEELWVVSEG 220
              +  SV+++ V+ +G
Sbjct: 532 PSAL-ASVDKILVLQDG 547

Length = 580

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 52.3 bits (126), Expect = 6e-08
 Identities = 48/181 (26%), Positives = 73/181 (40%), Gaps = 46/181 (25%)

Query: 58  IAMVGPNGIGKSTILKLIAGEL---------QPSSGTVFR---------------SAKVR 93
           + ++GPNGIGKST LK++AGEL          PS   V +                 ++R
Sbjct: 103 VGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELR 162

Query: 94  IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQ--KLRAHLGSFG-VTGNLALQPMYT--- 147
                Q+ VD           + +   G   +  K     G F  V   L L+ +     
Sbjct: 163 AVHKPQY-VD----------LIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDV 211

Query: 148 --LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD---AVEALIQGLVLFQGGILMVSH 202
             LSGG+  RVA A    +   +   DEPS++LD+        +I+ L      +++V H
Sbjct: 212 SELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEH 271

Query: 203 D 203
           D
Sbjct: 272 D 272

Length = 591

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 52.2 bits (125), Expect = 6e-08
 Identities = 46/194 (23%), Positives = 78/194 (40%), Gaps = 38/194 (19%)

Query: 40  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF------------ 87
           GG     + +  I       ++G +G GKST ++++   ++P++G +F            
Sbjct: 4   GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPV 63

Query: 88  -----RSAKV-----RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQ----KLRAHLGS 133
                R  K+     + A+F   H+  L  +S           G PEQ    K    L  
Sbjct: 64  ELREVRRKKIGMVFQQFALFP--HMTILQNTS----LGPE-LLGWPEQERKEKALELLKL 116

Query: 134 FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF 193
            G+       P   LSGG + RV  A+    +P I+L+DE  + LD    +++   L   
Sbjct: 117 VGLEEYEHRYP-DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKL 175

Query: 194 QGG----ILMVSHD 203
           Q      I+ ++HD
Sbjct: 176 QATLQKTIVFITHD 189

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 52.0 bits (125), Expect = 6e-08
 Identities = 48/158 (30%), Positives = 70/158 (44%), Gaps = 34/158 (21%)

Query: 47  NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG-------TVFR-SAKVRIAVFS 98
           +++  I     +A++GP+G GK+T+L++IAG    +SG        V R  A+ R   F 
Sbjct: 20  DISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFV 79

Query: 99  -QHHVDGLDLSSNPLLYMMRCFPGVP--------EQKLRAHLGSFGVT--------GNLA 141
            QH+          L   M  F  +          ++  A      VT         +LA
Sbjct: 80  FQHYA---------LFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA 130

Query: 142 LQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
            +    LSGGQK RVA A+    +P I+LLDEP   LD
Sbjct: 131 DRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALD 168

Length = 353

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 52.5 bits (126), Expect = 6e-08
 Identities = 51/198 (25%), Positives = 83/198 (41%), Gaps = 57/198 (28%)

Query: 51  GIDLDSR----IAMVGPNGIGKSTILKLIAGELQPSSGTV-FR----------------- 88
            + L+ +      +VG +G GK+T+ K+IAG L+P+SG V  R                 
Sbjct: 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRG 361

Query: 89  SAKVRIAVFSQH-----HVD---------GLDLSSNPLLYMMRCF-----PGVPEQKLRA 129
            AK  I +  Q      H           GL+L     L  M+        G  E+K   
Sbjct: 362 RAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDE--LARMKAVITLKMVGFDEEKAEE 419

Query: 130 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD----LDAVEA 185
            L  +             LS G++ RVA A++  K+P I++LDEP+  +D    +D   +
Sbjct: 420 ILDKY----------PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHS 469

Query: 186 LIQGLVLFQGGILMVSHD 203
           +++     +   ++VSHD
Sbjct: 470 ILKAREEMEQTFIIVSHD 487

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 51.1 bits (123), Expect = 6e-08
 Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 25/173 (14%)

Query: 59  AMVGPNGIGKSTILKLIAGELQPSSGTV-FRSAKVRIAVFSQHHVD------GL--DLS- 108
            ++GPNG GK+T +++I G + P SG V F    + IA   ++ +       GL   +  
Sbjct: 30  GLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAA--RNRIGYLPEERGLYPKMKV 87

Query: 109 SNPLLYMMRCFPGVPEQKLRAH----LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK 164
            + L+Y+ +   G+ +++ R      L    +    A + +  LS G + +V F      
Sbjct: 88  IDQLVYLAQ-LKGLKKEEARRRIDEWLERLEL-SEYANKRVEELSKGNQQKVQFIAAVIH 145

Query: 165 KPHIILLDEPSNHLD---LDAVEALIQGLVLFQGGILMVSHDEHLISGSVEEL 214
            P +++LDEP + LD   ++ ++ +I+ L      +++ +H   L    VEEL
Sbjct: 146 DPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMEL----VEEL 194

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD

 Score = 51.2 bits (123), Expect = 7e-08
 Identities = 55/236 (23%), Positives = 97/236 (41%), Gaps = 48/236 (20%)

Query: 44  LFKNLNFGIDLDSRIAMVGPNGIGKST----ILKLIAGELQPSSGTVFRSAKVRIAVFSQ 99
           L ++LN  +     +A+VG +G GKS     IL L+   L  +SG +    +  + +   
Sbjct: 1   LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLS-- 58

Query: 100 HHVDGLDLSS---------NPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPM----- 145
             + G  +++         NPL  M         + LR+          L L+ +     
Sbjct: 59  --IRGRHIATIMQNPRTAFNPLFTMGNHA----IETLRSLGKLSKQARALILEALEAVGL 112

Query: 146 -----------YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEALIQGLV 191
                      + LSGG   RV  A     +P  ++ DEP+  LD+     V  L++ L 
Sbjct: 113 PDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELR 172

Query: 192 LFQG-GILMVSHDEHLISGSVEELWVVSEGK----ATP---FHGTFHDYKKMLQSR 239
              G GIL+++HD  +++   +E+ V+ +G+     T    F+   H+  + L S 
Sbjct: 173 QLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKLLSA 228

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 50.9 bits (122), Expect = 8e-08
 Identities = 51/198 (25%), Positives = 75/198 (37%), Gaps = 38/198 (19%)

Query: 40  GGPIL--FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG------------- 84
           GG  L   +N++  ++    + + GP+G GKST+L+ +     P  G             
Sbjct: 20  GGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDL 79

Query: 85  ------TVFRSAKVRIAVFSQH-----HVDGLDLSSNPLLYMMRCFPGVP----EQKLRA 129
                  V    +  I   SQ       V  LD+ + PLL       GVP      K   
Sbjct: 80  VTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR-----GVPREVARAKAAD 134

Query: 130 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL---DAVEAL 186
            L    +   L      T SGG++ RV  A+       I+LLDEP+  LD      V  L
Sbjct: 135 LLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVEL 194

Query: 187 IQGLVLFQGGILMVSHDE 204
           I+        ++ + HDE
Sbjct: 195 IREAKARGAALVGIFHDE 212

Length = 235

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 51.8 bits (125), Expect = 9e-08
 Identities = 59/207 (28%), Positives = 92/207 (44%), Gaps = 40/207 (19%)

Query: 26  PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 85
            P +SF      +PG   L  +++F        A++G NG GKST+LK+++G  QP +G+
Sbjct: 2   SPYLSFDGIGKTFPGVKAL-DDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGS 60

Query: 86  V--------FRSAKVR----IAVFSQ--HHVDGLDLSSNPLLYMMRCFP---GVPEQKL- 127
           +        F S        +A+  Q  H V  + ++ N  LY+ +  P   G+  ++L 
Sbjct: 61  ILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAEN--LYLGQ-LPHKGGIVNRRLL 117

Query: 128 ----RAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV 183
               R  L   GV  +    P+  LS GQ+  V  AK   +   +I  DEP++ L    +
Sbjct: 118 NYEAREQLEHLGVDID-PDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREI 176

Query: 184 EALI--------QGLVLFQGGILMVSH 202
           E L         +G V     IL VSH
Sbjct: 177 EQLFRVIRELRAEGRV-----ILYVSH 198

Length = 501

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 51.4 bits (124), Expect = 1e-07
 Identities = 23/62 (37%), Positives = 36/62 (58%)

Query: 144 PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHD 203
            M  ++ G K RV  A+  F  P I+LLDEP+N+LD++ +  L   L      ++++SHD
Sbjct: 152 LMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHD 211

Query: 204 EH 205
            H
Sbjct: 212 RH 213

Length = 530

>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 46/182 (25%), Positives = 66/182 (36%), Gaps = 32/182 (17%)

Query: 12  DYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTI 71
            YK EFP P   P    +   + +F Y         +N  I     + ++G NG GKST+
Sbjct: 306 PYKAEFPRPQAFPDWQTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTL 365

Query: 72  LKLIAGELQPSSGTVF----------RSA--KVRIAVFSQHH-----VDGLDLSSNPLLY 114
             L+ G  QP SG +                K+  AVF+  H     +      +NP L 
Sbjct: 366 AMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALV 425

Query: 115 MMRCFPGVPEQKLRAHLG---SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL 171
                     +K    L       +           LS GQK R+A      ++  I+LL
Sbjct: 426 ----------EKWLERLKMAHKLELEDGRISNL--KLSKGQKKRLALLLALAEERDILLL 473

Query: 172 DE 173
           DE
Sbjct: 474 DE 475

Length = 547

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 50.4 bits (120), Expect = 1e-07
 Identities = 50/189 (26%), Positives = 90/189 (47%), Gaps = 31/189 (16%)

Query: 44  LFKNLNFGIDLDSRIAMVGPNGIGKSTILKL-------------IAGELQPSSGTVFRSA 90
           + K++   I  +S   ++GP+G GKST+LK+             + G++      +F+  
Sbjct: 25  ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84

Query: 91  KVRI-----AVFSQH----HVDGLDLSSNPL----LYMMRCFPGVPEQKLRAHLGSFGVT 137
            +++      VF Q     H+   D  + PL    +   R    + E+ LR  +G +   
Sbjct: 85  AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLR-KVGLWKEV 143

Query: 138 GNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL---DAVEALIQGLVLFQ 194
            +    P   LSGGQ+ R+  A+    KP ++L+DEP++ +D+    A+E LI  L   +
Sbjct: 144 YDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-E 202

Query: 195 GGILMVSHD 203
             I++VSH+
Sbjct: 203 IAIVIVSHN 211

Length = 257

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 4/58 (6%)

Query: 44 LFKNLN--FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQ 99
          LF+N++  FG    +R  ++G NG GKST +K++ G+L+PS+G V      R+    Q
Sbjct: 16 LFENISVKFG--GGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQ 71

Length = 530

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score = 49.8 bits (120), Expect = 2e-07
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 6/86 (6%)

Query: 147 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ-GLVLFQGG--ILMVSHD 203
            LSGGQK R+A A+   + P I+LLDE ++ LD +  E L+Q  L     G   ++++H 
Sbjct: 139 QLSGGQKQRIAIARALLRNPKILLLDEATSALDAE-SEKLVQEALDRAMKGRTTIVIAHR 197

Query: 204 EHLISGSVEELWVVSEGKATPFHGTF 229
              I  + + + V+  G+     GT 
Sbjct: 198 LSTIRNA-DLIAVLQNGQVVE-QGTH 221

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 43/173 (24%), Positives = 70/173 (40%), Gaps = 38/173 (21%)

Query: 48  LNFGIDLDSRIAMVGPNGIGKSTILKLI------------------------AGELQPSS 83
           LNF +    ++A++GP+G GKSTIL+++                         G L P+ 
Sbjct: 19  LNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78

Query: 84  GTVFRSAKVRIAVFSQH-----HVDGLDLSSNPLLYMMRCFPGVPEQKLRAH----LGSF 134
               R  + +I +  Q      H   LD   N     +    G+   +        L   
Sbjct: 79  EKHLRQMRNKIGMVFQSFNLFPHKTVLD---NVTEAPVLVL-GMARAEAEKRAMELLDMV 134

Query: 135 GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALI 187
           G+       P   LSGGQ+ RVA A+    +P ++L DE ++ LD + V  ++
Sbjct: 135 GLADKADHMPA-QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVL 186

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 54/192 (28%)

Query: 27  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI--AGELQPS-- 82
           PI+  SD S  Y     L  +++     +   A++GP+G GKST+L+ I    +L P   
Sbjct: 4   PILQVSDLSVYYNKKKAL-NSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT 62

Query: 83  -SGTVF---------RSAKVRI-----AVFSQHHVDGLDLSSNPLLYMMRCFPGVP---- 123
            +G++          R+  V +      VF Q +   + +  N ++Y +R   G+     
Sbjct: 63  ITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYEN-VVYGLR-LKGIKDKQV 120

Query: 124 ----------------EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 167
                           E K R H  + G            LSGGQ+ RV  A++    P 
Sbjct: 121 LDEAVEKSLKGASIWDEVKDRLHDSALG------------LSGGQQQRVCIARVLATSPK 168

Query: 168 IILLDEPSNHLD 179
           IILLDEP++ LD
Sbjct: 169 IILLDEPTSALD 180

Length = 252

>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 49/166 (29%), Positives = 78/166 (46%), Gaps = 15/166 (9%)

Query: 54  LDSRIAMV-GPNGIGKSTILKLIAGELQPSSGTVF-------RSAKVRIAVFSQHHVDGL 105
           L S I  + G NG GKS++L++IAG +QPSSG ++         AK        +    L
Sbjct: 24  LPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKL 83

Query: 106 DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK 165
           +++    L          E  L A +  F +  +L  +  Y+LS G +  VA A++   +
Sbjct: 84  EMTVFENLKFWSEIYNSAET-LYAAIHYFKLH-DLLDEKCYSLSSGMQKIVAIARLIACQ 141

Query: 166 PHIILLDEPSNHLDLDAVEALIQGLVLFQ---GGI-LMVSHDEHLI 207
             + LLDE   +L  +    L+  L++ +   GGI L+ SH E  I
Sbjct: 142 SDLWLLDEVETNLSKEN-RDLLNNLIVMKANSGGIVLLSSHLESSI 186

Length = 195

>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional

 Score = 50.6 bits (122), Expect = 2e-07
 Identities = 55/176 (31%), Positives = 80/176 (45%), Gaps = 52/176 (29%)

Query: 38  YPGG-PILFKNLNFGIDLDSR----IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV 92
           Y G   ++      GIDLD      I +VGP+G GKST+L+++AG  + +SG ++   +V
Sbjct: 13  YDGKTQVIK-----GIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRV 67

Query: 93  --------R-IA-VFSQHHVDGLDLSSNPLLY-MMRCFP---------GVPEQKLRAHLG 132
                   R IA VF Q          N  LY  M             G+P+ ++   + 
Sbjct: 68  VNELEPADRDIAMVF-Q----------NYALYPHMSVRENMAYGLKIRGMPKAEIEERVA 116

Query: 133 SFGVTGNLALQPMYT-----LSGGQKSRVAFAKITFKKPHIILLDEP-SNHLDLDA 182
                  L L+P+       LSGGQ+ RVA  +   ++P + L DEP SN   LDA
Sbjct: 117 E--AARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSN---LDA 167

Length = 356

>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 55/220 (25%), Positives = 85/220 (38%), Gaps = 69/220 (31%)

Query: 27  PIISFSDASFG-YPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 85
           P     D SF  YPG                 + +VG +G GK+T+L  ++  L P +G 
Sbjct: 18  PRKGCRDVSFDLYPG---------------EVLGIVGESGSGKTTLLNALSARLAPDAGE 62

Query: 86  V-FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGV----PEQKLRAHLGSFGVTGNL 140
           V +R              D   LS      ++R   G     P   LR  + S G  GN+
Sbjct: 63  VHYRMR-------DGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQV-SAG--GNI 112

Query: 141 ALQPM------Y--------------------------TLSGGQKSRVAFAKITFKKPHI 168
             + M      Y                          T SGG + R+  A+     P +
Sbjct: 113 GERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRL 172

Query: 169 ILLDEPSNHLDLDAVEA----LIQGLVLFQG-GILMVSHD 203
           + +DEP+  LD+ +V+A    L++GLV   G  +++V+HD
Sbjct: 173 VFMDEPTGGLDV-SVQARLLDLLRGLVRELGLAVVIVTHD 211

Length = 258

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 56/198 (28%), Positives = 88/198 (44%), Gaps = 27/198 (13%)

Query: 25  GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 84
            PP++     S  Y G  +L K ++F +      A++G NG GKST++K+IAG + P SG
Sbjct: 8   APPLLCARSISKQYSGVEVL-KGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSG 66

Query: 85  TVFRSAKVRI-AVFSQHHVDGLDL-SSNPLLYMMRCFP----------GVP-----EQKL 127
           T+            ++ H  G+ L    PLL     FP          G+P      QK+
Sbjct: 67  TLEIGGNPCARLTPAKAHQLGIYLVPQEPLL-----FPNLSVKENILFGLPKRQASMQKM 121

Query: 128 RAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALI 187
           +  L + G   +L      +L    +  V   +   +   I++LDEP+  L     E L 
Sbjct: 122 KQLLAALGCQLDLDSSAG-SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLF 180

Query: 188 QGL--VLFQG-GILMVSH 202
             +  +L QG GI+ +SH
Sbjct: 181 SRIRELLAQGVGIVFISH 198

Length = 510

>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 55/187 (29%), Positives = 81/187 (43%), Gaps = 28/187 (14%)

Query: 58  IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQH----HVDGLDLSSNPLL 113
           + +VGPNG GKST+L  +AG +   SG++ + A   +  +S      H   L     P  
Sbjct: 28  LHLVGPNGAGKSTLLARMAG-MTSGSGSI-QFAGQPLEAWSATELARHRAYLSQQQTPP- 84

Query: 114 YMMRCFP----GVPEQKLRAHLGSFGVTGNLAL-----QPMYTLSGGQKSRVAFAKITFK 164
           + M  +       P++     L    V G LAL     +    LSGG+  RV  A +  +
Sbjct: 85  FAMPVWHYLTLHQPDKTRTELLND--VAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ 142

Query: 165 -------KPHIILLDEPSNHLDLDAVEALIQGLVLF--QG-GILMVSHDEHLISGSVEEL 214
                     ++LLDEP N LD+    AL + L     QG  I+M SHD +         
Sbjct: 143 ITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRA 202

Query: 215 WVVSEGK 221
           W++  GK
Sbjct: 203 WLLKRGK 209

Length = 248

>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 55/204 (26%), Positives = 90/204 (44%), Gaps = 35/204 (17%)

Query: 30  SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKL------------IAG 77
           S  + +  Y    ILF ++N  I      A +GP+G GKST L+             + G
Sbjct: 7   SVKNLNLWYGSKQILF-DINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKG 65

Query: 78  EL--------QPSSGTVFRSAKVRIAVFSQHHVDGLDLSSN----PLLYMM----RCFPG 121
           EL           +  V   AKV + VF + +     +  N    P L+ +    +    
Sbjct: 66  ELDIDGIDVYSVDTNVVLLRAKVGM-VFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDE 124

Query: 122 VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD-- 179
           + E+ L + +G +   G+      + LSGGQ+ R+  A+    KP ++L+DEP + LD  
Sbjct: 125 IVEKSLTS-VGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPV 183

Query: 180 -LDAVEALIQGLVLFQGGILMVSH 202
             + +E LIQ L      I++V+H
Sbjct: 184 ATNVIENLIQELKK-NFTIIVVTH 206

Length = 251

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 54/213 (25%), Positives = 92/213 (43%), Gaps = 51/213 (23%)

Query: 45  FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG 104
             N++  +       ++G +G GKST+++ +    +P+SG+V               VDG
Sbjct: 21  LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVI--------------VDG 66

Query: 105 LDLS--SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL------QPM----------- 145
            DL+  SN  L   R   G+  Q     L S  V GN+AL       P            
Sbjct: 67  QDLTTLSNSELTKARRQIGMIFQHFNL-LSSRTVFGNVALPLELDNTPKDEIKRKVTELL 125

Query: 146 -------------YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL-- 190
                          LSGGQK RVA A+     P ++L DE ++ LD    +++++ L  
Sbjct: 126 ALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKE 185

Query: 191 VLFQGG--ILMVSHDEHLISGSVEELWVVSEGK 221
           +  + G  IL+++H+  ++    + + V+S G+
Sbjct: 186 INRRLGLTILLITHEMDVVKRICDCVAVISNGE 218

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 7/78 (8%)

Query: 16  EFPTPDDR---PGPP-IISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKS 69
           E P   +R   P P   +S    +   PG   PIL K ++F +     + ++GP+G GKS
Sbjct: 318 ELPAAAERMPLPAPQGALSVERLTAAPPGQKKPIL-KGISFALQAGEALGIIGPSGSGKS 376

Query: 70  TILKLIAGELQPSSGTVF 87
           T+ +L+ G   P+SG+V 
Sbjct: 377 TLARLLVGIWPPTSGSVR 394

Length = 580

>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 49.6 bits (118), Expect = 3e-07
 Identities = 44/172 (25%), Positives = 70/172 (40%), Gaps = 50/172 (29%)

Query: 45  FKNLNFGIDLDSRIAMVGPNGIGKSTILKLI----------------------------- 75
            KN++  I  +S  A++GP+G GKST ++ +                             
Sbjct: 28  LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87

Query: 76  AGELQPSSGTVFRSAK-VRIAVFSQ-------HHVDGLDLSSNPLLYMMRCFPGVPEQKL 127
             EL+ + G VF+      ++++         H  +  DL             GV E  L
Sbjct: 88  VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLD------------GVVENAL 135

Query: 128 RAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
           R+    +  T +    P  +LSGGQ+ R+  A+    KP IIL DEP++ LD
Sbjct: 136 RS-AALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALD 186

Length = 258

>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50

 Score = 49.1 bits (118), Expect = 3e-07
 Identities = 48/188 (25%), Positives = 77/188 (40%), Gaps = 51/188 (27%)

Query: 52  IDLDSRI-AMVGPNGIGKSTILKLIA----GELQPSS------GTVFRSAKVRIAV---F 97
           I+  S +  +VG NG GK+TI++ +     GEL P+S        + R  +VR  V   F
Sbjct: 18  IEFFSPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAF 77

Query: 98  SQHHVDGLDL----SSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK 153
              + +G       S   L  ++ C           H G         L      SGG+K
Sbjct: 78  E--NANGKKYTITRSLAILENVIFC-----------HQGESNW---PLLDMRGRCSGGEK 121

Query: 154 S------RVAFAKITFKKPHIILLDEPSNHLD--------LDAVEALIQGLVLFQGGILM 199
                  R+A A+       I+ LDEP+ +LD         + +E   +    FQ  +++
Sbjct: 122 VLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEER-KSQKNFQ--LIV 178

Query: 200 VSHDEHLI 207
           ++HDE L+
Sbjct: 179 ITHDEELV 186

The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204

>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C

 Score = 49.5 bits (118), Expect = 3e-07
 Identities = 47/178 (26%), Positives = 70/178 (39%), Gaps = 60/178 (33%)

Query: 40  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTI----LKL--IAGELQPSSGTVFRSAKVR 93
           GG  + +N++F I    R+ ++G  G GKST+    L+L    G++Q             
Sbjct: 15  GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQ------------- 61

Query: 94  IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQK-------LRAHLGSFG---------VT 137
                   +DG+  +S PL    + F GV  QK        R +L  +G         V 
Sbjct: 62  --------IDGVSWNSVPLQKWRKAF-GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVA 112

Query: 138 GNLALQPM----------------YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
             + L+ +                  LS G K  +  A+    K  I+LLDEPS HLD
Sbjct: 113 EEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLD 170

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275

>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

 Score = 50.2 bits (120), Expect = 3e-07
 Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 37/168 (22%)

Query: 35  SFG---YPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK 91
           SFG         + +NLN  I     +A+VG +G GK+T+L++I G  +      +R   
Sbjct: 386 SFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDS 445

Query: 92  VRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA-----HLGSFGVTGNLALQ--- 143
            ++ V             N +  ++   PG  E +        HL S     N A++   
Sbjct: 446 GKVEV-----------PKNTVSALI---PGEYEPEFGEVTILEHLRSKTGDLNAAVEILN 491

Query: 144 ------------PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
                           LS GQK R   AK+  ++P+++L+DE + HLD
Sbjct: 492 RAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLD 539

Length = 593

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 48.7 bits (117), Expect = 4e-07
 Identities = 43/185 (23%), Positives = 69/185 (37%), Gaps = 72/185 (38%)

Query: 32  SDASFGYPGGPILFKNLNFGIDLDSRI----AMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           S+ +  Y    IL      G+ L+        ++G NG+GK+T+LK + G L   SG++ 
Sbjct: 4   SNLNVYYGQSHILR-----GVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSI- 57

Query: 88  RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG----------SFGVT 137
                         +DG D++  P           P ++ RA +              V 
Sbjct: 58  -------------RLDGEDITKLP-----------PHERARAGIAYVPQGREIFPRLTVE 93

Query: 138 GNL-----------------------ALQPMYT-----LSGGQKSRVAFAKITFKKPHII 169
            NL                        L+ M       LSGGQ+ ++A A+    +P ++
Sbjct: 94  ENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLL 153

Query: 170 LLDEP 174
           LLDEP
Sbjct: 154 LLDEP 158

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional

 Score = 49.1 bits (118), Expect = 5e-07
 Identities = 56/224 (25%), Positives = 88/224 (39%), Gaps = 73/224 (32%)

Query: 47  NLNFGIDLD---SRI-AMVGPNGIGKSTILKLIAGELQPSSG-------TVFRSA----- 90
           +L   ++L      I A+ G +G GK++++  I+G  +P  G        +F +      
Sbjct: 12  DLCLTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICL 71

Query: 91  ---KVRIA-VFSQH------HVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL 140
              K RI  VF          V G     N L Y M          + A      +   L
Sbjct: 72  PPEKRRIGYVFQDARLFPHYKVRG-----N-LRYGMAK-------SMVAQFDK--IVALL 116

Query: 141 ALQPM-----YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL-------DAVEALIQ 188
            ++P+      +LSGG+K RVA  +     P ++L+DEP   LDL         +E L +
Sbjct: 117 GIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAR 176

Query: 189 GLVLFQGGILMVSH--DE------HLI---------SGSVEELW 215
            + +    IL VSH  DE       ++          G +EE+W
Sbjct: 177 EINI---PILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVW 217

Length = 352

>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional

 Score = 48.7 bits (116), Expect = 6e-07
 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 3/118 (2%)

Query: 58  IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR 117
           I +VG NG GKST+  +I G L P+ G V R+ +V +   S      L    N + + M 
Sbjct: 53  IGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIEN-IEFKML 111

Query: 118 CFPGVPEQ--KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 173
           C     ++   +   +  F   G    QP+   S G ++++ F+      P I+++DE
Sbjct: 112 CMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDE 169

Length = 264

>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.4 bits (115), Expect = 7e-07
 Identities = 59/215 (27%), Positives = 95/215 (44%), Gaps = 36/215 (16%)

Query: 25  GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI--AGELQPS 82
              II+ SD    Y G     K ++   + +   A++GP+G GKST L+ +    +L P 
Sbjct: 2   AKKIITSSDVHLFY-GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPG 60

Query: 83  ---SGTVFRSAK---------VRI-----AVFSQHHVDGLDLSSNPLLYMMRCFPGVP-- 123
              +G V    +         V++      VF Q +     +  N ++Y +R   GV   
Sbjct: 61  VTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYEN-VIYGLR-LAGVKDK 118

Query: 124 -------EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 176
                  E  L+       V  +L  +   +LSGGQ+ RV  A++   KP +ILLDEP++
Sbjct: 119 AVLDEAVETSLKQAAIWDEVKDHLH-ESALSLSGGQQQRVCIARVLAVKPDVILLDEPTS 177

Query: 177 HLDLDAVEALIQGLVLF---QGGILMVSHDEHLIS 208
            LD       I+ ++L    Q  I++V+H  H  S
Sbjct: 178 ALD-PISSTQIENMLLELRDQYTIILVTHSMHQAS 211

Length = 252

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score = 49.2 bits (118), Expect = 7e-07
 Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 45/192 (23%)

Query: 29  ISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86
           I F + +F YPG   P L +N+NF I     +A+VG +G GKSTI  L+        G +
Sbjct: 342 IEFRNVTFTYPGKEVPAL-RNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEI 400

Query: 87  F-----------RSAKVRIAVFSQH-HVDGLDLSSN------------------PLLYMM 116
                        S + ++A+ SQ+ H+    +++N                   + Y M
Sbjct: 401 LLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAM 460

Query: 117 RCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 176
             F    +  L   +G  GV           LSGGQ+ R+A A+   +   I++LDE ++
Sbjct: 461 D-FINKMDNGLDTVIGENGV----------LLSGGQRQRIAIARALLRDSPILILDEATS 509

Query: 177 HLDLDAVEALIQ 188
            LD ++ E  IQ
Sbjct: 510 ALDTES-ERAIQ 520

Length = 582

>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE

 Score = 48.3 bits (115), Expect = 8e-07
 Identities = 43/189 (22%), Positives = 83/189 (43%), Gaps = 25/189 (13%)

Query: 58  IAMVGPNGIGKSTILKLIAGELQPSSGTVF--------------RSAKVRIAVFSQHHVD 103
           + ++G +G GKST+ +L+ G  +P+ GTV               R+ +  + +  Q    
Sbjct: 40  VGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPS 99

Query: 104 GLDLSSN-------PLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV 156
            ++           PL ++        + ++   L   G+    A +    LSGGQ  R+
Sbjct: 100 AVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRI 159

Query: 157 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQ--GGI--LMVSHDEHLISGSVE 212
             A+    KP +I+LDE  ++LD+     +++ L   Q   G   L ++HD  L+    +
Sbjct: 160 NIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQ 219

Query: 213 ELWVVSEGK 221
            + V+ +G+
Sbjct: 220 RVAVMDKGQ 228

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 48.7 bits (117), Expect = 8e-07
 Identities = 52/249 (20%), Positives = 95/249 (38%), Gaps = 50/249 (20%)

Query: 34  ASFGYPGGPI-LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVF 87
            SF    G +     ++F +     + +VG +G GKS + K I G L         G + 
Sbjct: 9   VSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEIL 68

Query: 88  ------------RSAKVR---IAVFSQHHVDGLDLSSNPLL--------YMMRCFPGVP- 123
                          K+R   IA+  Q   D +  S NP++         +     G+  
Sbjct: 69  FDGKDLLSLSEKELRKIRGKEIAMIFQ---DPMT-SLNPVMTIGDQIAEVLRLHGKGLSK 124

Query: 124 ---EQKLRAHLGSFGVTGNLALQPMY--TLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 178
              +++    L   G+         Y   LSGG + RV  A      P +++ DEP+  L
Sbjct: 125 KEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTAL 184

Query: 179 DLDA---VEALIQGLVLFQG-GILMVSHDEHLISGSVEELWVVSEGK----ATP---FHG 227
           D+     +  L++ L   +G  +++++HD  +++   + + V+  G+          F  
Sbjct: 185 DVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKN 244

Query: 228 TFHDYKKML 236
             H Y + L
Sbjct: 245 PKHPYTRGL 253

Length = 316

>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional

 Score = 48.3 bits (115), Expect = 9e-07
 Identities = 51/198 (25%), Positives = 84/198 (42%), Gaps = 53/198 (26%)

Query: 46  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG--ELQPSSGTVFRSAKVRIAVFSQHH-V 102
           KN+N  I  +   A++GP+G GKST +K +    EL PS  T  +       +F + + V
Sbjct: 41  KNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100

Query: 103 DGLDLSSNPLLYMMRCFP--------------GVPEQKL--------------------R 128
           + L  +   +      FP              G+ ++K                     R
Sbjct: 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDR 160

Query: 129 AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEA 185
            H  ++G            LSGGQ+ R+  A+    +P +IL+DEP++ LD  +   VE 
Sbjct: 161 LHDNAYG------------LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEE 208

Query: 186 LIQGLVLFQGGILMVSHD 203
           L+Q L      I++V+H+
Sbjct: 209 LVQELKK-DYSIIIVTHN 225

Length = 271

>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 47/193 (24%), Positives = 73/193 (37%), Gaps = 37/193 (19%)

Query: 29  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 88
           +  ++  F +  G     N+N  I       +VG  G GKS++L  I GE+Q   G V  
Sbjct: 1   VQVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHW 60

Query: 89  SAKVRIAVFSQHHVDGLDLSSNPLLYMMR-------------CFPGVPEQKLRAHLGSFG 135
           S K                +   + Y  +              F G P  K R       
Sbjct: 61  SNKNES---EPSFEATRSRNRYSVAYAAQKPWLLNATVEENITF-GSPFNKQRYKA---- 112

Query: 136 VTGNLALQP----------------MYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
           VT   +LQP                   LSGGQ+ R+  A+  ++  +I+ LD+P + LD
Sbjct: 113 VTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALD 172

Query: 180 LDAVEALIQGLVL 192
           +   + L+Q  +L
Sbjct: 173 IHLSDHLMQEGIL 185

The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 51/197 (25%), Positives = 75/197 (38%), Gaps = 63/197 (31%)

Query: 18  PTPDDRPGPPIISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKL 74
           P P   PG P IS  +  F +      P L  N+N  + + S +A+VG  G GK++++  
Sbjct: 604 PNPPLEPGLPAISIKNGYFSWDSKAERPTL-SNINLDVPVGSLVAIVGSTGEGKTSLISA 662

Query: 75  IAGELQPSSGT--VFR-------------SAKVR-----------------IAVFSQHHV 102
           + GEL P S    V R             +A VR                 I V +  H 
Sbjct: 663 MLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQH- 721

Query: 103 DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT 162
              DL            PG    +    +G  GV           +SGGQK RV+ A+  
Sbjct: 722 ---DLDL---------LPGGDLTE----IGERGV----------NISGGQKQRVSMARAV 755

Query: 163 FKKPHIILLDEPSNHLD 179
           +    + + D+P + LD
Sbjct: 756 YSNSDVYIFDDPLSALD 772

Length = 1622

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 17/72 (23%), Positives = 37/72 (51%)

Query: 28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
          I + +  S   P    + K+++      ++I ++G NG GKST+L+++AG  +  +G   
Sbjct: 4  IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEAR 63

Query: 88 RSAKVRIAVFSQ 99
           +  +++    Q
Sbjct: 64 PAPGIKVGYLPQ 75

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 45/155 (29%)

Query: 58  IAMVGPNGIGKSTILKLIAGEL---------QPS--------SGTVF-------RSAKVR 93
             ++GPNGIGK+T +K+++GEL         +PS         GT          + +++
Sbjct: 102 TGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIK 161

Query: 94  IAVFSQHHVDGLDLSSNPLLYMMRCFPG--------VPEQ-KLRAHLGSFGVTGNLALQP 144
           +    Q+ VD           + + F G        V E+ KL   +   G+  N+  + 
Sbjct: 162 VVHKPQY-VD----------LIPKVFKGKVRELLKKVDERGKLDEVVERLGLE-NILDRD 209

Query: 145 MYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
           +  LSGG+  RVA A    +       DEP+++LD
Sbjct: 210 ISELSGGELQRVAIAAALLRDADFYFFDEPTSYLD 244

Length = 590

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 46/174 (26%), Positives = 74/174 (42%), Gaps = 40/174 (22%)

Query: 43  ILFKNLN---------FGIDLDSR----IAMVGPNGIGKSTILKLIAGELQPSSGTV--- 86
           I    +N         F I LD      + ++GP+G GKS++L+++     P SGT+   
Sbjct: 3   IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62

Query: 87  -----FRSAKVRIA----------VFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAH 130
                F       A          VF Q+++   L +  N +    R   G+ + +  A 
Sbjct: 63  GNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVL-GLSKDQALAR 121

Query: 131 LGSFGVTGNLALQPM-----YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
             +  +   L L+P        LSGGQ+ RVA A+    +P ++L DEP+  LD
Sbjct: 122 --AEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALD 173

Length = 242

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 3/48 (6%)

Query: 146 YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEALIQGL 190
             LSGGQ+ R+  A+    +P ++LLDEP++ LD  A   +E LIQ L
Sbjct: 143 LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQEL 190

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 53/193 (27%), Positives = 80/193 (41%), Gaps = 33/193 (17%)

Query: 18  PTPDD-------RPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKST 70
           P PD+           P I  ++    Y   PIL  NL++ ++      +VGPNG GKST
Sbjct: 243 PEPDEPSARHALPANEPRIVLNNGVVSYNDRPIL-HNLSWQVNPGEHWQIVGPNGAGKST 301

Query: 71  ILKLIAGE-------------LQPSSGTVFRSAKVRIA-VFSQHHVDGLDLSSNPLLYMM 116
           +L LI G+              +  SG      K  I  V S  H+D   +S++    ++
Sbjct: 302 LLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLD-YRVSTSVRNVIL 360

Query: 117 RCF-------PGVPE-QKLRAH--LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP 166
             F         V + Q+  A   L   G+    A  P ++LS GQ+      +   K P
Sbjct: 361 SGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHP 420

Query: 167 HIILLDEPSNHLD 179
            +++LDEP   LD
Sbjct: 421 TLLILDEPLQGLD 433

Length = 490

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 55/237 (23%), Positives = 103/237 (43%), Gaps = 47/237 (19%)

Query: 46  KNLNFGIDLDSRIAMVGPNGIGKS----TILKLI---AGELQPSSGTVFRSAKVRIAVFS 98
           +NL+F +     +A+VG +G GKS     +++L+    G +Q     + R ++  I +  
Sbjct: 33  RNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSE 92

Query: 99  Q-----HHVDGLDLS---SNPLLYMMRCFPGVPEQ---KLRAHLGSFGVTGNLALQPM-- 145
           Q      HV G D++     P+  +   F  V EQ    +R H G+      +  + M  
Sbjct: 93  QSAAQMRHVRGADMAMIFQEPMTSLNPVFT-VGEQIAESIRLHQGASREEAMVEAKRMLD 151

Query: 146 ---------------YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL 190
                          + LSGG + RV  A     +P +++ DEP+  LD+     ++Q +
Sbjct: 152 QVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLI 211

Query: 191 VLFQG----GILMVSHDEHLISGSVEELWVVSEGKATP-------FHGTFHDYKKML 236
            + Q     G++ ++HD  +++   + + V+ +G+A         FH   H Y + L
Sbjct: 212 KVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFHAPQHPYTRAL 268

Length = 623

>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 49/219 (22%), Positives = 92/219 (42%), Gaps = 45/219 (20%)

Query: 58  IAMVGPNGIGKSTILKLIAGELQPSSGTVF----------RSAK------VRI------- 94
           +A++G +G GKST+ +L+ G   PS G V           R+ +      +++       
Sbjct: 41  VALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSIS 100

Query: 95  AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKS 154
           AV  +  V   ++   PL +++         +    L +  +  ++  +    LSGGQ  
Sbjct: 101 AVNPRKTVR--EIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQ 158

Query: 155 RVAFAKITFKKPHIILLDEPSNHLDL-------DAVEALIQGLVLFQGGI--LMVSHDEH 205
           RV  A+    +P +++LDE  ++LDL         ++ L Q     Q G   L ++HD  
Sbjct: 159 RVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQ-----QFGTACLFITHDLR 213

Query: 206 LISGSVEELWVVSEGK-----ATPFHGTF-HDYKKMLQS 238
           L+    + + V+  G+           TF     ++LQ+
Sbjct: 214 LVERFCQRVMVMDNGQIVETQPVGDKLTFSSPAGRVLQN 252

Length = 268

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 67/250 (26%), Positives = 105/250 (42%), Gaps = 57/250 (22%)

Query: 18  PTPDDRPGPPIISFSDASFGYPGGPILF----------KNLNFGIDLDSRIAMVGPNGIG 67
           P P   P  P++        +P    +           KN++F +     + +VG +G G
Sbjct: 265 PVPLPEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSG 324

Query: 68  KST----ILKLIA--GEL----QPSSGTVFRS---AKVRIAVFSQHHVDGLDLSSNPLLY 114
           KST    +L+LI   GE+    QP      R     + RI V  Q     L    NP L 
Sbjct: 325 KSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSL----NPRLN 380

Query: 115 MMRCFPGVPEQKLRAHLGSFG----------VTGNLALQP----MY--TLSGGQKSRVAF 158
           +++    + E+ LR H  +            V   + L P     Y    SGGQ+ R+A 
Sbjct: 381 VLQ----IIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAI 436

Query: 159 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQG-------GILMVSHDEHLISGSV 211
           A+    KP +I+LDEP++ LD   V+A I  L L +          L +SHD H++    
Sbjct: 437 ARALILKPSLIILDEPTSSLD-KTVQAQI--LALLKSLQQKHQLAYLFISHDLHVVRALC 493

Query: 212 EELWVVSEGK 221
            ++ V+ +G+
Sbjct: 494 HQVIVLRQGE 503

Length = 529

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 63/276 (22%), Positives = 96/276 (34%), Gaps = 72/276 (26%)

Query: 18  PTPDDRPGPPIISFSDASFGYPGGPILFKNLNF------GIDLDSR----IAMVGPNGIG 67
           P P     P ++   D    +P      +          GI L  R    + +VG +G G
Sbjct: 266 PPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSG 325

Query: 68  KSTILKLIAGELQPSSGTVF--------------RSAKVRIAVFSQH------------- 100
           KST+   +   L PS G +               R  + R+ V  Q              
Sbjct: 326 KSTLGLALLR-LIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQ 384

Query: 101 ------HVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKS 154
                  V    LS               +Q++   L   G+      +  +  SGGQ+ 
Sbjct: 385 IIEEGLRVHEPKLS-----------AAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQ 433

Query: 155 RVAFAKITFKKPHIILLDEPSNHLD-------LDAVEALIQGLVLFQGGILMVSHDEHLI 207
           R+A A+    KP +ILLDEP++ LD       LD +  L Q   L     L +SHD  ++
Sbjct: 434 RIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGL---SYLFISHDLAVV 490

Query: 208 SGSVEELWVVSEGK-------ATPFHGTFHDYKKML 236
                 + V+ +GK          F    H+Y + L
Sbjct: 491 RALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTRAL 526

Length = 534

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 45/170 (26%), Positives = 69/170 (40%), Gaps = 26/170 (15%)

Query: 29  ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           I+  +A+F +    P     + F I   + +A+VG  G GKS++L  +  E+    G V 
Sbjct: 637 ITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVH 696

Query: 88  RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP--EQKLRAHLGSFGVTGNLALQPM 145
               V   V  Q  +    L  N L        G    E+  +  L +  +  +L + P 
Sbjct: 697 MKGSVAY-VPQQAWIQNDSLRENILF-------GKALNEKYYQQVLEACALLPDLEILPS 748

Query: 146 ----------YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEA 185
                       LSGGQK RV+ A+  +    I L D+P     L AV+A
Sbjct: 749 GDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDP-----LSAVDA 793

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 54/260 (20%), Positives = 94/260 (36%), Gaps = 73/260 (28%)

Query: 35  SFGYPGGPI-LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG----ELQPSSGTVF-- 87
            F   GG +   ++++F ++    + +VG +G GKST+   + G      + +SG V   
Sbjct: 14  EFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILD 73

Query: 88  ----------RSAKVR---IAVFSQHHVDGLDLSSNPLLY-------MMRCFPGVPEQKL 127
                        K+R   IA+  Q  +  L    NP++         +R        + 
Sbjct: 74  GRDLLGLSEREMRKLRGKRIAMIFQDPMTSL----NPVMTIGDQIREALRLHGKGSRAEA 129

Query: 128 RAHLGS-FGVTG--NLALQPMYT--LSGGQKSRVAFAKITFKKPHIILLDEPSNHLD--- 179
           R          G  +   +  Y   LSGG + RV  A     KP +++ DEP+  LD   
Sbjct: 130 RKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTT 189

Query: 180 ----LDAVEALIQGLVLFQGGILMVSHDEHLIS-----------------GSVEELWVVS 218
               LD ++ L + L      +L ++HD  +++                 G  EE+    
Sbjct: 190 QAQILDLLKDLQREL---GMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEI---- 242

Query: 219 EGKATPFHGTFHDYKKMLQS 238
                      H Y + L +
Sbjct: 243 ------LSNPQHPYTRGLLA 256

Length = 539

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 44/173 (25%), Positives = 69/173 (39%), Gaps = 50/173 (28%)

Query: 40   GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIA-VFS 98
             G  + ++L+F ++   R+ ++G  G GKST+L                SA +R+     
Sbjct: 1230 AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLL----------------SALLRLLSTEG 1273

Query: 99   QHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF----------------GVTGNLAL 142
            +  +DG+  +S  L    + F GV  QK+    G+F                 V   + L
Sbjct: 1274 EIQIDGVSWNSVTLQTWRKAF-GVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGL 1332

Query: 143  QPM----------------YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
            + +                Y LS G K  +  A+    K  I+LLDEPS HLD
Sbjct: 1333 KSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLD 1385

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 5/73 (6%)

Query: 143 QPMYTLSGGQKSRVAFAKITFKKPH--IILLDEPSNHLDLDAVEAL---IQGLVLFQGGI 197
           Q + TLSGG+  RV  A   F +P   + +LDEPS  L    +  L   I+GL+     +
Sbjct: 83  QKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTV 142

Query: 198 LMVSHDEHLISGS 210
           +++ H+  ++S +
Sbjct: 143 ILIEHNLDVLSSA 155

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 3/61 (4%)

Query: 146 YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV-LFQGG--ILMVSH 202
           + LSGGQK RVA A I   +P  ++ DEP+  LD   V+ +++    L + G  I++V+H
Sbjct: 164 FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223

Query: 203 D 203
           D
Sbjct: 224 D 224

Length = 305

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 35/159 (22%), Positives = 70/159 (44%), Gaps = 26/159 (16%)

Query: 43  ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS---SGTV-FRSAKVRIAVFS 98
            +  +++  ++    +A++G +G GK+T+L  I+G ++     SG + F     +   F 
Sbjct: 21  RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQ 80

Query: 99  QH--HVDGLD-----------LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQP- 144
           +   +V   D           L+   +L + R       +K    +       +LAL   
Sbjct: 81  KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLL----RDLALTRI 136

Query: 145 ----MYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
               +  +SGG++ RV+ A      P +++LDEP++ LD
Sbjct: 137 GGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLD 175

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 48/175 (27%), Positives = 79/175 (45%), Gaps = 31/175 (17%)

Query: 45  FKNLNFGIDLDSRIAMVGPNGIGKSTILKL------------IAGELQPSSGTVFRS--- 89
            K++N  I      A++GP+G GKST+L+             I G+L      ++ +   
Sbjct: 19  LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78

Query: 90  AKVRIAV---FSQHHVDGLDLSSNPLLYMMRC--------FPGVPEQKLRAHLGSFGVTG 138
           A +RI V   F + +   + +  N + Y +R            V E+ LR       V  
Sbjct: 79  ADLRIKVGMVFQKPNPFPMSIYEN-VAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKD 137

Query: 139 NLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEALIQGL 190
            L     + LSGGQ+ R+  A+    +P +IL+DEP++ LD  A   +E L++ L
Sbjct: 138 RLK-SHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEEL 191

Length = 249

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 64/213 (30%), Positives = 89/213 (41%), Gaps = 60/213 (28%)

Query: 33  DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV 92
           DASF  PGG I               A+VG NG GKST+ K + G ++ +SG        
Sbjct: 25  DASFTVPGGSI--------------AALVGVNGSGKSTLFKALMGFVRLASG-------- 62

Query: 93  RIAVFSQHHVDGLDLSSNPLLYMMRC------FPGVPEQKLRAHLGSFG----------- 135
           +I++  Q     L    N + Y+ +       FP + E  +   +G +G           
Sbjct: 63  KISILGQPTRQAL--QKNLVAYVPQSEEVDWSFPVLVEDVVM--MGRYGHMGWLRRAKKR 118

Query: 136 ----VTGNLALQPMY--------TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV 183
               VT  LA   M          LSGGQK RV  A+   ++  +ILLDEP   +D+   
Sbjct: 119 DRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKT- 177

Query: 184 EALIQGLV--LFQGGILMVSHDEHLISGSVEEL 214
           EA I  L+  L   G  M+    +L  GSV E 
Sbjct: 178 EARIISLLRELRDEGKTMLVSTHNL--GSVTEF 208

Length = 272

>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 51/205 (24%), Positives = 79/205 (38%), Gaps = 46/205 (22%)

Query: 20  PDDRP-GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE 78
            DDRP     I   + SF Y    ++ +N+N  +     +A+VG  G GKST+  L+ G 
Sbjct: 331 NDDRPLQSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGY 390

Query: 79  LQPSSGTVF-----------RSAKVRIAVFSQHHVD-----------GLDLSSN------ 110
              + G +               +  +A+  Q  V            G D+S        
Sbjct: 391 YPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQAL 450

Query: 111 ---PLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 167
               L  + R  P      L   LG     GN        LS GQK  +A A++  + P 
Sbjct: 451 ETVQLAELARSLPD----GLYTPLGE---QGN-------NLSVGQKQLLALARVLVQTPQ 496

Query: 168 IILLDEPSNHLDLDAVEALIQGLVL 192
           I++LDE + ++D    +A+ Q L  
Sbjct: 497 ILILDEATANIDSGTEQAIQQALAA 521

Length = 592

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 47.3 bits (112), Expect = 3e-06
 Identities = 48/189 (25%), Positives = 81/189 (42%), Gaps = 25/189 (13%)

Query: 59   AMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHH--------VDGLD--LS 108
             ++G NG GK+T  K++ G+   +SG    + K  +   S  H         D +D  L+
Sbjct: 1969 GLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLT 2028

Query: 109  SNPLLYMMRCFPGVPEQKLRA----HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK 164
                LY+     GVP +++       + S G++   A +   T SGG K +++ A     
Sbjct: 2029 GREHLYLYARLRGVPAEEIEKVANWSIQSLGLS-LYADRLAGTYSGGNKRKLSTAIALIG 2087

Query: 165  KPHIILLDEPSNHLDLDAVEAL---IQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGK 221
             P ++LLDEP+  +D  A   L   I  ++     +++ SH       S+EE   +    
Sbjct: 2088 CPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH-------SMEECEALCTRL 2140

Query: 222  ATPFHGTFH 230
            A    G F 
Sbjct: 2141 AIMVKGAFQ 2149

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional

 Score = 46.7 bits (112), Expect = 4e-06
 Identities = 52/200 (26%), Positives = 75/200 (37%), Gaps = 85/200 (42%)

Query: 24  PGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS 83
            G  I + ++ S   P G I      FG+        +G +G GKST+++ I    +P+S
Sbjct: 14  GGRTIHALNNVSLHIPAGEI------FGV--------IGASGAGKSTLIRCINLLERPTS 59

Query: 84  GTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA----------H--- 130
           G V               VDG DL++            + E++LR           H   
Sbjct: 60  GRVL--------------VDGQDLTA------------LSEKELRKARRQIGMIFQHFNL 93

Query: 131 LGSFGVTGNLALQPM-----------------------------Y--TLSGGQKSRVAFA 159
           L S  V  N+AL P+                             Y   LSGGQK RVA A
Sbjct: 94  LSSRTVFDNVAL-PLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIA 152

Query: 160 KITFKKPHIILLDEPSNHLD 179
           +     P ++L DE ++ LD
Sbjct: 153 RALASNPKVLLCDEATSALD 172

Length = 343

>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 46.2 bits (109), Expect = 4e-06
 Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 4/65 (6%)

Query: 148 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEALIQGLVL-FQGGILMVSHD 203
           LSGGQ+ R+  A+    KP ++L+DEP   LD  A   VE+LIQ L L  +  +++VSH+
Sbjct: 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHN 210

Query: 204 EHLIS 208
            H +S
Sbjct: 211 LHQVS 215

Length = 261

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 46.7 bits (112), Expect = 5e-06
 Identities = 15/62 (24%), Positives = 32/62 (51%)

Query: 38 YPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVF 97
           P    + K+++      ++I ++G NG GKST+L+++AG  +   G    +  +++   
Sbjct: 16 VPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYL 75

Query: 98 SQ 99
           Q
Sbjct: 76 PQ 77

Length = 556

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 45.5 bits (109), Expect = 5e-06
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 12/70 (17%)

Query: 147 TLSGGQKSRVAFAKITFKKPHIILLDEP--------SNHLDLDAVEALIQGLVLFQGGIL 198
            LSGGQK R++ A+  +    I LLD+P          H+     E  I GL+L     +
Sbjct: 127 NLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHI----FENCILGLLLNNKTRI 182

Query: 199 MVSHDEHLIS 208
           +V+H   L+ 
Sbjct: 183 LVTHQLQLLP 192

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 46.0 bits (109), Expect = 5e-06
 Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 47/179 (26%)

Query: 27  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86
            ++SF   S  Y G       ++  I+    + ++G NG GK+T+L  + G+ + +SG +
Sbjct: 4   VMLSFDKVSAHY-GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI 62

Query: 87  FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR-CFPGVPEQKLRAHLGSFGVTGNLAL--- 142
                    VF     DG D++      +MR     VPE   R       V  NLA+   
Sbjct: 63  ---------VF-----DGKDITDWQTAKIMREAVAIVPEG--RRVFSRMTVEENLAMGGF 106

Query: 143 --------------------------QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS 175
                                     Q   T+SGG++  +A  +    +P ++LLDEPS
Sbjct: 107 FAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPS 165

Length = 237

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score = 46.4 bits (110), Expect = 5e-06
 Identities = 51/189 (26%), Positives = 92/189 (48%), Gaps = 26/189 (13%)

Query: 58  IAMVGPNGIGKSTILKLIAGELQPSS--GTVFRSAKV-------RIAVFSQHHVDGLDLS 108
           +A++GP+G GKST+L  +AG +Q ++  GT+  + +        R    +Q  +    L+
Sbjct: 97  LAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLT 156

Query: 109 SNPLLY---MMRCFPGVPEQ-KLRAH---LGSFGVT--GNLALQPMYT--LSGGQKSRVA 157
               L    ++R    + +Q K+      +   G+T   N  +   +   +SGG++ RV+
Sbjct: 157 VRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVS 216

Query: 158 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV-LFQGGILMVSHDEHLISGSVEELW- 215
            A      P +++LDEP++ LD  A   L+  L  L Q G  +V+   H  S  V +++ 
Sbjct: 217 IAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVT-SMHQPSSRVYQMFD 275

Query: 216 ---VVSEGK 221
              V+SEG+
Sbjct: 276 SVLVLSEGR 284

Length = 659

>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional

 Score = 45.5 bits (108), Expect = 5e-06
 Identities = 54/175 (30%), Positives = 80/175 (45%), Gaps = 30/175 (17%)

Query: 58  IAMVGPNGIGKSTILKLIAGELQPSSGTVF------------RSAKVRIA----VF-SQH 100
           IA++G +G GKST+L ++AG    SSG V               AK+R      VF S  
Sbjct: 39  IALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFM 98

Query: 101 HVDGLDLSSN-PLLYMMRCFPGVPEQKLRAH----LGSFGVTGNLALQPMYTLSGGQKSR 155
            +  L+   N  L  ++R   G   ++ R      L   G+   L   P   LSGG++ R
Sbjct: 99  LIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLPA-QLSGGEQQR 154

Query: 156 VAFAKITFKKPHIILLDEPSNHLDL---DAVEALIQGLVLFQGGIL-MVSHDEHL 206
           VA A+    +P ++  DEP+ +LD    D +  L+  L    G  L +V+HD  L
Sbjct: 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQL 209

Length = 228

>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC

 Score = 44.9 bits (107), Expect = 9e-06
 Identities = 51/197 (25%), Positives = 85/197 (43%), Gaps = 34/197 (17%)

Query: 42  PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE--LQPSSGTV-FRSAKV------ 92
            IL K +N  +      A++GPNG GKST+ K IAG    + +SGT+ F+   +      
Sbjct: 14  EIL-KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPD 72

Query: 93  ---RIAVF--SQHHVDGLDLSSNPLLY----MMRCFPGVPEQKLRAHLGSFGVTGNLALQ 143
              R  +F   Q+  +   +S+   L       R   G     L   L        LAL 
Sbjct: 73  ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLL--KAKLALL 130

Query: 144 PM----------YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF 193
            M             SGG+K R    ++   +P + +LDE  + LD+DA++ + +G+   
Sbjct: 131 GMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRL 190

Query: 194 QG---GILMVSHDEHLI 207
           +      L+++H + L+
Sbjct: 191 REPDRSFLIITHYQRLL 207

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243

>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 45.3 bits (107), Expect = 9e-06
 Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 4/64 (6%)

Query: 143 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEALIQGLVLFQGGILM 199
           +P   LSGGQ+ R+  A+    +P +ILLDEP++ LD  A   +E L++ L      I++
Sbjct: 142 KPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENY-TIVI 200

Query: 200 VSHD 203
           V+H+
Sbjct: 201 VTHN 204

Length = 250

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 45.0 bits (106), Expect = 1e-05
 Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 29/155 (18%)

Query: 58  IAMVGPNGIGKSTILKLIAGELQPSSGTV------------------------FRSAKVR 93
           I+++G +G GKST L+ I    +PS G++                         R  + R
Sbjct: 34  ISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTR 93

Query: 94  IAVFSQH-----HVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTL 148
           + +  QH     H+  L+      + ++        ++   +L   G+      +    L
Sbjct: 94  LTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHL 153

Query: 149 SGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV 183
           SGGQ+ RV+ A+    +P ++L DEP++ LD + V
Sbjct: 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELV 188

Length = 257

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 32/204 (15%)

Query: 27  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86
           P IS +     +     L K++N  +      A++G NG GKST++K+++G  +P+ GT+
Sbjct: 4   PYISMAGIGKSFGPVHAL-KSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI 62

Query: 87  F------------RSAKVRIAVFSQHH--VDGLDLSSNPLLYMMRC----FPGVP----- 123
                         +A++ I +  Q    +D L +  N  LY+ R       GV      
Sbjct: 63  TINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLEN--LYIGRHLTKKVCGVNIIDWR 120

Query: 124 EQKLRAH--LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL--- 178
           E ++RA   L   G+  +L  + +  LS   K  +  AK       +I++DEP++ L   
Sbjct: 121 EMRVRAAMMLLRVGLKVDLD-EKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNK 179

Query: 179 DLDAVEALIQGLVLFQGGILMVSH 202
           ++D +  ++  L      I+ +SH
Sbjct: 180 EVDYLFLIMNQLRKEGTAIVYISH 203

Length = 510

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 7/76 (9%)

Query: 18  PTPDDRPGPP-------IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKST 70
           P   D PG          + F D SF Y       ++++F       +A+VGP G GKST
Sbjct: 317 PDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKST 376

Query: 71  ILKLIAGELQPSSGTV 86
           ++ L+     P SG +
Sbjct: 377 LINLLQRVFDPQSGRI 392

Length = 588

>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 44.6 bits (105), Expect = 1e-05
 Identities = 58/215 (26%), Positives = 93/215 (43%), Gaps = 43/215 (20%)

Query: 26  PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI--AGELQPSS 83
             ++S  D +  Y G     KN+N  +   +  A++GP+G GK+T L+ I    +L P +
Sbjct: 2   TLLLSAQDVNIYY-GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGA 60

Query: 84  ---------------------------GTVFRSAKV--RIAVFSQHHVDGLDLSS-NPLL 113
                                      G VF+       ++VF  + V GL L+      
Sbjct: 61  RVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFD-NVVAGLKLAGIRDRD 119

Query: 114 YMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 173
           ++M     V E+ LR       V   L   P   LSGGQ+ R+  A+    +P I+L+DE
Sbjct: 120 HLME----VAERSLRGAALWDEVKDRLK-TPATGLSGGQQQRLCIARALAVEPEILLMDE 174

Query: 174 PSNHLDLDAVEALIQGLVL---FQGGILMVSHDEH 205
           P++ LD  A  A I+ L+        I++V+H+ H
Sbjct: 175 PTSALD-PASTARIEDLMTDLKKVTTIIIVTHNMH 208

Length = 252

>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 34/177 (19%)

Query: 45  FKNLNFGIDLDSRIAMVGPNGIGKSTILKLI--AGELQPSSGTVFRSAKVRI---AVFSQ 99
            K ++  I+  S +A +GP+G GKST L+L     +L P++       ++RI    ++ +
Sbjct: 19  LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRL---EGEIRIDGRNIYDK 75

Query: 100 H-HVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN-------------LAL--- 142
              VD L  +   +      FP    + +   L   GV  N              AL   
Sbjct: 76  GVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDE 135

Query: 143 ------QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDAVEALIQGL 190
                 +  + LSGGQ+ R+  A+     P ++L+DEP++ LD      VE LI  L
Sbjct: 136 VKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL 192

Length = 250

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 20/41 (48%), Positives = 26/41 (63%)

Query: 148 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 188
           LSGGQK RVA A     +P II+LDE ++ LD +    LI+
Sbjct: 141 LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIK 181

Length = 279

>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 44.2 bits (104), Expect = 2e-05
 Identities = 54/198 (27%), Positives = 88/198 (44%), Gaps = 35/198 (17%)

Query: 38  YPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI------------AGE--LQPSS 83
           Y GG    KN+N  +      A++GP+G GKST L+               GE  L P +
Sbjct: 25  YYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDN 84

Query: 84  GTVFR------SAKVRIA-VFSQHHVDGLDLSSNPLLYMMRCFPGVP-----EQKLRAHL 131
             +          ++RI+ VF + +     +  N + Y +R   GV      E+++   L
Sbjct: 85  VNILSPEVDPIEVRMRISMVFQKPNPFPKSIFEN-VAYGLR-IRGVKRRSILEERVENAL 142

Query: 132 GSFGVTGNLA---LQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEA 185
            +  +   +        + LSGGQ+ R+  A+     P I+L DEP++ LD  A   +E 
Sbjct: 143 RNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEE 202

Query: 186 LIQGLVLFQGGILMVSHD 203
           LI  L   +  IL+V+H+
Sbjct: 203 LISDLK-NKVTILIVTHN 219

Length = 265

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 47/170 (27%), Positives = 75/170 (44%), Gaps = 20/170 (11%)

Query: 28  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           +I F + S  +    +L  N++  ID    + ++GP+G GKST+L+ I    + +SG + 
Sbjct: 1   MIEFKNVSKHFGPTQVL-HNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLI 59

Query: 88  --------RSAKVRI------AVFSQH----HVDGLDLSSNPLLYMMRCFPGVPEQKLRA 129
                        R+       VF Q     H+  L+      L +        E++ R 
Sbjct: 60  VDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARE 119

Query: 130 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
            L   G+       P   LSGGQ+ RVA A+    KP ++L DEP++ LD
Sbjct: 120 LLAKVGLAERAHHYPS-ELSGGQQQRVAIARALAVKPKLMLFDEPTSALD 168

Length = 240

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 65/262 (24%), Positives = 103/262 (39%), Gaps = 61/262 (23%)

Query: 27  PIISFSDAS--FGYPGGPI-LFKNLNFGIDLDSRIAMVGPNGIGKS----TILKLIAGEL 79
           P++S  + S  F   GG +   K ++F I+    +A+VG +G GKS    +IL L+    
Sbjct: 5   PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLL---- 60

Query: 80  QPSSGTVFRSAKVR-----IAVFSQ---HHVDGLDL---------SSNPLLYM------- 115
            PS      S  +      +   S+     V G  +         S NPL  +       
Sbjct: 61  -PSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEV 119

Query: 116 MRCFPGVPEQKLRA-------HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 168
           +R   G+     RA        +G       L   P + LSGGQ+ RV  A     +P +
Sbjct: 120 LRLHRGLSRAAARARALELLELVGIPEPEKRLDAYP-HELSGGQRQRVMIAMALANEPDL 178

Query: 169 ILLDEPSNHLDLDAVEALIQGLVLFQG-------GILMVSHDEHLISGSVEELWVVSEGK 221
           ++ DEP+  LD   V    Q L L +         IL ++HD  ++    + ++V+  G+
Sbjct: 179 LIADEPTTALD---VTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGE 235

Query: 222 -------ATPFHGTFHDYKKML 236
                   T F    H Y + L
Sbjct: 236 IVETGTTETLFAAPQHPYTRKL 257

Length = 534

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 44.6 bits (105), Expect = 3e-05
 Identities = 20/42 (47%), Positives = 31/42 (73%), Gaps = 1/42 (2%)

Query: 147  TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 188
            +LSGGQK R+A A+   ++P I+LLDE ++ LD ++ E LI+
Sbjct: 1358 SLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS-EKLIE 1398

Length = 1466

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 51/203 (25%), Positives = 84/203 (41%), Gaps = 37/203 (18%)

Query: 30  SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS 89
           +  + SF  PG   L   L+          ++G NG GKST+LK++     PS G +   
Sbjct: 13  ALRNVSFRVPG-RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLD 71

Query: 90  AKV-----------RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG 138
           A+            ++A   Q       ++   L+ + R +P          LG FG   
Sbjct: 72  AQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGR-YP------WHGALGRFGAAD 124

Query: 139 N---------LALQPMY-----TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD--- 181
                     + L+P+      +LSGG++ R   A +  +    +LLDEP++ LD+    
Sbjct: 125 REKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQV 184

Query: 182 AVEALIQGLVLFQG-GILMVSHD 203
            V AL+  L   +G  ++ V HD
Sbjct: 185 DVLALVHRLSQERGLTVIAVLHD 207

Length = 265

>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.4 bits (102), Expect = 4e-05
 Identities = 51/201 (25%), Positives = 81/201 (40%), Gaps = 55/201 (27%)

Query: 44  LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFS---QH 100
           + KN+N  I  +S  A++GP+G GKST ++           T+ R   + I  F      
Sbjct: 18  ILKNVNLDIPKNSVTALIGPSGCGKSTFIR-----------TLNRMNDL-IPGFRHEGHI 65

Query: 101 HVDGLDL-------------------SSNP--------LLYMMRC--------FPGVPEQ 125
           ++DG+D+                     NP        + Y +R              E+
Sbjct: 66  YLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEE 125

Query: 126 KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDA 182
            L+A      V   L    +  LSGGQ+ R+  A+     P +IL+DEP + LD      
Sbjct: 126 SLKAAALWDEVKDKLDKSAL-GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTK 184

Query: 183 VEALIQGLVLFQGGILMVSHD 203
           +E LI  L      I++V+H+
Sbjct: 185 IEDLIHKLKE-DYTIVIVTHN 204

Length = 250

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 148 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQG--GI--LMVSHD 203
           LSGGQ+ RVA A+     P ++LLDEP + LD    E L   +   Q   G+  +MV+HD
Sbjct: 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHD 194

Query: 204 E 204
           +
Sbjct: 195 Q 195

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 34/170 (20%)

Query: 62  GPNGIGKSTILKLIAGELQPSSGTVF----------RSA-----KVRIAVFSQH-----H 101
           G +G GKST+L+ I   ++P+SG V           R       + +I++  Q      H
Sbjct: 57  GLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPH 116

Query: 102 VDGLDLSSNPLLYMMRCFPGVPEQKLRAH----LGSFGVTGNLALQPMYTLSGGQKSRVA 157
              L+  +  L        GVP  +        L   G+ G     P   LSGG + RV 
Sbjct: 117 RTVLENVAFGLE-----VQGVPRAEREERAAEALELVGLEGWEHKYP-DELSGGMQQRVG 170

Query: 158 FAKITFKKPHIILLDEPSNHLD----LDAVEALIQGLVLFQGGILMVSHD 203
            A+     P I+L+DE  + LD     +  + L++     Q  I+ ++HD
Sbjct: 171 LARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHD 220

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 43.2 bits (101), Expect = 5e-05
 Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 21/150 (14%)

Query: 48  LNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV-----------FRSAKVRIAV 96
           ++F I     ++++G NG GKST  +LI G  +   G V             + + +I +
Sbjct: 26  VSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGM 85

Query: 97  FSQH---HVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----ALQPMYTLS 149
             Q+      G  +  +    M     G+P +++   +    +  N+      +P   LS
Sbjct: 86  VFQNPDNQFVGATVEDDVAFGMEN--QGIPREEMIKRVDEALLAVNMLDFKTREPA-RLS 142

Query: 150 GGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
           GGQK RVA A I   +P II+LDE ++ LD
Sbjct: 143 GGQKQRVAVAGIIALRPEIIILDESTSMLD 172

Length = 277

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 19/62 (30%), Positives = 38/62 (61%), Gaps = 3/62 (4%)

Query: 148 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQG---GILMVSHDE 204
            SGG+K R    ++   +P + +LDEP + LD+DA++ + +G+   +    G+L+++H +
Sbjct: 145 FSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ 204

Query: 205 HL 206
            L
Sbjct: 205 RL 206

Length = 251

>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 42.0 bits (100), Expect = 5e-05
 Identities = 35/146 (23%), Positives = 66/146 (45%), Gaps = 25/146 (17%)

Query: 65  GIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPG--- 121
           G G++ + + + G   P+SG +               +DG  ++       +R   G   
Sbjct: 36  GNGQTELAEALFGLRPPASGEI--------------TLDGKPVTRRSPRDAIRA--GIAY 79

Query: 122 VPEQKLRAHL-GSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 180
           VPE + R  L     V  N+AL  +  LSGG + +V  A+   + P +++LDEP+  +D+
Sbjct: 80  VPEDRKREGLVLDLSVAENIALSSL--LSGGNQQKVVLARWLARDPRVLILDEPTRGVDV 137

Query: 181 DAVEALIQGLVLF--QG-GILMVSHD 203
            A   + + +      G  +L++S +
Sbjct: 138 GAKAEIYRLIRELADAGKAVLLISSE 163

This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182

>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.0 bits (101), Expect = 6e-05
 Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 8/61 (13%)

Query: 148 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEALIQGLVLFQGG--ILMVSH 202
           LSGGQ+ R+  A+    +P I+LLDEP++ LD  A   +E LIQ L   +G   I++V+H
Sbjct: 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQEL---RGSYTIMIVTH 239

Query: 203 D 203
           +
Sbjct: 240 N 240

Length = 286

>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.6 bits (100), Expect = 6e-05
 Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 4/60 (6%)

Query: 147 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEALIQGLVLFQGGILMVSHD 203
           +LSGGQ+ R+  A+    KP ++LLDEP++ LD  +   +E LI  L   +  I++V+H+
Sbjct: 164 SLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHN 222

Length = 268

>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 43.2 bits (101), Expect = 6e-05
 Identities = 52/201 (25%), Positives = 84/201 (41%), Gaps = 57/201 (28%)

Query: 44  LFKNLNFGIDLDSRIAMVGPNGIGKSTILK-------LIAGELQPSS----GTVFRSAKV 92
           +  +LN  I  +   A +GP+G GKST L+       LI G          GT  RS K+
Sbjct: 97  VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156

Query: 93  -------RIAVFSQHHVDGLDLSSNPLLYMMRCFP---------GVPEQKLRAHLGSFGV 136
                  RI +  Q           P  + M  F          G+ ++K+   +    V
Sbjct: 157 SSLELRTRIGMVFQ----------KPTPFEMSIFDNVAYGPRNNGINDRKILEKI----V 202

Query: 137 TGNLALQPMY------------TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE 184
             +L    ++             LSGGQ+ R+  A+    +P ++L+DEP++ LD  A  
Sbjct: 203 EKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIAT- 261

Query: 185 ALIQGLVL---FQGGILMVSH 202
           A I+ L+L    +  I++V+H
Sbjct: 262 AKIEELILELKKKYSIIIVTH 282

Length = 329

>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.7 bits (100), Expect = 7e-05
 Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 41/168 (24%)

Query: 45  FKNLNFGIDLDSRIAMVGPNGIGKSTILK-------LIAG-------------------- 77
             N+N  I  +S  A++GP+G GKST L+       L+ G                    
Sbjct: 23  LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82

Query: 78  --ELQPSSGTVFRSAK-VRIAVFSQHHVDGLDLSSNPLLYMM---RCFPGVPEQKLRAHL 131
             EL+   G VF++     ++++        ++S  P ++     +    + EQ L+   
Sbjct: 83  ILELRRKIGMVFQTPNPFLMSIYD-------NISYGPKIHGTKDKKKLDEIVEQSLKKSA 135

Query: 132 GSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
               V   L    + +LSGGQ+ R+  A+    +P++IL+DEP++ LD
Sbjct: 136 LWNEVKDKLNTNAL-SLSGGQQQRLCIARTLAIEPNVILMDEPTSALD 182

Length = 254

>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.6 bits (100), Expect = 7e-05
 Identities = 38/163 (23%), Positives = 70/163 (42%), Gaps = 31/163 (19%)

Query: 45  FKNLNFGIDLDSRIAMVGPNGIGKSTILKL------------IAGELQPSSGTVFRS--- 89
            KN+N  I  +   A++GP+G GKST +K             + GE+  +   + +    
Sbjct: 28  LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87

Query: 90  -AKVRIAV---------FSQHHVDGLDLSSNPLLYMMRC---FPGVPEQKLRAHLGSFGV 136
             ++R  +         F Q   D  +++  P ++  +       + E+ L+       V
Sbjct: 88  LVELRKNIGMVFQKGNPFPQSIFD--NVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV 145

Query: 137 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
              L      +LSGGQ+ R+  A+     P ++L+DEP++ LD
Sbjct: 146 KDRLH-TQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187

Length = 259

>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 42.5 bits (100), Expect = 8e-05
 Identities = 48/211 (22%), Positives = 89/211 (42%), Gaps = 51/211 (24%)

Query: 60  MVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPL------- 112
           ++G +G GKST++    G ++   GT+    +V   ++     +  +L +NP        
Sbjct: 57  IIGNSGSGKSTLVTHFNGLIKSKYGTI----QVG-DIYIGDKKNNHELITNPYSKKIKNF 111

Query: 113 ------LYMMRCFP--------------------GVPE----QKLRAHLGSFGVTGNLAL 142
                 + M+  FP                    GV +    +  + +L   G+  +   
Sbjct: 112 KELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLE 171

Query: 143 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGIL 198
           +  + LSGGQK RVA A I   +P I++ DEP+  LD      ++Q L+L        + 
Sbjct: 172 RSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQ-LILDAKANNKTVF 230

Query: 199 MVSHDEHLISGSVEELWVVSEGK----ATPF 225
           +++H    +    +E+ V+ +GK     TP+
Sbjct: 231 VITHTMEHVLEVADEVIVMDKGKILKTGTPY 261

Length = 320

>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 42.3 bits (99), Expect = 8e-05
 Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 8/88 (9%)

Query: 146 YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGG----ILMVS 201
           + LSGGQK RVA A I     + ++LDEP+  LD    E  I             I+MV+
Sbjct: 149 FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVT 208

Query: 202 HDEHLISGSVEELWVVSEGK----ATPF 225
           H+   +    +E+ V+ EGK     +PF
Sbjct: 209 HNMDQVLRIADEVIVMHEGKVISIGSPF 236

Length = 289

>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 42.4 bits (99), Expect = 8e-05
 Identities = 46/193 (23%), Positives = 88/193 (45%), Gaps = 32/193 (16%)

Query: 27  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI----------- 75
           P ++  + + G+ G  +L   ++ G    +  +++GP G GK+T L+ +           
Sbjct: 20  PAMAAVNLTLGFAGKTVL-DQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYR 78

Query: 76  -AGELQPSSGTVFRSAKV-----RIA-VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLR 128
            +G++     ++F    V     R+  +F + +   + +  N +L  +R    VP ++ R
Sbjct: 79  YSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDN-VLAGVRAHKLVPRKEFR 137

Query: 129 ----AHLGSFG----VTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD- 179
               A L   G    V   L+  P + LSGGQ+  +  A+     P ++LLDEP++ LD 
Sbjct: 138 GVAQARLTEVGLWDAVKDRLSDSP-FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDP 196

Query: 180 --LDAVEALIQGL 190
              + +E  I+ L
Sbjct: 197 TTTEKIEEFIRSL 209

Length = 276

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 42.0 bits (99), Expect = 9e-05
 Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 37/189 (19%)

Query: 51  GIDLDSR----IAMVGPNGIGKSTILKLI------------------------AGELQPS 82
           G+ L +     I+++G +G GKST L+ I                         G+L+P+
Sbjct: 24  GVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83

Query: 83  SGTVFRSAKVRIAVFSQH-----HVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVT 137
                +  + R+ +  QH     H+  L+      ++++        ++   +L   G+ 
Sbjct: 84  DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIA 143

Query: 138 GNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV-EAL--IQGLVLFQ 194
                 P + LSGGQ+ RVA A+    +P ++L DEP++ LD + V E L  +Q L    
Sbjct: 144 EKADAYPAH-LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEG 202

Query: 195 GGILMVSHD 203
             +++V+H+
Sbjct: 203 RTMVVVTHE 211

Length = 256

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 42.8 bits (101), Expect = 9e-05
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 15/80 (18%)

Query: 141 ALQPMYTLSGGQKSRVAFA-------KITFKKP-HIILLDEPSNHLDLDAVEALIQGLV- 191
            ++P+ TLSGG++   + A        +  +    ++ LDEP   LD + +E L + L  
Sbjct: 809 EVRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEE 868

Query: 192 ----LFQGGILMVSHDEHLI 207
                 Q  I+++SH E L 
Sbjct: 869 LLSDGRQ--IIIISHVEELK 886

Length = 908

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 45/192 (23%), Positives = 70/192 (36%), Gaps = 62/192 (32%)

Query: 29  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 88
           I  +  +  Y     LF ++         + ++GP+G GKS++L+++     P SGT+  
Sbjct: 3   IQLNGINCFYGAHQALF-DITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL-- 59

Query: 89  SAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG----------SFGVTG 138
                IA    +H    D S  P    +R        +LR ++G             V  
Sbjct: 60  ----NIA---GNH---FDFSKTPSDKAIR--------ELRRNVGMVFQQYNLWPHLTVQQ 101

Query: 139 NLALQPMYT-------------------------------LSGGQKSRVAFAKITFKKPH 167
           NL   P                                  LSGGQ+ RVA A+    +P 
Sbjct: 102 NLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQ 161

Query: 168 IILLDEPSNHLD 179
           ++L DEP+  LD
Sbjct: 162 VLLFDEPTAALD 173

Length = 242

>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 17/33 (51%), Positives = 24/33 (72%)

Query: 147 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
           TLSGGQ+ R+  A+    KP I+L+DEP++ LD
Sbjct: 163 TLSGGQQQRLCIARAIAVKPDILLMDEPASALD 195

Length = 267

>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 147 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDAVEALIQGLVLFQGGILMVSHD 203
           +LSGGQ+ R+  A+    +P +IL+DEP + LD      +E L+  L   Q  I++V+H+
Sbjct: 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHN 209

Length = 264

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 52/201 (25%), Positives = 93/201 (46%), Gaps = 21/201 (10%)

Query: 39   PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------- 91
            P G      LN     +   A +G NG GK+T L ++ G L P+SGTV    K       
Sbjct: 940  PSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLD 999

Query: 92   -VR--IAVFSQHHV--DGLDLSSNPLLYMMRCFPGVPEQKL--RAHLGSFGVTGNLALQP 144
             VR  + +  QH++    L ++ + L Y         E +L   A L   G+      + 
Sbjct: 1000 AVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRN-EE 1058

Query: 145  MYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGG--ILMVSH 202
               LSGG + +++ A        +++LDEP++ +D  +  ++   L+ ++ G  I+M +H
Sbjct: 1059 AQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTH 1118

Query: 203  --DEHLISGSVEELWVVSEGK 221
              DE  + G  + + ++S+G+
Sbjct: 1119 HMDEADLLG--DRIAIISQGR 1137

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 143 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEALIQGL 190
           +    LSGGQ+ R+  A+    KP ++L+DEP++ LD  +   +E LI  L
Sbjct: 145 KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITEL 195

Length = 253

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 6/86 (6%)

Query: 147 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD----LDAVEALIQGLVLFQGGILMVSH 202
           +LSGG++ RV  A+     P  ILLDEP   +D    +D ++ +I+ L     G+L+  H
Sbjct: 137 SLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVID-IKRIIEHLRDSGLGVLITDH 195

Query: 203 DEHLISGSVEELWVVSEGKATPFHGT 228
           +        E  ++VS+G     HGT
Sbjct: 196 NVRETLAVCERAYIVSQGHLIA-HGT 220

Length = 241

>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 16/34 (47%), Positives = 24/34 (70%)

Query: 146 YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
           Y+LSGGQ+ R+  A+    +P +IL+DEP + LD
Sbjct: 153 YSLSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186

Length = 269

>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 143 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDAVEALIQGL 190
           Q  Y+LSGGQ+ R+  A+    +P ++LLDEP + LD      +E LI  L
Sbjct: 152 QSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL 202

Length = 260

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 11/88 (12%)

Query: 148 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV-LFQGG--ILMVSHDE 204
           LSGG++ R+AFA      P ++  DEP++ LD     +++Q L  L Q G  I+   H  
Sbjct: 167 LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQP 226

Query: 205 HLISGSVEELW----VVSEGKATPFHGT 228
              S  + EL+    +++EG+   + G+
Sbjct: 227 ---SSELFELFDKIILMAEGR-VAYLGS 250

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 3/80 (3%)

Query: 147 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEALIQGLVLFQGGILMVSHD 203
           +LSGG + +V   +    +P I++LDEP+  +D+ A   +  LI  L     GI+++S +
Sbjct: 391 SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSE 450

Query: 204 EHLISGSVEELWVVSEGKAT 223
              + G  + + V+S G   
Sbjct: 451 MPELLGITDRILVMSNGLVA 470

Length = 491

>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 54/210 (25%), Positives = 86/210 (40%), Gaps = 40/210 (19%)

Query: 27  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILK-------LIAG-- 77
           P I     +F Y    +L KN+N         A++GP+G GKST+L+       +++G  
Sbjct: 3   PKIKIRGVNFFYHKHQVL-KNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGAR 61

Query: 78  --------------------ELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR 117
                                L+   G VF+        F +   D +      L    +
Sbjct: 62  LEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNP----FPKSIFDNVAFGPRMLGTTAQ 117

Query: 118 C-FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 176
                V E+ LR       V  NL    +  LSGGQ+ R+  A++   +P +IL+DEP +
Sbjct: 118 SRLDEVVEKSLRQAALWDEVKDNLHKSGL-ALSGGQQQRLCIARVLAIEPEVILMDEPCS 176

Query: 177 HLDLDA---VEALIQGLVLFQGGILMVSHD 203
            LD  +   +E L+Q L      I +V+H+
Sbjct: 177 ALDPVSTMRIEELMQELKQNY-TIAIVTHN 205

Length = 251

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 14/159 (8%)

Query: 43  ILFKNLNFGIDLDSRIAMV-GPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIA-VFSQH 100
           +L ++++  +    ++ +V G  G GKST+L+ +  + + S G V+  A+  IA V  Q 
Sbjct: 674 VLLRDVSVSV-PRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVW--AERSIAYVPQQA 730

Query: 101 HVDGLDLSSNPLLY----MMRCFPGVPEQKLRAHLGSFGVTGNLALQ---PMYTLSGGQK 153
            +    +  N L +      R    V   +L A L   G  G L  +       LSGGQK
Sbjct: 731 WIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLG--GGLETEIGEKGVNLSGGQK 788

Query: 154 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL 192
           +RV+ A+  +    + LLD+P + LD    E +++   L
Sbjct: 789 ARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFL 827

Length = 1560

>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 6/71 (8%)

Query: 143 QPMYTLSGGQKSRVAFAKITFKK---PHIILLDEPSNHLDLDAVEAL---IQGLVLFQGG 196
           QP  TLSGG+  R+  AK   K+     + +LDEP+  L  D ++ L   +Q LV     
Sbjct: 825 QPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNT 884

Query: 197 ILMVSHDEHLI 207
           ++++ H+  +I
Sbjct: 885 VVVIEHNLDVI 895

This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925

>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 53/214 (24%), Positives = 79/214 (36%), Gaps = 57/214 (26%)

Query: 19  TPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKL---- 74
            P    G  +I   D +  Y G      +++  I  +   AM+GP+G GKST L+     
Sbjct: 30  DPAASSGETVIEARDLNVFY-GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRM 88

Query: 75  --------IAGELQPSSGTVFRSA------KVRIAVFSQHHVDGLDLSSNPLLYMMRCFP 120
                   + GEL      V+ +       + RI +  Q          NP       FP
Sbjct: 89  NDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQK--------PNP-------FP 133

Query: 121 GVPEQKLRAHLGSFGVTGNL-----------AL---------QPMYTLSGGQKSRVAFAK 160
                 +   L   G  G++           AL              LSGGQ+ R+  A+
Sbjct: 134 KSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIAR 193

Query: 161 ITFKKPHIILLDEPSNHLDLDA---VEALIQGLV 191
                P +IL+DEP++ LD  A   +E LI+ L 
Sbjct: 194 AIAPDPEVILMDEPASALDPVATSKIEDLIEELA 227

Length = 285

>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.4 bits (94), Expect = 4e-04
 Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 38/188 (20%)

Query: 47  NLNFGIDLDSRIAMVGPNGIGKSTILKL----------------IAGE---------LQP 81
           ++N  I+ +   A++G +G GKST L+                 I G+         L+ 
Sbjct: 20  DINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79

Query: 82  SSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLR---AHLGSFGVTG 138
           + G VF+   V +    +      ++S  P L+ M       E  +      +G F    
Sbjct: 80  NVGMVFQQPNVFVKSIYE------NISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK 133

Query: 139 NLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDAVEALIQGLVLFQG 195
           +   Q    LSGGQ+ R+  A+    KP ++LLDEP++ LD      +E L++ L     
Sbjct: 134 DKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS-HNL 192

Query: 196 GILMVSHD 203
            ++MV+H+
Sbjct: 193 SMIMVTHN 200

Length = 246

>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 4/59 (6%)

Query: 148 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEALIQGLVLFQGGILMVSHD 203
           LSGGQ+ R+  A+    KP +IL+DEP++ LD  +   +E LI+ L   +  I++V+H+
Sbjct: 149 LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHN 206

Length = 252

>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 15/32 (46%), Positives = 23/32 (71%)

Query: 148 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
           LSGGQ+ R+  A+    KP I+L+DEP+ ++D
Sbjct: 150 LSGGQRQRLVIARALAMKPKILLMDEPTANID 181

Length = 253

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 40.4 bits (94), Expect = 6e-04
 Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 148 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 188
           LSGGQK R++ A+   + P I++LDE ++ LD +  E L+Q
Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSLD-NKSEYLVQ 619

Length = 1466

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 3/81 (3%)

Query: 144 PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEALIQGLVLFQGGILMV 200
           P+  LSGG + +   AK+    P +++LDEP+  +D+ A   +  LI  L      I++V
Sbjct: 400 PIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVV 459

Query: 201 SHDEHLISGSVEELWVVSEGK 221
           S +   + G  + + V+ EGK
Sbjct: 460 SSELAEVLGLSDRVLVIGEGK 480

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|222036 pfam13304, AAA_21, AAA domain

 Score = 39.4 bits (91), Expect = 7e-04
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 6/67 (8%)

Query: 148 LSGGQKSRVAFAKI---TFKKPHIILLDEPSNHLDLDAVEALIQ---GLVLFQGGILMVS 201
           +S G K  +A          K  ++L+DEP N L    +  L++    L      ++  +
Sbjct: 190 ISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTT 249

Query: 202 HDEHLIS 208
           H   L+ 
Sbjct: 250 HSPLLLD 256

Length = 256

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 39.8 bits (93), Expect = 8e-04
 Identities = 16/47 (34%), Positives = 25/47 (53%)

Query: 40 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86
          G  +L  N    I+   ++ +VG NG GKST+L L+  E+    G+ 
Sbjct: 12 GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSY 58

Length = 638

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score = 40.0 bits (93), Expect = 8e-04
 Identities = 45/228 (19%), Positives = 85/228 (37%), Gaps = 56/228 (24%)

Query: 1    MGHVDEVVNDPDYKFEFPTPDDRPGPP-------IISFSDASFGY-PGGPILFKNLNFGI 52
            +  V+ V N  D   E     +   P         I F D    Y PG P +   L+F +
Sbjct: 1200 LNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFV 1259

Query: 53   DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPL 112
                ++ +VG  G GKS++L  +   ++   G +               +D  D++   L
Sbjct: 1260 SPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIM--------------IDDCDVAKFGL 1305

Query: 113  LYMMRCFPGVPEQKL--------------------------RAHL------GSFGVTGNL 140
              + R    +P+  +                          RAH+        FG+   +
Sbjct: 1306 TDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEV 1365

Query: 141  ALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 188
            + +     S GQ+  ++ A+   ++  I++LDE +  +D+   ++LIQ
Sbjct: 1366 S-EGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDV-RTDSLIQ 1411

Length = 1495

>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.2 bits (91), Expect = 8e-04
 Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 35/186 (18%)

Query: 51  GIDLDSR----IAMVGPNGIGKSTILKL------------IAGELQPSSGTVFRSAKVRI 94
           GI LD       A++GP+G GKST L+             I GE++     ++ S    +
Sbjct: 22  GISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81

Query: 95  A-------VFSQHHVDGLDLSSNPLLYMMRCFPGVPE-----QKLRAHLGSFGV---TGN 139
                   VF Q       +  N + Y ++   GV +     Q++   L    +   T +
Sbjct: 82  ELRKEVGMVFQQPTPFPFSVYDN-VAYGLK-IAGVKDKELIDQRVEESLKQAAIWKETKD 139

Query: 140 LALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGI 197
              +     SGGQ+ R+  A+    +P ++LLDEP++ LD  +   + + L+    Q   
Sbjct: 140 NLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTF 199

Query: 198 LMVSHD 203
           +MV+H+
Sbjct: 200 IMVTHN 205

Length = 251

>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.1 bits (91), Expect = 8e-04
 Identities = 44/196 (22%), Positives = 84/196 (42%), Gaps = 47/196 (23%)

Query: 44  LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVD 103
           +   +N  I  ++  A++GP+G GKST+L++    ++     ++  A+V   V+    +D
Sbjct: 18  VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIE-----LYPEARVSGEVY----LD 68

Query: 104 GLDLSSNPLLYMMR----------------CFPGVP---------------EQKLRAHLG 132
           G D+    ++ + R                 F  V                ++++R  L 
Sbjct: 69  GQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALE 128

Query: 133 SFGV---TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQG 189
              +     +    P   LSGGQ+ R+  A+    +P ++L DEP+ +LD +   A I+ 
Sbjct: 129 KAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENT-AKIES 187

Query: 190 LVL---FQGGILMVSH 202
           L L       I++V+H
Sbjct: 188 LFLELKKDMTIVLVTH 203

Length = 250

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 39.4 bits (93), Expect = 0.001
 Identities = 51/246 (20%), Positives = 91/246 (36%), Gaps = 62/246 (25%)

Query: 18  PTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSR----IAMVGPNGIGKSTILK 73
             P++  G P++   + S     G    ++    +    R    + + G  G G++ + +
Sbjct: 253 EPPEEGIGEPVLEVRNLS-----GGGKVRD----VSFTVRAGEILGIAGLVGAGRTELAR 303

Query: 74  LIAGELQPSSGTV--------FRSAKVRIA--------------VFSQHHVDGLDLSSNP 111
            + G    SSG +         RS +  I               +     +   +++   
Sbjct: 304 ALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSI-AENITLAS 362

Query: 112 LLYMMRCFPGVPEQKLRAHL----GSFGVTGNLALQPMYTLSGG--QKSRVAFAKITFKK 165
           L    R    +  +K RA          +      QP+ TLSGG  QK  V  A+     
Sbjct: 363 LRRFSRRG-LIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQK--VVLARWLATD 419

Query: 166 PHIILLDEPSNHLDLDA---VEALIQGLVLFQGGILMVSHDEHLISGSVEELW------- 215
           P +++LDEP+  +D+ A   +  LI+ L      ILM+S +       + EL        
Sbjct: 420 PKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSE-------LPELLGLSDRIL 472

Query: 216 VVSEGK 221
           V+ EG+
Sbjct: 473 VMREGR 478

Length = 500

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 133 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEALIQG 189
           +  +  N A Q   TLSGG + +V  AK     P ++++DEP+  +D+ A   +  LI+ 
Sbjct: 389 ALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRS 448

Query: 190 LVLFQGGILMVSHDEHLISGSVEELWVVSEGK 221
           +      +L +S D   I    + + V+ +G+
Sbjct: 449 IAAQNVAVLFISSDLEEIEQMADRVLVMHQGE 480

Length = 510

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 39.6 bits (92), Expect = 0.001
 Identities = 19/43 (44%), Positives = 26/43 (60%)

Query: 44  LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86
           ++K+LNF +      A VG +G GKSTILKLI     P+ G +
Sbjct: 400 IYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDI 442

Length = 1466

>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.2 bits (91), Expect = 0.001
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 148 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
           LSGGQ+ R+  A+    KP +IL+DEP++ LD
Sbjct: 148 LSGGQQQRLCIARTIAVKPDVILMDEPTSALD 179

Length = 251

>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 143 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEALIQGL 190
           +P   LSGGQ+ R+  A+     P +IL+DEP + LD  A   VE LI  L
Sbjct: 159 EPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDEL 209

Length = 267

>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 39.2 bits (91), Expect = 0.001
 Identities = 52/195 (26%), Positives = 81/195 (41%), Gaps = 35/195 (17%)

Query: 27  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI--AGELQ-PSS 83
           P I   D SF Y       + ++  I  +   A++GP+G GKST +K +    EL+ P  
Sbjct: 6   PAIKVKDLSF-YYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVK 64

Query: 84  --------GTVFRSAKVRI--------AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKL 127
                   G      ++ I         VF + +   + +  N + Y +R    +P+  L
Sbjct: 65  VEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYEN-VAYGVRISAKLPQADL 123

Query: 128 RAHLGSFGVTGNLAL---------QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 178
              + S       AL         +    LSGGQ+ R+  A+    KP ++L+DEP + L
Sbjct: 124 DEIVES--ALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSAL 181

Query: 179 DLDA---VEALIQGL 190
           D  A   VE LI  L
Sbjct: 182 DPIATMKVEELIHSL 196

Length = 259

>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 42 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG 77
           IL K LN  I+     A++GPNG GKST+ K+IAG
Sbjct: 21 EIL-KGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG 55

Length = 252

>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 12/74 (16%)

Query: 143 QPMYTLSGGQKSRVAFAKITF------KKPHIILLDEPSNHLDLDAVEALIQGL--VLFQ 194
           +P+ +LSGG+  R+   K+ +      KKP + +LDEP+  L    ++ALI  L  +  Q
Sbjct: 805 RPLSSLSGGEIQRL---KLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQ 861

Query: 195 G-GILMVSHDEHLI 207
           G  ++++ H+ H++
Sbjct: 862 GHTVVIIEHNMHVV 875

Length = 1809

>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 17/73 (23%)

Query: 147 TLSGGQKSRVAFAK--------ITFKKPHIILLDEPSNHL---DLDAVEALIQGLVLFQG 195
           TLSGG++ R A AK        IT+      +LDEPS  L   D   +  +I+ L     
Sbjct: 476 TLSGGEQERTALAKHLGAELIGITY------ILDEPSIGLHPQDTHKLINVIKKLRDQGN 529

Query: 196 GILMVSHDEHLIS 208
            +L+V HDE +IS
Sbjct: 530 TVLLVEHDEQMIS 542

Length = 1809

>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 8/84 (9%)

Query: 145 MY--TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV-----LFQGGI 197
           MY    SGG + RV  A     +P +++ DEP+  LD+  V+A I  L+      F   I
Sbjct: 157 MYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDV-TVQAQIMTLLNELKREFNTAI 215

Query: 198 LMVSHDEHLISGSVEELWVVSEGK 221
           +M++HD  +++G  +++ V+  G+
Sbjct: 216 IMITHDLGVVAGICDKVLVMYAGR 239

Length = 330

>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 3/46 (6%)

Query: 148 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDAVEALIQGL 190
           LSGGQ+ R+  A+    +P ++L+DEP++ LD      +E LIQ L
Sbjct: 147 LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQEL 192

Length = 250

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 148 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV----EALIQGLVLFQGGILMVSH 202
           LSGG+K RV  A+   K+P + L DEP+  LD         AL + +      +++ SH
Sbjct: 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH 227

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 28/164 (17%)

Query: 51  GIDLDSR----IAMVGPNGIGKSTILKLIAGELQPS---------SGTVFRSAKVR---- 93
           GIDL+ R    + + G NG GKST++K+++G + P          SG+  +++ +R    
Sbjct: 19  GIDLEVRPGECVGLCGENGAGKSTLMKILSG-VYPHGTWDGEIYWSGSPLKASNIRDTER 77

Query: 94  --IAVFSQHH--VDGLDLSSNPLLYMMRCFPGV----PEQKLRAH--LGSFGVTGNLALQ 143
             I +  Q    V  L ++ N  L      PG         LRA   L    +  +   +
Sbjct: 78  AGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTR 137

Query: 144 PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALI 187
           P+    GGQ+  V  AK   K+  +++LDEPS+ L     E L+
Sbjct: 138 PVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILL 181

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 11/100 (11%)

Query: 148 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQG----GILMVSHD 203
           LSGG   RV  A     +P +++ DEP+  LD+     +I+ L+  Q      +++++HD
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHD 213

Query: 204 EHLISGSVEEL------WVVSEGKATP-FHGTFHDYKKML 236
             L++ +  ++       VV  GKA   F    H Y + L
Sbjct: 214 LALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRHPYTQAL 253

Length = 326

>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 3/51 (5%)

Query: 143 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEALIQGL 190
           +  + LSGGQ+ R+  A+    +P ++LLDEP++ LD  +   +E LI  L
Sbjct: 164 ENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITEL 214

Length = 272

>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 3/46 (6%)

Query: 148 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEALIQGL 190
           LSGGQ+ R+  A+     P +IL+DEP++ LD  A   +E LI+ L
Sbjct: 201 LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEEL 246

Length = 305

>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 4/59 (6%)

Query: 148 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDAVEALIQGLVLFQGGILMVSHD 203
           LSGGQ+ R+  A+    KP ++L+DEP + LD      VE L   L   Q  I+MV+H+
Sbjct: 162 LSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHN 219

Length = 274

>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 143 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEALIQGL 190
               +LSGGQ+ R+  A+     P +IL+DEP + LD  A   +E LI+ L
Sbjct: 145 DSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDL 195

Length = 253

>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 12/76 (15%)

Query: 147 TLSGGQKS------RVAFAKITFKKPHIILLDEPSNHLDLDAVEAL---IQGLVLFQGGI 197
           +LSGG+K+      RVA A+       ++++DEP+  LD D    L   I+  +     I
Sbjct: 801 SLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDI 860

Query: 198 ---LMVSHDEHLISGS 210
              +M+SH   L+S +
Sbjct: 861 PQVIMISHHRELLSVA 876

Length = 895

>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 143 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDAVEALIQGL 190
           +P   LSGGQ+ R+  A+    +P ++L+DEP + LD     A+E LI  L
Sbjct: 144 KPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL 194

Length = 258

>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 143 QPMYTLSGGQKSRVAFAKITFKK---PHIILLDEPSNHLDLDAVEALI---QGLVLFQGG 196
           QP  TLSGG+  R+  AK   K+     + +LDEP+  L    V+ L+   Q LV     
Sbjct: 165 QPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNT 224

Query: 197 ILMVSHDEHLI 207
           ++++ H+  +I
Sbjct: 225 VVVIEHNLDVI 235

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 3/82 (3%)

Query: 143 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF-QGG--ILM 199
           Q +  LSGG + +VA A+    +P +++LDEP+  +D+ A + + Q +  F   G  I++
Sbjct: 391 QAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIIL 450

Query: 200 VSHDEHLISGSVEELWVVSEGK 221
           VS +   + G  + + V+ EG+
Sbjct: 451 VSSEMPEVLGMSDRILVMHEGR 472

Length = 501

>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 4/59 (6%)

Query: 148 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEALIQGLVLFQGGILMVSHD 203
           LSGGQ+ R+  A+    +P ++L+DEP++ LD  A   +E LI  L   +  I++V+H+
Sbjct: 150 LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHN 207

Length = 253

>gnl|CDD|129694 TIGR00606, rad50, rad50

 Score = 38.5 bits (89), Expect = 0.003
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 18/87 (20%)

Query: 137  TGNLALQPMYTLSGGQKS------RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL 190
             G+ AL      S GQK       R+A A+       II LDEP+ +LD + +E+L   L
Sbjct: 1189 KGDTALDMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHAL 1248

Query: 191  VL----------FQGGILMVSHDEHLI 207
            V           FQ  +L+++HDE  +
Sbjct: 1249 VEIIKSRSQQRNFQ--LLVITHDEDFV 1273

All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1311

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	239
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
PRK13537	306	nodulation ABC transporter NodI; Provisional	100.0
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
PRK13536	340	nodulation factor exporter subunit NodI; Provision	100.0
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	100.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	100.0
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	100.0
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	100.0
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	100.0
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	100.0
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	100.0
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	100.0
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	100.0
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	100.0
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	100.0
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	100.0
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	100.0
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	100.0
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	100.0
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	100.0
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	100.0
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	100.0
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	100.0
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	100.0
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	100.0
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	100.0
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	100.0
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	100.0
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	100.0
COG0488	530	Uup ATPase components of ABC transporters with dup	100.0
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	100.0
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	100.0
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	100.0
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	100.0
COG0488	530	Uup ATPase components of ABC transporters with dup	100.0
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	100.0
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	100.0
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	100.0
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	100.0
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	100.0
COG0411	250	LivG ABC-type branched-chain amino acid transport	100.0
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	100.0
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	100.0
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	100.0
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	100.0
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	100.0
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	100.0
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	100.0
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	100.0
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	100.0
PRK10908	222	cell division protein FtsE; Provisional	100.0
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	100.0
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	100.0
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	100.0
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	100.0
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	100.0
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03269	210	ABC_putative_ATPase This subfamily is involved in	100.0
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	100.0
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	100.0
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	100.0
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	100.0
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	100.0
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	100.0
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	100.0
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	100.0
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	100.0
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	100.0
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	100.0
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	100.0
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	100.0
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	100.0
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	100.0
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	100.0
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	100.0
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	100.0
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	100.0
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	100.0
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	100.0
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	100.0
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	100.0
PRK09984	262	phosphonate/organophosphate ester transporter subu	100.0
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	100.0
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	100.0
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	100.0
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	100.0
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	100.0
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	100.0
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	100.0
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	100.0
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	100.0
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	100.0
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	100.0
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	100.0
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	100.0
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG0410	237	LivF ABC-type branched-chain amino acid transport	100.0
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	100.0
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	100.0
COG4152	300	ABC-type uncharacterized transport system, ATPase	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	100.0
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	100.0
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	100.0
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	100.0
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	100.0
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	100.0
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	100.0
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	100.0
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03299	235	ABC_ModC_like Archeal protein closely related to M	100.0
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	100.0
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	100.0
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	100.0
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	100.0
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	100.0
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	100.0
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	100.0
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	100.0
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	100.0
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	100.0
COG4988	559	CydD ABC-type transport system involved in cytochr	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	100.0
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	100.0
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	100.0
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	100.0
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG4598	256	HisP ABC-type histidine transport system, ATPase c	100.0
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	100.0
COG4559	259	ABC-type hemin transport system, ATPase component	100.0
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	100.0
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	100.0
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	100.0
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	100.0
COG4987	573	CydC ABC-type transport system involved in cytochr	100.0
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	100.0
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	100.0
cd03215	182	ABC_Carb_Monos_II This family represents domain II	100.0
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	100.0
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	100.0
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	100.0
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
cd03216	163	ABC_Carb_Monos_I This family represents the domain	100.0
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	100.0
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	100.0
cd03234	226	ABCG_White The White subfamily represents ABC tran	100.0
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	100.0
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	100.0
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	100.0
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	100.0
COG4181	228	Predicted ABC-type transport system involved in ly	100.0
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	100.0
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	100.0
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	100.0
cd03246	173	ABCC_Protease_Secretion This family represents the	100.0
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
PRK13546	264	teichoic acids export protein ATP-binding subunit;	100.0
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	100.0
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	100.0
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	100.0
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	100.0
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	100.0
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	100.0
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	100.0
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	100.0
PRK03695	248	vitamin B12-transporter ATPase; Provisional	100.0
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	100.0
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	100.0
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	100.0
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	100.0
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	100.0
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	100.0
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	100.0
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	100.0
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	100.0
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	100.0
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	100.0
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	100.0
COG4525	259	TauB ABC-type taurine transport system, ATPase com	100.0
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	100.0
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
PRK10522	547	multidrug transporter membrane component/ATP-bindi	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	100.0
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
COG4619	223	ABC-type uncharacterized transport system, ATPase	100.0
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	100.0
COG3845	501	ABC-type uncharacterized transport systems, ATPase	100.0
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	100.0
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	100.0
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
KOG0927	614	consensus Predicted transporter (ABC superfamily)	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
PLN03211	659	ABC transporter G-25; Provisional	100.0
COG4674	249	Uncharacterized ABC-type transport system, ATPase	100.0
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	100.0
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	100.0
KOG0062	582	consensus ATPase component of ABC transporters wit	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
COG4586	325	ABC-type uncharacterized transport system, ATPase	100.0
PRK10535	648	macrolide transporter ATP-binding /permease protei	100.0
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	100.0
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	100.0
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	100.0
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	100.0
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	100.0
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	100.0
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	100.0
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
KOG0062	582	consensus ATPase component of ABC transporters wit	100.0
COG4133	209	CcmA ABC-type transport system involved in cytochr	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	100.0
KOG0927	614	consensus Predicted transporter (ABC superfamily)	100.0
COG4136	213	ABC-type uncharacterized transport system, ATPase	100.0
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	100.0
KOG0054	1381	consensus Multidrug resistance-associated protein/	100.0
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	100.0
KOG0054	1381	consensus Multidrug resistance-associated protein/	100.0
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	100.0
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	100.0
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	100.0
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	100.0
PF00005	137	ABC_tran: ABC transporter This structure is on hol	100.0
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	100.0
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.97
COG4178	604	ABC-type uncharacterized transport system, permeas	99.97
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.97
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.97
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.97
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.97
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.97
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.97
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.97
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.96
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.96
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.96
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.96
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.96
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.95
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	99.95
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	99.95
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.95
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.94
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.94
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.93
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.93
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	99.93
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.92
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.91
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.9
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.89
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.89
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.88
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.88
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.88
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	99.87
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.84
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.84
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.83
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.83
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.83
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.83
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	99.81
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	99.78
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.77
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	99.74
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	99.73
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	99.72
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	99.69
PRK13695	174	putative NTPase; Provisional	99.68
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	99.65
PRK00409	782	recombination and DNA strand exchange inhibitor pr	99.61
cd01128	249	rho_factor Transcription termination factor rho is	99.58
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	99.56
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	99.56
PHA02562	562	46 endonuclease subunit; Provisional	99.55
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	99.53
PRK08533	230	flagellar accessory protein FlaH; Reviewed	99.52
PRK10869	553	recombination and repair protein; Provisional	99.52
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	99.51
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	99.5
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.49
PRK01156	895	chromosome segregation protein; Provisional	99.49
PRK03918	880	chromosome segregation protein; Provisional	99.47
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	99.47
COG3910	233	Predicted ATPase [General function prediction only	99.45
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	99.45
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.45
PRK10246	1047	exonuclease subunit SbcC; Provisional	99.42
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.4
PRK00064	361	recF recombination protein F; Reviewed	99.38
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.37
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	99.32
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.3
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.28
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	99.27
PRK13830	818	conjugal transfer protein TrbE; Provisional	99.25
PRK02224	880	chromosome segregation protein; Provisional	99.25
PRK06067	234	flagellar accessory protein FlaH; Validated	99.23
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	99.16
TIGR00611	365	recf recF protein. All proteins in this family for	99.15
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	99.12
smart00382	148	AAA ATPases associated with a variety of cellular	99.1
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	99.05
PRK14079	349	recF recombination protein F; Provisional	99.04
PRK05399	854	DNA mismatch repair protein MutS; Provisional	99.04
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	99.01
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	99.01
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	98.98
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	98.96
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.92
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	98.91
COG4637	373	Predicted ATPase [General function prediction only	98.9
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	98.85
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.85
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.84
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	98.74
PRK07594	433	type III secretion system ATPase SsaN; Validated	98.73
TIGR00767	415	rho transcription termination factor Rho. Members	98.72
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.72
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	98.71
PF00488	235	MutS_V: MutS domain V C-terminus.; InterPro: IPR00	98.71
PRK13891	852	conjugal transfer protein TrbE; Provisional	98.7
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.69
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	98.66
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	98.61
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	98.6
PF13558	90	SbcCD_C: Putative exonuclease SbcCD, C subunit; PD	98.6
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.6
PRK09862	506	putative ATP-dependent protease; Provisional	98.6
PRK13898	800	type IV secretion system ATPase VirB4; Provisional	98.58
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	98.55
PRK08149	428	ATP synthase SpaL; Validated	98.53
PRK06315	442	type III secretion system ATPase; Provisional	98.51
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	98.5
TIGR03496	411	FliI_clade1 flagellar protein export ATPase FliI.	98.5
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	98.49
PRK09099	441	type III secretion system ATPase; Provisional	98.48
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.47
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.47
TIGR01070	840	mutS1 DNA mismatch repair protein MutS.	98.46
PRK00300	205	gmk guanylate kinase; Provisional	98.44
TIGR03497	413	FliI_clade2 flagellar protein export ATPase FliI.	98.44
PRK09825	176	idnK D-gluconate kinase; Provisional	98.44
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.43
PRK05922	434	type III secretion system ATPase; Validated	98.43
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.4

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-59  Score=380.40  Aligned_cols=202  Identities=22%  Similarity=0.348  Sum_probs=172.6

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEE
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI   94 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~   94 (239)
                      ++|+++|++++| |+..+|++||++|++||+++|+||||||||||||||+||.+|++|+|++++.            ..+
T Consensus         1 ~mi~i~~l~K~f-g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v   79 (240)
T COG1126           1 MMIEIKNLSKSF-GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV   79 (240)
T ss_pred             CeEEEEeeeEEe-CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence            479999999999 4667999999999999999999999999999999999999999999999873            358


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHh---CCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRC---FPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH  167 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~  167 (239)
                      |++||++..  .+..+.++++...   ..+    ..++++.++|+++|+.+ .++.+|.+|||||||||||||||+.+|+
T Consensus        80 GmVFQ~fnL--FPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~-ka~~yP~qLSGGQqQRVAIARALaM~P~  156 (240)
T COG1126          80 GMVFQQFNL--FPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLAD-KADAYPAQLSGGQQQRVAIARALAMDPK  156 (240)
T ss_pred             Ceecccccc--cccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchh-hhhhCccccCcHHHHHHHHHHHHcCCCC
Confidence            999998643  3445566655421   112    23456788999999985 5678899999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHH---HHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          168 IILLDEPSNHLDLDAVEALIQ---GLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       168 llllDEPt~~LD~~~~~~l~~---~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      ++|+|||||+|||+...++++   .|++.|.|+|+|||++.|+.++||||++|++|+++ ..|+++++.
T Consensus       157 vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~ii-e~g~p~~~f  224 (240)
T COG1126         157 VMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKII-EEGPPEEFF  224 (240)
T ss_pred             EEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEE-EecCHHHHh
Confidence            999999999999998877655   45566789999999999999999999999999987 567888774

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=2.2e-56  Score=375.78  Aligned_cols=202  Identities=32%  Similarity=0.497  Sum_probs=171.5

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV   96 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~   96 (239)
                      +|+++|++++|+ ++.+++|+||++++|++++|+||||||||||||+|+|+++|.+|+|..+++           ..++|
T Consensus         2 ~L~~~~ls~~y~-~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~   80 (258)
T COG1120           2 MLEVENLSFGYG-GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY   80 (258)
T ss_pred             eeEEEEEEEEEC-CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence            689999999995 678999999999999999999999999999999999999999999999884           36999


Q ss_pred             EeeccCCCCCCCCcHHHHHHHh--------CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376           97 FSQHHVDGLDLSSNPLLYMMRC--------FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI  168 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~l  168 (239)
                      +||.+.....++......+.+.        ....+.+.+.++|+.+++. +++++++.+|||||||||.|||||+++|++
T Consensus        81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~-~la~r~~~~LSGGerQrv~iArALaQ~~~i  159 (258)
T COG1120          81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLE-HLADRPVDELSGGERQRVLIARALAQETPI  159 (258)
T ss_pred             eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcH-HHhcCcccccChhHHHHHHHHHHHhcCCCE
Confidence            9999744333332222211110        1122345688899999997 477899999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376          169 ILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       169 lllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                      |||||||++||...+.++++.+++.    +.|||+|+||++.+.++||++++|++|+++ ..|++++.
T Consensus       160 LLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~-a~G~p~ev  226 (258)
T COG1120         160 LLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIV-AQGTPEEV  226 (258)
T ss_pred             EEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEE-eecCcchh
Confidence            9999999999999998888877654    569999999999999999999999999997 67887765

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.3e-56  Score=372.37  Aligned_cols=204  Identities=26%  Similarity=0.399  Sum_probs=173.6

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------eEEEEEe
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------VRIAVFS   98 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------~~~~~~~   98 (239)
                      ++++++|+++.|++. .+|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+.        .+|||+|
T Consensus         3 ~~i~v~nl~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVP   81 (254)
T COG1121           3 PMIEVENLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVP   81 (254)
T ss_pred             cEEEEeeeEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcC
Confidence            579999999999644 6999999999999999999999999999999999999999999997664        4799999


Q ss_pred             eccCCCCCCCCcHHHHHHHh-C---------CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376           99 QHHVDGLDLSSNPLLYMMRC-F---------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI  168 (239)
Q Consensus        99 q~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~l  168 (239)
                      |.......+..++.+.+... +         ...+.+++.++|+++|+. ++.++++++|||||+|||.|||||+++|++
T Consensus        82 Q~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~-~~~~r~i~~LSGGQ~QRV~lARAL~~~p~l  160 (254)
T COG1121          82 QKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME-DLRDRQIGELSGGQKQRVLLARALAQNPDL  160 (254)
T ss_pred             cccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch-hhhCCcccccCcHHHHHHHHHHHhccCCCE
Confidence            97644455556666554321 1         112357899999999998 578999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          169 ILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       169 lllDEPt~~LD~~~~~~l~~~l~---~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |+|||||+|+|+.++..+.+.|+   +.++||++||||++.+.++||+|+.|+. ++. +.|+++++..
T Consensus       161 llLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~-~~~-~~G~~~~~~~  227 (254)
T COG1121         161 LLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNR-HLI-ASGPPEEVLT  227 (254)
T ss_pred             EEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcC-eeE-eccChhhccC
Confidence            99999999999999888776665   4477999999999999999999999965 454 5788877643

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=9.4e-55  Score=357.89  Aligned_cols=204  Identities=25%  Similarity=0.411  Sum_probs=175.6

Q ss_pred             CeEEEEeeEEEcCCCC---ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------
Q 026376           27 PIISFSDASFGYPGGP---ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------   91 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~---~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------   91 (239)
                      ++++++|+++.|+++.   .++++|||+|.+||++||+|+||||||||.|+|+|+.+|++|+|.+++.            
T Consensus         2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~   81 (252)
T COG1124           2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY   81 (252)
T ss_pred             ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence            5799999999996543   4999999999999999999999999999999999999999999999883            


Q ss_pred             eEEEEEeeccCCCCCCCCcHHHHHHHhCC----CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 026376           92 VRIAVFSQHHVDGLDLSSNPLLYMMRCFP----GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH  167 (239)
Q Consensus        92 ~~~~~~~q~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~  167 (239)
                      ..+.++||++...+++..++...+.....    ...++++.++|+.+|+.....++.+.+|||||+||+||||||+.+|+
T Consensus        82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~Pk  161 (252)
T COG1124          82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPK  161 (252)
T ss_pred             cceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCC
Confidence            35899999998777776665444332211    12355689999999999988999999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhH
Q 026376          168 IILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD  231 (239)
Q Consensus       168 llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~  231 (239)
                      +||||||||+||...+..+++.|.+    ++-|+||||||+..+..+|||+++|++|++++ .++..+
T Consensus       162 lLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE-~~~~~~  228 (252)
T COG1124         162 LLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVE-IGPTEE  228 (252)
T ss_pred             EEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEE-eechhh
Confidence            9999999999999998888887754    35599999999999999999999999999974 444433

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=9.8e-55  Score=355.83  Aligned_cols=205  Identities=27%  Similarity=0.417  Sum_probs=176.6

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------------e
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------V   92 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~   92 (239)
                      ++|+++||++.|++++.+|++|||+|++||+++|+||||||||||||+|+|+.+|++|+|.+++.              .
T Consensus         2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~   81 (258)
T COG3638           2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR   81 (258)
T ss_pred             ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence            57999999999988888999999999999999999999999999999999999999999998762              3


Q ss_pred             EEEEEeeccCCCCCCCCcHHHHHH--------------HhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHH
Q 026376           93 RIAVFSQHHVDGLDLSSNPLLYMM--------------RCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF  158 (239)
Q Consensus        93 ~~~~~~q~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~l  158 (239)
                      .+||+||++.  +....+++.+..              ..++..+...+.++|+++|+.+ .+.++.++|||||+|||+|
T Consensus        82 ~iGmIfQ~~n--Lv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~-~A~qra~~LSGGQQQRVaI  158 (258)
T COG3638          82 DIGMIFQQFN--LVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILD-KAYQRASTLSGGQQQRVAI  158 (258)
T ss_pred             hceeEeccCC--cccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHH-HHHHHhccCCcchhHHHHH
Confidence            6999999864  222333333332              1122334566788999999975 5678899999999999999


Q ss_pred             HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          159 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       159 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      ||||+++|+++|.|||+|+|||.+.+.+++.|++.    +.|||+..|+++.+.++|||++-|++|+++ |+|+++++.+
T Consensus       159 ARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~iv-fDg~~~el~~  237 (258)
T COG3638         159 ARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV-FDGPASELTD  237 (258)
T ss_pred             HHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEE-EeCChhhhhH
Confidence            99999999999999999999999999998888653    579999999999999999999999999997 9999988654


Q ss_pred             H
Q 026376          235 M  235 (239)
Q Consensus       235 ~  235 (239)
                      .
T Consensus       238 ~  238 (258)
T COG3638         238 E  238 (258)
T ss_pred             H
Confidence            4

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=1.3e-54  Score=358.33  Aligned_cols=201  Identities=24%  Similarity=0.325  Sum_probs=171.7

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV   96 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~   96 (239)
                      |++++||||.|+ ++.+++|+||+|++||+++++|||||||||+||+|+++++|++|+|++++.           .++||
T Consensus         1 MI~~~nvsk~y~-~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY   79 (309)
T COG1125           1 MIEFENVSKRYG-NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY   79 (309)
T ss_pred             CceeeeeehhcC-CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence            689999999995 667999999999999999999999999999999999999999999998874           46999


Q ss_pred             EeeccCCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCc-ccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 026376           97 FSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTG-NLALQPMYTLSGGQKSRVAFAKITFKKPHII  169 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkqrv~laral~~~p~ll  169 (239)
                      +-|....  .+..++.+++...  ..++    ..+++.++|+.+|++. ...++++++|||||+|||.+||||+.+|++|
T Consensus        80 viQqigL--FPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~il  157 (309)
T COG1125          80 VIQQIGL--FPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPIL  157 (309)
T ss_pred             hhhhccc--CCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeE
Confidence            9998643  3334555554321  1122    2467889999999975 4788999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376          170 LLDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       170 llDEPt~~LD~~~~~~l~~~l~----~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                      |+||||++|||.++..+.+.+.    +.++|||+||||++++..++|||.+|++|+++.+ ++|+++
T Consensus       158 LMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~-~~P~~i  223 (309)
T COG1125         158 LMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQY-DTPDEI  223 (309)
T ss_pred             eecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEe-CCHHHH
Confidence            9999999999999988876654    3578999999999999999999999999999865 665554

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.9e-54  Score=356.66  Aligned_cols=190  Identities=27%  Similarity=0.389  Sum_probs=162.7

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------eEEEEEeec
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------VRIAVFSQH  100 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------~~~~~~~q~  100 (239)
                      .+++++++++.|+ ...+|+|+||+|.+||+++|+||||||||||||+|+|+.+|++|+|.+++.      ..++|+||+
T Consensus         2 ~~l~i~~v~~~f~-~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~   80 (248)
T COG1116           2 ALLEIEGVSKSFG-GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQE   80 (248)
T ss_pred             ceEEEEeeEEEeC-ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEecc
Confidence            3689999999995 478999999999999999999999999999999999999999999998875      369999999


Q ss_pred             cCCCCCCCCcHHHHHHHhC------CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 026376          101 HVDGLDLSSNPLLYMMRCF------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP  174 (239)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEP  174 (239)
                      +.  +.++.+...++....      .....+++.++|+.+|+.+ ..+++|++|||||||||+|||||+.+|++||||||
T Consensus        81 ~~--LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~-~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEP  157 (248)
T COG1116          81 DA--LLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAG-FEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEP  157 (248)
T ss_pred             Cc--ccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcc-hhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            74  334455555543211      1123457889999999986 56889999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHH----hhcCCEEEEEecCHHHHhhhcCeEEEEeCC
Q 026376          175 SNHLDLDAVEALIQGL----VLFQGGILMVSHDEHLISGSVEELWVVSEG  220 (239)
Q Consensus       175 t~~LD~~~~~~l~~~l----~~~~~tii~vsHd~~~~~~~~d~i~~l~~G  220 (239)
                      |++||..++..+.+.+    .+.+.||++||||.+++-.++|||++|.++
T Consensus       158 FgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~  207 (248)
T COG1116         158 FGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR  207 (248)
T ss_pred             cchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence            9999999987766554    445679999999999999999999999984

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.7e-53  Score=349.44  Aligned_cols=205  Identities=25%  Similarity=0.381  Sum_probs=171.0

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------------
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------   91 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------   91 (239)
                      .+.|++++|+++| |++.+++||||+|++||+++|+||||||||||||+|.|+++|++|+|++.+.              
T Consensus         6 ~~~I~vr~v~~~f-G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir   84 (263)
T COG1127           6 EPLIEVRGVTKSF-GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR   84 (263)
T ss_pred             cceEEEeeeeeec-CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence            5689999999999 5678999999999999999999999999999999999999999999998763              


Q ss_pred             eEEEEEeeccCCCCCCCCcHHHHHH---HhCCCCcHHH----HHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 026376           92 VRIAVFSQHHVDGLDLSSNPLLYMM---RCFPGVPEQK----LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK  164 (239)
Q Consensus        92 ~~~~~~~q~~~~~~~~~~~~~~~~~---~~~~~~~~~~----~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~  164 (239)
                      .++|++||.-..+-  ..+++++..   +.+...++..    +..-|+.+|+.....++.+++|||||++|++||||++.
T Consensus        85 ~r~GvlFQ~gALFs--sltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAial  162 (263)
T COG1127          85 KRMGVLFQQGALFS--SLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIAL  162 (263)
T ss_pred             hheeEEeecccccc--ccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhc
Confidence            36999999853222  223333332   2233444443    34468889998776788999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHH---hh-cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGL---VL-FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l---~~-~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      +|+++++||||+||||.+...+-+.+   ++ .+.|+++||||++.+..+|||++++.+|+|. +.|+++++.+
T Consensus       163 dPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~-~~Gt~~el~~  235 (263)
T COG1127         163 DPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVI-AEGTPEELLA  235 (263)
T ss_pred             CCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEE-EeCCHHHHHh
Confidence            99999999999999998866554444   33 4679999999999999999999999999997 8999998753

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=8.1e-54  Score=362.46  Aligned_cols=201  Identities=25%  Similarity=0.369  Sum_probs=170.9

Q ss_pred             eEEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------
Q 026376           28 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------   91 (239)
Q Consensus        28 ~l~~~~l~~~y~~~----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------   91 (239)
                      ||++++|+|.|..+    ..+++||||+|++||++||+|.||||||||+|||+++.+|++|+|.+++.            
T Consensus         1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~   80 (339)
T COG1135           1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ   80 (339)
T ss_pred             CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence            68999999999642    46999999999999999999999999999999999999999999998873            


Q ss_pred             --eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 026376           92 --VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF  163 (239)
Q Consensus        92 --~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~  163 (239)
                        .+||++||++..  ....+++.+++.  ...+.    ..+++.++|+.+|++ +..++++.+|||||||||+|||||+
T Consensus        81 ~R~~IGMIFQhFnL--LssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~-dk~~~yP~qLSGGQKQRVaIARALa  157 (339)
T COG1135          81 LRQKIGMIFQHFNL--LSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLS-DKADRYPAQLSGGQKQRVAIARALA  157 (339)
T ss_pred             HHhhccEEeccccc--cccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCCh-hhhccCchhcCcchhhHHHHHHHHh
Confidence              369999998642  223445444431  11122    246788999999998 4678899999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376          164 KKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                      .+|+|||.|||||+|||++...+++.|++    .+.||++|||.++.+.++|||+.+|++|+++ ..|+..++
T Consensus       158 ~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lv-E~G~v~~v  229 (339)
T COG1135         158 NNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLV-EEGTVSEV  229 (339)
T ss_pred             cCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEE-EeccHHHh
Confidence            99999999999999999999988887764    3669999999999999999999999999997 56776654

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.8e-52  Score=350.71  Aligned_cols=206  Identities=32%  Similarity=0.484  Sum_probs=176.7

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEE
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI   94 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~   94 (239)
                      +++.++++++.|+++..+|+++||+|++|++++|+|+||||||||+++++|+++|++|+|.+++.            .++
T Consensus         2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v   81 (235)
T COG1122           2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV   81 (235)
T ss_pred             ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence            47899999999976567999999999999999999999999999999999999999999987663            359


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHhC--CCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRCF--PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI  168 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~l  168 (239)
                      ||++|++..++ +..++.+.++...  .+.    ..+++.++++.+++.+ ..++++.+|||||||||+||.+|+.+|++
T Consensus        82 G~VfQnpd~q~-~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~-~~~r~p~~LSGGqkqRvaIA~vLa~~P~i  159 (235)
T COG1122          82 GLVFQNPDDQL-FGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEE-LLDRPPFNLSGGQKQRVAIAGVLAMGPEI  159 (235)
T ss_pred             EEEEECccccc-ccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchh-hccCCccccCCcceeeHHhhHHHHcCCCE
Confidence            99999986544 3445555443211  122    2356788999999985 57899999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376          169 ILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  235 (239)
Q Consensus       169 lllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  235 (239)
                      ||||||||+||+.++..+++.+.++    +.|||++|||++++..+||++++|++|+++ ++|++.++.+.
T Consensus       160 liLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~-~~g~p~~i~~~  229 (235)
T COG1122         160 LLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKIL-ADGDPAEIFND  229 (235)
T ss_pred             EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEe-ecCCHHHHhhh
Confidence            9999999999999999988877654    459999999999999999999999999997 78998887654

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=2.3e-52  Score=345.12  Aligned_cols=193  Identities=30%  Similarity=0.424  Sum_probs=161.5

Q ss_pred             eEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------
Q 026376           28 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------   91 (239)
Q Consensus        28 ~l~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------   91 (239)
                      +++++||++.|..+   ..+|+++||+|++||+++|+|||||||||||++|.|+.+|++|.|.+++.             
T Consensus         1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~   80 (226)
T COG1136           1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL   80 (226)
T ss_pred             CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence            46899999999533   35899999999999999999999999999999999999999999988762             


Q ss_pred             --eEEEEEeeccCCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 026376           92 --VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF  163 (239)
Q Consensus        92 --~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~  163 (239)
                        ..+||+||++..  ....+..+++..  .+..    ....++.++++.+|+.+...++++.+|||||||||||||||+
T Consensus        81 R~~~iGfvFQ~~nL--l~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~  158 (226)
T COG1136          81 RRKKIGFVFQNFNL--LPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALI  158 (226)
T ss_pred             HHHhEEEECccCCC--CCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHh
Confidence              259999998743  233445554431  1112    224567888999999866655889999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376          164 KKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~  223 (239)
                      .+|+++|+||||.+||.++.+.+++.+.+.    +.||||||||...+. +|||++.|++|++.
T Consensus       159 ~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~~  221 (226)
T COG1136         159 NNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKIE  221 (226)
T ss_pred             cCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCeee
Confidence            999999999999999999999888877653    569999999999887 79999999999953

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=1.2e-51  Score=357.87  Aligned_cols=206  Identities=26%  Similarity=0.412  Sum_probs=173.9

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVF   97 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~~~   97 (239)
                      .++++|+++.|++++.+|+||||+|++|+++||+||||||||||+|+|+|+++|++|+|.+.+.          .++||+
T Consensus         4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~   83 (293)
T COG1131           4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV   83 (293)
T ss_pred             eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEE
Confidence            5789999999952568999999999999999999999999999999999999999999998762          359999


Q ss_pred             eeccCCCCCCCCcHHHHH-HHhCCC---CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 026376           98 SQHHVDGLDLSSNPLLYM-MRCFPG---VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE  173 (239)
Q Consensus        98 ~q~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDE  173 (239)
                      +|++.....++......+ ...+..   ...+++.++++.+++.+ ..++++++||+|||||++||+||+.+|++|||||
T Consensus        84 ~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDE  162 (293)
T COG1131          84 PQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLED-KANKKVRTLSGGMKQRLSIALALLHDPELLILDE  162 (293)
T ss_pred             ccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch-hhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECC
Confidence            999754333332222222 222221   23568899999999986 4478899999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhc---C-CEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376          174 PSNHLDLDAVEALIQGLVLF---Q-GGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  235 (239)
Q Consensus       174 Pt~~LD~~~~~~l~~~l~~~---~-~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  235 (239)
                      ||+|||+.++..+.+.|++.   + .||+++||.++.+..+||+|++|++|+++ +.|+++++...
T Consensus       163 Pt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~-~~g~~~~l~~~  227 (293)
T COG1131         163 PTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKII-AEGTPEELKEK  227 (293)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEE-EeCCHHHHHHh
Confidence            99999999999888877653   4 59999999999999999999999999997 67888887654

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=3.4e-52  Score=364.34  Aligned_cols=205  Identities=24%  Similarity=0.344  Sum_probs=174.2

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEE
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAV   96 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~   96 (239)
                      .+.++++||++.|+ +..+++|+||+|++||+++|+||||||||||||+|+|+..|++|+|.++++         ..+++
T Consensus         3 ~~~l~i~~v~k~yg-~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~   81 (352)
T COG3842           3 KPALEIRNVSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGM   81 (352)
T ss_pred             CceEEEEeeeeecC-CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccce
Confidence            35799999999995 678999999999999999999999999999999999999999999999874         46999


Q ss_pred             EeeccCCCCCCCCcHHHHHHHhC---CCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 026376           97 FSQHHVDGLDLSSNPLLYMMRCF---PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII  169 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ll  169 (239)
                      |||+...+  +..++.+++....   ...    ..+++.++|+.+++.+ ..++++++|||||||||||||||+.+|++|
T Consensus        82 VFQ~YALF--PHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~-~~~R~p~qLSGGQqQRVALARAL~~~P~vL  158 (352)
T COG3842          82 VFQSYALF--PHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEG-FADRKPHQLSGGQQQRVALARALVPEPKVL  158 (352)
T ss_pred             eecCcccC--CCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchh-hhhhChhhhChHHHHHHHHHHHhhcCcchh
Confidence            99997533  3345555443211   111    2357899999999985 678999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376          170 LLDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  235 (239)
Q Consensus       170 llDEPt~~LD~~~~~~l~~~l~----~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  235 (239)
                      |||||.++||..-+..+...++    +.+.|.|+||||.+++..++|||.+|++|++. -.|+++++..+
T Consensus       159 LLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~-Q~gtP~eiY~~  227 (352)
T COG3842         159 LLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIE-QVGTPEEIYER  227 (352)
T ss_pred             hhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCcee-ecCCHHHHhhC
Confidence            9999999999998877765554    45779999999999999999999999999997 46888887543

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=100.00  E-value=5e-51  Score=356.36  Aligned_cols=205  Identities=23%  Similarity=0.348  Sum_probs=172.5

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEE
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIA   95 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~   95 (239)
                      .++++++||+++|+ +..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|++++.          ..+|
T Consensus         5 ~~~i~i~~l~k~~~-~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig   83 (306)
T PRK13537          5 VAPIDFRNVEKRYG-DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVG   83 (306)
T ss_pred             CceEEEEeEEEEEC-CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEE
Confidence            35799999999995 467999999999999999999999999999999999999999999998763          3599


Q ss_pred             EEeeccCCCCCCCCcHHHHHH--HhCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 026376           96 VFSQHHVDGLDLSSNPLLYMM--RCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII  169 (239)
Q Consensus        96 ~~~q~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ll  169 (239)
                      |++|++....  ..+..+++.  .......    ..++.++++.+++.+ ..++++++||||||||++||+||+.+|++|
T Consensus        84 ~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~aL~~~P~ll  160 (306)
T PRK13537         84 VVPQFDNLDP--DFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLEN-KADAKVGELSGGMKRRLTLARALVNDPDVL  160 (306)
T ss_pred             EEeccCcCCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-HhcCchhhCCHHHHHHHHHHHHHhCCCCEE
Confidence            9999864322  233333332  1111221    345678899999974 567889999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376          170 LLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  235 (239)
Q Consensus       170 llDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  235 (239)
                      ||||||+|||+.++..+.+.++++   +.|||++||+++++..+||++++|++|+++ +.|+++++...
T Consensus       161 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~-~~g~~~~l~~~  228 (306)
T PRK13537        161 VLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKI-AEGAPHALIES  228 (306)
T ss_pred             EEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHhc
Confidence            999999999999999988877654   569999999999999999999999999997 68999888644

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.2e-52  Score=350.03  Aligned_cols=204  Identities=24%  Similarity=0.322  Sum_probs=173.4

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEE
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI   94 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~   94 (239)
                      ++|+++|+++.| ++..+++|||++|+.||+++++||||||||||||+|+|++.|++|+|.++++            .++
T Consensus         1 m~i~i~~~~~~~-~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~V   79 (345)
T COG1118           1 MSIRINNVKKRF-GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKV   79 (345)
T ss_pred             Cceeehhhhhhc-ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcce
Confidence            368999999999 4567899999999999999999999999999999999999999999998875            369


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHhC------C--CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRCF------P--GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP  166 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p  166 (239)
                      ||+||++..+  ..+++.++++...      +  ...+.++.++|+.+.+++ +.++++.+|||||||||||||||+.+|
T Consensus        80 GfvFQ~YALF--~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~-la~ryP~QLSGGQrQRVALARALA~eP  156 (345)
T COG1118          80 GFVFQHYALF--PHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEG-LADRYPAQLSGGQRQRVALARALAVEP  156 (345)
T ss_pred             eEEEechhhc--ccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccc-hhhcCchhcChHHHHHHHHHHHhhcCC
Confidence            9999997532  3345555543211      1  123567889999999974 788999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376          167 HIILLDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  235 (239)
Q Consensus       167 ~llllDEPt~~LD~~~~~~l~~~l~----~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  235 (239)
                      ++||||||+++||..-+..+...|.    +.+.|+++||||.+++.++||||++|++|+|. ..|+++++.+.
T Consensus       157 ~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ie-qvg~p~ev~~~  228 (345)
T COG1118         157 KVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIE-QVGPPDEVYDH  228 (345)
T ss_pred             CeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeee-eeCCHHHHhcC
Confidence            9999999999999998777766654    44779999999999999999999999999997 46888887543

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2e-51  Score=357.75  Aligned_cols=202  Identities=23%  Similarity=0.353  Sum_probs=172.1

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEe
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS   98 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~   98 (239)
                      +|+++||++.|++.. +++++||+|+.||+++|+||||||||||||+|+|+++|++|+|.++++         +.++++|
T Consensus         3 ~i~l~~v~K~yg~~~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVF   81 (338)
T COG3839           3 ELELKNVRKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVF   81 (338)
T ss_pred             EEEEeeeEEEcCCce-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEe
Confidence            689999999995322 899999999999999999999999999999999999999999999874         4699999


Q ss_pred             eccCCCCCCCCcHHHHHHHhC--C----CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376           99 QHHVDGLDLSSNPLLYMMRCF--P----GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD  172 (239)
Q Consensus        99 q~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD  172 (239)
                      |++..  .+..++.+++....  .    ...++++.++++.+++.+ +.++++.+|||||||||||||||+++|+++|||
T Consensus        82 Q~yAL--yPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~-lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~D  158 (338)
T COG3839          82 QNYAL--YPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEH-LLNRKPLQLSGGQRQRVALARALVRKPKVFLLD  158 (338)
T ss_pred             CCccc--cCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChh-HHhcCcccCChhhHHHHHHHHHHhcCCCEEEec
Confidence            99753  34456666654211  1    123567889999999975 668889999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          173 EPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       173 EPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      ||+|+||...+..+...+++    .+.|+|+||||..++..++|||.+|++|++.. -|++.++.+
T Consensus       159 EPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q-~g~p~ely~  223 (338)
T COG3839         159 EPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQ-VGTPLELYE  223 (338)
T ss_pred             CchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeee-cCChHHHhh
Confidence            99999999988777665543    46799999999999999999999999999975 577777643

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=100.00  E-value=1.7e-50  Score=357.19  Aligned_cols=205  Identities=25%  Similarity=0.343  Sum_probs=172.4

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEE
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIA   95 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~   95 (239)
                      .++|+++||+++|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.          ..++
T Consensus        39 ~~~i~i~nl~k~y~-~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig  117 (340)
T PRK13536         39 TVAIDLAGVSKSYG-DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIG  117 (340)
T ss_pred             ceeEEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEE
Confidence            45799999999995 557999999999999999999999999999999999999999999998763          3599


Q ss_pred             EEeeccCCCCCCCCcHHHHHH---HhCCCC---cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 026376           96 VFSQHHVDGLDLSSNPLLYMM---RCFPGV---PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII  169 (239)
Q Consensus        96 ~~~q~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ll  169 (239)
                      |++|++....  ..+..+++.   ..+...   ..+++.++++.+++.+ ..++++.+||||||||++||+||+.+|++|
T Consensus       118 ~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-~~~~~~~~LS~G~kqrv~lA~aL~~~P~lL  194 (340)
T PRK13536        118 VVPQFDNLDL--EFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-KADARVSDLSGGMKRRLTLARALINDPQLL  194 (340)
T ss_pred             EEeCCccCCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-hhCCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            9999864322  223333332   122111   1345678899999974 567889999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376          170 LLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  235 (239)
Q Consensus       170 llDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  235 (239)
                      ||||||+|||+.++..+.+.++++   +.|||++||+++++.++||+|++|++|+++ +.|+++++...
T Consensus       195 iLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~-~~g~~~~l~~~  262 (340)
T PRK13536        195 ILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKI-AEGRPHALIDE  262 (340)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHhh
Confidence            999999999999999998887654   679999999999999999999999999997 68999887643

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.4e-50  Score=357.66  Aligned_cols=202  Identities=22%  Similarity=0.297  Sum_probs=169.4

Q ss_pred             eEEEEeeEEEcCC---CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------
Q 026376           28 IISFSDASFGYPG---GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------   91 (239)
Q Consensus        28 ~l~~~~l~~~y~~---~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------   91 (239)
                      ||+++|++++|++   ...+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.             
T Consensus         1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~   80 (343)
T TIGR02314         1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA   80 (343)
T ss_pred             CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence            5899999999953   236999999999999999999999999999999999999999999988763             


Q ss_pred             -eEEEEEeeccCCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 026376           92 -VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK  164 (239)
Q Consensus        92 -~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~  164 (239)
                       ..++|+||++..  ....+..+++...  ....    ..+++.++++.+|+.+ ..++++.+|||||||||+|||||+.
T Consensus        81 r~~Ig~v~Q~~~l--~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~-~~~~~~~~LSgGqkQRV~IARAL~~  157 (343)
T TIGR02314        81 RRQIGMIFQHFNL--LSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGD-KHDSYPSNLSGGQKQRVAIARALAS  157 (343)
T ss_pred             hcCEEEEECCccc--cccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHHHHh
Confidence             259999998642  2223444443311  1111    2346788999999974 5678999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      +|++|||||||++||+.++..+++.|++.    +.|||+||||++.+.++||++++|++|+++ ..|+++++.
T Consensus       158 ~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv-~~g~~~~v~  229 (343)
T TIGR02314       158 NPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELI-EQGTVSEIF  229 (343)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence            99999999999999999999888877653    679999999999999999999999999997 578877764

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=100.00  E-value=4.3e-51  Score=324.24  Aligned_cols=195  Identities=27%  Similarity=0.418  Sum_probs=165.8

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------------eE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------VR   93 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~~   93 (239)
                      ||+++||+++|+++..+|+||||+|++||++-|+||||||||||||+|++..+|++|+|++++.              .+
T Consensus         1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~   80 (223)
T COG2884           1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ   80 (223)
T ss_pred             CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence            5899999999988877999999999999999999999999999999999999999999998763              46


Q ss_pred             EEEEeeccCCCCCCCCcHHHHHHHhC------CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 026376           94 IAVFSQHHVDGLDLSSNPLLYMMRCF------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH  167 (239)
Q Consensus        94 ~~~~~q~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~  167 (239)
                      ||++||++..-  ...+++++.+...      +..-++++.++|+.+|+.+ ..+..+.+|||||||||+||||++.+|+
T Consensus        81 IGvVFQD~rLL--~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~-k~~~lP~~LSGGEQQRvaIARAiV~~P~  157 (223)
T COG2884          81 IGVVFQDFRLL--PDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKH-KARALPSQLSGGEQQRVAIARAIVNQPA  157 (223)
T ss_pred             eeeEeeecccc--ccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccch-hhhcCccccCchHHHHHHHHHHHccCCC
Confidence            99999997422  2234444443211      1123567889999999975 4567789999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEee
Q 026376          168 IILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVSEGKATPF  225 (239)
Q Consensus       168 llllDEPt~~LD~~~~~~l~~~l~---~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~  225 (239)
                      +||.||||.+|||.....+++.+.   ..|.||+|+|||.+.+.++..|++.+++|+++..
T Consensus       158 vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d  218 (223)
T COG2884         158 VLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRD  218 (223)
T ss_pred             eEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEec
Confidence            999999999999998877766654   4577999999999999999999999999999743

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=3.5e-50  Score=383.93  Aligned_cols=213  Identities=96%  Similarity=1.485  Sum_probs=184.7

Q ss_pred             CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCC
Q 026376           25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG  104 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~  104 (239)
                      +.++|+++|+++.|+++..+|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.+++...++|++|++...
T Consensus       505 ~~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~  584 (718)
T PLN03073        505 GPPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDG  584 (718)
T ss_pred             CCceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEecccccc
Confidence            34689999999999644568999999999999999999999999999999999999999999988878899999986444


Q ss_pred             CCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHH
Q 026376          105 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE  184 (239)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~  184 (239)
                      +++..+....+.........+++.++|+.+++.....++++.+|||||||||+|||||+.+|++|||||||+|||+.++.
T Consensus       585 l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~  664 (718)
T PLN03073        585 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVE  664 (718)
T ss_pred             CCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence            44433433333222233456778899999999754567899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHHhh
Q 026376          185 ALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQ  237 (239)
Q Consensus       185 ~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~  237 (239)
                      .+++.+.++++|||+||||++++..+||++++|++|+++.+.|++++|.+.+.
T Consensus       665 ~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~~~~~  717 (718)
T PLN03073        665 ALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYKKTLQ  717 (718)
T ss_pred             HHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHHHHhh
Confidence            99999988777999999999999999999999999999778999999988754

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=100.00  E-value=2.6e-50  Score=351.63  Aligned_cols=204  Identities=25%  Similarity=0.350  Sum_probs=170.3

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEE
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIA   95 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~   95 (239)
                      +.+|+++|++++|+ +..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.          ..++
T Consensus         2 ~~~i~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~   80 (303)
T TIGR01288         2 NVAIDLVGVSKSYG-DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIG   80 (303)
T ss_pred             CcEEEEEeEEEEeC-CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEE
Confidence            35799999999995 457999999999999999999999999999999999999999999998763          3599


Q ss_pred             EEeeccCCCCCCCCcHHHHHH--HhCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 026376           96 VFSQHHVDGLDLSSNPLLYMM--RCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII  169 (239)
Q Consensus        96 ~~~q~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ll  169 (239)
                      |++|++...  ...+...++.  .......    .+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|
T Consensus        81 ~v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~~p~ll  157 (303)
T TIGR01288        81 VVPQFDNLD--PEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-KADVRVALLSGGMKRRLTLARALINDPQLL  157 (303)
T ss_pred             EEeccccCC--cCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-HhcCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            999986422  2234443332  1111122    235667899999974 567889999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          170 LLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       170 llDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      ||||||+|||+.++..+.+.+++.   +.|||++|||++++..+||++++|++|+++ ..|+++++.+
T Consensus       158 lLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~  224 (303)
T TIGR01288       158 ILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKI-AEGRPHALID  224 (303)
T ss_pred             EEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence            999999999999999988877654   679999999999999999999999999997 6789888754

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=2.2e-50  Score=339.92  Aligned_cols=200  Identities=26%  Similarity=0.349  Sum_probs=166.2

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------------eEE
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------VRI   94 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~~~   94 (239)
                      |+++|+++.|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.              ..+
T Consensus         1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i   79 (235)
T cd03261           1 IELRGLTKSFG-GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM   79 (235)
T ss_pred             CeEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence            47899999995 456999999999999999999999999999999999999999999987652              248


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHH---hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMR---CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH  167 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~  167 (239)
                      +|++|++...  ...+..+++..   ......    .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|+
T Consensus        80 ~~v~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~ia~al~~~p~  156 (235)
T cd03261          80 GMLFQSGALF--DSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRG-AEDLYPAELSGGMKKRVALARALALDPE  156 (235)
T ss_pred             EEEccCcccC--CCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            9999986322  22344444321   111111    345678899999974 4578899999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          168 IILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       168 llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      +|||||||++||+.++..+.+.+++.    +.|||+||||++++..+||++++|++|+++ +.|+++++.
T Consensus       157 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~  225 (235)
T cd03261         157 LLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIV-AEGTPEELR  225 (235)
T ss_pred             EEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEE-EecCHHHHc
Confidence            99999999999999999888877653    579999999999999999999999999997 678887764

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=100.00  E-value=2.2e-50  Score=335.74  Aligned_cols=192  Identities=30%  Similarity=0.443  Sum_probs=160.3

Q ss_pred             eEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------------e
Q 026376           28 IISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------V   92 (239)
Q Consensus        28 ~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~   92 (239)
                      ||+++|++++|+++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.              .
T Consensus         1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   80 (216)
T TIGR00960         1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR   80 (216)
T ss_pred             CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence            48899999999643 46999999999999999999999999999999999999999999988763              2


Q ss_pred             EEEEEeeccCCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 026376           93 RIAVFSQHHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP  166 (239)
Q Consensus        93 ~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p  166 (239)
                      .++|++|++...  ...+..+++..  ....    ...+++.++++.+++.+ ..++++.+||||||||++|||||+.+|
T Consensus        81 ~i~~~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~laral~~~p  157 (216)
T TIGR00960        81 HIGMVFQDHRLL--SDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEG-KAHALPMQLSGGEQQRVAIARAIVHKP  157 (216)
T ss_pred             hceEEecCcccc--ccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence            489999986422  22234433321  1111    12356788999999974 567888999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeE
Q 026376          167 HIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKA  222 (239)
Q Consensus       167 ~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i  222 (239)
                      ++|||||||++||+.++..+.+.+.+.   +.|||+||||++++..+||++++|++|++
T Consensus       158 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i  216 (216)
T TIGR00960       158 PLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL  216 (216)
T ss_pred             CEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            999999999999999999988877654   57999999999999999999999999974

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.1e-50  Score=357.48  Aligned_cols=203  Identities=24%  Similarity=0.315  Sum_probs=171.2

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEe
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS   98 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~   98 (239)
                      +|+++|++++|+++..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++.         ..++|++
T Consensus         3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~   82 (356)
T PRK11650          3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF   82 (356)
T ss_pred             EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence            6899999999943457999999999999999999999999999999999999999999998874         3599999


Q ss_pred             eccCCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376           99 QHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD  172 (239)
Q Consensus        99 q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD  172 (239)
                      |++..+  ...+..+++...  ....    ...++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||||
T Consensus        83 Q~~~lf--p~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGq~QRvalARAL~~~P~llLLD  159 (356)
T PRK11650         83 QNYALY--PHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEP-LLDRKPRELSGGQRQRVAMGRAIVREPAVFLFD  159 (356)
T ss_pred             CCcccc--CCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChh-HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            987432  233455444321  1111    1346788999999974 678899999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          173 EPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       173 EPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |||++||+.++..+.+.+++    .+.|+|+||||.+++..+||++++|++|++. ..|+++++.+
T Consensus       160 EP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~-~~g~~~~~~~  224 (356)
T PRK11650        160 EPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAE-QIGTPVEVYE  224 (356)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE-EECCHHHHHh
Confidence            99999999999988776654    3679999999999999999999999999997 5688887643

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.6e-50  Score=381.38  Aligned_cols=210  Identities=39%  Similarity=0.728  Sum_probs=181.3

Q ss_pred             CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCC
Q 026376           25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG  104 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~  104 (239)
                      ++++|+++|+++.|+ ++.+|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.+.....++|++|+....
T Consensus       309 ~~~~l~~~~l~~~y~-~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~  387 (638)
T PRK10636        309 PNPLLKMEKVSAGYG-DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEF  387 (638)
T ss_pred             CCceEEEEeeEEEeC-CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhh
Confidence            566899999999995 4579999999999999999999999999999999999999999999987667899999974322


Q ss_pred             CCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHH
Q 026376          105 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE  184 (239)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~  184 (239)
                      +....+....+..........++.++|+.+++.....++++++|||||||||+|||+|+.+|++|||||||||||+.++.
T Consensus       388 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~  467 (638)
T PRK10636        388 LRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQ  467 (638)
T ss_pred             CCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence            33333444433222222335678899999999654567899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376          185 ALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  235 (239)
Q Consensus       185 ~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  235 (239)
                      .+.+.|.++++|||+||||++++..+||++++|++|+++.+.|++++|.++
T Consensus       468 ~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  518 (638)
T PRK10636        468 ALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQW  518 (638)
T ss_pred             HHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHHH
Confidence            999999998889999999999999999999999999997789999999653

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=3.3e-50  Score=332.24  Aligned_cols=192  Identities=22%  Similarity=0.379  Sum_probs=160.5

Q ss_pred             EEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce--------EEEEEeecc
Q 026376           30 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--------RIAVFSQHH  101 (239)
Q Consensus        30 ~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~--------~~~~~~q~~  101 (239)
                      +++|++++|++++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++..        .++|++|++
T Consensus         1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~   80 (205)
T cd03226           1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDV   80 (205)
T ss_pred             CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence            368999999542579999999999999999999999999999999999999999999987742        589999985


Q ss_pred             CCCCCCCCcHHHHHHHh--CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 026376          102 VDGLDLSSNPLLYMMRC--FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD  179 (239)
Q Consensus       102 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD  179 (239)
                      ...+ ...+..+++...  .......++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||++||
T Consensus        81 ~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD  158 (205)
T cd03226          81 DYQL-FTDSVREELLLGLKELDAGNEQAETVLKDLDLYA-LKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD  158 (205)
T ss_pred             hhhh-hhccHHHHHhhhhhhcCccHHHHHHHHHHcCCch-hcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence            3111 123444444221  11223457889999999975 5678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376          180 LDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       180 ~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~  223 (239)
                      +.++..+.+.+++.   +.|||++|||++++..+||++++|++|+++
T Consensus       159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv  205 (205)
T cd03226         159 YKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV  205 (205)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence            99999988877654   569999999999999999999999999873

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7e-50  Score=354.49  Aligned_cols=204  Identities=24%  Similarity=0.376  Sum_probs=172.4

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEE
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAV   96 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~   96 (239)
                      .++|+++|+++.|+ +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++.         ..++|
T Consensus         4 ~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~   82 (351)
T PRK11432          4 KNFVVLKNITKRFG-SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICM   82 (351)
T ss_pred             CcEEEEEeEEEEEC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence            34799999999995 567899999999999999999999999999999999999999999998774         36999


Q ss_pred             EeeccCCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 026376           97 FSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL  170 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~lll  170 (239)
                      ++|++...  ...+..+++...  ....    ..+++.++++.+++.+ +.++++.+|||||||||+|||||+.+|++||
T Consensus        83 vfQ~~~lf--p~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~-~~~r~~~~LSgGq~QRVaLARaL~~~P~lLL  159 (351)
T PRK11432         83 VFQSYALF--PHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAG-FEDRYVDQISGGQQQRVALARALILKPKVLL  159 (351)
T ss_pred             EeCCcccC--CCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence            99987432  233444444321  1111    2357788999999974 5688999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          171 LDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       171 lDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |||||++||+..+..+.+.|++    .+.|+|+||||.+++..+||++++|++|++. ..|+++++.+
T Consensus       160 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~-~~g~~~~~~~  226 (351)
T PRK11432        160 FDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIM-QIGSPQELYR  226 (351)
T ss_pred             EcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence            9999999999999988777754    3679999999999999999999999999997 5788887643

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=100.00  E-value=4.1e-50  Score=335.10  Aligned_cols=199  Identities=21%  Similarity=0.309  Sum_probs=165.0

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEEEEe
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVFS   98 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~~~~   98 (239)
                      |+++|++++|+ ++.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.          ..++|++
T Consensus         1 i~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~   79 (220)
T cd03265           1 IEVENLVKKYG-DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF   79 (220)
T ss_pred             CEEEEEEEEEC-CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence            47899999995 457999999999999999999999999999999999999999999988763          2589999


Q ss_pred             eccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376           99 QHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD  172 (239)
Q Consensus        99 q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD  172 (239)
                      |++...  ...+...++..  .....    ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++||||
T Consensus        80 q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr~~la~al~~~p~llllD  156 (220)
T cd03265          80 QDLSVD--DELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLE-AADRLVKTYSGGMRRRLEIARSLVHRPEVLFLD  156 (220)
T ss_pred             CCcccc--ccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            986422  22233333321  11111    2346788999999974 567889999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376          173 EPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       173 EPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                      |||++||+.++..+.+.+.+.    +.|||++|||++++..+||++++|++|+++ ..++++++
T Consensus       157 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~  219 (220)
T cd03265         157 EPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRII-AEGTPEEL  219 (220)
T ss_pred             CCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE-EeCChHHc
Confidence            999999999999888877542    569999999999999999999999999997 56776653

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=100.00  E-value=8.1e-50  Score=337.34  Aligned_cols=201  Identities=26%  Similarity=0.322  Sum_probs=166.9

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEe
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS   98 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~   98 (239)
                      +|+++|++++|++ ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.         ..++|++
T Consensus         2 ~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~   80 (239)
T cd03296           2 SIEVRNVSKRFGD-FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVF   80 (239)
T ss_pred             EEEEEeEEEEECC-EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEe
Confidence            5899999999954 57999999999999999999999999999999999999999999988763         2489999


Q ss_pred             eccCCCCCCCCcHHHHHHH---hCC-----CC--cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376           99 QHHVDGLDLSSNPLLYMMR---CFP-----GV--PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI  168 (239)
Q Consensus        99 q~~~~~~~~~~~~~~~~~~---~~~-----~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~l  168 (239)
                      |++...  ...+..+++..   ...     ..  ..+++.++++.+++.. ..++++.+||||||||++|||||+.+|++
T Consensus        81 q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~l  157 (239)
T cd03296          81 QHYALF--RHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDW-LADRYPAQLSGGQRQRVALARALAVEPKV  157 (239)
T ss_pred             cCCccc--CCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChh-hhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            986422  22234333321   111     01  1245678899999964 56788899999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          169 ILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       169 lllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      |||||||++||+.++..+.+.+.+.    +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus       158 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  225 (239)
T cd03296         158 LLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIE-QVGTPDEVY  225 (239)
T ss_pred             EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-EecCHHHHh
Confidence            9999999999999999888877643    569999999999999999999999999997 678887764

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=8.2e-50  Score=354.46  Aligned_cols=203  Identities=23%  Similarity=0.336  Sum_probs=171.8

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEE
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVF   97 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~   97 (239)
                      ++|+++|++++|+ +..+|+|+||++++||+++|+|||||||||||++|+|+++|++|+|.+++.         ..++|+
T Consensus         3 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v   81 (353)
T TIGR03265         3 PYLSIDNIRKRFG-AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIV   81 (353)
T ss_pred             cEEEEEEEEEEeC-CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence            3699999999995 456899999999999999999999999999999999999999999998763         359999


Q ss_pred             eeccCCCCCCCCcHHHHHHHh--CCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 026376           98 SQHHVDGLDLSSNPLLYMMRC--FPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL  171 (239)
Q Consensus        98 ~q~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llll  171 (239)
                      +|++...  ...++.+++...  ...    ....++.++++.+++.+ +.++++.+|||||||||+|||||+.+|++|||
T Consensus        82 ~Q~~~lf--p~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~-~~~~~~~~LSgGq~QRvaLARaL~~~P~llLL  158 (353)
T TIGR03265        82 FQSYALF--PNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPG-SERKYPGQLSGGQQQRVALARALATSPGLLLL  158 (353)
T ss_pred             eCCcccC--CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCc-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            9986432  223444444311  111    12456888999999975 67889999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          172 DEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       172 DEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      ||||++||...+..+.+.|++    .+.|+|+||||.+++..+||++++|++|+++ ..|+++++.+
T Consensus       159 DEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~-~~g~~~~~~~  224 (353)
T TIGR03265       159 DEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIE-QVGTPQEIYR  224 (353)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence            999999999999988877754    3679999999999999999999999999997 5688887654

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=100.00  E-value=9.8e-50  Score=347.65  Aligned_cols=203  Identities=22%  Similarity=0.348  Sum_probs=172.0

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVF   97 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~~~   97 (239)
                      +++++|++++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.          ..++|+
T Consensus         2 ~l~~~~l~~~~~-~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~   80 (301)
T TIGR03522         2 SIRVSSLTKLYG-TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYL   80 (301)
T ss_pred             EEEEEEEEEEEC-CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEe
Confidence            589999999995 567999999999999999999999999999999999999999999998763          258999


Q ss_pred             eeccCCCCCCCCcHHHHHH--HhCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 026376           98 SQHHVDGLDLSSNPLLYMM--RCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL  171 (239)
Q Consensus        98 ~q~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llll  171 (239)
                      +|++....  ..+..+++.  .......    .+++.++++.+++.+ ..++++..||||||||++|||||+.+|++|||
T Consensus        81 ~q~~~l~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~la~al~~~p~lliL  157 (301)
T TIGR03522        81 PEHNPLYL--DMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRP-EQHKKIGQLSKGYRQRVGLAQALIHDPKVLIL  157 (301)
T ss_pred             cCCCCCCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            99864322  223433332  1111111    356788999999975 46788999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376          172 DEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  235 (239)
Q Consensus       172 DEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  235 (239)
                      ||||+|||+.++..+.+.++++  +.|||++||+++++.++||++++|++|++. +.|+++++...
T Consensus       158 DEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~~  222 (301)
T TIGR03522       158 DEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIV-ADKKLDELSAA  222 (301)
T ss_pred             cCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHHh
Confidence            9999999999999998888765  569999999999999999999999999997 78999988654

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=100.00  E-value=3.8e-50  Score=333.63  Aligned_cols=191  Identities=27%  Similarity=0.379  Sum_probs=159.8

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEee
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ   99 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~q   99 (239)
                      ++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.         ..++|++|
T Consensus         1 l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q   79 (213)
T cd03259           1 LELKGLSKTYG-SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQ   79 (213)
T ss_pred             CeeeeeEEEeC-CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcC
Confidence            46899999995 457999999999999999999999999999999999999999999988763         25899999


Q ss_pred             ccCCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 026376          100 HHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE  173 (239)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDE  173 (239)
                      ++...  ...+..+++..  ....    ...+++.++++.+++.. ..++++.+||||||||++|||||+.+|++|||||
T Consensus        80 ~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDE  156 (213)
T cd03259          80 DYALF--PHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEG-LLNRYPHELSGGQQQRVALARALAREPSLLLLDE  156 (213)
T ss_pred             chhhc--cCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChh-hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            86422  22334433321  1111    11345778999999974 4578889999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376          174 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       174 Pt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~  223 (239)
                      ||++||+.++..+.+.+.+.    +.|||++|||++++..+||++++|++|+++
T Consensus       157 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~  210 (213)
T cd03259         157 PLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIV  210 (213)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence            99999999999988877653    569999999999999999999999999986

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=100.00  E-value=1.9e-49  Score=338.54  Aligned_cols=198  Identities=25%  Similarity=0.293  Sum_probs=166.2

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------eEEEEEee
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------VRIAVFSQ   99 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------~~~~~~~q   99 (239)
                      .++|+++|++++|+ ++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.      ..++|++|
T Consensus        10 ~~~l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q   88 (257)
T PRK11247         10 GTPLLLNAVSKRYG-ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQ   88 (257)
T ss_pred             CCcEEEEEEEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEec
Confidence            45799999999995 457999999999999999999999999999999999999999999988663      25899999


Q ss_pred             ccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 026376          100 HHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD  179 (239)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD  179 (239)
                      ++..  ....+..+++..........++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||++||
T Consensus        89 ~~~l--~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD  165 (257)
T PRK11247         89 DARL--LPWKKVIDNVGLGLKGQWRDAALQALAAVGLAD-RANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALD  165 (257)
T ss_pred             CccC--CCCCcHHHHHHhcccchHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence            8632  222345555432211223456788999999974 4578899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCC
Q 026376          180 LDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGT  228 (239)
Q Consensus       180 ~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~  228 (239)
                      +.++..+.+.|.+    .+.|||+||||++++..+||++++|++|+++ ..++
T Consensus       166 ~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~-~~~~  217 (257)
T PRK11247        166 ALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIG-LDLT  217 (257)
T ss_pred             HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-eecc
Confidence            9999988877754    2579999999999999999999999999986 3443

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=100.00  E-value=1.3e-49  Score=336.11  Aligned_cols=202  Identities=27%  Similarity=0.420  Sum_probs=166.9

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------------eEE
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------VRI   94 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~~~   94 (239)
                      ++++|++++|++++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.              ..+
T Consensus         1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i   80 (241)
T cd03256           1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI   80 (241)
T ss_pred             CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence            468999999954257999999999999999999999999999999999999999999988652              248


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHh--------------CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRC--------------FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK  160 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lar  160 (239)
                      +|++|++...  ...+...++...              ......+++.++++.+++.. ..++++.+|||||||||+|||
T Consensus        81 ~~~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~  157 (241)
T cd03256          81 GMIFQQFNLI--ERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLD-KAYQRADQLSGGQQQRVAIAR  157 (241)
T ss_pred             EEEcccCccc--ccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChh-hhCCCcccCCHHHHHHHHHHH
Confidence            9999986422  223343333210              00112345778899999964 567889999999999999999


Q ss_pred             HhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          161 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       161 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      ||+.+|++|||||||++||+.++..+.+.|.+.    +.|||++|||++++..+||++++|++|+++ +.|+++++.+
T Consensus       158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~~  234 (241)
T cd03256         158 ALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV-FDGPPAELTD  234 (241)
T ss_pred             HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-eecCHHHhhH
Confidence            999999999999999999999999888877643    569999999999999999999999999997 6788888744

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2e-49  Score=351.24  Aligned_cols=202  Identities=24%  Similarity=0.339  Sum_probs=168.2

Q ss_pred             eEEEEeeEEEcC--C-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------
Q 026376           28 IISFSDASFGYP--G-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------   91 (239)
Q Consensus        28 ~l~~~~l~~~y~--~-~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------   91 (239)
                      ||+++|++++|+  + +..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.             
T Consensus         1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~   80 (343)
T PRK11153          1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA   80 (343)
T ss_pred             CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence            589999999996  1 356999999999999999999999999999999999999999999988752             


Q ss_pred             -eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 026376           92 -VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK  164 (239)
Q Consensus        92 -~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~  164 (239)
                       ..++|++|++..  ....+..+++..  .....    ..+++.++++.+++.+ ..++++.+|||||||||+|||||+.
T Consensus        81 ~~~ig~v~q~~~l--~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGq~qRv~lAraL~~  157 (343)
T PRK11153         81 RRQIGMIFQHFNL--LSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSD-KADRYPAQLSGGQKQRVAIARALAS  157 (343)
T ss_pred             hcCEEEEeCCCcc--CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHHHHc
Confidence             359999998642  222344443321  11111    1346778999999974 5678899999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      +|++|||||||++||+.++..+.+.|++.    +.|||++|||++++..+||++++|++|+++ +.|+++++.
T Consensus       158 ~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~-~~g~~~~~~  229 (343)
T PRK11153        158 NPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLV-EQGTVSEVF  229 (343)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence            99999999999999999999888877653    569999999999999999999999999997 678877664

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=100.00  E-value=1.6e-49  Score=349.88  Aligned_cols=208  Identities=20%  Similarity=0.313  Sum_probs=171.0

Q ss_pred             CCCeEEEEeeEEEcCC------------CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-
Q 026376           25 GPPIISFSDASFGYPG------------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-   91 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~------------~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-   91 (239)
                      .+++|+++||++.|+.            ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++. 
T Consensus         5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~   84 (331)
T PRK15079          5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKD   84 (331)
T ss_pred             CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEE
Confidence            3568999999999952            135899999999999999999999999999999999999999999988763 


Q ss_pred             -------------eEEEEEeeccCCCCCCCCcHHHHHHH---hC-CCCc----HHHHHHHHHhcCCCcccccCCCCCCCh
Q 026376           92 -------------VRIAVFSQHHVDGLDLSSNPLLYMMR---CF-PGVP----EQKLRAHLGSFGVTGNLALQPMYTLSG  150 (239)
Q Consensus        92 -------------~~~~~~~q~~~~~~~~~~~~~~~~~~---~~-~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSg  150 (239)
                                   ..++|++|++...++...+...++..   .+ ....    .+++.++++.+++.....++++.+|||
T Consensus        85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSg  164 (331)
T PRK15079         85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSG  164 (331)
T ss_pred             CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCH
Confidence                         25999999974333333444444321   11 1112    345678899999964556889999999


Q ss_pred             HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeC
Q 026376          151 GQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFH  226 (239)
Q Consensus       151 Gqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~  226 (239)
                      ||||||+|||||+.+|++||+||||++||+.++..+++.|++.    +.|||+||||++++.++||++++|.+|+++ ..
T Consensus       165 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~iv-e~  243 (331)
T PRK15079        165 GQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAV-EL  243 (331)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EE
Confidence            9999999999999999999999999999999998888777543    569999999999999999999999999997 56


Q ss_pred             CChhHHH
Q 026376          227 GTFHDYK  233 (239)
Q Consensus       227 g~~~~~~  233 (239)
                      |+.+++.
T Consensus       244 g~~~~i~  250 (331)
T PRK15079        244 GTYDEVY  250 (331)
T ss_pred             cCHHHHH
Confidence            7766653

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=100.00  E-value=1.1e-49  Score=357.99  Aligned_cols=201  Identities=26%  Similarity=0.434  Sum_probs=170.3

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEE
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA   95 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~   95 (239)
                      ++|+++|++++|+ ++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.+++.           ..++
T Consensus         2 ~~L~~~nls~~y~-~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig   80 (402)
T PRK09536          2 PMIDVSDLSVEFG-DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA   80 (402)
T ss_pred             ceEEEeeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence            4799999999995 567999999999999999999999999999999999999999999998763           3589


Q ss_pred             EEeeccCCCCCCCCcHHHHHHHh-------CC---CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 026376           96 VFSQHHVDGLDLSSNPLLYMMRC-------FP---GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK  165 (239)
Q Consensus        96 ~~~q~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~  165 (239)
                      |++|++...+.  .+..+++...       +.   ....+++.++++.+++. .+.++++.+||||||||++|||||+++
T Consensus        81 ~v~q~~~l~~~--~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~-~~~~~~~~~LSgGerQRv~IArAL~~~  157 (402)
T PRK09536         81 SVPQDTSLSFE--FDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVA-QFADRPVTSLSGGERQRVLLARALAQA  157 (402)
T ss_pred             EEccCCCCCCC--CCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence            99998643322  3444433211       11   12245678899999997 466889999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376          166 PHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       166 p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                      |++|||||||+|||+.++..+++.|+++   +.|||++|||++++.++||++++|++|+++ ..|+++++
T Consensus       158 P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv-~~G~~~ev  226 (402)
T PRK09536        158 TPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVR-AAGPPADV  226 (402)
T ss_pred             CCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EecCHHHH
Confidence            9999999999999999988887776643   569999999999999999999999999997 67998875

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-49  Score=349.34  Aligned_cols=207  Identities=21%  Similarity=0.312  Sum_probs=170.8

Q ss_pred             CCeEEEEeeEEEcCC---------CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----
Q 026376           26 PPIISFSDASFGYPG---------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----   91 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~---------~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----   91 (239)
                      +++|+++||++.|+.         ...+|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++.     
T Consensus         3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~   82 (327)
T PRK11308          3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA   82 (327)
T ss_pred             CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence            458999999999952         246899999999999999999999999999999999999999999988762     


Q ss_pred             ---------eEEEEEeeccCCCCCCCCcHHHHHH---HhCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHH
Q 026376           92 ---------VRIAVFSQHHVDGLDLSSNPLLYMM---RCFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR  155 (239)
Q Consensus        92 ---------~~~~~~~q~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr  155 (239)
                               ..++|++|++...++...+....+.   .....    ...+++.++++.+|+.....++++++||||||||
T Consensus        83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QR  162 (327)
T PRK11308         83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQR  162 (327)
T ss_pred             CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHH
Confidence                     2599999997433443334332221   11111    1235678899999996445678899999999999


Q ss_pred             HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhH
Q 026376          156 VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD  231 (239)
Q Consensus       156 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~  231 (239)
                      |+|||||+.+|++||+||||++||..++..+++.|.+.    +.|||+||||+..+.++||++++|.+|+++ ..|+.++
T Consensus       163 v~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv-e~g~~~~  241 (327)
T PRK11308        163 IAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV-EKGTKEQ  241 (327)
T ss_pred             HHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHH
Confidence            99999999999999999999999999999888877543    679999999999999999999999999997 5677766


Q ss_pred             HH
Q 026376          232 YK  233 (239)
Q Consensus       232 ~~  233 (239)
                      +.
T Consensus       242 ~~  243 (327)
T PRK11308        242 IF  243 (327)
T ss_pred             Hh
Confidence            54

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-49  Score=342.16  Aligned_cols=203  Identities=30%  Similarity=0.406  Sum_probs=168.7

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEE
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA   95 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~   95 (239)
                      ++|+++|+++.|+++..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.           ..++
T Consensus         3 ~~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~   82 (274)
T PRK13647          3 NIIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG   82 (274)
T ss_pred             ceEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence            37999999999964456999999999999999999999999999999999999999999998763           2589


Q ss_pred             EEeeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 026376           96 VFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII  169 (239)
Q Consensus        96 ~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ll  169 (239)
                      |++|++...+ +..+...++..  .....    ..+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|
T Consensus        83 ~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgG~~qrv~laraL~~~p~ll  160 (274)
T PRK13647         83 LVFQDPDDQV-FSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWD-FRDKPPYHLSYGQKKRVAIAGVLAMDPDVI  160 (274)
T ss_pred             EEecChhhhh-ccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHH-HhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence            9999863111 12344444321  11111    1345778999999974 567889999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376          170 LLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       170 llDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                      ||||||++||+.++..+.+.+.+.   +.|||++|||++++.++||++++|++|+++ +.|+++++
T Consensus       161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~  225 (274)
T PRK13647        161 VLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVL-AEGDKSLL  225 (274)
T ss_pred             EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHh
Confidence            999999999999999888877643   579999999999999999999999999997 57887654

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.8e-49  Score=344.00  Aligned_cols=205  Identities=25%  Similarity=0.369  Sum_probs=168.9

Q ss_pred             eEEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------
Q 026376           28 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------   91 (239)
Q Consensus        28 ~l~~~~l~~~y~~~----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------   91 (239)
                      ||+++|++++|+++    +.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|++++.            
T Consensus         1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   80 (288)
T PRK13643          1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK   80 (288)
T ss_pred             CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence            58999999999632    24899999999999999999999999999999999999999999988763            


Q ss_pred             ---eEEEEEeeccCCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHh
Q 026376           92 ---VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT  162 (239)
Q Consensus        92 ---~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral  162 (239)
                         ..++|++|++...+ +..+...++...  .....    ..++.++++.+++.....++++.+||||||||++|||||
T Consensus        81 ~~~~~ig~v~q~~~~~l-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL  159 (288)
T PRK13643         81 PVRKKVGVVFQFPESQL-FEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL  159 (288)
T ss_pred             HHHhhEEEEecCcchhc-ccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence               14899999863222 123444443211  11111    245778899999964456789999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          163 FKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       163 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      +.+|++|||||||++||+.++..+.+.+.+   .+.|||++|||++++..+||+|++|++|+++ +.|+++++..
T Consensus       160 ~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~-~~g~~~~~~~  233 (288)
T PRK13643        160 AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHII-SCGTPSDVFQ  233 (288)
T ss_pred             HhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHHc
Confidence            999999999999999999999988877654   3579999999999999999999999999997 6899888753

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=100.00  E-value=1.6e-49  Score=334.70  Aligned_cols=201  Identities=25%  Similarity=0.378  Sum_probs=166.2

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEEEE
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIAV   96 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~~~   96 (239)
                      |+++|++++|+ +..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.            ..++|
T Consensus         1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~   79 (236)
T cd03219           1 LEVRGLTKRFG-GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR   79 (236)
T ss_pred             CeeeeeEEEEC-CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence            46899999995 456999999999999999999999999999999999999999999988653            24899


Q ss_pred             EeeccCCCCCCCCcHHHHHHH---hCCC-------------CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 026376           97 FSQHHVDGLDLSSNPLLYMMR---CFPG-------------VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK  160 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~---~~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lar  160 (239)
                      ++|++...  ...+..+++..   ....             ...+++.++++.+++.. ..++++.+||||||||++|||
T Consensus        80 v~q~~~l~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~  156 (236)
T cd03219          80 TFQIPRLF--PELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD-LADRPAGELSYGQQRRLEIAR  156 (236)
T ss_pred             Eecccccc--cCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccc-hhhCChhhCCHHHHHHHHHHH
Confidence            99986422  22233333321   1101             11335778899999974 567889999999999999999


Q ss_pred             HhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          161 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       161 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      ||+.+|++|||||||++||+.++..+.+.+++   .+.|||++|||++++..+||++++|++|++. ..|+++++..
T Consensus       157 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~  232 (236)
T cd03219         157 ALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVI-AEGTPDEVRN  232 (236)
T ss_pred             HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEE-eecCHHHhcc
Confidence            99999999999999999999999988887765   3569999999999999999999999999997 6788887643

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=100.00  E-value=2.9e-49  Score=352.99  Aligned_cols=205  Identities=24%  Similarity=0.357  Sum_probs=172.2

Q ss_pred             CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEE
Q 026376           25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIA   95 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~   95 (239)
                      ..++|+++|+++.|+ +..+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.+++.         ..++
T Consensus        11 ~~~~L~l~~l~~~~~-~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig   89 (375)
T PRK09452         11 LSPLVELRGISKSFD-GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVN   89 (375)
T ss_pred             CCceEEEEEEEEEEC-CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence            345799999999995 456899999999999999999999999999999999999999999998774         3599


Q ss_pred             EEeeccCCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 026376           96 VFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII  169 (239)
Q Consensus        96 ~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ll  169 (239)
                      |+||++..  ....++.+++...  .....    .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|
T Consensus        90 ~vfQ~~~l--fp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~p~~LSgGq~QRVaLARaL~~~P~ll  166 (375)
T PRK09452         90 TVFQSYAL--FPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEE-FAQRKPHQLSGGQQQRVAIARAVVNKPKVL  166 (375)
T ss_pred             EEecCccc--CCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            99998642  2233455544321  11111    346788999999974 567889999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          170 LLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       170 llDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      ||||||++||...+..+.+.|++    .+.|+|+||||.+++..+||++++|++|++. ..|+++++.+
T Consensus       167 LLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~-~~g~~~~i~~  234 (375)
T PRK09452        167 LLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIE-QDGTPREIYE  234 (375)
T ss_pred             EEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence            99999999999999988777754    3679999999999999999999999999997 5688877654

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.9e-49  Score=342.55  Aligned_cols=205  Identities=24%  Similarity=0.391  Sum_probs=168.7

Q ss_pred             eEEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------
Q 026376           28 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------   91 (239)
Q Consensus        28 ~l~~~~l~~~y~~~----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------   91 (239)
                      +|+++||++.|++.    +.+|+||||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.            
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (287)
T PRK13637          2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI   81 (287)
T ss_pred             EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence            48999999999642    36999999999999999999999999999999999999999999987652            


Q ss_pred             -eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCc-ccccCCCCCCChHHHHHHHHHHHhc
Q 026376           92 -VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTG-NLALQPMYTLSGGQKSRVAFAKITF  163 (239)
Q Consensus        92 -~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkqrv~laral~  163 (239)
                       ..++|++|++...+ +..+...++..  ......    .+++.++++.+|+.. ...++++.+||||||||++|||||+
T Consensus        82 ~~~ig~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~  160 (287)
T PRK13637         82 RKKVGLVFQYPEYQL-FEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVA  160 (287)
T ss_pred             hhceEEEecCchhcc-ccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHH
Confidence             24899999863221 22344444321  111112    245788999999961 3567889999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          164 KKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      .+|++|||||||++||+.++..+.+.+++.    +.|||+||||++++..+||++++|++|+++ +.|+++++.+
T Consensus       161 ~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~-~~g~~~~~~~  234 (287)
T PRK13637        161 MEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCE-LQGTPREVFK  234 (287)
T ss_pred             cCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHh
Confidence            999999999999999999999888877543    569999999999999999999999999997 6788887643

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.2e-49  Score=336.86  Aligned_cols=202  Identities=27%  Similarity=0.388  Sum_probs=167.0

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------------eE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------VR   93 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~~   93 (239)
                      ||+++|++++|+++..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.              ..
T Consensus         1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   80 (243)
T TIGR02315         1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR   80 (243)
T ss_pred             CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence            4789999999952456999999999999999999999999999999999999999999988752              23


Q ss_pred             EEEEeeccCCCCCCCCcHHHHHHHhC--------------CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHH
Q 026376           94 IAVFSQHHVDGLDLSSNPLLYMMRCF--------------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFA  159 (239)
Q Consensus        94 ~~~~~q~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la  159 (239)
                      ++|++|++...  ...+...++....              .....+++.++++.+++.. ..++++.+||||||||++||
T Consensus        81 i~~v~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la  157 (243)
T TIGR02315        81 IGMIFQHYNLI--ERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLAD-KAYQRADQLSGGQQQRVAIA  157 (243)
T ss_pred             eEEEcCCCccc--ccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHh-hhcCCcccCCHHHHHHHHHH
Confidence            89999986322  2233444332100              0112346778899999964 55788999999999999999


Q ss_pred             HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          160 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       160 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      |||+.+|++|||||||++||+.++..+.+.|.+.    +.|||+||||++++.++||++++|++|+++ ..|+++++.
T Consensus       158 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~  234 (243)
T TIGR02315       158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV-FDGAPSELD  234 (243)
T ss_pred             HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEE-ecCCHHHhC
Confidence            9999999999999999999999999888877643    569999999999999999999999999997 678887763

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.2e-49  Score=345.92  Aligned_cols=209  Identities=22%  Similarity=0.300  Sum_probs=170.9

Q ss_pred             CCCCCeEEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------
Q 026376           23 RPGPPIISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------   91 (239)
Q Consensus        23 ~~~~~~l~~~~l~~~y~~~----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------   91 (239)
                      .+++++|+++|+++.|++.    ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++++.       
T Consensus        16 ~~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~   95 (320)
T PRK13631         16 LSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKN   95 (320)
T ss_pred             CCCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccc
Confidence            3456789999999999632    35899999999999999999999999999999999999999999987641       


Q ss_pred             --------------------eEEEEEeeccCCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCC
Q 026376           92 --------------------VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPM  145 (239)
Q Consensus        92 --------------------~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~  145 (239)
                                          ..++|++|++...+ +..+...++...  .....    ..++.++++.+++.....++++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~  174 (320)
T PRK13631         96 NHELITNPYSKKIKNFKELRRRVSMVFQFPEYQL-FKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSP  174 (320)
T ss_pred             cccccccccccccchHHHHHhcEEEEEECchhcc-ccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence                                24899999863222 123444443211  11111    2456788999999634567889


Q ss_pred             CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeE
Q 026376          146 YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKA  222 (239)
Q Consensus       146 ~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i  222 (239)
                      .+||||||||++|||||+.+|++|||||||++||+.++..+.+.|.+   .+.|||+||||++++..+||++++|++|++
T Consensus       175 ~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i  254 (320)
T PRK13631        175 FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKI  254 (320)
T ss_pred             ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence            99999999999999999999999999999999999999998887764   357999999999999899999999999999


Q ss_pred             EeeCCChhHHH
Q 026376          223 TPFHGTFHDYK  233 (239)
Q Consensus       223 ~~~~g~~~~~~  233 (239)
                      + ..|+++++.
T Consensus       255 ~-~~g~~~~~~  264 (320)
T PRK13631        255 L-KTGTPYEIF  264 (320)
T ss_pred             E-EeCCHHHHh
Confidence            7 678888763

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.8e-49  Score=345.01  Aligned_cols=204  Identities=24%  Similarity=0.298  Sum_probs=168.2

Q ss_pred             eEEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------
Q 026376           28 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------   91 (239)
Q Consensus        28 ~l~~~~l~~~y~~~----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------   91 (239)
                      +|+++|++++|+++    ..+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|++++.            
T Consensus         2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (305)
T PRK13651          2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE   81 (305)
T ss_pred             EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence            48999999999643    25899999999999999999999999999999999999999999987531            


Q ss_pred             -----------------------eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCccccc
Q 026376           92 -----------------------VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLAL  142 (239)
Q Consensus        92 -----------------------~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~  142 (239)
                                             ..++|++|++...+ +..+..+++..  .....    ..+++.++++.+|+.....+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l-~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~  160 (305)
T PRK13651         82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQL-FEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ  160 (305)
T ss_pred             ccccccccccccccccchHHHHHhceEEEeeCccccc-ccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence                                   24899999863222 22344444421  11111    13467889999999644568


Q ss_pred             CCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeC
Q 026376          143 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSE  219 (239)
Q Consensus       143 ~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~  219 (239)
                      +++.+|||||||||+|||||+.+|++|||||||++||+.++..+++.+.+   .+.|||+||||++++..+|||+++|++
T Consensus       161 ~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~  240 (305)
T PRK13651        161 RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKD  240 (305)
T ss_pred             CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEEC
Confidence            89999999999999999999999999999999999999999888877754   367999999999999999999999999


Q ss_pred             CeEEeeCCChhHHH
Q 026376          220 GKATPFHGTFHDYK  233 (239)
Q Consensus       220 G~i~~~~g~~~~~~  233 (239)
                      |+++ +.|+++++.
T Consensus       241 G~i~-~~g~~~~~~  253 (305)
T PRK13651        241 GKII-KDGDTYDIL  253 (305)
T ss_pred             CEEE-EECCHHHHh
Confidence            9997 678887754

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.9e-49  Score=353.10  Aligned_cols=202  Identities=23%  Similarity=0.324  Sum_probs=169.1

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEe
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS   98 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~   98 (239)
                      +|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++.         ..++|++
T Consensus         3 ~l~i~~l~~~~~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~   81 (369)
T PRK11000          3 SVTLRNVTKAYG-DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVF   81 (369)
T ss_pred             EEEEEEEEEEeC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEe
Confidence            589999999995 457999999999999999999999999999999999999999999998763         2599999


Q ss_pred             eccCCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376           99 QHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD  172 (239)
Q Consensus        99 q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD  172 (239)
                      |++...  ...+..+++...  ....    ..+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||||
T Consensus        82 Q~~~l~--~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLD  158 (369)
T PRK11000         82 QSYALY--PHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAH-LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD  158 (369)
T ss_pred             CCcccC--CCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChh-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            986422  223444443211  1111    1346788999999974 567889999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          173 EPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       173 EPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |||++||+.++..+.+.|++.    +.|+|+||||++++..+||++++|++|++. ..|+++++..
T Consensus       159 EPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~-~~g~~~~i~~  223 (369)
T PRK11000        159 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVA-QVGKPLELYH  223 (369)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence            999999999998887766543    679999999999999999999999999997 5688877643

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=100.00  E-value=3.6e-49  Score=337.01  Aligned_cols=205  Identities=20%  Similarity=0.295  Sum_probs=167.3

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce--------------
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--------------   92 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~--------------   92 (239)
                      ++|+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++..              
T Consensus         5 ~~l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~   83 (258)
T PRK11701          5 PLLSVRGLTKLYGP-RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER   83 (258)
T ss_pred             ceEEEeeeEEEcCC-ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence            47999999999954 579999999999999999999999999999999999999999999876632              


Q ss_pred             ------EEEEEeeccCCCCCCCCcHHHHHHH---hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHH
Q 026376           93 ------RIAVFSQHHVDGLDLSSNPLLYMMR---CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFA  159 (239)
Q Consensus        93 ------~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la  159 (239)
                            .++|++|++...+....+...++..   ....    ....++.++++.+++.....++++.+||||||||++||
T Consensus        84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~la  163 (258)
T PRK11701         84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIA  163 (258)
T ss_pred             HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHH
Confidence                  3899999863222222222222211   1111    12345678899999964345788999999999999999


Q ss_pred             HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          160 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       160 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      |||+.+|++|||||||++||+.++..+.+.+++    .+.|||++|||++++..+||++++|++|+++ +.|+++++.
T Consensus       164 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~~  240 (258)
T PRK11701        164 RNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVV-ESGLTDQVL  240 (258)
T ss_pred             HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence            999999999999999999999999988887654    2569999999999999999999999999997 578877664

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=100.00  E-value=2.2e-49  Score=327.98  Aligned_cols=191  Identities=23%  Similarity=0.339  Sum_probs=161.8

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEee
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ   99 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~q   99 (239)
                      |+++|++++|+ +..+|+++||++++|++++|+||||||||||+++|+|+++|++|+|.+++.         ..++|++|
T Consensus         1 l~~~~l~~~~~-~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q   79 (208)
T cd03268           1 LKTNDLTKTYG-KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIE   79 (208)
T ss_pred             CEEEEEEEEEC-CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecC
Confidence            47899999995 457999999999999999999999999999999999999999999998764         25899999


Q ss_pred             ccCCCCCCCCcHHHHHHH--hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 026376          100 HHVDGLDLSSNPLLYMMR--CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH  177 (239)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~  177 (239)
                      ++..  ....+..+++..  .......+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||||++
T Consensus        80 ~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~  156 (208)
T cd03268          80 APGF--YPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKD-SAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNG  156 (208)
T ss_pred             CCcc--CccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHH-HHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccc
Confidence            8632  222344444321  111234567888999999964 45788899999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376          178 LDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       178 LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~  223 (239)
                      ||+.++..+.+.+.+   .+.|||++|||++++..+||++++|++|+++
T Consensus       157 LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~  205 (208)
T cd03268         157 LDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLI  205 (208)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEE
Confidence            999999988887764   3579999999999999999999999999986

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.4e-49  Score=343.57  Aligned_cols=204  Identities=26%  Similarity=0.356  Sum_probs=168.4

Q ss_pred             eEEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------
Q 026376           28 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------   91 (239)
Q Consensus        28 ~l~~~~l~~~y~~~----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------   91 (239)
                      .++++|++++|++.    ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.            
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   81 (290)
T PRK13634          2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK   81 (290)
T ss_pred             EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence            38999999999642    45999999999999999999999999999999999999999999988763            


Q ss_pred             ---eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHh
Q 026376           92 ---VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT  162 (239)
Q Consensus        92 ---~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral  162 (239)
                         ..++|++|++...+. ..+...++..  ......    .+++.++++.+++.....++++.+|||||||||+|||||
T Consensus        82 ~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL  160 (290)
T PRK13634         82 PLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVL  160 (290)
T ss_pred             HHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence               248999998632221 2244444321  111111    245778999999964456788999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          163 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       163 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      +.+|++|||||||++||+.++..+.+.|++.    +.|||++|||++++..+|||+++|++|+++ +.|+++++.
T Consensus       161 ~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~-~~g~~~~~~  234 (290)
T PRK13634        161 AMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVF-LQGTPREIF  234 (290)
T ss_pred             HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHh
Confidence            9999999999999999999999888777543    579999999999999999999999999997 678887764

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=100.00  E-value=3.3e-49  Score=351.28  Aligned_cols=202  Identities=22%  Similarity=0.307  Sum_probs=170.5

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCc--eeEEecCc---------eEEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS--GTVFRSAK---------VRIAV   96 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~--G~i~~~~~---------~~~~~   96 (239)
                      .|+++|++++|+ +..+|+|+||+|.+||+++|+|||||||||||++|+|+++|++  |+|.+++.         ..++|
T Consensus         5 ~l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~   83 (362)
T TIGR03258         5 GIRIDHLRVAYG-ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLAL   83 (362)
T ss_pred             EEEEEEEEEEEC-CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEE
Confidence            489999999995 4579999999999999999999999999999999999999999  99998763         35999


Q ss_pred             EeeccCCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 026376           97 FSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL  170 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~lll  170 (239)
                      ++|++...  ...++.+++..  ......    ..++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||
T Consensus        84 vfQ~~~l~--p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-~~~~~~~~LSgGq~QRvaLARAL~~~P~llL  160 (362)
T TIGR03258        84 LFQNYALF--PHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGD-AAAHLPAQLSGGMQQRIAIARAIAIEPDVLL  160 (362)
T ss_pred             EECCcccC--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCc-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            99986432  33344444431  111111    346788999999974 5788999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHhh---c--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          171 LDEPSNHLDLDAVEALIQGLVL---F--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       171 lDEPt~~LD~~~~~~l~~~l~~---~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |||||++||+..+..+.+.|++   .  +.|+|+||||++++..+||++++|++|+++ ..|+++++.+
T Consensus       161 LDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~-~~g~~~~~~~  228 (362)
T TIGR03258       161 LDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLA-AHGEPQALYD  228 (362)
T ss_pred             EcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence            9999999999999988776653   2  569999999999999999999999999997 5788887754

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.9e-50  Score=323.27  Aligned_cols=207  Identities=20%  Similarity=0.296  Sum_probs=168.7

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVF   97 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~~~   97 (239)
                      ||++.+++++|+....+++||||+++.|+++||+|||||||||+||+|++++.|++|.|+.++-          ..+|.+
T Consensus         1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl   80 (245)
T COG4555           1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL   80 (245)
T ss_pred             CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhccee
Confidence            6899999999965444899999999999999999999999999999999999999999998762          357777


Q ss_pred             eeccCCCCCCCCc-HHHHHHHhC---CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 026376           98 SQHHVDGLDLSSN-PLLYMMRCF---PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE  173 (239)
Q Consensus        98 ~q~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDE  173 (239)
                      +-+...+-.++.. .+.++...+   ....+.++.++.+.+++.+ ..++++..+|.||||||+|||||+++|++++|||
T Consensus        81 ~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~-~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDE  159 (245)
T COG4555          81 FGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLE-YLDRRVGEFSTGMKQKVAIARALVHDPSILVLDE  159 (245)
T ss_pred             cCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHH-HHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcC
Confidence            7332211112211 122332222   1223567888999999974 5688999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHHh
Q 026376          174 PSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKML  236 (239)
Q Consensus       174 Pt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~  236 (239)
                      ||||||..+...+.+.+++   .+.+||++||++++++.+||+++++++|+++ +.|+.+++..+.
T Consensus       160 P~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv-~~gs~~~l~~r~  224 (245)
T COG4555         160 PTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVV-LEGSIEALDART  224 (245)
T ss_pred             CCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEE-EcCCHHHHHHHH
Confidence            9999999998877666654   4679999999999999999999999999997 789988876554

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=100.00  E-value=4.2e-49  Score=338.61  Aligned_cols=202  Identities=24%  Similarity=0.377  Sum_probs=167.8

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------------e
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------V   92 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~   92 (239)
                      ++|+++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.              .
T Consensus         6 ~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~   84 (269)
T PRK11831          6 NLVDMRGVSFTRG-NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK   84 (269)
T ss_pred             ceEEEeCeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence            4799999999995 457999999999999999999999999999999999999999999988752              2


Q ss_pred             EEEEEeeccCCCCCCCCcHHHHHHH---hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 026376           93 RIAVFSQHHVDGLDLSSNPLLYMMR---CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK  165 (239)
Q Consensus        93 ~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~  165 (239)
                      .++|++|++...  ...+...++..   ......    ..++.++++.+++.+ ..++++.+||||||||++|||||+.+
T Consensus        85 ~i~~v~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qrv~laral~~~  161 (269)
T PRK11831         85 RMSMLFQSGALF--TDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRG-AAKLMPSELSGGMARRAALARAIALE  161 (269)
T ss_pred             cEEEEecccccC--CCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            489999986322  22233433321   111111    235677899999974 56788999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          166 PHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       166 p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      |++|||||||++||+.++..+.+.+++.    +.|||+||||++++..+||++++|++|+++ +.|+++++.
T Consensus       162 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~  232 (269)
T PRK11831        162 PDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIV-AHGSAQALQ  232 (269)
T ss_pred             CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEE-EeCCHHHHh
Confidence            9999999999999999999888877653    569999999999999999999999999997 678887764

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=100.00  E-value=1.1e-49  Score=367.00  Aligned_cols=206  Identities=33%  Similarity=0.593  Sum_probs=179.2

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCC
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD  106 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~  106 (239)
                      .+|+++|+++.| +++.+|+++||+|.+|+++||||+||||||||||+|+|...|++|+|......+++|++|++.....
T Consensus         2 ~~i~~~~ls~~~-g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~   80 (530)
T COG0488           2 SMITLENLSLAY-GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPE   80 (530)
T ss_pred             ceEEEeeeEEee-CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCC
Confidence            479999999999 5678999999999999999999999999999999999999999999999888899999999753321


Q ss_pred             CCCcHHHHHHHh-----------------C-------------------CCCcHHHHHHHHHhcCCCcccccCCCCCCCh
Q 026376          107 LSSNPLLYMMRC-----------------F-------------------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSG  150 (239)
Q Consensus       107 ~~~~~~~~~~~~-----------------~-------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg  150 (239)
                        .++...+...                 .                   ....+.++..+|..+|+...  ++++++|||
T Consensus        81 --~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~--~~~~~~LSG  156 (530)
T COG0488          81 --KTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE--DRPVSSLSG  156 (530)
T ss_pred             --ccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc--cCchhhcCH
Confidence              1222211100                 0                   00123567788889999754  789999999


Q ss_pred             HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChh
Q 026376          151 GQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFH  230 (239)
Q Consensus       151 Gqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~  230 (239)
                      |||.||+||+||+.+|++|||||||||||.+++.|+.+.|+++.+|+|+||||.+|+..+|++|+.++.|++..|.|+|+
T Consensus       157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~  236 (530)
T COG0488         157 GWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYS  236 (530)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecCCHH
Confidence            99999999999999999999999999999999999999999987899999999999999999999999999999999999


Q ss_pred             HHHHHhh
Q 026376          231 DYKKMLQ  237 (239)
Q Consensus       231 ~~~~~~~  237 (239)
                      .|.++..
T Consensus       237 ~~~~~r~  243 (530)
T COG0488         237 SYLEQKA  243 (530)
T ss_pred             HHHHHHH
Confidence            9987764

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=100.00  E-value=3e-49  Score=329.71  Aligned_cols=200  Identities=23%  Similarity=0.347  Sum_probs=165.3

Q ss_pred             EEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEEEE
Q 026376           29 ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVF   97 (239)
Q Consensus        29 l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~~~   97 (239)
                      |+++|+++.|+++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+++.          ..++|+
T Consensus         1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v   80 (220)
T cd03263           1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC   80 (220)
T ss_pred             CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence            4789999999642 57999999999999999999999999999999999999999999988764          248999


Q ss_pred             eeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 026376           98 SQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL  171 (239)
Q Consensus        98 ~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llll  171 (239)
                      +|++...  ...+...++..  .....    ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||
T Consensus        81 ~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~llll  157 (220)
T cd03263          81 PQFDALF--DELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTD-KANKRARTLSGGMKRKLSLAIALIGGPSVLLL  157 (220)
T ss_pred             cCcCCcc--ccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HHhChhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            9986322  22333333321  11111    1245778899999964 55778899999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376          172 DEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       172 DEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                      ||||++||+.++..+.+.+.+.  +.|||++|||++++..+||++++|++|+++ ..|+++++
T Consensus       158 DEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~  219 (220)
T cd03263         158 DEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLR-CIGSPQEL  219 (220)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEE-ecCCHHHc
Confidence            9999999999999998888754  369999999999999999999999999997 67887654

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4e-49  Score=341.67  Aligned_cols=204  Identities=26%  Similarity=0.381  Sum_probs=168.0

Q ss_pred             eEEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------
Q 026376           28 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------   91 (239)
Q Consensus        28 ~l~~~~l~~~y~~~----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------   91 (239)
                      +|+++|+++.|++.    +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.            
T Consensus         2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (287)
T PRK13641          2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK   81 (287)
T ss_pred             EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence            58999999999632    35899999999999999999999999999999999999999999988763            


Q ss_pred             ---eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHh
Q 026376           92 ---VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT  162 (239)
Q Consensus        92 ---~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral  162 (239)
                         ..++|++|++...+. ..+..+++..  .....    ..+++.++++.+++.....++++.+||||||||++|||||
T Consensus        82 ~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral  160 (287)
T PRK13641         82 KLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM  160 (287)
T ss_pred             HHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHH
Confidence               148999998621111 2344444321  11111    2345788999999963456789999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          163 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       163 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      +.+|++|||||||+|||+.++..+.+.+.+.   +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus       161 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~  233 (287)
T PRK13641        161 AYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLI-KHASPKEIF  233 (287)
T ss_pred             HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence            9999999999999999999999888877653   569999999999999999999999999997 678887764

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.9e-49  Score=333.65  Aligned_cols=201  Identities=22%  Similarity=0.329  Sum_probs=167.3

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV   96 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~   96 (239)
                      +|+++|++++|+ +..+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.           ..++|
T Consensus         3 ~l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~   81 (241)
T PRK14250          3 EIEFKEVSYSSF-GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM   81 (241)
T ss_pred             eEEEEeEEEEeC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence            589999999995 456999999999999999999999999999999999999999999988763           25899


Q ss_pred             EeeccCCCCCCCCcHHHHHHH--hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 026376           97 FSQHHVDGLDLSSNPLLYMMR--CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP  174 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEP  174 (239)
                      ++|++... .  .+...++..  ........++.++++.+++.....++++.+||||||||++|||||+.+|++||||||
T Consensus        82 ~~q~~~~~-~--~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP  158 (241)
T PRK14250         82 VFQQPHLF-E--GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEP  158 (241)
T ss_pred             EecCchhc-h--hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            99986321 1  244443321  111222456788999999963456788999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          175 SNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       175 t~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      |++||+.++..+.+.|++    .+.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus       159 t~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  220 (241)
T PRK14250        159 TSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILV-EYAKTYDFF  220 (241)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEE-EeCCHHHHh
Confidence            999999999988877764    2679999999999999999999999999997 567766653

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=100.00  E-value=3e-49  Score=350.82  Aligned_cols=202  Identities=25%  Similarity=0.305  Sum_probs=170.0

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEe
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS   98 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~   98 (239)
                      +|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++.         ..++|++
T Consensus         2 ~L~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~   80 (353)
T PRK10851          2 SIEIANIKKSFG-RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVF   80 (353)
T ss_pred             EEEEEEEEEEeC-CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEe
Confidence            589999999995 457999999999999999999999999999999999999999999998763         3599999


Q ss_pred             eccCCCCCCCCcHHHHHHHhC------CCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376           99 QHHVDGLDLSSNPLLYMMRCF------PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI  168 (239)
Q Consensus        99 q~~~~~~~~~~~~~~~~~~~~------~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~l  168 (239)
                      |++..  ....+..+++....      ...    ..+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++
T Consensus        81 Q~~~l--~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGq~QRvalArAL~~~P~l  157 (353)
T PRK10851         81 QHYAL--FRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAH-LADRYPAQLSGGQKQRVALARALAVEPQI  157 (353)
T ss_pred             cCccc--CCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            98642  22334444443211      011    1346788999999974 56789999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          169 ILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       169 lllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |||||||++||+.++..+.+.|++.    +.|+|+||||++++..+||++++|++|+++ ..|+++++.+
T Consensus       158 lLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~-~~g~~~~i~~  226 (353)
T PRK10851        158 LLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIE-QAGTPDQVWR  226 (353)
T ss_pred             EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence            9999999999999998887776542    569999999999999999999999999997 5788887643

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=100.00  E-value=3.4e-49  Score=329.53  Aligned_cols=196  Identities=28%  Similarity=0.374  Sum_probs=161.5

Q ss_pred             EEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------eEEEEEee
Q 026376           29 ISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------VRIAVFSQ   99 (239)
Q Consensus        29 l~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------~~~~~~~q   99 (239)
                      |+++|+++.|++.   +.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.      ..++|++|
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q   80 (220)
T cd03293           1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ   80 (220)
T ss_pred             CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence            4689999999542   56999999999999999999999999999999999999999999998763      35899999


Q ss_pred             ccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 026376          100 HHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE  173 (239)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDE  173 (239)
                      ++..  ....+...++..  .....    ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||
T Consensus        81 ~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDE  157 (220)
T cd03293          81 QDAL--LPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSG-FENAYPHQLSGGMRQRVALARALAVDPDVLLLDE  157 (220)
T ss_pred             cccc--ccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence            8642  122233333321  11111    2346788999999964 4577889999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEe--CCeEEeeCCC
Q 026376          174 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVS--EGKATPFHGT  228 (239)
Q Consensus       174 Pt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~--~G~i~~~~g~  228 (239)
                      ||++||+.++..+.+.+++.    +.|||++|||++++..+||++++|+  +|+++ ..++
T Consensus       158 Pt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~-~~~~  217 (220)
T cd03293         158 PFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIV-AEVE  217 (220)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEE-EEEE
Confidence            99999999999988877643    5699999999999999999999999  79986 3444

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=100.00  E-value=4.9e-49  Score=331.19  Aligned_cols=202  Identities=24%  Similarity=0.347  Sum_probs=167.1

Q ss_pred             eEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------
Q 026376           28 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------   91 (239)
Q Consensus        28 ~l~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------   91 (239)
                      ||+++|++++|++.   ..+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.             
T Consensus         1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (233)
T cd03258           1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA   80 (233)
T ss_pred             CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence            47899999999643   17999999999999999999999999999999999999999999987653             


Q ss_pred             -eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 026376           92 -VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK  164 (239)
Q Consensus        92 -~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~  164 (239)
                       ..++|++|++...  ...+..+++..  .....    ....+.++++.+++.+ ..++++.+||||||||++|||||+.
T Consensus        81 ~~~i~~~~q~~~~~--~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~  157 (233)
T cd03258          81 RRRIGMIFQHFNLL--SSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLED-KADAYPAQLSGGQKQRVGIARALAN  157 (233)
T ss_pred             HhheEEEccCcccC--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-hhhcChhhCCHHHHHHHHHHHHHhc
Confidence             2489999986422  22334433321  11111    1345778999999974 5678899999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      +|++|||||||++||+.++..+.+.+.+.    +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus       158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  229 (233)
T cd03258         158 NPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVV-EEGTVEEVF  229 (233)
T ss_pred             CCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecCHHHHh
Confidence            99999999999999999999888877643    569999999999999999999999999997 678877764

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=100.00  E-value=4.8e-49  Score=362.82  Aligned_cols=214  Identities=44%  Similarity=0.750  Sum_probs=194.0

Q ss_pred             CCCCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccC
Q 026376           23 RPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHV  102 (239)
Q Consensus        23 ~~~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~  102 (239)
                      ..++.+++++|+++.|++++.+++++||.|.+|+++||+||||+|||||||+|+|...|.+|+|.+....++||+.|+..
T Consensus       316 ~~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~  395 (530)
T COG0488         316 RLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRD  395 (530)
T ss_pred             cCCCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhh
Confidence            35678999999999996656899999999999999999999999999999999999999999999988899999999874


Q ss_pred             CCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH
Q 026376          103 DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA  182 (239)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~  182 (239)
                      .. ....++++++....+...+..++.+|..|+++.+...+++..||||||.||+||+.++.+|.+|||||||||||.++
T Consensus       396 ~l-~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s  474 (530)
T COG0488         396 EL-DPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIES  474 (530)
T ss_pred             hc-CccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHH
Confidence            32 24456777776655444478899999999999888889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHHhhc
Q 026376          183 VEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQS  238 (239)
Q Consensus       183 ~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~  238 (239)
                      +..+.+.|.++.+|||+||||.+|+.++|+++|.+++ ++..+.|+|++|.+....
T Consensus       475 ~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~~~~  529 (530)
T COG0488         475 LEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQKKE  529 (530)
T ss_pred             HHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHhhcc
Confidence            9999999999999999999999999999999999998 888888999999887643

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=100.00  E-value=2.9e-49  Score=329.36  Aligned_cols=190  Identities=29%  Similarity=0.403  Sum_probs=156.8

Q ss_pred             EEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------------
Q 026376           29 ISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------   91 (239)
Q Consensus        29 l~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------   91 (239)
                      |+++|++++|++.   +.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.              
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~   80 (218)
T cd03255           1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR   80 (218)
T ss_pred             CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence            4789999999642   56999999999999999999999999999999999999999999987652              


Q ss_pred             -eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 026376           92 -VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK  164 (239)
Q Consensus        92 -~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~  164 (239)
                       ..++|++|++...  ...+..+++..  .....    ..+++.++++.+++.. ..++++.+||||||||++|||||+.
T Consensus        81 ~~~i~~~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~  157 (218)
T cd03255          81 RRHIGFVFQSFNLL--PDLTALENVELPLLLAGVPKKERRERAEELLERVGLGD-RLNHYPSELSGGQQQRVAIARALAN  157 (218)
T ss_pred             hhcEEEEeeccccC--CCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCch-hhhcChhhcCHHHHHHHHHHHHHcc
Confidence             2589999986422  22233333321  11111    2346788999999974 4578889999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeE
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKA  222 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i  222 (239)
                      +|++|||||||++||+.++..+.+.+++.    +.|||+||||++++. +||++++|++|++
T Consensus       158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i  218 (218)
T cd03255         158 DPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI  218 (218)
T ss_pred             CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence            99999999999999999999888877643    569999999999997 9999999999974

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=100.00  E-value=3.2e-49  Score=328.20  Aligned_cols=191  Identities=28%  Similarity=0.427  Sum_probs=158.8

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------------eE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------VR   93 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~~   93 (239)
                      ||+++|++++|+++..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.              ..
T Consensus         1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   80 (214)
T TIGR02673         1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR   80 (214)
T ss_pred             CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence            4789999999953457999999999999999999999999999999999999999999987652              24


Q ss_pred             EEEEeeccCCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 026376           94 IAVFSQHHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH  167 (239)
Q Consensus        94 ~~~~~q~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~  167 (239)
                      ++|++|++...  ...+...++..  ....    ...+++.++++.+++.+ ..++++.+||||||||++|||||+.+|+
T Consensus        81 i~~~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~  157 (214)
T TIGR02673        81 IGVVFQDFRLL--PDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEH-KADAFPEQLSGGEQQRVAIARAIVNSPP  157 (214)
T ss_pred             eEEEecChhhc--cCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHhCCCC
Confidence            89999986422  22233333321  1111    12346788999999974 4577889999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCe
Q 026376          168 IILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGK  221 (239)
Q Consensus       168 llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~  221 (239)
                      +|||||||++||+.++..+.+.+++   .+.|||++|||++++..+||++++|++|+
T Consensus       158 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~  214 (214)
T TIGR02673       158 LLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR  214 (214)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence            9999999999999999998887765   36799999999999999999999999885

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=100.00  E-value=3.7e-49  Score=330.72  Aligned_cols=197  Identities=22%  Similarity=0.336  Sum_probs=162.5

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCc-----CCCceeEEecCc------------
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL-----QPSSGTVFRSAK------------   91 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~-----~p~~G~i~~~~~------------   91 (239)
                      |+++|++++|+ ++.+|+|+||+|.+||+++|+||||||||||+++|+|++     +|++|+|.+++.            
T Consensus         1 i~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~   79 (227)
T cd03260           1 IELRDLNVYYG-DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL   79 (227)
T ss_pred             CEEEEEEEEcC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence            47899999995 457999999999999999999999999999999999999     999999988663            


Q ss_pred             -eEEEEEeeccCCCCCCCCcHHHHHHH--hCCC--C---cHHHHHHHHHhcCCCcccccCC--CCCCChHHHHHHHHHHH
Q 026376           92 -VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG--V---PEQKLRAHLGSFGVTGNLALQP--MYTLSGGQKSRVAFAKI  161 (239)
Q Consensus        92 -~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~--~---~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGqkqrv~lara  161 (239)
                       ..++|++|++...   ..+..+++..  ....  .   ..+++.++++.+++.+. .+++  +.+||||||||++||||
T Consensus        80 ~~~i~~~~q~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~LSgG~~qrv~la~a  155 (227)
T cd03260          80 RRRVGMVFQKPNPF---PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDE-VKDRLHALGLSGGQQQRLCLARA  155 (227)
T ss_pred             HhhEEEEecCchhc---cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChH-HhccCCcccCCHHHHHHHHHHHH
Confidence             2489999986422   2344444321  1111  1   23467789999999753 3444  59999999999999999


Q ss_pred             hccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhH
Q 026376          162 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQ--GGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD  231 (239)
Q Consensus       162 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~  231 (239)
                      |+.+|++|||||||++||+.++..+.+.|++..  .|||++|||++++..+||++++|++|+++ +.|++++
T Consensus       156 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~  226 (227)
T cd03260         156 LANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLV-EFGPTEQ  226 (227)
T ss_pred             HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEE-EecCccc
Confidence            999999999999999999999999988887642  58999999999999999999999999997 5677654

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=100.00  E-value=4.1e-49  Score=338.36  Aligned_cols=207  Identities=22%  Similarity=0.315  Sum_probs=167.9

Q ss_pred             CeEEEEeeEEEcCC--------CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------
Q 026376           27 PIISFSDASFGYPG--------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------   91 (239)
Q Consensus        27 ~~l~~~~l~~~y~~--------~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------   91 (239)
                      ++|+++||+++|++        ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.       
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~   82 (267)
T PRK15112          3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY   82 (267)
T ss_pred             ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence            47999999999952        246999999999999999999999999999999999999999999988752       


Q ss_pred             ----eEEEEEeeccCCCCCCCCcHHHHHH---HhCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 026376           92 ----VRIAVFSQHHVDGLDLSSNPLLYMM---RCFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK  160 (239)
Q Consensus        92 ----~~~~~~~q~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lar  160 (239)
                          ..++|++|++...+....+....+.   .....    ...+++.++++.+++.....++++.+|||||||||+|||
T Consensus        83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lar  162 (267)
T PRK15112         83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLAR  162 (267)
T ss_pred             hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHH
Confidence                2489999986322222222222221   11111    113457789999999544556788999999999999999


Q ss_pred             HhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          161 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       161 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      ||+.+|++|||||||++||+.++..+.+.|.+.    +.|||++||+++++..+||++++|++|+++ ..|+++++.+
T Consensus       163 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~  239 (267)
T PRK15112        163 ALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVV-ERGSTADVLA  239 (267)
T ss_pred             HHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE-ecCCHHHHhc
Confidence            999999999999999999999999888877653    569999999999999999999999999997 6788777643

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=100.00  E-value=5.6e-49  Score=337.12  Aligned_cols=205  Identities=21%  Similarity=0.326  Sum_probs=167.8

Q ss_pred             eEEEEeeEEEcCC--------CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------
Q 026376           28 IISFSDASFGYPG--------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------   91 (239)
Q Consensus        28 ~l~~~~l~~~y~~--------~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------   91 (239)
                      +|+++||++.|++        ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.        
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~   81 (265)
T TIGR02769         2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK   81 (265)
T ss_pred             eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence            6899999999952        356999999999999999999999999999999999999999999988752        


Q ss_pred             ------eEEEEEeeccCCCCCCCCcHHHHHH---HhCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHH
Q 026376           92 ------VRIAVFSQHHVDGLDLSSNPLLYMM---RCFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF  158 (239)
Q Consensus        92 ------~~~~~~~q~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~l  158 (239)
                            ..++|++|++...+....+..+++.   .....    ...+++.++++.+++.....++++.+||||||||++|
T Consensus        82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l  161 (265)
T TIGR02769        82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI  161 (265)
T ss_pred             HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence                  2489999986322222233333321   11111    1235678899999996445678899999999999999


Q ss_pred             HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          159 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       159 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      ||||+.+|++|||||||++||+.++..+.+.|.++    +.|||+||||++++..+||++++|++|+++ ..|+++++.
T Consensus       162 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  239 (265)
T TIGR02769       162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIV-EECDVAQLL  239 (265)
T ss_pred             HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEE-EECCHHHHc
Confidence            99999999999999999999999988887777543    579999999999999999999999999997 568877664

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=4.2e-50  Score=330.52  Aligned_cols=203  Identities=28%  Similarity=0.404  Sum_probs=172.1

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEE
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI   94 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~   94 (239)
                      +++++++++++| |+..+++||||++++||+++||||||||||||+|+|+|+++|++|+|.+.++            ..+
T Consensus         3 ~lL~v~~l~k~F-GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi   81 (250)
T COG0411           3 PLLEVRGLSKRF-GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI   81 (250)
T ss_pred             ceeeeccceeec-CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence            578999999999 5678999999999999999999999999999999999999999999998874            357


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHh------------CC------CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHH
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRC------------FP------GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV  156 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~------------~~------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv  156 (239)
                      +..||....+.  ..+++++++..            .+      ....+++.++|+.+|+.+ .++++.++||+|||+|+
T Consensus        82 ~RTFQ~~rlF~--~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~-~a~~~A~~LsyG~qR~L  158 (250)
T COG0411          82 ARTFQITRLFP--GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGE-LADRPAGNLSYGQQRRL  158 (250)
T ss_pred             eeecccccccC--CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCch-hhcchhhcCChhHhHHH
Confidence            88899864322  23444433211            00      112456788999999975 67899999999999999


Q ss_pred             HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376          157 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       157 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                      .|||||+.+|++||||||.+||.+.....+.+.+++.    +.||++|.||+..+..+||||++|+.|+++ .+|+|+++
T Consensus       159 EIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~I-AeG~P~eV  237 (250)
T COG0411         159 EIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVI-AEGTPEEV  237 (250)
T ss_pred             HHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCc-ccCCHHHH
Confidence            9999999999999999999999999988887766543    369999999999999999999999999997 78999997


Q ss_pred             HH
Q 026376          233 KK  234 (239)
Q Consensus       233 ~~  234 (239)
                      .+
T Consensus       238 ~~  239 (250)
T COG0411         238 RN  239 (250)
T ss_pred             hc
Confidence            64

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=100.00  E-value=6.8e-49  Score=334.10  Aligned_cols=202  Identities=25%  Similarity=0.450  Sum_probs=168.8

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCC
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD  106 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~  106 (239)
                      ++|+++|+++.|+ +..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++...++|++|++.....
T Consensus         3 ~~l~~~~l~~~~~-~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~   81 (251)
T PRK09544          3 SLVSLENVSVSFG-QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTT   81 (251)
T ss_pred             cEEEEeceEEEEC-CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccc
Confidence            4799999999995 456999999999999999999999999999999999999999999999887789999998643222


Q ss_pred             CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH
Q 026376          107 LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL  186 (239)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l  186 (239)
                      +..+...++. .......+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||++||+.++..+
T Consensus        82 l~~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l  159 (251)
T PRK09544         82 LPLTVNRFLR-LRPGTKKEDILPALKRVQAGH-LIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVAL  159 (251)
T ss_pred             cChhHHHHHh-ccccccHHHHHHHHHHcCChH-HHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence            2223333321 122234567888999999974 55788999999999999999999999999999999999999999988


Q ss_pred             HHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          187 IQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       187 ~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      .+.|.+.    +.|||++|||++++..+||++++|++ +++ ..|+++++.
T Consensus       160 ~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~-~~g~~~~~~  208 (251)
T PRK09544        160 YDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HIC-CSGTPEVVS  208 (251)
T ss_pred             HHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceE-eeCCHHHHh
Confidence            8877542    67999999999999999999999965 675 568877653

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.3e-49  Score=340.76  Aligned_cols=204  Identities=25%  Similarity=0.350  Sum_probs=167.8

Q ss_pred             eEEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------
Q 026376           28 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------   91 (239)
Q Consensus        28 ~l~~~~l~~~y~~~----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------   91 (239)
                      .++++|++++|+++    ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.            
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   81 (286)
T PRK13646          2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR   81 (286)
T ss_pred             EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence            48999999999532    35999999999999999999999999999999999999999999988762            


Q ss_pred             ---eEEEEEeeccCCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHh
Q 026376           92 ---VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT  162 (239)
Q Consensus        92 ---~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral  162 (239)
                         ..++|++|++...+. ..+...++...  ....    ..+++.++++.+|+.....++++.+||||||||++|||||
T Consensus        82 ~~~~~ig~v~q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL  160 (286)
T PRK13646         82 PVRKRIGMVFQFPESQLF-EDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSIL  160 (286)
T ss_pred             HHHhheEEEecChHhccc-hhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence               248999998632221 12444443211  1111    2345678899999963456788999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          163 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       163 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      +.+|++|||||||++||+.++..+.+.+++.    +.|||+||||++++..+||++++|++|+++ +.|+++++.
T Consensus       161 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~-~~g~~~~~~  234 (286)
T PRK13646        161 AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIV-SQTSPKELF  234 (286)
T ss_pred             HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence            9999999999999999999999888877643    569999999999999999999999999997 678887754

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=100.00  E-value=1.7e-49  Score=329.81  Aligned_cols=191  Identities=29%  Similarity=0.418  Sum_probs=158.5

Q ss_pred             EEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------eEEEEEeeccCC
Q 026376           30 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------VRIAVFSQHHVD  103 (239)
Q Consensus        30 ~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------~~~~~~~q~~~~  103 (239)
                      +++|++++|+ +..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.      ..++|++|++..
T Consensus         1 ~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~   79 (213)
T cd03235           1 EVEDLTVSYG-GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSI   79 (213)
T ss_pred             CcccceeEEC-CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecccccc
Confidence            3689999995 456999999999999999999999999999999999999999999998873      459999998643


Q ss_pred             CCCCCCcHHHHHHHhCC----------CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 026376          104 GLDLSSNPLLYMMRCFP----------GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE  173 (239)
Q Consensus       104 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDE  173 (239)
                      ...+..+..+++.....          ....+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||
T Consensus        80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE  158 (213)
T cd03235          80 DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSE-LADRQIGELSGGQQQRVLLARALVQDPDLLLLDE  158 (213)
T ss_pred             ccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHH-HHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence            21122345444432110          012346788999999964 5678899999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeE
Q 026376          174 PSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKA  222 (239)
Q Consensus       174 Pt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i  222 (239)
                      ||++||+.++..+.+.+.+.   +.|||++|||++++.++||++++|++|.+
T Consensus       159 Pt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~~~  210 (213)
T cd03235         159 PFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV  210 (213)
T ss_pred             CcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCcEe
Confidence            99999999999888877653   46999999999999999999999988643

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=100.00  E-value=8.7e-49  Score=325.39  Aligned_cols=192  Identities=22%  Similarity=0.347  Sum_probs=159.7

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEee
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ   99 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~q   99 (239)
                      |+++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.         ..++|++|
T Consensus         1 i~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q   79 (213)
T cd03301           1 VELENVTKRFGN-VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQ   79 (213)
T ss_pred             CEEEeeEEEECC-eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEec
Confidence            478999999954 57999999999999999999999999999999999999999999988763         24899999


Q ss_pred             ccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 026376          100 HHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE  173 (239)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDE  173 (239)
                      ++...  ...+..+++..  .....    ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|+++||||
T Consensus        80 ~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr~~laral~~~p~llllDE  156 (213)
T cd03301          80 NYALY--PHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEH-LLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDE  156 (213)
T ss_pred             Chhhc--cCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHH-HHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            86422  22334333321  11111    1345678899999964 5678899999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEe
Q 026376          174 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATP  224 (239)
Q Consensus       174 Pt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~  224 (239)
                      ||+|||+.++..+.+.+.+.    +.|||++|||++++..+||++++|++|+++.
T Consensus       157 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~  211 (213)
T cd03301         157 PLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQ  211 (213)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence            99999999999988877643    5799999999999999999999999999873

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=100.00  E-value=1e-48  Score=333.10  Aligned_cols=205  Identities=22%  Similarity=0.319  Sum_probs=167.2

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce--------------
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--------------   92 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~--------------   92 (239)
                      ++|+++|+++.|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++..              
T Consensus         2 ~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   80 (253)
T TIGR02323         2 PLLQVSGLSKSYG-GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER   80 (253)
T ss_pred             ceEEEeeeEEEeC-CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence            4799999999995 4568999999999999999999999999999999999999999999886421              


Q ss_pred             ------EEEEEeeccCCCCCCCCcHHHHHH----HhC-C--CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHH
Q 026376           93 ------RIAVFSQHHVDGLDLSSNPLLYMM----RCF-P--GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFA  159 (239)
Q Consensus        93 ------~~~~~~q~~~~~~~~~~~~~~~~~----~~~-~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la  159 (239)
                            .++|++|++...+....+...++.    ... .  ......+.++++.+++.....++++.+|||||||||+||
T Consensus        81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~la  160 (253)
T TIGR02323        81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIA  160 (253)
T ss_pred             HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHH
Confidence                  389999986322222222222221    111 0  112356788999999964356788999999999999999


Q ss_pred             HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          160 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       160 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      |||+.+|++|||||||+|||+.++..+.+.+.+    .+.|||+||||++++..+||++++|++|+++ ..|+++++.
T Consensus       161 ral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~-~~~~~~~~~  237 (253)
T TIGR02323       161 RNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVV-ESGLTDQVL  237 (253)
T ss_pred             HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EECCHHHHh
Confidence            999999999999999999999999988877754    2579999999999999999999999999997 567777664

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=100.00  E-value=6.7e-49  Score=327.17  Aligned_cols=193  Identities=22%  Similarity=0.304  Sum_probs=161.1

Q ss_pred             eEEEEeeEEEcCCCC---ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEE
Q 026376           28 IISFSDASFGYPGGP---ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRI   94 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~---~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~   94 (239)
                      +|+++|++++|++..   .+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++.          ..+
T Consensus         1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i   80 (218)
T cd03266           1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL   80 (218)
T ss_pred             CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhE
Confidence            478999999996431   6999999999999999999999999999999999999999999998763          258


Q ss_pred             EEEeeccCCCCCCCCcHHHHHH--HhCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMM--RCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI  168 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~l  168 (239)
                      +|++|++...  ...+..+++.  ......    ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++
T Consensus        81 ~~~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~i  157 (218)
T cd03266          81 GFVSDSTGLY--DRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEE-LLDRRVGGFSTGMRQKVAIARALVHDPPV  157 (218)
T ss_pred             EEecCCcccC--cCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HHhhhhhhcCHHHHHHHHHHHHHhcCCCE
Confidence            9999986322  2223433332  111111    2346788999999964 56788999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376          169 ILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       169 lllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~  223 (239)
                      |||||||++||+.++..+.+.+.+.   +.|||+||||++++..+||++++|++|++.
T Consensus       158 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~  215 (218)
T cd03266         158 LLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVV  215 (218)
T ss_pred             EEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEe
Confidence            9999999999999999888877653   569999999999999999999999999986

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-48  Score=364.10  Aligned_cols=210  Identities=30%  Similarity=0.574  Sum_probs=180.4

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCC
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL  105 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~  105 (239)
                      +++|+++|++++|+ ++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++++..++|++|++...+
T Consensus       317 ~~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~  395 (530)
T PRK15064        317 RNALEVENLTKGFD-NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDF  395 (530)
T ss_pred             CceEEEEeeEEeeC-CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccC
Confidence            45899999999995 45699999999999999999999999999999999999999999999998888999999863222


Q ss_pred             CCCCcHHHHHHHhC-CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHH
Q 026376          106 DLSSNPLLYMMRCF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE  184 (239)
Q Consensus       106 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~  184 (239)
                      ....+...++.... .....+++.++++.+++.....++++.+||||||||++|||||+.+|++|||||||+|||+.++.
T Consensus       396 ~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~  475 (530)
T PRK15064        396 ENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIE  475 (530)
T ss_pred             CCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence            22234444432211 12235568889999999534567899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHHh
Q 026376          185 ALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKML  236 (239)
Q Consensus       185 ~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~  236 (239)
                      .+.+.+.++++|||+||||++++..+||++++|++|+++.+.|+++++.+..
T Consensus       476 ~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~~  527 (530)
T PRK15064        476 SLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRSQ  527 (530)
T ss_pred             HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHHh
Confidence            9999999888899999999999999999999999999976789999987654

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=100.00  E-value=6.8e-49  Score=330.04  Aligned_cols=200  Identities=24%  Similarity=0.371  Sum_probs=165.0

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEEEE
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIAV   96 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~~~   96 (239)
                      ++++|++++|+ ++.+|+++||++.+|++++|+||||||||||+++|+|+++|++|+|.+++.            ..++|
T Consensus         1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~   79 (232)
T cd03218           1 LRAENLSKRYG-KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY   79 (232)
T ss_pred             CeEEEEEEEeC-CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence            47899999995 456999999999999999999999999999999999999999999988653            24899


Q ss_pred             EeeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 026376           97 FSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL  170 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~lll  170 (239)
                      ++|++...  ...+..+++..  .....    ...++.++++.+++.+ ..++++.+||||||||++|||||+.+|++||
T Consensus        80 ~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~lll  156 (232)
T cd03218          80 LPQEASIF--RKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITH-LRKSKASSLSGGERRRVEIARALATNPKFLL  156 (232)
T ss_pred             ecCCcccc--ccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            99986322  22233333321  11111    1245678899999974 5678899999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          171 LDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       171 lDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      |||||++||+.++..+.+.+++   .+.|||++|||++++..+||++++|++|++. ..|+.+++.
T Consensus       157 lDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  221 (232)
T cd03218         157 LDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVL-AEGTPEEIA  221 (232)
T ss_pred             ecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-EEeCHHHhh
Confidence            9999999999999988877654   3569999999999999999999999999997 678877764

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=100.00  E-value=8.4e-49  Score=334.56  Aligned_cols=203  Identities=22%  Similarity=0.307  Sum_probs=168.7

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------------
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------   91 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------   91 (239)
                      .+|+++|+++.|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++.               
T Consensus         4 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   82 (257)
T PRK10619          4 NKLNVIDLHKRYG-EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVA   82 (257)
T ss_pred             ccEEEeeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccc
Confidence            4689999999995 457999999999999999999999999999999999999999999987652               


Q ss_pred             ---------eEEEEEeeccCCCCCCCCcHHHHHHH---hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHH
Q 026376           92 ---------VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR  155 (239)
Q Consensus        92 ---------~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr  155 (239)
                               ..++|++|++...  ...+..+++..   ....    ....++.++++.+++.....++++.+||||||||
T Consensus        83 ~~~~~~~~~~~i~~v~q~~~l~--~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qr  160 (257)
T PRK10619         83 DKNQLRLLRTRLTMVFQHFNLW--SHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQR  160 (257)
T ss_pred             cchHHHHHhhceEEEecCcccC--CCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHH
Confidence                     2489999986422  22344444321   1111    1234678899999997543467889999999999


Q ss_pred             HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376          156 VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       156 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                      ++|||||+.+|++|||||||++||+.++..+.+.|++.   +.|||+||||++++..+||++++|++|+++ +.|+++++
T Consensus       161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~  239 (257)
T PRK10619        161 VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE-EEGAPEQL  239 (257)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHh
Confidence            99999999999999999999999999999888876543   679999999999999999999999999997 67888776


Q ss_pred             H
Q 026376          233 K  233 (239)
Q Consensus       233 ~  233 (239)
                      .
T Consensus       240 ~  240 (257)
T PRK10619        240 F  240 (257)
T ss_pred             h
Confidence            4

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.9e-49  Score=345.83  Aligned_cols=206  Identities=18%  Similarity=0.252  Sum_probs=167.9

Q ss_pred             CeEEEEeeEEEcCC---CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC----CCceeEEecCc--------
Q 026376           27 PIISFSDASFGYPG---GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ----PSSGTVFRSAK--------   91 (239)
Q Consensus        27 ~~l~~~~l~~~y~~---~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~----p~~G~i~~~~~--------   91 (239)
                      ++|+++||+++|+.   ...+|+||||+|.+||+++|+|+||||||||+++|+|+++    |++|+|.+++.        
T Consensus         2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~   81 (330)
T PRK15093          2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR   81 (330)
T ss_pred             CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence            37999999999942   2468999999999999999999999999999999999997    58999998763        


Q ss_pred             -------eEEEEEeeccCCCCCCCCcHHHHHHH---h--CC-----C--CcHHHHHHHHHhcCCCc--ccccCCCCCCCh
Q 026376           92 -------VRIAVFSQHHVDGLDLSSNPLLYMMR---C--FP-----G--VPEQKLRAHLGSFGVTG--NLALQPMYTLSG  150 (239)
Q Consensus        92 -------~~~~~~~q~~~~~~~~~~~~~~~~~~---~--~~-----~--~~~~~~~~~l~~~~l~~--~~~~~~~~~LSg  150 (239)
                             ..++|++|++...++...+....+..   .  ..     .  ...+++.++|+.+++.+  ...++++.+|||
T Consensus        82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg  161 (330)
T PRK15093         82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE  161 (330)
T ss_pred             HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence                   14999999975333333333332221   0  10     0  11346788999999964  234678899999


Q ss_pred             HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeC
Q 026376          151 GQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFH  226 (239)
Q Consensus       151 Gqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~  226 (239)
                      ||||||+|||||+.+|++|||||||++||+.++.++++.|++    .+.|||+||||++++.++||++++|++|+++ ..
T Consensus       162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~iv-e~  240 (330)
T PRK15093        162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTV-ET  240 (330)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EE
Confidence            999999999999999999999999999999999988887764    3569999999999999999999999999997 56


Q ss_pred             CChhHHH
Q 026376          227 GTFHDYK  233 (239)
Q Consensus       227 g~~~~~~  233 (239)
                      |+.+++.
T Consensus       241 g~~~~i~  247 (330)
T PRK15093        241 APSKELV  247 (330)
T ss_pred             CCHHHHH
Confidence            7776653

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=100.00  E-value=1.3e-48  Score=329.33  Aligned_cols=201  Identities=23%  Similarity=0.387  Sum_probs=166.1

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVF   97 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~~~   97 (239)
                      +|+++|++++|+ ++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.          ..++|+
T Consensus         1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~   79 (236)
T TIGR03864         1 ALEVAGLSFAYG-ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVV   79 (236)
T ss_pred             CEEEEeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEe
Confidence            478999999995 457999999999999999999999999999999999999999999988763          248999


Q ss_pred             eeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 026376           98 SQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL  171 (239)
Q Consensus        98 ~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llll  171 (239)
                      +|++...  ...+...++..  .....    ..+.+.++++.+++.. ..++++.+||||||||++|||||+.+|++|||
T Consensus        80 ~q~~~~~--~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrl~laral~~~p~llll  156 (236)
T TIGR03864        80 FQQPTLD--LDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAE-RADDKVRELNGGHRRRVEIARALLHRPALLLL  156 (236)
T ss_pred             CCCCCCc--ccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            9986422  22334433321  11111    2345678899999974 46788999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          172 DEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       172 DEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      ||||++||+.++..+.+.+.+.    +.|||++|||++++.. ||++++|++|+++ ..|+++++.+
T Consensus       157 DEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~-~~~~~~~~~~  221 (236)
T TIGR03864       157 DEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVL-ADGAAAELRG  221 (236)
T ss_pred             cCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEE-EeCCHHHHHH
Confidence            9999999999999988877643    5699999999999975 9999999999997 5788776654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.6e-48  Score=348.61  Aligned_cols=204  Identities=23%  Similarity=0.321  Sum_probs=171.1

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEE
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAV   96 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~   96 (239)
                      .++|+++|++++|+ +..+|+++||+|++||+++|+||||||||||||+|+|+.+|++|+|.+++.         ..++|
T Consensus        17 ~~~l~l~~v~~~~~-~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~   95 (377)
T PRK11607         17 TPLLEIRNLTKSFD-GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINM   95 (377)
T ss_pred             CceEEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence            45799999999995 457899999999999999999999999999999999999999999998774         25999


Q ss_pred             EeeccCCCCCCCCcHHHHHHHhC--CCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 026376           97 FSQHHVDGLDLSSNPLLYMMRCF--PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL  170 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~lll  170 (239)
                      +||++..  ....+..+++....  ...    ..+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||
T Consensus        96 vfQ~~~l--fp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~~~LSgGq~QRVaLARAL~~~P~lLL  172 (377)
T PRK11607         96 MFQSYAL--FPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQE-FAKRKPHQLSGGQRQRVALARSLAKRPKLLL  172 (377)
T ss_pred             EeCCCcc--CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            9998743  22334555443211  111    1346788999999974 5678999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          171 LDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       171 lDEPt~~LD~~~~~~l~~~l~----~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |||||++||...+..+.+.++    +.+.|+|+||||.+++..+||++++|++|+++ ..|+++++..
T Consensus       173 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~-~~g~~~~~~~  239 (377)
T PRK11607        173 LDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFV-QIGEPEEIYE  239 (377)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEE-EEcCHHHHHh
Confidence            999999999999887765443    34679999999999999999999999999997 5688887654

>PRK10908 cell division protein FtsE; Provisional

Probab=100.00  E-value=1.1e-48  Score=326.86  Aligned_cols=193  Identities=29%  Similarity=0.429  Sum_probs=160.3

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------------eE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------VR   93 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~~   93 (239)
                      ||+++|+++.|+++..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.              ..
T Consensus         1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~   80 (222)
T PRK10908          1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ   80 (222)
T ss_pred             CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence            4789999999943457999999999999999999999999999999999999999999987653              24


Q ss_pred             EEEEeeccCCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 026376           94 IAVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH  167 (239)
Q Consensus        94 ~~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~  167 (239)
                      ++|++|++..  ....+..+++...  .....    .+++.++++.+++.+ ..++++.+||||||||++|||||+.+|+
T Consensus        81 i~~~~q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~  157 (222)
T PRK10908         81 IGMIFQDHHL--LMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLD-KAKNFPIQLSGGEQQRVGIARAVVNKPA  157 (222)
T ss_pred             eEEEecCccc--cccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChh-hhhCCchhCCHHHHHHHHHHHHHHcCCC
Confidence            8999998642  2223444433211  11111    235678899999974 4578889999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376          168 IILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       168 llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~  223 (239)
                      +|||||||++||+.++..+.+.+.+.   +.|||++|||++++..+||++++|++|+++
T Consensus       158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~  216 (222)
T PRK10908        158 VLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH  216 (222)
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence            99999999999999998887777643   569999999999999999999999999985

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=100.00  E-value=1.1e-48  Score=331.04  Aligned_cols=202  Identities=24%  Similarity=0.319  Sum_probs=166.3

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEEE
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVF   97 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~~   97 (239)
                      ++++|++++|++...+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.           ..++|+
T Consensus         1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~   80 (242)
T cd03295           1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV   80 (242)
T ss_pred             CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence            468999999964256899999999999999999999999999999999999999999988763           258999


Q ss_pred             eeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCc-ccccCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 026376           98 SQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTG-NLALQPMYTLSGGQKSRVAFAKITFKKPHIIL  170 (239)
Q Consensus        98 ~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkqrv~laral~~~p~lll  170 (239)
                      +|++...  ...+..+++..  .....    ..+++.++++.+++.. ...++++.+||||||||++|||||+.+|++||
T Consensus        81 ~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll  158 (242)
T cd03295          81 IQQIGLF--PHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLL  158 (242)
T ss_pred             ccCcccc--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            9986322  22344443321  11111    1345778999999974 25678899999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          171 LDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       171 lDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      |||||++||+.++..+.+.|.+.    +.|||++|||.+++..+||++++|++|+++ ..|+++++.
T Consensus       159 lDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  224 (242)
T cd03295         159 MDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIV-QVGTPDEIL  224 (242)
T ss_pred             ecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EecCHHHHH
Confidence            99999999999999888877653    569999999999999999999999999997 567877664

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8e-49  Score=337.20  Aligned_cols=202  Identities=28%  Similarity=0.382  Sum_probs=165.6

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------eEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VRI   94 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~~   94 (239)
                      ||+++|++++|+ ++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.             ..+
T Consensus         1 ml~~~~l~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i   79 (271)
T PRK13638          1 MLATSDLWFRYQ-DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV   79 (271)
T ss_pred             CeEEEEEEEEcC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence            589999999995 456999999999999999999999999999999999999999999987653             248


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI  168 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~l  168 (239)
                      +|++|++...+. ..+...++..  ......    .+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++
T Consensus        80 ~~v~q~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrl~laraL~~~p~l  157 (271)
T PRK13638         80 ATVFQDPEQQIF-YTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQH-FRHQPIQCLSHGQKKRVAIAGALVLQARY  157 (271)
T ss_pred             EEEeeChhhccc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHh-HhcCCchhCCHHHHHHHHHHHHHHcCCCE
Confidence            999998632111 1122222211  111111    234677899999964 46788999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          169 ILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       169 lllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      |||||||++||+.++..+.+.|.+.   +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus       158 llLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  224 (271)
T PRK13638        158 LLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQIL-THGAPGEVF  224 (271)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence            9999999999999999888877653   569999999999999999999999999997 678887764

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=100.00  E-value=6.3e-49  Score=342.72  Aligned_cols=195  Identities=23%  Similarity=0.321  Sum_probs=162.0

Q ss_pred             EEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEEEEeeccCCCC
Q 026376           36 FGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVFSQHHVDGL  105 (239)
Q Consensus        36 ~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~~~~q~~~~~~  105 (239)
                      ++|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.          ..++|++|++... 
T Consensus         1 k~y~-~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~-   78 (302)
T TIGR01188         1 KVYG-DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVD-   78 (302)
T ss_pred             CeeC-CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCC-
Confidence            3573 457999999999999999999999999999999999999999999998763          2589999986422 


Q ss_pred             CCCCcHHHHHH--HhCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 026376          106 DLSSNPLLYMM--RCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD  179 (239)
Q Consensus       106 ~~~~~~~~~~~--~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD  179 (239)
                       ...+..+++.  ......    ..+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus        79 -~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD  156 (302)
T TIGR01188        79 -EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGE-AADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLD  156 (302)
T ss_pred             -CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-HhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence             2233333332  111111    1345788999999974 5678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376          180 LDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  235 (239)
Q Consensus       180 ~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  235 (239)
                      +.++..+.+.+++.   +.|||++||+++++.++||++++|++|+++ +.|+++++.+.
T Consensus       157 ~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~l~~~  214 (302)
T TIGR01188       157 PRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRII-AEGTPEELKRR  214 (302)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHHh
Confidence            99999888877653   569999999999999999999999999997 67998887654

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=1.1e-48  Score=330.65  Aligned_cols=201  Identities=24%  Similarity=0.340  Sum_probs=166.9

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------eEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VRI   94 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~~   94 (239)
                      +|+++|++++|+ ++.+|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|++++.             ..+
T Consensus         1 ~l~~~~l~~~~~-~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i   79 (240)
T PRK09493          1 MIEFKNVSKHFG-PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA   79 (240)
T ss_pred             CEEEEeEEEEEC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence            478999999995 457999999999999999999999999999999999999999999988752             248


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHH---hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMR---CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH  167 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~  167 (239)
                      +|++|++...  ...+...++..   .....    ..+++.++++.+++.. ..++++.+||||||||++|||||+.+|+
T Consensus        80 ~~~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~la~al~~~p~  156 (240)
T PRK09493         80 GMVFQQFYLF--PHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAE-RAHHYPSELSGGQQQRVAIARALAVKPK  156 (240)
T ss_pred             EEEecccccC--CCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChH-HHhcChhhcCHHHHHHHHHHHHHhcCCC
Confidence            9999986322  22333333321   11111    2345678999999964 4578889999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          168 IILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       168 llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      +|||||||++||+.++..+.+.+.+.   +.|||++|||++++..+||++++|++|+++ +.|+++++.
T Consensus       157 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  224 (240)
T PRK09493        157 LMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIA-EDGDPQVLI  224 (240)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-eeCCHHHHh
Confidence            99999999999999999888877543   579999999999999999999999999997 678887764

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=100.00  E-value=1.2e-48  Score=332.01  Aligned_cols=201  Identities=22%  Similarity=0.347  Sum_probs=166.5

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------------
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------------   91 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------------   91 (239)
                      +|+++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.                
T Consensus         3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   81 (250)
T PRK11264          3 AIEVKNLVKKFH-GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR   81 (250)
T ss_pred             cEEEeceEEEEC-CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence            699999999995 456999999999999999999999999999999999999999999987542                


Q ss_pred             ---eEEEEEeeccCCCCCCCCcHHHHHHH---hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 026376           92 ---VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI  161 (239)
Q Consensus        92 ---~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lara  161 (239)
                         ..++|++|++...  ...+..+++..   .....    ..+++.++++.+++.. ..++++.+||||||||++||||
T Consensus        82 ~~~~~i~~v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~Gq~qrv~la~a  158 (250)
T PRK11264         82 QLRQHVGFVFQNFNLF--PHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAG-KETSYPRRLSGGQQQRVAIARA  158 (250)
T ss_pred             HhhhhEEEEecCcccC--CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcc-hhhCChhhCChHHHHHHHHHHH
Confidence               2489999986322  22334333321   11111    1345678899999974 4578899999999999999999


Q ss_pred             hccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          162 TFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       162 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      |+.+|++|||||||++||+.++..+.+.+.+   .+.|||++|||.+++..+||++++|++|+++ +.|+++++.
T Consensus       159 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  232 (250)
T PRK11264        159 LAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIV-EQGPAKALF  232 (250)
T ss_pred             HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence            9999999999999999999999988877654   3679999999999999999999999999997 678887764

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=100.00  E-value=6.5e-49  Score=327.98  Aligned_cols=200  Identities=23%  Similarity=0.341  Sum_probs=163.7

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEEEE
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIAV   96 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~~~   96 (239)
                      |+++|++++|+ +..+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.            ..++|
T Consensus         1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~   79 (222)
T cd03224           1 LEVENLNAGYG-KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY   79 (222)
T ss_pred             CEEeeEEeecC-CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence            47899999995 457999999999999999999999999999999999999999999988752            24899


Q ss_pred             EeeccCCCCCCCCcHHHHHHH---hCC-CCcHHHHHHHHHhc-CCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 026376           97 FSQHHVDGLDLSSNPLLYMMR---CFP-GVPEQKLRAHLGSF-GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL  171 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~l~~~-~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llll  171 (239)
                      ++|++..  ....+...++..   ... .....++.++++.+ ++. ...++++.+||||||||++|||||+.+|++|||
T Consensus        80 ~~q~~~~--~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llll  156 (222)
T cd03224          80 VPEGRRI--FPELTVEENLLLGAYARRRAKRKARLERVYELFPRLK-ERRKQLAGTLSGGEQQMLAIARALMSRPKLLLL  156 (222)
T ss_pred             ecccccc--CCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhh-hhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            9998632  222344443321   111 11233456778877 464 345788999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          172 DEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       172 DEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      ||||++||+.++..+.+.+++.   +.|||++|||++++..+||++++|++|++. ..|+++++.
T Consensus       157 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  220 (222)
T cd03224         157 DEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVV-LEGTAAELL  220 (222)
T ss_pred             CCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEE-EeCCHHHHh
Confidence            9999999999999988887653   569999999999999999999999999997 578877654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-48  Score=337.21  Aligned_cols=205  Identities=27%  Similarity=0.425  Sum_probs=170.0

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------eE
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VR   93 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~   93 (239)
                      ++|+++|++++|++++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.             ..
T Consensus         4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~   83 (283)
T PRK13636          4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES   83 (283)
T ss_pred             ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence            47999999999964456999999999999999999999999999999999999999999988763             24


Q ss_pred             EEEEeeccCCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 026376           94 IAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH  167 (239)
Q Consensus        94 ~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~  167 (239)
                      ++|++|++...+ +..+..+++..  ......    .+++.++++.+++.+ ..++++.+||||||||++|||||+.+|+
T Consensus        84 ig~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LS~G~~qrl~laraL~~~p~  161 (283)
T PRK13636         84 VGMVFQDPDNQL-FSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEH-LKDKPTHCLSFGQKKRVAIAGVLVMEPK  161 (283)
T ss_pred             EEEEecCcchhh-ccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChh-hhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            899999863221 12344444421  111111    345788899999974 5678999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          168 IILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       168 llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      +|||||||++||+.++..+.+.+.+.    +.|||++|||++++..+||++++|++|+++ +.|+++++..
T Consensus       162 lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~-~~g~~~~~~~  231 (283)
T PRK13636        162 VLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVI-LQGNPKEVFA  231 (283)
T ss_pred             EEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHhc
Confidence            99999999999999999887776543    579999999999999999999999999997 6788887643

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=100.00  E-value=1.2e-48  Score=324.06  Aligned_cols=191  Identities=20%  Similarity=0.382  Sum_probs=159.9

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------eEEEEEeecc
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------VRIAVFSQHH  101 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------~~~~~~~q~~  101 (239)
                      ++++|+++.|+ ++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.       ..++|++|++
T Consensus         1 l~~~~l~~~~~-~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~   79 (210)
T cd03269           1 LEVENVTKRFG-RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER   79 (210)
T ss_pred             CEEEEEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC
Confidence            47899999995 457999999999999999999999999999999999999999999998763       3589999986


Q ss_pred             CCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 026376          102 VDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS  175 (239)
Q Consensus       102 ~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt  175 (239)
                      ...  ...+..+++..  ....    ...+++.++++.+++.. ..++++.+||||||||++|||||+.+|++|||||||
T Consensus        80 ~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~  156 (210)
T cd03269          80 GLY--PKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSE-YANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPF  156 (210)
T ss_pred             cCC--cCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChH-HHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            322  12233333221  1111    12346778999999964 456788999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376          176 NHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       176 ~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~  223 (239)
                      ++||+.++..+.+.+++.   +.|||++|||.+++..+||++++|++|++.
T Consensus       157 ~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~  207 (210)
T cd03269         157 SGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAV  207 (210)
T ss_pred             cCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEE
Confidence            999999999888877653   569999999999999999999999999986

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=100.00  E-value=1.9e-48  Score=326.27  Aligned_cols=196  Identities=24%  Similarity=0.382  Sum_probs=158.7

Q ss_pred             eEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------
Q 026376           28 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------   91 (239)
Q Consensus        28 ~l~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------   91 (239)
                      +|+++|++++|++.   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.             
T Consensus         1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (228)
T cd03257           1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR   80 (228)
T ss_pred             CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence            47899999999543   26899999999999999999999999999999999999999999987652             


Q ss_pred             -eEEEEEeeccCCCCCCCCcHHHHHH---HhCC-CCcH---HH-HHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHh
Q 026376           92 -VRIAVFSQHHVDGLDLSSNPLLYMM---RCFP-GVPE---QK-LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT  162 (239)
Q Consensus        92 -~~~~~~~q~~~~~~~~~~~~~~~~~---~~~~-~~~~---~~-~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral  162 (239)
                       ..++|++|++...+....+...++.   .... ....   .. +.++++.+++.....++++.+||||||||++|||||
T Consensus        81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral  160 (228)
T cd03257          81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL  160 (228)
T ss_pred             hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence             2589999986322222233333332   1111 1111   12 247888999853456788999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376          163 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       163 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~  223 (239)
                      +.+|++|||||||++||+.++..+.+.+.+.    +.|||++|||++++..+||++++|++|+++
T Consensus       161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~  225 (228)
T cd03257         161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIV  225 (228)
T ss_pred             hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEE
Confidence            9999999999999999999999888877643    579999999999999999999999999986

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=1.6e-48  Score=370.34  Aligned_cols=208  Identities=31%  Similarity=0.580  Sum_probs=179.5

Q ss_pred             CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCC
Q 026376           25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG  104 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~  104 (239)
                      ++++|+++||++.|+ ++.+|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.++....++|++|+.. .
T Consensus       316 ~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~-~  393 (635)
T PRK11147        316 GKIVFEMENVNYQID-GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRA-E  393 (635)
T ss_pred             CCceEEEeeeEEEEC-CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCccc-c
Confidence            466899999999995 45799999999999999999999999999999999999999999999865568999999752 2


Q ss_pred             CCCCCcHHHHHHHhCC----CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 026376          105 LDLSSNPLLYMMRCFP----GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL  180 (239)
Q Consensus       105 ~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~  180 (239)
                      +....++..++.....    .....++.++++.+++.....++++.+|||||||||+|||||+.+|++|||||||||||+
T Consensus       394 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~  473 (635)
T PRK11147        394 LDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDV  473 (635)
T ss_pred             cCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence            3333455555432211    111446788899999965456789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEe-CCeEEeeCCChhHHHH
Q 026376          181 DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVS-EGKATPFHGTFHDYKK  234 (239)
Q Consensus       181 ~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~-~G~i~~~~g~~~~~~~  234 (239)
                      .++..+.+.++++++|||+||||++++..+||++++|+ +|++..|.|+|++|.+
T Consensus       474 ~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~  528 (635)
T PRK11147        474 ETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ  528 (635)
T ss_pred             HHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence            99999999999888899999999999999999999998 8999999999999965

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-48  Score=343.89  Aligned_cols=205  Identities=20%  Similarity=0.298  Sum_probs=167.4

Q ss_pred             eEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC----CCceeEEecCce--------
Q 026376           28 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ----PSSGTVFRSAKV--------   92 (239)
Q Consensus        28 ~l~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~----p~~G~i~~~~~~--------   92 (239)
                      +|+++||++.|+..   ..+|+||||+|++||+++|+|+||||||||+++|+|+++    |++|+|.+++..        
T Consensus         3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~   82 (326)
T PRK11022          3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE   82 (326)
T ss_pred             eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence            68999999999642   359999999999999999999999999999999999997    489999987631        


Q ss_pred             -------EEEEEeeccCCCCCCCCcHHHHHH---HhCCC----CcHHHHHHHHHhcCCCc--ccccCCCCCCChHHHHHH
Q 026376           93 -------RIAVFSQHHVDGLDLSSNPLLYMM---RCFPG----VPEQKLRAHLGSFGVTG--NLALQPMYTLSGGQKSRV  156 (239)
Q Consensus        93 -------~~~~~~q~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~l~~~~l~~--~~~~~~~~~LSgGqkqrv  156 (239)
                             .++|++|++...++...+....+.   .....    ...+++.++++.+++.+  ...++++++|||||||||
T Consensus        83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv  162 (326)
T PRK11022         83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV  162 (326)
T ss_pred             HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence                   489999997433333333322221   11111    12356788999999964  235678999999999999


Q ss_pred             HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376          157 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       157 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                      +|||||+.+|++||+||||++||+.++..+++.|++.    +.|+|+||||++.+.++||+|++|.+|+++ ..|+.+++
T Consensus       163 ~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~iv-e~g~~~~~  241 (326)
T PRK11022        163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVV-ETGKAHDI  241 (326)
T ss_pred             HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence            9999999999999999999999999999888777543    569999999999999999999999999997 56877665


Q ss_pred             H
Q 026376          233 K  233 (239)
Q Consensus       233 ~  233 (239)
                      .
T Consensus       242 ~  242 (326)
T PRK11022        242 F  242 (326)
T ss_pred             h
Confidence            4

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-48  Score=370.02  Aligned_cols=204  Identities=25%  Similarity=0.423  Sum_probs=173.8

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCC
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDL  107 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~  107 (239)
                      ||.++||+++|+ ++.+|+|+||+|.+|+++||+||||||||||||+|+|+++|++|+|.+.+...++|++|..... . 
T Consensus         1 ~i~i~nls~~~g-~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~-~-   77 (638)
T PRK10636          1 MIVFSSLQIRRG-VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPAL-P-   77 (638)
T ss_pred             CEEEEEEEEEeC-CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCC-C-
Confidence            589999999995 5679999999999999999999999999999999999999999999998877899999964221 1 


Q ss_pred             CCcHHHHHH-----------------------------Hh---CC-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHH
Q 026376          108 SSNPLLYMM-----------------------------RC---FP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKS  154 (239)
Q Consensus       108 ~~~~~~~~~-----------------------------~~---~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq  154 (239)
                       .+.+.++.                             ..   .. .....++.++++.+|+.....++++.+|||||||
T Consensus        78 -~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerq  156 (638)
T PRK10636         78 -QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRM  156 (638)
T ss_pred             -CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHH
Confidence             11111000                             00   00 0123567889999999644567899999999999


Q ss_pred             HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          155 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       155 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      ||+|||||+.+|+||||||||||||+.++.++.+.|.++++|||+||||++++..+||++++|++|++..+.|+|+.|..
T Consensus       157 Rv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~~  236 (638)
T PRK10636        157 RLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEV  236 (638)
T ss_pred             HHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHHHH
Confidence            99999999999999999999999999999999999999888999999999999999999999999999888999999975


Q ss_pred             H
Q 026376          235 M  235 (239)
Q Consensus       235 ~  235 (239)
                      .
T Consensus       237 ~  237 (638)
T PRK10636        237 Q  237 (638)
T ss_pred             H
Confidence            3

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=100.00  E-value=2.5e-48  Score=328.67  Aligned_cols=202  Identities=21%  Similarity=0.362  Sum_probs=168.6

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEE
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI   94 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~   94 (239)
                      ++|+++|+++.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.            ..+
T Consensus         1 ~~i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i   79 (242)
T TIGR03411         1 PILYLEGLSVSFD-GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI   79 (242)
T ss_pred             CeEEEEeeEEEcC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence            3689999999995 457999999999999999999999999999999999999999999998763            248


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHhCC--------------CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRCFP--------------GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK  160 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lar  160 (239)
                      +|++|++...  ...+..+++.....              .....++.++++.+++.+ ..++++.+|||||+|||+|||
T Consensus        80 ~~~~q~~~~~--~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Ge~qrv~lar  156 (242)
T TIGR03411        80 GRKFQKPTVF--ENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD-EADRLAGLLSHGQKQWLEIGM  156 (242)
T ss_pred             eEeccccccC--CCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHH
Confidence            9999986322  22233333321100              012346788999999974 557889999999999999999


Q ss_pred             HhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          161 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       161 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      ||+.+|++|||||||++||+.++..+.+.++++  +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus       157 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~-~~~~~~~~~  230 (242)
T TIGR03411       157 LLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVL-AEGSLDQVQ  230 (242)
T ss_pred             HHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEE-eeCCHHHHh
Confidence            999999999999999999999999998888764  469999999999999999999999999997 678888764

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=100.00  E-value=9.8e-49  Score=324.74  Aligned_cols=190  Identities=21%  Similarity=0.314  Sum_probs=159.2

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEEEEe
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVFS   98 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~~~~   98 (239)
                      |+++|++++|+ +..+++|+||++++| +++|+||||||||||+++|+|+++|++|+|.+++.          ..++|++
T Consensus         1 i~~~~~~~~~~-~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~   78 (211)
T cd03264           1 LQLENLTKRYG-KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP   78 (211)
T ss_pred             CEEEEEEEEEC-CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEec
Confidence            47899999995 457999999999999 99999999999999999999999999999998763          3589999


Q ss_pred             eccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376           99 QHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD  172 (239)
Q Consensus        99 q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD  172 (239)
                      |++...  ...+..+++..  .....    ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++||||
T Consensus        79 q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~llllD  155 (211)
T cd03264          79 QEFGVY--PNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGD-RAKKKIGSLSGGMRRRVGIAQALVGDPSILIVD  155 (211)
T ss_pred             CCCccc--ccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHH-HHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            986422  22233333321  11111    1346778999999974 457888999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376          173 EPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       173 EPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~  223 (239)
                      |||++||+.++..+.+.+.+.  +.|||++|||++++.++||++++|++|+++
T Consensus       156 EPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~  208 (211)
T cd03264         156 EPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLV  208 (211)
T ss_pred             CCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence            999999999999998888754  469999999999999999999999999986

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.4e-48  Score=335.24  Aligned_cols=203  Identities=29%  Similarity=0.449  Sum_probs=168.4

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV   96 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~   96 (239)
                      +++++|++++|++...+|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.+++.           ..++|
T Consensus         3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~   82 (277)
T PRK13652          3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL   82 (277)
T ss_pred             eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence            6899999999964456899999999999999999999999999999999999999999998763           24899


Q ss_pred             EeeccCCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 026376           97 FSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL  170 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~lll  170 (239)
                      ++|++...+ ...+...++..  ......    .+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++||
T Consensus        83 v~q~~~~~~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Gq~qrl~laraL~~~p~lli  160 (277)
T PRK13652         83 VFQNPDDQI-FSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEE-LRDRVPHHLSGGEKKRVAIAGVIAMEPQVLV  160 (277)
T ss_pred             EecCccccc-ccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChh-HhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence            999863211 12244443321  111122    235778999999974 5678899999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          171 LDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       171 lDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      |||||++||+.++..+.+.+++.    +.|||++|||++++.++||++++|++|+++ +.|+++++.
T Consensus       161 lDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~-~~g~~~~~~  226 (277)
T PRK13652        161 LDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIV-AYGTVEEIF  226 (277)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEE-EECCHHHHh
Confidence            99999999999999888777542    569999999999999999999999999997 678888874

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.6e-48  Score=326.14  Aligned_cols=194  Identities=26%  Similarity=0.372  Sum_probs=160.0

Q ss_pred             CCeEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------
Q 026376           26 PPIISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------   91 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------   91 (239)
                      +++|+++|+++.|+++   ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|++++.           
T Consensus         3 ~~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~   82 (233)
T PRK11629          3 KILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKA   82 (233)
T ss_pred             CceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHH
Confidence            3579999999999642   46899999999999999999999999999999999999999999998762           


Q ss_pred             ----eEEEEEeeccCCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 026376           92 ----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI  161 (239)
Q Consensus        92 ----~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lara  161 (239)
                          ..++|++|++...  ...+...++..  ....    ...+++.++++.+++.+ ..++++.+||||||||++||||
T Consensus        83 ~~~~~~i~~v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qrl~la~a  159 (233)
T PRK11629         83 ELRNQKLGFIYQFHHLL--PDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEH-RANHRPSELSGGERQRVAIARA  159 (233)
T ss_pred             HHHhccEEEEecCcccC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHH
Confidence                2489999986322  22234433321  1111    12346788999999974 4577889999999999999999


Q ss_pred             hccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376          162 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       162 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~  223 (239)
                      |+.+|++|||||||++||+.++..+.+.+.+.    +.|||++|||++++..+ |++++|++|+++
T Consensus       160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~~G~i~  224 (233)
T PRK11629        160 LVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLT  224 (233)
T ss_pred             HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEECCEEE
Confidence            99999999999999999999999888877643    56999999999999874 699999999986

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.3e-48  Score=331.68  Aligned_cols=193  Identities=26%  Similarity=0.354  Sum_probs=160.7

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce------EEEEEeecc
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------RIAVFSQHH  101 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------~~~~~~q~~  101 (239)
                      ||+++|++++|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++..      .++|++|++
T Consensus         1 ml~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~   79 (255)
T PRK11248          1 MLQISHLYADYG-GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNE   79 (255)
T ss_pred             CEEEEEEEEEeC-CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCC
Confidence            589999999995 4579999999999999999999999999999999999999999999987632      489999986


Q ss_pred             CCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 026376          102 VDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS  175 (239)
Q Consensus       102 ~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt  175 (239)
                      ..  ....+...++..  .....    ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||
T Consensus        80 ~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt  156 (255)
T PRK11248         80 GL--LPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEG-AEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPF  156 (255)
T ss_pred             cc--CCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChh-HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            32  222334333321  11111    1345788999999974 457888999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEe--CCeEEe
Q 026376          176 NHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVS--EGKATP  224 (239)
Q Consensus       176 ~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~--~G~i~~  224 (239)
                      ++||+.++..+.+.|.+.    +.|||++|||++++..+||++++|+  +|+++.
T Consensus       157 ~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~  211 (255)
T PRK11248        157 GALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVE  211 (255)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEE
Confidence            999999999988877653    5699999999999999999999998  488863

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.2e-48  Score=335.93  Aligned_cols=204  Identities=28%  Similarity=0.372  Sum_probs=166.5

Q ss_pred             eEEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------
Q 026376           28 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------   91 (239)
Q Consensus        28 ~l~~~~l~~~y~~~----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------   91 (239)
                      .|+++|++++|++.    ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.            
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   81 (280)
T PRK13649          2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK   81 (280)
T ss_pred             eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence            48999999999642    35899999999999999999999999999999999999999999988653            


Q ss_pred             ---eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHh
Q 026376           92 ---VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT  162 (239)
Q Consensus        92 ---~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral  162 (239)
                         ..++|++|++...+. ..+...++..  ......    ...+.++++.+++.....++++.+||||||||++|||||
T Consensus        82 ~~~~~i~~~~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al  160 (280)
T PRK13649         82 QIRKKVGLVFQFPESQLF-EETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGIL  160 (280)
T ss_pred             HHHhheEEEeeChhhhhc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence               248999998521111 1244443321  111111    234677889999964455788999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          163 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       163 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      +.+|++|||||||++||+.++..+.+.|++.   +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus       161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  233 (280)
T PRK13649        161 AMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLV-LSGKPKDIF  233 (280)
T ss_pred             HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence            9999999999999999999999988877653   569999999999999999999999999997 568877753

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-48  Score=363.14  Aligned_cols=205  Identities=25%  Similarity=0.442  Sum_probs=172.6

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCC
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDL  107 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~  107 (239)
                      ||+++|++++|+ ++.+|+|+||+|.+||+++|+||||||||||||+|+|+++|++|+|.+++...++|++|++..... 
T Consensus         1 ml~i~~ls~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~-   78 (530)
T PRK15064          1 MLSTANITMQFG-AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEE-   78 (530)
T ss_pred             CEEEEEEEEEeC-CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCC-
Confidence            589999999995 457999999999999999999999999999999999999999999999877779999998632211 


Q ss_pred             CCcHHHHHHH----------------hCC----------------------CCcHHHHHHHHHhcCCCcccccCCCCCCC
Q 026376          108 SSNPLLYMMR----------------CFP----------------------GVPEQKLRAHLGSFGVTGNLALQPMYTLS  149 (239)
Q Consensus       108 ~~~~~~~~~~----------------~~~----------------------~~~~~~~~~~l~~~~l~~~~~~~~~~~LS  149 (239)
                       .+..+++..                ...                      .....++.++++.+|+.+...++++.+||
T Consensus        79 -~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS  157 (530)
T PRK15064         79 -FTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVA  157 (530)
T ss_pred             -CcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcC
Confidence             122221110                000                      01134677899999996534457889999


Q ss_pred             hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCCh
Q 026376          150 GGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTF  229 (239)
Q Consensus       150 gGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~  229 (239)
                      |||||||+|||||+.+|++|||||||++||+.++.++.+.+.+.+.|||+||||++++..+||++++|++|+++.+.|++
T Consensus       158 gGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~  237 (530)
T PRK15064        158 PGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNY  237 (530)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCH
Confidence            99999999999999999999999999999999999999999887889999999999999999999999999996578999


Q ss_pred             hHHHHH
Q 026376          230 HDYKKM  235 (239)
Q Consensus       230 ~~~~~~  235 (239)
                      ++|.++
T Consensus       238 ~~~~~~  243 (530)
T PRK15064        238 DEYMTA  243 (530)
T ss_pred             HHHHHH
Confidence            988643

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.5e-48  Score=331.05  Aligned_cols=202  Identities=22%  Similarity=0.396  Sum_probs=167.0

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEE
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI   94 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~   94 (239)
                      ++|+++|++++|+ +..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.            ..+
T Consensus         4 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i   82 (255)
T PRK11300          4 PLLSVSGLMMRFG-GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV   82 (255)
T ss_pred             ceEEEeeEEEEEC-CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence            4799999999995 457999999999999999999999999999999999999999999998763            137


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHh-------------C-----CC---CcHHHHHHHHHhcCCCcccccCCCCCCChHHH
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRC-------------F-----PG---VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK  153 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~-------------~-----~~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk  153 (239)
                      +|++|++...  ...+...++...             .     ..   .....+.++++.+++.. ..++++.+||||||
T Consensus        83 ~~~~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~  159 (255)
T PRK11300         83 VRTFQHVRLF--REMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLE-HANRQAGNLAYGQQ  159 (255)
T ss_pred             EEeccCcccC--CCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhh-hhhCChhhCCHHHH
Confidence            8899986422  222343333210             0     00   01235677889999964 56788999999999


Q ss_pred             HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCCh
Q 026376          154 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTF  229 (239)
Q Consensus       154 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~  229 (239)
                      ||++|||||+.+|++|||||||+|||+.++..+.+.|.+.    +.|||++||+++++..+||++++|++|+++ +.|++
T Consensus       160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~-~~~~~  238 (255)
T PRK11300        160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPL-ANGTP  238 (255)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-ecCCH
Confidence            9999999999999999999999999999999888877542    569999999999999999999999999997 67888


Q ss_pred             hHHH
Q 026376          230 HDYK  233 (239)
Q Consensus       230 ~~~~  233 (239)
                      +++.
T Consensus       239 ~~~~  242 (255)
T PRK11300        239 EEIR  242 (255)
T ss_pred             HHHh
Confidence            7764

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=3.3e-48  Score=331.20  Aligned_cols=201  Identities=26%  Similarity=0.382  Sum_probs=167.5

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV   96 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~   96 (239)
                      +|+++|+++.|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.           ..++|
T Consensus         2 ~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (258)
T PRK13548          2 MLEARNLSVRLG-GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV   80 (258)
T ss_pred             eEEEEeEEEEeC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence            689999999995 456999999999999999999999999999999999999999999998763           24899


Q ss_pred             EeeccCCCCCCCCcHHHHHHHhC--CC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc------c
Q 026376           97 FSQHHVDGLDLSSNPLLYMMRCF--PG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF------K  164 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~------~  164 (239)
                      ++|++...  ...+..+++....  ..    ....++.++++.+++.+ ..++.+.+||||||||++|||||+      .
T Consensus        81 ~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGe~qrv~la~al~~~~~~~~  157 (258)
T PRK13548         81 LPQHSSLS--FPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAH-LAGRDYPQLSGGEQQRVQLARVLAQLWEPDG  157 (258)
T ss_pred             EccCCcCC--CCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHh-HhcCCcccCCHHHHHHHHHHHHHhcccccCC
Confidence            99986422  2334444443211  11    12345778999999964 567889999999999999999999      5


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      +|++|||||||++||+.++..+.+.+++    .+.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus       158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  229 (258)
T PRK13548        158 PPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLV-ADGTPAEVL  229 (258)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEE-eeCCHHHHh
Confidence            9999999999999999999888777754    3569999999999999999999999999997 678887764

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.1e-48  Score=331.76  Aligned_cols=201  Identities=27%  Similarity=0.403  Sum_probs=167.4

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV   96 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~   96 (239)
                      +|+++|++++|+ ++.+|+++||++++|++++|+|+||||||||+++|+|+++|++|+|.+++.           ..++|
T Consensus         2 ~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (255)
T PRK11231          2 TLRTENLTVGYG-TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL   80 (255)
T ss_pred             EEEEEeEEEEEC-CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence            689999999995 457999999999999999999999999999999999999999999988763           24899


Q ss_pred             EeeccCCCCCCCCcHHHHHHHh-------CC---CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 026376           97 FSQHHVDGLDLSSNPLLYMMRC-------FP---GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP  166 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p  166 (239)
                      ++|++...  ...+..+++...       +.   .....++.++++.+++.. ..++++.+|||||+||++||||++.+|
T Consensus        81 ~~q~~~~~--~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p  157 (255)
T PRK11231         81 LPQHHLTP--EGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINH-LADRRLTDLSGGQRQRAFLAMVLAQDT  157 (255)
T ss_pred             ecccCCCC--CCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHH-HHcCCcccCCHHHHHHHHHHHHHhcCC
Confidence            99986422  122333333211       11   112345778899999964 567889999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          167 HIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       167 ~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      ++|||||||+|||+.++..+.+.+.+.   +.|||++|||++++.++||++++|++|++. ..|+++++.
T Consensus       158 ~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  226 (255)
T PRK11231        158 PVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVM-AQGTPEEVM  226 (255)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEE-EEcCHHHhc
Confidence            999999999999999999988877643   569999999999999999999999999997 578877663

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.6e-48  Score=334.33  Aligned_cols=203  Identities=22%  Similarity=0.331  Sum_probs=168.3

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI   94 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~   94 (239)
                      +++|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.           ..+
T Consensus         9 ~~~l~i~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i   87 (265)
T PRK10575          9 DTTFALRNVSFRVP-GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV   87 (265)
T ss_pred             CceEEEeeEEEEEC-CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence            45799999999995 457999999999999999999999999999999999999999999998763           248


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHhC----------CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRCF----------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK  164 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~  164 (239)
                      +|++|++...  ...+...++....          .....+++.++++.+++.+ ..++++.+||||||||++|||||+.
T Consensus        88 ~~v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~laral~~  164 (265)
T PRK10575         88 AYLPQQLPAA--EGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKP-LAHRLVDSLSGGERQRAWIAMLVAQ  164 (265)
T ss_pred             EEeccCCCCC--CCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH-HhcCCcccCCHHHHHHHHHHHHHhc
Confidence            9999985321  2234444432110          0112345788999999964 5678899999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      +|++|||||||++||+.++..+.+.+.+.    +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus       165 ~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~-~~~~~~~~~  236 (265)
T PRK10575        165 DSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMI-AQGTPAELM  236 (265)
T ss_pred             CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-EecCHHHhc
Confidence            99999999999999999998887777543    579999999999999999999999999996 578877764

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=100.00  E-value=2.1e-48  Score=323.12  Aligned_cols=191  Identities=28%  Similarity=0.408  Sum_probs=158.1

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------------eEE
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------VRI   94 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~~~   94 (239)
                      ++++|+++.|++++.+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+++.              ..+
T Consensus         1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i   80 (214)
T cd03292           1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI   80 (214)
T ss_pred             CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence            468999999964456999999999999999999999999999999999999999999988653              248


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI  168 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~l  168 (239)
                      +|++|++...  ...+..+++..  .....    ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++
T Consensus        81 ~~v~q~~~~~--~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~l  157 (214)
T cd03292          81 GVVFQDFRLL--PDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSH-KHRALPAELSGGEQQRVAIARAIVNSPTI  157 (214)
T ss_pred             EEEecCchhc--cCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HhhCChhhcCHHHHHHHHHHHHHHcCCCE
Confidence            9999986322  22233333321  11111    1345778999999964 45778899999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeE
Q 026376          169 ILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKA  222 (239)
Q Consensus       169 lllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i  222 (239)
                      +||||||++||+.++..+.+.+++.   +.|||++|||.+++..+||++++|++|++
T Consensus       158 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~  214 (214)
T cd03292         158 LIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL  214 (214)
T ss_pred             EEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            9999999999999999888877653   57999999999999999999999999974

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.2e-48  Score=328.05  Aligned_cols=201  Identities=18%  Similarity=0.260  Sum_probs=167.6

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------------
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------------   91 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------------   91 (239)
                      +|+++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+++.                
T Consensus         2 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   80 (242)
T PRK11124          2 SIQLNGINCFYG-AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL   80 (242)
T ss_pred             EEEEEeeEEEEC-CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence            689999999995 457999999999999999999999999999999999999999999988653                


Q ss_pred             -eEEEEEeeccCCCCCCCCcHHHHHHH---hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 026376           92 -VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF  163 (239)
Q Consensus        92 -~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~  163 (239)
                       ..++|++|++...  ...+..+++..   .....    ...++.++++.+|+.. ..++++.+||||||||++|||||+
T Consensus        81 ~~~i~~~~q~~~~~--~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~laral~  157 (242)
T PRK11124         81 RRNVGMVFQQYNLW--PHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKP-YADRFPLHLSGGQQQRVAIARALM  157 (242)
T ss_pred             HhheEEEecCcccc--CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHh
Confidence             1489999986422  22344444321   11111    1345778899999964 567889999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          164 KKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      .+|++|||||||++||+.++..+.+.+++   .+.|||++|||.+++..+||++++|++|++. +.|+++++.
T Consensus       158 ~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~~  229 (242)
T PRK11124        158 MEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIV-EQGDASCFT  229 (242)
T ss_pred             cCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHhc
Confidence            99999999999999999999988887764   3579999999999999999999999999997 678888764

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=100.00  E-value=3.1e-48  Score=323.75  Aligned_cols=192  Identities=23%  Similarity=0.382  Sum_probs=157.9

Q ss_pred             eEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------
Q 026376           28 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------   91 (239)
Q Consensus        28 ~l~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------   91 (239)
                      +|+++|++++|+++   ..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.             
T Consensus         1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (221)
T TIGR02211         1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL   80 (221)
T ss_pred             CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence            37899999999532   46999999999999999999999999999999999999999999988652             


Q ss_pred             --eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 026376           92 --VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF  163 (239)
Q Consensus        92 --~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~  163 (239)
                        ..++|++|++...  ...+..+++..  .....    ..+++.++++.+++.+ ..++++.+||||||||++|||||+
T Consensus        81 ~~~~i~~v~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~  157 (221)
T TIGR02211        81 RNKKLGFIYQFHHLL--PDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEH-RINHRPSELSGGERQRVAIARALV  157 (221)
T ss_pred             HHhcEEEEecccccC--CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHh
Confidence              2489999986322  22234433321  11111    1345778999999974 457888999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376          164 KKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~  223 (239)
                      .+|++|||||||++||+.++..+.+.+.+.    +.|||++|||++++.. ||++++|++|+++
T Consensus       158 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~  220 (221)
T TIGR02211       158 NQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF  220 (221)
T ss_pred             CCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence            999999999999999999999888877642    5699999999999875 7999999999874

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.7e-48  Score=329.50  Aligned_cols=202  Identities=21%  Similarity=0.313  Sum_probs=167.2

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIA   95 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~~   95 (239)
                      +++++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.            ..++
T Consensus         3 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~   81 (241)
T PRK10895          3 TLTAKNLAKAYK-GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG   81 (241)
T ss_pred             eEEEeCcEEEeC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence            689999999995 457999999999999999999999999999999999999999999988762            3589


Q ss_pred             EEeeccCCCCCCCCcHHHHHHHh---CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376           96 VFSQHHVDGLDLSSNPLLYMMRC---FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI  168 (239)
Q Consensus        96 ~~~q~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~l  168 (239)
                      |++|++...  ...+..+++...   ....    ....+.++++.+++.. ..++++.+||||||||++|||||+.+|++
T Consensus        82 ~~~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~l  158 (241)
T PRK10895         82 YLPQEASIF--RRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEH-LRDSMGQSLSGGERRRVEIARALAANPKF  158 (241)
T ss_pred             EeccCCccc--ccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHH-HhhcchhhCCHHHHHHHHHHHHHhcCCCE
Confidence            999986322  222444433211   1111    1345778899999964 45788899999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          169 ILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       169 lllDEPt~~LD~~~~~~l~~~l~---~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |||||||++||+.++..+.+.+.   +.+.|||++|||++++..+||++++|++|+++ +.|+++++.+
T Consensus       159 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~~  226 (241)
T PRK10895        159 ILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLI-AHGTPTEILQ  226 (241)
T ss_pred             EEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEE-eeCCHHHHhc
Confidence            99999999999999987766654   34679999999999999999999999999997 6788887743

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=100.00  E-value=1.7e-48  Score=327.33  Aligned_cols=201  Identities=19%  Similarity=0.289  Sum_probs=163.6

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEEEE
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIAV   96 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~~~   96 (239)
                      |+++||++.|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.            ..++|
T Consensus         1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~   79 (230)
T TIGR03410         1 LEVSNLNVYYG-QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY   79 (230)
T ss_pred             CEEEeEEEEeC-CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence            47899999995 457999999999999999999999999999999999999999999988752            24899


Q ss_pred             EeeccCCCCCCCCcHHHHHHH---hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 026376           97 FSQHHVDGLDLSSNPLLYMMR---CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE  173 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDE  173 (239)
                      ++|++...  ...+...++..   .......+...++++.++......++++.+||||||||++|||||+.+|++|||||
T Consensus        80 ~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDE  157 (230)
T TIGR03410        80 VPQGREIF--PRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDE  157 (230)
T ss_pred             eccCCccc--CCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence            99986422  22244333321   11111233456677777632234578899999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          174 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       174 Pt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      ||++||+.++..+.+.|.+.    +.|||++|||++++..+||++++|++|+++ ..|+.+++.
T Consensus       158 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~-~~~~~~~~~  220 (230)
T TIGR03410       158 PTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVV-ASGAGDELD  220 (230)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHcC
Confidence            99999999999988877653    569999999999999999999999999997 678887763

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=3.9e-48  Score=362.86  Aligned_cols=205  Identities=23%  Similarity=0.389  Sum_probs=173.9

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCC
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL  105 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~  105 (239)
                      .++|+++|+++.|++++.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++....++|++|++....
T Consensus         4 ~~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~   83 (556)
T PRK11819          4 QYIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDP   83 (556)
T ss_pred             cEEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCC
Confidence            45899999999995246799999999999999999999999999999999999999999999877778999999864221


Q ss_pred             CCCCcHHHHHHHh-----------------CC-C------------------------CcHHHHHHHHHhcCCCcccccC
Q 026376          106 DLSSNPLLYMMRC-----------------FP-G------------------------VPEQKLRAHLGSFGVTGNLALQ  143 (239)
Q Consensus       106 ~~~~~~~~~~~~~-----------------~~-~------------------------~~~~~~~~~l~~~~l~~~~~~~  143 (239)
                        ..+..+++...                 .. .                        ....++.++++.+++. . .++
T Consensus        84 --~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~-~~~  159 (556)
T PRK11819         84 --EKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP-P-WDA  159 (556)
T ss_pred             --CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-c-ccC
Confidence              12222222100                 00 0                        0134577789999995 3 578


Q ss_pred             CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376          144 PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       144 ~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~  223 (239)
                      ++++|||||||||+|||||+.+|++||||||||+||+.++.++.+.|++.++|||+||||++++..+||++++|++|+++
T Consensus       160 ~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~i~  239 (556)
T PRK11819        160 KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRGI  239 (556)
T ss_pred             chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCEEE
Confidence            89999999999999999999999999999999999999999999999988889999999999999999999999999987


Q ss_pred             eeCCChhHHHH
Q 026376          224 PFHGTFHDYKK  234 (239)
Q Consensus       224 ~~~g~~~~~~~  234 (239)
                      .+.|++++|.+
T Consensus       240 ~~~g~~~~~~~  250 (556)
T PRK11819        240 PWEGNYSSWLE  250 (556)
T ss_pred             EecCCHHHHHH
Confidence            68899998854

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=100.00  E-value=3.8e-48  Score=341.17  Aligned_cols=208  Identities=20%  Similarity=0.307  Sum_probs=168.8

Q ss_pred             CCCeEEEEeeEEEcCC---CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCC---ceeEEecCc-------
Q 026376           25 GPPIISFSDASFGYPG---GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS---SGTVFRSAK-------   91 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~---~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~~-------   91 (239)
                      ..++|+++|+++.|+.   ...+++||||+|++||+++|+|+||||||||+++|+|+++|+   +|+|.+++.       
T Consensus         9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~   88 (330)
T PRK09473          9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE   88 (330)
T ss_pred             CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCH
Confidence            3568999999999952   246899999999999999999999999999999999999996   999998763       


Q ss_pred             --------eEEEEEeeccCCCCCCCCcHHHHHH---HhCCCCc----HHHHHHHHHhcCCCcc--cccCCCCCCChHHHH
Q 026376           92 --------VRIAVFSQHHVDGLDLSSNPLLYMM---RCFPGVP----EQKLRAHLGSFGVTGN--LALQPMYTLSGGQKS  154 (239)
Q Consensus        92 --------~~~~~~~q~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~l~~~~l~~~--~~~~~~~~LSgGqkq  154 (239)
                              ..++|++|++...++...+....+.   .......    .+++.++++.+++.+.  ..++.+++|||||+|
T Consensus        89 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~Q  168 (330)
T PRK09473         89 KELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQ  168 (330)
T ss_pred             HHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHH
Confidence                    2599999997433333333333221   1111111    3467788999998642  245788999999999


Q ss_pred             HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChh
Q 026376          155 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFH  230 (239)
Q Consensus       155 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~  230 (239)
                      ||+|||||+.+|++||+||||++||+.++..+++.|.+.    +.|+|+||||++.+.++||++++|++|+++ ..|+.+
T Consensus       169 Rv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~iv-e~g~~~  247 (330)
T PRK09473        169 RVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTM-EYGNAR  247 (330)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EECCHH
Confidence            999999999999999999999999999999887766543    569999999999999999999999999997 568777


Q ss_pred             HHH
Q 026376          231 DYK  233 (239)
Q Consensus       231 ~~~  233 (239)
                      ++.
T Consensus       248 ~i~  250 (330)
T PRK09473        248 DVF  250 (330)
T ss_pred             HHH
Confidence            654

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=100.00  E-value=3.2e-48  Score=327.94  Aligned_cols=202  Identities=23%  Similarity=0.365  Sum_probs=163.5

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCc--CCCceeEEecCc------------eEE
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--QPSSGTVFRSAK------------VRI   94 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~--~p~~G~i~~~~~------------~~~   94 (239)
                      |+++|++++|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|++  +|++|+|.+++.            ..+
T Consensus         1 l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i   79 (243)
T TIGR01978         1 LKIKDLHVSVE-DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL   79 (243)
T ss_pred             CeEeeEEEEEC-CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence            47899999995 457999999999999999999999999999999999995  799999988763            137


Q ss_pred             EEEeeccCCCCCCCCcHHHHHH---HhCCC------Cc----HHHHHHHHHhcCCCcccccCCCC-CCChHHHHHHHHHH
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMM---RCFPG------VP----EQKLRAHLGSFGVTGNLALQPMY-TLSGGQKSRVAFAK  160 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~---~~~~~------~~----~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkqrv~lar  160 (239)
                      +|++|++...  ...+...++.   .....      ..    .+++.++++.+++.....++++. +||||||||++|||
T Consensus        80 ~~v~q~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~  157 (243)
T TIGR01978        80 FLAFQYPEEI--PGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQ  157 (243)
T ss_pred             Eeeecccccc--CCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHH
Confidence            8999986432  1222322221   11000      01    24577889999996444567776 59999999999999


Q ss_pred             HhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhh-cCeEEEEeCCeEEeeCCChhHHHH
Q 026376          161 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGS-VEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       161 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      ||+.+|++|||||||++||+.++..+.+.|.+.   +.|||+||||++++..+ ||++++|++|++. ..|+++++..
T Consensus       158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~  234 (243)
T TIGR01978       158 MALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIV-KSGDVELAKE  234 (243)
T ss_pred             HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEE-EecCHHHhcc
Confidence            999999999999999999999999988887654   56999999999999988 8999999999997 6788887653

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.5e-48  Score=332.25  Aligned_cols=203  Identities=32%  Similarity=0.486  Sum_probs=168.3

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------eEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VRI   94 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~~   94 (239)
                      +|+++|++++|+++..+++|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.             ..+
T Consensus         1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i   80 (275)
T PRK13639          1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV   80 (275)
T ss_pred             CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence            4789999999964456899999999999999999999999999999999999999999988763             248


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI  168 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~l  168 (239)
                      +|++|++...+ +..+..+++..  .....    ..+++.++++.+++.+ ..++++.+|||||+||++|||||+.+|++
T Consensus        81 ~~v~q~~~~~~-~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LS~Gq~qrv~laral~~~p~l  158 (275)
T PRK13639         81 GIVFQNPDDQL-FAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEG-FENKPPHHLSGGQKKRVAIAGILAMKPEI  158 (275)
T ss_pred             EEEeeChhhhh-ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-hhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            99999862111 12244443321  11111    1245778999999974 56789999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          169 ILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       169 lllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      |||||||++||+.++..+.+.+.+.   +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus       159 lllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  225 (275)
T PRK13639        159 IVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKII-KEGTPKEVF  225 (275)
T ss_pred             EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence            9999999999999999888877653   569999999999999999999999999997 578888764

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=100.00  E-value=4.9e-48  Score=324.11  Aligned_cols=194  Identities=23%  Similarity=0.311  Sum_probs=160.0

Q ss_pred             CCeEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------
Q 026376           26 PPIISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------   91 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------   91 (239)
                      +++|+++|++++|+++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.           
T Consensus         4 ~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~   83 (228)
T PRK10584          4 ENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARA   83 (228)
T ss_pred             CceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHH
Confidence            3579999999999642   25899999999999999999999999999999999999999999987652           


Q ss_pred             ----eEEEEEeeccCCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 026376           92 ----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI  161 (239)
Q Consensus        92 ----~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lara  161 (239)
                          ..++|++|++...  ...+..+++..  ....    ...+++.++++.+++.+ ..++++.+||||||||++||||
T Consensus        84 ~~~~~~i~~~~q~~~l~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Ge~qrl~la~a  160 (228)
T PRK10584         84 KLRAKHVGFVFQSFMLI--PTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGK-RLDHLPAQLSGGEQQRVALARA  160 (228)
T ss_pred             HHHhheEEEEEcccccC--CCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHh-HhhCChhhCCHHHHHHHHHHHH
Confidence                2589999986422  22234443321  1111    12356788999999974 4577889999999999999999


Q ss_pred             hccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376          162 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       162 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~  223 (239)
                      |+.+|++|||||||+|||+.++..+.+.+.+.    +.|||++|||++++. .||++++|++|+++
T Consensus       161 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~g~i~  225 (228)
T PRK10584        161 FNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA-RCDRRLRLVNGQLQ  225 (228)
T ss_pred             HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEE
Confidence            99999999999999999999999888877542    569999999999986 59999999999985

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=100.00  E-value=5e-48  Score=327.90  Aligned_cols=201  Identities=21%  Similarity=0.260  Sum_probs=166.5

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCC-----ceeEEecCc-----------
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-----SGTVFRSAK-----------   91 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~-----~G~i~~~~~-----------   91 (239)
                      +|+++|++++|+ +..+++|+||+|++||+++|+|+||||||||+++|+|+++|+     +|+|.+++.           
T Consensus         1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~   79 (247)
T TIGR00972         1 AIEIENLNLFYG-EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE   79 (247)
T ss_pred             CEEEEEEEEEEC-CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence            478999999995 456899999999999999999999999999999999999998     999987653           


Q ss_pred             --eEEEEEeeccCCCCCCCCcHHHHHHH--hCCC-----CcHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHH
Q 026376           92 --VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG-----VPEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFA  159 (239)
Q Consensus        92 --~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~la  159 (239)
                        ..++|++|++...  . .+..+++..  ....     ...+++.++++.+++..   ...++++.+||||||||++||
T Consensus        80 ~~~~i~~v~q~~~~~--~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la  156 (247)
T TIGR00972        80 LRRRVGMVFQKPNPF--P-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIA  156 (247)
T ss_pred             HHhheEEEecCcccC--C-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHH
Confidence              2489999986321  2 344443321  1111     11245778899999962   245678899999999999999


Q ss_pred             HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          160 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       160 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      |||+.+|++|||||||++||+.++..+.+.+++.  +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus       157 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  231 (247)
T TIGR00972       157 RALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELV-EYGPTEQIF  231 (247)
T ss_pred             HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence            9999999999999999999999999988887654  369999999999999999999999999997 678887764

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=100.00  E-value=4.1e-48  Score=323.64  Aligned_cols=198  Identities=23%  Similarity=0.362  Sum_probs=165.5

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------eEEEEEeecc
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------VRIAVFSQHH  101 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------~~~~~~~q~~  101 (239)
                      |+++|++++|+ ++.+|+++||++++||+++|+||||||||||+++|+|+++|++|+|.+++.       ..++|++|++
T Consensus         1 l~l~~v~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~   79 (223)
T TIGR03740         1 LETKNLSKRFG-KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESP   79 (223)
T ss_pred             CEEEeEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCC
Confidence            47899999995 457999999999999999999999999999999999999999999988763       2589999986


Q ss_pred             CCCCCCCCcHHHHHHH--hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 026376          102 VDGLDLSSNPLLYMMR--CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD  179 (239)
Q Consensus       102 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD  179 (239)
                      ...  ...+...++..  ........++.++++.+++.+ ..++++.+|||||+||++||||++.+|++|||||||++||
T Consensus        80 ~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD  156 (223)
T TIGR03740        80 PLY--ENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTN-TGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD  156 (223)
T ss_pred             Ccc--ccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcH-HHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCC
Confidence            322  22244443321  111234567888999999974 4678889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhH
Q 026376          180 LDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD  231 (239)
Q Consensus       180 ~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~  231 (239)
                      +.++..+.+.|.+.   +.|||++|||++++..+||++++|++|++. ..|++.+
T Consensus       157 ~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~-~~~~~~~  210 (223)
T TIGR03740       157 PIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLG-YQGKINK  210 (223)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEE-EecChhh
Confidence            99999988877653   569999999999999999999999999997 5666553

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.9e-48  Score=345.38  Aligned_cols=187  Identities=24%  Similarity=0.296  Sum_probs=156.1

Q ss_pred             ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------------eEEEEEeeccCCCCCC
Q 026376           43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VRIAVFSQHHVDGLDL  107 (239)
Q Consensus        43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~~~~~~~q~~~~~~~~  107 (239)
                      .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|++++.               ..++|++|++...  .
T Consensus        42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~--~  119 (400)
T PRK10070         42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM--P  119 (400)
T ss_pred             EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCC--C
Confidence            3799999999999999999999999999999999999999999998753               2599999986422  2


Q ss_pred             CCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 026376          108 SSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD  181 (239)
Q Consensus       108 ~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~  181 (239)
                      ..+..+++..  .....    ..+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||||++||+.
T Consensus       120 ~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~-~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~  198 (400)
T PRK10070        120 HMTVLDNTAFGMELAGINAEERREKALDALRQVGLEN-YAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPL  198 (400)
T ss_pred             CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh-hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHH
Confidence            2344443321  11111    1346778999999974 567889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          182 AVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       182 ~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      ++..+.+.|.+    .+.|||+||||++++..+||++++|++|+++ ..|+++++.
T Consensus       199 ~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~-~~g~~~~l~  253 (400)
T PRK10070        199 IRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVV-QVGTPDEIL  253 (400)
T ss_pred             HHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEE-ecCCHHHHH
Confidence            99988887754    3569999999999999999999999999997 578877764

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.8e-48  Score=332.73  Aligned_cols=203  Identities=25%  Similarity=0.385  Sum_probs=167.1

Q ss_pred             CeEEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eE
Q 026376           27 PIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR   93 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~   93 (239)
                      ++|+++|++++|++.  ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++.           ..
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (279)
T PRK13650          3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK   82 (279)
T ss_pred             ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhh
Confidence            379999999999632  35999999999999999999999999999999999999999999998763           25


Q ss_pred             EEEEeeccCCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 026376           94 IAVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH  167 (239)
Q Consensus        94 ~~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~  167 (239)
                      ++|++|++...+ ...+..+++...  .....    .+++.++++.+++.+ ..++++.+||||||||++|||||+.+|+
T Consensus        83 i~~v~q~~~~~~-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGq~qrv~lAral~~~p~  160 (279)
T PRK13650         83 IGMVFQNPDNQF-VGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQD-FKEREPARLSGGQKQRVAIAGAVAMRPK  160 (279)
T ss_pred             ceEEEcChHHhc-ccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHh-HhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            899999863111 223444443211  11111    345788999999974 5678899999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          168 IILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       168 llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      +|||||||++||+.++..+.+.+.+.    +.|||++|||++++. +||++++|++|+++ ..|+++++.
T Consensus       161 lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~G~i~-~~g~~~~~~  228 (279)
T PRK13650        161 IIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVE-STSTPRELF  228 (279)
T ss_pred             EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEE-EECCHHHHH
Confidence            99999999999999999888877543    579999999999995 79999999999997 578887764

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.2e-48  Score=327.28  Aligned_cols=203  Identities=20%  Similarity=0.283  Sum_probs=166.4

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCceeEEecCc---------
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK---------   91 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~---------   91 (239)
                      +|+|+++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+.+     |++|+|.+++.         
T Consensus         4 ~~~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   82 (253)
T PRK14242          4 PPKMEARGLSFFYG-DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV   82 (253)
T ss_pred             CcEEEEeeeEEEEC-CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence            46899999999995 4569999999999999999999999999999999999964     68999987652         


Q ss_pred             ----eEEEEEeeccCCCCCCCCcHHHHHHH--hCCC-----CcHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 026376           92 ----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG-----VPEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA  157 (239)
Q Consensus        92 ----~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~  157 (239)
                          ..++|++|++.. +.  .+..+++..  ....     ...+++.++++.+++.+   ...++++.+|||||||||+
T Consensus        83 ~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~  159 (253)
T PRK14242         83 VELRRRVGMVFQKPNP-FP--KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLC  159 (253)
T ss_pred             HHHhhcEEEEecCCCC-Cc--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHH
Confidence                248999998632 12  244443321  1111     11345777889888843   2346788999999999999


Q ss_pred             HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          158 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       158 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      |||||+.+|++|||||||++||+.++..+.+.+++.  +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus       160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~  236 (253)
T PRK14242        160 IARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLI-EVGPTEQIF  236 (253)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence            999999999999999999999999999998888754  469999999999999999999999999997 578887764

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=2.7e-48  Score=353.30  Aligned_cols=206  Identities=24%  Similarity=0.360  Sum_probs=176.2

Q ss_pred             CCCeEEEEeeEEEcCC------C----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---
Q 026376           25 GPPIISFSDASFGYPG------G----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---   91 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~------~----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---   91 (239)
                      ..++++++||++.|..      +    ..+++||||++.+||++||+|+||||||||.|+|+|+++|++|+|.+++.   
T Consensus       277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~  356 (539)
T COG1123         277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD  356 (539)
T ss_pred             cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence            4678999999999962      1    35899999999999999999999999999999999999999999998763   


Q ss_pred             ----------eEEEEEeeccCCCCCCCCcHHHHHHHh---CCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHH
Q 026376           92 ----------VRIAVFSQHHVDGLDLSSNPLLYMMRC---FPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKS  154 (239)
Q Consensus        92 ----------~~~~~~~q~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq  154 (239)
                                ..+-++||+++..+++..++...+...   ...    ...+++.++++.+++.....++++++|||||||
T Consensus       357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQ  436 (539)
T COG1123         357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQ  436 (539)
T ss_pred             cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhH
Confidence                      258899999988888777765554321   111    123468889999999977789999999999999


Q ss_pred             HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChh
Q 026376          155 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFH  230 (239)
Q Consensus       155 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~  230 (239)
                      |++|||||+.+|++|++|||||+||+..+..+++.|++    .+.|.||||||+.++..+||||++|++|++++ .|+.+
T Consensus       437 RvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE-~G~~~  515 (539)
T COG1123         437 RVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVE-EGPTE  515 (539)
T ss_pred             HHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEE-eCCHH
Confidence            99999999999999999999999999998888877754    36799999999999999999999999999984 56544


Q ss_pred             H
Q 026376          231 D  231 (239)
Q Consensus       231 ~  231 (239)
                      +
T Consensus       516 ~  516 (539)
T COG1123         516 K  516 (539)
T ss_pred             H
Confidence            3

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=7.4e-50  Score=319.54  Aligned_cols=203  Identities=25%  Similarity=0.370  Sum_probs=170.3

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEE
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI   94 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~   94 (239)
                      ++|.++|+.|+|+ ++.++++|||++++||+++++|||||||||.|.++.|+.+|++|+|.+++.            ..+
T Consensus         3 ~~L~a~~l~K~y~-kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi   81 (243)
T COG1137           3 STLVAENLAKSYK-KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI   81 (243)
T ss_pred             cEEEehhhhHhhC-CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence            4689999999994 567899999999999999999999999999999999999999999998763            469


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHH----hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMR----CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP  166 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~----~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p  166 (239)
                      ||+||++.-+-.+  ++.+++..    ....    ....++.++|+.|.+. ...+++..+||||||+|+.|||||+.+|
T Consensus        82 gYLpQE~SIFr~L--tV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~-hlr~~~a~sLSGGERRR~EIARaLa~~P  158 (243)
T COG1137          82 GYLPQEASIFRKL--TVEDNIMAVLEIREKDLKKAERKEELDALLEEFHIT-HLRDSKAYSLSGGERRRVEIARALAANP  158 (243)
T ss_pred             ccccccchHhhcC--cHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchH-HHhcCcccccccchHHHHHHHHHHhcCC
Confidence            9999997533222  33333321    1111    1233467899999997 4778999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHH---HHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          167 HIILLDEPSNHLDLDAVEA---LIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       167 ~llllDEPt~~LD~~~~~~---l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      +++||||||+|+||.+...   ++..|++.+..|+++.|+..+...+|||.|++.+|++. ++|+++++.+
T Consensus       159 ~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vl-a~G~p~ei~~  228 (243)
T COG1137         159 KFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVL-AEGSPEEIVN  228 (243)
T ss_pred             CEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEE-ecCCHHHHhc
Confidence            9999999999999987655   45566677789999999999999999999999999997 7899998753

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.1e-48  Score=333.81  Aligned_cols=204  Identities=24%  Similarity=0.294  Sum_probs=165.2

Q ss_pred             eEEEEeeEEEcCCCC----ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------
Q 026376           28 IISFSDASFGYPGGP----ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------   91 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------   91 (239)
                      .|+++|++++|++..    .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.            
T Consensus         6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   85 (289)
T PRK13645          6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEV   85 (289)
T ss_pred             eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccH
Confidence            589999999996432    4899999999999999999999999999999999999999999987652            


Q ss_pred             ----eEEEEEeeccCCCCCCCCcHHHHHH--HhCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 026376           92 ----VRIAVFSQHHVDGLDLSSNPLLYMM--RCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI  161 (239)
Q Consensus        92 ----~~~~~~~q~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lara  161 (239)
                          ..++|++|++...+. ..+..+++.  .......    .+++.++++.+++.....++++.+||||||||++||||
T Consensus        86 ~~~~~~i~~v~q~~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lara  164 (289)
T PRK13645         86 KRLRKEIGLVFQFPEYQLF-QETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGI  164 (289)
T ss_pred             HHHhccEEEEEeCcchhhh-hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHH
Confidence                248999998632111 123333332  1111111    23466788999995345678899999999999999999


Q ss_pred             hccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          162 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       162 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      |+.+|++|||||||++||+.++..+.+.+.+.    +.|||+||||++++.++||++++|++|+++ ..|+++++.
T Consensus       165 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  239 (289)
T PRK13645        165 IAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVI-SIGSPFEIF  239 (289)
T ss_pred             HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence            99999999999999999999999887776543    569999999999999999999999999997 568877653

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=2.9e-48  Score=321.76  Aligned_cols=190  Identities=33%  Similarity=0.511  Sum_probs=155.9

Q ss_pred             EEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEEE
Q 026376           30 SFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVF   97 (239)
Q Consensus        30 ~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~~   97 (239)
                      +++|++++|++. +.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.           ..++|+
T Consensus         1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~   80 (211)
T cd03225           1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV   80 (211)
T ss_pred             CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence            368999999541 56899999999999999999999999999999999999999999988763           258999


Q ss_pred             eeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 026376           98 SQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL  171 (239)
Q Consensus        98 ~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llll  171 (239)
                      +|++...+ ...+...++..  .....    ...++.++++.+++.. ..++++.+||||||||++|||||+.+|++|||
T Consensus        81 ~q~~~~~~-~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~laral~~~p~llll  158 (211)
T cd03225          81 FQNPDDQF-FGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEG-LRDRSPFTLSGGQKQRVAIAGVLAMDPDILLL  158 (211)
T ss_pred             ecChhhhc-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHh-hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            99852111 12233333321  11111    1345778999999964 55788999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCe
Q 026376          172 DEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGK  221 (239)
Q Consensus       172 DEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~  221 (239)
                      ||||+|||+.++..+.+.+.++   +.|||++|||++++..+||++++|++|+
T Consensus       159 DEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~  211 (211)
T cd03225         159 DEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK  211 (211)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence            9999999999999988877653   5699999999999999999999999885

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.8e-48  Score=331.36  Aligned_cols=203  Identities=27%  Similarity=0.364  Sum_probs=169.0

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI   94 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~   94 (239)
                      ..+|+++|++++|+ +..+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.           ..+
T Consensus         5 ~~~l~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   83 (265)
T PRK10253          5 VARLRGEQLTLGYG-KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI   83 (265)
T ss_pred             ccEEEEEEEEEEEC-CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence            34799999999995 456999999999999999999999999999999999999999999998763           248


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHh-CC---------CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRC-FP---------GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK  164 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~  164 (239)
                      +|++|++...  ...+...++... ..         .....++.++++.+++.+ ..++++.+||||||||++|||||+.
T Consensus        84 ~~v~q~~~~~--~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Gq~qrv~laral~~  160 (265)
T PRK10253         84 GLLAQNATTP--GDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITH-LADQSVDTLSGGQRQRAWIAMVLAQ  160 (265)
T ss_pred             EEeeccCcCC--CCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHH-HhcCCcccCChHHHHHHHHHHHHhc
Confidence            9999986422  223344433211 00         011345778999999964 5678899999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      +|++|||||||+|||+.++..+.+.|.+.    +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus       161 ~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  232 (265)
T PRK10253        161 ETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIV-AQGAPKEIV  232 (265)
T ss_pred             CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence            99999999999999999999888877543    569999999999999999999999999997 678887764

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.4e-48  Score=331.07  Aligned_cols=202  Identities=24%  Similarity=0.350  Sum_probs=165.6

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIA   95 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~~   95 (239)
                      |++++|++++|+++..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++.            ..++
T Consensus         1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~   80 (274)
T PRK13644          1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG   80 (274)
T ss_pred             CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence            4789999999964456999999999999999999999999999999999999999999987753            2489


Q ss_pred             EEeeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 026376           96 VFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII  169 (239)
Q Consensus        96 ~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ll  169 (239)
                      |++|++...+ ...+..+++..  .....    ..+++.++++.+++.. ..++++.+||||||||++|||||+.+|++|
T Consensus        81 ~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~laral~~~p~ll  158 (274)
T PRK13644         81 IVFQNPETQF-VGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEK-YRHRSPKTLSGGQGQCVALAGILTMEPECL  158 (274)
T ss_pred             EEEEChhhhc-ccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHH-HhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            9999863211 12234443321  11111    1345778899999964 567889999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          170 LLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       170 llDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      ||||||++||+.++..+.+.+++   .+.|||++|||++.+. .||++++|++|+++ +.|+++++.
T Consensus       159 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~  223 (274)
T PRK13644        159 IFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRIIVMDRGKIV-LEGEPENVL  223 (274)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCCEEEEEECCEEE-EECCHHHHh
Confidence            99999999999999988887754   3569999999999995 69999999999997 678877754

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.5e-48  Score=326.97  Aligned_cols=202  Identities=20%  Similarity=0.257  Sum_probs=166.4

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-----CceeEEecCc-----------
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK-----------   91 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~-----------   91 (239)
                      +|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.+++.           
T Consensus         3 ~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~   81 (250)
T PRK14247          3 KIEIRDLKVSFG-QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR   81 (250)
T ss_pred             eEEEEeeEEEEC-CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHh
Confidence            689999999995 45699999999999999999999999999999999999974     7999988763           


Q ss_pred             eEEEEEeeccCCCCCCCCcHHHHHHH--hCCC------CcHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHHH
Q 026376           92 VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG------VPEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFAK  160 (239)
Q Consensus        92 ~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~------~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~lar  160 (239)
                      ..++|++|++...  ...+..+++..  ....      ...+++.++++.+++..   ...++++.+||||||||++|||
T Consensus        82 ~~i~~v~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lar  159 (250)
T PRK14247         82 RRVQMVFQIPNPI--PNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIAR  159 (250)
T ss_pred             ccEEEEeccCccC--CCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHH
Confidence            3589999986422  22344444321  1111      11345678899999853   2356788999999999999999


Q ss_pred             HhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          161 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       161 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      ||+.+|++|||||||++||+.++..+.+.+.+.  +.|||++|||++++..+||++++|++|++. ..|+++++.
T Consensus       160 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  233 (250)
T PRK14247        160 ALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIV-EWGPTREVF  233 (250)
T ss_pred             HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEE-EECCHHHHH
Confidence            999999999999999999999999998888754  469999999999999999999999999996 678887764

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=100.00  E-value=2.1e-47  Score=325.46  Aligned_cols=204  Identities=21%  Similarity=0.295  Sum_probs=166.9

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC----CceeEEecCc---------eEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP----SSGTVFRSAK---------VRI   94 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p----~~G~i~~~~~---------~~~   94 (239)
                      +|+++|++++| + ..+|+|+||+|.+||+++|+|+||||||||+++|+|+++|    ++|+|++++.         ..+
T Consensus         4 ~l~~~~l~~~~-~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i   81 (254)
T PRK10418          4 QIELRNIALQA-A-QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKI   81 (254)
T ss_pred             EEEEeCeEEEe-c-cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceE
Confidence            68999999999 4 4689999999999999999999999999999999999999    9999988763         258


Q ss_pred             EEEeeccCCCCCCCCcHHHHHH---HhC-CCCcHHHHHHHHHhcCCCcc--cccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMM---RCF-PGVPEQKLRAHLGSFGVTGN--LALQPMYTLSGGQKSRVAFAKITFKKPHI  168 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~l~~~~l~~~--~~~~~~~~LSgGqkqrv~laral~~~p~l  168 (239)
                      +|++|++...+....+......   ... .....+++.++++.+++.+.  ..++++.+||||||||++|||||+.+|++
T Consensus        82 ~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~l  161 (254)
T PRK10418         82 ATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPF  161 (254)
T ss_pred             EEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCE
Confidence            9999986322221122222211   111 12234568889999999642  34678899999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          169 ILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       169 lllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |||||||++||+.++..+.+.|++.    +.|||++||+++++..+||++++|++|++. ..|+++++.+
T Consensus       162 LlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~~  230 (254)
T PRK10418        162 IIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIV-EQGDVETLFN  230 (254)
T ss_pred             EEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEE-EecCHHHHhh
Confidence            9999999999999998887777543    569999999999999999999999999997 6788877643

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=100.00  E-value=4.6e-48  Score=332.15  Aligned_cols=200  Identities=22%  Similarity=0.273  Sum_probs=165.2

Q ss_pred             EEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------------eEE
Q 026376           30 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VRI   94 (239)
Q Consensus        30 ~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~~~   94 (239)
                      .++|+++.|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.               ..+
T Consensus        26 ~~~~~~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i  104 (269)
T cd03294          26 SKEEILKKTG-QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI  104 (269)
T ss_pred             hhhhhhhhcC-CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence            5779999994 567899999999999999999999999999999999999999999988652               248


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI  168 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~l  168 (239)
                      +|++|++...  ...+..+++..  .....    ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++
T Consensus       105 ~~v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Gq~qrv~lAral~~~p~i  181 (269)
T cd03294         105 SMVFQSFALL--PHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEG-WEHKYPDELSGGMQQRVGLARALAVDPDI  181 (269)
T ss_pred             EEEecCcccC--CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHh-HhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence            9999986422  22334433321  11111    1345778899999964 56788999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          169 ILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       169 lllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |||||||+|||+.++..+.+.+.+.    +.|||++|||++++..+||++++|++|+++ ..|+++++.+
T Consensus       182 llLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~  250 (269)
T cd03294         182 LLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLV-QVGTPEEILT  250 (269)
T ss_pred             EEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHHh
Confidence            9999999999999999888877543    569999999999999999999999999997 5688777643

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=1.2e-47  Score=359.24  Aligned_cols=211  Identities=29%  Similarity=0.496  Sum_probs=177.8

Q ss_pred             CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCC
Q 026376           25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG  104 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~  104 (239)
                      ++++++++|+++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|++++...++|++|++. .
T Consensus       319 ~~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~-~  396 (552)
T TIGR03719       319 GDKVIEAENLSKGFG-DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRD-A  396 (552)
T ss_pred             CCeEEEEeeEEEEEC-CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCcc-c
Confidence            356899999999995 45799999999999999999999999999999999999999999999866667999999852 1


Q ss_pred             CCCCCcHHHHHHHhCC----CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 026376          105 LDLSSNPLLYMMRCFP----GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL  180 (239)
Q Consensus       105 ~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~  180 (239)
                      +....+...++.....    .....++.++++.+++.....++++.+|||||||||+|||||+.+|++|||||||+|||+
T Consensus       397 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~  476 (552)
T TIGR03719       397 LDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDV  476 (552)
T ss_pred             cCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Confidence            2223345554432111    111334667899999964445788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeC-CeEEeeCCChhHHHHHhh
Q 026376          181 DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSE-GKATPFHGTFHDYKKMLQ  237 (239)
Q Consensus       181 ~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~-G~i~~~~g~~~~~~~~~~  237 (239)
                      .++..+.+.|.++++|||+||||++++..+||++++|++ |++..+.|++++|.+...
T Consensus       477 ~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~~~~  534 (552)
T TIGR03719       477 ETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEEDKK  534 (552)
T ss_pred             HHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHHHHH
Confidence            999999999998877999999999999999999999987 588778999999875543

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=100.00  E-value=5.9e-48  Score=328.40  Aligned_cols=201  Identities=23%  Similarity=0.341  Sum_probs=165.6

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------------
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------------   91 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------------   91 (239)
                      |+++||++.|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.                 
T Consensus         1 i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~   79 (252)
T TIGR03005         1 VRFSDVTKRFG-ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE   79 (252)
T ss_pred             CEEEEEEEEeC-CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence            47899999995 457999999999999999999999999999999999999999999987652                 


Q ss_pred             -------eEEEEEeeccCCCCCCCCcHHHHHHHh---CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHH
Q 026376           92 -------VRIAVFSQHHVDGLDLSSNPLLYMMRC---FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVA  157 (239)
Q Consensus        92 -------~~~~~~~q~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~  157 (239)
                             ..++|++|++...  ...+...++...   ....    ..+.+.++++.+++.+ ..++.+.+|||||+||++
T Consensus        80 ~~~~~~~~~i~~v~q~~~~~--~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~  156 (252)
T TIGR03005        80 KHLRQMRNKIGMVFQSFNLF--PHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLAD-KADHMPAQLSGGQQQRVA  156 (252)
T ss_pred             hHHHHHhhCeEEEecCcccC--CCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-HhhcChhhcCHHHHHHHH
Confidence                   2489999986322  223444333210   1111    2345778899999964 567888999999999999


Q ss_pred             HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          158 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       158 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      |||||+.+|++|||||||++||+.++..+.+.|.+.    +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus       157 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  235 (252)
T TIGR03005       157 IARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV-EQGKPDEIF  235 (252)
T ss_pred             HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence            999999999999999999999999999888777542    569999999999999999999999999997 678887764


Q ss_pred             H
Q 026376          234 K  234 (239)
Q Consensus       234 ~  234 (239)
                      +
T Consensus       236 ~  236 (252)
T TIGR03005       236 R  236 (252)
T ss_pred             c
Confidence            3

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=6.9e-48  Score=357.90  Aligned_cols=203  Identities=24%  Similarity=0.351  Sum_probs=171.2

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eE
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VR   93 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~   93 (239)
                      .++|+++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++.            ..
T Consensus         9 ~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~   87 (510)
T PRK15439          9 PPLLCARSISKQYS-GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG   87 (510)
T ss_pred             CceEEEEeEEEEeC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence            45899999999995 457999999999999999999999999999999999999999999998763            24


Q ss_pred             EEEEeeccCCCCCCCCcHHHHHHHhCC--CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 026376           94 IAVFSQHHVDGLDLSSNPLLYMMRCFP--GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL  171 (239)
Q Consensus        94 ~~~~~q~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llll  171 (239)
                      ++|++|++..  ....+..+++.....  ....+++.++++.+++.. ..++++.+|||||||||+|||||+.+|++|||
T Consensus        88 i~~v~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~aL~~~p~lllL  164 (510)
T PRK15439         88 IYLVPQEPLL--FPNLSVKENILFGLPKRQASMQKMKQLLAALGCQL-DLDSSAGSLEVADRQIVEILRGLMRDSRILIL  164 (510)
T ss_pred             EEEEeccCcc--CCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCc-cccCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            8999998642  223344444432111  122456788999999974 56788999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          172 DEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       172 DEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      ||||+|||+.++.++.+.|++.   +.|||+||||++++..+||++++|++|+++ +.|+++++.
T Consensus       165 DEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  228 (510)
T PRK15439        165 DEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIA-LSGKTADLS  228 (510)
T ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecChHHcC
Confidence            9999999999999988877653   579999999999999999999999999997 678887764

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-47  Score=329.03  Aligned_cols=205  Identities=20%  Similarity=0.258  Sum_probs=166.6

Q ss_pred             CCCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCceeEEecCc-------
Q 026376           24 PGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK-------   91 (239)
Q Consensus        24 ~~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~-------   91 (239)
                      +++++|+++|++++|+ +..+|+++||+|++||+++|+|+||||||||+++|+|+.+     |++|+|.+++.       
T Consensus        17 ~~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~   95 (268)
T PRK14248         17 AKEHILEVKDLSIYYG-EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI   95 (268)
T ss_pred             CCCceEEEEEEEEEeC-CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc
Confidence            4566899999999995 4579999999999999999999999999999999999864     79999987652       


Q ss_pred             ------eEEEEEeeccCCCCCCCCcHHHHHHHh--CCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHH
Q 026376           92 ------VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSR  155 (239)
Q Consensus        92 ------~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqr  155 (239)
                            ..++|++|++... .  .+...++...  ....     ..+.+.++++.+++..   ...++++.+||||||||
T Consensus        96 ~~~~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr  172 (268)
T PRK14248         96 NVVNLRREIGMVFQKPNPF-P--KSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQR  172 (268)
T ss_pred             cHHHHhccEEEEecCCccC-c--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHH
Confidence                  2489999986421 1  2444443211  1111     1234667788888742   23467889999999999


Q ss_pred             HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          156 VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       156 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      ++|||||+.+|++|||||||+|||+.++..+.+.++++  +.|||++|||++++..+||++++|++|+++ +.|+++++.
T Consensus       173 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~  251 (268)
T PRK14248        173 LCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLV-EYDQTEQIF  251 (268)
T ss_pred             HHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence            99999999999999999999999999999988888754  469999999999999999999999999997 568877664

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=100.00  E-value=3.6e-48  Score=321.52  Aligned_cols=190  Identities=22%  Similarity=0.334  Sum_probs=157.8

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------eEEE
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VRIA   95 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~~~   95 (239)
                      ++++|++++|++ ..+|+++||++++|++++|+||||||||||+++|+|+++|++|+|.+++.             ..++
T Consensus         1 l~~~~l~~~~~~-~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~   79 (213)
T cd03262           1 IEIKNLHKSFGD-FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG   79 (213)
T ss_pred             CEEEEEEEEECC-eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence            468999999954 57999999999999999999999999999999999999999999988763             2489


Q ss_pred             EEeeccCCCCCCCCcHHHHHHH---hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376           96 VFSQHHVDGLDLSSNPLLYMMR---CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI  168 (239)
Q Consensus        96 ~~~q~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~l  168 (239)
                      |++|++...  ...+..+++..   .....    ..+++.++++.+++.. ..++++.+||||||||++|||||+.+|++
T Consensus        80 ~~~q~~~~~--~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~l  156 (213)
T cd03262          80 MVFQQFNLF--PHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLAD-KADAYPAQLSGGQQQRVAIARALAMNPKV  156 (213)
T ss_pred             EEecccccC--CCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHh-HhhhCccccCHHHHHHHHHHHHHhcCCCE
Confidence            999986422  22333333321   11111    2345678899999964 46788999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeE
Q 026376          169 ILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKA  222 (239)
Q Consensus       169 lllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i  222 (239)
                      |||||||+|||+.++..+.+.+.+.   +.|||++|||++++.++||++++|++|++
T Consensus       157 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i  213 (213)
T cd03262         157 MLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI  213 (213)
T ss_pred             EEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            9999999999999999888877653   56999999999999999999999999974

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=1.8e-47  Score=358.43  Aligned_cols=211  Identities=29%  Similarity=0.492  Sum_probs=178.0

Q ss_pred             CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCC
Q 026376           25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG  104 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~  104 (239)
                      .+++|+++|+++.|+ ++.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++...++|++|++. .
T Consensus       321 ~~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~-~  398 (556)
T PRK11819        321 GDKVIEAENLSKSFG-DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRD-A  398 (556)
T ss_pred             CCeEEEEEeEEEEEC-CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchh-h
Confidence            356899999999995 45799999999999999999999999999999999999999999999866668999999851 2


Q ss_pred             CCCCCcHHHHHHHhC--C--CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 026376          105 LDLSSNPLLYMMRCF--P--GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL  180 (239)
Q Consensus       105 ~~~~~~~~~~~~~~~--~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~  180 (239)
                      +....++..++....  .  ......+..+++.+++.....++++.+|||||||||+|||||+.+|++|||||||+|||+
T Consensus       399 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~  478 (556)
T PRK11819        399 LDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDV  478 (556)
T ss_pred             cCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence            222334554443211  1  112334567899999964445788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeC-CeEEeeCCChhHHHHHhh
Q 026376          181 DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSE-GKATPFHGTFHDYKKMLQ  237 (239)
Q Consensus       181 ~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~-G~i~~~~g~~~~~~~~~~  237 (239)
                      .++..+.+.|.++.+|||+||||++++..+||++++|++ |++..+.|++++|.+..+
T Consensus       479 ~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~~~  536 (556)
T PRK11819        479 ETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEEDKK  536 (556)
T ss_pred             HHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHHHH
Confidence            999999999998877999999999999999999999986 888778999999976543

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=100.00  E-value=6.2e-48  Score=342.68  Aligned_cols=194  Identities=21%  Similarity=0.271  Sum_probs=161.3

Q ss_pred             EEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------------eEEEEEeec
Q 026376           36 FGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VRIAVFSQH  100 (239)
Q Consensus        36 ~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~~~~~~~q~  100 (239)
                      ++| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++.               ..++|++|+
T Consensus         1 ~~~-~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~   79 (363)
T TIGR01186         1 KKT-GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ   79 (363)
T ss_pred             Ccc-CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence            356 4567999999999999999999999999999999999999999999998762               369999998


Q ss_pred             cCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 026376          101 HVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP  174 (239)
Q Consensus       101 ~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEP  174 (239)
                      +...  ...+..+++..  .....    ..+++.++++.+++.. ..++++.+|||||||||+|||||+.+|++||||||
T Consensus        80 ~~l~--~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~-~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP  156 (363)
T TIGR01186        80 FALF--PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEE-YEHRYPDELSGGMQQRVGLARALAAEPDILLMDEA  156 (363)
T ss_pred             CcCC--CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCch-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            6432  22344444321  11111    2356788999999964 67889999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          175 SNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       175 t~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |++||+.++..+.+.+.+.    +.|||+||||++++..+||+|++|++|+++ ..|+++++..
T Consensus       157 ~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv-~~g~~~ei~~  219 (363)
T TIGR01186       157 FSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIV-QVGTPDEILR  219 (363)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE-eeCCHHHHHh
Confidence            9999999999888776532    679999999999999999999999999997 5788887643

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=100.00  E-value=7.6e-48  Score=329.51  Aligned_cols=201  Identities=21%  Similarity=0.300  Sum_probs=167.6

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCC---ceeEEecCc------------
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS---SGTVFRSAK------------   91 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~~------------   91 (239)
                      ++|+++||++.|+ +..+|+++||+|.+||+++|+||||||||||+++|+|+++|+   +|+|.+++.            
T Consensus         3 ~~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~   81 (262)
T PRK09984          3 TIIRVEKLAKTFN-QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI   81 (262)
T ss_pred             cEEEEeeEEEEeC-CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence            4899999999995 457999999999999999999999999999999999999986   499987762            


Q ss_pred             ----eEEEEEeeccCCCCCCCCcHHHHHHHhC--------------CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHH
Q 026376           92 ----VRIAVFSQHHVDGLDLSSNPLLYMMRCF--------------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK  153 (239)
Q Consensus        92 ----~~~~~~~q~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk  153 (239)
                          ..++|++|++..  ....+...++....              ......++.++++.+++.+ ..++++.+||||||
T Consensus        82 ~~~~~~i~~~~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~  158 (262)
T PRK09984         82 RKSRANTGYIFQQFNL--VNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVH-FAHQRVSTLSGGQQ  158 (262)
T ss_pred             HHHHhheEEEcccccc--ccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHH-HHhCCccccCHHHH
Confidence                147999998632  22234444432110              0112346788999999964 56788999999999


Q ss_pred             HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCCh
Q 026376          154 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTF  229 (239)
Q Consensus       154 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~  229 (239)
                      |||+|||||+.+|++|||||||++||+.++..+.+.|++.    +.|||++|||++++..+||++++|++|++. +.|++
T Consensus       159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~-~~g~~  237 (262)
T PRK09984        159 QRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVF-YDGSS  237 (262)
T ss_pred             HHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCH
Confidence            9999999999999999999999999999999888877653    569999999999999999999999999996 67998


Q ss_pred             hHH
Q 026376          230 HDY  232 (239)
Q Consensus       230 ~~~  232 (239)
                      +++
T Consensus       238 ~~~  240 (262)
T PRK09984        238 QQF  240 (262)
T ss_pred             HHh
Confidence            887

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.9e-47  Score=325.57  Aligned_cols=203  Identities=21%  Similarity=0.238  Sum_probs=166.2

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-----CceeEEecCc---------
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK---------   91 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~---------   91 (239)
                      .++|+++|++++|+ +..+|+|+||+|++||+++|+|+||||||||+++|+|+++|     ++|+|.+++.         
T Consensus         5 ~~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   83 (254)
T PRK14273          5 EAIIETENLNLFYT-DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI   83 (254)
T ss_pred             CceEEEeeeEEEeC-CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence            45899999999995 45699999999999999999999999999999999999997     4899987652         


Q ss_pred             ----eEEEEEeeccCCCCCCCCcHHHHHHH--hCCC-C----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 026376           92 ----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG-V----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA  157 (239)
Q Consensus        92 ----~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~-~----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~  157 (239)
                          ..++|++|++...   ..+..+++..  .... .    ..+.+.++++.+++..   ...++++.+||||||||++
T Consensus        84 ~~~~~~i~~v~q~~~~~---~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~  160 (254)
T PRK14273         84 LELRRKIGMVFQTPNPF---LMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLC  160 (254)
T ss_pred             HHHhhceEEEeeccccc---cCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHH
Confidence                2489999986422   2344444321  1111 1    1345677888888731   2356788999999999999


Q ss_pred             HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          158 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       158 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      |||||+.+|++|||||||++||+.++..+.+.|.++  +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus       161 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  237 (254)
T PRK14273        161 IARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIE-EESSTDELF  237 (254)
T ss_pred             HHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence            999999999999999999999999999988877664  469999999999999999999999999997 578887764

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.3e-48  Score=324.95  Aligned_cols=202  Identities=19%  Similarity=0.283  Sum_probs=165.1

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEE
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI   94 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~   94 (239)
                      ++|+++|++++|+ +..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.            ..+
T Consensus         4 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i   82 (237)
T PRK11614          4 VMLSFDKVSAHYG-KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV   82 (237)
T ss_pred             cEEEEEeEEEeeC-CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence            4799999999995 457999999999999999999999999999999999999999999987763            248


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHh--CCC--CcHHHHHHHHHhc-CCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRC--FPG--VPEQKLRAHLGSF-GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII  169 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~l~~~-~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ll  169 (239)
                      +|++|++...  ...+...++...  ...  .....+.++++.+ ++.+ ..++++.+||||||||++|||||+.+|++|
T Consensus        83 ~~~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~il  159 (237)
T PRK11614         83 AIVPEGRRVF--SRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHE-RRIQRAGTMSGGEQQMLAIGRALMSQPRLL  159 (237)
T ss_pred             EEeccCcccC--CCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHH-HHhCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence            9999986322  223444444321  111  1123456667777 4643 446788999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          170 LLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       170 llDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      ||||||++||+.++..+.+.+.+   .+.|||++|||++++.++||++++|++|+++ +.|+++++.
T Consensus       160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  225 (237)
T PRK11614        160 LLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVV-LEDTGDALL  225 (237)
T ss_pred             EEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEE-eeCCHHHHh
Confidence            99999999999999888777654   3679999999999999999999999999997 678888764

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-47  Score=341.15  Aligned_cols=199  Identities=22%  Similarity=0.282  Sum_probs=165.7

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------------e
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------V   92 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~   92 (239)
                      ||++ ||+++|+ +. .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.               .
T Consensus         1 ~l~~-~l~k~~~-~~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   76 (352)
T PRK11144          1 MLEL-NFKQQLG-DL-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR   76 (352)
T ss_pred             CeEE-EEEEEeC-CE-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence            4788 9999995 43 33 899999999999999999999999999999999999999987652               2


Q ss_pred             EEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376           93 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD  172 (239)
Q Consensus        93 ~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD  172 (239)
                      .++|++|++..  ....+...++.........+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||||
T Consensus        77 ~i~~v~q~~~l--~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qRvalaraL~~~p~llLLD  153 (352)
T PRK11144         77 RIGYVFQDARL--FPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEP-LLDRYPGSLSGGEKQRVAIGRALLTAPELLLMD  153 (352)
T ss_pred             CEEEEcCCccc--CCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCch-hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence            48999998642  223344444432222233567889999999974 567889999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          173 EPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       173 EPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |||++||+.++..+.+.|++.    +.|||+||||++++..+||++++|++|++. ..|+++++..
T Consensus       154 EPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~i~~  218 (352)
T PRK11144        154 EPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVK-AFGPLEEVWA  218 (352)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEE-EecCHHHHHh
Confidence            999999999999888777543    569999999999999999999999999997 5788887654

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-47  Score=329.95  Aligned_cols=202  Identities=23%  Similarity=0.280  Sum_probs=164.0

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------eEEEEEee
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------VRIAVFSQ   99 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------~~~~~~~q   99 (239)
                      +|+++|++++|++++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.        ..++|++|
T Consensus         6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q   85 (272)
T PRK15056          6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQ   85 (272)
T ss_pred             eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecc
Confidence            6999999999964467999999999999999999999999999999999999999999998763        25999999


Q ss_pred             ccCCCCCCCCcHHHHHH----H---hC--C-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 026376          100 HHVDGLDLSSNPLLYMM----R---CF--P-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII  169 (239)
Q Consensus       100 ~~~~~~~~~~~~~~~~~----~---~~--~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ll  169 (239)
                      ++.............+.    .   ..  . ....+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|
T Consensus        86 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qrv~laraL~~~p~ll  164 (272)
T PRK15056         86 SEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVE-FRHRQIGELSGGQKKRVFLARAIAQQGQVI  164 (272)
T ss_pred             ccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChh-HhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            86321111111111110    0   00  0 112345678899999974 457889999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376          170 LLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       170 llDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                      ||||||++||+.++..+.+.|.++   +.|||++|||++++..+||+++++ +|++. ..|+++++
T Consensus       165 llDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~-~~g~~~~~  228 (272)
T PRK15056        165 LLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVL-ASGPTETT  228 (272)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEE-eecCHHhc
Confidence            999999999999999988877653   569999999999999999999877 89986 56887765

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.1e-47  Score=327.54  Aligned_cols=200  Identities=27%  Similarity=0.387  Sum_probs=167.1

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEEE
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVF   97 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~~   97 (239)
                      |+++|+++.|+ +..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.           ..++|+
T Consensus         2 l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~   80 (256)
T TIGR03873         2 LRLSRVSWSAG-GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV   80 (256)
T ss_pred             ceEEeEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence            68999999995 457999999999999999999999999999999999999999999998763           248999


Q ss_pred             eeccCCCCCCCCcHHHHHHHh-------CC---CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 026376           98 SQHHVDGLDLSSNPLLYMMRC-------FP---GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH  167 (239)
Q Consensus        98 ~q~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~  167 (239)
                      +|++..  ....+...++...       ..   ....+++.++++.+++. ...++++.+||||||||++|||||+.+|+
T Consensus        81 ~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~  157 (256)
T TIGR03873        81 EQDSDT--AVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELS-HLADRDMSTLSGGERQRVHVARALAQEPK  157 (256)
T ss_pred             cccCcc--CCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence            998632  2223444443211       00   01234678899999996 45678899999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          168 IILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       168 llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      ++||||||++||+.++..+.+.|.+.   +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus       158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  225 (256)
T TIGR03873       158 LLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVV-AAGPPREVL  225 (256)
T ss_pred             EEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEE-EecCHHHhh
Confidence            99999999999999999888877654   569999999999999999999999999997 678887763

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.7e-47  Score=325.45  Aligned_cols=203  Identities=22%  Similarity=0.268  Sum_probs=165.8

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-----CceeEEecCc---------
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK---------   91 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~---------   91 (239)
                      .++|+++|++++|+ ++.+|+|+||+|.+||+++|+|+||||||||+++|+|+++|     ++|+|.+++.         
T Consensus        10 ~~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   88 (258)
T PRK14268         10 QPQIKVENLNLWYG-EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV   88 (258)
T ss_pred             ceeEEEeeeEEEeC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence            45899999999995 45699999999999999999999999999999999999985     8999987652         


Q ss_pred             ----eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHH
Q 026376           92 ----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAF  158 (239)
Q Consensus        92 ----~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~l  158 (239)
                          ..++|++|++.. +.  .+...++..  ......    ..++.++++.+++..   ...++++.+|||||||||+|
T Consensus        89 ~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~l  165 (258)
T PRK14268         89 VELRKNVGMVFQKPNP-FP--MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCI  165 (258)
T ss_pred             HHHhhhEEEEecCCcc-Cc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHH
Confidence                248999998642 22  344443321  111111    234677899888742   23567889999999999999


Q ss_pred             HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          159 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       159 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      ||||+.+|++|||||||++||+.++..+.+.+++.  +.|||++|||++++..+||++++|++|+++ +.|+++++.
T Consensus       166 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  241 (258)
T PRK14268        166 ARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELI-EFGQTRQIF  241 (258)
T ss_pred             HHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence            99999999999999999999999999988877654  469999999999999999999999999997 568877663

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-47  Score=322.62  Aligned_cols=200  Identities=27%  Similarity=0.391  Sum_probs=166.0

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEe
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS   98 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~   98 (239)
                      ||+++||+++|++ ..  .++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.         ..++|++
T Consensus         1 ~l~~~~l~~~~~~-~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~   77 (232)
T PRK10771          1 MLKLTDITWLYHH-LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLF   77 (232)
T ss_pred             CeEEEEEEEEECC-cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEe
Confidence            4789999999953 32  4999999999999999999999999999999999999999998763         2589999


Q ss_pred             eccCCCCCCCCcHHHHHHHhC-C-----CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376           99 QHHVDGLDLSSNPLLYMMRCF-P-----GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD  172 (239)
Q Consensus        99 q~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD  172 (239)
                      |++..  ....+..+++.... .     ....+++.++++.+++.. ..++++.+||||||||++||||++.+|++||||
T Consensus        78 q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~lllLD  154 (232)
T PRK10771         78 QENNL--FSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIED-LLARLPGQLSGGQRQRVALARCLVREQPILLLD  154 (232)
T ss_pred             ccccc--ccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHH-HHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            98632  22234444442111 1     112346788999999964 567889999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          173 EPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       173 EPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |||++||+.++..+.+.+.+.    +.|||++|||++++..+||++++|++|++. +.|+++++.+
T Consensus       155 EP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~-~~g~~~~~~~  219 (232)
T PRK10771        155 EPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIA-WDGPTDELLS  219 (232)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHh
Confidence            999999999998888777543    569999999999999999999999999997 6788887754

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=100.00  E-value=1.6e-47  Score=328.73  Aligned_cols=204  Identities=22%  Similarity=0.328  Sum_probs=166.2

Q ss_pred             eEEEEeeEEEcCC--------CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------
Q 026376           28 IISFSDASFGYPG--------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------   91 (239)
Q Consensus        28 ~l~~~~l~~~y~~--------~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------   91 (239)
                      +|+++||++.|++        ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.        
T Consensus         3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~   82 (268)
T PRK10419          3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA   82 (268)
T ss_pred             eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence            6999999999963        357999999999999999999999999999999999999999999987763        


Q ss_pred             ------eEEEEEeeccCCCCCCCCcHHHHHH---HhCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHH
Q 026376           92 ------VRIAVFSQHHVDGLDLSSNPLLYMM---RCFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF  158 (239)
Q Consensus        92 ------~~~~~~~q~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~l  158 (239)
                            ..++|++|++...+....+....+.   .....    ....++.++++.+++.....++++.+||||||||++|
T Consensus        83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~l  162 (268)
T PRK10419         83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCL  162 (268)
T ss_pred             HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHH
Confidence                  2589999986322222223333221   11111    1223578899999996445678899999999999999


Q ss_pred             HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376          159 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       159 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                      ||||+.+|++|||||||++||+.++..+.+.+.+.    +.|||++|||++++..+||++++|++|+++ ..|++++.
T Consensus       163 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~-~~g~~~~~  239 (268)
T PRK10419        163 ARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIV-ETQPVGDK  239 (268)
T ss_pred             HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEe-eeCChhhc
Confidence            99999999999999999999999988887766542    569999999999999999999999999997 56776664

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-47  Score=330.73  Aligned_cols=203  Identities=27%  Similarity=0.383  Sum_probs=167.5

Q ss_pred             CeEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376           27 PIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI   94 (239)
Q Consensus        27 ~~l~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~   94 (239)
                      ++|+++||++.|++ .+.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.           ..+
T Consensus         4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i   83 (279)
T PRK13635          4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV   83 (279)
T ss_pred             ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence            47999999999963 346999999999999999999999999999999999999999999998773           258


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI  168 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~l  168 (239)
                      +|++|++... ....+..+++...  .....    .+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++
T Consensus        84 ~~~~q~~~~~-~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LS~G~~qrv~laral~~~p~l  161 (279)
T PRK13635         84 GMVFQNPDNQ-FVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMED-FLNREPHRLSGGQKQRVAIAGVLALQPDI  161 (279)
T ss_pred             EEEEeCHHHh-cccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChh-hhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            9999986211 1223444444211  11111    245788999999974 56788999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          169 ILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       169 lllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      |||||||+|||+.++..+.+.|.+.    +.|||++|||++++. .||++++|++|+++ +.|+++++.
T Consensus       162 llLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~~~  228 (279)
T PRK13635        162 IILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEIL-EEGTPEEIF  228 (279)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEE-EECCHHHHh
Confidence            9999999999999999988877643    569999999999997 59999999999996 678877654

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-47  Score=330.77  Aligned_cols=204  Identities=24%  Similarity=0.337  Sum_probs=167.3

Q ss_pred             CeEEEEeeEEEcCC-----CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------
Q 026376           27 PIISFSDASFGYPG-----GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------   91 (239)
Q Consensus        27 ~~l~~~~l~~~y~~-----~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------   91 (239)
                      ++|+++|++++|++     .+.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++.          
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~   82 (280)
T PRK13633          3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD   82 (280)
T ss_pred             ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence            47999999999963     246999999999999999999999999999999999999999999988752          


Q ss_pred             --eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 026376           92 --VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF  163 (239)
Q Consensus        92 --~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~  163 (239)
                        ..++|++|++...+. ..+...++..  .....    ..+++.++++.+++.+ ..++++.+||||||||++|||||+
T Consensus        83 ~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LS~G~~qrv~laral~  160 (280)
T PRK13633         83 IRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYE-YRRHAPHLLSGGQKQRVAIAGILA  160 (280)
T ss_pred             HhhheEEEecChhhhhc-cccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHh-HhhCCcccCCHHHHHHHHHHHHHH
Confidence              248999998632221 1233333221  11111    1345788999999974 567889999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          164 KKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      .+|++|||||||++||+.++..+.+.+++.    +.|||++|||++++.. ||++++|++|++. ..|+++++..
T Consensus       161 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~-~~g~~~~~~~  233 (280)
T PRK13633        161 MRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVV-MEGTPKEIFK  233 (280)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEE-EecCHHHHhc
Confidence            999999999999999999999988877653    5699999999999986 9999999999997 6788887643

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.9e-47  Score=324.22  Aligned_cols=203  Identities=20%  Similarity=0.213  Sum_probs=165.3

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-----CceeEEecCc----------
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK----------   91 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~----------   91 (239)
                      ++|+++|+++.|+ +..+|+|+||+|.+||+++|+||||||||||+++|+|+++|     ++|+|.+++.          
T Consensus         3 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~   81 (253)
T PRK14267          3 FAIETVNLRVYYG-SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI   81 (253)
T ss_pred             ceEEEEeEEEEeC-CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence            4799999999995 45699999999999999999999999999999999999987     4999987652          


Q ss_pred             ---eEEEEEeeccCCCCCCCCcHHHHHHH--hCCC---C---cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 026376           92 ---VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG---V---PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA  157 (239)
Q Consensus        92 ---~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~---~---~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~  157 (239)
                         ..++|++|++...  ...+...++..  ....   .   ...++.++++.+++..   ...++++.+||||||||++
T Consensus        82 ~~~~~i~~~~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~  159 (253)
T PRK14267         82 EVRREVGMVFQYPNPF--PHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLV  159 (253)
T ss_pred             HHhhceeEEecCCccC--CCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHH
Confidence               2489999986422  22234333321  1111   1   1235677888888742   2356788999999999999


Q ss_pred             HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          158 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       158 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      |||||+.+|++|||||||++||+.++..+.+.|.+.  +.|||++|||++++..+||++++|++|++. ..|+++++.
T Consensus       160 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  236 (253)
T PRK14267        160 IARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLI-EVGPTRKVF  236 (253)
T ss_pred             HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEE-EeCCHHHHH
Confidence            999999999999999999999999999988887654  469999999999999999999999999997 578887764

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=100.00  E-value=6.3e-48  Score=365.67  Aligned_cols=204  Identities=25%  Similarity=0.407  Sum_probs=178.4

Q ss_pred             CeEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376           27 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI   94 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~   94 (239)
                      ..++++|++|+|+.+ ..+|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|.+++.           ..+
T Consensus       470 g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~i  549 (709)
T COG2274         470 GEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQV  549 (709)
T ss_pred             ceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhhe
Confidence            359999999999755 45999999999999999999999999999999999999999999999873           469


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccC----------CCCCCChHHHHHHHHHHHhcc
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ----------PMYTLSGGQKSRVAFAKITFK  164 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgGqkqrv~laral~~  164 (239)
                      +|++|++.   -+..+..+++....+..+.+++.+++...|..++....          ....||||||||++|||||++
T Consensus       550 g~V~Q~~~---Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~  626 (709)
T COG2274         550 GYVLQDPF---LFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLS  626 (709)
T ss_pred             eEEcccch---hhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhcc
Confidence            99999874   23467777776666666678888888888876554433          346799999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGLVLFQ--GGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  235 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  235 (239)
                      +|+|||||||||+||+++.+.+.+.|.+..  +|+|+|||++..+. .||+|++|++|+++ .+|+.+++.+.
T Consensus       627 ~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~-~adrIiVl~~Gkiv-~~gs~~ell~~  697 (709)
T COG2274         627 KPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR-SADRIIVLDQGKIV-EQGSHEELLAQ  697 (709)
T ss_pred             CCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhh-hccEEEEccCCcee-ccCCHHHHHHh
Confidence            999999999999999999999999998874  79999999999987 69999999999997 68999998765

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2e-48  Score=314.30  Aligned_cols=202  Identities=22%  Similarity=0.287  Sum_probs=162.8

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCc-----eeEEecCc---------
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS-----GTVFRSAK---------   91 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~-----G~i~~~~~---------   91 (239)
                      .+.++++||++.| |.+.+|++||++|++++++|++||+|||||||||++..+.....     |+|.+++.         
T Consensus         5 ~~~~~~~~l~~yY-g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~   83 (253)
T COG1117           5 IPAIEVRDLNLYY-GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV   83 (253)
T ss_pred             cceeEecceeEEE-CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence            3568999999999 46789999999999999999999999999999999999987765     89987763         


Q ss_pred             ----eEEEEEeeccCCCCCCCCcHHHHHHH---hCC---CCcHHHHHHHHHhcCCCcc---cccCCCCCCChHHHHHHHH
Q 026376           92 ----VRIAVFSQHHVDGLDLSSNPLLYMMR---CFP---GVPEQKLRAHLGSFGVTGN---LALQPMYTLSGGQKSRVAF  158 (239)
Q Consensus        92 ----~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~l  158 (239)
                          .++|++||.|.++   ..+.++++..   ...   ..-.+.+++.|+...+.++   ..++.+..||||||||++|
T Consensus        84 ~~lRr~vGMVFQkPnPF---p~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcI  160 (253)
T COG1117          84 VELRRRVGMVFQKPNPF---PMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCI  160 (253)
T ss_pred             HHHHHHheeeccCCCCC---CchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHH
Confidence                4699999997432   2445554432   111   1113456677777766433   2456778999999999999


Q ss_pred             HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376          159 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       159 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                      ||||+.+|+|||||||||+|||.+...+.+.+.++  ..|||+|||++..+.+++|+..++..|+++++ |+.+++
T Consensus       161 ARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~-g~T~~i  235 (253)
T COG1117         161 ARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEF-GPTDKI  235 (253)
T ss_pred             HHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEE-cCHHhh
Confidence            99999999999999999999999887777666654  45999999999999999999999999999864 555544

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=2.2e-47  Score=357.52  Aligned_cols=205  Identities=24%  Similarity=0.422  Sum_probs=171.8

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCC
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD  106 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~  106 (239)
                      .+++++|++++|++++.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++...++|++|++.....
T Consensus         3 ~~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~   82 (552)
T TIGR03719         3 YIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPT   82 (552)
T ss_pred             EEEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCC
Confidence            47999999999963457999999999999999999999999999999999999999999998777789999998643221


Q ss_pred             CCCcHHHHHHHh-----------------C--CCC-----------------------cHHHHHHHHHhcCCCcccccCC
Q 026376          107 LSSNPLLYMMRC-----------------F--PGV-----------------------PEQKLRAHLGSFGVTGNLALQP  144 (239)
Q Consensus       107 ~~~~~~~~~~~~-----------------~--~~~-----------------------~~~~~~~~l~~~~l~~~~~~~~  144 (239)
                        .+..+++...                 .  ...                       ...++.++++.+++. . .+++
T Consensus        83 --~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~  158 (552)
T TIGR03719        83 --KTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP-P-WDAD  158 (552)
T ss_pred             --CcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC-c-ccCc
Confidence              2222222100                 0  000                       013455677788884 2 4688


Q ss_pred             CCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEe
Q 026376          145 MYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATP  224 (239)
Q Consensus       145 ~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~  224 (239)
                      +.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|++++.|||+||||++++..+||++++|++|+++.
T Consensus       159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i~~  238 (552)
T TIGR03719       159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIP  238 (552)
T ss_pred             hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999999999887899999999999999999999999999876


Q ss_pred             eCCChhHHHHH
Q 026376          225 FHGTFHDYKKM  235 (239)
Q Consensus       225 ~~g~~~~~~~~  235 (239)
                      +.|++++|.+.
T Consensus       239 ~~g~~~~~~~~  249 (552)
T TIGR03719       239 WEGNYSSWLEQ  249 (552)
T ss_pred             ecCCHHHHHHH
Confidence            88999987654

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.4e-47  Score=325.25  Aligned_cols=203  Identities=21%  Similarity=0.307  Sum_probs=166.3

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCceeEEecCc---------
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK---------   91 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~---------   91 (239)
                      ..+++++|++++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.+++.         
T Consensus        11 ~~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~   89 (260)
T PRK10744         11 PSKIQVRNLNFYYG-KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI   89 (260)
T ss_pred             CceEEEEEEEEEeC-CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence            45799999999995 4579999999999999999999999999999999999986     58999987652         


Q ss_pred             ----eEEEEEeeccCCCCCCCCcHHHHHHH---hCCCCc----HHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 026376           92 ----VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGVP----EQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA  157 (239)
Q Consensus        92 ----~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~  157 (239)
                          ..++|++|++.. +.  .+...++..   ......    .+++.++++.+++..   ...++++.+||||||||++
T Consensus        90 ~~~~~~i~~~~q~~~~-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~  166 (260)
T PRK10744         90 ALLRAKVGMVFQKPTP-FP--MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLC  166 (260)
T ss_pred             HHHhcceEEEecCCcc-Cc--CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHH
Confidence                248999998642 22  344444321   111111    245778899998742   2356788999999999999


Q ss_pred             HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          158 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       158 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      |||||+.+|++|||||||++||+.++..+.+.+++.  +.|||++|||++++..+||++++|++|+++ ..|+.+++.
T Consensus       167 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  243 (260)
T PRK10744        167 IARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELI-EFGNTDTIF  243 (260)
T ss_pred             HHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence            999999999999999999999999999988888754  469999999999999999999999999997 568877764

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=100.00  E-value=2.1e-47  Score=316.72  Aligned_cols=189  Identities=24%  Similarity=0.349  Sum_probs=157.6

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEee
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ   99 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~q   99 (239)
                      ++++|++++|++ ..  .|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.         ..++|++|
T Consensus         1 i~~~~l~~~~~~-~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q   77 (211)
T cd03298           1 VRLDKIRFSYGE-QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQ   77 (211)
T ss_pred             CEEEeEEEEeCC-Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEec
Confidence            468999999953 32  3999999999999999999999999999999999999999998763         25899999


Q ss_pred             ccCCCCCCCCcHHHHHHHhCC---C---CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 026376          100 HHVDGLDLSSNPLLYMMRCFP---G---VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE  173 (239)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDE  173 (239)
                      ++..  ....+..+++.....   .   ...+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||
T Consensus        78 ~~~~--~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDE  154 (211)
T cd03298          78 ENNL--FAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAG-LEKRLPGELSGGERQRVALARVLVRDKPVLLLDE  154 (211)
T ss_pred             cccc--CCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHH-HHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            8642  222344444431110   1   12446788999999974 4578889999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376          174 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       174 Pt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~  223 (239)
                      ||++||+.++..+.+.+++.    +.|||++|||++++..+||++++|++|+++
T Consensus       155 P~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~  208 (211)
T cd03298         155 PFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIA  208 (211)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEe
Confidence            99999999999988877643    569999999999999999999999999986

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-47  Score=362.37  Aligned_cols=206  Identities=20%  Similarity=0.256  Sum_probs=170.0

Q ss_pred             CCeEEEEeeEEEcCC----------CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----
Q 026376           26 PPIISFSDASFGYPG----------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----   91 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~----------~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----   91 (239)
                      .++|+++||++.|+.          ...+|++|||+|.+||+++|+|+||||||||+|+|+|+++|++|+|++++.    
T Consensus       311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~  390 (623)
T PRK10261        311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT  390 (623)
T ss_pred             CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence            468999999999952          136899999999999999999999999999999999999999999998763    


Q ss_pred             ----------eEEEEEeeccCCCCCCCCcHHHHHHH---hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHH
Q 026376           92 ----------VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKS  154 (239)
Q Consensus        92 ----------~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq  154 (239)
                                ..++|++|++...+....+....+..   ....    ...+++.++|+.+++.....++++++|||||||
T Consensus       391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQ  470 (623)
T PRK10261        391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQ  470 (623)
T ss_pred             CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHH
Confidence                      24899999864233333344443321   1111    112467889999999644567899999999999


Q ss_pred             HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChh
Q 026376          155 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFH  230 (239)
Q Consensus       155 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~  230 (239)
                      ||+|||||+.+|++|||||||++||+.++..+++.|++    .+.|||+||||++++..+||++++|++|+++ +.|+++
T Consensus       471 Rv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv-~~g~~~  549 (623)
T PRK10261        471 RICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIV-EIGPRR  549 (623)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecCHH
Confidence            99999999999999999999999999999988887743    3679999999999999999999999999997 567776


Q ss_pred             HH
Q 026376          231 DY  232 (239)
Q Consensus       231 ~~  232 (239)
                      ++
T Consensus       550 ~i  551 (623)
T PRK10261        550 AV  551 (623)
T ss_pred             HH
Confidence            65

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.9e-47  Score=324.53  Aligned_cols=204  Identities=20%  Similarity=0.227  Sum_probs=167.1

Q ss_pred             CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-----CceeEEecCc--------
Q 026376           25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK--------   91 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~--------   91 (239)
                      ..++|+++|+++.|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+++|     ++|+|++++.        
T Consensus        16 ~~~~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~   94 (267)
T PRK14235         16 TEIKMRARDVSVFYG-EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD   94 (267)
T ss_pred             CCceEEEEeEEEEEC-CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence            355899999999995 45799999999999999999999999999999999999975     8999987652        


Q ss_pred             -----eEEEEEeeccCCCCCCCCcHHHHHHH--hCCC------CcHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHH
Q 026376           92 -----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG------VPEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSR  155 (239)
Q Consensus        92 -----~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~------~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqr  155 (239)
                           ..++|++|++... .  .+..+++..  ....      ...+++.++++.+++..   ...++++.+||||||||
T Consensus        95 ~~~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr  171 (267)
T PRK14235         95 VVELRARVGMVFQKPNPF-P--KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQR  171 (267)
T ss_pred             hHHHhhceEEEecCCCCC-C--CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHH
Confidence                 2489999986422 1  244444321  1111      11345678899999853   13467889999999999


Q ss_pred             HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          156 VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       156 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      ++|||||+.+|++|||||||++||+.++..+.+.|++.  +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus       172 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~  250 (267)
T PRK14235        172 LCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLV-EVGDTEKMF  250 (267)
T ss_pred             HHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEE-EeCCHHHHH
Confidence            99999999999999999999999999999988888654  469999999999999999999999999997 578877764

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=3.7e-47  Score=361.00  Aligned_cols=203  Identities=27%  Similarity=0.480  Sum_probs=171.5

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCC
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDL  107 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~  107 (239)
                      +|+++|++++|+ +..+|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++...+++++|.+..... 
T Consensus         3 ~l~i~~ls~~~~-~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~-   80 (635)
T PRK11147          3 LISIHGAWLSFS-DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVE-   80 (635)
T ss_pred             EEEEeeEEEEeC-CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCC-
Confidence            799999999995 467999999999999999999999999999999999999999999998876678888886421110 


Q ss_pred             CCcHHHHH---------------------------------HH------hCC-CCcHHHHHHHHHhcCCCcccccCCCCC
Q 026376          108 SSNPLLYM---------------------------------MR------CFP-GVPEQKLRAHLGSFGVTGNLALQPMYT  147 (239)
Q Consensus       108 ~~~~~~~~---------------------------------~~------~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~  147 (239)
                       .....++                                 ..      ... .....++.++++.+|+.   .++++.+
T Consensus        81 -~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~---~~~~~~~  156 (635)
T PRK11147         81 -GTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD---PDAALSS  156 (635)
T ss_pred             -CCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC---CCCchhh
Confidence             1111100                                 00      000 01235678899999985   2688999


Q ss_pred             CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCC
Q 026376          148 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHG  227 (239)
Q Consensus       148 LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g  227 (239)
                      |||||||||+|||||+.+|+||||||||||||+.++.++.+.|+++++|||+||||++++..+||++++|++|+++.+.|
T Consensus       157 LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g  236 (635)
T PRK11147        157 LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPG  236 (635)
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEecC
Confidence            99999999999999999999999999999999999999999999988899999999999999999999999999987889


Q ss_pred             ChhHHHHHh
Q 026376          228 TFHDYKKML  236 (239)
Q Consensus       228 ~~~~~~~~~  236 (239)
                      +|++|.++.
T Consensus       237 ~~~~~~~~~  245 (635)
T PRK11147        237 NYDQYLLEK  245 (635)
T ss_pred             CHHHHHHHH
Confidence            999987654

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.5e-47  Score=326.37  Aligned_cols=204  Identities=27%  Similarity=0.381  Sum_probs=166.2

Q ss_pred             CCeEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eE
Q 026376           26 PPIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR   93 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~   93 (239)
                      .++++++|+++.|++ ++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.           ..
T Consensus         5 ~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~   84 (271)
T PRK13632          5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK   84 (271)
T ss_pred             ceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence            358999999999952 456999999999999999999999999999999999999999999988652           24


Q ss_pred             EEEEeeccCCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 026376           94 IAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH  167 (239)
Q Consensus        94 ~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~  167 (239)
                      ++|++|++...+ ...+..+++..  ......    ...+.++++.+++.+ ..++++.+||||||||++|||||+.+|+
T Consensus        85 i~~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~laral~~~p~  162 (271)
T PRK13632         85 IGIIFQNPDNQF-IGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMED-YLDKEPQNLSGGQKQRVAIASVLALNPE  162 (271)
T ss_pred             eEEEEeCHHHhc-CcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHH-HhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            899999862111 12244443321  111111    234678899999964 5678899999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          168 IILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       168 llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      +|||||||+|||+.++..+.+.+.+.    +.|||++||+++++. .||++++|++|++. ..|+.+++.
T Consensus       163 lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~  230 (271)
T PRK13632        163 IIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLI-AQGKPKEIL  230 (271)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEE-EecCHHHHh
Confidence            99999999999999999888887653    369999999999986 79999999999997 567777653

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=100.00  E-value=2e-47  Score=320.17  Aligned_cols=198  Identities=20%  Similarity=0.353  Sum_probs=162.0

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI   94 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~   94 (239)
                      +++|+++|+++.|+ ++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.           ..+
T Consensus         5 ~~~i~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   83 (225)
T PRK10247          5 SPLLQLQNVGYLAG-DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV   83 (225)
T ss_pred             CceEEEeccEEeeC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence            45899999999995 457999999999999999999999999999999999999999999988763           258


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHH---hCC-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMR---CFP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL  170 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~lll  170 (239)
                      +|++|++.. +  ..+..+++..   ... .....++.++++.+++.+...++++.+|||||+||++|||||+.+|++||
T Consensus        84 ~~~~q~~~l-~--~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll  160 (225)
T PRK10247         84 SYCAQTPTL-F--GDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLL  160 (225)
T ss_pred             EEEeccccc-c--cccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            999998642 1  1244444321   111 12244677899999996445678899999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEe--CCeEEeeCCChh
Q 026376          171 LDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVS--EGKATPFHGTFH  230 (239)
Q Consensus       171 lDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~--~G~i~~~~g~~~  230 (239)
                      |||||++||+.++..+.+.+.++    +.|||++|||++++. .||++++|+  .|++  .+|+++
T Consensus       161 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~--~~~~~~  223 (225)
T PRK10247        161 LDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEM--QEARYE  223 (225)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchH--hhhhhc
Confidence            99999999999999888777653    569999999999996 699999996  4555  356653

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.1e-47  Score=326.51  Aligned_cols=204  Identities=21%  Similarity=0.317  Sum_probs=169.4

Q ss_pred             eEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC-C----CceeEEecCc--------
Q 026376           28 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-P----SSGTVFRSAK--------   91 (239)
Q Consensus        28 ~l~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-p----~~G~i~~~~~--------   91 (239)
                      +|+++||+..|...   ..+++||||+|++||++||+|+|||||||+.+.|+|+++ |    .+|+|.+++.        
T Consensus         1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~   80 (316)
T COG0444           1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK   80 (316)
T ss_pred             CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence            47899999999542   368999999999999999999999999999999999998 3    5789988764        


Q ss_pred             -------eEEEEEeeccCCCCCCCCcHHHHHH---HhCCC-----CcHHHHHHHHHhcCCCcc--cccCCCCCCChHHHH
Q 026376           92 -------VRIAVFSQHHVDGLDLSSNPLLYMM---RCFPG-----VPEQKLRAHLGSFGVTGN--LALQPMYTLSGGQKS  154 (239)
Q Consensus        92 -------~~~~~~~q~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~l~~~~l~~~--~~~~~~~~LSgGqkq  154 (239)
                             ..++++||++...+++..+.-..+.   .....     ...+++.++|+.+++.+.  ..+.++++|||||||
T Consensus        81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ  160 (316)
T COG0444          81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ  160 (316)
T ss_pred             HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence                   2699999998766665544322221   21111     124578899999999854  567899999999999


Q ss_pred             HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChh
Q 026376          155 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFH  230 (239)
Q Consensus       155 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~  230 (239)
                      ||.||.||+.+|++||.||||++||...+.++++.|++    .+.++|+||||+..+.++||||+||..|+++ ..|+.+
T Consensus       161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV-E~g~~~  239 (316)
T COG0444         161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV-EEGPVE  239 (316)
T ss_pred             HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE-EeCCHH
Confidence            99999999999999999999999999998888777654    3569999999999999999999999999998 567776


Q ss_pred             HH
Q 026376          231 DY  232 (239)
Q Consensus       231 ~~  232 (239)
                      ++
T Consensus       240 ~i  241 (316)
T COG0444         240 EI  241 (316)
T ss_pred             HH
Confidence            54

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-46  Score=325.63  Aligned_cols=205  Identities=20%  Similarity=0.259  Sum_probs=166.8

Q ss_pred             CCCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCceeEEecCc-------
Q 026376           24 PGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK-------   91 (239)
Q Consensus        24 ~~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~-------   91 (239)
                      .++++|+++|++++|+ +..+|+++||+|++||+++|+||||||||||+++|+|+++     |++|+|.+++.       
T Consensus        35 ~~~~~l~i~~l~~~~~-~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~  113 (285)
T PRK14254         35 SGETVIEARDLNVFYG-DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV  113 (285)
T ss_pred             CCCceEEEEEEEEEEC-CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence            3567899999999995 4579999999999999999999999999999999999987     68999987652       


Q ss_pred             ------eEEEEEeeccCCCCCCCCcHHHHHHH---hC--CCCcHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 026376           92 ------VRIAVFSQHHVDGLDLSSNPLLYMMR---CF--PGVPEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA  157 (239)
Q Consensus        92 ------~~~~~~~q~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~  157 (239)
                            ..++|++|++.. +.  .+..+++..   ..  .....+++.++++.+++..   ...++++.+||||||||++
T Consensus       114 ~~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~  190 (285)
T PRK14254        114 DPVALRRRIGMVFQKPNP-FP--KSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLC  190 (285)
T ss_pred             chHhhhccEEEEecCCcc-Cc--CCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHH
Confidence                  248999998632 11  244443321   11  1112346778899998842   2356788999999999999


Q ss_pred             HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEE-EEeCCeEEeeCCChhHHH
Q 026376          158 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELW-VVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       158 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~-~l~~G~i~~~~g~~~~~~  233 (239)
                      |||||+.+|++|||||||++||+.++..+.+.|+++  +.|||++|||++++..+||+++ +|++|+++ ..|+++++.
T Consensus       191 LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~-~~g~~~~~~  268 (285)
T PRK14254        191 IARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELV-EFDDTDKIF  268 (285)
T ss_pred             HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEE-EeCCHHHHH
Confidence            999999999999999999999999999998888765  4699999999999999999975 57999997 568777654

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=100.00  E-value=6.7e-48  Score=304.25  Aligned_cols=200  Identities=24%  Similarity=0.341  Sum_probs=164.9

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEe
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS   98 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~   98 (239)
                      |+.+++|.+.|+. .+  =..+++|..||+++|+|||||||||||++|+|++.|.+|+|++++.         .-++++|
T Consensus         1 ~l~L~~V~~~y~~-~~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlF   77 (231)
T COG3840           1 MLALDDVRFSYGH-LP--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLF   77 (231)
T ss_pred             CccccceEEeeCc-ce--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhh
Confidence            4678999999943 22  3578999999999999999999999999999999999999999874         2488999


Q ss_pred             eccCCCCCCCCcHHHHHHH-hC-----CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376           99 QHHVDGLDLSSNPLLYMMR-CF-----PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD  172 (239)
Q Consensus        99 q~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD  172 (239)
                      |++..+-  ..++..++.. ..     ....+++++.++.++|+.+ ..++.+.+|||||||||||||+|+++-+|||||
T Consensus        78 QEnNLFa--HLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~-~~~RLP~~LSGGqRQRvALARclvR~~PilLLD  154 (231)
T COG3840          78 QENNLFA--HLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAG-FLKRLPGELSGGQRQRVALARCLVREQPILLLD  154 (231)
T ss_pred             hccccch--hhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhh-HhhhCccccCchHHHHHHHHHHHhccCCeEEec
Confidence            9864322  2233333321 11     1235678899999999986 457888999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          173 EPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       173 EPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      ||||+|||.-+.+++..+.+    .+.|++||||.++.+.+++++++++++|+|. +.|+.+++..
T Consensus       155 EPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~-~~g~~~~~~~  219 (231)
T COG3840         155 EPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIA-AQGSTQELLS  219 (231)
T ss_pred             CchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEE-eeccHHHHhc
Confidence            99999999988877665543    3569999999999999999999999999997 7898888754

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=100.00  E-value=6.1e-47  Score=319.22  Aligned_cols=200  Identities=23%  Similarity=0.443  Sum_probs=158.9

Q ss_pred             EEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376           29 ISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV   96 (239)
Q Consensus        29 l~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~   96 (239)
                      ++++|++++|++ +..+|+++||++.+||+++|+||||||||||+++|+|+++|++|+|.+++.           ..++|
T Consensus         1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (237)
T cd03252           1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV   80 (237)
T ss_pred             CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence            478999999953 356899999999999999999999999999999999999999999998763           25899


Q ss_pred             EeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHH---------HHhc--CCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 026376           97 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH---------LGSF--GVTGNLALQPMYTLSGGQKSRVAFAKITFKK  165 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~~--~l~~~~~~~~~~~LSgGqkqrv~laral~~~  165 (239)
                      ++|++.. +  ..+...++...........+.+.         ++.+  ++.. ..++++.+|||||||||+|||||+.+
T Consensus        81 ~~q~~~~-~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~LSgG~~qrv~laral~~~  156 (237)
T cd03252          81 VLQENVL-F--NRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDT-IVGEQGAGLSGGQRQRIAIARALIHN  156 (237)
T ss_pred             EcCCchh-c--cchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccc-hhhcCCCcCCHHHHHHHHHHHHHhhC
Confidence            9998632 2  23444444321111222233333         3333  3332 23567899999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          166 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       166 p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |++|||||||++||+.++..+.+.+.+.  +.|||++|||++++. .||++++|++|+++ +.|+++++..
T Consensus       157 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~-~~~~~~~~~~  225 (237)
T cd03252         157 PRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK-NADRIIVMEKGRIV-EQGSHDELLA  225 (237)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-EEcCHHHHHh
Confidence            9999999999999999999998888654  569999999999996 59999999999997 6788877654

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=100.00  E-value=5.6e-47  Score=317.81  Aligned_cols=203  Identities=22%  Similarity=0.383  Sum_probs=161.3

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV   96 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~   96 (239)
                      .|+++|++++|++.+.+++|+||++++|++++|+||||||||||+++|+|+++|++|+|.+++.           ..++|
T Consensus         2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   81 (229)
T cd03254           2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV   81 (229)
T ss_pred             eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence            3789999999964346899999999999999999999999999999999999999999998762           24899


Q ss_pred             EeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCc----------ccccCCCCCCChHHHHHHHHHHHhccCC
Q 026376           97 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG----------NLALQPMYTLSGGQKSRVAFAKITFKKP  166 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkqrv~laral~~~p  166 (239)
                      ++|++..   +..+...++..........++.++++.+++..          ...++++.+|||||||||+|||||+.+|
T Consensus        82 ~~q~~~~---~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p  158 (229)
T cd03254          82 VLQDTFL---FSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP  158 (229)
T ss_pred             ecCCchh---hhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence            9998632   11244444432211122334444444444321          1234567899999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376          167 HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  235 (239)
Q Consensus       167 ~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  235 (239)
                      ++|||||||++||+.++..+.+.+.+.  +.|||++||+++++. .||++++|++|++. +.|+++++...
T Consensus       159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~i~~l~~g~~~-~~~~~~~~~~~  227 (229)
T cd03254         159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIK-NADKILVLDDGKII-EEGTHDELLAK  227 (229)
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHh-hCCEEEEEeCCeEE-EeCCHHHHHhh
Confidence            999999999999999999988888764  469999999999987 59999999999997 67888877643

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1e-46  Score=322.08  Aligned_cols=205  Identities=19%  Similarity=0.262  Sum_probs=166.8

Q ss_pred             CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC--C---CceeEEecCc--------
Q 026376           25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ--P---SSGTVFRSAK--------   91 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~--p---~~G~i~~~~~--------   91 (239)
                      .+++|+++|+++.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++  |   ++|+|.+++.        
T Consensus         9 ~~~~l~i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~   87 (259)
T PRK14274          9 KQEVYQINGMNLWYG-QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD   87 (259)
T ss_pred             CCceEEEeeEEEEEC-CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccC
Confidence            456899999999995 4569999999999999999999999999999999999987  3   6999987653        


Q ss_pred             -----eEEEEEeeccCCCCCCCCcHHHHHHH--hCCC-Cc----HHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHH
Q 026376           92 -----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG-VP----EQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRV  156 (239)
Q Consensus        92 -----~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~-~~----~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv  156 (239)
                           ..++|++|++... .  .+...++..  .... ..    .+++.++++.+++.+   ...++++.+||||||||+
T Consensus        88 ~~~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv  164 (259)
T PRK14274         88 LVELRKNIGMVFQKGNPF-P--QSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRL  164 (259)
T ss_pred             HHHHhhceEEEecCCccc-c--cCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHH
Confidence                 2489999986422 1  244443321  1111 11    234667888888742   234678899999999999


Q ss_pred             HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          157 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       157 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      +|||||+.+|++|||||||++||+.++..+.+.+.+.  +.|||+||||++++.++||++++|++|+++ ..|+++++.+
T Consensus       165 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~  243 (259)
T PRK14274        165 CIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELV-ECNDTNKMFS  243 (259)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEE-EECCHHHHhh
Confidence            9999999999999999999999999999988887664  469999999999999999999999999997 6788887643

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.9e-47  Score=320.80  Aligned_cols=201  Identities=21%  Similarity=0.236  Sum_probs=165.7

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC---CCceeEEecCc-----------eE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ---PSSGTVFRSAK-----------VR   93 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~~-----------~~   93 (239)
                      +++++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++   |++|+|.+++.           ..
T Consensus         2 ~~~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~   80 (246)
T PRK14269          2 IAKTTNLNLFYG-KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN   80 (246)
T ss_pred             ceeeeeeEEEEC-CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence            689999999995 4579999999999999999999999999999999999974   79999998763           24


Q ss_pred             EEEEeeccCCCCCCCCcHHHHHHHh--CCC------CcHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHHHHh
Q 026376           94 IAVFSQHHVDGLDLSSNPLLYMMRC--FPG------VPEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFAKIT  162 (239)
Q Consensus        94 ~~~~~q~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~laral  162 (239)
                      ++|++|++... .  .+..+++...  ...      ....++.++++.+++..   ...++++.+||||||||++|||||
T Consensus        81 i~~~~q~~~l~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral  157 (246)
T PRK14269         81 VGMVFQQPNVF-V--KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARAL  157 (246)
T ss_pred             EEEEecCCccc-c--ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHH
Confidence            89999986422 2  3444444211  111      12235678899999853   234677899999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          163 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       163 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      +.+|++|||||||++||+.++..+.+.+.+.  +.|||++|||++++..+||++++|++|+++ ..|+.+++.
T Consensus       158 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  229 (246)
T PRK14269        158 AIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELI-EFGESKEFF  229 (246)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEE-EECCHHHHH
Confidence            9999999999999999999999998888653  669999999999999999999999999997 567777654

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.6e-47  Score=323.96  Aligned_cols=204  Identities=28%  Similarity=0.351  Sum_probs=166.1

Q ss_pred             CCeEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eE
Q 026376           26 PPIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR   93 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~   93 (239)
                      .++|+++|++++|++. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++.           ..
T Consensus         5 ~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~   84 (269)
T PRK13648          5 NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH   84 (269)
T ss_pred             CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence            4589999999999643 35899999999999999999999999999999999999999999998763           24


Q ss_pred             EEEEeeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 026376           94 IAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH  167 (239)
Q Consensus        94 ~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~  167 (239)
                      ++|++|++...+ ...+...++..  .....    ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|+
T Consensus        85 i~~v~q~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~laral~~~p~  162 (269)
T PRK13648         85 IGIVFQNPDNQF-VGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLE-RADYEPNALSGGQKQRVAIAGVLALNPS  162 (269)
T ss_pred             eeEEEeChHHhc-ccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCch-hhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            899999863111 11222222211  11111    1245678899999974 5678889999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          168 IILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       168 llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      +|||||||++||+.++..+.+.+++.    +.|||++||+++++.. ||++++|++|++. +.|+++++.
T Consensus       163 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~~~  230 (269)
T PRK13648        163 VIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVY-KEGTPTEIF  230 (269)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEE-EecCHHHHh
Confidence            99999999999999999888877643    5699999999999985 9999999999997 578887764

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.6e-47  Score=321.20  Aligned_cols=202  Identities=20%  Similarity=0.268  Sum_probs=164.8

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC---cCC--CceeEEecCc----------
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE---LQP--SSGTVFRSAK----------   91 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl---~~p--~~G~i~~~~~----------   91 (239)
                      ++|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+   .+|  ++|+|.+++.          
T Consensus         2 ~~l~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~   80 (250)
T PRK14245          2 VKIDARDVNFWYG-DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD   80 (250)
T ss_pred             cEEEEEEEEEEEC-CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence            5799999999995 45699999999999999999999999999999999997   455  5899987652          


Q ss_pred             ---eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHH
Q 026376           92 ---VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAF  158 (239)
Q Consensus        92 ---~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~l  158 (239)
                         ..++|++|++... .  .+...++..  .....     ..+.+.++++.+++.+   ...++++.+||||||||++|
T Consensus        81 ~~~~~i~~v~q~~~~~-~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l  157 (250)
T PRK14245         81 ELRKNVGMVFQRPNPF-P--KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCI  157 (250)
T ss_pred             HHhhheEEEecCCccC-c--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHH
Confidence               2489999986321 1  244443321  11111     2245678889898853   23467889999999999999


Q ss_pred             HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          159 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       159 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      ||||+.+|++|||||||+|||+.++..+.+.|++.  +.|||+||||++++..+||++++|++|+++ ..|+++++.
T Consensus       158 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~-~~~~~~~~~  233 (250)
T PRK14245        158 ARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMV-EYDDTKKIF  233 (250)
T ss_pred             HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEE-EECCHHHHh
Confidence            99999999999999999999999999998888754  469999999999999999999999999997 678887764

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-46  Score=323.05  Aligned_cols=205  Identities=21%  Similarity=0.250  Sum_probs=165.4

Q ss_pred             CCCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCceeEEecCc-------
Q 026376           24 PGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK-------   91 (239)
Q Consensus        24 ~~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~-------   91 (239)
                      +++++|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.+++.       
T Consensus         9 ~~~~~l~i~nl~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~   87 (269)
T PRK14259          9 SKNIIISLQNVTISYG-TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV   87 (269)
T ss_pred             CCCceEEEEeEEEEEC-CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence            3456899999999995 4569999999999999999999999999999999999987     69999987653       


Q ss_pred             ------eEEEEEeeccCCCCCCCCcHHHHHHHh--CCCC---cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 026376           92 ------VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV---PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA  157 (239)
Q Consensus        92 ------~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~  157 (239)
                            ..++|++|++.. +.  .+..+++...  ....   ..+++.++++.+++..   ...++++.+||||||||++
T Consensus        88 ~~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~  164 (269)
T PRK14259         88 DPVEVRRRIGMVFQQPNP-FP--KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLC  164 (269)
T ss_pred             CHHHHhhceEEEccCCcc-ch--hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHH
Confidence                  248999998632 11  2444443211  1111   1345667788887632   2356788999999999999


Q ss_pred             HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeC-----------CeEEe
Q 026376          158 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSE-----------GKATP  224 (239)
Q Consensus       158 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~-----------G~i~~  224 (239)
                      |||||+.+|++|||||||++||+.++..+.+.|.+.  +.|||++|||++++..+||++++|++           |+++ 
T Consensus       165 laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~-  243 (269)
T PRK14259        165 IARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLV-  243 (269)
T ss_pred             HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEE-
Confidence            999999999999999999999999999988888754  46999999999999999999999996           4565 


Q ss_pred             eCCChhHHH
Q 026376          225 FHGTFHDYK  233 (239)
Q Consensus       225 ~~g~~~~~~  233 (239)
                      ..|+++++.
T Consensus       244 ~~~~~~~~~  252 (269)
T PRK14259        244 EFNETKKIF  252 (269)
T ss_pred             EeCCHHHHH
Confidence            568887764

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-46  Score=320.08  Aligned_cols=203  Identities=20%  Similarity=0.230  Sum_probs=165.8

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-----CceeEEecCc---------
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK---------   91 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~---------   91 (239)
                      +++|+++|++++|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+.+|     ++|+|.+++.         
T Consensus         2 ~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~   80 (251)
T PRK14270          2 KIKMESKNLNLWYG-EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV   80 (251)
T ss_pred             ccEEEEEEeEEEEC-CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence            46899999999995 45699999999999999999999999999999999999875     7999987652         


Q ss_pred             ----eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 026376           92 ----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA  157 (239)
Q Consensus        92 ----~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~  157 (239)
                          ..++|++|++.. +.  .+..+++..  .....     ...++.++++.+++.+   ...++++.+||||||||++
T Consensus        81 ~~~~~~i~~~~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~  157 (251)
T PRK14270         81 VELRKRVGMVFQKPNP-FP--MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLC  157 (251)
T ss_pred             HHHHhheEEEecCCCc-CC--CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHH
Confidence                248999998642 22  344443321  11111     1245667889988742   2356788999999999999


Q ss_pred             HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          158 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       158 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      |||||+.+|++|||||||+|||+.++..+.+.|+++  +.|||+||||++++..+||++++|++|+++ ..|+++++.
T Consensus       158 laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~  234 (251)
T PRK14270        158 IARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLI-EFNKTEKIF  234 (251)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEE-EeCCHHHHh
Confidence            999999999999999999999999999988887654  469999999999999999999999999997 567777653

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=3.8e-47  Score=310.83  Aligned_cols=205  Identities=23%  Similarity=0.353  Sum_probs=169.5

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEE
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI   94 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~   94 (239)
                      ++|+++||+..|+ ...+|++|||++++||+++|+|+||+|||||||+|+|+.+|.+|+|.+++.            ..+
T Consensus         2 ~mL~v~~l~~~YG-~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi   80 (237)
T COG0410           2 PMLEVENLSAGYG-KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI   80 (237)
T ss_pred             CceeEEeEeeccc-ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence            5899999999994 578999999999999999999999999999999999999999999998874            369


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHh-C--CC-Cc-HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRC-F--PG-VP-EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII  169 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~-~--~~-~~-~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ll  169 (239)
                      +|+||....+  ...++.+++... +  +. .. ...++++.+.|-.-.+..+++.++|||||||.+||||||+.+|++|
T Consensus        81 ~~VPegR~iF--~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklL  158 (237)
T COG0410          81 AYVPEGRRIF--PRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLL  158 (237)
T ss_pred             EeCcccccch--hhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEE
Confidence            9999975322  334455554321 1  11 11 1126667777754445678899999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376          170 LLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  235 (239)
Q Consensus       170 llDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  235 (239)
                      ||||||.||-|.-.+++.+.+++.    +.||++|.++..++.+++||.++|++|+++ +.|+.+++.+.
T Consensus       159 LLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv-~~G~~~eL~~~  227 (237)
T COG0410         159 LLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIV-LSGTAAELLAD  227 (237)
T ss_pred             EecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEE-EecCHHHHhcC
Confidence            999999999999888887766543    349999999999999999999999999997 88999887643

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=100.00  E-value=1.4e-46  Score=316.32  Aligned_cols=200  Identities=26%  Similarity=0.346  Sum_probs=165.7

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEee
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ   99 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~q   99 (239)
                      |.++|++++|+ ++.+|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+++.         ..++|++|
T Consensus         1 l~~~~l~~~~~-~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q   79 (232)
T cd03300           1 IELENVSKFYG-GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQ   79 (232)
T ss_pred             CEEEeEEEEeC-CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEec
Confidence            46899999995 457999999999999999999999999999999999999999999988763         35899999


Q ss_pred             ccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 026376          100 HHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE  173 (239)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDE  173 (239)
                      ++....  ..+...++..  .....    ...++.++++.+++.+ ..++.+.+||+||+||++|||||+.+|+++||||
T Consensus        80 ~~~~~~--~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~lS~G~~qrl~laral~~~p~llllDE  156 (232)
T cd03300          80 NYALFP--HLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEG-YANRKPSQLSGGQQQRVAIARALVNEPKVLLLDE  156 (232)
T ss_pred             ccccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            864221  2233333321  11111    2346678899999974 5678889999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          174 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       174 Pt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      ||++||+.++..+.+.+.++    +.|||++||+++++..+||++++|++|++. +.|+.+++.
T Consensus       157 P~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~-~~~~~~~~~  219 (232)
T cd03300         157 PLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQ-QIGTPEEIY  219 (232)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-ecCCHHHHH
Confidence            99999999999988777543    579999999999999999999999999997 567776654

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-46  Score=320.88  Aligned_cols=202  Identities=20%  Similarity=0.211  Sum_probs=164.2

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-----CceeEEecCc-----------
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK-----------   91 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~-----------   91 (239)
                      +++++|++++|++ ..+|+++||+|++||+++|+||||||||||+++|+|+++|     ++|+|.+++.           
T Consensus         4 ~l~i~~v~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~   82 (258)
T PRK14241          4 RIDVKDLNIYYGS-FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA   82 (258)
T ss_pred             cEEEeeEEEEECC-EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHH
Confidence            6899999999954 5699999999999999999999999999999999999974     7999988652           


Q ss_pred             --eEEEEEeeccCCCCCCCCcHHHHHHH---hCCC----CcHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHH
Q 026376           92 --VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPG----VPEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFA  159 (239)
Q Consensus        92 --~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~la  159 (239)
                        ..++|++|++...  ...+...++..   ....    ...+.+.++++.+++..   ...++++.+|||||||||+||
T Consensus        83 ~~~~i~~~~q~~~~~--~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la  160 (258)
T PRK14241         83 VRRTIGMVFQRPNPF--PTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIA  160 (258)
T ss_pred             HhcceEEEccccccC--CCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence              2489999985322  22344444321   1111    11235677888888742   245678899999999999999


Q ss_pred             HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEe------CCeEEeeCCChhH
Q 026376          160 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVS------EGKATPFHGTFHD  231 (239)
Q Consensus       160 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~------~G~i~~~~g~~~~  231 (239)
                      |||+.+|++|||||||++||+.++..+.+.+.+.  +.|||++|||++++..+||++++|+      +|+++ +.|++++
T Consensus       161 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~-~~~~~~~  239 (258)
T PRK14241        161 RAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLV-EIDDTEK  239 (258)
T ss_pred             HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEE-ecCCHHH
Confidence            9999999999999999999999999988877654  4699999999999999999999997      79997 6788877


Q ss_pred             HH
Q 026376          232 YK  233 (239)
Q Consensus       232 ~~  233 (239)
                      +.
T Consensus       240 ~~  241 (258)
T PRK14241        240 IF  241 (258)
T ss_pred             HH
Confidence            64

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=9.1e-48  Score=315.87  Aligned_cols=204  Identities=24%  Similarity=0.429  Sum_probs=174.4

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------eEEEEEee
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------VRIAVFSQ   99 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------~~~~~~~q   99 (239)
                      ++|++++|+++| +++.+++|+||++++|++.+++|||||||||.+|+|.|++.|++|+|.+++.       .+|||+|.
T Consensus         1 ~~L~ie~vtK~F-g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPE   79 (300)
T COG4152           1 MALEIEGVTKSF-GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPE   79 (300)
T ss_pred             CceEEecchhcc-CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChh
Confidence            368999999999 5678999999999999999999999999999999999999999999999884       47999998


Q ss_pred             ccCCCCCCCCcHHH---HHHHhCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376          100 HHVDGLDLSSNPLL---YMMRCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD  172 (239)
Q Consensus       100 ~~~~~~~~~~~~~~---~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD  172 (239)
                      +.-  +....++.+   +++.. .+.+    ..++..+|+++++.+ ...+++.+||-|++|++.+..+++++|+++|||
T Consensus        80 ERG--Ly~k~tv~dql~yla~L-kGm~~~e~~~~~~~wLer~~i~~-~~~~kIk~LSKGnqQKIQfisaviHePeLlILD  155 (300)
T COG4152          80 ERG--LYPKMTVEDQLKYLAEL-KGMPKAEIQKKLQAWLERLEIVG-KKTKKIKELSKGNQQKIQFISAVIHEPELLILD  155 (300)
T ss_pred             hhc--cCccCcHHHHHHHHHHh-cCCcHHHHHHHHHHHHHhccccc-cccchHHHhhhhhhHHHHHHHHHhcCCCEEEec
Confidence            863  333344433   33332 2333    356778999999985 457889999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHH---hhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHHh
Q 026376          173 EPSNHLDLDAVEALIQGL---VLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKML  236 (239)
Q Consensus       173 EPt~~LD~~~~~~l~~~l---~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~  236 (239)
                      ||||||||-+.+.+.+.+   ++.|.|||++||.++.++++||++++|++|+.+ ..|+.+++++..
T Consensus       156 EPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V-~~G~v~~ir~~~  221 (300)
T COG4152         156 EPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTV-LYGTVEDIRRSF  221 (300)
T ss_pred             CCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceE-EeccHHHHHHhc
Confidence            999999999988776655   456789999999999999999999999999987 789999987743

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.7e-47  Score=359.46  Aligned_cols=208  Identities=19%  Similarity=0.301  Sum_probs=168.5

Q ss_pred             CCCeEEEEeeEEEcCC---CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------
Q 026376           25 GPPIISFSDASFGYPG---GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------   91 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~---~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------   91 (239)
                      .+++|+++|+++.|++   ...+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.          
T Consensus         9 ~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~   88 (623)
T PRK10261          9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVI   88 (623)
T ss_pred             CCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccc
Confidence            4568999999999953   236999999999999999999999999999999999999999999976541          


Q ss_pred             ---------------eEEEEEeeccCCCCCCCCcHHHHHHH---hCCCC----cHHHHHHHHHhcCCCc--ccccCCCCC
Q 026376           92 ---------------VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGV----PEQKLRAHLGSFGVTG--NLALQPMYT  147 (239)
Q Consensus        92 ---------------~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~l~~~~l~~--~~~~~~~~~  147 (239)
                                     ..++|++|++...+....++..++..   .....    ..+++.++++.+|+.+  ...++++.+
T Consensus        89 ~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~  168 (623)
T PRK10261         89 ELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQ  168 (623)
T ss_pred             ccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCcc
Confidence                           24899999863222222344333321   11111    1346778999999953  245788999


Q ss_pred             CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376          148 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       148 LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~  223 (239)
                      |||||||||+|||||+.+|++|||||||++||+.++..+.+.+++    .+.|||+||||++++.++||+|++|++|+++
T Consensus       169 LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~  248 (623)
T PRK10261        169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV  248 (623)
T ss_pred             CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeec
Confidence            999999999999999999999999999999999998887776654    2679999999999999999999999999997


Q ss_pred             eeCCChhHHH
Q 026376          224 PFHGTFHDYK  233 (239)
Q Consensus       224 ~~~g~~~~~~  233 (239)
                       ..|+++++.
T Consensus       249 -~~g~~~~~~  257 (623)
T PRK10261        249 -ETGSVEQIF  257 (623)
T ss_pred             -ccCCHHHhh
Confidence             578887764

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.5e-47  Score=354.19  Aligned_cols=201  Identities=22%  Similarity=0.247  Sum_probs=167.9

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEE
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI   94 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~   94 (239)
                      ++|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.            ..+
T Consensus         4 ~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i   82 (510)
T PRK09700          4 PYISMAGIGKSFG-PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI   82 (510)
T ss_pred             ceEEEeeeEEEcC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence            5899999999995 457999999999999999999999999999999999999999999988752            248


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHh------CCC-------CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRC------FPG-------VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI  161 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~------~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lara  161 (239)
                      +|++|++...  ...+..+++...      ...       ...+++.++++.+++.+ ..++++.+|||||||||+||||
T Consensus        83 ~~v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgG~~qrv~ia~a  159 (510)
T PRK09700         83 GIIYQELSVI--DELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV-DLDEKVANLSISHKQMLEIAKT  159 (510)
T ss_pred             EEEeeccccc--CCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCC-CcccchhhCCHHHHHHHHHHHH
Confidence            9999986322  222344433211      001       01245778999999974 5678999999999999999999


Q ss_pred             hccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376          162 TFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       162 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                      |+.+|++|||||||+|||+.++..+.+.+++   .+.|||+||||++++..+||++++|++|+++ +.|+++++
T Consensus       160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~  232 (510)
T PRK09700        160 LMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSV-CSGMVSDV  232 (510)
T ss_pred             HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEe-eecchhhC
Confidence            9999999999999999999999988877754   3579999999999999999999999999996 67887765

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.7e-46  Score=319.05  Aligned_cols=202  Identities=22%  Similarity=0.253  Sum_probs=165.2

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-----CceeEEecCc-----------
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK-----------   91 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~-----------   91 (239)
                      +|+++|+++.|+ +..+|+++||+|++||+++|+||||||||||+++|+|+++|     ++|+|.+++.           
T Consensus         3 ~l~~~~l~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~   81 (250)
T PRK14262          3 IIEIENFSAYYG-EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTE   81 (250)
T ss_pred             eEEEEeeEEEeC-CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHH
Confidence            799999999995 45799999999999999999999999999999999999884     8999987652           


Q ss_pred             --eEEEEEeeccCCCCCCCCcHHHHHHH--hCCC-C----cHHHHHHHHHhcCCCcc---cccCCCCCCChHHHHHHHHH
Q 026376           92 --VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG-V----PEQKLRAHLGSFGVTGN---LALQPMYTLSGGQKSRVAFA  159 (239)
Q Consensus        92 --~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~-~----~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~la  159 (239)
                        ..++|++|++... .  .+...++..  .... .    ..+.+.++++.+++...   ..++++.+||||||||++||
T Consensus        82 ~~~~i~~~~q~~~~~-~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la  158 (250)
T PRK14262         82 YRKKVGMVFQKPTPF-P--MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIA  158 (250)
T ss_pred             hhhhEEEEecCCccC-c--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHH
Confidence              2489999986421 2  344443321  1111 1    12346678888887532   35678899999999999999


Q ss_pred             HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          160 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       160 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |||+.+|++|||||||++||+.++..+.+.+.+.  +.|||++|||++++..+||++++|++|+++ ..|+++++.+
T Consensus       159 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~  234 (250)
T PRK14262        159 RALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELI-EYGPTREIVE  234 (250)
T ss_pred             HHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecCHHHHHh
Confidence            9999999999999999999999999988887654  469999999999999999999999999997 5788877643

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=2.3e-47  Score=353.78  Aligned_cols=201  Identities=20%  Similarity=0.260  Sum_probs=166.5

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEE
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI   94 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~   94 (239)
                      ++|+++|++++|+ ++.+|+|+||+|.+||+++|+||||||||||+|+|+|+++|++|+|.+++.            ..+
T Consensus         3 ~~i~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i   81 (501)
T PRK10762          3 ALLQLKGIDKAFP-GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI   81 (501)
T ss_pred             ceEEEeeeEEEeC-CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence            4799999999995 457999999999999999999999999999999999999999999988752            248


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHh--C----CCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRC--F----PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK  164 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~--~----~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~  164 (239)
                      +|++|++..  ....+..+++...  .    ...    ..+++.++++.+++.+ ..++++.+|||||||||+|||||+.
T Consensus        82 ~~v~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~  158 (501)
T PRK10762         82 GIIHQELNL--IPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRF-SSDKLVGELSIGEQQMVEIAKVLSF  158 (501)
T ss_pred             EEEEcchhc--cCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCC-CccCchhhCCHHHHHHHHHHHHHhc
Confidence            999998632  2223444443211  0    011    1245778999999974 4678899999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                      +|++|||||||++||+.++..+.+.+.+   .+.|||+||||++++..+||++++|++|+++ ..|+++++
T Consensus       159 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~-~~~~~~~~  228 (501)
T PRK10762        159 ESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFI-AEREVADL  228 (501)
T ss_pred             CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE-EecCcCcC
Confidence            9999999999999999999988776654   3569999999999999999999999999996 56666543

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=1.1e-46  Score=313.29  Aligned_cols=191  Identities=24%  Similarity=0.348  Sum_probs=158.9

Q ss_pred             CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce--------EEEE
Q 026376           25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--------RIAV   96 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~--------~~~~   96 (239)
                      ++++|+++|++++|+ ++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++..        .++|
T Consensus         8 ~~~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~   86 (214)
T PRK13543          8 APPLLAAHALAFSRN-EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAY   86 (214)
T ss_pred             CcceEEEeeEEEecC-CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEE
Confidence            456899999999995 4569999999999999999999999999999999999999999999987632        4899


Q ss_pred             EeeccCCCCCCCCcHHHHHH---HhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 026376           97 FSQHHVDGLDLSSNPLLYMM---RCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE  173 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDE  173 (239)
                      ++|++..  ....+..+++.   ........+.+.++++.+++.+ ..++++.+||||||||++||||++.+|++|||||
T Consensus        87 ~~q~~~~--~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDE  163 (214)
T PRK13543         87 LGHLPGL--KADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAG-YEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDE  163 (214)
T ss_pred             eecCccc--ccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChh-hccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            9987532  22223443332   1111123456678899999974 4678899999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeC
Q 026376          174 PSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSE  219 (239)
Q Consensus       174 Pt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~  219 (239)
                      ||++||+.++..+.+.+.+.   +.|||++|||.+++.++||++++++.
T Consensus       164 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~  212 (214)
T PRK13543        164 PYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA  212 (214)
T ss_pred             CcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence            99999999999888877643   67999999999999999999999864

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=6.2e-47  Score=352.36  Aligned_cols=209  Identities=25%  Similarity=0.362  Sum_probs=171.6

Q ss_pred             CCCeEEEEeeEEEcCC----CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEec-Cc--------
Q 026376           25 GPPIISFSDASFGYPG----GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS-AK--------   91 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~----~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~-~~--------   91 (239)
                      +.++|+++|++++|++    ...+|+|+||+|.+||+++|+||||||||||+|+|+|+++|++|+|.++ +.        
T Consensus       276 ~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~  355 (520)
T TIGR03269       276 GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKP  355 (520)
T ss_pred             CCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCcccccccc
Confidence            3568999999999952    2469999999999999999999999999999999999999999999884 21        


Q ss_pred             ---------eEEEEEeeccCCCCCCCCcHHHHHHHh--C--CC-CcHHHHHHHHHhcCCCcc----cccCCCCCCChHHH
Q 026376           92 ---------VRIAVFSQHHVDGLDLSSNPLLYMMRC--F--PG-VPEQKLRAHLGSFGVTGN----LALQPMYTLSGGQK  153 (239)
Q Consensus        92 ---------~~~~~~~q~~~~~~~~~~~~~~~~~~~--~--~~-~~~~~~~~~l~~~~l~~~----~~~~~~~~LSgGqk  153 (239)
                               ..++|++|++..  ....+...++...  .  .. ...+++.++++.+++...    ..++++.+||||||
T Consensus       356 ~~~~~~~~~~~i~~v~q~~~l--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~  433 (520)
T TIGR03269       356 GPDGRGRAKRYIGILHQEYDL--YPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGER  433 (520)
T ss_pred             chhhHHHHhhhEEEEccCccc--CCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHH
Confidence                     248999998532  2223444444211  1  11 123457788999999641    45789999999999


Q ss_pred             HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCCh
Q 026376          154 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTF  229 (239)
Q Consensus       154 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~  229 (239)
                      |||+|||||+.+|++|||||||++||+.++..+.+.+.+    .+.|||+||||++++.++||++++|++|+++ +.|++
T Consensus       434 qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~-~~g~~  512 (520)
T TIGR03269       434 HRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIV-KIGDP  512 (520)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCH
Confidence            999999999999999999999999999999998887753    3679999999999999999999999999997 67888


Q ss_pred             hHHHHHh
Q 026376          230 HDYKKML  236 (239)
Q Consensus       230 ~~~~~~~  236 (239)
                      +++.+++
T Consensus       513 ~~~~~~~  519 (520)
T TIGR03269       513 EEIVEEL  519 (520)
T ss_pred             HHHHhhc
Confidence            8877654

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=6.1e-47  Score=353.05  Aligned_cols=206  Identities=20%  Similarity=0.323  Sum_probs=166.7

Q ss_pred             CCeEEEEeeEEEcCC---CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-----CceeEEecCc------
Q 026376           26 PPIISFSDASFGYPG---GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK------   91 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~---~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~------   91 (239)
                      +++|+++|+++.|++   ...+|+++||+|.+||+++|+||||||||||+|+|+|+++|     ++|+|.+++.      
T Consensus         3 ~~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~   82 (529)
T PRK15134          3 QPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS   82 (529)
T ss_pred             CceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCC
Confidence            358999999999953   24699999999999999999999999999999999999987     7999987652      


Q ss_pred             ---------eEEEEEeeccCCCCCCCCcHHHHHH---HhCCC----CcHHHHHHHHHhcCCCcc--cccCCCCCCChHHH
Q 026376           92 ---------VRIAVFSQHHVDGLDLSSNPLLYMM---RCFPG----VPEQKLRAHLGSFGVTGN--LALQPMYTLSGGQK  153 (239)
Q Consensus        92 ---------~~~~~~~q~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~l~~~~l~~~--~~~~~~~~LSgGqk  153 (239)
                               ..++|++|++...+....+....+.   .....    ...+++.++++.+++.+.  ..++++.+||||||
T Consensus        83 ~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~  162 (529)
T PRK15134         83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGER  162 (529)
T ss_pred             HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHH
Confidence                     2589999986322222222222221   11111    123567889999999642  34788999999999


Q ss_pred             HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCCh
Q 026376          154 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTF  229 (239)
Q Consensus       154 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~  229 (239)
                      |||+|||||+.+|++|||||||++||+.++.++.+.+++    .+.|||+||||++++..+||+|++|++|+++ +.|++
T Consensus       163 qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~-~~g~~  241 (529)
T PRK15134        163 QRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV-EQNRA  241 (529)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE-EeCCH
Confidence            999999999999999999999999999999998887765    3679999999999999999999999999997 56777


Q ss_pred             hHH
Q 026376          230 HDY  232 (239)
Q Consensus       230 ~~~  232 (239)
                      +++
T Consensus       242 ~~~  244 (529)
T PRK15134        242 ATL  244 (529)
T ss_pred             HHH
Confidence            765

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.9e-46  Score=318.61  Aligned_cols=201  Identities=21%  Similarity=0.274  Sum_probs=163.3

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-----CceeEEecCc-----------
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK-----------   91 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~-----------   91 (239)
                      +|+++|+++.|+ ++.+++|+||+|++||+++|+||||||||||+++|+|+.+|     ++|+|.+++.           
T Consensus         3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~   81 (250)
T PRK14240          3 KISVKDLDLFYG-DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQ   81 (250)
T ss_pred             eEEEEEEEEEEC-CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHH
Confidence            589999999995 45699999999999999999999999999999999999763     6999987652           


Q ss_pred             --eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHH
Q 026376           92 --VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFA  159 (239)
Q Consensus        92 --~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~la  159 (239)
                        ..++|++|++.. +.  .+...++..  .....     ..+++.++++.+++..   ...++++.+||||||||++||
T Consensus        82 ~~~~i~~~~q~~~~-~~--~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la  158 (250)
T PRK14240         82 LRKRVGMVFQQPNP-FP--MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIA  158 (250)
T ss_pred             HhccEEEEecCCcc-Cc--ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHH
Confidence              248999998632 12  344433321  11111     2345667788887642   234678899999999999999


Q ss_pred             HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          160 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       160 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      |||+.+|++|||||||++||+.++..+.+.|++.  +.|||++|||++.+..+||++++|++|+++ ..|+.+++.
T Consensus       159 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~  233 (250)
T PRK14240        159 RALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIV-EFGDTVDLF  233 (250)
T ss_pred             HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEE-EeCCHHHHH
Confidence            9999999999999999999999999988887654  469999999999999999999999999997 567777664

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-46  Score=324.78  Aligned_cols=204  Identities=27%  Similarity=0.377  Sum_probs=167.3

Q ss_pred             CCeEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCc---eeEEecCc----------
Q 026376           26 PPIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS---GTVFRSAK----------   91 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~---G~i~~~~~----------   91 (239)
                      +.+|+++|+++.|++. ..+|+++||+|.+||+++|+||||||||||+++|+|+++|++   |+|.+++.          
T Consensus         3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~   82 (282)
T PRK13640          3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI   82 (282)
T ss_pred             CceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence            3579999999999642 468999999999999999999999999999999999999998   89987663          


Q ss_pred             -eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 026376           92 -VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK  164 (239)
Q Consensus        92 -~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~  164 (239)
                       ..++|++|++...+ ...+..+++..  ......    .+++.++++.+++.+ ..++++.+|||||+||++|||||+.
T Consensus        83 ~~~ig~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LS~G~~qrv~laral~~  160 (282)
T PRK13640         83 REKVGIVFQNPDNQF-VGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLD-YIDSEPANLSGGQKQRVAIAGILAV  160 (282)
T ss_pred             HhheEEEEECHHHhh-ccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChh-HhcCCcccCCHHHHHHHHHHHHHHc
Confidence             25899999863111 12344444421  111122    245778899999974 5678899999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      +|++|||||||+|||+.++..+.+.|.+.    +.|||++||+++++. .||++++|++|+++ ..|+++++.
T Consensus       161 ~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~~~  231 (282)
T PRK13640        161 EPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLL-AQGSPVEIF  231 (282)
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEE-EeCCHHHHh
Confidence            99999999999999999999888877543    569999999999985 79999999999997 678887764

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-46  Score=318.48  Aligned_cols=202  Identities=22%  Similarity=0.308  Sum_probs=164.1

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCc--CC---CceeEEecCc----------
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--QP---SSGTVFRSAK----------   91 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~--~p---~~G~i~~~~~----------   91 (239)
                      ++|+++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+.  +|   ++|+|.+++.          
T Consensus         4 ~~l~~~~l~~~~~-~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~   82 (252)
T PRK14239          4 PILQVSDLSVYYN-KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV   82 (252)
T ss_pred             ceEEEEeeEEEEC-CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence            4799999999995 456999999999999999999999999999999999985  46   5999987652          


Q ss_pred             ---eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHH
Q 026376           92 ---VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAF  158 (239)
Q Consensus        92 ---~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~l  158 (239)
                         ..++|++|++.. +.  .+..+++..  .....     ...++.++++.+++..   ...++++.+||||||||++|
T Consensus        83 ~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l  159 (252)
T PRK14239         83 DLRKEIGMVFQQPNP-FP--MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCI  159 (252)
T ss_pred             hhhhcEEEEecCCcc-Cc--CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHH
Confidence               248999998642 22  344444321  11111     1245667888888742   23467889999999999999


Q ss_pred             HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          159 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       159 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      ||||+.+|++|||||||++||+.++..+.+.|.+.  +.|||++|||++++..+||++++|++|+++ +.|+++++.
T Consensus       160 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  235 (252)
T PRK14239        160 ARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLI-EYNDTKQMF  235 (252)
T ss_pred             HHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence            99999999999999999999999999988888654  469999999999999999999999999997 578877764

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.9e-46  Score=322.45  Aligned_cols=205  Identities=19%  Similarity=0.271  Sum_probs=164.6

Q ss_pred             CCCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCceeEEecCc-------
Q 026376           24 PGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK-------   91 (239)
Q Consensus        24 ~~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~-------   91 (239)
                      ++.++|+++|++++|+ +..+|+|+||+|.+||+++|+|+||||||||+++|+|+++     |++|+|.+++.       
T Consensus        20 ~~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~   98 (271)
T PRK14238         20 PKKVVFDTQNLNLWYG-EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY   98 (271)
T ss_pred             CCceEEEEeeeEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence            4566899999999995 4569999999999999999999999999999999999987     69999988652       


Q ss_pred             ------eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC-c----HHHHHHHHHhcCCCc---ccccCCCCCCChHHHHH
Q 026376           92 ------VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-P----EQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSR  155 (239)
Q Consensus        92 ------~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-~----~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqr  155 (239)
                            ..++|++|++... .  .+...++..  ..... .    ...+.++++.+++..   ...++++.+||||||||
T Consensus        99 ~~~~~~~~i~~v~q~~~~~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qr  175 (271)
T PRK14238         99 SVEELRTNVGMVFQKPNPF-P--KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQR  175 (271)
T ss_pred             cHHHHhhhEEEEecCCccc-c--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHH
Confidence                  2489999986421 1  244444321  11111 1    223455666664321   23467889999999999


Q ss_pred             HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          156 VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       156 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      ++|||||+.+|++|||||||++||+.++..+.+.|+++  +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus       176 v~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~-~~g~~~~~~  254 (271)
T PRK14238        176 LCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVN-EYDDTDKIF  254 (271)
T ss_pred             HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence            99999999999999999999999999999988877654  469999999999999999999999999997 568877653

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.7e-46  Score=318.22  Aligned_cols=202  Identities=19%  Similarity=0.249  Sum_probs=164.0

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC--C---CceeEEecCc-----------
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ--P---SSGTVFRSAK-----------   91 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~--p---~~G~i~~~~~-----------   91 (239)
                      .|+++|++++|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++  |   ++|+|.+++.           
T Consensus         4 ~l~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~   82 (252)
T PRK14256          4 KVKLEQLNVHFG-KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS   82 (252)
T ss_pred             EEEEEEEEEEeC-CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHH
Confidence            589999999995 4579999999999999999999999999999999999986  4   6899987652           


Q ss_pred             --eEEEEEeeccCCCCCCCCcHHHHHHH---hCCCC----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHH
Q 026376           92 --VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGV----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFA  159 (239)
Q Consensus        92 --~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~la  159 (239)
                        ..++|++|++..  ....+...++..   .....    ..+++.++++.+++..   ...++.+.+||||||||++||
T Consensus        83 ~~~~i~~~~q~~~~--~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~la  160 (252)
T PRK14256         83 IRRRVGMVFQKPNP--FPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIA  160 (252)
T ss_pred             hhccEEEEecCCCC--CCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHH
Confidence              248999998642  222233333321   11111    1245677888898853   234577899999999999999


Q ss_pred             HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          160 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       160 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      |||+.+|++|||||||++||+.++..+.+.|+++  +.|||++|||++++..+||++++|++|++. ..|+++++.
T Consensus       161 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  235 (252)
T PRK14256        161 RTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLV-ECGETKKIF  235 (252)
T ss_pred             HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEE-EeCCHHHHH
Confidence            9999999999999999999999999988877654  469999999999999999999999999997 568877653

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=100.00  E-value=1.3e-46  Score=313.79  Aligned_cols=190  Identities=28%  Similarity=0.435  Sum_probs=157.0

Q ss_pred             EEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376           29 ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV   96 (239)
Q Consensus        29 l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~   96 (239)
                      |+++|++++|++. ..+|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++.           ..++|
T Consensus         3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   82 (220)
T cd03245           3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY   82 (220)
T ss_pred             EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence            7899999999642 46899999999999999999999999999999999999999999998763           25899


Q ss_pred             EeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccC-----------CCCCCChHHHHHHHHHHHhccC
Q 026376           97 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ-----------PMYTLSGGQKSRVAFAKITFKK  165 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~LSgGqkqrv~laral~~~  165 (239)
                      ++|++... .  .+..+++..........++.++++.+++.+. .++           .+.+||||||||++|||||+.+
T Consensus        83 ~~q~~~~~-~--~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~  158 (220)
T cd03245          83 VPQDVTLF-Y--GTLRDNITLGAPLADDERILRAAELAGVTDF-VNKHPNGLDLQIGERGRGLSGGQRQAVALARALLND  158 (220)
T ss_pred             eCCCCccc-c--chHHHHhhcCCCCCCHHHHHHHHHHcCcHHH-HHhccccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence            99986422 1  3444444322112234566778888888542 333           3469999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376          166 PHIILLDEPSNHLDLDAVEALIQGLVLFQ--GGILMVSHDEHLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       166 p~llllDEPt~~LD~~~~~~l~~~l~~~~--~tii~vsHd~~~~~~~~d~i~~l~~G~i~  223 (239)
                      |++|||||||+|||+.++..+.+.|.+..  .|||++|||++++ ++||++++|++|+++
T Consensus       159 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~l~~g~i~  217 (220)
T cd03245         159 PPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSGRIV  217 (220)
T ss_pred             CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCeEe
Confidence            99999999999999999999998887653  5999999999987 699999999999986

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=100.00  E-value=2.1e-46  Score=317.81  Aligned_cols=201  Identities=22%  Similarity=0.373  Sum_probs=159.8

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCc--CCCceeEEecCc------------eE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--QPSSGTVFRSAK------------VR   93 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~--~p~~G~i~~~~~------------~~   93 (239)
                      +|+++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+.  +|++|+|.+++.            ..
T Consensus         1 ~i~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~   79 (248)
T PRK09580          1 MLSIKDLHVSVE-DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG   79 (248)
T ss_pred             CeEEEEEEEEeC-CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence            488999999996 456999999999999999999999999999999999995  699999988763            24


Q ss_pred             EEEEeeccCCCCCCCCcHHHHHH---H---hCCC---Cc----HHHHHHHHHhcCCCcccccCCCC-CCChHHHHHHHHH
Q 026376           94 IAVFSQHHVDGLDLSSNPLLYMM---R---CFPG---VP----EQKLRAHLGSFGVTGNLALQPMY-TLSGGQKSRVAFA  159 (239)
Q Consensus        94 ~~~~~q~~~~~~~~~~~~~~~~~---~---~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkqrv~la  159 (239)
                      ++|++|++......  +...+..   .   ....   ..    .+.+.++++.+++.+...++++. +|||||||||+||
T Consensus        80 i~~~~q~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~la  157 (248)
T PRK09580         80 IFMAFQYPVEIPGV--SNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDIL  157 (248)
T ss_pred             eEEEecCchhccch--hHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHH
Confidence            88999986322111  1111110   0   0000   01    23456788888885444556665 7999999999999


Q ss_pred             HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhh-cCeEEEEeCCeEEeeCCChhHH
Q 026376          160 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGS-VEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       160 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                      |||+.+|++|||||||++||+.++..+.+.+++   .+.|||++|||++++..+ ||++++|++|+++ +.|+++..
T Consensus       158 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~-~~g~~~~~  233 (248)
T PRK09580        158 QMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIV-KSGDFTLV  233 (248)
T ss_pred             HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEE-EeCCHHHH
Confidence            999999999999999999999999988876654   357999999999999887 8999999999997 67888744

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-46  Score=318.95  Aligned_cols=202  Identities=20%  Similarity=0.289  Sum_probs=164.6

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCceeEEecCc----------
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK----------   91 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~----------   91 (239)
                      ++|+++|++++|+ .+.+|+++||+|++||+++|+|+||||||||+++|+|+++     |++|+|.+++.          
T Consensus         3 ~~l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~   81 (251)
T PRK14251          3 NIISAKDVHLSYG-NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV   81 (251)
T ss_pred             ceEEEEeeEEEEC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence            3799999999995 4579999999999999999999999999999999999997     48999987653          


Q ss_pred             ---eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHH
Q 026376           92 ---VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAF  158 (239)
Q Consensus        92 ---~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~l  158 (239)
                         ..++|++|++.. +.  .+...++..  .....     ...++.++++.+++..   ...++++.+||||||||++|
T Consensus        82 ~~~~~i~~~~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~l  158 (251)
T PRK14251         82 ELRKEVGMVFQQPTP-FP--FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICI  158 (251)
T ss_pred             HhhccEEEEecCCcc-CC--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHH
Confidence               248999998632 12  344444321  11111     1245677888888841   23467889999999999999


Q ss_pred             HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          159 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       159 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      ||||+.+|++|||||||++||+.++..+.+.+.+.  +.|||++|||++++..+||++++|++|++. ..|+.+++.
T Consensus       159 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  234 (251)
T PRK14251        159 ARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLI-EAGPTEEMF  234 (251)
T ss_pred             HHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEE-EeCCHHHHH
Confidence            99999999999999999999999999998888764  569999999999999999999999999997 567776653

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-46  Score=318.83  Aligned_cols=202  Identities=21%  Similarity=0.307  Sum_probs=162.1

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCC-----ceeEEecCc-----------
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-----SGTVFRSAK-----------   91 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~-----~G~i~~~~~-----------   91 (239)
                      +|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|+     +|+|.+++.           
T Consensus         4 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~   82 (252)
T PRK14272          4 LLSAQDVNIYYG-DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA   82 (252)
T ss_pred             EEEEeeeEEEEC-CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence            689999999995 457999999999999999999999999999999999999874     899987652           


Q ss_pred             --eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC-c----HHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHH
Q 026376           92 --VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-P----EQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFA  159 (239)
Q Consensus        92 --~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-~----~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~la  159 (239)
                        ..++|++|++...  ...+..+++..  ..... .    .+.+.++++.+++..   ...++++.+||||||||++||
T Consensus        83 ~~~~i~~~~q~~~~~--~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la  160 (252)
T PRK14272         83 MRRRVGMVFQKPNPF--PTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIA  160 (252)
T ss_pred             hhceeEEEeccCccC--cCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHH
Confidence              2589999986422  22244444321  11111 1    223445566666531   234678899999999999999


Q ss_pred             HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          160 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       160 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      |||+.+|++|||||||++||+.++..+.+.|++.  +.|||++|||++++..+||++++|++|+++ +.|+++++.
T Consensus       161 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  235 (252)
T PRK14272        161 RALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLV-EHGPTDQLF  235 (252)
T ss_pred             HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence            9999999999999999999999999988888754  469999999999999999999999999997 678877764

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=100.00  E-value=9.1e-47  Score=313.67  Aligned_cols=187  Identities=25%  Similarity=0.316  Sum_probs=154.0

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------------eE
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VR   93 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~~   93 (239)
                      +++ ||+++|++ ..+  |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.+++.               ..
T Consensus         2 ~~~-~l~~~~~~-~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~   76 (214)
T cd03297           2 LCV-DIEKRLPD-FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRK   76 (214)
T ss_pred             cee-eeeEecCC-eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhc
Confidence            455 99999954 444  99999999 999999999999999999999999999999987652               24


Q ss_pred             EEEEeeccCCCCCCCCcHHHHHHHh---CC-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 026376           94 IAVFSQHHVDGLDLSSNPLLYMMRC---FP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII  169 (239)
Q Consensus        94 ~~~~~q~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ll  169 (239)
                      ++|++|++...  ...+...++...   .. ....+++.++++.+++.. ..++++.+||||||||++|||||+.+|++|
T Consensus        77 i~~~~q~~~~~--~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~ll  153 (214)
T cd03297          77 IGLVFQQYALF--PHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDH-LLNRYPAQLSGGEKQRVALARALAAQPELL  153 (214)
T ss_pred             EEEEecCCccC--CCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHh-HhhcCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            89999986422  223344333211   10 112346788999999964 467889999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376          170 LLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       170 llDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~  223 (239)
                      ||||||+|||+.++..+.+.+.+.    +.|||++|||.+++..+||++++|++|+++
T Consensus       154 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~  211 (214)
T cd03297         154 LLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQ  211 (214)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence            999999999999999888877543    569999999999999999999999999986

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.2e-47  Score=350.83  Aligned_cols=201  Identities=18%  Similarity=0.259  Sum_probs=167.1

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC--CceeEEecCc------------e
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP--SSGTVFRSAK------------V   92 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~~------------~   92 (239)
                      ++|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+++|  ++|+|++++.            .
T Consensus         4 ~~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~   82 (506)
T PRK13549          4 YLLEMKNITKTFG-GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA   82 (506)
T ss_pred             ceEEEeeeEEEeC-CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence            4799999999995 45799999999999999999999999999999999999996  8999988763            2


Q ss_pred             EEEEEeeccCCCCCCCCcHHHHHHHh--CC--C-C----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 026376           93 RIAVFSQHHVDGLDLSSNPLLYMMRC--FP--G-V----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF  163 (239)
Q Consensus        93 ~~~~~~q~~~~~~~~~~~~~~~~~~~--~~--~-~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~  163 (239)
                      .++|++|++..  ....+..+++...  ..  . .    ..+++.++++.+++.. ..++++.+|||||||||+|||||+
T Consensus        83 ~i~~v~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqrv~la~al~  159 (506)
T PRK13549         83 GIAIIHQELAL--VKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDI-NPATPVGNLGLGQQQLVEIAKALN  159 (506)
T ss_pred             CeEEEEecccc--CCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCC-CcccchhhCCHHHHHHHHHHHHHh
Confidence            48999998632  2223444443211  00  1 1    1245788999999964 567899999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376          164 KKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                      .+|++|||||||++||+.++..+.+.+.+.   +.|||+||||++++..+||++++|++|+++ +.|+++++
T Consensus       160 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~  230 (506)
T PRK13549        160 KQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHI-GTRPAAGM  230 (506)
T ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEe-eecccccC
Confidence            999999999999999999999888877553   569999999999999999999999999986 56776654

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.1e-46  Score=311.35  Aligned_cols=193  Identities=25%  Similarity=0.342  Sum_probs=159.5

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEee
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ   99 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~q   99 (239)
                      ++++|+++.|+ .  .+.|+||++++|++++|+||||||||||+++|+|+++|++|+|.+++.         ..++|++|
T Consensus         1 ~~~~~l~~~~~-~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q   77 (213)
T TIGR01277         1 LALDKVRYEYE-H--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ   77 (213)
T ss_pred             CeEEeeeEEeC-C--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEec
Confidence            46899999995 2  468999999999999999999999999999999999999999998763         24899999


Q ss_pred             ccCCCCCCCCcHHHHHHHh----C--CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 026376          100 HHVDGLDLSSNPLLYMMRC----F--PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE  173 (239)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDE  173 (239)
                      ++...  ...+..+++...    .  ......++.++++.+++.+ ..++++.+||||||||++|||||+.+|+++||||
T Consensus        78 ~~~~~--~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~laral~~~p~llllDE  154 (213)
T TIGR01277        78 ENNLF--AHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIAD-YLDRLPEQLSGGQRQRVALARCLVRPNPILLLDE  154 (213)
T ss_pred             cCccC--CCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHH-HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            86422  223444443211    1  0112346778999999964 5678899999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCC
Q 026376          174 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGT  228 (239)
Q Consensus       174 Pt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~  228 (239)
                      ||++||+.++..+.+.+.+.    +.|||+|||+.+++..+||++++|++|++. ..|.
T Consensus       155 Pt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~-~~~~  212 (213)
T TIGR01277       155 PFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIK-VVSD  212 (213)
T ss_pred             CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEE-EecC
Confidence            99999999999888777543    569999999999999999999999999997 4443

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=100.00  E-value=2.8e-46  Score=317.95  Aligned_cols=201  Identities=22%  Similarity=0.379  Sum_probs=161.1

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC--cCCCceeEEecCce-----------
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE--LQPSSGTVFRSAKV-----------   92 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl--~~p~~G~i~~~~~~-----------   92 (239)
                      +++|+++|+++.|+ +..+|+++||+|++||+++|+|+||||||||+++|+|+  ++|++|+|++++..           
T Consensus         5 ~~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~   83 (252)
T CHL00131          5 KPILEIKNLHASVN-ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH   83 (252)
T ss_pred             CceEEEEeEEEEeC-CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence            45799999999995 45699999999999999999999999999999999998  58999999876521           


Q ss_pred             -EEEEEeeccCCCCCCCCcHHHHHHHhC---------CCCc----HHHHHHHHHhcCCCcccccCCCC-CCChHHHHHHH
Q 026376           93 -RIAVFSQHHVDGLDLSSNPLLYMMRCF---------PGVP----EQKLRAHLGSFGVTGNLALQPMY-TLSGGQKSRVA  157 (239)
Q Consensus        93 -~~~~~~q~~~~~~~~~~~~~~~~~~~~---------~~~~----~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkqrv~  157 (239)
                       .++|++|++...  ...+...++....         ....    .+++.++++.+++.....++++. .|||||||||+
T Consensus        84 ~~~~~~~q~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~  161 (252)
T CHL00131         84 LGIFLAFQYPIEI--PGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNE  161 (252)
T ss_pred             eeEEEEecccccc--ccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHH
Confidence             367888875321  1122222221100         0011    23467789999996334566776 59999999999


Q ss_pred             HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhh-cCeEEEEeCCeEEeeCCChh
Q 026376          158 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGS-VEELWVVSEGKATPFHGTFH  230 (239)
Q Consensus       158 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~  230 (239)
                      |||||+.+|++|||||||++||+.++..+.+.|.+.   +.|||++|||++++..+ ||++++|++|+++ +.|+++
T Consensus       162 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~-~~~~~~  237 (252)
T CHL00131        162 ILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKII-KTGDAE  237 (252)
T ss_pred             HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEE-EecChh
Confidence            999999999999999999999999999988877654   57999999999999876 8999999999997 678876

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.1e-46  Score=322.08  Aligned_cols=202  Identities=24%  Similarity=0.330  Sum_probs=165.6

Q ss_pred             eEEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376           28 IISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI   94 (239)
Q Consensus        28 ~l~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~   94 (239)
                      +|+++|++++|++.  ..+|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.+++.           ..+
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i   83 (277)
T PRK13642          4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI   83 (277)
T ss_pred             eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence            79999999999632  35899999999999999999999999999999999999999999988763           248


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI  168 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~l  168 (239)
                      +|++|++...+ ...+...++..  ......    .+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++
T Consensus        84 ~~v~q~~~~~~-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~lAraL~~~p~l  161 (277)
T PRK13642         84 GMVFQNPDNQF-VGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLD-FKTREPARLSGGQKQRVAVAGIIALRPEI  161 (277)
T ss_pred             EEEEECHHHhh-ccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHh-HhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            99999862111 12233443321  111111    235678899999964 56788999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          169 ILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       169 lllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      |||||||++||+.++..+.+.+.+.    +.|||++|||++++. .||++++|++|+++ ..|+++++.
T Consensus       162 lllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~~~  228 (277)
T PRK13642        162 IILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEII-KEAAPSELF  228 (277)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-EeCCHHHHh
Confidence            9999999999999999888877533    679999999999997 59999999999997 578887764

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.5e-46  Score=323.15  Aligned_cols=204  Identities=23%  Similarity=0.271  Sum_probs=165.9

Q ss_pred             CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCceeEEecCc--------
Q 026376           25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK--------   91 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~--------   91 (239)
                      ++++|+++|++++|+ +..+|+|+||+|.+||+++|+||||||||||+++|+|+.+     |++|+|.+++.        
T Consensus        36 ~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~  114 (286)
T PRK14275         36 GKPHVVAKNFSIYYG-EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD  114 (286)
T ss_pred             CceEEEEeeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence            456899999999995 4569999999999999999999999999999999999864     49999987652        


Q ss_pred             -----eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHH
Q 026376           92 -----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRV  156 (239)
Q Consensus        92 -----~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv  156 (239)
                           ..++|++|++.. +.  .+..+++..  .....     ..+.+.++++.+++..   ...++++.+||||||||+
T Consensus       115 ~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv  191 (286)
T PRK14275        115 EVLLRKKIGMVFQKPNP-FP--KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRL  191 (286)
T ss_pred             hHHhhhcEEEECCCCCC-Cc--cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHH
Confidence                 258999998642 11  244444431  11111     1234667888888731   234678899999999999


Q ss_pred             HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          157 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       157 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      +|||||+.+|++|||||||++||+.++..+.+.++++  +.|||++|||++++..+||++++|++|++. ..|+++++.
T Consensus       192 ~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~-~~g~~~~~~  269 (286)
T PRK14275        192 CVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLV-EHAPTAQLF  269 (286)
T ss_pred             HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence            9999999999999999999999999999998888765  359999999999999999999999999997 678877664

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-46  Score=323.10  Aligned_cols=200  Identities=27%  Similarity=0.408  Sum_probs=165.3

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCC--------ceeEEecCce-------
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS--------SGTVFRSAKV-------   92 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~--------~G~i~~~~~~-------   92 (239)
                      ||+++|++++|+ ++.+|+++||+|++|++++|+||||||||||+++|+|+++|+        +|+|.+++..       
T Consensus         1 ml~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~   79 (272)
T PRK13547          1 MLTADHLHVARR-HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP   79 (272)
T ss_pred             CeEEEEEEEEEC-CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence            489999999995 457999999999999999999999999999999999999998        9999987631       


Q ss_pred             ----EEEEEeeccCCCCCCCCcHHHHHHHh-CC---------CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHH
Q 026376           93 ----RIAVFSQHHVDGLDLSSNPLLYMMRC-FP---------GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF  158 (239)
Q Consensus        93 ----~~~~~~q~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~l  158 (239)
                          .++|++|++...+  ..+..+++... ..         ....+.+.++++.+++.. ..++++.+|||||||||+|
T Consensus        80 ~~~~~~~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~l  156 (272)
T PRK13547         80 RLARLRAVLPQAAQPAF--AFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATA-LVGRDVTTLSGGELARVQF  156 (272)
T ss_pred             HHHhhcEEecccCCCCC--CCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHh-hhcCCcccCCHHHHHHHHH
Confidence                3789999863222  23444443221 00         012245778899999974 4578899999999999999


Q ss_pred             HHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEee
Q 026376          159 AKITF---------KKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPF  225 (239)
Q Consensus       159 aral~---------~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~  225 (239)
                      ||||+         .+|++|||||||++||+.++..+.+.+.+.    +.|||+||||++++..+||++++|++|+++ .
T Consensus       157 aral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~-~  235 (272)
T PRK13547        157 ARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIV-A  235 (272)
T ss_pred             HHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEE-E
Confidence            99999         599999999999999999999888877642    569999999999999999999999999997 5


Q ss_pred             CCChhHH
Q 026376          226 HGTFHDY  232 (239)
Q Consensus       226 ~g~~~~~  232 (239)
                      .|+++++
T Consensus       236 ~g~~~~~  242 (272)
T PRK13547        236 HGAPADV  242 (272)
T ss_pred             ecCHHHH
Confidence            7887765

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.5e-46  Score=319.47  Aligned_cols=204  Identities=20%  Similarity=0.241  Sum_probs=166.5

Q ss_pred             CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCceeEEecCc--------
Q 026376           25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK--------   91 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~--------   91 (239)
                      ..++|+++|++++|+ ++.+|+|+||+|.+||+++|+||||||||||+++|+|+++     |++|+|.+++.        
T Consensus        17 ~~~~l~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~   95 (267)
T PRK14237         17 EEIALSTKDLHVYYG-KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN   95 (267)
T ss_pred             CCeEEEEeeEEEEEC-CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence            345899999999995 4679999999999999999999999999999999999986     58999987652        


Q ss_pred             -----eEEEEEeeccCCCCCCCCcHHHHHHHh--CCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHH
Q 026376           92 -----VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRV  156 (239)
Q Consensus        92 -----~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv  156 (239)
                           ..++|++|++.. +.  .+...++...  ....     ...++.++++.+++..   ...++++.+||||||||+
T Consensus        96 ~~~~~~~i~~v~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl  172 (267)
T PRK14237         96 VYEMRKHIGMVFQRPNP-FA--KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRL  172 (267)
T ss_pred             hHHHhcceEEEecCCcc-cc--ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHH
Confidence                 248999998632 11  2444444321  1111     1245667888888842   235678899999999999


Q ss_pred             HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          157 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       157 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      +|||||+.+|++|||||||++||+.++..+.+.+.+.  +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus       173 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  250 (267)
T PRK14237        173 CIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLI-EYDKTRNIF  250 (267)
T ss_pred             HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence            9999999999999999999999999999888877654  469999999999999999999999999997 578877764

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=100.00  E-value=9.2e-47  Score=335.60  Aligned_cols=195  Identities=22%  Similarity=0.246  Sum_probs=160.6

Q ss_pred             eeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------------eEEEEE
Q 026376           33 DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VRIAVF   97 (239)
Q Consensus        33 ~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~~~~~~   97 (239)
                      |++++|+ +.. + ++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.               ..++|+
T Consensus         4 ~l~~~~~-~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v   80 (354)
T TIGR02142         4 RFSKRLG-DFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV   80 (354)
T ss_pred             EEEEEEC-CEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEE
Confidence            8999995 443 4 999999999999999999999999999999999999999987652               248999


Q ss_pred             eeccCCCCCCCCcHHHHHHHh---CC-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 026376           98 SQHHVDGLDLSSNPLLYMMRC---FP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE  173 (239)
Q Consensus        98 ~q~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDE  173 (239)
                      +|++...  ...+..+++...   .. .....++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||
T Consensus        81 ~q~~~l~--~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDE  157 (354)
T TIGR02142        81 FQEARLF--PHLSVRGNLRYGMKRARPSERRISFERVIELLGIGH-LLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDE  157 (354)
T ss_pred             ecCCccC--CCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence            9986422  223444443211   11 111345788999999974 5678999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          174 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       174 Pt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      ||++||+.++..+.+.|++.    +.|||+||||++++..+||++++|++|++. ..|+++++..
T Consensus       158 Pts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~  221 (354)
T TIGR02142       158 PLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVA-AAGPIAEVWA  221 (354)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEE-EECCHHHHhc
Confidence            99999999999888777643    569999999999999999999999999997 5788877653

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=9e-47  Score=351.90  Aligned_cols=207  Identities=25%  Similarity=0.375  Sum_probs=168.4

Q ss_pred             CCCeEEEEeeEEEcCC----------CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---
Q 026376           25 GPPIISFSDASFGYPG----------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---   91 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~----------~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---   91 (239)
                      ++++|+++|+++.|+.          ++.+|+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|++++.   
T Consensus       272 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~  350 (529)
T PRK15134        272 ASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLH  350 (529)
T ss_pred             CCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEcc
Confidence            4568999999999952          3468999999999999999999999999999999999985 8999998762   


Q ss_pred             -----------eEEEEEeeccCCCCCCCCcHHHHHHH---hCC---C--CcHHHHHHHHHhcCCCcccccCCCCCCChHH
Q 026376           92 -----------VRIAVFSQHHVDGLDLSSNPLLYMMR---CFP---G--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQ  152 (239)
Q Consensus        92 -----------~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~---~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq  152 (239)
                                 ..++|++|++...+....++..++..   ...   .  ...+++.++++.+++.....++++.+|||||
T Consensus       351 ~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~  430 (529)
T PRK15134        351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQ  430 (529)
T ss_pred             ccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHH
Confidence                       24899999862122222344443321   111   1  1234677899999996334678999999999


Q ss_pred             HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCC
Q 026376          153 KSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGT  228 (239)
Q Consensus       153 kqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~  228 (239)
                      ||||+|||||+.+|++|||||||++||+.++..+++.+++    .+.|||+||||++++..+||++++|++|+++ ..|+
T Consensus       431 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~-~~~~  509 (529)
T PRK15134        431 RQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVV-EQGD  509 (529)
T ss_pred             HHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEE-EEcC
Confidence            9999999999999999999999999999999988887764    2579999999999999999999999999997 6788


Q ss_pred             hhHHH
Q 026376          229 FHDYK  233 (239)
Q Consensus       229 ~~~~~  233 (239)
                      ++++.
T Consensus       510 ~~~~~  514 (529)
T PRK15134        510 CERVF  514 (529)
T ss_pred             HHHHh
Confidence            77663

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=100.00  E-value=2.6e-46  Score=315.59  Aligned_cols=200  Identities=26%  Similarity=0.411  Sum_probs=157.6

Q ss_pred             EEEEeeEEEcCC--CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEE
Q 026376           29 ISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA   95 (239)
Q Consensus        29 l~~~~l~~~y~~--~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~   95 (239)
                      ++++|+++.|++  +..+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+++.           ..++
T Consensus         1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   80 (238)
T cd03249           1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG   80 (238)
T ss_pred             CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence            468999999964  246899999999999999999999999999999999999999999998762           2489


Q ss_pred             EEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhc-----------CCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 026376           96 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF-----------GVTGNLALQPMYTLSGGQKSRVAFAKITFK  164 (239)
Q Consensus        96 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgGqkqrv~laral~~  164 (239)
                      |++|++.. +  ..+..+++..........++.+.++.+           ++. ...++++.+|||||||||+|||||+.
T Consensus        81 ~~~q~~~~-~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~LS~G~~qrv~la~al~~  156 (238)
T cd03249          81 LVSQEPVL-F--DGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYD-TLVGERGSQLSGGQKQRIAIARALLR  156 (238)
T ss_pred             EECCchhh-h--hhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccc-eeeccCCccCCHHHHHHHHHHHHHhc
Confidence            99998632 1  124444432211111222333333332           332 22456779999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      +|++|||||||++||+.++..+.+.|.+.  +.|||++|||++++. +||++++|++|+++ +.++.+++.+
T Consensus       157 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~-~~~~~~~~~~  226 (238)
T cd03249         157 NPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR-NADLIAVLQNGQVV-EQGTHDELMA  226 (238)
T ss_pred             CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-hCCEEEEEECCEEE-EeCCHHHHhh
Confidence            99999999999999999999998888654  469999999999997 89999999999996 6788777654

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=100.00  E-value=1.1e-46  Score=362.33  Aligned_cols=202  Identities=26%  Similarity=0.404  Sum_probs=173.7

Q ss_pred             eEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEE
Q 026376           28 IISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA   95 (239)
Q Consensus        28 ~l~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~   95 (239)
                      .|+++||+|+|++ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.           ..++
T Consensus       477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~  556 (710)
T TIGR03796       477 YVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVA  556 (710)
T ss_pred             eEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhee
Confidence            5999999999975 357999999999999999999999999999999999999999999998873           3699


Q ss_pred             EEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhccC
Q 026376           96 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKK  165 (239)
Q Consensus        96 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~~~  165 (239)
                      |++|++..   +..+..+++....+..+.+++.++++..++.+...          ......||||||||++|||||+++
T Consensus       557 ~v~Q~~~l---f~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~  633 (710)
T TIGR03796       557 MVDQDIFL---FEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRN  633 (710)
T ss_pred             EEecCChh---hhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhC
Confidence            99999742   34566666643333456788888888888754322          123467999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          166 PHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       166 p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |++||||||||+||..+...+.+.+.+.+.|+|+|||+++.+.. ||+|++|++|+++ ..|+++++.+
T Consensus       634 p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~-~~G~~~~Ll~  700 (710)
T TIGR03796       634 PSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRD-CDEIIVLERGKVV-QRGTHEELWA  700 (710)
T ss_pred             CCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEeCCEEE-EecCHHHHHH
Confidence            99999999999999999999999998878899999999999875 9999999999997 6899998764

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.3e-46  Score=319.38  Aligned_cols=204  Identities=18%  Similarity=0.241  Sum_probs=166.1

Q ss_pred             CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCceeEEecCc--------
Q 026376           25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK--------   91 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~--------   91 (239)
                      ..++|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.+++.        
T Consensus        22 ~~~~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~  100 (272)
T PRK14236         22 EQTALEVRNLNLFYG-DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD  100 (272)
T ss_pred             CCcEEEEEEEEEEEC-CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence            355899999999995 4579999999999999999999999999999999999987     48999987652        


Q ss_pred             -----eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHH
Q 026376           92 -----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRV  156 (239)
Q Consensus        92 -----~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv  156 (239)
                           ..++|++|++... .  .+..+++..  .....     ..+++.++++.+++..   ...++++.+||||||||+
T Consensus       101 ~~~~~~~i~~v~q~~~l~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv  177 (272)
T PRK14236        101 VAELRRRVGMVFQRPNPF-P--KSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRL  177 (272)
T ss_pred             HHHHhccEEEEecCCccC-c--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHH
Confidence                 2589999986321 1  244444321  11111     1244677888888753   234678899999999999


Q ss_pred             HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          157 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       157 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      +|||||+.+|++|||||||+|||+.++..+.+.+.+.  +.|||++||+++++..+||++++|++|+++ ..|+++++.
T Consensus       178 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  255 (272)
T PRK14236        178 VIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLV-EYGDTDTLF  255 (272)
T ss_pred             HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEE-ecCCHHHHh
Confidence            9999999999999999999999999999888877654  469999999999999999999999999997 678877764

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=8.9e-47  Score=349.01  Aligned_cols=200  Identities=19%  Similarity=0.225  Sum_probs=165.3

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV   96 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~   96 (239)
                      +|+++|++++|+ +..+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++.           ..++|
T Consensus         3 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~   81 (490)
T PRK10938          3 SLQISQGTFRLS-DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD   81 (490)
T ss_pred             eEEEEeEEEEcC-CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence            699999999995 456999999999999999999999999999999999999999999987542           13789


Q ss_pred             EeeccCCCC-CC-----CCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 026376           97 FSQHHVDGL-DL-----SSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL  170 (239)
Q Consensus        97 ~~q~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~lll  170 (239)
                      ++|++...+ ..     ..+...++.  ......+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||
T Consensus        82 ~~q~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~~p~lll  158 (490)
T PRK10938         82 EWQRNNTDMLSPGEDDTGRTTAEIIQ--DEVKDPARCEQLAQQFGITA-LLDRRFKYLSTGETRKTLLCQALMSEPDLLI  158 (490)
T ss_pred             eccCcchhhcccchhhccccHHHhcc--cchhHHHHHHHHHHHcCCHh-hhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence            999753211 00     112222211  01122456788999999964 5688999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376          171 LDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       171 lDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                      |||||++||+.++.++.+.|.++   +.|||+||||++++.++||++++|++|+++ +.|+++++
T Consensus       159 LDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~  222 (490)
T PRK10938        159 LDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLA-ETGEREEI  222 (490)
T ss_pred             EcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEE-EeCCHHHH
Confidence            99999999999999988877654   569999999999999999999999999997 57887765

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.2e-46  Score=320.23  Aligned_cols=205  Identities=20%  Similarity=0.249  Sum_probs=165.7

Q ss_pred             CCCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-----CceeEEecCc-------
Q 026376           24 PGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK-------   91 (239)
Q Consensus        24 ~~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~-------   91 (239)
                      ++.++|+++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|     ++|+|.+++.       
T Consensus        16 ~~~~~l~~~nl~~~~~-~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~   94 (274)
T PRK14265         16 PDHSVFEVEGVKVFYG-GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQI   94 (274)
T ss_pred             CCCceEEEeeEEEEeC-CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccc
Confidence            3456899999999995 45799999999999999999999999999999999999863     6899987652       


Q ss_pred             ------eEEEEEeeccCCCCCCCCcHHHHHHHh--CCC---CcHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 026376           92 ------VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPG---VPEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA  157 (239)
Q Consensus        92 ------~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~  157 (239)
                            ..++|++|++... .  .+...++...  ...   ...+.+.++++.+++..   ...++++.+|||||||||+
T Consensus        95 ~~~~~~~~i~~v~q~~~l~-~--~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~  171 (274)
T PRK14265         95 NSVKLRRQVGMVFQRPNPF-P--KSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLC  171 (274)
T ss_pred             hhHHHhhcEEEEccCCccc-c--ccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHH
Confidence                  2589999986321 1  2444443211  111   12334566777777631   2346788999999999999


Q ss_pred             HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEe---------CCeEEeeC
Q 026376          158 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVS---------EGKATPFH  226 (239)
Q Consensus       158 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~---------~G~i~~~~  226 (239)
                      |||||+.+|++|||||||++||+.++..+.+.|.++  +.|||++|||++++..+||++++|+         +|+++ ..
T Consensus       172 LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~-~~  250 (274)
T PRK14265        172 IARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV-EF  250 (274)
T ss_pred             HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE-Ee
Confidence            999999999999999999999999999998888765  4699999999999999999999997         79997 67


Q ss_pred             CChhHHH
Q 026376          227 GTFHDYK  233 (239)
Q Consensus       227 g~~~~~~  233 (239)
                      |+++++.
T Consensus       251 g~~~~~~  257 (274)
T PRK14265        251 SPTEQMF  257 (274)
T ss_pred             CCHHHHH
Confidence            8887764

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=100.00  E-value=4.7e-46  Score=313.75  Aligned_cols=199  Identities=26%  Similarity=0.319  Sum_probs=164.5

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEee
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ   99 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~q   99 (239)
                      |+++|++++|++ . +|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|++++.         ..++|++|
T Consensus         1 l~~~~l~~~~~~-~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q   78 (235)
T cd03299           1 LKVENLSKDWKE-F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQ   78 (235)
T ss_pred             CeeEeEEEEeCC-c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEee
Confidence            468999999953 3 799999999999999999999999999999999999999999998763         35899999


Q ss_pred             ccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 026376          100 HHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE  173 (239)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDE  173 (239)
                      ++...  ...+..+++..  .....    ..+++.++++.+++.+ ..++++.+|||||+||++||||++.+|++++|||
T Consensus        79 ~~~~~--~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~laral~~~p~llllDE  155 (235)
T cd03299          79 NYALF--PHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDH-LLNRKPETLSGGEQQRVAIARALVVNPKILLLDE  155 (235)
T ss_pred             cCccC--CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-HHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence            85322  12233333321  11111    2345678899999964 5678899999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          174 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       174 Pt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      ||++||+.++..+.+.+++.    +.|||++||+++++..+||++++|++|+++ ..|+++++.
T Consensus       156 Pt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  218 (235)
T cd03299         156 PFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLI-QVGKPEEVF  218 (235)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EecCHHHHH
Confidence            99999999999988877653    569999999999999999999999999997 578877654

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.5e-46  Score=316.19  Aligned_cols=201  Identities=19%  Similarity=0.241  Sum_probs=163.7

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-----CceeEEecCc-----------
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK-----------   91 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~-----------   91 (239)
                      +++++|+++.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|     ++|+|.+++.           
T Consensus         3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~   81 (249)
T PRK14253          3 KFNIENLDLFYG-ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL   81 (249)
T ss_pred             eEEEeccEEEEC-CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence            689999999995 45799999999999999999999999999999999999986     5999987652           


Q ss_pred             -eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHHH
Q 026376           92 -VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFAK  160 (239)
Q Consensus        92 -~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~lar  160 (239)
                       ..++|++|++... .  .+...++..  .....     ..+++.++++.+++.+   ...++++.+|||||||||+|||
T Consensus        82 ~~~i~~~~q~~~~~-~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar  158 (249)
T PRK14253         82 RIKVGMVFQKPNPF-P--MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIAR  158 (249)
T ss_pred             HhheeEEecCCCcC-c--ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHH
Confidence             2489999986422 2  344443321  11111     1234566788887742   2346788999999999999999


Q ss_pred             HhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          161 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       161 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      ||+.+|++|||||||++||+.++..+.+.+.+.  +.|||++||+++++..+||++++|++|+++ ..|+.+++.
T Consensus       159 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~  232 (249)
T PRK14253        159 TIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELV-EHDDTQVIF  232 (249)
T ss_pred             HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence            999999999999999999999999988887754  469999999999999999999999999997 578877764

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=1.8e-46  Score=309.91  Aligned_cols=186  Identities=22%  Similarity=0.372  Sum_probs=155.6

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce----------EEEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV----------RIAVF   97 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~----------~~~~~   97 (239)
                      |++++|++++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++..          .++|+
T Consensus         1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~   79 (204)
T PRK13538          1 MLEARNLACERD-ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYL   79 (204)
T ss_pred             CeEEEEEEEEEC-CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEe
Confidence            588999999995 4579999999999999999999999999999999999999999999987632          48899


Q ss_pred             eeccCCCCCCCCcHHHHHHH---hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 026376           98 SQHHVDGLDLSSNPLLYMMR---CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP  174 (239)
Q Consensus        98 ~q~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEP  174 (239)
                      +|++..  ....+..+++..   .......+++.++++.+++.+ ..++++.+||||||||++|||||+.+|+++|||||
T Consensus        80 ~~~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP  156 (204)
T PRK13538         80 GHQPGI--KTELTALENLRFYQRLHGPGDDEALWEALAQVGLAG-FEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEP  156 (204)
T ss_pred             CCcccc--CcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHH-HhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            887532  222344444321   111134567888999999964 45788999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEE
Q 026376          175 SNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVV  217 (239)
Q Consensus       175 t~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l  217 (239)
                      |++||+.++..+.+.|+++   +.|||++|||.+++..+.+|++++
T Consensus       157 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~  202 (204)
T PRK13538        157 FTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL  202 (204)
T ss_pred             CccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence            9999999999998877654   579999999999999988888877

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=100.00  E-value=4.7e-46  Score=313.14  Aligned_cols=201  Identities=25%  Similarity=0.438  Sum_probs=160.5

Q ss_pred             EEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376           29 ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV   96 (239)
Q Consensus        29 l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~   96 (239)
                      |+++|++++|++. ..+++|+||++++|++++|+||||||||||+++|+|+++|++|+|.+++.           ..++|
T Consensus         1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (234)
T cd03251           1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL   80 (234)
T ss_pred             CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence            4789999999643 26899999999999999999999999999999999999999999998763           24899


Q ss_pred             EeeccCCCCCCCCcHHHHHHHhCCCCcHHHH---------HHHHHhc--CCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 026376           97 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKL---------RAHLGSF--GVTGNLALQPMYTLSGGQKSRVAFAKITFKK  165 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~laral~~~  165 (239)
                      ++|++...   ..+..+++...........+         .++++.+  ++.. ..++++.+||||||||++|||||+.+
T Consensus        81 ~~q~~~~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~  156 (234)
T cd03251          81 VSQDVFLF---NDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDT-VIGERGVKLSGGQRQRIAIARALLKD  156 (234)
T ss_pred             eCCCCeec---cccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcce-eeccCCCcCCHHHHHHHHHHHHHhcC
Confidence            99986321   23444444321111122222         2334444  4443 34677899999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376          166 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  235 (239)
Q Consensus       166 p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  235 (239)
                      |++|||||||++||+.++..+.+.|.+.  +.|||++|||++++.. ||++++|++|+++ ..|+++++...
T Consensus       157 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~-~~~~~~~~~~~  226 (234)
T cd03251         157 PPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN-ADRIVVLEDGKIV-ERGTHEELLAQ  226 (234)
T ss_pred             CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEecCCeEe-eeCCHHHHHHc
Confidence            9999999999999999999998888654  5699999999999976 9999999999997 67888887543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.8e-46  Score=320.21  Aligned_cols=205  Identities=20%  Similarity=0.322  Sum_probs=166.7

Q ss_pred             CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-----CceeEEecCc--------
Q 026376           25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK--------   91 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~--------   91 (239)
                      ..++|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.+++.        
T Consensus        18 ~~~~l~i~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~   96 (276)
T PRK14271         18 AAPAMAAVNLTLGFA-GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV   96 (276)
T ss_pred             cCcEEEEeeEEEEEC-CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchh
Confidence            356899999999995 46799999999999999999999999999999999999986     7999988652        


Q ss_pred             ----eEEEEEeeccCCCCCCCCcHHHHHHHh---CCCCcH----HHHHHHHHhcCCCcc---cccCCCCCCChHHHHHHH
Q 026376           92 ----VRIAVFSQHHVDGLDLSSNPLLYMMRC---FPGVPE----QKLRAHLGSFGVTGN---LALQPMYTLSGGQKSRVA  157 (239)
Q Consensus        92 ----~~~~~~~q~~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~  157 (239)
                          ..++|++|++... .  .+...++...   ......    ..+.++++.+++...   ..++.+.+||||||||++
T Consensus        97 ~~~~~~i~~v~q~~~l~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~  173 (276)
T PRK14271         97 LEFRRRVGMLFQRPNPF-P--MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLC  173 (276)
T ss_pred             HHHhhheEEeccCCccC-C--ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHH
Confidence                2489999986422 2  3444433211   111121    234567888888531   245778999999999999


Q ss_pred             HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          158 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       158 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |||||+.+|++|||||||++||+.++..+.+.|.+.  ..|||+||||++++..+||++++|++|+++ ..|+++++.+
T Consensus       174 LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~-~~g~~~~~~~  251 (276)
T PRK14271        174 LARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLV-EEGPTEQLFS  251 (276)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHh
Confidence            999999999999999999999999999988877654  469999999999999999999999999997 5688877643

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.4e-46  Score=335.67  Aligned_cols=197  Identities=22%  Similarity=0.241  Sum_probs=163.1

Q ss_pred             EeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------------e
Q 026376           32 SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------------V   92 (239)
Q Consensus        32 ~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------------~   92 (239)
                      .++.++| +...+|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|++++.                   .
T Consensus        28 ~~~~~~~-g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~  106 (382)
T TIGR03415        28 EEILDET-GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTH  106 (382)
T ss_pred             HHHHHhh-CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcC
Confidence            4556677 4567899999999999999999999999999999999999999999998762                   2


Q ss_pred             EEEEEeeccCCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 026376           93 RIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP  166 (239)
Q Consensus        93 ~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p  166 (239)
                      .++|++|++..  ....+..+++...  ....    ...++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|
T Consensus       107 ~i~~vfQ~~~l--~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~-~~~~~~~~LSgGq~QRV~LARALa~~P  183 (382)
T TIGR03415       107 RVSMVFQKFAL--MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQ-WADKKPGELSGGMQQRVGLARAFAMDA  183 (382)
T ss_pred             CEEEEECCCcC--CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence            59999998642  2223444443311  1111    2346788999999974 567889999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          167 HIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       167 ~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      +||||||||++||+.++..+.+.|.+    .+.|||+||||++++.++||++++|++|+++ ..|+++++.
T Consensus       184 ~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv-~~g~~~ei~  253 (382)
T TIGR03415       184 DILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRII-QHGTPEEIV  253 (382)
T ss_pred             CEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecCHHHHh
Confidence            99999999999999999988887754    2679999999999999999999999999997 578887764

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.7e-46  Score=315.22  Aligned_cols=202  Identities=21%  Similarity=0.262  Sum_probs=163.9

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCC-----ceeEEecCc----------
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-----SGTVFRSAK----------   91 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~-----~G~i~~~~~----------   91 (239)
                      ++|+++|++++|+ ++.+|+++||+|.+|++++|+||||||||||+++|+|+++|+     +|+|.+++.          
T Consensus         3 ~~l~~~~l~~~~~-~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~   81 (251)
T PRK14249          3 PKIKIRGVNFFYH-KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV   81 (251)
T ss_pred             ceEEEEEEEEEEC-CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence            4799999999995 456999999999999999999999999999999999999997     699987542          


Q ss_pred             ---eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHH
Q 026376           92 ---VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAF  158 (239)
Q Consensus        92 ---~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~l  158 (239)
                         ..++|++|++... .  .+..+++..  .....     ..+.+.++++.+++.+   ...++++.+||||||||++|
T Consensus        82 ~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~l  158 (251)
T PRK14249         82 NLRKRVGMVFQQPNPF-P--KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCI  158 (251)
T ss_pred             HhhceEEEEecCCccC-c--CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHH
Confidence               2499999986421 1  244443321  11111     1234566777777642   23567889999999999999


Q ss_pred             HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          159 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       159 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      ||||+.+|++|||||||++||+.++..+.+.+.+.  +.|||++|||++++..+||++++|++|++. ..|+++++.
T Consensus       159 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  234 (251)
T PRK14249        159 ARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLV-EYGRTGEIF  234 (251)
T ss_pred             HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEE-EeCCHHHHH
Confidence            99999999999999999999999999888877654  469999999999999999999999999997 568877654

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.4e-46  Score=317.90  Aligned_cols=205  Identities=19%  Similarity=0.264  Sum_probs=165.5

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecC---------------
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA---------------   90 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~---------------   90 (239)
                      .+++.++|++++|+ ++.+|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.+++               
T Consensus         8 ~~~i~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~   86 (257)
T PRK14246          8 EDVFNISRLYLYIN-DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI   86 (257)
T ss_pred             hhheeeeeEEEecC-CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence            46899999999995 56799999999999999999999999999999999999999997765443               


Q ss_pred             --ceEEEEEeeccCCCCCCCCcHHHHHHH---hCCCCc----HHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHH
Q 026376           91 --KVRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGVP----EQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAF  158 (239)
Q Consensus        91 --~~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~l  158 (239)
                        +..++|++|++...  ...+...++..   ......    ...+.++++.+++..   ...++++..||+|||||++|
T Consensus        87 ~~~~~i~~~~q~~~~~--~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~l  164 (257)
T PRK14246         87 KLRKEVGMVFQQPNPF--PHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTI  164 (257)
T ss_pred             HHhcceEEEccCCccC--CCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHH
Confidence              13589999986422  22233333321   111111    234677888899852   23467889999999999999


Q ss_pred             HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          159 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       159 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      ||||+.+|+++||||||++||+.++..+.+.+.+.  +.|||+|||+++++..+||++++|++|++. ..|+.+++.+
T Consensus       165 aral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~-~~g~~~~~~~  241 (257)
T PRK14246        165 ARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELV-EWGSSNEIFT  241 (257)
T ss_pred             HHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEE-EECCHHHHHh
Confidence            99999999999999999999999999988888754  469999999999999999999999999997 5687777653

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.8e-47  Score=350.27  Aligned_cols=207  Identities=19%  Similarity=0.269  Sum_probs=167.2

Q ss_pred             CCCeEEEEeeEEEcC--CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC-CCceeEEecCc----------
Q 026376           25 GPPIISFSDASFGYP--GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-PSSGTVFRSAK----------   91 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~--~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-p~~G~i~~~~~----------   91 (239)
                      +.++|+++|+++.|+  ++..+|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+++.          
T Consensus       256 ~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~  335 (506)
T PRK13549        256 GEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQA  335 (506)
T ss_pred             CCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHH
Confidence            345899999999994  23468999999999999999999999999999999999998 59999998652          


Q ss_pred             --eEEEEEeeccC-CCCCCCCcHHHHHHH----hCC-----CC--cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHH
Q 026376           92 --VRIAVFSQHHV-DGLDLSSNPLLYMMR----CFP-----GV--PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVA  157 (239)
Q Consensus        92 --~~~~~~~q~~~-~~~~~~~~~~~~~~~----~~~-----~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~  157 (239)
                        ..++|++|++. ..+....+..+++..    ...     ..  ..+++.++++.+++.....++++.+|||||||||+
T Consensus       336 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~  415 (506)
T PRK13549        336 IAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAV  415 (506)
T ss_pred             HHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHH
Confidence              23899999852 112222333333321    110     11  12457889999999533567889999999999999


Q ss_pred             HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376          158 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       158 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~---~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                      |||||+.+|++|||||||+|||+.++..+.+.+.   +.+.|||++|||++++.++||++++|++|+++ ..|+++++
T Consensus       416 lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~-~~~~~~~~  492 (506)
T PRK13549        416 LAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLK-GDLINHNL  492 (506)
T ss_pred             HHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEeccccC
Confidence            9999999999999999999999999988877665   34679999999999999999999999999996 56776665

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=100.00  E-value=5.2e-46  Score=313.85  Aligned_cols=200  Identities=27%  Similarity=0.326  Sum_probs=165.4

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEee
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ   99 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~q   99 (239)
                      ++++|++++|+ ++.+|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.+++.         ..++|++|
T Consensus         1 i~i~~l~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q   79 (237)
T TIGR00968         1 IEIANISKRFG-SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQ   79 (237)
T ss_pred             CEEEEEEEEEC-CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEec
Confidence            47899999995 457999999999999999999999999999999999999999999987652         24899999


Q ss_pred             ccCCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 026376          100 HHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE  173 (239)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDE  173 (239)
                      ++...  ...+..+++..  ....    ...+.+.++++.+++.+ ..++.+.+||+||+||++|||||+.+|+++||||
T Consensus        80 ~~~~~--~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~lS~G~~qrl~laral~~~p~llllDE  156 (237)
T TIGR00968        80 HYALF--KHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEG-LGDRYPNQLSGGQRQRVALARALAVEPQVLLLDE  156 (237)
T ss_pred             Chhhc--cCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHh-HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            86322  12233333321  1111    12345678899999964 5678889999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          174 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       174 Pt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      ||++||+.++..+.+.+.+.    +.|||++||+++++..+||++++|++|+++ +.|+.+++.
T Consensus       157 P~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~~  219 (237)
T TIGR00968       157 PFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIE-QIGSPDEVY  219 (237)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEE-EecCHHHHH
Confidence            99999999999988877653    579999999999999999999999999997 568877764

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=100.00  E-value=5e-46  Score=313.37  Aligned_cols=201  Identities=26%  Similarity=0.419  Sum_probs=158.5

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEEE
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVF   97 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~~   97 (239)
                      ++++|++++|+++..+|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++.           ..++|+
T Consensus         1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~   80 (236)
T cd03253           1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV   80 (236)
T ss_pred             CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence            468999999964456899999999999999999999999999999999999999999998763           248999


Q ss_pred             eeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCc----------ccccCCCCCCChHHHHHHHHHHHhccCCC
Q 026376           98 SQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG----------NLALQPMYTLSGGQKSRVAFAKITFKKPH  167 (239)
Q Consensus        98 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkqrv~laral~~~p~  167 (239)
                      +|++.. +  ..+...++...........+.+.++.+++.+          ...++++.+||||||||++|||||+.+|+
T Consensus        81 ~q~~~~-~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~  157 (236)
T cd03253          81 PQDTVL-F--NDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPP  157 (236)
T ss_pred             CCCChh-h--cchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence            998632 1  2345544432211222233333333333321          12345678999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          168 IILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       168 llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      +|||||||++||+.++..+.+.+.+.  +.|||++||+.+++.. ||++++|++|++. ..|+.+++.+
T Consensus       158 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~d~~~~l~~g~i~-~~~~~~~~~~  224 (236)
T cd03253         158 ILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN-ADKIIVLKDGRIV-ERGTHEELLA  224 (236)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh-CCEEEEEECCEEE-eeCCHHHHhh
Confidence            99999999999999999888877654  5699999999999975 9999999999997 5788776643

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.4e-46  Score=358.61  Aligned_cols=201  Identities=25%  Similarity=0.446  Sum_probs=173.8

Q ss_pred             eEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEE
Q 026376           28 IISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA   95 (239)
Q Consensus        28 ~l~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~   95 (239)
                      .++++||+|+|++ ++.+|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|.+++.           ..++
T Consensus       451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~  530 (686)
T TIGR03797       451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLG  530 (686)
T ss_pred             eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccE
Confidence            5999999999953 457999999999999999999999999999999999999999999998874           3699


Q ss_pred             EEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHhccC
Q 026376           96 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFKK  165 (239)
Q Consensus        96 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqrv~laral~~~  165 (239)
                      |++|++..   +..+..+++....+ .+.+++.++++..++.+....          .....||||||||++|||||+++
T Consensus       531 ~v~Q~~~l---f~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~  606 (686)
T TIGR03797       531 VVLQNGRL---MSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRK  606 (686)
T ss_pred             EEccCCcc---CcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence            99999753   34566677654333 667888999999888643321          22467999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          166 PHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       166 p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |++||||||||+||+.+.+.+.+.+.+.+.|+|+|||+++.+.. ||+|++|++|+++ ..|+++++.+
T Consensus       607 p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~-~D~Iivl~~G~iv-~~G~~~~Ll~  673 (686)
T TIGR03797       607 PRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRN-ADRIYVLDAGRVV-QQGTYDELMA  673 (686)
T ss_pred             CCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence            99999999999999999999999998888899999999999874 9999999999997 6899988754

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=100.00  E-value=3.5e-46  Score=312.13  Aligned_cols=189  Identities=24%  Similarity=0.329  Sum_probs=154.1

Q ss_pred             eEEEEeeEEEcCC------CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEec--C---c-----
Q 026376           28 IISFSDASFGYPG------GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS--A---K-----   91 (239)
Q Consensus        28 ~l~~~~l~~~y~~------~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~--~---~-----   91 (239)
                      ||+++|++++|++      +..+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++  +   .     
T Consensus         1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~   80 (224)
T TIGR02324         1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS   80 (224)
T ss_pred             CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence            4789999999952      1368999999999999999999999999999999999999999999886  2   1     


Q ss_pred             ---------eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHH
Q 026376           92 ---------VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV  156 (239)
Q Consensus        92 ---------~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv  156 (239)
                               ..++|++|++...  ...+..+++..  .....    ..+++.++++.+++.+...++++.+||||||||+
T Consensus        81 ~~~~~~~~~~~i~~~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl  158 (224)
T TIGR02324        81 PREVLEVRRKTIGYVSQFLRVI--PRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRV  158 (224)
T ss_pred             HHHHHHHHhcceEEEecccccC--CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHH
Confidence                     2489999986422  22233333221  11111    1346778899999975445678999999999999


Q ss_pred             HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEe
Q 026376          157 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVS  218 (239)
Q Consensus       157 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~  218 (239)
                      +|||||+.+|++|||||||++||+.++..+.+.+++.   +.|||++|||.+++..+||+++.+.
T Consensus       159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~~  223 (224)
T TIGR02324       159 NIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDVT  223 (224)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEecC
Confidence            9999999999999999999999999999888877653   5699999999999999999998763

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.9e-46  Score=314.64  Aligned_cols=202  Identities=23%  Similarity=0.315  Sum_probs=161.8

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC--C---CceeEEecCc---------
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ--P---SSGTVFRSAK---------   91 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~--p---~~G~i~~~~~---------   91 (239)
                      +++|+++|++++|+ ++.+|+|+||+|.+||+++|+|+||||||||+++|+|+.+  |   ++|+|.+++.         
T Consensus         3 ~~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~   81 (252)
T PRK14255          3 KKIITSSDVHLFYG-KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV   81 (252)
T ss_pred             cceEEEEeEEEEEC-CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence            45899999999995 4579999999999999999999999999999999999875  5   5899987653         


Q ss_pred             ----eEEEEEeeccCCCCCCCCcHHHHHHH--hCCC--Cc---HHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 026376           92 ----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG--VP---EQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA  157 (239)
Q Consensus        92 ----~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~--~~---~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~  157 (239)
                          ..++|++|++.. +.  .+...++..  ....  ..   .+++.++++.+++..   ...++++.+||||||||++
T Consensus        82 ~~~~~~i~~~~q~~~~-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~  158 (252)
T PRK14255         82 VQLRKQVGMVFQQPNP-FP--FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVC  158 (252)
T ss_pred             HHhcCeEEEEECCCcc-CC--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHH
Confidence                248999998632 12  244433321  1111  11   234566777777631   2346788999999999999


Q ss_pred             HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376          158 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       158 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                      |||||+.+|++|||||||++||+.++..+.+.|.+.  +.|||+||||++++.++||++++|++|+++ ..|++.+.
T Consensus       159 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~  234 (252)
T PRK14255        159 IARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLI-EFADTKQM  234 (252)
T ss_pred             HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence            999999999999999999999999999988887654  469999999999999999999999999997 45666554

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.1e-46  Score=315.83  Aligned_cols=201  Identities=20%  Similarity=0.254  Sum_probs=162.9

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCceeEEecCc------------
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK------------   91 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~------------   91 (239)
                      -+++|++++|+ ++.+|+|+||+|.+||+++|+|+||||||||+++|+|+.+     |++|+|.+++.            
T Consensus         6 ~~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~   84 (251)
T PRK14244          6 ASVKNLNLWYG-SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLL   84 (251)
T ss_pred             EEeeeEEEEEC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHH
Confidence            47899999995 4578999999999999999999999999999999999986     47999988652            


Q ss_pred             -eEEEEEeeccCCCCCCCCcHHHHHHH--hCCC------CcHHHHHHHHHhcCCCcc---cccCCCCCCChHHHHHHHHH
Q 026376           92 -VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPG------VPEQKLRAHLGSFGVTGN---LALQPMYTLSGGQKSRVAFA  159 (239)
Q Consensus        92 -~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~------~~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~la  159 (239)
                       ..++|++|++... .  .+...++..  ....      ...+.+.++++.+++.+.   ..++++.+||||||||++||
T Consensus        85 ~~~i~~v~q~~~~~-~--~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la  161 (251)
T PRK14244         85 RAKVGMVFQKPNPF-P--KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIA  161 (251)
T ss_pred             hhhEEEEecCcccc-c--CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHH
Confidence             2489999986321 1  233333321  1111      112346678999998531   34567899999999999999


Q ss_pred             HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          160 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       160 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |||+.+|++|||||||++||+.++..+.+.|++.  +.|||++|||++++..+||++++|++|+++ +.|+++++.+
T Consensus       162 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~  237 (251)
T PRK14244        162 RAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIV-EYNTTQEIFK  237 (251)
T ss_pred             HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEE-EeCCHHHHhc
Confidence            9999999999999999999999999888887654  569999999999999999999999999997 5688877643

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7e-46  Score=317.82  Aligned_cols=203  Identities=21%  Similarity=0.229  Sum_probs=164.0

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCceeEEecCc---------
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK---------   91 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~---------   91 (239)
                      .++|+++|++++|+ +..+|+|+||+|++||+++|+|+||||||||+++|+|+++     |++|+|.+++.         
T Consensus         8 ~~~l~i~~v~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   86 (264)
T PRK14243          8 ETVLRTENLNVYYG-SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP   86 (264)
T ss_pred             ceEEEEeeeEEEEC-CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence            35899999999995 4578999999999999999999999999999999999986     48999987652         


Q ss_pred             ----eEEEEEeeccCCCCCCCCcHHHHHHHh--CCC---CcHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHH
Q 026376           92 ----VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPG---VPEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFA  159 (239)
Q Consensus        92 ----~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~la  159 (239)
                          ..++|++|++.. +.  .+...++...  ...   ...+++.++++.+++..   ...++++.+||||||||++||
T Consensus        87 ~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~la  163 (264)
T PRK14243         87 VEVRRRIGMVFQKPNP-FP--KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIA  163 (264)
T ss_pred             HHHhhhEEEEccCCcc-cc--ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHH
Confidence                248999998632 11  2444443211  111   11234566777777632   234678899999999999999


Q ss_pred             HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEe---------CCeEEeeCCC
Q 026376          160 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVS---------EGKATPFHGT  228 (239)
Q Consensus       160 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~---------~G~i~~~~g~  228 (239)
                      |||+.+|++|||||||++||+.++..+.+.+.++  +.|||++|||++++.++||++++|+         +|+++ ..|+
T Consensus       164 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~-~~~~  242 (264)
T PRK14243        164 RAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLV-EFDR  242 (264)
T ss_pred             HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEE-EeCC
Confidence            9999999999999999999999999998888654  3699999999999999999999998         79997 6788


Q ss_pred             hhHHH
Q 026376          229 FHDYK  233 (239)
Q Consensus       229 ~~~~~  233 (239)
                      ++++.
T Consensus       243 ~~~~~  247 (264)
T PRK14243        243 TEKIF  247 (264)
T ss_pred             HHHHH
Confidence            87764

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=3.2e-46  Score=352.15  Aligned_cols=201  Identities=26%  Similarity=0.392  Sum_probs=170.4

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV   96 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~   96 (239)
                      -++++||++.|.+++++|+|+||+|++|++++|+||||||||||+++|+|++ |++|+|.+++.           ..++|
T Consensus       349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~  427 (588)
T PRK11174        349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSW  427 (588)
T ss_pred             eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEE
Confidence            4999999987655567999999999999999999999999999999999999 99999998873           36999


Q ss_pred             EeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhccCC
Q 026376           97 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKKP  166 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~~~p  166 (239)
                      ++|++..   +..+..+++....+..+++++.++++..++.+...          ......||||||||++|||||+++|
T Consensus       428 v~Q~~~L---F~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~  504 (588)
T PRK11174        428 VGQNPQL---PHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPC  504 (588)
T ss_pred             ecCCCcC---CCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCC
Confidence            9999752   34566777654334567788888888877653221          1234679999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          167 HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       167 ~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      ++||||||||+||.++.+.+.+.+.+.  ++|+|+|||+++.+. .||+|++|++|+++ ..|+++++.+
T Consensus       505 ~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~-~aD~Iivl~~G~i~-e~G~~~eL~~  572 (588)
T PRK11174        505 QLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLA-QWDQIWVMQDGQIV-QQGDYAELSQ  572 (588)
T ss_pred             CEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHH-hCCEEEEEeCCeEe-ecCCHHHHHh
Confidence            999999999999999999999988765  569999999999886 59999999999997 6899888754

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=4.2e-46  Score=346.80  Aligned_cols=203  Identities=22%  Similarity=0.311  Sum_probs=164.9

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCc--CCCceeEEecC----------------
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--QPSSGTVFRSA----------------   90 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~--~p~~G~i~~~~----------------   90 (239)
                      |+++|++++|+ ++.+|+++||+|.+|++++|+||||||||||+|+|+|++  +|++|+|.+++                
T Consensus         1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g   79 (520)
T TIGR03269         1 IEVKNLTKKFD-GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG   79 (520)
T ss_pred             CEEEEEEEEEC-CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence            47899999995 457999999999999999999999999999999999997  79999998751                


Q ss_pred             ----------------------------ceEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCC
Q 026376           91 ----------------------------KVRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGV  136 (239)
Q Consensus        91 ----------------------------~~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l  136 (239)
                                                  +..++|++|++...+ ...+...++..  .....    ..+++.++++.+++
T Consensus        80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl  158 (520)
T TIGR03269        80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALY-GDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL  158 (520)
T ss_pred             cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccC-CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence                                        124899999732111 11233333321  11111    13467789999999


Q ss_pred             CcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcC
Q 026376          137 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVE  212 (239)
Q Consensus       137 ~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d  212 (239)
                      .+ ..++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.+.+    .+.|||+||||++++..+||
T Consensus       159 ~~-~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d  237 (520)
T TIGR03269       159 SH-RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSD  237 (520)
T ss_pred             hh-hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcC
Confidence            64 56788999999999999999999999999999999999999999998776654    35699999999999999999


Q ss_pred             eEEEEeCCeEEeeCCChhHHHHH
Q 026376          213 ELWVVSEGKATPFHGTFHDYKKM  235 (239)
Q Consensus       213 ~i~~l~~G~i~~~~g~~~~~~~~  235 (239)
                      ++++|++|+++ +.|+++++.+.
T Consensus       238 ~i~~l~~G~i~-~~g~~~~~~~~  259 (520)
T TIGR03269       238 KAIWLENGEIK-EEGTPDEVVAV  259 (520)
T ss_pred             EEEEEeCCEEe-eecCHHHHHHH
Confidence            99999999997 57898887654

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=100.00  E-value=1.3e-46  Score=305.09  Aligned_cols=173  Identities=33%  Similarity=0.555  Sum_probs=142.8

Q ss_pred             EEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCC
Q 026376           30 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSS  109 (239)
Q Consensus        30 ~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~  109 (239)
                      +++|++++|++ ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++...         ...    
T Consensus         1 ~~~~l~~~~~~-~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~---------~~~----   66 (180)
T cd03214           1 EVENLSVGYGG-RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDL---------ASL----   66 (180)
T ss_pred             CeeEEEEEECC-eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC---------CcC----
Confidence            47899999954 5699999999999999999999999999999999999999999998876310         000    


Q ss_pred             cHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 026376          110 NPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQG  189 (239)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~  189 (239)
                      .... ....     -..+.++++.+++.+ ..++++.+||||||||++|||||+.+|+++||||||++||+.++..+.+.
T Consensus        67 ~~~~-~~~~-----i~~~~q~l~~~gl~~-~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~  139 (180)
T cd03214          67 SPKE-LARK-----IAYVPQALELLGLAH-LADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLEL  139 (180)
T ss_pred             CHHH-HHHH-----HhHHHHHHHHcCCHh-HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence            0000 0000     001112788899874 45678899999999999999999999999999999999999999988887


Q ss_pred             Hhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376          190 LVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       190 l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~  223 (239)
                      +.+.    +.|||++||+++++..+||++++|++|++.
T Consensus       140 l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~  177 (180)
T cd03214         140 LRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIV  177 (180)
T ss_pred             HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            7643    569999999999999999999999999986

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=100.00  E-value=4.7e-46  Score=298.12  Aligned_cols=164  Identities=26%  Similarity=0.374  Sum_probs=143.0

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCC
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLS  108 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~  108 (239)
                      ++++|++++|++++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++...++|++|++..   ..
T Consensus         1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~---~~   77 (166)
T cd03223           1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYL---PL   77 (166)
T ss_pred             CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCcc---cc
Confidence            468999999964456999999999999999999999999999999999999999999999887889999998631   12


Q ss_pred             CcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH
Q 026376          109 SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ  188 (239)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~  188 (239)
                      .+..+++..                 .        ++.+||||||||++|||||+.+|+++||||||++||+.++..+.+
T Consensus        78 ~tv~~nl~~-----------------~--------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~  132 (166)
T cd03223          78 GTLREQLIY-----------------P--------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ  132 (166)
T ss_pred             ccHHHHhhc-----------------c--------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHH
Confidence            233333210                 0        357999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCe
Q 026376          189 GLVLFQGGILMVSHDEHLISGSVEELWVVSEGK  221 (239)
Q Consensus       189 ~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~  221 (239)
                      .+.+.+.|+|++|||.++. .+||++++|+++.
T Consensus       133 ~l~~~~~tiiivsh~~~~~-~~~d~i~~l~~~~  164 (166)
T cd03223         133 LLKELGITVISVGHRPSLW-KFHDRVLDLDGEG  164 (166)
T ss_pred             HHHHhCCEEEEEeCChhHH-hhCCEEEEEcCCC
Confidence            9988888999999999876 5899999998764

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.5e-46  Score=339.65  Aligned_cols=201  Identities=28%  Similarity=0.435  Sum_probs=171.3

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV   96 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~   96 (239)
                      .++++|+++.|++++++++|+||++++|+.++|+|+||||||||+++|+|+.+|++|+|.+++.           ..++|
T Consensus       320 ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~  399 (559)
T COG4988         320 EISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISW  399 (559)
T ss_pred             eeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeee
Confidence            3556699999987768999999999999999999999999999999999999999999999873           35999


Q ss_pred             EeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc-----C----CCCCCChHHHHHHHHHHHhccCCC
Q 026376           97 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-----Q----PMYTLSGGQKSRVAFAKITFKKPH  167 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~----~~~~LSgGqkqrv~laral~~~p~  167 (239)
                      ++|+++.   +..+..+++....+..+++++.++++..++.+....     .    ....|||||+|||++||||+.+++
T Consensus       400 v~Q~p~l---f~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~  476 (559)
T COG4988         400 VSQNPYL---FAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPAS  476 (559)
T ss_pred             eCCCCcc---ccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCC
Confidence            9999853   344556666544455678889999999888654332     1    234599999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          168 IILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       168 llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      ++||||||+|||.++.+.+.+.+.+.  ++|+|++||++..+.. ||+|++|++|+++ ..|+++++.
T Consensus       477 l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~-~D~I~vld~G~l~-~~g~~~~L~  542 (559)
T COG4988         477 LLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAAD-ADRIVVLDNGRLV-EQGTHEELS  542 (559)
T ss_pred             EEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhc-CCEEEEecCCcee-ccCCHHHHh
Confidence            99999999999999999988888654  5799999999999975 9999999999997 689888764

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=3.8e-46  Score=339.30  Aligned_cols=207  Identities=21%  Similarity=0.320  Sum_probs=173.8

Q ss_pred             CeEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCC----ceeEEecCc--------
Q 026376           27 PIISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS----SGTVFRSAK--------   91 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~----~G~i~~~~~--------   91 (239)
                      ++|+++||++.|...   ..+++||||+|.+||++||+|+|||||||+.++|+|++++.    +|+|.++++        
T Consensus         4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~   83 (539)
T COG1123           4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER   83 (539)
T ss_pred             ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence            489999999999532   25899999999999999999999999999999999999987    899988774        


Q ss_pred             -------eEEEEEeeccCCCCCCCCcHHHHH---HHhCC----CCcHHHHHHHHHhcCCCcccc-cCCCCCCChHHHHHH
Q 026376           92 -------VRIAVFSQHHVDGLDLSSNPLLYM---MRCFP----GVPEQKLRAHLGSFGVTGNLA-LQPMYTLSGGQKSRV  156 (239)
Q Consensus        92 -------~~~~~~~q~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~l~~~~l~~~~~-~~~~~~LSgGqkqrv  156 (239)
                             ..++|+||++...++...+.-..+   .....    ....+++.++|+.+++.+... ++++++|||||||||
T Consensus        84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv  163 (539)
T COG1123          84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV  163 (539)
T ss_pred             HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence                   369999999876665543332222   22222    123567888999999986554 358999999999999


Q ss_pred             HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376          157 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       157 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                      .||+||+.+|++||+||||++||+..+.++++.|++    .+.++|+||||+..+.++||||++|++|+++ ..|+++++
T Consensus       164 ~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iV-E~G~~~~i  242 (539)
T COG1123         164 MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIV-ETGPTEEI  242 (539)
T ss_pred             HHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEE-EecCHHHH
Confidence            999999999999999999999999999998887764    3568999999999999999999999999998 57888876


Q ss_pred             HH
Q 026376          233 KK  234 (239)
Q Consensus       233 ~~  234 (239)
                      .+
T Consensus       243 ~~  244 (539)
T COG1123         243 LS  244 (539)
T ss_pred             Hh
Confidence            54

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=100.00  E-value=5e-46  Score=313.80  Aligned_cols=185  Identities=27%  Similarity=0.363  Sum_probs=149.2

Q ss_pred             EEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEEEEeeccCCCC
Q 026376           36 FGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVFSQHHVDGL  105 (239)
Q Consensus        36 ~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~~~~q~~~~~~  105 (239)
                      +.| +.+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.          ..++|++|+.. .+
T Consensus        29 ~~~-~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~-~~  106 (236)
T cd03267          29 RKY-REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKT-QL  106 (236)
T ss_pred             ccc-CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCcc-cc
Confidence            455 3456999999999999999999999999999999999999999999988763          25788874421 11


Q ss_pred             CCCCcHHHHHH--HhCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 026376          106 DLSSNPLLYMM--RCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD  179 (239)
Q Consensus       106 ~~~~~~~~~~~--~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD  179 (239)
                      ....+..+++.  ......    ..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||++||
T Consensus       107 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD  185 (236)
T cd03267         107 WWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEE-LLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD  185 (236)
T ss_pred             CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence            12223333221  111111    1235677889999964 4578889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376          180 LDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       180 ~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~  223 (239)
                      +.++..+.+.+.++    +.|||+||||++++..+||++++|++|+++
T Consensus       186 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~  233 (236)
T cd03267         186 VVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLL  233 (236)
T ss_pred             HHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEE
Confidence            99999998887654    469999999999999999999999999986

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.7e-46  Score=345.64  Aligned_cols=200  Identities=18%  Similarity=0.295  Sum_probs=163.6

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC--CceeEEecCc------------eE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP--SSGTVFRSAK------------VR   93 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~~------------~~   93 (239)
                      +|+++|++++|+ +..+|+|+||++++||+++|+||||||||||+++|+|+++|  ++|+|.+++.            ..
T Consensus         1 ~l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~   79 (500)
T TIGR02633         1 LLEMKGIVKTFG-GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG   79 (500)
T ss_pred             CEEEEeEEEEeC-CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence            478999999995 45799999999999999999999999999999999999987  7999998762            24


Q ss_pred             EEEEeeccCCCCCCCCcHHHHHHHh--CC--C--C----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 026376           94 IAVFSQHHVDGLDLSSNPLLYMMRC--FP--G--V----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF  163 (239)
Q Consensus        94 ~~~~~q~~~~~~~~~~~~~~~~~~~--~~--~--~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~  163 (239)
                      ++|++|++..  ....+..+++...  ..  .  .    ..+++.++++.+++.....++++.+|||||||||+|||||+
T Consensus        80 i~~v~q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~  157 (500)
T TIGR02633        80 IVIIHQELTL--VPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALN  157 (500)
T ss_pred             EEEEeecccc--CCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHh
Confidence            8999998632  2223444433211  10  0  1    12457789999999754345778999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhH
Q 026376          164 KKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD  231 (239)
Q Consensus       164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~  231 (239)
                      .+|++|||||||+|||+.++..+.+.|++   .+.|||+||||++++..+||++++|++|+++ ..+++++
T Consensus       158 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~-~~~~~~~  227 (500)
T TIGR02633       158 KQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHV-ATKDMST  227 (500)
T ss_pred             hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEe-eecCccc
Confidence            99999999999999999999998887654   3569999999999999999999999999986 4565544

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-45  Score=315.67  Aligned_cols=202  Identities=21%  Similarity=0.226  Sum_probs=164.3

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCC-----ceeEEecCc-----------
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-----SGTVFRSAK-----------   91 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~-----~G~i~~~~~-----------   91 (239)
                      +|+++|++++|+ +..+|+|+||+|++||+++|+|+||||||||+++|+|+++|+     +|+|.+++.           
T Consensus         7 ~l~~~nl~~~~~-~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~   85 (261)
T PRK14258          7 AIKVNNLSFYYD-TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNR   85 (261)
T ss_pred             eEEEeeEEEEeC-CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHH
Confidence            699999999995 456899999999999999999999999999999999999985     788876542           


Q ss_pred             --eEEEEEeeccCCCCCCCCcHHHHHHHh--CCCC-----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHH
Q 026376           92 --VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGV-----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFA  159 (239)
Q Consensus        92 --~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~la  159 (239)
                        ..++|++|++.. +.  .+..+++...  ....     ...++.++++.+++.+   ...++++.+||||||||++||
T Consensus        86 ~~~~i~~~~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la  162 (261)
T PRK14258         86 LRRQVSMVHPKPNL-FP--MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIA  162 (261)
T ss_pred             hhccEEEEecCCcc-Cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHH
Confidence              248899998532 22  3444433211  1111     1235677888888742   235678899999999999999


Q ss_pred             HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeC-----CeEEeeCCChh
Q 026376          160 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSE-----GKATPFHGTFH  230 (239)
Q Consensus       160 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~-----G~i~~~~g~~~  230 (239)
                      |||+.+|++|||||||++||+.++..+.+.+.+    .+.|||+||||++++.++||++++|++     |+++ ..|+++
T Consensus       163 ral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~-~~~~~~  241 (261)
T PRK14258        163 RALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV-EFGLTK  241 (261)
T ss_pred             HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE-EeCCHH
Confidence            999999999999999999999999988887764    267999999999999999999999999     9997 678888


Q ss_pred             HHHH
Q 026376          231 DYKK  234 (239)
Q Consensus       231 ~~~~  234 (239)
                      ++.+
T Consensus       242 ~~~~  245 (261)
T PRK14258        242 KIFN  245 (261)
T ss_pred             HHHh
Confidence            7643

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=100.00  E-value=8e-46  Score=305.38  Aligned_cols=185  Identities=22%  Similarity=0.375  Sum_probs=155.4

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEEEEe
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVFS   98 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~~~~   98 (239)
                      |+++|+++.|+ ++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++.          ..++|++
T Consensus         1 l~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~   79 (201)
T cd03231           1 LEADELTCERD-GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG   79 (201)
T ss_pred             CEEEEEEEEeC-CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence            47899999995 457899999999999999999999999999999999999999999987653          2589999


Q ss_pred             eccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 026376           99 QHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL  178 (239)
Q Consensus        99 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~L  178 (239)
                      |++..  ....+..+++.........+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||++|
T Consensus        80 q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~L  156 (201)
T cd03231          80 HAPGI--KTTLSVLENLRFWHADHSDEQVEEALARVGLNG-FEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTAL  156 (201)
T ss_pred             ccccc--CCCcCHHHHHHhhcccccHHHHHHHHHHcCChh-hhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence            87532  223344444432211224567888999999974 457889999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEE
Q 026376          179 DLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVV  217 (239)
Q Consensus       179 D~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l  217 (239)
                      |+.++..+.+.+.+.   +.|+|++|||...+..+|++++++
T Consensus       157 D~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~  198 (201)
T cd03231         157 DKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL  198 (201)
T ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence            999999998887653   679999999999888899999877

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=100.00  E-value=1.2e-45  Score=308.18  Aligned_cols=194  Identities=23%  Similarity=0.361  Sum_probs=158.8

Q ss_pred             EEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376           29 ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV   96 (239)
Q Consensus        29 l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~   96 (239)
                      ++++|++++|++. +.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.           ..++|
T Consensus         3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   82 (221)
T cd03244           3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI   82 (221)
T ss_pred             EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEE
Confidence            7899999999643 46999999999999999999999999999999999999999999988763           25899


Q ss_pred             EeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHhccCC
Q 026376           97 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITFKKP  166 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqrv~laral~~~p  166 (239)
                      ++|++..   +..+..+++.. .......++.++++.+++.+..          .++++..||+|||||++|||||+.+|
T Consensus        83 ~~q~~~l---~~~tv~enl~~-~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p  158 (221)
T cd03244          83 IPQDPVL---FSGTIRSNLDP-FGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS  158 (221)
T ss_pred             ECCCCcc---ccchHHHHhCc-CCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence            9998642   12344444421 1123345566677777664322          13578999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCC
Q 026376          167 HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGT  228 (239)
Q Consensus       167 ~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~  228 (239)
                      +++||||||++||+.++..+.+.+++.  +.|||++||+++++.. ||++++|++|+++ ..|+
T Consensus       159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~-~~~~  220 (221)
T cd03244         159 KILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-SDRILVLDKGRVV-EFDS  220 (221)
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCeEE-ecCC
Confidence            999999999999999999998888764  4699999999999975 9999999999996 4454

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=100.00  E-value=1.3e-45  Score=307.98  Aligned_cols=190  Identities=26%  Similarity=0.363  Sum_probs=156.1

Q ss_pred             EEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------------
Q 026376           29 ISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------   91 (239)
Q Consensus        29 l~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------   91 (239)
                      ++++|+++.|+++   ..+|+++||++.+|++++|+|+||||||||+++|+|+++|++|+|.+++.              
T Consensus         2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (220)
T TIGR02982         2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR   81 (220)
T ss_pred             EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence            7899999999532   56999999999999999999999999999999999999999999988653              


Q ss_pred             eEEEEEeeccCCCCCCCCcHHHHHH--H-hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 026376           92 VRIAVFSQHHVDGLDLSSNPLLYMM--R-CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK  164 (239)
Q Consensus        92 ~~~~~~~q~~~~~~~~~~~~~~~~~--~-~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~  164 (239)
                      ..++|++|++....  ..+..+++.  . .....    ...++.++++.+++.+ ..++++.+||+|||||++|||||+.
T Consensus        82 ~~i~~~~q~~~~~~--~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~lS~G~~qrv~laral~~  158 (220)
T TIGR02982        82 RNIGYIFQAHNLLG--FLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGD-HLDYYPHNLSGGQKQRVAIARALVH  158 (220)
T ss_pred             hheEEEcCChhhcC--CCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChh-hhhcChhhCCHHHHHHHHHHHHHhc
Confidence            24899999864222  223333322  1 11111    1345788999999964 5577889999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeE
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKA  222 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i  222 (239)
                      +|++|||||||++||+.++..+.+.|+++    +.|||++|||++.. .+||++++|++|++
T Consensus       159 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~g~~  219 (220)
T TIGR02982       159 RPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-DVADRIVHMEDGKL  219 (220)
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEEEEECCEE
Confidence            99999999999999999998887777542    57999999999865 69999999999985

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=100.00  E-value=6.3e-46  Score=306.58  Aligned_cols=182  Identities=25%  Similarity=0.377  Sum_probs=149.4

Q ss_pred             EEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce---------------EEE
Q 026376           31 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV---------------RIA   95 (239)
Q Consensus        31 ~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~---------------~~~   95 (239)
                      ++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++..               .++
T Consensus         1 i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~   79 (206)
T TIGR03608         1 LKNISKKFG-DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG   79 (206)
T ss_pred             CcceEEEEC-CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence            478999995 4579999999999999999999999999999999999999999999876532               489


Q ss_pred             EEeeccCCCCCCCCcHHHHHHH--hCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 026376           96 VFSQHHVDGLDLSSNPLLYMMR--CFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII  169 (239)
Q Consensus        96 ~~~q~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ll  169 (239)
                      |++|++...  ...+..+++..  ....    ...+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|
T Consensus        80 ~~~q~~~~~--~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~lS~G~~qr~~laral~~~p~ll  156 (206)
T TIGR03608        80 YLFQNFALI--ENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNL-KLKQKIYELSGGEQQRVALARAILKDPPLI  156 (206)
T ss_pred             EEecchhhc--cCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchh-hhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence            999986422  22233333221  1111    12356788999999964 557888999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEE
Q 026376          170 LLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVV  217 (239)
Q Consensus       170 llDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l  217 (239)
                      ||||||++||+.++..+.+.+++.   +.|||++||+++++. +||++++|
T Consensus       157 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~i~~l  206 (206)
T TIGR03608       157 LADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAK-QADRVIEL  206 (206)
T ss_pred             EEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh-hcCEEEeC
Confidence            999999999999999998888654   569999999999774 79999875

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-45  Score=312.84  Aligned_cols=203  Identities=19%  Similarity=0.238  Sum_probs=163.6

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC--C---CceeEEecCc---------
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ--P---SSGTVFRSAK---------   91 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~--p---~~G~i~~~~~---------   91 (239)
                      .++|+++|++++|+ ++.+|+|+||+|.+||+++|+||||||||||+++|+|+.+  |   ++|+|.+++.         
T Consensus         4 ~~~i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~   82 (253)
T PRK14261          4 EIILSTKNLNLWYG-EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV   82 (253)
T ss_pred             cceEEEeeeEEEEC-CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence            45899999999995 4579999999999999999999999999999999999976  3   4899987652         


Q ss_pred             ----eEEEEEeeccCCCCCCCCcHHHHHHH---hCCCC----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHH
Q 026376           92 ----VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGV----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVA  157 (239)
Q Consensus        92 ----~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~  157 (239)
                          ..++|++|++.. +.  .+..+++..   .....    ....+.++++.+++.+   ...++++.+||||||||++
T Consensus        83 ~~~~~~i~~~~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~  159 (253)
T PRK14261         83 VALRRKIGMVFQRPNP-FP--KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLC  159 (253)
T ss_pred             hhhhceEEEEecCCcc-Cc--ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHH
Confidence                248999998642 12  244443321   11111    1234667788887742   2246788999999999999


Q ss_pred             HHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          158 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       158 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      |||||+.+|+++||||||+|||+.++..+.+.+.+.  +.|||++|||++++..+||++++|++|+++ ..|+++++.
T Consensus       160 laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~  236 (253)
T PRK14261        160 IARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLI-EFDKTTQIF  236 (253)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEE-EcCCHHHHH
Confidence            999999999999999999999999999888877654  469999999999999999999999999997 578877764

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=2.4e-47  Score=300.86  Aligned_cols=202  Identities=23%  Similarity=0.297  Sum_probs=168.2

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------------
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------   91 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------   91 (239)
                      +.|+++|+.++|+ ...+|++||++-++|+++.|||.+||||||+||||+=+..|+.|.|..++.               
T Consensus         5 ~~l~v~dlHK~~G-~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a   83 (256)
T COG4598           5 NALEVEDLHKRYG-EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA   83 (256)
T ss_pred             cceehhHHHhhcc-cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence            4689999999994 556899999999999999999999999999999999999999999987652               


Q ss_pred             ---------eEEEEEeeccCCCCCCCCcHHHHHHHh-------CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHH
Q 026376           92 ---------VRIAVFSQHHVDGLDLSSNPLLYMMRC-------FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR  155 (239)
Q Consensus        92 ---------~~~~~~~q~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr  155 (239)
                               .+++++||++..  ....+.+++....       ......++++.+|.++|+.+ ..+.++..|||||+||
T Consensus        84 d~~q~~r~Rs~L~mVFQ~FNL--WsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~e-k~~~YP~~LSGGQQQR  160 (256)
T COG4598          84 DKRQLQRLRTRLGMVFQHFNL--WSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAE-KADAYPAHLSGGQQQR  160 (256)
T ss_pred             CHHHHHHHHHHhhHhhhhcch--hHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchh-hhhcCccccCchHHHH
Confidence                     247888887521  1123444444321       11223466788999999975 4568889999999999


Q ss_pred             HHHHHHhccCCCEEEEeCCCCCCCHHHHHHH---HHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376          156 VAFAKITFKKPHIILLDEPSNHLDLDAVEAL---IQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       156 v~laral~~~p~llllDEPt~~LD~~~~~~l---~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                      ++|||||+.+|+++|+|||||+|||+-..++   ++.|.+.+.|+++|||.+.|+..+++++++|++|.+. ..|+|+++
T Consensus       161 ~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iE-E~G~P~qv  239 (256)
T COG4598         161 VAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIE-EEGPPEQV  239 (256)
T ss_pred             HHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceec-ccCChHHH
Confidence            9999999999999999999999999976554   5566777899999999999999999999999999995 78999886


Q ss_pred             H
Q 026376          233 K  233 (239)
Q Consensus       233 ~  233 (239)
                      .
T Consensus       240 f  240 (256)
T COG4598         240 F  240 (256)
T ss_pred             h
Confidence            4

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=100.00  E-value=9e-46  Score=311.03  Aligned_cols=189  Identities=24%  Similarity=0.366  Sum_probs=153.5

Q ss_pred             eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC----CceeEEecCc---------eEEEEEeeccCCCCCCCCc
Q 026376           44 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP----SSGTVFRSAK---------VRIAVFSQHHVDGLDLSSN  110 (239)
Q Consensus        44 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p----~~G~i~~~~~---------~~~~~~~q~~~~~~~~~~~  110 (239)
                      +|+|+||+|++|++++|+||||||||||+++|+|+++|    ++|+|.+++.         ..++|++|++...+....+
T Consensus         1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t   80 (230)
T TIGR02770         1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT   80 (230)
T ss_pred             CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence            47899999999999999999999999999999999999    8999998763         3689999986311222222


Q ss_pred             HHHHHH---HhCCC---CcHHHHHHHHHhcCCCc--ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH
Q 026376          111 PLLYMM---RCFPG---VPEQKLRAHLGSFGVTG--NLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA  182 (239)
Q Consensus       111 ~~~~~~---~~~~~---~~~~~~~~~l~~~~l~~--~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~  182 (239)
                      ...++.   .....   ...+++.++++.+++.+  ...++++.+|||||||||+|||||+.+|++|||||||++||+.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~  160 (230)
T TIGR02770        81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVN  160 (230)
T ss_pred             HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence            222211   11111   12345788999999963  34578899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          183 VEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       183 ~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      +..+.+.+.+.    +.|||++|||++++..+||++++|++|++. ..|+++++.
T Consensus       161 ~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~  214 (230)
T TIGR02770       161 QARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIV-ERGTVKEIF  214 (230)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence            98887777642    569999999999999999999999999997 678887764

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.6e-46  Score=342.96  Aligned_cols=193  Identities=26%  Similarity=0.362  Sum_probs=162.1

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEE
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI   94 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~   94 (239)
                      ++|+++|+++.|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++.            ..+
T Consensus         3 ~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i   81 (501)
T PRK11288          3 PYLSFDGIGKTFP-GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV   81 (501)
T ss_pred             ceEEEeeeEEEEC-CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence            4799999999995 456999999999999999999999999999999999999999999988652            248


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHhC----CC-C----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRCF----PG-V----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK  165 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~~----~~-~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~  165 (239)
                      +|++|++..  ....+...++....    .. .    ..+++.++++.+++.. ..++++.+|||||||||+|||||+.+
T Consensus        82 ~~v~q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~laral~~~  158 (501)
T PRK11288         82 AIIYQELHL--VPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI-DPDTPLKYLSIGQRQMVEIAKALARN  158 (501)
T ss_pred             EEEEechhc--cCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCC-CcCCchhhCCHHHHHHHHHHHHHHhC
Confidence            999998632  22234444432210    01 1    1346778999999964 45788999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376          166 PHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       166 p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~  223 (239)
                      |++|||||||++||+.++.++.+.+.+   .+.|||+||||++++..+||++++|++|+++
T Consensus       159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~  219 (501)
T PRK11288        159 ARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYV  219 (501)
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            999999999999999999998887764   3579999999999999999999999999986

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=1.1e-45  Score=305.76  Aligned_cols=186  Identities=28%  Similarity=0.384  Sum_probs=154.3

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce--------EEEEEee
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--------RIAVFSQ   99 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~--------~~~~~~q   99 (239)
                      +|+++|+++.|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++..        .++|++|
T Consensus         2 ~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   80 (207)
T PRK13539          2 MLEGEDLACVRG-GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGH   80 (207)
T ss_pred             EEEEEeEEEEEC-CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecC
Confidence            689999999995 4568999999999999999999999999999999999999999999987642        4788887


Q ss_pred             ccCCCCCCCCcHHHHHHH--hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 026376          100 HHVDGLDLSSNPLLYMMR--CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH  177 (239)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~  177 (239)
                      +...  ....+...++..  .......+++.++++.+++.. ..++++.+||||||||++|||||+.+|++|||||||++
T Consensus        81 ~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~  157 (207)
T PRK13539         81 RNAM--KPALTVAENLEFWAAFLGGEELDIAAALEAVGLAP-LAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAA  157 (207)
T ss_pred             CCcC--CCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHH-HHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence            6532  222344443321  111233456889999999975 55788999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeC
Q 026376          178 LDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSE  219 (239)
Q Consensus       178 LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~  219 (239)
                      ||+.++..+.+.|.+.   +.|||++||+.+++..  |+++.++.
T Consensus       158 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~~~~~~~~  200 (207)
T PRK13539        158 LDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG--ARELDLGP  200 (207)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--CcEEeecC
Confidence            9999999988877653   6799999999999986  99988854

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.9e-46  Score=301.41  Aligned_cols=203  Identities=27%  Similarity=0.405  Sum_probs=166.3

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV   96 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~   96 (239)
                      ||+.+|++++.. ++.+++++||++.+||+++|+||||||||||||.|+|...|++|++.+++.           ...+.
T Consensus         1 mi~a~nls~~~~-Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV   79 (259)
T COG4559           1 MIRAENLSYSLA-GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV   79 (259)
T ss_pred             CeeeeeeEEEee-cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence            588999999995 467999999999999999999999999999999999999999999998874           24788


Q ss_pred             EeeccCCCCCCCCcHHHHHHHhCC---C---CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc------
Q 026376           97 FSQHHVDGLDLSSNPLLYMMRCFP---G---VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK------  164 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~------  164 (239)
                      ++|+....|.++......+.+.-.   .   .+.+-++++|...++.+ +..+...+|||||||||.+||+|++      
T Consensus        80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~-la~R~y~~LSGGEqQRVqlARvLaQl~~~v~  158 (259)
T COG4559          80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSG-LAGRDYRTLSGGEQQRVQLARVLAQLWPPVP  158 (259)
T ss_pred             cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhh-hhccchhhcCchHHHHHHHHHHHHHccCCCC
Confidence            999876555544333333322111   1   12223678999999975 5678889999999999999999975      


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l~---~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      ++++|+||||||+||+..+..+++..+   +.+..|+.|-||++.+..+||||++|.+|+++ ..|++++..
T Consensus       159 ~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~-a~g~p~~vl  229 (259)
T COG4559         159 SGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVI-ASGSPQDVL  229 (259)
T ss_pred             CCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEe-ecCCHHHhc
Confidence            456999999999999998877766554   44678999999999999999999999999997 689887753

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-45  Score=313.77  Aligned_cols=202  Identities=22%  Similarity=0.235  Sum_probs=164.4

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-----CceeEEecCc----------
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK----------   91 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~----------   91 (239)
                      .+|+++|+++.|+ +..+|+|+||+|.+||+++|+|+||||||||+|+|+|+++|     ++|+|.+++.          
T Consensus         6 ~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~   84 (259)
T PRK14260          6 PAIKVKDLSFYYN-TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ   84 (259)
T ss_pred             ceEEEEEEEEEEC-CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence            3699999999995 45699999999999999999999999999999999999985     4899987653          


Q ss_pred             ---eEEEEEeeccCCCCCCCCcHHHHHHH---hC---CCC-cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHH
Q 026376           92 ---VRIAVFSQHHVDGLDLSSNPLLYMMR---CF---PGV-PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAF  158 (239)
Q Consensus        92 ---~~~~~~~q~~~~~~~~~~~~~~~~~~---~~---~~~-~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~l  158 (239)
                         ..++|++|++... .  .+..+++..   ..   ... ..+.+.++++.+++..   ...++++.+||||||||++|
T Consensus        85 ~~~~~i~~v~q~~~l~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l  161 (259)
T PRK14260         85 RLRRQIGMVFQRPNPF-P--MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCI  161 (259)
T ss_pred             hhhhheEEEecccccC-C--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHH
Confidence               2489999986422 2  344444321   11   111 1234667888888742   24567889999999999999


Q ss_pred             HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEe-----CCeEEeeCCChhH
Q 026376          159 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVS-----EGKATPFHGTFHD  231 (239)
Q Consensus       159 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~-----~G~i~~~~g~~~~  231 (239)
                      ||||+.+|++|||||||++||+.++..+.+.+.+.  +.|||++|||++++..+||++++|+     +|+++ ..|++++
T Consensus       162 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~-~~~~~~~  240 (259)
T PRK14260        162 ARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMV-EFGVTTQ  240 (259)
T ss_pred             HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEE-EeCCHHH
Confidence            99999999999999999999999999988888654  4699999999999999999999997     59997 6788887


Q ss_pred             HH
Q 026376          232 YK  233 (239)
Q Consensus       232 ~~  233 (239)
                      +.
T Consensus       241 ~~  242 (259)
T PRK14260        241 IF  242 (259)
T ss_pred             Hh
Confidence            64

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=1.2e-45  Score=347.29  Aligned_cols=203  Identities=24%  Similarity=0.418  Sum_probs=173.0

Q ss_pred             CeEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376           27 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI   94 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~   94 (239)
                      ..++++||+|+|+++ +.+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+++.           ..+
T Consensus       337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i  416 (574)
T PRK11160        337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAI  416 (574)
T ss_pred             CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhe
Confidence            469999999999653 46899999999999999999999999999999999999999999998874           259


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc---------CCCCCCChHHHHHHHHHHHhccC
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL---------QPMYTLSGGQKSRVAFAKITFKK  165 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---------~~~~~LSgGqkqrv~laral~~~  165 (239)
                      +|++|++..   +..+..+++....+..+++++.++++.+++.+....         .....||||||||++||||++++
T Consensus       417 ~~v~Q~~~l---f~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~  493 (574)
T PRK11160        417 SVVSQRVHL---FSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHD  493 (574)
T ss_pred             eEEcccchh---hcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence            999999742   334666666443344567889999999998754322         13567999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          166 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       166 p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |++|||||||++||+++.+.+.+.+.+.  ++|+|+|||+++.+. .||+|++|++|+++ ..|+++++.+
T Consensus       494 ~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~  562 (574)
T PRK11160        494 APLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLE-QFDRICVMDNGQII-EQGTHQELLA  562 (574)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHH-hCCEEEEEeCCeEE-EeCCHHHHHh
Confidence            9999999999999999999999988765  569999999999987 49999999999997 5799887653

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=100.00  E-value=1.6e-45  Score=288.42  Aligned_cols=144  Identities=44%  Similarity=0.768  Sum_probs=136.4

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCC
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLS  108 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~  108 (239)
                      ++++|++++|++ ..+++++||++++||+++|+||||||||||+++|+|+++|++|+|++++...++|++|         
T Consensus         1 l~~~~l~~~~~~-~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~---------   70 (144)
T cd03221           1 IELENLSKTYGG-KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ---------   70 (144)
T ss_pred             CEEEEEEEEECC-ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc---------
Confidence            468999999954 4699999999999999999999999999999999999999999999988778888887         


Q ss_pred             CcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH
Q 026376          109 SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ  188 (239)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~  188 (239)
                                                             ||+||+||++|||||+.+|+++||||||++||+.++..+.+
T Consensus        71 ---------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~  111 (144)
T cd03221          71 ---------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEE  111 (144)
T ss_pred             ---------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH
Confidence                                                   99999999999999999999999999999999999999999


Q ss_pred             HHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCe
Q 026376          189 GLVLFQGGILMVSHDEHLISGSVEELWVVSEGK  221 (239)
Q Consensus       189 ~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~  221 (239)
                      .+++.+.|||++||+.+++..+||++++|++|+
T Consensus       112 ~l~~~~~til~~th~~~~~~~~~d~v~~l~~g~  144 (144)
T cd03221         112 ALKEYPGTVILVSHDRYFLDQVATKIIELEDGK  144 (144)
T ss_pred             HHHHcCCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence            998888899999999999999999999999985

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.6e-45  Score=311.91  Aligned_cols=204  Identities=22%  Similarity=0.274  Sum_probs=164.2

Q ss_pred             CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-----CceeEEecCc--------
Q 026376           25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK--------   91 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~--------   91 (239)
                      ...+|+++|++++|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+.+|     ++|+|.+++.        
T Consensus        13 ~~~~l~~~~l~~~~~-~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~   91 (265)
T PRK14252         13 TQQKSEVNKLNFYYG-GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE   91 (265)
T ss_pred             CCceEEEEEEEEEEC-CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccc
Confidence            356799999999995 45799999999999999999999999999999999999875     7999987541        


Q ss_pred             -------eEEEEEeeccCCCCCCCCcHHHHHHHh--CCC-----CcHHHHHHHHHhcCCCc---ccccCCCCCCChHHHH
Q 026376           92 -------VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPG-----VPEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKS  154 (239)
Q Consensus        92 -------~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkq  154 (239)
                             ..++|++|++... .  .+..+++...  ...     ...+++.++++.+++..   ...++++.+|||||+|
T Consensus        92 ~~~~~~~~~i~~~~q~~~~~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q  168 (265)
T PRK14252         92 VDPIEVRMRISMVFQKPNPF-P--KSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQ  168 (265)
T ss_pred             cCHHHHhccEEEEccCCcCC-c--chHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHH
Confidence                   2489999986322 1  2343333211  111     11345667788777632   2346778999999999


Q ss_pred             HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376          155 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       155 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                      |++|||||+.+|++|||||||++||+.++..+.+.+.+.  +.|||+|||+++++..+||++++|++|++. ..|+.+++
T Consensus       169 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~  247 (265)
T PRK14252        169 RLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELI-EFGATDTI  247 (265)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence            999999999999999999999999999999888877654  469999999999999999999999999997 56777665


Q ss_pred             H
Q 026376          233 K  233 (239)
Q Consensus       233 ~  233 (239)
                      .
T Consensus       248 ~  248 (265)
T PRK14252        248 F  248 (265)
T ss_pred             H
Confidence            4

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.1e-46  Score=344.50  Aligned_cols=197  Identities=17%  Similarity=0.233  Sum_probs=161.1

Q ss_pred             CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------e
Q 026376           25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------V   92 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~   92 (239)
                      ++++|+++|+++.| +  .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|++++.            .
T Consensus       262 ~~~~l~~~~l~~~~-~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~  338 (510)
T PRK09700        262 HETVFEVRNVTSRD-R--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKK  338 (510)
T ss_pred             CCcEEEEeCccccC-C--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHC
Confidence            34589999999977 2  3799999999999999999999999999999999999999999998762            2


Q ss_pred             EEEEEeeccC-CCCCCCCcHHHHHHHh-------C----C--C--CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHH
Q 026376           93 RIAVFSQHHV-DGLDLSSNPLLYMMRC-------F----P--G--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV  156 (239)
Q Consensus        93 ~~~~~~q~~~-~~~~~~~~~~~~~~~~-------~----~--~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv  156 (239)
                      .++|++|++. ..+....+...++...       .    .  .  ....++.++++.+++.....++++.+|||||||||
T Consensus       339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv  418 (510)
T PRK09700        339 GMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKV  418 (510)
T ss_pred             CcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHH
Confidence            4899999741 1222223444433211       0    0  0  11234678999999963356789999999999999


Q ss_pred             HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEe
Q 026376          157 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATP  224 (239)
Q Consensus       157 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~  224 (239)
                      +|||||+.+|++|||||||++||+.++..+.+.|++   .+.|||+||||++++..+||++++|++|++..
T Consensus       419 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~  489 (510)
T PRK09700        419 LISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ  489 (510)
T ss_pred             HHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence            999999999999999999999999999988887754   36799999999999999999999999999863

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=100.00  E-value=1.5e-45  Score=353.50  Aligned_cols=205  Identities=27%  Similarity=0.415  Sum_probs=174.4

Q ss_pred             eEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEE
Q 026376           28 IISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA   95 (239)
Q Consensus        28 ~l~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~   95 (239)
                      .++++||+|+|++ .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++.           ..++
T Consensus       463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~  542 (694)
T TIGR03375       463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIG  542 (694)
T ss_pred             eEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccE
Confidence            5999999999964 356999999999999999999999999999999999999999999999873           3699


Q ss_pred             EEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHhccC
Q 026376           96 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFKK  165 (239)
Q Consensus        96 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqrv~laral~~~  165 (239)
                      |++|++..   +..+..+++....+..+.+++.++++.+++.+....          .....||||||||++|||||+++
T Consensus       543 ~v~Q~~~l---f~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~  619 (694)
T TIGR03375       543 YVPQDPRL---FYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRD  619 (694)
T ss_pred             EECCChhh---hhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence            99999742   345666666543334567888888888877543221          23467999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHHhh
Q 026376          166 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQ  237 (239)
Q Consensus       166 p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~  237 (239)
                      |++||||||||+||+++...+.+.+.+.  +.|+|+|||+++.+. .||+|++|++|+++ ..|+++++.++..
T Consensus       620 p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~-~~D~iivl~~G~i~-e~G~~~eLl~~~~  691 (694)
T TIGR03375       620 PPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLD-LVDRIIVMDNGRIV-ADGPKDQVLEALR  691 (694)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEEeCCEEE-eeCCHHHHHHHhh
Confidence            9999999999999999999999988765  579999999999885 69999999999997 6899999877654

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.9e-45  Score=318.61  Aligned_cols=204  Identities=20%  Similarity=0.233  Sum_probs=165.4

Q ss_pred             CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCceeEEecCc--------
Q 026376           25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK--------   91 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~--------   91 (239)
                      .+++|.++|++++|+ +..+|+++||+|.+||+++|+|+||||||||+++|+|+++     |++|+|.+++.        
T Consensus        42 ~~~~l~i~nl~~~~~-~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~  120 (305)
T PRK14264         42 GDAKLSVEDLDVYYG-DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN  120 (305)
T ss_pred             CCceEEEEEEEEEeC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence            456899999999995 4579999999999999999999999999999999999986     68999987652        


Q ss_pred             -----eEEEEEeeccCCCCCCCCcHHHHHHHh--C--------------C---CCcHHHHHHHHHhcCCCc---ccccCC
Q 026376           92 -----VRIAVFSQHHVDGLDLSSNPLLYMMRC--F--------------P---GVPEQKLRAHLGSFGVTG---NLALQP  144 (239)
Q Consensus        92 -----~~~~~~~q~~~~~~~~~~~~~~~~~~~--~--------------~---~~~~~~~~~~l~~~~l~~---~~~~~~  144 (239)
                           ..++|++|++.. +.  .+...++...  .              .   ....+.+.++++.+++..   ...+++
T Consensus       121 ~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~  197 (305)
T PRK14264        121 LVELRKRVGMVFQSPNP-FP--KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDN  197 (305)
T ss_pred             HHHHhhceEEEccCCcc-cc--ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCc
Confidence                 258999998632 11  2444333211  0              0   001345677888888742   234677


Q ss_pred             CCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeE-EEEeCCe
Q 026376          145 MYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEEL-WVVSEGK  221 (239)
Q Consensus       145 ~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i-~~l~~G~  221 (239)
                      +.+||||||||++|||||+.+|+||||||||+|||+.++..+.+.|+++  +.|||++|||++++..+||++ ++|++|+
T Consensus       198 ~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~  277 (305)
T PRK14264        198 ALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGE  277 (305)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCE
Confidence            8999999999999999999999999999999999999999998888765  469999999999999999996 5789999


Q ss_pred             EEeeCCChhHHH
Q 026376          222 ATPFHGTFHDYK  233 (239)
Q Consensus       222 i~~~~g~~~~~~  233 (239)
                      ++ ..|+++++.
T Consensus       278 i~-~~g~~~~~~  288 (305)
T PRK14264        278 LV-EYDDTDKIF  288 (305)
T ss_pred             EE-EeCCHHHHH
Confidence            97 578887764

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=100.00  E-value=1.9e-45  Score=353.33  Aligned_cols=204  Identities=26%  Similarity=0.424  Sum_probs=170.2

Q ss_pred             CeEEEEeeEEEcCC--CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eE
Q 026376           27 PIISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR   93 (239)
Q Consensus        27 ~~l~~~~l~~~y~~--~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~   93 (239)
                      ..++++||+|+|++  ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.           ..
T Consensus       477 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~  556 (711)
T TIGR00958       477 GLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQ  556 (711)
T ss_pred             CeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhh
Confidence            35999999999975  246999999999999999999999999999999999999999999999874           36


Q ss_pred             EEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhc
Q 026376           94 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITF  163 (239)
Q Consensus        94 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~  163 (239)
                      ++|++|++..   +..+..+++....+..+++++.++++..++.+...          .....+||||||||++||||++
T Consensus       557 i~~v~Q~~~l---F~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl  633 (711)
T TIGR00958       557 VALVGQEPVL---FSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALV  633 (711)
T ss_pred             ceEEecCccc---cccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHh
Confidence            9999999752   34566666653333456778888888887753221          1234579999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376          164 KKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  235 (239)
Q Consensus       164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  235 (239)
                      ++|+|||||||||+||.++...+.+.....++|+|+|||+++.+. .||+|++|++|+++ ..|+++++.+.
T Consensus       634 ~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~-~aD~IivL~~G~iv-e~Gt~~eL~~~  703 (711)
T TIGR00958       634 RKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVE-RADQILVLKKGSVV-EMGTHKQLMED  703 (711)
T ss_pred             cCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHH-hCCEEEEEECCEEE-EeeCHHHHHhC
Confidence            999999999999999999988888733334679999999999886 59999999999997 68999988653

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=5.6e-46  Score=344.47  Aligned_cols=206  Identities=19%  Similarity=0.263  Sum_probs=163.9

Q ss_pred             CCeEEEEeeEEEcCC--CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-CceeEEecCc-----------
Q 026376           26 PPIISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-SSGTVFRSAK-----------   91 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~--~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-~~G~i~~~~~-----------   91 (239)
                      +++|+++|+++.|++  +..+|+|+||+|.+||+++|+||||||||||+|+|+|+++| ++|+|.+++.           
T Consensus       255 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~  334 (500)
T TIGR02633       255 DVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAI  334 (500)
T ss_pred             CceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence            458999999999942  34689999999999999999999999999999999999995 8999998652           


Q ss_pred             -eEEEEEeeccC-CCCCCCCcHHHHHHH----hCC---CC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHH
Q 026376           92 -VRIAVFSQHHV-DGLDLSSNPLLYMMR----CFP---GV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF  158 (239)
Q Consensus        92 -~~~~~~~q~~~-~~~~~~~~~~~~~~~----~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~l  158 (239)
                       ..++|++|++. ..+....+...++..    ...   ..    ...++.++++.+++.....++++.+|||||||||+|
T Consensus       335 ~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~l  414 (500)
T TIGR02633       335 RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVL  414 (500)
T ss_pred             hCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHH
Confidence             24899999852 112222233332211    010   11    134578899999996434678999999999999999


Q ss_pred             HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376          159 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       159 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~---~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                      ||||+.+|++|||||||+|||+.++..+.+.+.   +.+.|||+||||++++.++||++++|++|+++ ...+.+++
T Consensus       415 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~-~~~~~~~~  490 (500)
T TIGR02633       415 AKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLK-GDFVNHAL  490 (500)
T ss_pred             HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEEccccC
Confidence            999999999999999999999999988776554   34679999999999999999999999999986 44544443

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=100.00  E-value=8.1e-45  Score=300.49  Aligned_cols=188  Identities=20%  Similarity=0.319  Sum_probs=154.4

Q ss_pred             CeEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376           27 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI   94 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~   94 (239)
                      ..++++|++++|++. ..+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++.           ..+
T Consensus         5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i   84 (207)
T cd03369           5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL   84 (207)
T ss_pred             CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence            469999999999642 46899999999999999999999999999999999999999999998763           359


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP  174 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEP  174 (239)
                      +|++|++.. +  ..+...++.. .......++.++++        .++++.+|||||+||++|||||+.+|+++|||||
T Consensus        85 ~~v~q~~~~-~--~~tv~~~l~~-~~~~~~~~~~~~l~--------~~~~~~~LS~G~~qrv~laral~~~p~llllDEP  152 (207)
T cd03369          85 TIIPQDPTL-F--SGTIRSNLDP-FDEYSDEEIYGALR--------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEA  152 (207)
T ss_pred             EEEecCCcc-c--CccHHHHhcc-cCCCCHHHHHHHhh--------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence            999998632 1  2344444422 11223334444444        2457899999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCC
Q 026376          175 SNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGT  228 (239)
Q Consensus       175 t~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~  228 (239)
                      |++||+.++..+.+.|++.  +.|+|++||+.+++.. ||++++|++|++. ..|+
T Consensus       153 ~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~-~d~v~~l~~g~i~-~~g~  206 (207)
T cd03369         153 TASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID-YDKILVMDAGEVK-EYDH  206 (207)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCEEE-ecCC
Confidence            9999999999998888764  5699999999999976 9999999999986 4454

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.5e-46  Score=334.80  Aligned_cols=202  Identities=27%  Similarity=0.416  Sum_probs=173.4

Q ss_pred             eEEEEeeEEEcCCCC-ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEE
Q 026376           28 IISFSDASFGYPGGP-ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA   95 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~-~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~   95 (239)
                      .++++||+|+|++.+ ++|+|+||++++||.++|+|++|||||||+.+|+|.++|++|+|..++.           ..++
T Consensus       336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~  415 (573)
T COG4987         336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETIS  415 (573)
T ss_pred             eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHh
Confidence            799999999998754 6999999999999999999999999999999999999999999998773           2477


Q ss_pred             EEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccC----------CCCCCChHHHHHHHHHHHhccC
Q 026376           96 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ----------PMYTLSGGQKSRVAFAKITFKK  165 (239)
Q Consensus        96 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgGqkqrv~laral~~~  165 (239)
                      +++|....   +..+...++....++.+.+++.++++.+|+++...+.          -...||||||||++|||+|+++
T Consensus       416 vl~Qr~hl---F~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~d  492 (573)
T COG4987         416 VLTQRVHL---FSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHD  492 (573)
T ss_pred             hhccchHH---HHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcC
Confidence            78887532   2345556665555667788999999999997544333          2467999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          166 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       166 p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      .+++||||||.|||+.+..++++.+.+.  ++|+|+|||++..++ .||+|++|++|+++ .+|+++++..
T Consensus       493 apl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le-~~drIivl~~Gkii-e~G~~~~Ll~  561 (573)
T COG4987         493 APLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLE-RMDRIIVLDNGKII-EEGTHAELLA  561 (573)
T ss_pred             CCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHh-hcCEEEEEECCeee-ecCCHHhhhc
Confidence            9999999999999999999999988653  679999999999998 59999999999997 6899988754

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=100.00  E-value=2.7e-45  Score=307.14  Aligned_cols=192  Identities=24%  Similarity=0.452  Sum_probs=155.3

Q ss_pred             CCeEEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------e
Q 026376           26 PPIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------V   92 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~   92 (239)
                      .++++++|++++|++.  ..+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.           .
T Consensus         9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~   88 (226)
T cd03248           9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS   88 (226)
T ss_pred             CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence            4589999999999642  36899999999999999999999999999999999999999999998763           2


Q ss_pred             EEEEEeeccCCCCCCCCcHHHHHHHhCCCCcH---------HHHHHHHHhc--CCCcccccCCCCCCChHHHHHHHHHHH
Q 026376           93 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPE---------QKLRAHLGSF--GVTGNLALQPMYTLSGGQKSRVAFAKI  161 (239)
Q Consensus        93 ~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~lara  161 (239)
                      .++|++|++.. +  ..+...++.........         ..+.++++.+  |+.. ..++++.+|||||||||+||||
T Consensus        89 ~i~~~~q~~~l-~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~-~~~~~~~~LSgG~~qrv~lara  164 (226)
T cd03248          89 KVSLVGQEPVL-F--ARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDT-EVGEKGSQLSGGQKQRVAIARA  164 (226)
T ss_pred             hEEEEecccHH-H--hhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccc-hhhcCCCcCCHHHHHHHHHHHH
Confidence            58999998632 1  12444443211111111         1134567777  6754 3567789999999999999999


Q ss_pred             hccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeE
Q 026376          162 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKA  222 (239)
Q Consensus       162 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i  222 (239)
                      |+.+|++|||||||++||+.++..+.+.+++.  +.|||++|||++++. .||++++|++|++
T Consensus       165 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~i~~l~~g~i  226 (226)
T cd03248         165 LIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVE-RADQILVLDGGRI  226 (226)
T ss_pred             HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCCEEEEecCCcC
Confidence            99999999999999999999999998888754  459999999999996 4999999999874

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=100.00  E-value=1.6e-45  Score=347.02  Aligned_cols=202  Identities=24%  Similarity=0.355  Sum_probs=169.7

Q ss_pred             eEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEE
Q 026376           28 IISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA   95 (239)
Q Consensus        28 ~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~   95 (239)
                      .++++||+|+|+++ +.+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++.           ..++
T Consensus       341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~  420 (582)
T PRK11176        341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVA  420 (582)
T ss_pred             eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhce
Confidence            59999999999753 56999999999999999999999999999999999999999999998874           3589


Q ss_pred             EEeeccCCCCCCCCcHHHHHHHhCC-CCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhcc
Q 026376           96 VFSQHHVDGLDLSSNPLLYMMRCFP-GVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFK  164 (239)
Q Consensus        96 ~~~q~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~~  164 (239)
                      |++|++..   +..+..+++....+ ..+.++++++++.+++.+...          .....+||||||||++|||||++
T Consensus       421 ~v~Q~~~l---f~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~  497 (582)
T PRK11176        421 LVSQNVHL---FNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR  497 (582)
T ss_pred             EEccCcee---ecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence            99999742   33556666643222 246778888888887653221          12235699999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      +|++|||||||++||+++...+.+.+.+.  ++|+|+|||+++.+. .||+|++|++|+++ ..|+++++.+
T Consensus       498 ~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~-~~D~Ii~l~~g~i~-e~g~~~~l~~  567 (582)
T PRK11176        498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-KADEILVVEDGEIV-ERGTHAELLA  567 (582)
T ss_pred             CCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEE-EeCCHHHHHh
Confidence            99999999999999999999999988765  579999999998876 59999999999997 6799888754

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=2e-45  Score=298.53  Aligned_cols=165  Identities=21%  Similarity=0.384  Sum_probs=138.2

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eE
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VR   93 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~   93 (239)
                      +++|+++|++++|     +|+++||++++|++++|+||||||||||+++|+|+++|++|+|.+++.            ..
T Consensus         2 ~~~l~~~~l~~~~-----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   76 (182)
T cd03215           2 EPVLEVRGLSVKG-----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG   76 (182)
T ss_pred             CcEEEEeccEEEe-----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence            3479999999998     799999999999999999999999999999999999999999988762            24


Q ss_pred             EEEEeeccC-CCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376           94 IAVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD  172 (239)
Q Consensus        94 ~~~~~q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD  172 (239)
                      ++|++|++. ..+....+..+++....                           .||||||||++|||||+.+|++||||
T Consensus        77 i~~~~q~~~~~~~~~~~t~~e~l~~~~---------------------------~LS~G~~qrl~la~al~~~p~llllD  129 (182)
T cd03215          77 IAYVPEDRKREGLVLDLSVAENIALSS---------------------------LLSGGNQQKVVLARWLARDPRVLILD  129 (182)
T ss_pred             eEEecCCcccCcccCCCcHHHHHHHHh---------------------------hcCHHHHHHHHHHHHHccCCCEEEEC
Confidence            888888742 11222223333221100                           09999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeE
Q 026376          173 EPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKA  222 (239)
Q Consensus       173 EPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i  222 (239)
                      |||++||+.++..+.+.+.+.   +.|||++|||++++..+||++++|++|++
T Consensus       130 EP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i  182 (182)
T cd03215         130 EPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI  182 (182)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence            999999999999988877654   56999999999999999999999999974

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=100.00  E-value=4.4e-45  Score=314.13  Aligned_cols=198  Identities=21%  Similarity=0.288  Sum_probs=165.5

Q ss_pred             EEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376           29 ISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV   96 (239)
Q Consensus        29 l~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~   96 (239)
                      |+++|++++|++ +..+|+|+||+|++||+++|+|+||||||||+++|+|+++ ++|+|++++.           ..++|
T Consensus         3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~   81 (275)
T cd03289           3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGV   81 (275)
T ss_pred             EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEE
Confidence            789999999953 3568999999999999999999999999999999999998 7899998873           25899


Q ss_pred             EeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCC-----------CChHHHHHHHHHHHhccC
Q 026376           97 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYT-----------LSGGQKSRVAFAKITFKK  165 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----------LSgGqkqrv~laral~~~  165 (239)
                      ++|++...   ..+...++.. +.....+++.++++.+++.+. .++.+..           ||||||||++|||||+.+
T Consensus        82 v~q~~~lf---~~tv~~nl~~-~~~~~~~~~~~~l~~~gL~~~-~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~  156 (275)
T cd03289          82 IPQKVFIF---SGTFRKNLDP-YGKWSDEEIWKVAEEVGLKSV-IEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK  156 (275)
T ss_pred             ECCCcccc---hhhHHHHhhh-ccCCCHHHHHHHHHHcCCHHH-HHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence            99987421   2345555422 122345678889999999643 4555555           999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          166 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       166 p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |+||||||||++||+.+...+.+.+.+.  +.|||+|||+++++.. ||+|++|++|+++ +.|+++++..
T Consensus       157 p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~-~dri~vl~~G~i~-~~g~~~~l~~  225 (275)
T cd03289         157 AKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE-CQRFLVIEENKVR-QYDSIQKLLN  225 (275)
T ss_pred             CCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh-CCEEEEecCCeEe-ecCCHHHHhh
Confidence            9999999999999999999988888753  5699999999999875 9999999999997 5788887654

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=100.00  E-value=1.5e-45  Score=354.23  Aligned_cols=202  Identities=23%  Similarity=0.387  Sum_probs=171.7

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV   96 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~   96 (239)
                      .++++||+|+|++++.+|+|+||+|++|+.++|+||||||||||+++|+|+++|++|+|.+++.           ..++|
T Consensus       473 ~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~  552 (708)
T TIGR01193       473 DIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINY  552 (708)
T ss_pred             cEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEE
Confidence            5999999999975567999999999999999999999999999999999999999999999874           36999


Q ss_pred             EeeccCCCCCCCCcHHHHHHHh-CCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhccC
Q 026376           97 FSQHHVDGLDLSSNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKK  165 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~~~  165 (239)
                      ++|++..   +..+..+++... .+..+.+++.++++..++.+...          ......||||||||++|||||+++
T Consensus       553 v~Q~~~l---f~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~  629 (708)
T TIGR01193       553 LPQEPYI---FSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTD  629 (708)
T ss_pred             EecCcee---hhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhC
Confidence            9999752   345666666533 23456778888888877743221          223467999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc-CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          166 PHIILLDEPSNHLDLDAVEALIQGLVLF-QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       166 p~llllDEPt~~LD~~~~~~l~~~l~~~-~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |++|||||||++||.++.+.+.+.+.+. +.|+|+|||+++.+. .||+|++|++|+++ ..|+++++.+
T Consensus       630 p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~-~~D~i~~l~~G~i~-~~G~~~~L~~  697 (708)
T TIGR01193       630 SKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAK-QSDKIIVLDHGKII-EQGSHDELLD  697 (708)
T ss_pred             CCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHH-cCCEEEEEECCEEE-EECCHHHHHh
Confidence            9999999999999999999999888765 579999999999885 69999999999997 6899988754

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=100.00  E-value=3.9e-45  Score=306.15  Aligned_cols=190  Identities=26%  Similarity=0.342  Sum_probs=152.6

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCC
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLS  108 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~  108 (239)
                      +.+++++++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|++++... .+..+..  .+...
T Consensus        23 l~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~-~~~~~~~--~~~~~   98 (224)
T cd03220          23 LGILGRKGEVG-EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVS-SLLGLGG--GFNPE   98 (224)
T ss_pred             hhhhhhhhhcC-CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc-hhhcccc--cCCCC
Confidence            78899999995 56799999999999999999999999999999999999999999999887531 1111111  11122


Q ss_pred             CcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH
Q 026376          109 SNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA  182 (239)
Q Consensus       109 ~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~  182 (239)
                      .+..+++..  ......    .+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||++||+.+
T Consensus        99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~  177 (224)
T cd03220          99 LTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGD-FIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAF  177 (224)
T ss_pred             CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence            233333321  111111    235677888899964 5678899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376          183 VEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       183 ~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~  223 (239)
                      +..+.+.+.+.   +.|||++|||.+++..+||++++|++|+++
T Consensus       178 ~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~  221 (224)
T cd03220         178 QEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIR  221 (224)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            98888877643   569999999999999999999999999986

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1e-44  Score=319.16  Aligned_cols=205  Identities=20%  Similarity=0.266  Sum_probs=166.2

Q ss_pred             CCCeEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCceeEEecCc-------
Q 026376           25 GPPIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK-------   91 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~-------   91 (239)
                      ...+|+++|++++|.+ ...+|+|+||+|++||++||+||||||||||+++|+|+.+     |++|+|.+++.       
T Consensus        77 ~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~  156 (329)
T PRK14257         77 HANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI  156 (329)
T ss_pred             cCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence            3458999999999953 3469999999999999999999999999999999999986     57999987543       


Q ss_pred             ------eEEEEEeeccCCCCCCCCcHHHHHH--HhCCCCc-H----HHHHHHHHhcCCCc---ccccCCCCCCChHHHHH
Q 026376           92 ------VRIAVFSQHHVDGLDLSSNPLLYMM--RCFPGVP-E----QKLRAHLGSFGVTG---NLALQPMYTLSGGQKSR  155 (239)
Q Consensus        92 ------~~~~~~~q~~~~~~~~~~~~~~~~~--~~~~~~~-~----~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqr  155 (239)
                            ..++|++|++...   ..+...++.  ....... .    +.+.++++.+++..   ...++++.+||||||||
T Consensus       157 ~~~~lr~~i~~v~q~~~~~---~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqR  233 (329)
T PRK14257        157 SSLELRTRIGMVFQKPTPF---EMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQR  233 (329)
T ss_pred             chHhhhccEEEEecCCccC---CCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHH
Confidence                  2599999987532   234444443  1111111 1    22566788887632   23467889999999999


Q ss_pred             HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          156 VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       156 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      ++|||||+.+|+||||||||++||+.+...+.+.+.+.  +.|||+|||+++++.++||+|++|++|+++ ..|+++++.
T Consensus       234 l~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~-e~g~~~~l~  312 (329)
T PRK14257        234 LCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIE-EAGETKTIF  312 (329)
T ss_pred             HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence            99999999999999999999999999988887777654  469999999999999999999999999997 579888864

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.5e-46  Score=342.55  Aligned_cols=197  Identities=25%  Similarity=0.285  Sum_probs=162.7

Q ss_pred             EEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEEEEEe
Q 026376           31 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRIAVFS   98 (239)
Q Consensus        31 ~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~~~~~   98 (239)
                      ++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.            ..++|++
T Consensus         1 ~~nl~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~   79 (491)
T PRK10982          1 MSNISKSFP-GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH   79 (491)
T ss_pred             CCceEEEeC-CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence            368999995 457999999999999999999999999999999999999999999998763            2489999


Q ss_pred             eccCCCCCCCCcHHHHHHHh---CCC--Cc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 026376           99 QHHVDGLDLSSNPLLYMMRC---FPG--VP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII  169 (239)
Q Consensus        99 q~~~~~~~~~~~~~~~~~~~---~~~--~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ll  169 (239)
                      |++..  ....+...++...   ...  ..    .+++.++++.+++.. ..++++.+|||||||||+|||||+.+|++|
T Consensus        80 q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~lA~al~~~p~ll  156 (491)
T PRK10982         80 QELNL--VLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI-DPRAKVATLSVSQMQMIEIAKAFSYNAKIV  156 (491)
T ss_pred             ccccc--ccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCC-CccCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence            98632  2223444443211   001  11    235778899999974 467889999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376          170 LLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       170 llDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                      ||||||++||+.++.++.+.+++   .+.|||+||||++++..+||++++|++|+++ ..|+++++
T Consensus       157 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~  221 (491)
T PRK10982        157 IMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWI-ATQPLAGL  221 (491)
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-eecChhhC
Confidence            99999999999999998777755   3679999999999999999999999999997 56776554

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=3.3e-45  Score=292.37  Aligned_cols=158  Identities=22%  Similarity=0.399  Sum_probs=130.6

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCC
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLS  108 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~  108 (239)
                      |+++|++++|++ ..+++++||++++||+++|+||||||||||+++|+|+++|++|+|.+++..         ....   
T Consensus         1 l~~~~l~~~~~~-~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~---------~~~~---   67 (163)
T cd03216           1 LELRGITKRFGG-VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKE---------VSFA---   67 (163)
T ss_pred             CEEEEEEEEECC-eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE---------CCcC---
Confidence            478999999954 579999999999999999999999999999999999999999999876531         0000   


Q ss_pred             CcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH
Q 026376          109 SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ  188 (239)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~  188 (239)
                       .....               .-..++.        +.+||||||||++|||||+.+|++|||||||++||+.++..+.+
T Consensus        68 -~~~~~---------------~~~~i~~--------~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~  123 (163)
T cd03216          68 -SPRDA---------------RRAGIAM--------VYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFK  123 (163)
T ss_pred             -CHHHH---------------HhcCeEE--------EEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHH
Confidence             00000               0001111        11299999999999999999999999999999999999999888


Q ss_pred             HHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376          189 GLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       189 ~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~  223 (239)
                      .++++   +.|||++|||++++..+||++++|++|+++
T Consensus       124 ~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~  161 (163)
T cd03216         124 VIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV  161 (163)
T ss_pred             HHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            87654   569999999999999999999999999985

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=100.00  E-value=5.8e-45  Score=300.71  Aligned_cols=186  Identities=26%  Similarity=0.395  Sum_probs=148.8

Q ss_pred             EEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCC
Q 026376           29 ISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG  104 (239)
Q Consensus        29 l~~~~l~~~y~~~----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~  104 (239)
                      ++++||+++|++.    ..+|+++||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++  .++|++|++.. 
T Consensus         1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g--~i~~~~q~~~l-   77 (204)
T cd03250           1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG--SIAYVSQEPWI-   77 (204)
T ss_pred             CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC--EEEEEecCchh-
Confidence            4789999999653    3699999999999999999999999999999999999999999999988  79999999742 


Q ss_pred             CCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCc----------ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 026376          105 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG----------NLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP  174 (239)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEP  174 (239)
                      +  ..+..+++.... ....++..++++.+++..          ...++++.+||+|||||++|||||+.+|+++|||||
T Consensus        78 ~--~~t~~enl~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP  154 (204)
T cd03250          78 Q--NGTIRENILFGK-PFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDP  154 (204)
T ss_pred             c--cCcHHHHhccCC-CcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence            1  235555543211 122333444444444321          123456789999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHH-Hhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCe
Q 026376          175 SNHLDLDAVEALIQG-LVL---FQGGILMVSHDEHLISGSVEELWVVSEGK  221 (239)
Q Consensus       175 t~~LD~~~~~~l~~~-l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~  221 (239)
                      |++||+.+...+.+. +.+   .+.|||++||+++.+.. ||++++|++|+
T Consensus       155 ~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i~~l~~G~  204 (204)
T cd03250         155 LSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDNGR  204 (204)
T ss_pred             cccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEEEEEeCCC
Confidence            999999998888763 432   24699999999999987 99999999885

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=9.9e-46  Score=313.57  Aligned_cols=202  Identities=21%  Similarity=0.293  Sum_probs=166.8

Q ss_pred             eEEEEeeEEEcCCC-----------------------CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCce
Q 026376           28 IISFSDASFGYPGG-----------------------PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG   84 (239)
Q Consensus        28 ~l~~~~l~~~y~~~-----------------------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G   84 (239)
                      .++++|+++-|+.+                       ..-++|+||+|+.||+++|.|-||||||||+|+|+++++|++|
T Consensus         4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G   83 (386)
T COG4175           4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG   83 (386)
T ss_pred             eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence            47888888888421                       1237899999999999999999999999999999999999999


Q ss_pred             eEEecCc---------------eEEEEEeeccCCCCCCCCcHHHHHHHh--CCC----CcHHHHHHHHHhcCCCcccccC
Q 026376           85 TVFRSAK---------------VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPG----VPEQKLRAHLGSFGVTGNLALQ  143 (239)
Q Consensus        85 ~i~~~~~---------------~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~l~~~~l~~~~~~~  143 (239)
                      +|.+++.               .+++++||++.  +.+..+++++....  ..+    ..++++.++|+.+|+.+ +.++
T Consensus        84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa--LlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~-~~~~  160 (386)
T COG4175          84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFA--LLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEG-YADK  160 (386)
T ss_pred             eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc--cccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchh-hhhc
Confidence            9998874               36999999864  33445555554321  112    23467889999999985 5788


Q ss_pred             CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHH----hhcCCEEEEEecCHHHHhhhcCeEEEEeC
Q 026376          144 PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL----VLFQGGILMVSHDEHLISGSVEELWVVSE  219 (239)
Q Consensus       144 ~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l----~~~~~tii~vsHd~~~~~~~~d~i~~l~~  219 (239)
                      ++.+|||||||||.|||||+.+|+|||+|||||+|||--+.++.+.|    ++.++||||||||++++.++.|||.+|++
T Consensus       161 yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkd  240 (386)
T COG4175         161 YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKD  240 (386)
T ss_pred             CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecC
Confidence            99999999999999999999999999999999999997666655544    45678999999999999999999999999


Q ss_pred             CeEEeeCCChhHHH
Q 026376          220 GKATPFHGTFHDYK  233 (239)
Q Consensus       220 G~i~~~~g~~~~~~  233 (239)
                      |+++. .|+++|+.
T Consensus       241 G~ivQ-~Gtp~eIl  253 (386)
T COG4175         241 GEIVQ-VGTPEEIL  253 (386)
T ss_pred             CeEEE-eCCHHHHH
Confidence            99984 68887753

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=100.00  E-value=3.9e-45  Score=306.29  Aligned_cols=193  Identities=18%  Similarity=0.327  Sum_probs=157.3

Q ss_pred             eEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC---CCceeEEecCc--------eE
Q 026376           28 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ---PSSGTVFRSAK--------VR   93 (239)
Q Consensus        28 ~l~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~~--------~~   93 (239)
                      .+.++|++++|++.   +.+|+|+||+|++||+++|+||||||||||+++|+|+++   |++|+|.+++.        ..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~   82 (226)
T cd03234           3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC   82 (226)
T ss_pred             cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence            46789999999764   579999999999999999999999999999999999999   99999998763        35


Q ss_pred             EEEEeeccCCCCCCCCcHHHHHHH----hCCC-Cc----HHHHHH-HHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 026376           94 IAVFSQHHVDGLDLSSNPLLYMMR----CFPG-VP----EQKLRA-HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF  163 (239)
Q Consensus        94 ~~~~~q~~~~~~~~~~~~~~~~~~----~~~~-~~----~~~~~~-~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~  163 (239)
                      ++|++|++...  ...+..+++..    .... ..    ...+.+ .++.+++.. ..++.+.+|||||+||++|||||+
T Consensus        83 i~~~~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~laral~  159 (226)
T cd03234          83 VAYVRQDDILL--PGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTR-IGGNLVKGISGGERRRVSIAVQLL  159 (226)
T ss_pred             EEEeCCCCccC--cCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchh-hhcccccCcCHHHHHHHHHHHHHH
Confidence            89999986322  22233333321    1111 11    123444 788888864 456788999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCH-HHHhhhcCeEEEEeCCeEE
Q 026376          164 KKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDE-HLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~-~~~~~~~d~i~~l~~G~i~  223 (239)
                      .+|++|||||||++||+.++..+.+.+.+.   +.|||++||+. +.+..+||++++|++|+++
T Consensus       160 ~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~  223 (226)
T cd03234         160 WDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIV  223 (226)
T ss_pred             hCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEE
Confidence            999999999999999999999888877643   56999999998 5888899999999999986

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=100.00  E-value=5.5e-45  Score=293.70  Aligned_cols=160  Identities=26%  Similarity=0.398  Sum_probs=137.0

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEEEEe
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVFS   98 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~~~~   98 (239)
                      ++++|++++|++ ..+|+++||++.+||+++|+||||||||||+++|+|+++|++|+|.+++.          ..++|++
T Consensus         1 l~~~~l~~~~~~-~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~   79 (173)
T cd03230           1 IEVRNLSKRYGK-KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLP   79 (173)
T ss_pred             CEEEEEEEEECC-eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEe
Confidence            468999999954 46999999999999999999999999999999999999999999988763          2478888


Q ss_pred             eccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 026376           99 QHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL  178 (239)
Q Consensus        99 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~L  178 (239)
                      |++..  ....+..+++.                               |||||+||++|||||+.+|++|||||||++|
T Consensus        80 q~~~~--~~~~tv~~~~~-------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~L  126 (173)
T cd03230          80 EEPSL--YENLTVRENLK-------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGL  126 (173)
T ss_pred             cCCcc--ccCCcHHHHhh-------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCC
Confidence            87531  11122222210                               9999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeE
Q 026376          179 DLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKA  222 (239)
Q Consensus       179 D~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i  222 (239)
                      |+.++..+.+.+.+.   +.|+|++|||.+++..+||++++|++|++
T Consensus       127 D~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i  173 (173)
T cd03230         127 DPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI  173 (173)
T ss_pred             CHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence            999999988877654   46999999999999999999999999874

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=100.00  E-value=1.6e-45  Score=309.61  Aligned_cols=181  Identities=30%  Similarity=0.361  Sum_probs=148.6

Q ss_pred             eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce------EEEEEeeccCCCCCCCCcHHHHHHHh
Q 026376           45 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------RIAVFSQHHVDGLDLSSNPLLYMMRC  118 (239)
Q Consensus        45 l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------~~~~~~q~~~~~~~~~~~~~~~~~~~  118 (239)
                      |+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++..      ..+|++|++...  ...+..+++...
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~--~~~tv~e~l~~~   78 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLL--PWLTVRENIALA   78 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccC--CCCCHHHHHHHH
Confidence            579999999999999999999999999999999999999999987642      258999986422  223444433211


Q ss_pred             ----CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 026376          119 ----FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL  190 (239)
Q Consensus       119 ----~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l  190 (239)
                          .....    .+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l  157 (230)
T TIGR01184        79 VDRVLPDLSKSERRAIVEEHIALVGLTE-AADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEEL  157 (230)
T ss_pred             HHhcccCCCHHHHHHHHHHHHHHcCCHH-HHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence                11111    234678899999974 567889999999999999999999999999999999999999999988877


Q ss_pred             hhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCCh
Q 026376          191 VLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTF  229 (239)
Q Consensus       191 ~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~  229 (239)
                      .+.    +.|||++|||++++..+||++++|++|+++ ..|+.
T Consensus       158 ~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~-~~~~~  199 (230)
T TIGR01184       158 MQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAA-NIGQI  199 (230)
T ss_pred             HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEe-cccCc
Confidence            642    569999999999999999999999999986 44554

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-44  Score=309.26  Aligned_cols=204  Identities=20%  Similarity=0.214  Sum_probs=166.9

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-----CceeEEecCc---------
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK---------   91 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~---------   91 (239)
                      ++.+.++++++.|+ +..+|+|+||+|++||+++|+|+||||||||+++|+|+++|     ++|+|.+++.         
T Consensus         6 ~~~~~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~   84 (261)
T PRK14263          6 PIVMDCKLDKIFYG-NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP   84 (261)
T ss_pred             CceEEEEeEEEEeC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence            45789999999994 56799999999999999999999999999999999999986     7999988753         


Q ss_pred             ----eEEEEEeeccCCCCCCCCcHHHHHHHh--C---CCCcHHHHHHHHHhcCCCcc---cccCCCCCCChHHHHHHHHH
Q 026376           92 ----VRIAVFSQHHVDGLDLSSNPLLYMMRC--F---PGVPEQKLRAHLGSFGVTGN---LALQPMYTLSGGQKSRVAFA  159 (239)
Q Consensus        92 ----~~~~~~~q~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~la  159 (239)
                          ..++|++|++...   ..+..+++...  .   .....+++.++++.+++...   ..++++.+|||||+||++||
T Consensus        85 ~~~~~~i~~v~q~~~~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~la  161 (261)
T PRK14263         85 VVVRRYIGMVFQQPNPF---SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIA  161 (261)
T ss_pred             HhhhhceEEEecCCccc---cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHH
Confidence                2489999986421   23444444211  1   11123467888999988532   23467889999999999999


Q ss_pred             HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEe--------CCeEEeeCCCh
Q 026376          160 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVS--------EGKATPFHGTF  229 (239)
Q Consensus       160 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~--------~G~i~~~~g~~  229 (239)
                      |||+.+|++|||||||+|||+.++..+.+.+++.  +.|||++||+++++..+||++++|+        +|+++ ..|+.
T Consensus       162 ral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~-~~g~~  240 (261)
T PRK14263        162 RAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLV-EMGPT  240 (261)
T ss_pred             HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEE-EeCCH
Confidence            9999999999999999999999999998888764  4599999999999999999999996        89997 57888


Q ss_pred             hHHHH
Q 026376          230 HDYKK  234 (239)
Q Consensus       230 ~~~~~  234 (239)
                      +++.+
T Consensus       241 ~~~~~  245 (261)
T PRK14263        241 AQIFQ  245 (261)
T ss_pred             HHHHh
Confidence            77643

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=5.6e-45  Score=343.95  Aligned_cols=200  Identities=24%  Similarity=0.370  Sum_probs=170.4

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV   96 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~   96 (239)
                      .++++|++|+|+++..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++.           ..++|
T Consensus       340 ~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~  419 (592)
T PRK10790        340 RIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAM  419 (592)
T ss_pred             eEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEE
Confidence            5999999999975556999999999999999999999999999999999999999999998873           35999


Q ss_pred             EeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhccCC
Q 026376           97 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKKP  166 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~~~p  166 (239)
                      ++|++..   +..+..+++.... ..+++++.++++.+|+.+...          ......||||||||++|||||+.+|
T Consensus       420 v~Q~~~l---F~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~  495 (592)
T PRK10790        420 VQQDPVV---LADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTP  495 (592)
T ss_pred             EccCCcc---ccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCC
Confidence            9999752   3345666664432 456778888988888753221          1234679999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          167 HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       167 ~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      ++|||||||++||+++.+.+.+.+.+.  ++|+|+|||+++.+. .||+|++|++|+++ ..|+++++.
T Consensus       496 ~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~-~~D~ii~l~~G~i~-~~G~~~~L~  562 (592)
T PRK10790        496 QILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIV-EADTILVLHRGQAV-EQGTHQQLL  562 (592)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEE-EEcCHHHHH
Confidence            999999999999999999999888765  579999999998887 59999999999997 679988765

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9e-45  Score=308.40  Aligned_cols=201  Identities=19%  Similarity=0.242  Sum_probs=164.1

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC-----CCceeEEecCc-----------
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-----PSSGTVFRSAK-----------   91 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~-----------   91 (239)
                      +++++||++.|+ ++.+|+|+||+|.+||+++|+||||||||||+++|+|+..     |++|+|.+++.           
T Consensus         3 ~l~~~~v~~~~~-~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~   81 (250)
T PRK14266          3 RIEVENLNTYFD-DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE   81 (250)
T ss_pred             EEEEEeEEEEeC-CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence            589999999995 4569999999999999999999999999999999999864     48999987662           


Q ss_pred             --eEEEEEeeccCCCCCCCCcHHHHHHHh---CCCC----cHHHHHHHHHhcCCCc---ccccCCCCCCChHHHHHHHHH
Q 026376           92 --VRIAVFSQHHVDGLDLSSNPLLYMMRC---FPGV----PEQKLRAHLGSFGVTG---NLALQPMYTLSGGQKSRVAFA  159 (239)
Q Consensus        92 --~~~~~~~q~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~la  159 (239)
                        ..++|++|++... .  .+..+++...   ....    ..+++.++++.+++..   ...++++.+||||||||++||
T Consensus        82 ~~~~i~~~~q~~~~~-~--~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~la  158 (250)
T PRK14266         82 LRKKVGMVFQKPNPF-P--KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIA  158 (250)
T ss_pred             HhhheEEEecCCccC-c--chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHH
Confidence              2489999986422 1  2444443211   1111    1245667888888742   234678899999999999999


Q ss_pred             HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          160 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       160 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      |||+.+|++|||||||++||+.++..+.+.|.+.  +.|||++||+++++..+||++++|++|++. +.|+++++.
T Consensus       159 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~-~~g~~~~~~  233 (250)
T PRK14266        159 RTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEII-ESGLTDQIF  233 (250)
T ss_pred             HHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEE-EeCCHHHHH
Confidence            9999999999999999999999999988877654  469999999999999999999999999997 678888764

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.6e-47  Score=302.46  Aligned_cols=202  Identities=23%  Similarity=0.384  Sum_probs=167.7

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce-----------EEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------RIAV   96 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------~~~~   96 (239)
                      |++++||+++| +.+.+++++|++|++|.+++|+|||||||||||.+++.++++++|+|++++..           .++.
T Consensus         1 MI~i~nv~K~y-~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI   79 (252)
T COG4604           1 MITIENVSKSY-GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI   79 (252)
T ss_pred             CeeehhhhHhh-CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence            58999999999 56789999999999999999999999999999999999999999999988753           3455


Q ss_pred             EeeccCCCCCCCCcHHHHHHHhCC-------CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 026376           97 FSQHHVDGLDLSSNPLLYMMRCFP-------GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII  169 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ll  169 (239)
                      +.|+......++...+..+. .++       ..+...+.++++.+++. ++.++...+||||||||+.||..++++.+.+
T Consensus        80 LkQ~N~i~~rlTV~dLv~FG-RfPYSqGRlt~eD~~~I~~aieyl~L~-~l~dryLd~LSGGQrQRAfIAMVlaQdTdyv  157 (252)
T COG4604          80 LKQENHINSRLTVRDLVGFG-RFPYSQGRLTKEDRRIINEAIEYLHLE-DLSDRYLDELSGGQRQRAFIAMVLAQDTDYV  157 (252)
T ss_pred             HHhhchhhheeEHHHHhhcC-CCcccCCCCchHHHHHHHHHHHHhccc-chHHHhHHhcccchhhhhhhheeeeccCcEE
Confidence            55554322222222222221 111       23456788999999997 4788999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          170 LLDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       170 llDEPt~~LD~~~~~~l~~~l~----~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      +||||.|+||......+++.|+    +.++||++|-||.+|+..++|+|+.|++|+++ ..|+++++.
T Consensus       158 lLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv-~~G~~~eii  224 (252)
T COG4604         158 LLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVV-KQGSPDEII  224 (252)
T ss_pred             EecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEE-ecCCHHHhc
Confidence            9999999999998877777665    45889999999999999999999999999997 789999875

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=3.9e-45  Score=286.11  Aligned_cols=192  Identities=24%  Similarity=0.312  Sum_probs=159.6

Q ss_pred             eEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------
Q 026376           28 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------   91 (239)
Q Consensus        28 ~l~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------   91 (239)
                      +|+++++++..+.+   ..+|++|+|.|++||.++|+||+||||||||-+++|+..|++|+|...+.             
T Consensus         6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~   85 (228)
T COG4181           6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL   85 (228)
T ss_pred             eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence            78999999988543   36999999999999999999999999999999999999999999987653             


Q ss_pred             --eEEEEEeeccCCCCCCCCcHHHHHHH----hC--CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 026376           92 --VRIAVFSQHHVDGLDLSSNPLLYMMR----CF--PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF  163 (239)
Q Consensus        92 --~~~~~~~q~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~  163 (239)
                        .++|++||.+..  ..+.+.+++...    ..  .......+.++|+.+|+.+. ...++.+|||||+|||+|||||+
T Consensus        86 R~~~vGfVFQSF~L--ip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~R-l~HyP~qLSGGEQQRVAiARAfa  162 (228)
T COG4181          86 RARHVGFVFQSFHL--IPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKR-LTHYPAQLSGGEQQRVALARAFA  162 (228)
T ss_pred             hccceeEEEEeeec--cccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccc-cccCccccCchHHHHHHHHHHhc
Confidence              369999998642  233344444321    11  12334568899999999864 46778999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376          164 KKPHIILLDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       164 ~~p~llllDEPt~~LD~~~~~~l~~~l~----~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~  223 (239)
                      ..|+||+.||||-+||..+-..+.+.+-    +.+.|.|+||||+..+.+ |+|.+.|.+|+++
T Consensus       163 ~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~  225 (228)
T COG4181         163 GRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLV  225 (228)
T ss_pred             CCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeecceec
Confidence            9999999999999999998887777653    346699999999999886 9999999999986

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=100.00  E-value=1.1e-44  Score=293.26  Aligned_cols=162  Identities=28%  Similarity=0.488  Sum_probs=139.0

Q ss_pred             EEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEEEE
Q 026376           29 ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVF   97 (239)
Q Consensus        29 l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~~~   97 (239)
                      |+++|++++|++. ..+++++||+|++||+++|+||||||||||+++|+|+.+|++|+|.+++.          ..++|+
T Consensus         1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~   80 (178)
T cd03247           1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL   80 (178)
T ss_pred             CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence            4789999999643 36899999999999999999999999999999999999999999998764          247888


Q ss_pred             eeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 026376           98 SQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH  177 (239)
Q Consensus        98 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~  177 (239)
                      +|++.. +  ..+..+++                             +.+||||||||++||||++.+|++|||||||++
T Consensus        81 ~q~~~~-~--~~tv~~~i-----------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~  128 (178)
T cd03247          81 NQRPYL-F--DTTLRNNL-----------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVG  128 (178)
T ss_pred             ccCCee-e--cccHHHhh-----------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence            886521 1  11221111                             679999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376          178 LDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       178 LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~  223 (239)
                      ||+.++..+.+.+.+.  +.|||++|||.+++. .||++++|++|+++
T Consensus       129 LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~~~~l~~g~i~  175 (178)
T cd03247         129 LDPITERQLLSLIFEVLKDKTLIWITHHLTGIE-HMDKILFLENGKII  175 (178)
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEE
Confidence            9999999988888654  569999999999996 69999999999986

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=2.3e-44  Score=328.74  Aligned_cols=203  Identities=22%  Similarity=0.292  Sum_probs=162.2

Q ss_pred             CCeEEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCC
Q 026376           26 PPIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVD  103 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~  103 (239)
                      .++++++|+++.|+++  +.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++...  ++.+... 
T Consensus        19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~--~i~~~~~-   95 (549)
T PRK13545         19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA--LIAISSG-   95 (549)
T ss_pred             cceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee--eEEeccc-
Confidence            4589999999999653  3589999999999999999999999999999999999999999999887542  2222211 


Q ss_pred             CCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 026376          104 GLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH  177 (239)
Q Consensus       104 ~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~  177 (239)
                       +....+...++..  ......    .+.+.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||+|
T Consensus        96 -l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~-~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsg  173 (549)
T PRK13545         96 -LNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGK-FIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSV  173 (549)
T ss_pred             -cCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChh-HhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence             1111233333321  111121    234567889999964 45788999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          178 LDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       178 LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      ||+.++..+.+.|.+.   +.|||++|||++++..+||++++|++|++. ..|+++++..
T Consensus       174 LD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv-~~G~~~el~~  232 (549)
T PRK13545        174 GDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVK-EYGDIKEVVD  232 (549)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EECCHHHHHh
Confidence            9999998888877543   679999999999999999999999999997 5687766543

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=100.00  E-value=6.3e-45  Score=299.25  Aligned_cols=182  Identities=26%  Similarity=0.404  Sum_probs=148.0

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEEEEe
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVFS   98 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~~~~   98 (239)
                      |+++|+++.|+ ++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.          ..++|++
T Consensus         1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~   79 (198)
T TIGR01189         1 LAARNLACSRG-ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLG   79 (198)
T ss_pred             CEEEEEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEec
Confidence            47899999995 457999999999999999999999999999999999999999999988764          2588999


Q ss_pred             eccCCCCCCCCcHHHHHHH--hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 026376           99 QHHVDGLDLSSNPLLYMMR--CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN  176 (239)
Q Consensus        99 q~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~  176 (239)
                      |+...  ....+...++..  ........++.++++.+++.+ ..++++.+||||||||++||||++.+|+++||||||+
T Consensus        80 q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~  156 (198)
T TIGR01189        80 HLPGL--KPELSALENLHFWAAIHGGAQRTIEDALAAVGLTG-FEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTT  156 (198)
T ss_pred             cCccc--ccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHH-HhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence            87532  222344443321  111222446788999999974 4578899999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEE
Q 026376          177 HLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWV  216 (239)
Q Consensus       177 ~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~  216 (239)
                      +||+.++..+.+.+.++   +.|||++||+...+  .|++++.
T Consensus       157 ~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~--~~~~~~~  197 (198)
T TIGR01189       157 ALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL--VEARELR  197 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc--cceEEee
Confidence            99999999988887654   57999999998655  3677654

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=100.00  E-value=9.5e-45  Score=292.31  Aligned_cols=158  Identities=32%  Similarity=0.623  Sum_probs=134.2

Q ss_pred             EEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376           29 ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV   96 (239)
Q Consensus        29 l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~   96 (239)
                      ++++|++++|++. ..+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.           ..++|
T Consensus         1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (173)
T cd03246           1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY   80 (173)
T ss_pred             CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence            4789999999642 45899999999999999999999999999999999999999999998763           24778


Q ss_pred             EeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 026376           97 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN  176 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~  176 (239)
                      ++|++.. +  ..+..+++                                ||||||||++|||||+.+|++|||||||+
T Consensus        81 ~~q~~~~-~--~~tv~~~l--------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~  125 (173)
T cd03246          81 LPQDDEL-F--SGSIAENI--------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNS  125 (173)
T ss_pred             ECCCCcc-c--cCcHHHHC--------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence            8876521 1  11222111                                99999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeE
Q 026376          177 HLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKA  222 (239)
Q Consensus       177 ~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i  222 (239)
                      +||+.++..+.+.+.+.   +.|||++|||.+++. +||++++|++|++
T Consensus       126 ~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~v~~l~~G~i  173 (173)
T cd03246         126 HLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-SADRILVLEDGRV  173 (173)
T ss_pred             ccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEEECCCC
Confidence            99999999888877653   569999999999985 7999999999874

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=100.00  E-value=1.4e-44  Score=306.73  Aligned_cols=193  Identities=22%  Similarity=0.277  Sum_probs=150.6

Q ss_pred             EEcCCCCceeeeeeEEEe-----CCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCc
Q 026376           36 FGYPGGPILFKNLNFGID-----LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSN  110 (239)
Q Consensus        36 ~~y~~~~~~l~~isl~i~-----~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~  110 (239)
                      |+|++....+++++|++.     +||+++|+||||||||||+++|+|+++|++|+|.+++. .++|++|++....  ..+
T Consensus         1 ~~y~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-~i~~~~q~~~~~~--~~t   77 (246)
T cd03237           1 YTYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-TVSYKPQYIKADY--EGT   77 (246)
T ss_pred             CCCcccccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-eEEEecccccCCC--CCC
Confidence            346544446677777776     79999999999999999999999999999999998875 7999999864322  234


Q ss_pred             HHHHHHHhCC--CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH
Q 026376          111 PLLYMMRCFP--GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ  188 (239)
Q Consensus       111 ~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~  188 (239)
                      ..+++.....  ........++++.+++.. ..++++.+|||||||||+|||||+.+|+++||||||++||+.++..+.+
T Consensus        78 v~e~l~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~  156 (246)
T cd03237          78 VRDLLSSITKDFYTHPYFKTEIAKPLQIEQ-ILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASK  156 (246)
T ss_pred             HHHHHHHHhhhccccHHHHHHHHHHcCCHH-HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence            4443321111  112334677899999964 5678899999999999999999999999999999999999999998887


Q ss_pred             HHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEE-eeCCChhHH
Q 026376          189 GLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT-PFHGTFHDY  232 (239)
Q Consensus       189 ~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~-~~~g~~~~~  232 (239)
                      .+++.    +.|||+||||++++..+||++++|+++... ...+++.+.
T Consensus       157 ~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~  205 (246)
T cd03237         157 VIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSL  205 (246)
T ss_pred             HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHH
Confidence            77653    579999999999999999999999765432 123455443

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.7e-45  Score=339.05  Aligned_cols=202  Identities=18%  Similarity=0.253  Sum_probs=163.4

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eE
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VR   93 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~   93 (239)
                      ++.++++|+++.     .+++|+||+|.+||+++|+||||||||||+|+|+|+++|++|+|+++++            ..
T Consensus       255 ~~~l~~~~~~~~-----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~  329 (501)
T PRK11288        255 EVRLRLDGLKGP-----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG  329 (501)
T ss_pred             CcEEEEeccccC-----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence            457899999832     3899999999999999999999999999999999999999999998753            24


Q ss_pred             EEEEeeccC-CCCCCCCcHHHHHHHh---C--------CC-CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 026376           94 IAVFSQHHV-DGLDLSSNPLLYMMRC---F--------PG-VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK  160 (239)
Q Consensus        94 ~~~~~q~~~-~~~~~~~~~~~~~~~~---~--------~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lar  160 (239)
                      ++|++|++. ..+....+...++...   .        .. ...+.+.++++.+++.....++++.+|||||||||+|||
T Consensus       330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~  409 (501)
T PRK11288        330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGR  409 (501)
T ss_pred             CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHH
Confidence            899999852 1122223444433210   0        00 112457789999999534568899999999999999999


Q ss_pred             HhccCCCEEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          161 ITFKKPHIILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       161 al~~~p~llllDEPt~~LD~~~~~~l~~~l~---~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      ||+.+|++|||||||+|||+.++..+++.+.   +.+.|||+||||++++..+||++++|++|+++ +.|+++++.
T Consensus       410 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~-~~~~~~~~~  484 (501)
T PRK11288        410 WLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIA-GELAREQAT  484 (501)
T ss_pred             HHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEE-EEEccccCC
Confidence            9999999999999999999999998877764   44679999999999999999999999999987 567766654

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=5.2e-44  Score=306.08  Aligned_cols=187  Identities=19%  Similarity=0.235  Sum_probs=151.1

Q ss_pred             ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHH--hCC
Q 026376           43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR--CFP  120 (239)
Q Consensus        43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~  120 (239)
                      .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.  +++++|....  ....+...++..  ...
T Consensus        38 ~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~--~~~~~~~~~~--~~~~tv~enl~~~~~~~  113 (264)
T PRK13546         38 FALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE--VSVIAISAGL--SGQLTGIENIEFKMLCM  113 (264)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE--EeEEecccCC--CCCCcHHHHHHHHHHHc
Confidence            5899999999999999999999999999999999999999999998875  4566665421  112233333321  111


Q ss_pred             CCcH----HHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---c
Q 026376          121 GVPE----QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---F  193 (239)
Q Consensus       121 ~~~~----~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~---~  193 (239)
                      ....    ..+..+++.+++.+ ..++++.+|||||+||++|||||+.+|++|||||||++||+.++..+.+.+.+   .
T Consensus       114 ~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~  192 (264)
T PRK13546        114 GFKRKEIKAMTPKIIEFSELGE-FIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQ  192 (264)
T ss_pred             CCCHHHHHHHHHHHHHHcCCch-hhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHC
Confidence            1222    23456778888864 56788999999999999999999999999999999999999998888877754   3


Q ss_pred             CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376          194 QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  235 (239)
Q Consensus       194 ~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  235 (239)
                      +.|||++||+++++..+||++++|++|++. ..|+++++...
T Consensus       193 g~tiIiisH~~~~i~~~~d~i~~l~~G~i~-~~g~~~~~~~~  233 (264)
T PRK13546        193 NKTIFFVSHNLGQVRQFCTKIAWIEGGKLK-DYGELDDVLPK  233 (264)
T ss_pred             CCEEEEEcCCHHHHHHHcCEEEEEECCEEE-EeCCHHHHHHH
Confidence            679999999999999999999999999997 57888876554

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=100.00  E-value=1.2e-44  Score=341.49  Aligned_cols=201  Identities=23%  Similarity=0.393  Sum_probs=168.4

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV   96 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~   96 (239)
                      .++++|++|+|+++..+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.+++.           ..++|
T Consensus       334 ~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~  413 (588)
T PRK13657        334 AVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAV  413 (588)
T ss_pred             eEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEE
Confidence            5999999999975456899999999999999999999999999999999999999999998873           36999


Q ss_pred             EeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhccCC
Q 026376           97 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKKP  166 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~~~p  166 (239)
                      ++|++..   +..+..+++....+..+++++.++++.+++.+...          ......||||||||++|||||+++|
T Consensus       414 v~Q~~~l---f~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~  490 (588)
T PRK13657        414 VFQDAGL---FNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDP  490 (588)
T ss_pred             EecCccc---ccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence            9999742   34566666643333455777888888777643211          1224579999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          167 HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       167 ~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      ++|||||||++||+.+...+.+.+.+.  ++|+|+|||+.+.+. .||++++|++|++. ..|+++++.
T Consensus       491 ~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~-~~D~ii~l~~G~i~-~~g~~~~l~  557 (588)
T PRK13657        491 PILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVR-NADRILVFDNGRVV-ESGSFDELV  557 (588)
T ss_pred             CEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHH-hCCEEEEEECCEEE-EeCCHHHHH
Confidence            999999999999999999999888764  579999999999876 69999999999997 578877764

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=100.00  E-value=9e-45  Score=293.73  Aligned_cols=161  Identities=29%  Similarity=0.434  Sum_probs=134.1

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------eEEE
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VRIA   95 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~~~   95 (239)
                      ++++|++++|+ ++.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.+++.             ..++
T Consensus         1 i~~~~l~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~   79 (178)
T cd03229           1 LELKNVSKRYG-QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG   79 (178)
T ss_pred             CEEEEEEEEEC-CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence            46899999995 457999999999999999999999999999999999999999999987652             2367


Q ss_pred             EEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 026376           96 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS  175 (239)
Q Consensus        96 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt  175 (239)
                      |++|++..  ....+..+++.                   +          .||||||||++|||||+.+|+++||||||
T Consensus        80 ~~~q~~~~--~~~~t~~~~l~-------------------~----------~lS~G~~qr~~la~al~~~p~llilDEP~  128 (178)
T cd03229          80 MVFQDFAL--FPHLTVLENIA-------------------L----------GLSGGQQQRVALARALAMDPDVLLLDEPT  128 (178)
T ss_pred             EEecCCcc--CCCCCHHHhee-------------------e----------cCCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence            77776421  11112211110                   0          09999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCe
Q 026376          176 NHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGK  221 (239)
Q Consensus       176 ~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~  221 (239)
                      ++||+.++..+.+.+.+.    +.|+|++|||++++..+||++++|++|+
T Consensus       129 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~  178 (178)
T cd03229         129 SALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK  178 (178)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence            999999999888877543    5699999999999999999999999884

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=4.8e-45  Score=337.42  Aligned_cols=200  Identities=23%  Similarity=0.338  Sum_probs=160.3

Q ss_pred             CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-CceeEEecCc------------
Q 026376           25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-SSGTVFRSAK------------   91 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-~~G~i~~~~~------------   91 (239)
                      ..++|+++|+++.|+ +..+|+|+||+|.+||+++|+||||||||||+|+|+|+.+| ++|+|++++.            
T Consensus       257 ~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~  335 (490)
T PRK10938        257 NEPRIVLNNGVVSYN-DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIK  335 (490)
T ss_pred             CCceEEEeceEEEEC-CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHH
Confidence            356899999999995 45689999999999999999999999999999999998876 6999988652            


Q ss_pred             eEEEEEeeccCCCCCCCCcHHHHHHH-h------CCCC---cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 026376           92 VRIAVFSQHHVDGLDLSSNPLLYMMR-C------FPGV---PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI  161 (239)
Q Consensus        92 ~~~~~~~q~~~~~~~~~~~~~~~~~~-~------~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lara  161 (239)
                      ..++|++|++........+....+.. .      ....   ..+++.++++.+++.+...++++.+|||||||||+||||
T Consensus       336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~a  415 (490)
T PRK10938        336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRA  415 (490)
T ss_pred             hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHH
Confidence            24899999753222111122222111 0      0011   134678899999997435678899999999999999999


Q ss_pred             hccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CC-EEEEEecCHHHHhh-hcCeEEEEeCCeEEee
Q 026376          162 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QG-GILMVSHDEHLISG-SVEELWVVSEGKATPF  225 (239)
Q Consensus       162 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~-tii~vsHd~~~~~~-~~d~i~~l~~G~i~~~  225 (239)
                      |+.+|++|||||||+|||+.++..+.+.|.+.   +. |||+||||++++.. +||++++|++|+++.+
T Consensus       416 l~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~  484 (490)
T PRK10938        416 LVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY  484 (490)
T ss_pred             HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence            99999999999999999999999988877654   33 69999999999987 5999999999998643

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=4.7e-45  Score=338.94  Aligned_cols=201  Identities=20%  Similarity=0.295  Sum_probs=162.1

Q ss_pred             CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------e
Q 026376           25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------V   92 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~   92 (239)
                      ++++|+++|+++      .+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++.            .
T Consensus       265 ~~~~l~~~~l~~------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~  338 (510)
T PRK15439        265 GAPVLTVEDLTG------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLAR  338 (510)
T ss_pred             CCceEEEeCCCC------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhC
Confidence            456899999983      1589999999999999999999999999999999999999999988763            2


Q ss_pred             EEEEEeeccC-CCCCCCCcHHHHHHH------hC--C-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHh
Q 026376           93 RIAVFSQHHV-DGLDLSSNPLLYMMR------CF--P-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT  162 (239)
Q Consensus        93 ~~~~~~q~~~-~~~~~~~~~~~~~~~------~~--~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral  162 (239)
                      .++|++|++. ..+....+...++..      ..  . ....+.+.++++.+++.....++++.+|||||||||+|||||
T Consensus       339 ~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al  418 (510)
T PRK15439        339 GLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCL  418 (510)
T ss_pred             CcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHH
Confidence            4899999742 112222233333211      01  0 112235778999999962346788999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376          163 FKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       163 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                      +.+|++|||||||+|||+.++..+.+.+++   .+.|||+||||++++.++||++++|++|+++ ..|+.+++
T Consensus       419 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~-~~~~~~~~  490 (510)
T PRK15439        419 EASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEIS-GALTGAAI  490 (510)
T ss_pred             hhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEEccccC
Confidence            999999999999999999999988887765   4679999999999999999999999999997 45666554

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-44  Score=324.72  Aligned_cols=201  Identities=26%  Similarity=0.414  Sum_probs=175.4

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV   96 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~   96 (239)
                      .|+++||++.|+.++++|+++||+|++||.+||+|+|||||||++|+|.++.. ++|+|.++|.           ..|||
T Consensus       351 ~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~  429 (591)
T KOG0057|consen  351 SIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGV  429 (591)
T ss_pred             cEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeE
Confidence            49999999999766679999999999999999999999999999999999999 9999999884           35999


Q ss_pred             EeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccC----------CCCCCChHHHHHHHHHHHhccCC
Q 026376           97 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ----------PMYTLSGGQKSRVAFAKITFKKP  166 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgGqkqrv~laral~~~p  166 (239)
                      +||+...   +..+.+.++....+....+++.++.+++++++...+.          +...|||||||||+||||++.+|
T Consensus       430 VPQd~~L---FndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda  506 (591)
T KOG0057|consen  430 VPQDSVL---FNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDA  506 (591)
T ss_pred             eCCcccc---cchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCC
Confidence            9998642   4456777775545567788999999999997543322          34579999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          167 HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       167 ~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      +|+++|||||+||.++..++++.+.+.  ++|+|+|-|+++.+.. ||+|+++++|++. ..|+.+++..
T Consensus       507 ~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~-e~gth~ell~  574 (591)
T KOG0057|consen  507 PILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKD-FDKIIVLDNGTVK-EYGTHSELLA  574 (591)
T ss_pred             CeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhc-CCEEEEEECCeeE-EeccHHHHhh
Confidence            999999999999999999999988763  5799999999999985 9999999999997 5699988766

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=9.2e-45  Score=336.38  Aligned_cols=200  Identities=23%  Similarity=0.315  Sum_probs=161.8

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eE
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VR   93 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~   93 (239)
                      +++++++|+++      .+|+++||+|.+||+++|+||||||||||+|+|+|+++|++|+|.+++.            ..
T Consensus       255 ~~~l~~~~l~~------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~  328 (501)
T PRK10762        255 EVRLKVDNLSG------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG  328 (501)
T ss_pred             CcEEEEeCccc------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence            45899999984      2689999999999999999999999999999999999999999998762            24


Q ss_pred             EEEEeeccC-CCCCCCCcHHHHHHH----hCC------C--CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 026376           94 IAVFSQHHV-DGLDLSSNPLLYMMR----CFP------G--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK  160 (239)
Q Consensus        94 ~~~~~q~~~-~~~~~~~~~~~~~~~----~~~------~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lar  160 (239)
                      ++|++|++. ..+....+...++..    ...      .  ...+++.++++.+++.....++++.+|||||||||+|||
T Consensus       329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~  408 (501)
T PRK10762        329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIAR  408 (501)
T ss_pred             CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHH
Confidence            899999852 112222333333321    000      0  113457889999999533568899999999999999999


Q ss_pred             HhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376          161 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       161 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                      ||+.+|++|||||||+|||+.++..+.+.++++   +.|||++|||++++..+||++++|++|+++ ..++++++
T Consensus       409 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~-~~~~~~~~  482 (501)
T PRK10762        409 GLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRIS-GEFTREQA  482 (501)
T ss_pred             HHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEE-EEeccccC
Confidence            999999999999999999999999888777653   569999999999999999999999999986 45655544

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=100.00  E-value=1.4e-44  Score=339.70  Aligned_cols=203  Identities=27%  Similarity=0.457  Sum_probs=171.0

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV   96 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~   96 (239)
                      .++++|++|+|++++++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+++.           ..+++
T Consensus       328 ~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~  407 (567)
T COG1132         328 SIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGI  407 (567)
T ss_pred             eEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccE
Confidence            4999999999975567999999999999999999999999999999999999999999999763           46999


Q ss_pred             EeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhccCC
Q 026376           97 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKKP  166 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~~~p  166 (239)
                      ++|++..   +..+...++....+..+++++.++++..++.+...          ......||||||||++||||++++|
T Consensus       408 V~Qd~~L---F~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~  484 (567)
T COG1132         408 VSQDPLL---FSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNP  484 (567)
T ss_pred             Eccccee---ecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence            9999753   23566677654444456778888887776543222          1234579999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376          167 HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  235 (239)
Q Consensus       167 ~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  235 (239)
                      ++|+||||||+||.++...+.+.+.+.  ++|+|+|+|++..+.. ||+|++|++|+++ ..|+++++...
T Consensus       485 ~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~-aD~IiVl~~G~i~-e~G~h~eLl~~  553 (567)
T COG1132         485 PILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN-ADRIIVLDNGRIV-ERGTHEELLAK  553 (567)
T ss_pred             CEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHh-CCEEEEEECCEEE-EecCHHHHHHc
Confidence            999999999999999999998888643  4599999999999986 9999999999987 68999987553

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-44  Score=334.05  Aligned_cols=205  Identities=18%  Similarity=0.250  Sum_probs=161.9

Q ss_pred             CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce------------
Q 026376           25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------------   92 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------------   92 (239)
                      .+++|+++|+++.|   ..+|+++||+|.+||+++|+||||||||||+++|+|+.+|++|+|.+++..            
T Consensus       247 ~~~~i~~~~l~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~  323 (491)
T PRK10982        247 GEVILEVRNLTSLR---QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH  323 (491)
T ss_pred             CCcEEEEeCccccc---CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHC
Confidence            34689999999975   258999999999999999999999999999999999999999999987631            


Q ss_pred             EEEEEeeccCC-CCCCCCcH-----HHHHHHh---CC--C--CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHH
Q 026376           93 RIAVFSQHHVD-GLDLSSNP-----LLYMMRC---FP--G--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFA  159 (239)
Q Consensus        93 ~~~~~~q~~~~-~~~~~~~~-----~~~~~~~---~~--~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la  159 (239)
                      .++|++|++.. .+....+.     ...+...   ..  .  .....+.++++.+++.....++++.+|||||||||+||
T Consensus       324 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la  403 (491)
T PRK10982        324 GFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIG  403 (491)
T ss_pred             CCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHH
Confidence            28899997421 11111111     1111111   00  0  11345678899999853346889999999999999999


Q ss_pred             HHhccCCCEEEEeCCCCCCCHHHHHHHHHHH---hhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          160 KITFKKPHIILLDEPSNHLDLDAVEALIQGL---VLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       160 ral~~~p~llllDEPt~~LD~~~~~~l~~~l---~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      ||++.+|+||||||||+|||+.++..+++.+   .+.+.|||++|||++++..+||++++|++|+++ ..++.++|.
T Consensus       404 ~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~-~~~~~~~~~  479 (491)
T PRK10982        404 RWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVA-GIVDTKTTT  479 (491)
T ss_pred             HHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEE-EEEccccCC
Confidence            9999999999999999999999999887766   445779999999999999999999999999997 344444443

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=6.9e-45  Score=305.04  Aligned_cols=183  Identities=25%  Similarity=0.378  Sum_probs=157.2

Q ss_pred             CeEEEEeeEEEcCCC--------CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEe
Q 026376           27 PIISFSDASFGYPGG--------PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFS   98 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~--------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~   98 (239)
                      ++++++|+++.|+-+        ..+++||||+|++||+++|+|+||||||||-|+|+|+++|++|+|++++...     
T Consensus         3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i-----   77 (268)
T COG4608           3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDI-----   77 (268)
T ss_pred             ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcch-----
Confidence            579999999999532        2689999999999999999999999999999999999999999999876520     


Q ss_pred             eccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 026376           99 QHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL  178 (239)
Q Consensus        99 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~L  178 (239)
                          ..  +.           .....+++.++|+.+|+..+...+.+++|||||+||++|||||+.+|+++++|||+|+|
T Consensus        78 ----~~--~~-----------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaL  140 (268)
T COG4608          78 ----TK--LS-----------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSAL  140 (268)
T ss_pred             ----hh--cc-----------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhc
Confidence                00  00           12234678999999999888889999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376          179 DLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       179 D~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                      |...+.++++.+.+    .+.|.+++|||+..+..+|||+.+|..|++++ .|+.+++
T Consensus       141 DvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE-~g~~~~~  197 (268)
T COG4608         141 DVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVE-IGPTEEV  197 (268)
T ss_pred             chhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeE-ecCHHHH
Confidence            99888877776654    36699999999999999999999999999984 5655543

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=100.00  E-value=5e-44  Score=305.18  Aligned_cols=201  Identities=16%  Similarity=0.219  Sum_probs=158.9

Q ss_pred             CeEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376           27 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI   94 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~   94 (239)
                      ..|+++|++++|++. ..+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++.           ..+
T Consensus        18 ~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i   97 (257)
T cd03288          18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRL   97 (257)
T ss_pred             ceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhE
Confidence            469999999999642 46899999999999999999999999999999999999999999998763           258


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhc-----------CCCcccccCCCCCCChHHHHHHHHHHHhc
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF-----------GVTGNLALQPMYTLSGGQKSRVAFAKITF  163 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgGqkqrv~laral~  163 (239)
                      +|++|++.. +  ..+...++... .......+.++++.+           ++.. ..+.++.+||+||+||++|||||+
T Consensus        98 ~~v~q~~~l-~--~~tv~~nl~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~-~~~~~~~~LS~G~~qrl~laral~  172 (257)
T cd03288          98 SIILQDPIL-F--SGSIRFNLDPE-CKCTDDRLWEALEIAQLKNMVKSLPGGLDA-VVTEGGENFSVGQRQLFCLARAFV  172 (257)
T ss_pred             EEECCCCcc-c--ccHHHHhcCcC-CCCCHHHHHHHHHHhCcHHHHhhcccccCc-EeccCCCcCCHHHHHHHHHHHHHh
Confidence            999998632 1  22333322111 111122333333333           3332 234567899999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          164 KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      .+|++|||||||++||+.++..+.+.+.+.  +.|||++||+++.+.. ||++++|++|+++ ..|+++++.+
T Consensus       173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~dri~~l~~G~i~-~~g~~~~~~~  243 (257)
T cd03288         173 RKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILD-ADLVLVLSRGILV-ECDTPENLLA  243 (257)
T ss_pred             cCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHh-CCEEEEEECCEEE-EeCCHHHHHh
Confidence            999999999999999999999888877653  5699999999999985 9999999999997 6788887754

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=100.00  E-value=2.9e-44  Score=295.93  Aligned_cols=172  Identities=24%  Similarity=0.374  Sum_probs=142.1

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC--cCCCceeEEecCc------------eEE
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE--LQPSSGTVFRSAK------------VRI   94 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl--~~p~~G~i~~~~~------------~~~   94 (239)
                      ++++|++++|+ +..+|+|+||++.+||+++|+|+||||||||+++|+|+  .+|++|+|.+++.            ..+
T Consensus         1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i   79 (200)
T cd03217           1 LEIKDLHVSVG-GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI   79 (200)
T ss_pred             CeEEEEEEEeC-CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence            46899999995 45799999999999999999999999999999999999  5899999998763            137


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP  174 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEP  174 (239)
                      +|++|++...  ...+                +.+.+          .....+|||||+||++|||||+.+|++||||||
T Consensus        80 ~~v~q~~~~~--~~~~----------------~~~~l----------~~~~~~LS~G~~qrv~laral~~~p~illlDEP  131 (200)
T cd03217          80 FLAFQYPPEI--PGVK----------------NADFL----------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEP  131 (200)
T ss_pred             EEeecChhhc--cCcc----------------HHHHH----------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            8888875311  1111                11111          123368999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhh-hcCeEEEEeCCeEEeeCCChh
Q 026376          175 SNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISG-SVEELWVVSEGKATPFHGTFH  230 (239)
Q Consensus       175 t~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~-~~d~i~~l~~G~i~~~~g~~~  230 (239)
                      |++||+.++..+.+.|.+.   +.|||++||+++++.. +||++++|++|++. ..|+.+
T Consensus       132 t~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~-~~~~~~  190 (200)
T cd03217         132 DSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIV-KSGDKE  190 (200)
T ss_pred             CccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEE-EEccHH
Confidence            9999999999888877654   5699999999999988 79999999999997 567544

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=100.00  E-value=4.5e-44  Score=298.27  Aligned_cols=187  Identities=24%  Similarity=0.335  Sum_probs=148.9

Q ss_pred             EEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------------eEE
Q 026376           30 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VRI   94 (239)
Q Consensus        30 ~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~~~   94 (239)
                      .+.|++++|+++..+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.               ..+
T Consensus         2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i   81 (218)
T cd03290           2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV   81 (218)
T ss_pred             eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence            57899999975567999999999999999999999999999999999999999999988652               248


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcc----------cccCCCCCCChHHHHHHHHHHHhcc
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITFK  164 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkqrv~laral~~  164 (239)
                      +|++|++.. +  ..+...++.... .....+..++++.+++.+.          ..++++..||||||||++|||||+.
T Consensus        82 ~~~~q~~~~-~--~~t~~~nl~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~  157 (218)
T cd03290          82 AYAAQKPWL-L--NATVEENITFGS-PFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ  157 (218)
T ss_pred             EEEcCCCcc-c--cccHHHHHhhcC-cCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh
Confidence            999998642 1  234455443221 1223344556666665321          1235688999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHH-----HHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCe
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQ-----GLVLFQGGILMVSHDEHLISGSVEELWVVSEGK  221 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~-----~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~  221 (239)
                      +|++|||||||++||+.++..+++     .+++.+.|||++||+.+++. .||++++|++|.
T Consensus       158 ~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~G~  218 (218)
T cd03290         158 NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP-HADWIIAMKDGS  218 (218)
T ss_pred             CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh-hCCEEEEecCCC
Confidence            999999999999999999887766     33344679999999999986 699999999874

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=100.00  E-value=2.2e-44  Score=338.41  Aligned_cols=201  Identities=23%  Similarity=0.367  Sum_probs=169.4

Q ss_pred             eEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEE
Q 026376           28 IISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA   95 (239)
Q Consensus        28 ~l~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~   95 (239)
                      .++++||+|+|++ +.++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+++.           ..++
T Consensus       330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~  409 (571)
T TIGR02203       330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVA  409 (571)
T ss_pred             eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhce
Confidence            5999999999964 356899999999999999999999999999999999999999999998873           3599


Q ss_pred             EEeeccCCCCCCCCcHHHHHHHhCC-CCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHhcc
Q 026376           96 VFSQHHVDGLDLSSNPLLYMMRCFP-GVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFK  164 (239)
Q Consensus        96 ~~~q~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqrv~laral~~  164 (239)
                      |++|++..   +..+..+++....+ ..+++++.++++.+++.+...+          .....||||||||++||||+++
T Consensus       410 ~v~Q~~~l---f~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~  486 (571)
T TIGR02203       410 LVSQDVVL---FNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLK  486 (571)
T ss_pred             EEccCccc---ccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence            99999752   34456666543322 4667888899998887532221          1235799999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      +|+++||||||++||..+.+.+.+.|.+.  ++|+|+|||+...+. .||+|++|++|++. ..|+++++.
T Consensus       487 ~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~-~~D~ii~l~~g~i~-~~g~~~~l~  555 (571)
T TIGR02203       487 DAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIE-KADRIVVMDDGRIV-ERGTHNELL  555 (571)
T ss_pred             CCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHH-hCCEEEEEeCCEEE-eeCCHHHHH
Confidence            99999999999999999999999988775  569999999998875 69999999999997 578888764

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=100.00  E-value=2.1e-44  Score=345.63  Aligned_cols=203  Identities=25%  Similarity=0.420  Sum_probs=170.1

Q ss_pred             CeEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376           27 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI   94 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~   94 (239)
                      ..++++||+|+|+++ +.+|+|+||+|++|++++|+|+||||||||+|+|+|+++|++|+|.+++.           ..+
T Consensus       454 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i  533 (694)
T TIGR01846       454 GAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQM  533 (694)
T ss_pred             CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhC
Confidence            359999999999643 46899999999999999999999999999999999999999999998874           358


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHhcc
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITFK  164 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqrv~laral~~  164 (239)
                      +|++|++..   +..+..+++....+..+.+++.++++..++.+..          ......+||||||||++|||||++
T Consensus       534 ~~v~q~~~l---f~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~  610 (694)
T TIGR01846       534 GVVLQENVL---FSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG  610 (694)
T ss_pred             eEEccCCee---hhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHh
Confidence            999998642   3345666664333345677777888777764322          123357899999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      +|++|||||||++||+.+...+.+.+.+.  +.|+|++||+++.+.. ||++++|++|+++ ..|+++++.+
T Consensus       611 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~ii~l~~G~i~-~~g~~~~l~~  680 (694)
T TIGR01846       611 NPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRA-CDRIIVLEKGQIA-ESGRHEELLA  680 (694)
T ss_pred             CCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHh-CCEEEEEeCCEEE-EeCCHHHHHH
Confidence            99999999999999999999999988765  5699999999999874 9999999999997 6799888754

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=100.00  E-value=5.5e-44  Score=292.96  Aligned_cols=170  Identities=26%  Similarity=0.366  Sum_probs=141.7

Q ss_pred             eEEEEeeEEEcCC-----CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCc--CCCceeEEecCc--------e
Q 026376           28 IISFSDASFGYPG-----GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--QPSSGTVFRSAK--------V   92 (239)
Q Consensus        28 ~l~~~~l~~~y~~-----~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~--~p~~G~i~~~~~--------~   92 (239)
                      .|+++|++++|++     ...+|+++||++++||+++|+||||||||||+++|+|++  +|++|+|.+++.        .
T Consensus         3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~   82 (194)
T cd03213           3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK   82 (194)
T ss_pred             EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence            4899999999964     256999999999999999999999999999999999999  999999988763        3


Q ss_pred             EEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376           93 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD  172 (239)
Q Consensus        93 ~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD  172 (239)
                      .++|++|++..  ....+..+++...             ..           ..+||||||||++|||||+.+|+++|||
T Consensus        83 ~i~~~~q~~~~--~~~~t~~~~i~~~-------------~~-----------~~~LS~G~~qrv~laral~~~p~illlD  136 (194)
T cd03213          83 IIGYVPQDDIL--HPTLTVRETLMFA-------------AK-----------LRGLSGGERKRVSIALELVSNPSLLFLD  136 (194)
T ss_pred             eEEEccCcccC--CCCCcHHHHHHHH-------------HH-----------hccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            58899987532  1122333322100             00           0189999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHH-HHhhhcCeEEEEeCCeEE
Q 026376          173 EPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEH-LISGSVEELWVVSEGKAT  223 (239)
Q Consensus       173 EPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~-~~~~~~d~i~~l~~G~i~  223 (239)
                      |||++||+.++..+.+.+.++   +.|||++|||++ .+..+||++++|++|++.
T Consensus       137 EP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~  191 (194)
T cd03213         137 EPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVI  191 (194)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEE
Confidence            999999999999888877653   569999999996 788899999999999986

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=100.00  E-value=2.7e-44  Score=305.37  Aligned_cols=193  Identities=25%  Similarity=0.366  Sum_probs=157.0

Q ss_pred             EEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEEEe
Q 026376           30 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVFS   98 (239)
Q Consensus        30 ~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~~~   98 (239)
                      +++||++.     .+|+|+||+|++|++++|+||||||||||+++|+|++++ +|+|.+++.           ..++|++
T Consensus         2 ~~~~l~~~-----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~   75 (248)
T PRK03695          2 QLNDVAVS-----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYLS   75 (248)
T ss_pred             cccccchh-----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEec
Confidence            56788875     268999999999999999999999999999999999864 899998763           2389999


Q ss_pred             eccCCCCCCCCcHHHHHHHhC-CCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc-------CC
Q 026376           99 QHHVDGLDLSSNPLLYMMRCF-PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK-------KP  166 (239)
Q Consensus        99 q~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~-------~p  166 (239)
                      |++....  ..+...++.... ...    ..+++.++++.+++.+ ..++++.+||||||||++|||||+.       +|
T Consensus        76 q~~~~~~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p  152 (248)
T PRK03695         76 QQQTPPF--AMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDD-KLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAG  152 (248)
T ss_pred             ccCccCC--CccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHh-HhcCCcccCCHHHHHHHHHHHHHhccccccCCCC
Confidence            9863222  234444433211 111    1346788999999964 4578899999999999999999997       67


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376          167 HIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       167 ~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                      ++|||||||++||+.++..+.+.+++.   +.|||++|||++++..+||++++|++|+++ ..|+++++
T Consensus       153 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~  220 (248)
T PRK03695        153 QLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLL-ASGRRDEV  220 (248)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence            999999999999999999888877643   569999999999999999999999999997 57887765

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=2.9e-44  Score=295.81  Aligned_cols=183  Identities=23%  Similarity=0.311  Sum_probs=150.6

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVF   97 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~~~   97 (239)
                      ||+++|++++|+ +..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|++++.          ..++|+
T Consensus         1 ml~~~~l~~~~~-~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~   79 (200)
T PRK13540          1 MLDVIELDFDYH-DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFV   79 (200)
T ss_pred             CEEEEEEEEEeC-CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEe
Confidence            478999999995 456999999999999999999999999999999999999999999998763          258999


Q ss_pred             eeccCCCCCCCCcHHHHHHHh-CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 026376           98 SQHHVDGLDLSSNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN  176 (239)
Q Consensus        98 ~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~  176 (239)
                      +|++..  ....+...++... ........+.++++.+++.. ..++++.+|||||+||++||||++.+|++|||||||+
T Consensus        80 ~q~~~~--~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~  156 (200)
T PRK13540         80 GHRSGI--NPYLTLRENCLYDIHFSPGAVGITELCRLFSLEH-LIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLV  156 (200)
T ss_pred             cccccc--CcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCch-hhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence            987532  2223444443211 11123456788999999964 4578889999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEE
Q 026376          177 HLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELW  215 (239)
Q Consensus       177 ~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~  215 (239)
                      +||+.++..+.+.|++.   +.|||++||+..++.. ||.-+
T Consensus       157 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~-~d~~~  197 (200)
T PRK13540        157 ALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK-ADYEE  197 (200)
T ss_pred             ccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc-cchhh
Confidence            99999999988887753   5699999999999975 77643

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.2e-44  Score=332.92  Aligned_cols=203  Identities=26%  Similarity=0.417  Sum_probs=171.4

Q ss_pred             CeEEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eE
Q 026376           27 PIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR   93 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~   93 (239)
                      ..++++||+|.||.+  .++|+|+||+|+|||++|||||||+||||+.++|-.++.|++|+|..++.           ..
T Consensus       464 G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~  543 (716)
T KOG0058|consen  464 GVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRK  543 (716)
T ss_pred             ceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHH
Confidence            369999999999865  35999999999999999999999999999999999999999999998874           36


Q ss_pred             EEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHhc
Q 026376           94 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITF  163 (239)
Q Consensus        94 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqrv~laral~  163 (239)
                      ||++.|+|..   +..+..+++.......++++++.+.+..+.+++.          ...+..+||||||||+||||||+
T Consensus       544 Ig~V~QEPvL---Fs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALl  620 (716)
T KOG0058|consen  544 IGLVGQEPVL---FSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALL  620 (716)
T ss_pred             eeeeecccee---ecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHh
Confidence            9999999853   3455666665444466777787777765543222          12345689999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          164 KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      ++|.||||||.||+||.++...+.+.|.+.  +.|||+|.|.+..++. ||+|+++++|+++ ..|+++|+..
T Consensus       621 r~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~-E~G~h~eLl~  691 (716)
T KOG0058|consen  621 RNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRH-ADQIVVIDKGRVV-EMGTHDELLS  691 (716)
T ss_pred             cCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhh-ccEEEEEcCCeEE-ecccHHHHhh
Confidence            999999999999999999988888888653  5799999999999984 9999999999997 5798888754

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=6.8e-44  Score=291.94  Aligned_cols=170  Identities=23%  Similarity=0.327  Sum_probs=140.8

Q ss_pred             eEEEEeeEEEcCC---CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCc--CCCceeEEecCc-------eEEE
Q 026376           28 IISFSDASFGYPG---GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--QPSSGTVFRSAK-------VRIA   95 (239)
Q Consensus        28 ~l~~~~l~~~y~~---~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~--~p~~G~i~~~~~-------~~~~   95 (239)
                      .|+++|+++.|++   ++.+|+++||++++||+++|+||||||||||+++|+|+.  +|++|+|.+++.       ..++
T Consensus         3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~   82 (192)
T cd03232           3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG   82 (192)
T ss_pred             EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence            6899999999964   256999999999999999999999999999999999986  489999998763       3589


Q ss_pred             EEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 026376           96 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS  175 (239)
Q Consensus        96 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt  175 (239)
                      |++|++..  ....+..+++...          ..+              .+|||||+||++|||||+.+|++|||||||
T Consensus        83 ~~~q~~~~--~~~~tv~~~l~~~----------~~~--------------~~LSgGe~qrv~la~al~~~p~vlllDEP~  136 (192)
T cd03232          83 YVEQQDVH--SPNLTVREALRFS----------ALL--------------RGLSVEQRKRLTIGVELAAKPSILFLDEPT  136 (192)
T ss_pred             EecccCcc--ccCCcHHHHHHHH----------HHH--------------hcCCHHHhHHHHHHHHHhcCCcEEEEeCCC
Confidence            99987532  1222333333210          000              089999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHhhc---CCEEEEEecCHH-HHhhhcCeEEEEeC-CeEE
Q 026376          176 NHLDLDAVEALIQGLVLF---QGGILMVSHDEH-LISGSVEELWVVSE-GKAT  223 (239)
Q Consensus       176 ~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~-~~~~~~d~i~~l~~-G~i~  223 (239)
                      ++||+.++..+.+.+.+.   +.|||++||+++ .+..+||++++|++ |+++
T Consensus       137 ~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~  189 (192)
T cd03232         137 SGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTV  189 (192)
T ss_pred             cCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEE
Confidence            999999999988877653   569999999998 47789999999999 9986

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=100.00  E-value=7.4e-44  Score=335.78  Aligned_cols=203  Identities=18%  Similarity=0.327  Sum_probs=166.8

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEE
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA   95 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~   95 (239)
                      ..++++|++|+|++++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.           ..++
T Consensus       333 ~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~  412 (585)
T TIGR01192       333 GAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIA  412 (585)
T ss_pred             CeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence            35999999999975456899999999999999999999999999999999999999999998763           3589


Q ss_pred             EEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcc----------cccCCCCCCChHHHHHHHHHHHhccC
Q 026376           96 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITFKK  165 (239)
Q Consensus        96 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkqrv~laral~~~  165 (239)
                      |++|++..   +..+..+++....+..+.+++.++++..++.+.          ........||||||||++|||||+.+
T Consensus       413 ~v~q~~~l---f~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~  489 (585)
T TIGR01192       413 TVFQDAGL---FNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKN  489 (585)
T ss_pred             EEccCCcc---CcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence            99999742   234556665433233445566666665544321          12345678999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          166 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       166 p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |++|||||||++||+.+...+.+.+.+.  +.|||+|||+++.+. .||++++|++|+++ ..|+++++.+
T Consensus       490 p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~  558 (585)
T TIGR01192       490 APILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVR-NADLVLFLDQGRLI-EKGSFQELIQ  558 (585)
T ss_pred             CCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHH-cCCEEEEEECCEEE-EECCHHHHHH
Confidence            9999999999999999999998888764  569999999999986 59999999999997 5798887754

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=100.00  E-value=8e-44  Score=333.10  Aligned_cols=204  Identities=25%  Similarity=0.407  Sum_probs=166.6

Q ss_pred             CeEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376           27 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI   94 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~   94 (239)
                      ..++++|++|+|+++ +.+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+++.           ..+
T Consensus       315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i  394 (544)
T TIGR01842       315 GHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHI  394 (544)
T ss_pred             CeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhhe
Confidence            359999999999643 57899999999999999999999999999999999999999999998763           359


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCc----------ccccCCCCCCChHHHHHHHHHHHhcc
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG----------NLALQPMYTLSGGQKSRVAFAKITFK  164 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkqrv~laral~~  164 (239)
                      +|++|++..   +..+..+++....+..+.+++.++++..++.+          ........+||||||||++|||||++
T Consensus       395 ~~v~q~~~l---f~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~  471 (544)
T TIGR01842       395 GYLPQDVEL---FPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYG  471 (544)
T ss_pred             EEecCCccc---ccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhc
Confidence            999998742   23455555542222344556666665554421          12234567899999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  235 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  235 (239)
                      +|++|||||||++||+++...+.+.+.+.   +.|+|++||+++.+. .||++++|++|+++ ..|+++++.+.
T Consensus       472 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~~  543 (544)
T TIGR01842       472 DPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLG-CVDKILVLQDGRIA-RFGERDEVLAK  543 (544)
T ss_pred             CCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-eeCCHHHHhhc
Confidence            99999999999999999999998888764   469999999999775 69999999999997 68999887653

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=100.00  E-value=7.5e-44  Score=286.57  Aligned_cols=157  Identities=31%  Similarity=0.563  Sum_probs=133.2

Q ss_pred             EEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce-----------EEEE
Q 026376           29 ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------RIAV   96 (239)
Q Consensus        29 l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------~~~~   96 (239)
                      |+++|++++|++. ..+++++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++..           .++|
T Consensus         1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (171)
T cd03228           1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY   80 (171)
T ss_pred             CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence            4789999999643 268999999999999999999999999999999999999999999887632           3677


Q ss_pred             EeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 026376           97 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN  176 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~  176 (239)
                      ++|++.. +  ..+..+++                                ||+|||||++|||||+.+|++|||||||+
T Consensus        81 ~~~~~~~-~--~~t~~e~l--------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~  125 (171)
T cd03228          81 VPQDPFL-F--SGTIRENI--------------------------------LSGGQRQRIAIARALLRDPPILILDEATS  125 (171)
T ss_pred             EcCCchh-c--cchHHHHh--------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence            7776421 1  11111110                                99999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCe
Q 026376          177 HLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGK  221 (239)
Q Consensus       177 ~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~  221 (239)
                      +||+.++..+.+.+.+.  +.|||++|||++++.. ||++++|++|+
T Consensus       126 gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~~~~l~~g~  171 (171)
T cd03228         126 ALDPETEALILEALRALAKGKTVIVIAHRLSTIRD-ADRIIVLDDGR  171 (171)
T ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh-CCEEEEEcCCC
Confidence            99999999988888654  4599999999999987 99999999885

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=1.5e-43  Score=292.20  Aligned_cols=176  Identities=16%  Similarity=0.227  Sum_probs=142.7

Q ss_pred             eEEEEeeEEEcCC---CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC---CCceeEEecCc----------
Q 026376           28 IISFSDASFGYPG---GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ---PSSGTVFRSAK----------   91 (239)
Q Consensus        28 ~l~~~~l~~~y~~---~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~~----------   91 (239)
                      .+.++|++|.|+.   +..+|+++||+|++||+++|+||||||||||+++|+|+++   |++|+|.+++.          
T Consensus         3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~   82 (202)
T cd03233           3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP   82 (202)
T ss_pred             eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence            5789999999963   3569999999999999999999999999999999999999   89999987663          


Q ss_pred             eEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 026376           92 VRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL  171 (239)
Q Consensus        92 ~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llll  171 (239)
                      ..++|++|++..  ....+..+++....      .    +   .     .++++..||+|||||++|||||+.+|++|||
T Consensus        83 ~~i~~~~q~~~~--~~~~tv~~~l~~~~------~----~---~-----~~~~~~~LS~Ge~qrl~laral~~~p~llll  142 (202)
T cd03233          83 GEIIYVSEEDVH--FPTLTVRETLDFAL------R----C---K-----GNEFVRGISGGERKRVSIAEALVSRASVLCW  142 (202)
T ss_pred             ceEEEEeccccc--CCCCcHHHHHhhhh------h----h---c-----cccchhhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence            248899987532  22234444432110      0    0   0     3467889999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHhhc----CCEEEEE-ecCHHHHhhhcCeEEEEeCCeEE
Q 026376          172 DEPSNHLDLDAVEALIQGLVLF----QGGILMV-SHDEHLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       172 DEPt~~LD~~~~~~l~~~l~~~----~~tii~v-sHd~~~~~~~~d~i~~l~~G~i~  223 (239)
                      ||||++||+.++..+.+.+.+.    +.|+|++ +|+.+.+..+||++++|++|+++
T Consensus       143 DEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~  199 (202)
T cd03233         143 DNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQI  199 (202)
T ss_pred             cCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEE
Confidence            9999999999999888877653    3465555 56678888899999999999986

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.1e-43  Score=321.30  Aligned_cols=195  Identities=22%  Similarity=0.319  Sum_probs=164.9

Q ss_pred             CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------e
Q 026376           25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------V   92 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~   92 (239)
                      ..++++++|++|+|+ +..+|++|||++.+||++||+|.||||||||+|+|+|.++|++|+|+++++            .
T Consensus         5 ~~~ll~~~~i~K~Fg-gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~   83 (500)
T COG1129           5 TPPLLELRGISKSFG-GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA   83 (500)
T ss_pred             ccceeeeecceEEcC-CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhC
Confidence            345899999999995 578999999999999999999999999999999999999999999999875            2


Q ss_pred             EEEEEeeccCCCCCCCCcHHHHHHHhC-C-C----Cc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHh
Q 026376           93 RIAVFSQHHVDGLDLSSNPLLYMMRCF-P-G----VP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT  162 (239)
Q Consensus        93 ~~~~~~q~~~~~~~~~~~~~~~~~~~~-~-~----~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral  162 (239)
                      .|..++|+...  ....++.++++... + .    .+    ..++.++|+.+++... .+.++.+||.||||.|+||||+
T Consensus        84 GI~~V~QEl~L--~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~-~~~~v~~LsiaqrQ~VeIArAl  160 (500)
T COG1129          84 GIATVHQELSL--VPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-PDTLVGDLSIAQRQMVEIARAL  160 (500)
T ss_pred             CcEEEeechhc--cCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC-hhhhhhhCCHHHHHHHHHHHHH
Confidence            58999998743  33344555543211 1 1    11    3567789999998633 6789999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376          163 FKKPHIILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       163 ~~~p~llllDEPt~~LD~~~~~~l~~~l~---~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~  223 (239)
                      ..+++|||||||||+|+....+.+++.++   +.|.+||+|||.++++.++||||.+|++|+.+
T Consensus       161 ~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v  224 (500)
T COG1129         161 SFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVV  224 (500)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEe
Confidence            99999999999999999998887766554   55779999999999999999999999999976

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=100.00  E-value=5.5e-43  Score=302.14  Aligned_cols=199  Identities=25%  Similarity=0.393  Sum_probs=155.6

Q ss_pred             CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCC
Q 026376           25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG  104 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~  104 (239)
                      ..+.|+++|+++.  + +.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.+++  .++|++|++...
T Consensus        36 ~~~~l~i~nls~~--~-~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g--~i~yv~q~~~l~  110 (282)
T cd03291          36 DDNNLFFSNLCLV--G-APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG--RISFSSQFSWIM  110 (282)
T ss_pred             CCCeEEEEEEEEe--c-ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC--EEEEEeCccccc
Confidence            3457999999985  2 4589999999999999999999999999999999999999999999877  599999986421


Q ss_pred             CCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcc----------cccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 026376          105 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP  174 (239)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkqrv~laral~~~p~llllDEP  174 (239)
                         ..+...++.... .....++.++++.+++.+.          ...+++.+||||||||++|||||+.+|++||||||
T Consensus       111 ---~~tv~enl~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEP  186 (282)
T cd03291         111 ---PGTIKENIIFGV-SYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP  186 (282)
T ss_pred             ---ccCHHHHhhccc-ccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence               124444443211 1112233444444444221          12234679999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHH-hh--cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          175 SNHLDLDAVEALIQGL-VL--FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       175 t~~LD~~~~~~l~~~l-~~--~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |++||+.++..+.+.+ ..  .+.|||++|||++++. .||++++|++|+++ +.|+++++.+
T Consensus       187 t~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~~~~  247 (282)
T cd03291         187 FGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSY-FYGTFSELQS  247 (282)
T ss_pred             CccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence            9999999988887643 32  2579999999999985 79999999999997 6788877653

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=8.1e-44  Score=334.45  Aligned_cols=191  Identities=25%  Similarity=0.305  Sum_probs=160.4

Q ss_pred             CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCC
Q 026376           25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG  104 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~  104 (239)
                      +.++++++|+++.|+ + ..|+++||+|.+||+++|+||||||||||+|+|+|+++|++|+|.++  ..++|++|++...
T Consensus       337 ~~~~l~~~~ls~~~~-~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~--~~i~y~~Q~~~~~  412 (590)
T PRK13409        337 RETLVEYPDLTKKLG-D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE--LKISYKPQYIKPD  412 (590)
T ss_pred             CceEEEEcceEEEEC-C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe--eeEEEecccccCC
Confidence            356899999999995 3 35899999999999999999999999999999999999999999876  5799999986432


Q ss_pred             CCCCCcHHHHHHHhCCC-CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHH
Q 026376          105 LDLSSNPLLYMMRCFPG-VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV  183 (239)
Q Consensus       105 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~  183 (239)
                        ...++.+++...... .....+.++++.+++. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.++
T Consensus       413 --~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~-~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~  489 (590)
T PRK13409        413 --YDGTVEDLLRSITDDLGSSYYKSEIIKPLQLE-RLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQR  489 (590)
T ss_pred             --CCCcHHHHHHHHhhhcChHHHHHHHHHHCCCH-HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence              333444444321111 1234567899999997 467899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376          184 EALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       184 ~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~  223 (239)
                      ..+.+.|+++    +.|||+||||++++..+||++++|++ ++.
T Consensus       490 ~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~  532 (590)
T PRK13409        490 LAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPG  532 (590)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cce
Confidence            9988877654    67999999999999999999999965 664

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=100.00  E-value=9.9e-44  Score=297.41  Aligned_cols=181  Identities=30%  Similarity=0.454  Sum_probs=148.5

Q ss_pred             EEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------eEEEEEeeccCCCCCCCCcHHHHHHHh-----
Q 026376           50 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------VRIAVFSQHHVDGLDLSSNPLLYMMRC-----  118 (239)
Q Consensus        50 l~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------~~~~~~~q~~~~~~~~~~~~~~~~~~~-----  118 (239)
                      |+|++||+++|+|+||||||||+++|+|+++|++|+|.+++.      ..++|++|++........+...++...     
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~   80 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI   80 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence            578999999999999999999999999999999999999874      359999998643222223444433211     


Q ss_pred             --C--C-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc
Q 026376          119 --F--P-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF  193 (239)
Q Consensus       119 --~--~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  193 (239)
                        .  . ....+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.+.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~  159 (223)
T TIGR03771        81 GWLRRPCVADFAAVRDALRRVGLTE-LADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIEL  159 (223)
T ss_pred             ccccCCcHHHHHHHHHHHHHhCCch-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence              0  0 112345788999999974 557788999999999999999999999999999999999999999988877643


Q ss_pred             ---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          194 ---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       194 ---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                         +.|||++|||++++..+||+++++ +|+++ ..|+++++.
T Consensus       160 ~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~-~~~~~~~~~  200 (223)
T TIGR03771       160 AGAGTAILMTTHDLAQAMATCDRVVLL-NGRVI-ADGTPQQLQ  200 (223)
T ss_pred             HHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEE-eecCHHHhc
Confidence               569999999999999999999999 79997 678887764

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=1.9e-43  Score=361.21  Aligned_cols=207  Identities=23%  Similarity=0.299  Sum_probs=172.7

Q ss_pred             CCeEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEE
Q 026376           26 PPIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRI   94 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~   94 (239)
                      +.+|+++|+++.|+++ +.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|++++.          ..+
T Consensus      1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~I 2014 (2272)
T TIGR01257      1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNM 2014 (2272)
T ss_pred             CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhE
Confidence            4589999999999642 57999999999999999999999999999999999999999999998763          249


Q ss_pred             EEEeeccCCCCCCCCcHHHHHH--HhCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMM--RCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI  168 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~l  168 (239)
                      ||++|.......  .+..+.+.  ....+..    ++.+.++++.+++.+ ..++++++||||||||++||+||+.+|+|
T Consensus      2015 Gy~pQ~~~L~~~--LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~-~~dk~~~~LSGGqKqRLslA~ALi~~P~V 2091 (2272)
T TIGR01257      2015 GYCPQFDAIDDL--LTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSL-YADRLAGTYSGGNKRKLSTAIALIGCPPL 2091 (2272)
T ss_pred             EEEeccccCCCC--CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHH-HhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            999998543222  23333321  1111221    235667899999974 56889999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHHh
Q 026376          169 ILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKML  236 (239)
Q Consensus       169 lllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~  236 (239)
                      |||||||+|||+.+++.+.+.+.+   .+.|||++||++++++.+|||+++|++|++. ..|++++++++.
T Consensus      2092 LLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~-~~Gs~q~Lk~~~ 2161 (2272)
T TIGR01257      2092 VLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQ-CLGTIQHLKSKF 2161 (2272)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHHHh
Confidence            999999999999999998887754   3569999999999999999999999999997 689999887654

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=2.9e-43  Score=359.80  Aligned_cols=207  Identities=22%  Similarity=0.291  Sum_probs=173.7

Q ss_pred             CCeEEEEeeEEEcC-CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEE
Q 026376           26 PPIISFSDASFGYP-GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRI   94 (239)
Q Consensus        26 ~~~l~~~~l~~~y~-~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~   94 (239)
                      .+.|+++||++.|+ +++.+++|+||++.+||+++|+||||||||||+++|+|+++|++|+|.+++.          ..+
T Consensus       926 ~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257       926 VPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred             CceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcE
Confidence            45799999999995 3467999999999999999999999999999999999999999999998763          358


Q ss_pred             EEEeeccCCCCCCCCcHHHHHH--HhCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMM--RCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI  168 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~l  168 (239)
                      ||++|++...  ...++.+.+.  ....+.    .++++.++++.+++.+ ..++++++|||||||||+||+||+.+|+|
T Consensus      1006 G~~pQ~~~L~--~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~-~~~~~~~~LSGGqKQRLsLArALi~~PkV 1082 (2272)
T TIGR01257      1006 GMCPQHNILF--HHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHH-KRNEEAQDLSGGMQRKLSVAIAFVGDAKV 1082 (2272)
T ss_pred             EEEecCCcCC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence            9999986422  2223333332  111121    2346788999999974 56788999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHHh
Q 026376          169 ILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKML  236 (239)
Q Consensus       169 lllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~  236 (239)
                      |||||||+|||+.+++.+.+.|++.  +.|||++|||++++..+|||+++|++|+++ ..|++++++++.
T Consensus      1083 LLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~-~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257      1083 VVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLY-CSGTPLFLKNCF 1151 (2272)
T ss_pred             EEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EecCHHHHHHhc
Confidence            9999999999999999988887664  569999999999999999999999999997 679988876653

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=100.00  E-value=2.4e-43  Score=331.82  Aligned_cols=202  Identities=25%  Similarity=0.412  Sum_probs=168.5

Q ss_pred             eEEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376           28 IISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI   94 (239)
Q Consensus        28 ~l~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~   94 (239)
                      .++++||+++|+++  +.+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+++.           ..+
T Consensus       337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i  416 (576)
T TIGR02204       337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARM  416 (576)
T ss_pred             eEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhc
Confidence            58999999999642  46899999999999999999999999999999999999999999998873           359


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHhcc
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITFK  164 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqrv~laral~~  164 (239)
                      +|++|++..   +..+..+++....+..+.+++.++++.+++.+..          .......||||||||++||||+++
T Consensus       417 ~~~~Q~~~l---f~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~  493 (576)
T TIGR02204       417 ALVPQDPVL---FAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILK  493 (576)
T ss_pred             eEEccCCcc---ccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence            999999752   3456666664333344567788888887764221          112346799999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      +|++||||||||+||+.+.+.+.+.+.+.  +.|+|+|||+.+.+. .||++++|++|+++ ..|+++++.+
T Consensus       494 ~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~-~~d~vi~l~~g~~~-~~g~~~~l~~  563 (576)
T TIGR02204       494 DAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVL-KADRIVVMDQGRIV-AQGTHAELIA  563 (576)
T ss_pred             CCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEE-eeecHHHHHH
Confidence            99999999999999999999888888765  579999999998876 69999999999997 5788887654

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=5.1e-44  Score=346.40  Aligned_cols=204  Identities=27%  Similarity=0.427  Sum_probs=172.7

Q ss_pred             CeEEEEeeEEEcCCCC--ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eE
Q 026376           27 PIISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR   93 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~--~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~   93 (239)
                      ..++++||+|+||.++  .+|+++||+|++|+.++|+|||||||||++++|.+++.|++|+|.+++.           ..
T Consensus       349 g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~  428 (1228)
T KOG0055|consen  349 GEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQ  428 (1228)
T ss_pred             cceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhh
Confidence            4699999999998653  6999999999999999999999999999999999999999999999874           36


Q ss_pred             EEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHhc
Q 026376           94 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITF  163 (239)
Q Consensus        94 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqrv~laral~  163 (239)
                      +|.|.|+|..   +..+..+++....++...+++.++++..+..+..          ......+||||||||+||||||+
T Consensus       429 iglV~QePvl---F~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv  505 (1228)
T KOG0055|consen  429 IGLVSQEPVL---FATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALV  505 (1228)
T ss_pred             cCeeeechhh---hcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHH
Confidence            9999999842   3456667765555556677787777665543211          12234579999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376          164 KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  235 (239)
Q Consensus       164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  235 (239)
                      ++|+|||||||||+||+++...+.+.|.+.  +.|.|+|+|++..+.. ||+|++|++|+++ +.|+++|+.+.
T Consensus       506 ~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-aD~I~v~~~G~Iv-E~G~h~ELi~~  577 (1228)
T KOG0055|consen  506 RNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-ADKIAVMEEGKIV-EQGTHDELIAL  577 (1228)
T ss_pred             hCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-cCEEEEEECCEEE-EecCHHHHHhc
Confidence            999999999999999999999999988764  6799999999999987 9999999999997 68999998653

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=4.7e-43  Score=329.48  Aligned_cols=202  Identities=22%  Similarity=0.344  Sum_probs=167.5

Q ss_pred             eEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEE
Q 026376           28 IISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA   95 (239)
Q Consensus        28 ~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~   95 (239)
                      .++++|++|+|+++ ..+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+++.           ..++
T Consensus       313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~  392 (569)
T PRK10789        313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLA  392 (569)
T ss_pred             cEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheE
Confidence            58999999999643 46899999999999999999999999999999999999999999998763           3589


Q ss_pred             EEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHhccC
Q 026376           96 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITFKK  165 (239)
Q Consensus        96 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqrv~laral~~~  165 (239)
                      |++|++..   +..+..+++....+..+.+++.++++..++.+..          .......||||||||++|||||+++
T Consensus       393 ~v~q~~~l---f~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~  469 (569)
T PRK10789        393 VVSQTPFL---FSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLN  469 (569)
T ss_pred             EEccCCee---ccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence            99998742   2345556654322344566777778777664321          1233568999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          166 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       166 p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |++|||||||++||+++...+.+.+.+.  +.|+|++||+++.+. .||++++|++|++. ..|+++++.+
T Consensus       470 ~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~  538 (569)
T PRK10789        470 AEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALT-EASEILVMQHGHIA-QRGNHDQLAQ  538 (569)
T ss_pred             CCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHH-cCCEEEEEeCCEEE-EecCHHHHHH
Confidence            9999999999999999999999888764  579999999999886 59999999999997 6788877653

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.9e-44  Score=294.77  Aligned_cols=200  Identities=29%  Similarity=0.447  Sum_probs=161.1

Q ss_pred             CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------e
Q 026376           25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------V   92 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~   92 (239)
                      .+++|+++|+++.|+ ++.+|+|||++|++||.++|+|||||||||||++++|.++|++|.+...++            .
T Consensus        28 ~~~li~l~~v~v~r~-gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk  106 (257)
T COG1119          28 NEPLIELKNVSVRRN-GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRK  106 (257)
T ss_pred             CcceEEecceEEEEC-CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHH
Confidence            457899999999995 568999999999999999999999999999999999999999999876542            3


Q ss_pred             EEEEEeeccCCCCCCCCcHHHHHH-------HhCC-C---CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 026376           93 RIAVFSQHHVDGLDLSSNPLLYMM-------RCFP-G---VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI  161 (239)
Q Consensus        93 ~~~~~~q~~~~~~~~~~~~~~~~~-------~~~~-~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lara  161 (239)
                      +||++.-.....+....+..+.+.       ..+. .   ...+++..+++.+|+.+ +++++..+||-||||||.||||
T Consensus       107 ~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~-la~r~~~~LS~Ge~rrvLiaRA  185 (257)
T COG1119         107 RIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH-LADRPFGSLSQGEQRRVLIARA  185 (257)
T ss_pred             HhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhh-hccCchhhcCHhHHHHHHHHHH
Confidence            577775432111111111111110       1111 1   22456778999999975 7899999999999999999999


Q ss_pred             hccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc-----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCC
Q 026376          162 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF-----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHG  227 (239)
Q Consensus       162 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g  227 (239)
                      |+.+|++|||||||+|||...++.+.+.|.+.     ..++|+|||..+++..+.++++.+++|+++ ..|
T Consensus       186 Lv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~-~~g  255 (257)
T COG1119         186 LVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVV-AQG  255 (257)
T ss_pred             HhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCcee-ecc
Confidence            99999999999999999999999998888764     237999999999999999999999999996 444

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.2e-43  Score=283.09  Aligned_cols=194  Identities=26%  Similarity=0.377  Sum_probs=161.1

Q ss_pred             CeEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce------EEEEEee
Q 026376           27 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------RIAVFSQ   99 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------~~~~~~q   99 (239)
                      +++.+++++.+|++. ..+|+|+|++|.+||.++++|||||||||||++++|+.+|+.|+|..+++.      .-|.+||
T Consensus         2 ~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ   81 (259)
T COG4525           2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQ   81 (259)
T ss_pred             ceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEec
Confidence            367889999999653 248999999999999999999999999999999999999999999988763      5799999


Q ss_pred             ccCCCCCCCCcHHHHHHHh--CCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 026376          100 HHVDGLDLSSNPLLYMMRC--FPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE  173 (239)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDE  173 (239)
                      ++.  +.++.+..++....  ..+.    ..+.+.+.+..+|+.+ ..++.+.+|||||||||.|||||+.+|++|+|||
T Consensus        82 ~~~--LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~-~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDE  158 (259)
T COG4525          82 NEA--LLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEG-AEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDE  158 (259)
T ss_pred             cCc--cchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCccc-ccccceEeecchHHHHHHHHHHhhcCcceEeecC
Confidence            863  33445555544321  1122    2345678899999975 4578899999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHH----hhcCCEEEEEecCHHHHhhhcCeEEEEeC--CeEE
Q 026376          174 PSNHLDLDAVEALIQGL----VLFQGGILMVSHDEHLISGSVEELWVVSE--GKAT  223 (239)
Q Consensus       174 Pt~~LD~~~~~~l~~~l----~~~~~tii~vsHd~~~~~~~~d~i~~l~~--G~i~  223 (239)
                      |+++||.-+++.+.+.|    +..++.+++||||.+++.-+++++++|..  |+++
T Consensus       159 PfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv  214 (259)
T COG4525         159 PFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVV  214 (259)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceee
Confidence            99999999888776654    34467899999999999999999999975  6775

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=100.00  E-value=1.6e-43  Score=289.06  Aligned_cols=165  Identities=34%  Similarity=0.532  Sum_probs=133.2

Q ss_pred             CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------eEEEEEeeccCCCCC
Q 026376           40 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VRIAVFSQHHVDGLD  106 (239)
Q Consensus        40 ~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~~~~~~q~~~~~~~  106 (239)
                      +++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.             ..++|++|++...+ 
T Consensus         3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-   81 (190)
T TIGR01166         3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL-   81 (190)
T ss_pred             CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcc-
Confidence            4456999999999999999999999999999999999999999999987652             24899999863111 


Q ss_pred             CCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 026376          107 LSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL  180 (239)
Q Consensus       107 ~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~  180 (239)
                      +..+..+++..  ......    .+++.++++.+++.+ ..++++.+||||||||++|||||+.+|++|||||||++||+
T Consensus        82 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~  160 (190)
T TIGR01166        82 FAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASG-LRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDP  160 (190)
T ss_pred             ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchh-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence            12244443321  111111    245778899999974 56788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhc---CCEEEEEecCHHH
Q 026376          181 DAVEALIQGLVLF---QGGILMVSHDEHL  206 (239)
Q Consensus       181 ~~~~~l~~~l~~~---~~tii~vsHd~~~  206 (239)
                      .++..+.+.+.+.   +.|||++|||+++
T Consensus       161 ~~~~~~~~~l~~~~~~~~tili~sH~~~~  189 (190)
T TIGR01166       161 AGREQMLAILRRLRAEGMTVVISTHDVDL  189 (190)
T ss_pred             HHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence            9999888877653   5699999999875

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=4.8e-43  Score=287.49  Aligned_cols=181  Identities=26%  Similarity=0.323  Sum_probs=146.5

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------eEEEEEeec
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------VRIAVFSQH  100 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------~~~~~~~q~  100 (239)
                      +|+++|++++|+ ++.+++ +||+|++||+++|+|+||||||||+++|+|+.+|++|+|++++.       ..++|++|+
T Consensus         1 ~l~~~~l~~~~~-~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~   78 (195)
T PRK13541          1 MLSLHQLQFNIE-QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHN   78 (195)
T ss_pred             CeEEEEeeEEEC-CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCC
Confidence            478999999995 455655 99999999999999999999999999999999999999998773       247888887


Q ss_pred             cCCCCCCCCcHHHHHHHhC-CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 026376          101 HVDGLDLSSNPLLYMMRCF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD  179 (239)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD  179 (239)
                      +.  +....+..+++.... .....+++.++++.+++.+ ..++++.+||||||||++||||++.+|+++||||||++||
T Consensus        79 ~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD  155 (195)
T PRK13541         79 LG--LKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHD-LLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLS  155 (195)
T ss_pred             cC--CCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHh-hhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence            53  222334444432211 0113456788899999964 4678899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeE
Q 026376          180 LDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEEL  214 (239)
Q Consensus       180 ~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i  214 (239)
                      +.++..+.+.+++   .+.|||++|||.+.+.. +|.+
T Consensus       156 ~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~-~~~~  192 (195)
T PRK13541        156 KENRDLLNNLIVMKANSGGIVLLSSHLESSIKS-AQIL  192 (195)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEeCCccccch-hhee
Confidence            9999988887753   35799999999998875 6654

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=1.2e-42  Score=332.08  Aligned_cols=209  Identities=22%  Similarity=0.380  Sum_probs=159.9

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCc---CCCceeEEecCce----------
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL---QPSSGTVFRSAKV----------   92 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~---~p~~G~i~~~~~~----------   92 (239)
                      ..+|+++|++++|+ +..+|+|+||+|.+|+++||+||||||||||||+|+|..   .|++|+|.+..+.          
T Consensus       175 ~~~I~i~nls~~y~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~  253 (718)
T PLN03073        175 IKDIHMENFSISVG-GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ  253 (718)
T ss_pred             ceeEEEceEEEEeC-CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence            45799999999995 456999999999999999999999999999999999964   4677776432110          


Q ss_pred             ---------------EEEEEeeccCCCC-CC------------CCcHH----HHHHH---hC-CCCcHHHHHHHHHhcCC
Q 026376           93 ---------------RIAVFSQHHVDGL-DL------------SSNPL----LYMMR---CF-PGVPEQKLRAHLGSFGV  136 (239)
Q Consensus        93 ---------------~~~~~~q~~~~~~-~~------------~~~~~----~~~~~---~~-~~~~~~~~~~~l~~~~l  136 (239)
                                     .+++++|.+.... ..            .....    ..+..   .. ....+.++.++|..+|+
T Consensus       254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl  333 (718)
T PLN03073        254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSF  333 (718)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCC
Confidence                           0111222110000 00            00000    00000   00 00123466778888888


Q ss_pred             CcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEE
Q 026376          137 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWV  216 (239)
Q Consensus       137 ~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~  216 (239)
                      .....++++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|++++.|||+||||++++..+||++++
T Consensus       334 ~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d~i~~  413 (718)
T PLN03073        334 TPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDILH  413 (718)
T ss_pred             ChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEE
Confidence            65556788999999999999999999999999999999999999999999999999989999999999999999999999


Q ss_pred             EeCCeEEeeCCChhHHHHH
Q 026376          217 VSEGKATPFHGTFHDYKKM  235 (239)
Q Consensus       217 l~~G~i~~~~g~~~~~~~~  235 (239)
                      |++|++..+.|++++|...
T Consensus       414 l~~g~i~~~~g~~~~~~~~  432 (718)
T PLN03073        414 LHGQKLVTYKGDYDTFERT  432 (718)
T ss_pred             EECCEEEEeCCCHHHHHHH
Confidence            9999998789999887653

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=100.00  E-value=6.2e-43  Score=327.31  Aligned_cols=196  Identities=23%  Similarity=0.284  Sum_probs=159.7

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV   96 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~   96 (239)
                      .++++|++|+|+++..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.           ..++|
T Consensus       322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~  401 (547)
T PRK10522        322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSA  401 (547)
T ss_pred             eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEE
Confidence            5999999999975556999999999999999999999999999999999999999999998764           35899


Q ss_pred             EeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc--C--CCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376           97 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL--Q--PMYTLSGGQKSRVAFAKITFKKPHIILLD  172 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~--~~~~LSgGqkqrv~laral~~~p~llllD  172 (239)
                      ++|++...   ..+...+    ....+.+++.++++.+++......  .  ...+||||||||++||||++++|++||||
T Consensus       402 v~q~~~lf---~~ti~~n----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililD  474 (547)
T PRK10522        402 VFTDFHLF---DQLLGPE----GKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLD  474 (547)
T ss_pred             EecChhHH---HHhhccc----cCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence            99986421   1111111    112345677888998888643211  1  13589999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhH
Q 026376          173 EPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD  231 (239)
Q Consensus       173 EPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~  231 (239)
                      |||++||+++...+.+.+.+    .+.|+|+|||+++.+. .||++++|++|++.+..|+..+
T Consensus       475 E~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~e~~~~~~~  536 (547)
T PRK10522        475 EWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFI-HADRLLEMRNGQLSELTGEERD  536 (547)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHH-hCCEEEEEECCEEEEecCCchh
Confidence            99999999999888777642    3679999999998765 7999999999999877666543

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=8.7e-43  Score=303.70  Aligned_cols=206  Identities=21%  Similarity=0.289  Sum_probs=174.9

Q ss_pred             CCCeEEEEeeEEEcCCC----------CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---
Q 026376           25 GPPIISFSDASFGYPGG----------PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---   91 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~~----------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---   91 (239)
                      .++.++.+++.+.|+-+          ..++++|||++.+|+.+||+|++|||||||=++|.++++++ |+|.+.+.   
T Consensus       273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~  351 (534)
T COG4172         273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDID  351 (534)
T ss_pred             CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccc
Confidence            45689999999999621          24789999999999999999999999999999999999887 99998763   


Q ss_pred             -----------eEEEEEeeccCCCCCCCCcHHHHHHH---hCC-C----CcHHHHHHHHHhcCCCcccccCCCCCCChHH
Q 026376           92 -----------VRIAVFSQHHVDGLDLSSNPLLYMMR---CFP-G----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQ  152 (239)
Q Consensus        92 -----------~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~-~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq  152 (239)
                                 .++..+||+|+..+++..++-.-+..   ... .    ...+++.++|+.+|++....+++++++||||
T Consensus       352 ~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQ  431 (534)
T COG4172         352 GLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQ  431 (534)
T ss_pred             ccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcch
Confidence                       35899999998888777765443321   111 1    2346788999999999888899999999999


Q ss_pred             HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCC
Q 026376          153 KSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGT  228 (239)
Q Consensus       153 kqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~  228 (239)
                      |||+|||||++.+|++++||||||+||..-+.++++.|++.    +-+-+|||||+..+..+||+|++|++|+|+ ..|+
T Consensus       432 RQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiV-E~G~  510 (534)
T COG4172         432 RQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIV-EQGP  510 (534)
T ss_pred             hhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEe-eeCC
Confidence            99999999999999999999999999998888888777653    458999999999999999999999999997 5676


Q ss_pred             hhHH
Q 026376          229 FHDY  232 (239)
Q Consensus       229 ~~~~  232 (239)
                      .+++
T Consensus       511 ~~~i  514 (534)
T COG4172         511 TEAV  514 (534)
T ss_pred             HHHH
Confidence            6543

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=100.00  E-value=8e-43  Score=281.56  Aligned_cols=154  Identities=25%  Similarity=0.292  Sum_probs=131.7

Q ss_pred             EeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcH
Q 026376           32 SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNP  111 (239)
Q Consensus        32 ~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~  111 (239)
                      .|++++|+ +..++++ +|+|++||+++|+||||||||||+|+|+|+++|++|+|.+++. .++|++|+..         
T Consensus         4 ~~l~~~~~-~~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~-~i~~~~q~~~---------   71 (177)
T cd03222           4 PDCVKRYG-VFFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI-TPVYKPQYID---------   71 (177)
T ss_pred             CCeEEEEC-CEEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE-EEEEEcccCC---------
Confidence            58999995 4678888 4999999999999999999999999999999999999998764 4777776431         


Q ss_pred             HHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHh
Q 026376          112 LLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV  191 (239)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~  191 (239)
                                                          ||||||||++|||||+.+|+++||||||++||+.++..+.+.+.
T Consensus        72 ------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~  115 (177)
T cd03222          72 ------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIR  115 (177)
T ss_pred             ------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence                                                99999999999999999999999999999999999988877775


Q ss_pred             hc---C-CEEEEEecCHHHHhhhcCeEEEEeCCeEE-eeCCChhHHH
Q 026376          192 LF---Q-GGILMVSHDEHLISGSVEELWVVSEGKAT-PFHGTFHDYK  233 (239)
Q Consensus       192 ~~---~-~tii~vsHd~~~~~~~~d~i~~l~~G~i~-~~~g~~~~~~  233 (239)
                      +.   + .|||++|||++++..+||++++|+++..+ ...|.+..++
T Consensus       116 ~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~  162 (177)
T cd03222         116 RLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTR  162 (177)
T ss_pred             HHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcchh
Confidence            43   3 69999999999999999999999887543 1125554443

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=2.4e-43  Score=274.03  Aligned_cols=201  Identities=18%  Similarity=0.257  Sum_probs=166.0

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------------
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------------   91 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------------   91 (239)
                      .|.++|+++.| |...+|-||+|+...||.+.++||+|+|||||+|.|.-+..|.+|+..+.+.                
T Consensus         2 sirv~~in~~y-g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~l   80 (242)
T COG4161           2 SIQLNGINCFY-GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL   80 (242)
T ss_pred             ceEEccccccc-ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHH
Confidence            47899999999 5567899999999999999999999999999999999999999999875432                


Q ss_pred             -eEEEEEeeccCCCCCCCCcHHHHHHHh-------CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 026376           92 -VRIAVFSQHHVDGLDLSSNPLLYMMRC-------FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF  163 (239)
Q Consensus        92 -~~~~~~~q~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~  163 (239)
                       ..+|++||+....  +..++..++...       .......++.++|+++.+.+ .+++.+-.|||||+|||+|||||+
T Consensus        81 r~~vgmvfqqy~lw--phltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~-~adr~plhlsggqqqrvaiaralm  157 (242)
T COG4161          81 RRNVGMVFQQYNLW--PHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKP-YADRYPLHLSGGQQQRVAIARALM  157 (242)
T ss_pred             HHhhhhhhhhhccC--chhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhcccc-ccccCceecccchhhhHHHHHHHh
Confidence             3589999986322  223444444321       11123456788999999974 678999999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          164 KKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      .+|++||+||||++|||+-..++.+.+++   .|.|-++|||..+++...+.+++.|++|+|+ ..|+.+.|.
T Consensus       158 mkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~iv-e~g~a~~ft  229 (242)
T COG4161         158 MEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIV-EQGDASCFT  229 (242)
T ss_pred             cCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeE-eecchhhcc
Confidence            99999999999999999977776666655   4668999999999999999999999999997 578776553

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=8.9e-43  Score=353.49  Aligned_cols=203  Identities=23%  Similarity=0.333  Sum_probs=171.9

Q ss_pred             eEEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC------------------------
Q 026376           28 IISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP------------------------   81 (239)
Q Consensus        28 ~l~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p------------------------   81 (239)
                      .|+++||+|+|+++  .++|+|+||+|++|+++||+||||||||||+++|+|+++|                        
T Consensus      1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265       1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred             eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence            59999999999742  4699999999999999999999999999999999999998                        


Q ss_pred             ------------------------------CceeEEecCc-----------eEEEEEeeccCCCCCCCCcHHHHHHHhCC
Q 026376           82 ------------------------------SSGTVFRSAK-----------VRIAVFSQHHVDGLDLSSNPLLYMMRCFP  120 (239)
Q Consensus        82 ------------------------------~~G~i~~~~~-----------~~~~~~~q~~~~~~~~~~~~~~~~~~~~~  120 (239)
                                                    ++|+|.+++.           ..++|++|++..   +..+..+++....+
T Consensus      1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~L---F~gTIreNI~~g~~ 1321 (1466)
T PTZ00265       1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPML---FNMSIYENIKFGKE 1321 (1466)
T ss_pred             ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcc---ccccHHHHHhcCCC
Confidence                                          6999998874           369999999753   34567777654434


Q ss_pred             CCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 026376          121 GVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL  190 (239)
Q Consensus       121 ~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l  190 (239)
                      ..+.++++++++..++.+...          ......||||||||++|||||+++|+|||||||||+||.++.+.+.+.|
T Consensus      1322 ~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L 1401 (1466)
T PTZ00265       1322 DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI 1401 (1466)
T ss_pred             CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence            566788899988887754322          1234679999999999999999999999999999999999999998888


Q ss_pred             hhc----CCEEEEEecCHHHHhhhcCeEEEEeC----CeEEeeCCChhHHHH
Q 026376          191 VLF----QGGILMVSHDEHLISGSVEELWVVSE----GKATPFHGTFHDYKK  234 (239)
Q Consensus       191 ~~~----~~tii~vsHd~~~~~~~~d~i~~l~~----G~i~~~~g~~~~~~~  234 (239)
                      .+.    +.|+|+|||+++.+. .||+|++|++    |+++...|+++++.+
T Consensus      1402 ~~~~~~~~~TvIiIaHRlsti~-~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265       1402 VDIKDKADKTIITIAHRIASIK-RSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred             HHHhccCCCEEEEEechHHHHH-hCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence            764    569999999999987 5999999999    896546899998864

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=5.2e-44  Score=278.94  Aligned_cols=191  Identities=21%  Similarity=0.340  Sum_probs=160.1

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV   96 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~   96 (239)
                      .++++++.+.- ++.++|+|+||++.+||+++|+||+|||||||+|+++-++.|++|++++.|.           ..++|
T Consensus         3 lle~kq~~y~a-~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY   81 (223)
T COG4619           3 LLELKQVGYLA-GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSY   81 (223)
T ss_pred             chHHHHHHhhc-CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHH
Confidence            35666666555 3457999999999999999999999999999999999999999999999874           35889


Q ss_pred             EeeccCCCCCCCCcHHHHH----HHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376           97 FSQHHVDGLDLSSNPLLYM----MRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD  172 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD  172 (239)
                      +.|.+...   ..++.+++    .......++..+.+.|+++++.+...++++.+||||||||++|+|-|..-|+|||||
T Consensus        82 ~~Q~paLf---g~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLD  158 (223)
T COG4619          82 CAQTPALF---GDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLD  158 (223)
T ss_pred             HHcCcccc---ccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEec
Confidence            99887421   12333322    122234567788899999999988889999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeE
Q 026376          173 EPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKA  222 (239)
Q Consensus       173 EPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i  222 (239)
                      ||||+||+.+.+.+.+.+.++    +.+++.||||.+...+.+|++|.+..|++
T Consensus       159 E~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~  212 (223)
T COG4619         159 EITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA  212 (223)
T ss_pred             CchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence            999999999988877766543    56899999999998899999999999876

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=100.00  E-value=2e-42  Score=287.66  Aligned_cols=186  Identities=15%  Similarity=0.178  Sum_probs=142.9

Q ss_pred             eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEE-ecCceEEEEEeeccCCCCCCCCcHHHHHH--HhCC
Q 026376           44 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF-RSAKVRIAVFSQHHVDGLDLSSNPLLYMM--RCFP  120 (239)
Q Consensus        44 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~-~~~~~~~~~~~q~~~~~~~~~~~~~~~~~--~~~~  120 (239)
                      +|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|. +++...  .+.+.+.  +....+..+++.  ....
T Consensus         2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~--~~~~~~~--l~~~ltv~enl~~~~~~~   77 (213)
T PRK15177          2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL--PLGANSF--ILPGLTGEENARMMASLY   77 (213)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee--ccccccc--cCCcCcHHHHHHHHHHHc
Confidence            68999999999999999999999999999999999999999996 554321  1222221  111223333332  1111


Q ss_pred             CCcHHHH-HHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh--cCCEE
Q 026376          121 GVPEQKL-RAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL--FQGGI  197 (239)
Q Consensus       121 ~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~--~~~ti  197 (239)
                      .....++ ..+.+.+++.. ..++++.+||+|||||++|||||+.+|+++||||||+++|+.++..+.+.+.+  .+.++
T Consensus        78 ~~~~~~~~~~~~~~~~l~~-~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~i  156 (213)
T PRK15177         78 GLDGDEFSHFCYQLTQLEQ-CYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGL  156 (213)
T ss_pred             CCCHHHHHHHHHHHhChhH-HhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcE
Confidence            2223332 33345567754 45788999999999999999999999999999999999999998888876643  24589


Q ss_pred             EEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376          198 LMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  235 (239)
Q Consensus       198 i~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  235 (239)
                      |++||+++++..+||++++|++|+++ +.++.++.++.
T Consensus       157 i~vsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~~  193 (213)
T PRK15177        157 IVLTHNPRLIKEHCHAFGVLLHGKIT-MCEDLAQATAL  193 (213)
T ss_pred             EEEECCHHHHHHhcCeeEEEECCeEE-EeCCHHHHHHH
Confidence            99999999999999999999999997 77888877554

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=100.00  E-value=1.5e-42  Score=308.94  Aligned_cols=193  Identities=21%  Similarity=0.343  Sum_probs=165.8

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEE
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI   94 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~   94 (239)
                      +.+++++++|.|+ +..++++|||+|++||+.||+|+||||||||+++|+|+++|++|+|+++++            ..|
T Consensus         3 ~~l~~~~itK~f~-~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GI   81 (501)
T COG3845           3 PALEMRGITKRFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI   81 (501)
T ss_pred             ceEEEeccEEEcC-CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCC
Confidence            4689999999996 678999999999999999999999999999999999999999999999885            359


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHhCC---------CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRCFP---------GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK  165 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~  165 (239)
                      |+++|++....  +.++.+++.....         ....+++.++.+++|+.- ..+.++.+||-||||||.|.+||.++
T Consensus        82 GMVhQHF~Lv~--~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~v-dp~~~V~dLsVG~qQRVEIlKaLyr~  158 (501)
T COG3845          82 GMVHQHFMLVP--TLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPV-DPDAKVADLSVGEQQRVEILKALYRG  158 (501)
T ss_pred             cEEeecccccc--ccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCC-CccceeecCCcchhHHHHHHHHHhcC
Confidence            99999975332  2344444432211         123567888999999974 35788999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376          166 PHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       166 p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~  223 (239)
                      |++|||||||+-|-|...+.+++.+++   .|+|||+|||-++++.++|||+-+|+.|+++
T Consensus       159 a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvv  219 (501)
T COG3845         159 ARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV  219 (501)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEE
Confidence            999999999999999999988776654   5789999999999999999999999999975

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=100.00  E-value=2.1e-42  Score=322.52  Aligned_cols=186  Identities=28%  Similarity=0.465  Sum_probs=157.1

Q ss_pred             eEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEE
Q 026376           28 IISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA   95 (239)
Q Consensus        28 ~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~   95 (239)
                      .++++||+|+|+++ +++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++.           ..++
T Consensus       320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~  399 (529)
T TIGR02857       320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIA  399 (529)
T ss_pred             eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheE
Confidence            59999999999754 36899999999999999999999999999999999999999999998864           2599


Q ss_pred             EEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhccC
Q 026376           96 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKK  165 (239)
Q Consensus        96 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~~~  165 (239)
                      |++|++..   +..+..+++....+..+++++.++++..++.+...          .....+||||||||++|||||+++
T Consensus       400 ~v~Q~~~l---f~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~  476 (529)
T TIGR02857       400 WVPQHPFL---FAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRD  476 (529)
T ss_pred             EEcCCCcc---cCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcC
Confidence            99999742   23566666643333446678888888888754322          123568999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEE
Q 026376          166 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVV  217 (239)
Q Consensus       166 p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l  217 (239)
                      |+++||||||++||+.+.+.+.+.+.+.  +.|+|+|||+++.+. .||+|++|
T Consensus       477 ~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~~l  529 (529)
T TIGR02857       477 APLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAE-RADRIVVL  529 (529)
T ss_pred             CCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH-hCCEEEeC
Confidence            9999999999999999999999988764  569999999999886 69999875

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=100.00  E-value=1.3e-42  Score=323.92  Aligned_cols=174  Identities=31%  Similarity=0.527  Sum_probs=148.6

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVF   97 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~~~   97 (239)
                      .++++||+|+|++++.+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+++.          ..++|+
T Consensus       334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V  413 (529)
T TIGR02868       334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVF  413 (529)
T ss_pred             eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEE
Confidence            5999999999976556999999999999999999999999999999999999999999999873          369999


Q ss_pred             eeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHhccCCC
Q 026376           98 SQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFKKPH  167 (239)
Q Consensus        98 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqrv~laral~~~p~  167 (239)
                      +|++..   +..+..+++....+..+++++.++++..++.+....          .....||||||||++|||||+++|+
T Consensus       414 ~Q~~~l---F~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~  490 (529)
T TIGR02868       414 AQDAHL---FDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAP  490 (529)
T ss_pred             ccCccc---ccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCC
Confidence            999752   345666776543345577889999999888643221          1235799999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCH
Q 026376          168 IILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDE  204 (239)
Q Consensus       168 llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~  204 (239)
                      +||||||||+||+++...+.+.+.+.  +.|+|+|||++
T Consensus       491 iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl  529 (529)
T TIGR02868       491 ILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL  529 (529)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence            99999999999999999999988765  56999999984

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=100.00  E-value=3.5e-42  Score=327.80  Aligned_cols=188  Identities=23%  Similarity=0.339  Sum_probs=159.6

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCC
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD  106 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~  106 (239)
                      .+++++|+++.|++++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|..+.+..++|++|++...  
T Consensus       450 ~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~--  527 (659)
T TIGR00954       450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMT--  527 (659)
T ss_pred             CeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCC--
Confidence            469999999999655579999999999999999999999999999999999999999999988777899999997422  


Q ss_pred             CCCcHHHHHHHhC-------CCCcHHHHHHHHHhcCCCcccccCC---------CCCCChHHHHHHHHHHHhccCCCEEE
Q 026376          107 LSSNPLLYMMRCF-------PGVPEQKLRAHLGSFGVTGNLALQP---------MYTLSGGQKSRVAFAKITFKKPHIIL  170 (239)
Q Consensus       107 ~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~---------~~~LSgGqkqrv~laral~~~p~lll  170 (239)
                       ..+..+++....       .....+++.++++.+++.+. .+++         ..+||||||||++|||||+++|+++|
T Consensus       528 -~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~-~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~ill  605 (659)
T TIGR00954       528 -LGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHI-LEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAI  605 (659)
T ss_pred             -CcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHH-HhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEE
Confidence             124545443211       12345678889999998643 3333         37899999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeC
Q 026376          171 LDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSE  219 (239)
Q Consensus       171 lDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~  219 (239)
                      |||||++||+.+...+.+.+++.+.|+|+|||+++.+. .||++++|+.
T Consensus       606 LDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~-~~d~il~l~~  653 (659)
T TIGR00954       606 LDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWK-YHEYLLYMDG  653 (659)
T ss_pred             EeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHH-hCCEEEEEeC
Confidence            99999999999999999999888889999999999874 7999999963

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=4.8e-42  Score=350.07  Aligned_cols=203  Identities=18%  Similarity=0.292  Sum_probs=171.1

Q ss_pred             CeEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376           27 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI   94 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~   94 (239)
                      ..|+++||+++|+++ +++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+++.           .++
T Consensus      1233 g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i 1312 (1495)
T PLN03232       1233 GSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVL 1312 (1495)
T ss_pred             CcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhc
Confidence            359999999999543 56999999999999999999999999999999999999999999999873           369


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhcc
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFK  164 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~~  164 (239)
                      ++++|++..   +..+..+++.. ....+++++.++++..++.+...          .....+||||||||++|||||++
T Consensus      1313 ~iVpQdp~L---F~gTIr~NL~~-~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr 1388 (1495)
T PLN03232       1313 SIIPQSPVL---FSGTVRFNIDP-FSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLR 1388 (1495)
T ss_pred             EEECCCCee---eCccHHHHcCC-CCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHh
Confidence            999999753   23455555532 22456778888888887754322          12346899999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  235 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  235 (239)
                      +|+|||||||||+||.++...+.+.+++.  ++|+|+|+|+++.+.. ||+|++|++|+++ ..|+++++.+.
T Consensus      1389 ~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVL~~G~iv-E~Gt~~eLl~~ 1459 (1495)
T PLN03232       1389 RSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVL-EYDSPQELLSR 1459 (1495)
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEE-EECCHHHHHhC
Confidence            99999999999999999999998888764  5799999999999986 9999999999998 57999887643

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=100.00  E-value=3e-43  Score=315.42  Aligned_cols=213  Identities=47%  Similarity=0.880  Sum_probs=196.1

Q ss_pred             CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCC
Q 026376           25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG  104 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~  104 (239)
                      ++|.+.+.|++|.|+++..++++++|-|..++++++|||||+|||||||+++|.+.|..|.|.......++++.|+....
T Consensus       386 p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~  465 (614)
T KOG0927|consen  386 PPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQ  465 (614)
T ss_pred             CCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhh
Confidence            46789999999999776679999999999999999999999999999999999999999999887777888888887666


Q ss_pred             CCCCCcHHHHHHHhCCC-CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHH
Q 026376          105 LDLSSNPLLYMMRCFPG-VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV  183 (239)
Q Consensus       105 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~  183 (239)
                      +++......+++..++. ...+.++.+|.++|+.++....++++||+|||.||.+|++++.+|.+|+|||||||||.+++
T Consensus       466 ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~ti  545 (614)
T KOG0927|consen  466 LDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETI  545 (614)
T ss_pred             cCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhH
Confidence            67777778888777664 56778999999999998888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHHhh
Q 026376          184 EALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQ  237 (239)
Q Consensus       184 ~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~  237 (239)
                      ..+.+.|.++.++||+||||+.++.++++++|+..+|.+..++|.+..|.+.+.
T Consensus       546 d~laeaiNe~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk~~l~  599 (614)
T KOG0927|consen  546 DALAEAINEFPGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYKEHLK  599 (614)
T ss_pred             HHHHHHHhccCCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999987654

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=7.5e-42  Score=349.46  Aligned_cols=202  Identities=18%  Similarity=0.282  Sum_probs=171.0

Q ss_pred             CeEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376           27 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI   94 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~   94 (239)
                      ..|+++||+++|+++ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+++.           .++
T Consensus      1236 g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~I 1315 (1622)
T PLN03130       1236 GSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVL 1315 (1622)
T ss_pred             CcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhcc
Confidence            369999999999644 46999999999999999999999999999999999999999999999873           469


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHhcc
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFK  164 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqrv~laral~~  164 (239)
                      +++||++..   +..+..+++... ...+++++.++++..++.+....          .....||||||||++|||||++
T Consensus      1316 siVpQdp~L---F~GTIreNLd~~-~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr 1391 (1622)
T PLN03130       1316 GIIPQAPVL---FSGTVRFNLDPF-NEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLR 1391 (1622)
T ss_pred             EEECCCCcc---ccccHHHHhCcC-CCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHc
Confidence            999999853   334666665322 23467788899988877543221          2345899999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      +|+|||||||||+||.++...+.+.+++.  ++|||+|+|+++.+.. ||+|++|++|+++ ..|+++++.+
T Consensus      1392 ~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~DrIlVLd~G~Iv-E~Gt~~eLl~ 1461 (1622)
T PLN03130       1392 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILVLDAGRVV-EFDTPENLLS 1461 (1622)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-CCEEEEEECCEEE-EeCCHHHHHh
Confidence            99999999999999999999999888764  5799999999999985 9999999999997 5799988764

>PLN03211 ABC transporter G-25; Provisional

Probab=100.00  E-value=5.8e-42  Score=325.50  Aligned_cols=202  Identities=23%  Similarity=0.326  Sum_probs=160.8

Q ss_pred             EeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCC--ceeEEecCc-------eEEEEEeeccC
Q 026376           32 SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS--SGTVFRSAK-------VRIAVFSQHHV  102 (239)
Q Consensus        32 ~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~--~G~i~~~~~-------~~~~~~~q~~~  102 (239)
                      +|++++|+ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+|+  +|+|.+++.       ..++|++|+..
T Consensus        72 ~~l~~~~~-~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~  150 (659)
T PLN03211         72 SDETRQIQ-ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDI  150 (659)
T ss_pred             ccccccCC-CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccc
Confidence            44555663 456999999999999999999999999999999999999985  899998874       25899999864


Q ss_pred             CCCCCCCcHHHHHH--HhC--C-CCc----HHHHHHHHHhcCCCccc----ccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 026376          103 DGLDLSSNPLLYMM--RCF--P-GVP----EQKLRAHLGSFGVTGNL----ALQPMYTLSGGQKSRVAFAKITFKKPHII  169 (239)
Q Consensus       103 ~~~~~~~~~~~~~~--~~~--~-~~~----~~~~~~~l~~~~l~~~~----~~~~~~~LSgGqkqrv~laral~~~p~ll  169 (239)
                      ...  ..++.+.+.  ...  + ...    .+++.++++.+|+.+..    .++.++.||||||||++||++|+.+|+||
T Consensus       151 l~~--~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iL  228 (659)
T PLN03211        151 LYP--HLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL  228 (659)
T ss_pred             cCC--cCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEE
Confidence            322  223333321  111  1 111    23467889999996422    13457889999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHH-HHhhhcCeEEEEeCCeEEeeCCChhHHHHHhh
Q 026376          170 LLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEH-LISGSVEELWVVSEGKATPFHGTFHDYKKMLQ  237 (239)
Q Consensus       170 llDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~-~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~  237 (239)
                      +|||||+|||..++..+.+.+++   .+.|||++||+++ .+.++||++++|++|+++ +.|+.++..+.+.
T Consensus       229 lLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv-~~G~~~~~~~~f~  299 (659)
T PLN03211        229 ILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCL-FFGKGSDAMAYFE  299 (659)
T ss_pred             EEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEE-EECCHHHHHHHHH
Confidence            99999999999999988887765   3679999999998 578899999999999997 7899988876654

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.6e-42  Score=276.56  Aligned_cols=203  Identities=23%  Similarity=0.354  Sum_probs=171.1

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------eE
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VR   93 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~   93 (239)
                      ++|+++|++++| ++..+++++||++.+||.-+|||||||||||++.+|+|..+|+.|++++.+.             ..
T Consensus         4 ~iL~~~~vsVsF-~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~G   82 (249)
T COG4674           4 IILYLDGVSVSF-GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG   82 (249)
T ss_pred             ceEEEeceEEEE-cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhc
Confidence            579999999999 5678999999999999999999999999999999999999999999998872             35


Q ss_pred             EEEEeeccCCCCCCCCcHHHHHH--------------HhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHH
Q 026376           94 IAVFSQHHVDGLDLSSNPLLYMM--------------RCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFA  159 (239)
Q Consensus        94 ~~~~~q~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la  159 (239)
                      ||.-||.|.-+..+  ++.+++.              .......+.++.++|...|+.+ ..++....||.||||++.|+
T Consensus        83 IGRKFQ~PtVfe~l--tV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~-~~~~~A~~LSHGqKQwLEIG  159 (249)
T COG4674          83 IGRKFQKPTVFENL--TVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGD-ERDRLAALLSHGQKQWLEIG  159 (249)
T ss_pred             cCccccCCeehhhc--cHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccch-hhhhhhhhhccchhhhhhhh
Confidence            78888887432222  2222221              1112234568999999999975 56788999999999999999


Q ss_pred             HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          160 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       160 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      +.++++|++||||||++|+-.+.....-+.+++.  +.+|++|.||+.|+..+|++|-+|+.|.+. ..|+.+++.+
T Consensus       160 Mll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL-~EGsld~v~~  235 (249)
T COG4674         160 MLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVL-AEGSLDEVQN  235 (249)
T ss_pred             eeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEecccee-ecccHHHhhc
Confidence            9999999999999999999998877777777665  458999999999999999999999999997 6899988753

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=100.00  E-value=5.4e-42  Score=321.38  Aligned_cols=190  Identities=18%  Similarity=0.210  Sum_probs=155.1

Q ss_pred             eEEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------e
Q 026376           28 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------V   92 (239)
Q Consensus        28 ~l~~~~l~~~y~~~----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~   92 (239)
                      .++++||+|+|++.    ..+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+++.           .
T Consensus       337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~  416 (555)
T TIGR01194       337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRD  416 (555)
T ss_pred             eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHh
Confidence            59999999999642    25899999999999999999999999999999999999999999998763           3


Q ss_pred             EEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccC-----CCCCCChHHHHHHHHHHHhccCCC
Q 026376           93 RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ-----PMYTLSGGQKSRVAFAKITFKKPH  167 (239)
Q Consensus        93 ~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGqkqrv~laral~~~p~  167 (239)
                      .++|++|++...   ..+...+.   .+...++++.++++.+++.+.....     ....||||||||++||||++.+|+
T Consensus       417 ~i~~v~q~~~lf---~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~  490 (555)
T TIGR01194       417 LFSAIFADFHLF---DDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRP  490 (555)
T ss_pred             hCcEEccChhhh---hhhhhccc---ccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            589999986421   11111111   1234566788899999987543221     235799999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEe
Q 026376          168 IILLDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSEGKATP  224 (239)
Q Consensus       168 llllDEPt~~LD~~~~~~l~~~l~----~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~  224 (239)
                      +|||||||++||+++...+.+.+.    ..+.|+|+|||+++.+. .||+|++|++|+++.
T Consensus       491 ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~-~~d~i~~l~~G~i~~  550 (555)
T TIGR01194       491 ILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFE-LADQIIKLAAGCIVK  550 (555)
T ss_pred             EEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEE
Confidence            999999999999999988876542    34679999999998775 799999999999863

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.7e-42  Score=288.41  Aligned_cols=195  Identities=24%  Similarity=0.312  Sum_probs=156.6

Q ss_pred             eeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------------eEEEEE
Q 026376           33 DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------VRIAVF   97 (239)
Q Consensus        33 ~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~~~~~~   97 (239)
                      |+.+++ | ...| +++|+.+.-.++||.|+||||||||+|+|+|+.+|++|.|..+++               .++||+
T Consensus         5 ~~~~~l-G-~~~l-~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYV   81 (352)
T COG4148           5 NFRQRL-G-NFAL-DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYV   81 (352)
T ss_pred             ehhhhc-C-ceEE-EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeE
Confidence            344445 2 2343 689999876899999999999999999999999999999988764               479999


Q ss_pred             eeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 026376           98 SQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH  177 (239)
Q Consensus        98 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~  177 (239)
                      ||+...+...  ++..++...........+.++.+.+|+. .+.++.+.+|||||||||||+|||+..|++||||||.++
T Consensus        82 FQDARLFpH~--tVrgNL~YG~~~~~~~~fd~iv~lLGI~-hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaS  158 (352)
T COG4148          82 FQDARLFPHY--TVRGNLRYGMWKSMRAQFDQLVALLGIE-HLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLAS  158 (352)
T ss_pred             eeccccccce--EEecchhhhhcccchHhHHHHHHHhCcH-HHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhh
Confidence            9986432222  2222221111123456788899999997 467899999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          178 LDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       178 LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      ||...+.+++-.+.+.    +..|++|||.++++.++||++++|++|++. ..|+.+++..
T Consensus       159 LD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~-A~g~~e~v~~  218 (352)
T COG4148         159 LDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVK-ASGPLEEVWG  218 (352)
T ss_pred             cccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEE-ecCcHHHHhc
Confidence            9999888887666443    457999999999999999999999999997 5688877653

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6.3e-42  Score=305.44  Aligned_cols=232  Identities=47%  Similarity=0.787  Sum_probs=210.7

Q ss_pred             ccccCCCCcccccCCCCCCCCCeEEEEeeEEEcCCCC-ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCce
Q 026376            6 EVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGP-ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG   84 (239)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~-~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G   84 (239)
                      .+..++.+.+.||.+-.....|.+++.+|+|.|+.+. +++.++++.++.-+.++++|+||+||||++|++.|-..|..|
T Consensus       340 ~~~~~~~~~~~fP~~~e~~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rg  419 (582)
T KOG0062|consen  340 STLIEVLIGFLFPTEGEVLSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRG  419 (582)
T ss_pred             ccceecccceecCCCCCcCCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccc
Confidence            3444445566666643444567899999999997665 689999999999999999999999999999999999999999


Q ss_pred             eEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 026376           85 TVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK  164 (239)
Q Consensus        85 ~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~  164 (239)
                      .+...++.+++|.+|...+.++...+.++.++..+++..+++++..+..||++.+++.+++.+||||||-||++|.+...
T Consensus       420 i~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~  499 (582)
T KOG0062|consen  420 IVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWN  499 (582)
T ss_pred             eeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcC
Confidence            99999999999999998877777777888888888888999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHHhh
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQ  237 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~  237 (239)
                      +|.+|+||||||+||.++...+.+.|+.+++.||+||||.+|+..+|+.+|+.++|++..+.|..++|.+.+.
T Consensus       500 ~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~~~yKkl~~  572 (582)
T KOG0062|consen  500 NPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGIDKYKKLLG  572 (582)
T ss_pred             CCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999987654

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=2e-41  Score=346.01  Aligned_cols=202  Identities=18%  Similarity=0.274  Sum_probs=170.6

Q ss_pred             CeEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376           27 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI   94 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~   94 (239)
                      ..|+++||+++|+++ ..+|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+++.           .++
T Consensus      1283 g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i 1362 (1522)
T TIGR00957      1283 GRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKI 1362 (1522)
T ss_pred             CcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcC
Confidence            469999999999643 46999999999999999999999999999999999999999999999873           469


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc------c----CCCCCCChHHHHHHHHHHHhcc
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA------L----QPMYTLSGGQKSRVAFAKITFK  164 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~----~~~~~LSgGqkqrv~laral~~  164 (239)
                      +++||++..   +..+...++.. +...+++++.++++.+++.+...      +    .....||||||||++|||||++
T Consensus      1363 ~iVpQdp~L---F~gTIr~NLdp-~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr 1438 (1522)
T TIGR00957      1363 TIIPQDPVL---FSGSLRMNLDP-FSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLR 1438 (1522)
T ss_pred             eEECCCCcc---cCccHHHHcCc-ccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHc
Confidence            999999753   23455555531 22456778889999887753221      1    2346799999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      +|+|||||||||+||.++...+.+.+++.  ++|||+|+|+++.+.. ||+|++|++|+++ ..|+++++.+
T Consensus      1439 ~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~-~DrIlVld~G~Iv-E~G~~~eLl~ 1508 (1522)
T TIGR00957      1439 KTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMD-YTRVIVLDKGEVA-EFGAPSNLLQ 1508 (1522)
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEE-EECCHHHHHh
Confidence            99999999999999999999998888764  5699999999999985 8999999999998 5799988764

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=100.00  E-value=8.4e-42  Score=290.99  Aligned_cols=185  Identities=23%  Similarity=0.267  Sum_probs=145.0

Q ss_pred             EeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEE-----------ecCc---------
Q 026376           32 SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF-----------RSAK---------   91 (239)
Q Consensus        32 ~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~-----------~~~~---------   91 (239)
                      .|++++|+++..+++|+|+ +.+|++++|+||||||||||+++|+|+++|++|+|.           +++.         
T Consensus         4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~   82 (255)
T cd03236           4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL   82 (255)
T ss_pred             cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence            4789999644458999995 999999999999999999999999999999999995           3331         


Q ss_pred             ----eEEEEEeeccCCCCCCCCcHHHHHHHhC-CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 026376           92 ----VRIAVFSQHHVDGLDLSSNPLLYMMRCF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP  166 (239)
Q Consensus        92 ----~~~~~~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p  166 (239)
                          ..++|++|..... .  ......+.... .......+.++++.+++.+ ..++++.+||||||||++|||||+.+|
T Consensus        83 ~~~~~~i~~~~~~~~~~-~--~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~laral~~~p  158 (255)
T cd03236          83 LEGDVKVIVKPQYVDLI-P--KAVKGKVGELLKKKDERGKLDELVDQLELRH-VLDRNIDQLSGGELQRVAIAAALARDA  158 (255)
T ss_pred             hhcccceeeecchhccC-c--hHHHHHHHHHhchhHHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence                1256777764211 1  11111111111 1123456788999999974 457788999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeE
Q 026376          167 HIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKA  222 (239)
Q Consensus       167 ~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i  222 (239)
                      +++||||||++||+.++..+.+.+++   .+.|||++|||++++..+||++++|+ |++
T Consensus       159 ~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~  216 (255)
T cd03236         159 DFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEP  216 (255)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCC
Confidence            99999999999999998877766654   35799999999999999999999995 444

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=4.1e-41  Score=343.48  Aligned_cols=201  Identities=19%  Similarity=0.314  Sum_probs=170.8

Q ss_pred             eEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEE
Q 026376           28 IISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA   95 (239)
Q Consensus        28 ~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~   95 (239)
                      .|+++||+++|+++ ..+|+||||+|++||++||+|++|||||||+++|.|+++|++|+|.+++.           ..++
T Consensus      1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~ 1387 (1560)
T PTZ00243       1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFS 1387 (1560)
T ss_pred             eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcce
Confidence            59999999999654 35999999999999999999999999999999999999999999998874           3699


Q ss_pred             EEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHhccC
Q 026376           96 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFKK  165 (239)
Q Consensus        96 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqrv~laral~~~  165 (239)
                      ++||++..   +..+...++.. ....+.+++.++++.+++.+....          ....+||||||||++|||||+++
T Consensus      1388 iVpQdp~L---F~gTIreNIdp-~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~ 1463 (1560)
T PTZ00243       1388 MIPQDPVL---FDGTVRQNVDP-FLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKK 1463 (1560)
T ss_pred             EECCCCcc---ccccHHHHhCc-ccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcC
Confidence            99999853   33466666532 224567889999999988643221          22367999999999999999995


Q ss_pred             -CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          166 -PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       166 -p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                       |+|||||||||+||.++...+.+.|.+.  +.|||+|+|+++.+. .||+|++|++|+++ ..|+++++.+
T Consensus      1464 ~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~-~~DrIlVLd~G~Vv-E~Gt~~eLl~ 1533 (1560)
T PTZ00243       1464 GSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVA-QYDKIIVMDHGAVA-EMGSPRELVM 1533 (1560)
T ss_pred             CCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence             9999999999999999999998888764  569999999999987 49999999999997 5799988864

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=1.9e-41  Score=273.27  Aligned_cols=149  Identities=24%  Similarity=0.329  Sum_probs=125.3

Q ss_pred             CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce------EEEEEeeccCCCCCCCCcHHHHH
Q 026376           42 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------RIAVFSQHHVDGLDLSSNPLLYM  115 (239)
Q Consensus        42 ~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------~~~~~~q~~~~~~~~~~~~~~~~  115 (239)
                      +.+|+|+||+|++|++++|+||||||||||||+|.    +++|++.+.+..      .++|++|                
T Consensus         8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~~~~~~~~~~q----------------   67 (176)
T cd03238           8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKFSRNKLIFIDQ----------------   67 (176)
T ss_pred             eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccccccccEEEEhH----------------
Confidence            46899999999999999999999999999999985    368998765431      1222221                


Q ss_pred             HHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHHHhh-
Q 026376          116 MRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK--PHIILLDEPSNHLDLDAVEALIQGLVL-  192 (239)
Q Consensus       116 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~--p~llllDEPt~~LD~~~~~~l~~~l~~-  192 (239)
                                  .++++.+++.....++++.+||||||||++|||||+.+  |+++||||||++||+.++..+.+.+++ 
T Consensus        68 ------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~  135 (176)
T cd03238          68 ------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGL  135 (176)
T ss_pred             ------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence                        46788889864335778899999999999999999999  999999999999999999988887765 


Q ss_pred             --cCCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376          193 --FQGGILMVSHDEHLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       193 --~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~  223 (239)
                        .+.|||++||+++++. .||++++|++|+..
T Consensus       136 ~~~g~tvIivSH~~~~~~-~~d~i~~l~~g~~~  167 (176)
T cd03238         136 IDLGNTVILIEHNLDVLS-SADWIIDFGPGSGK  167 (176)
T ss_pred             HhCCCEEEEEeCCHHHHH-hCCEEEEECCCCCC
Confidence              4679999999999975 79999999887653

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=3.8e-41  Score=341.69  Aligned_cols=189  Identities=25%  Similarity=0.365  Sum_probs=154.6

Q ss_pred             eEEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEec-Cc-----------eE
Q 026376           28 IISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS-AK-----------VR   93 (239)
Q Consensus        28 ~l~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~-~~-----------~~   93 (239)
                      .|+++||+|+|+++  .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++ +.           ..
T Consensus       382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~  461 (1466)
T PTZ00265        382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSK  461 (1466)
T ss_pred             cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHh
Confidence            59999999999743  369999999999999999999999999999999999999999999984 31           25


Q ss_pred             EEEEeeccCCCCCCCCcHHHHHHHhC------------------------------------------------------
Q 026376           94 IAVFSQHHVDGLDLSSNPLLYMMRCF------------------------------------------------------  119 (239)
Q Consensus        94 ~~~~~q~~~~~~~~~~~~~~~~~~~~------------------------------------------------------  119 (239)
                      ++|++|++...   ..+..+++....                                                      
T Consensus       462 Ig~V~Q~~~LF---~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  538 (1466)
T PTZ00265        462 IGVVSQDPLLF---SNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMR  538 (1466)
T ss_pred             ccEecccccch---hccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcc
Confidence            89999987422   224444432210                                                      


Q ss_pred             ---CCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH
Q 026376          120 ---PGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL  186 (239)
Q Consensus       120 ---~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l  186 (239)
                         .....+++.++++.+++.+..          ....+.+||||||||++|||||+.+|+||||||||++||+.+...+
T Consensus       539 ~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i  618 (1466)
T PTZ00265        539 KNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLV  618 (1466)
T ss_pred             cccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHH
Confidence               012345677888888775432          2345789999999999999999999999999999999999999998


Q ss_pred             HHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCC
Q 026376          187 IQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEG  220 (239)
Q Consensus       187 ~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G  220 (239)
                      .+.|.+.    +.|+|+|||+++.+. .||+|++|++|
T Consensus       619 ~~~L~~~~~~~g~TvIiIsHrls~i~-~aD~Iivl~~g  655 (1466)
T PTZ00265        619 QKTINNLKGNENRITIIIAHRLSTIR-YANTIFVLSNR  655 (1466)
T ss_pred             HHHHHHHhhcCCCEEEEEeCCHHHHH-hCCEEEEEeCC
Confidence            8888764    569999999999985 79999999986

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=6.5e-42  Score=285.28  Aligned_cols=192  Identities=26%  Similarity=0.377  Sum_probs=151.0

Q ss_pred             ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce----------EEEEEe-eccCCCCCCCCcH
Q 026376           43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV----------RIAVFS-QHHVDGLDLSSNP  111 (239)
Q Consensus        43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~----------~~~~~~-q~~~~~~~~~~~~  111 (239)
                      .+++||||+|++|++++++|||||||||+||+|+|++.|++|.|.+++..          ++++++ |.....++.....
T Consensus        38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~d  117 (325)
T COG4586          38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALD  117 (325)
T ss_pred             hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhh
Confidence            47899999999999999999999999999999999999999999987631          233332 1110011111100


Q ss_pred             HHHHHHhCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHH
Q 026376          112 LLYMMRCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALI  187 (239)
Q Consensus       112 ~~~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~  187 (239)
                      -..+.......    -.++...+.+.+++.+. .+.|++.||-|||.|+.||.+|+++|+||+|||||-|||...+..+.
T Consensus       118 s~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~-lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir  196 (325)
T COG4586         118 SLEVLKLIYEIPDDEFAERLDFLTEILDLEGF-LKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIR  196 (325)
T ss_pred             hHHHHHHHHhCCHHHHHHHHHHHHHHhcchhh-hhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHH
Confidence            00111111122    23556667778888754 57899999999999999999999999999999999999999999998


Q ss_pred             HHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHHh
Q 026376          188 QGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKML  236 (239)
Q Consensus       188 ~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~  236 (239)
                      +.++++    +.||+++||+++.+.++||||++|+.|+++ |+|+.+++.++.
T Consensus       197 ~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv-~dg~l~~l~~~f  248 (325)
T COG4586         197 EFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLV-FDGTLAQLQEQF  248 (325)
T ss_pred             HHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEe-ecccHHHHHHHh
Confidence            888765    469999999999999999999999999997 899999887764

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=100.00  E-value=1.2e-40  Score=316.80  Aligned_cols=201  Identities=22%  Similarity=0.330  Sum_probs=164.1

Q ss_pred             CeEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------
Q 026376           27 PIISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------   91 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------   91 (239)
                      ++|+++|++++|+++   ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+++.            
T Consensus         3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~   82 (648)
T PRK10535          3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ   82 (648)
T ss_pred             cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence            479999999999532   36899999999999999999999999999999999999999999988763            


Q ss_pred             ---eEEEEEeeccCCCCCCCCcHHHHHH--HhCCC----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHh
Q 026376           92 ---VRIAVFSQHHVDGLDLSSNPLLYMM--RCFPG----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT  162 (239)
Q Consensus        92 ---~~~~~~~q~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral  162 (239)
                         ..++|++|++....  ..+..+++.  .....    ...+++.++++.+++.+ ..++++.+||+||+||++|||||
T Consensus        83 ~~~~~i~~v~q~~~l~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~-~~~~~~~~LS~Gq~qrv~LAraL  159 (648)
T PRK10535         83 LRREHFGFIFQRYHLLS--HLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLED-RVEYQPSQLSGGQQQRVSIARAL  159 (648)
T ss_pred             HHhccEEEEeCCcccCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-hhcCCcccCCHHHHHHHHHHHHH
Confidence               24899999874221  123333222  11111    12345778899999974 56788999999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376          163 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       163 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                      +.+|++|||||||++||+.+++.+.+.++++   +.|+|++||+.+.+. .||++++|++|+++ ..|+.++.
T Consensus       160 ~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~~  230 (648)
T PRK10535        160 MNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAA-QAERVIEIRDGEIV-RNPPAQEK  230 (648)
T ss_pred             hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH-hCCEEEEEECCEEE-eecCcccc
Confidence            9999999999999999999999888777643   569999999999886 69999999999997 56666543

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5e-41  Score=263.96  Aligned_cols=200  Identities=25%  Similarity=0.361  Sum_probs=165.4

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------------
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------   91 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------   91 (239)
                      .|.+++.++++.|++ ..-.+||||++.|||+.+|+|++||||||||+||++-+.|++|+|.+..+              
T Consensus         4 ~PLL~V~~lsk~Yg~-~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae   82 (258)
T COG4107           4 KPLLSVSGLSKLYGP-GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE   82 (258)
T ss_pred             CcceeehhhhhhhCC-CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence            568999999999954 46789999999999999999999999999999999999999999976531              


Q ss_pred             ------eEEEEEeeccCCCCCCCC----cHHHHHHH---hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHH
Q 026376           92 ------VRIAVFSQHHVDGLDLSS----NPLLYMMR---CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF  158 (239)
Q Consensus        92 ------~~~~~~~q~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~l  158 (239)
                            ..-|++.|+|.+.+....    |.-+.++.   ...+.-+..+.++|+.+.+.....+..+.++||||+||+.|
T Consensus        83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQi  162 (258)
T COG4107          83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQI  162 (258)
T ss_pred             HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHH
Confidence                  247999999876654332    22222221   12233456778899999997665666779999999999999


Q ss_pred             HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCC
Q 026376          159 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHG  227 (239)
Q Consensus       159 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~----~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g  227 (239)
                      ||-|+..|+++++||||.|||..-+..+++.++    +.+-++++||||+..+.-+++|.++|++|++++ .|
T Consensus       163 ARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve-~G  234 (258)
T COG4107         163 ARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVE-SG  234 (258)
T ss_pred             HHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEec-cc
Confidence            999999999999999999999998888877665    446799999999999999999999999999873 44

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=100.00  E-value=5.9e-41  Score=295.17  Aligned_cols=171  Identities=27%  Similarity=0.351  Sum_probs=140.4

Q ss_pred             EECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCCc----H
Q 026376           60 MVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----E  124 (239)
Q Consensus        60 iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~  124 (239)
                      |+||||||||||+|+|+|+++|++|+|.+++.         ..++|++|++..  ....+...++..  ......    .
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l--~~~~tv~enl~~~~~~~~~~~~~~~   78 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYAL--FPHMTVEENVAFGLKMRKVPRAEIK   78 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccc--cCCCcHHHHHHHHHhhcCCCHHHHH
Confidence            68999999999999999999999999998763         258999998642  222344444321  111111    3


Q ss_pred             HHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEE
Q 026376          125 QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMV  200 (239)
Q Consensus       125 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~v  200 (239)
                      +++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.+++.    +.|||+|
T Consensus        79 ~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiiv  157 (325)
T TIGR01187        79 PRVLEALRLVQLEE-FADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFV  157 (325)
T ss_pred             HHHHHHHHHcCCcc-hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            46788999999974 567889999999999999999999999999999999999999999888777542    5799999


Q ss_pred             ecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          201 SHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       201 sHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |||++++..+||++++|++|++. ..|+++++.+
T Consensus       158 THd~~e~~~~~d~i~vl~~G~i~-~~g~~~~~~~  190 (325)
T TIGR01187       158 THDQEEAMTMSDRIAIMRKGKIA-QIGTPEEIYE  190 (325)
T ss_pred             eCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence            99999999999999999999997 5788887654

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=6.4e-41  Score=324.90  Aligned_cols=202  Identities=26%  Similarity=0.381  Sum_probs=173.5

Q ss_pred             eEEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376           28 IISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI   94 (239)
Q Consensus        28 ~l~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~   94 (239)
                      -++++||+|+||.+  .++|+|+||++++|+.+|||||+||||||.+.+|-.++.|++|.|.+++.           .++
T Consensus       987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i 1066 (1228)
T KOG0055|consen  987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQI 1066 (1228)
T ss_pred             EEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhc
Confidence            49999999999854  46999999999999999999999999999999999999999999999874           369


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhcc
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFK  164 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~~  164 (239)
                      +.|.|+|..   +..+..+++.......+++++.++++..+.++...          ..+..+||||||||+|||||+++
T Consensus      1067 ~lVsQEP~L---F~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilR 1143 (1228)
T KOG0055|consen 1067 GLVSQEPVL---FNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILR 1143 (1228)
T ss_pred             ceeccCchh---hcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHc
Confidence            999999853   33466666654333467888888888776643222          23456899999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      +|+||||||.||+||.++.+.+.+.|.+.  +.|.|+|+|.+..+. .||.|+++++|+|+ +.|+++++.+
T Consensus      1144 nPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIq-naD~I~Vi~~G~Vv-E~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1144 NPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQ-NADVIAVLKNGKVV-EQGTHDELLA 1213 (1228)
T ss_pred             CCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhh-cCCEEEEEECCEEE-ecccHHHHHh
Confidence            99999999999999999999999999764  679999999999997 59999999999997 6899999876

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=1.6e-40  Score=263.50  Aligned_cols=153  Identities=35%  Similarity=0.566  Sum_probs=125.7

Q ss_pred             EEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCc
Q 026376           31 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSN  110 (239)
Q Consensus        31 ~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~  110 (239)
                      ++|+++.|++ ..+|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|++++... .        ..    .
T Consensus         2 ~~~~~~~~~~-~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~-~--------~~----~   67 (157)
T cd00267           2 IENLSFRYGG-RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDI-A--------KL----P   67 (157)
T ss_pred             eEEEEEEeCC-eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEc-c--------cC----C
Confidence            6899999954 4699999999999999999999999999999999999999999998776310 0        00    0


Q ss_pred             HHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 026376          111 PLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL  190 (239)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l  190 (239)
                                   ..   .....++..        .+||+||+||++|||+++.+|++++|||||++||..++..+.+.+
T Consensus        68 -------------~~---~~~~~i~~~--------~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l  123 (157)
T cd00267          68 -------------LE---ELRRRIGYV--------PQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELL  123 (157)
T ss_pred             -------------HH---HHHhceEEE--------eeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence                         00   000011110        019999999999999999999999999999999999999888877


Q ss_pred             hhc---CCEEEEEecCHHHHhhhcCeEEEEeCCe
Q 026376          191 VLF---QGGILMVSHDEHLISGSVEELWVVSEGK  221 (239)
Q Consensus       191 ~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~  221 (239)
                      .+.   +.|+|++||+++++..+||+++++++|+
T Consensus       124 ~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~  157 (157)
T cd00267         124 RELAEEGRTVIIVTHDPELAELAADRVIVLKDGK  157 (157)
T ss_pred             HHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence            653   3599999999999999999999999875

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=1.9e-40  Score=289.11  Aligned_cols=206  Identities=24%  Similarity=0.360  Sum_probs=167.9

Q ss_pred             CCCeEEEEeeEEEcC---CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-----CceeEEecCc-----
Q 026376           25 GPPIISFSDASFGYP---GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-----SSGTVFRSAK-----   91 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~---~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-----~~G~i~~~~~-----   91 (239)
                      ..++|+++|+++.|.   +...++++|||+|++||.+||+|+||||||-..+.|+|+++.     -+|+|.+++.     
T Consensus         3 ~~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~   82 (534)
T COG4172           3 TMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA   82 (534)
T ss_pred             CCcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence            356899999999994   234689999999999999999999999999999999999875     3688988763     


Q ss_pred             ----------eEEEEEeeccCCCCCCCCcHHHHH---HHhCCC----CcHHHHHHHHHhcCCCcc--cccCCCCCCChHH
Q 026376           92 ----------VRIAVFSQHHVDGLDLSSNPLLYM---MRCFPG----VPEQKLRAHLGSFGVTGN--LALQPMYTLSGGQ  152 (239)
Q Consensus        92 ----------~~~~~~~q~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~l~~~~l~~~--~~~~~~~~LSgGq  152 (239)
                                .+|+++||+|...+++..+.-..+   ...+.+    ..+.++.++|+.+|+.+.  ..+.++++|||||
T Consensus        83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGq  162 (534)
T COG4172          83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQ  162 (534)
T ss_pred             CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcch
Confidence                      269999999875555433322111   122222    345678889999999643  2456789999999


Q ss_pred             HHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCC
Q 026376          153 KSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGT  228 (239)
Q Consensus       153 kqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~  228 (239)
                      ||||+||.||+.+|++||.||||.+||..-+.++++.|++.    +.++++||||+..+.++||||++|.+|+++ ..|+
T Consensus       163 RQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv-E~~~  241 (534)
T COG4172         163 RQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV-ETGT  241 (534)
T ss_pred             hhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe-ecCc
Confidence            99999999999999999999999999999888888777643    669999999999999999999999999997 4565


Q ss_pred             hhH
Q 026376          229 FHD  231 (239)
Q Consensus       229 ~~~  231 (239)
                      .++
T Consensus       242 t~~  244 (534)
T COG4172         242 TET  244 (534)
T ss_pred             HHH
Confidence            543

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=100.00  E-value=4.1e-40  Score=293.76  Aligned_cols=207  Identities=24%  Similarity=0.393  Sum_probs=173.0

Q ss_pred             CCeEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eE
Q 026376           26 PPIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR   93 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~   93 (239)
                      ...|.++++++.-|+. +++++++||++.+||.++||||||||||||.|+|.|..+|.+|.|..++.           ..
T Consensus       332 ~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~h  411 (580)
T COG4618         332 QGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRH  411 (580)
T ss_pred             CceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccc
Confidence            3469999999977654 47999999999999999999999999999999999999999999998763           46


Q ss_pred             EEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc------C----CCCCCChHHHHHHHHHHHhc
Q 026376           94 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL------Q----PMYTLSGGQKSRVAFAKITF  163 (239)
Q Consensus        94 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~------~----~~~~LSgGqkqrv~laral~  163 (239)
                      +||+||+...   +..+..+++.+.....+.+++.++.+..+.++-...      .    -...||||||||++|||||.
T Consensus       412 iGYLPQdVeL---F~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlY  488 (580)
T COG4618         412 IGYLPQDVEL---FDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALY  488 (580)
T ss_pred             cCcCccccee---cCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHc
Confidence            9999998632   346777888776556677777777666665432211      1    23579999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHHhh
Q 026376          164 KKPHIILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQ  237 (239)
Q Consensus       164 ~~p~llllDEPt~~LD~~~~~~l~~~l~---~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~  237 (239)
                      .+|.+++||||-++||.+....+.+.+.   ..++|+|+|||.+..+. .+|+|++|++|++. ..|+.+|+..++.
T Consensus       489 G~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~-~~Dkilvl~~G~~~-~FG~r~eVLa~~~  563 (580)
T COG4618         489 GDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALA-SVDKILVLQDGRIA-AFGPREEVLAKVL  563 (580)
T ss_pred             CCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHh-hcceeeeecCChHH-hcCCHHHHHHHhc
Confidence            9999999999999999999988877664   45789999999999886 69999999999997 4599999887654

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=6.7e-40  Score=334.05  Aligned_cols=201  Identities=19%  Similarity=0.301  Sum_probs=169.0

Q ss_pred             CeEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376           27 PIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI   94 (239)
Q Consensus        27 ~~l~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~   94 (239)
                      ..|+++||+++|++ .+.+|+|+||+|++||++||+|+||||||||+++|+|+++ .+|+|.+++.           .++
T Consensus      1216 g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~i 1294 (1490)
T TIGR01271      1216 GQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAF 1294 (1490)
T ss_pred             CeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhce
Confidence            46999999999964 3579999999999999999999999999999999999997 7999998873           369


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccC----------CCCCCChHHHHHHHHHHHhcc
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ----------PMYTLSGGQKSRVAFAKITFK  164 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgGqkqrv~laral~~  164 (239)
                      +|+||++..   +..+...++.. ....+++++.++++.+++.+.....          ....||||||||++|||||++
T Consensus      1295 s~IpQdp~L---F~GTIR~NLdp-~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr 1370 (1490)
T TIGR01271      1295 GVIPQKVFI---FSGTFRKNLDP-YEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILS 1370 (1490)
T ss_pred             EEEeCCCcc---CccCHHHHhCc-ccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhC
Confidence            999999853   33566666532 2234678899999999885432221          224799999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      +|+|||||||||+||.++...+.+.|++.  ++|||+|||+++.+.. ||+|++|++|+++ ..|+++++.+
T Consensus      1371 ~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-~DrIlvL~~G~iv-E~g~p~~Ll~ 1440 (1490)
T TIGR01271      1371 KAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE-CQQFLVIEGSSVK-QYDSIQKLLN 1440 (1490)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEE-EeCCHHHHHc
Confidence            99999999999999999999999988764  5699999999999875 9999999999998 4688888763

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=2.6e-40  Score=310.71  Aligned_cols=184  Identities=20%  Similarity=0.263  Sum_probs=148.6

Q ss_pred             EeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEE-----------ecCc---------
Q 026376           32 SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF-----------RSAK---------   91 (239)
Q Consensus        32 ~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~-----------~~~~---------   91 (239)
                      ++++++|+++..+|++++ .+++|++++|+||||||||||+|+|+|+++|++|+|.           +++.         
T Consensus        77 ~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~  155 (590)
T PRK13409         77 EEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL  155 (590)
T ss_pred             cCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence            348899964456899999 9999999999999999999999999999999999996           4431         


Q ss_pred             ----eEEEEEeeccCCCCC-CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 026376           92 ----VRIAVFSQHHVDGLD-LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP  166 (239)
Q Consensus        92 ----~~~~~~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p  166 (239)
                          ..+++.+|....... +..+..+.+..   .....++.++++.+++.. ..++++.+|||||||||+||+||+.+|
T Consensus       156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~---~~~~~~~~~~l~~l~l~~-~~~~~~~~LSgGe~qrv~ia~al~~~p  231 (590)
T PRK13409        156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKK---VDERGKLDEVVERLGLEN-ILDRDISELSGGELQRVAIAAALLRDA  231 (590)
T ss_pred             hccCcceeecccchhhhhhhhcchHHHHHHh---hhHHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence                235666664321111 11233333321   112456788999999964 568899999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCC
Q 026376          167 HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEG  220 (239)
Q Consensus       167 ~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G  220 (239)
                      ++|||||||++||+.++.++.+.++++  +.|||+||||++++..+||++++|+++
T Consensus       232 ~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~  287 (590)
T PRK13409        232 DFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE  287 (590)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence            999999999999999999888877665  789999999999999999999999763

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.9e-40  Score=290.48  Aligned_cols=220  Identities=45%  Similarity=0.860  Sum_probs=196.6

Q ss_pred             ccccCCCCCCCCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEE
Q 026376           15 FEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRI   94 (239)
Q Consensus        15 ~~~~~~~~~~~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~   94 (239)
                      |.||.|+. -.+|+|-+.+|+|.|++.+++|++++|-|.-...+||+||||.||||||++|.|-+.|..|+...+.+.+|
T Consensus       574 F~FPep~~-L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~i  652 (807)
T KOG0066|consen  574 FQFPEPTK-LNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRI  652 (807)
T ss_pred             EecCCCCC-CCCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeee
Confidence            44544432 24678999999999988889999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP  174 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEP  174 (239)
                      |++.|.....++...++..++.+.+ +.+.+.++..|..||+..+...-.+..|||||+.||++|-.-+..|+|||||||
T Consensus       653 G~FdQh~~E~L~~Eetp~EyLqr~F-Nlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEP  731 (807)
T KOG0066|consen  653 GWFDQHANEALNGEETPVEYLQRKF-NLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEP  731 (807)
T ss_pred             echhhhhHHhhccccCHHHHHHHhc-CCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCC
Confidence            9999987666666778888877665 567889999999999976655567899999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHHh
Q 026376          175 SNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKML  236 (239)
Q Consensus       175 t~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~  236 (239)
                      ||+||++++..+.+.++++++.|||||||-.++.+..-..|++++..|-..+|.+++|.+..
T Consensus       732 TNNLDIESIDALaEAIney~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeDYkkEV  793 (807)
T KOG0066|consen  732 TNNLDIESIDALAEAINEYNGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFEDYKKEV  793 (807)
T ss_pred             CCCcchhhHHHHHHHHHhccCcEEEEecccceeeecCceEEEEccCChhhccccHHHHHHHH
Confidence            99999999999999999999999999999999988777899999988888899999998654

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.5e-39  Score=261.43  Aligned_cols=208  Identities=21%  Similarity=0.341  Sum_probs=167.6

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC--cCCCceeEEecCc------------e
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE--LQPSSGTVFRSAK------------V   92 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl--~~p~~G~i~~~~~------------~   92 (239)
                      .+|+++||+.+..+++.+|++|||+|++||+.+|+||||||||||.++|+|.  +++++|+|.+++.            .
T Consensus         2 ~~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~   81 (251)
T COG0396           2 MMLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA   81 (251)
T ss_pred             ceeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence            4799999999995434799999999999999999999999999999999997  4789999998874            3


Q ss_pred             EEEEEeeccCCCCCCCCcHHHHHHHh----CCC-----CcHHHHHHHHHhcCCCcccccCCCC-CCChHHHHHHHHHHHh
Q 026376           93 RIAVFSQHHVDGLDLSSNPLLYMMRC----FPG-----VPEQKLRAHLGSFGVTGNLALQPMY-TLSGGQKSRVAFAKIT  162 (239)
Q Consensus        93 ~~~~~~q~~~~~~~~~~~~~~~~~~~----~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkqrv~laral  162 (239)
                      .+...+|.|....-+  +...++...    ...     ....++++.++.+++.+..++|.+. .+|||||+|..|+.++
T Consensus        82 GifLafQ~P~ei~GV--~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~  159 (251)
T COG0396          82 GIFLAFQYPVEIPGV--TNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLL  159 (251)
T ss_pred             CCEEeecCCccCCCe--eHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHH
Confidence            577888987533222  222222211    111     2245678899999998877777764 5999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHH---HHhhcCCEEEEEecCHHHHhhhc-CeEEEEeCCeEEeeCCChhHHHHHhhc
Q 026376          163 FKKPHIILLDEPSNHLDLDAVEALIQ---GLVLFQGGILMVSHDEHLISGSV-EELWVVSEGKATPFHGTFHDYKKMLQS  238 (239)
Q Consensus       163 ~~~p~llllDEPt~~LD~~~~~~l~~---~l~~~~~tii~vsHd~~~~~~~~-d~i~~l~~G~i~~~~g~~~~~~~~~~~  238 (239)
                      +.+|++.|||||-||||..+.+.+.+   .+++.+.++++|||....+..+- |++.+|-+|+|+ ..|.+ ++.++++.
T Consensus       160 ~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv-~sG~~-el~~~le~  237 (251)
T COG0396         160 LLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIV-KSGDP-ELAEELEE  237 (251)
T ss_pred             hcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEE-ecCCH-HHHHHHHH
Confidence            99999999999999999998877655   44555779999999999888653 999999999997 68888 77666553

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=4.2e-39  Score=328.94  Aligned_cols=199  Identities=22%  Similarity=0.336  Sum_probs=162.2

Q ss_pred             eEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCC
Q 026376           28 IISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD  106 (239)
Q Consensus        28 ~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~  106 (239)
                      .++++|+++.|++. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++  .++|++|++..   
T Consensus       636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~yv~Q~~~l---  710 (1522)
T TIGR00957       636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG--SVAYVPQQAWI---  710 (1522)
T ss_pred             cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC--EEEEEcCCccc---
Confidence            69999999999643 4699999999999999999999999999999999999999999999876  59999999752   


Q ss_pred             CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcc----------cccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 026376          107 LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN  176 (239)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~  176 (239)
                      +..+..+++.... ..+.++..++++.+++.++          .......+||||||||++||||++.+|+++||||||+
T Consensus       711 ~~~Ti~eNI~~g~-~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~s  789 (1522)
T TIGR00957       711 QNDSLRENILFGK-ALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLS  789 (1522)
T ss_pred             cCCcHHHHhhcCC-ccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence            2345666654221 2234444444444433211          1235578999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHhh-----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          177 HLDLDAVEALIQGLVL-----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       177 ~LD~~~~~~l~~~l~~-----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      +||+.+...+.+.+.+     .+.|+|+|||+++.+.. ||+|++|++|++. ..|+++++.+
T Consensus       790 aLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i~-~~g~~~~l~~  850 (1522)
T TIGR00957       790 AVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMSGGKIS-EMGSYQELLQ  850 (1522)
T ss_pred             ccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEecCCeEE-eeCCHHHHHh
Confidence            9999999999887742     24699999999999875 9999999999997 6798887753

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=4e-39  Score=265.79  Aligned_cols=190  Identities=28%  Similarity=0.344  Sum_probs=148.7

Q ss_pred             CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHH--HHHhC
Q 026376           42 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLY--MMRCF  119 (239)
Q Consensus        42 ~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~--~~~~~  119 (239)
                      ..+|+||||++++||.+||+|+||||||||+|+|+|.++|++|+|..+++..  ++..-. ..+....+..++  +....
T Consensus        40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~--~li~lg-~Gf~pelTGreNi~l~~~~  116 (249)
T COG1134          40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVA--PLIELG-AGFDPELTGRENIYLRGLI  116 (249)
T ss_pred             EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEe--hhhhcc-cCCCcccchHHHHHHHHHH
Confidence            4689999999999999999999999999999999999999999999887632  211110 111111222222  11112


Q ss_pred             CCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---
Q 026376          120 PGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---  192 (239)
Q Consensus       120 ~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~---  192 (239)
                      .+.    -.+.++++.+..+|. +..++|++++|-||+-|+++|.|...+|++||+||-.+..|+.-++.-.+.+.+   
T Consensus       117 ~G~~~~ei~~~~~eIieFaELG-~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~  195 (249)
T COG1134         117 LGLTRKEIDEKVDEIIEFAELG-DFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVE  195 (249)
T ss_pred             hCccHHHHHHHHHHHHHHHHHH-HHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHH
Confidence            222    244566777777775 456899999999999999999999999999999999999999876655554443   


Q ss_pred             cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHHh
Q 026376          193 FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKML  236 (239)
Q Consensus       193 ~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~  236 (239)
                      .+.|||+||||++.+.++||++++|++|++. +.|++++..+..
T Consensus       196 ~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~-~~G~~~~vi~~Y  238 (249)
T COG1134         196 KNKTIVLVSHDLGAIKQYCDRAIWLEHGQIR-MEGSPEEVIPAY  238 (249)
T ss_pred             cCCEEEEEECCHHHHHHhcCeeEEEeCCEEE-EcCCHHHHHHHH
Confidence            3579999999999999999999999999997 789998876654

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=4.3e-39  Score=328.48  Aligned_cols=201  Identities=21%  Similarity=0.344  Sum_probs=164.5

Q ss_pred             CeEEEEeeEEEcCC--CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCC
Q 026376           27 PIISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG  104 (239)
Q Consensus        27 ~~l~~~~l~~~y~~--~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~  104 (239)
                      ..++++|++|+|++  ++++|+|+||+|++|+.++|+||+|||||||+++|+|+++|++|.+.. -+..++|++|++.. 
T Consensus       613 ~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~-~~~~Iayv~Q~p~L-  690 (1495)
T PLN03232        613 PAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV-IRGSVAYVPQVSWI-  690 (1495)
T ss_pred             CcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE-ecCcEEEEcCcccc-
Confidence            35999999999964  256899999999999999999999999999999999999999987642 23469999999853 


Q ss_pred             CCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 026376          105 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP  174 (239)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~~~p~llllDEP  174 (239)
                        ++.+..+++.... ..+++++.++++.+++.++..          .....+||||||||++||||+.++|+|+|||||
T Consensus       691 --f~gTIreNI~fg~-~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEp  767 (1495)
T PLN03232        691 --FNATVRENILFGS-DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDP  767 (1495)
T ss_pred             --ccccHHHHhhcCC-ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence              3456666665322 346778888888887754332          123457999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHH-Hhh--cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          175 SNHLDLDAVEALIQG-LVL--FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       175 t~~LD~~~~~~l~~~-l~~--~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      ||+||.++...+++. +..  .++|+|+|||+++.+. .||+|++|++|+++ ..|+++++.+
T Consensus       768 tSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~-~aD~Ii~L~~G~i~-~~Gt~~eL~~  828 (1495)
T PLN03232        768 LSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLP-LMDRIILVSEGMIK-EEGTFAELSK  828 (1495)
T ss_pred             ccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHH-hCCEEEEEeCCEEE-EecCHHHHHh
Confidence            999999998877665 333  3579999999999876 59999999999997 6899988753

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=5.5e-39  Score=328.49  Aligned_cols=200  Identities=22%  Similarity=0.365  Sum_probs=165.6

Q ss_pred             CeEEEEeeEEEcCC--CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCc-eeEEecCceEEEEEeeccCC
Q 026376           27 PIISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS-GTVFRSAKVRIAVFSQHHVD  103 (239)
Q Consensus        27 ~~l~~~~l~~~y~~--~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~-G~i~~~~~~~~~~~~q~~~~  103 (239)
                      ..++++|++|+|+.  ++++|+|+||+|++|++++|+||+|||||||+++|+|+++|++ |+|...+  .++|++|+++.
T Consensus       613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~--~Iayv~Q~p~L  690 (1622)
T PLN03130        613 PAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG--TVAYVPQVSWI  690 (1622)
T ss_pred             CceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcC--eEEEEcCcccc
Confidence            35999999999964  2568999999999999999999999999999999999999999 9998643  69999999853


Q ss_pred             CCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 026376          104 GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKKPHIILLDE  173 (239)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~~~p~llllDE  173 (239)
                         ++.+..+++.... ..+++++.++++.+++.++..          .....+||||||||++||||+.++|+|+||||
T Consensus       691 ---fngTIreNI~fg~-~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDE  766 (1622)
T PLN03130        691 ---FNATVRDNILFGS-PFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDD  766 (1622)
T ss_pred             ---CCCCHHHHHhCCC-cccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECC
Confidence               3456666665322 346778888888888754322          12345799999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHH-Hhh--cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          174 PSNHLDLDAVEALIQG-LVL--FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       174 Pt~~LD~~~~~~l~~~-l~~--~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |||+||.++.+.+++. +..  .++|+|+|||+++.+. .||+|++|++|++. ..|+++++.+
T Consensus       767 ptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~-~aD~Ii~L~~G~i~-e~Gt~~eL~~  828 (1622)
T PLN03130        767 PLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLS-QVDRIILVHEGMIK-EEGTYEELSN  828 (1622)
T ss_pred             CccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHH-hCCEEEEEeCCEEE-EeCCHHHHHh
Confidence            9999999988777643 443  3579999999999876 59999999999997 6899988754

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=9.7e-39  Score=323.52  Aligned_cols=200  Identities=17%  Similarity=0.283  Sum_probs=161.0

Q ss_pred             CCeEEEEeeEEEcC---CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC---CCceeEEecCc-------e
Q 026376           26 PPIISFSDASFGYP---GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ---PSSGTVFRSAK-------V   92 (239)
Q Consensus        26 ~~~l~~~~l~~~y~---~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~~-------~   92 (239)
                      ..+++++||++.|+   +++.+|+|||+++++||+++|+|||||||||||++|+|+.+   |++|+|.+++.       .
T Consensus       757 ~~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~  836 (1394)
T TIGR00956       757 EDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQR  836 (1394)
T ss_pred             CceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhc
Confidence            34689999999994   23579999999999999999999999999999999999997   78999998874       3


Q ss_pred             EEEEEeeccCCCCCCCCcHHHHHH--Hh-C-C-CCc----HHHHHHHHHhcCCCcccccCCCC----CCChHHHHHHHHH
Q 026376           93 RIAVFSQHHVDGLDLSSNPLLYMM--RC-F-P-GVP----EQKLRAHLGSFGVTGNLALQPMY----TLSGGQKSRVAFA  159 (239)
Q Consensus        93 ~~~~~~q~~~~~~~~~~~~~~~~~--~~-~-~-~~~----~~~~~~~l~~~~l~~~~~~~~~~----~LSgGqkqrv~la  159 (239)
                      .++|++|++...  ...++.+.+.  .. . + ...    .++++++++.+++.+ ..++.++    .|||||||||+||
T Consensus       837 ~i~yv~Q~~~~~--~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~-~~d~~v~~~~~~LSgGqrqRl~Ia  913 (1394)
T TIGR00956       837 SIGYVQQQDLHL--PTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES-YADAVVGVPGEGLNVEQRKRLTIG  913 (1394)
T ss_pred             ceeeecccccCC--CCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-hCCCeeCCCCCCCCHHHhhHHHHH
Confidence            589999985322  2233433332  11 1 1 111    245788999999964 4566666    7999999999999


Q ss_pred             HHhccCCC-EEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHH-HhhhcCeEEEEeCC-eEEeeCCCh
Q 026376          160 KITFKKPH-IILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHL-ISGSVEELWVVSEG-KATPFHGTF  229 (239)
Q Consensus       160 ral~~~p~-llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~-~~~~~d~i~~l~~G-~i~~~~g~~  229 (239)
                      ++|+.+|+ ||+|||||+|||..+...+++.|++.   +.|||+++|+++. +.+.||++++|++| +++ +.|+.
T Consensus       914 ~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv-~~G~~  988 (1394)
T TIGR00956       914 VELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTV-YFGDL  988 (1394)
T ss_pred             HHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEE-EECCc
Confidence            99999997 99999999999999999888877653   6799999999986 45679999999997 886 67775

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=100.00  E-value=7.8e-39  Score=303.12  Aligned_cols=192  Identities=21%  Similarity=0.283  Sum_probs=155.8

Q ss_pred             CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCC---ceeEEecCce--------EEEEEeeccCCCCCCCC
Q 026376           41 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS---SGTVFRSAKV--------RIAVFSQHHVDGLDLSS  109 (239)
Q Consensus        41 ~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~~~--------~~~~~~q~~~~~~~~~~  109 (239)
                      ++.+|+|+|+++++||+++|+|||||||||||++|+|..+|.   +|+|.+++..        .++|++|++...  ...
T Consensus        37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~--~~l  114 (617)
T TIGR00955        37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFI--PTL  114 (617)
T ss_pred             ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccC--ccC
Confidence            456999999999999999999999999999999999999885   7999988753        479999986422  223


Q ss_pred             cHHHHHH--HhC--CC-----CcHHHHHHHHHhcCCCcccccCCCC------CCChHHHHHHHHHHHhccCCCEEEEeCC
Q 026376          110 NPLLYMM--RCF--PG-----VPEQKLRAHLGSFGVTGNLALQPMY------TLSGGQKSRVAFAKITFKKPHIILLDEP  174 (239)
Q Consensus       110 ~~~~~~~--~~~--~~-----~~~~~~~~~l~~~~l~~~~~~~~~~------~LSgGqkqrv~laral~~~p~llllDEP  174 (239)
                      ++.+++.  ...  +.     ...+++.++++.+|+.+ ..+.+++      .|||||||||+||++|+.+|++++||||
T Consensus       115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEP  193 (617)
T TIGR00955       115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRK-CANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEP  193 (617)
T ss_pred             cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchh-cCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCC
Confidence            3433332  111  11     11245788999999974 4456655      5999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHhhc---CCEEEEEecCHH-HHhhhcCeEEEEeCCeEEeeCCChhHHHHHh
Q 026376          175 SNHLDLDAVEALIQGLVLF---QGGILMVSHDEH-LISGSVEELWVVSEGKATPFHGTFHDYKKML  236 (239)
Q Consensus       175 t~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~-~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~  236 (239)
                      |+|||..+...+++.+++.   +.|||+++|++. .+..+||++++|++|+++ +.|++++..+..
T Consensus       194 tsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v-~~G~~~~~~~~f  258 (617)
T TIGR00955       194 TSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVA-YLGSPDQAVPFF  258 (617)
T ss_pred             CcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEE-EECCHHHHHHHH
Confidence            9999999999888877653   679999999985 678899999999999997 789988876544

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=4e-39  Score=255.02  Aligned_cols=205  Identities=24%  Similarity=0.335  Sum_probs=167.5

Q ss_pred             CeEEEEeeEEEcCCC--------CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------
Q 026376           27 PIISFSDASFGYPGG--------PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------   91 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~--------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------   91 (239)
                      +.++++|+++.|...        ..+++.|||++.+|+.+||+|.||||||||.|+|+|.++|++|+|.+++.       
T Consensus         3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy   82 (267)
T COG4167           3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDY   82 (267)
T ss_pred             chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccch
Confidence            468999999988432        23789999999999999999999999999999999999999999998874       


Q ss_pred             ----eEEEEEeeccCCCCCCCCcHHH---HHHHhC----CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 026376           92 ----VRIAVFSQHHVDGLDLSSNPLL---YMMRCF----PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK  160 (239)
Q Consensus        92 ----~~~~~~~q~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lar  160 (239)
                          ..|-++||++...+++..+.-.   .-....    +....+++.+.|+.+|+-.+.++-++..||-||||||++||
T Consensus        83 ~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLAR  162 (267)
T COG4167          83 SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALAR  162 (267)
T ss_pred             HhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHH
Confidence                3588999998655544332111   101111    11224577888999999888888899999999999999999


Q ss_pred             HhccCCCEEEEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376          161 ITFKKPHIILLDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       161 al~~~p~llllDEPt~~LD~~~~~~l~~~l~----~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                      ||+.+|+++|.||..++||...+.++++...    +.|.+.|.|+.++..+..++|.|++|++|++++ .|++.++
T Consensus       163 ALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE-~G~t~~v  237 (267)
T COG4167         163 ALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVE-RGSTADV  237 (267)
T ss_pred             HHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceee-cCChhhh
Confidence            9999999999999999999998887776543    346799999999999999999999999999984 5766554

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.3e-39  Score=289.30  Aligned_cols=203  Identities=28%  Similarity=0.440  Sum_probs=167.6

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV   96 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~   96 (239)
                      -++++||+|.|..++++|+||||++.+|+.+||+||+|+||||++|+|..+....+|.|.+++.           ..||.
T Consensus       537 ~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGV  616 (790)
T KOG0056|consen  537 KIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGV  616 (790)
T ss_pred             eEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCc
Confidence            5899999999988889999999999999999999999999999999999999999999999884           36999


Q ss_pred             EeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhccCC
Q 026376           97 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKKP  166 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~~~p  166 (239)
                      +||+...   ++.+.+.++....+....+++.++.+..++++...          ..+.-.|||||||||||||+++..|
T Consensus       617 VPQDtvL---FNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P  693 (790)
T KOG0056|consen  617 VPQDTVL---FNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAP  693 (790)
T ss_pred             ccCccee---ecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCC
Confidence            9998642   22334444432334455666666666555532211          1234579999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376          167 HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  235 (239)
Q Consensus       167 ~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  235 (239)
                      .+++|||.||+||..+.+++...|.+.  +.|-|+|.|.+..+- .||.|+++++|.|+ ..|+.+|+..+
T Consensus       694 ~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTiv-nAD~ILvi~~G~Iv-ErG~HeeLl~r  762 (790)
T KOG0056|consen  694 SIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIV-NADLILVISNGRIV-ERGRHEELLKR  762 (790)
T ss_pred             cEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehhee-cccEEEEEeCCeEe-ecCcHHHHHhc
Confidence            999999999999999999988888775  569999999999987 49999999999997 68998887654

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=6.8e-38  Score=262.66  Aligned_cols=179  Identities=22%  Similarity=0.253  Sum_probs=126.2

Q ss_pred             CCceeeeeeEEEeCCCEEEEECCCCCcHHHHH-HHHhc--------------------CcCCCceeEEecCceEEEEEee
Q 026376           41 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTIL-KLIAG--------------------ELQPSSGTVFRSAKVRIAVFSQ   99 (239)
Q Consensus        41 ~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl-~~l~G--------------------l~~p~~G~i~~~~~~~~~~~~q   99 (239)
                      +..+|+++||+|++||+++|+|+||||||||+ ..|..                    +..|+.+.+.   .....+..|
T Consensus         7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~   83 (226)
T cd03270           7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIE---GLSPAIAID   83 (226)
T ss_pred             hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCcccccccc---CCCceEEec
Confidence            45689999999999999999999999999995 44321                    1111111110   011234444


Q ss_pred             ccCCCCCCCCcHH------HHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC--CEEEE
Q 026376          100 HHVDGLDLSSNPL------LYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP--HIILL  171 (239)
Q Consensus       100 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p--~llll  171 (239)
                      ++....+...+..      ..+...+......+..++++.+++.....++++.+||||||||++|||||+.+|  ++|||
T Consensus        84 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llll  163 (226)
T cd03270          84 QKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVL  163 (226)
T ss_pred             CCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEE
Confidence            4322222222211      011111111122233578999999753467889999999999999999999998  59999


Q ss_pred             eCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEE------eCCeEE
Q 026376          172 DEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVV------SEGKAT  223 (239)
Q Consensus       172 DEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l------~~G~i~  223 (239)
                      ||||++||+.++..+.+.+.+   .+.|||+||||++++. +||++++|      ++|+++
T Consensus       164 DEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~-~~d~i~~l~~~~~~~~G~iv  223 (226)
T cd03270         164 DEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIR-AADHVIDIGPGAGVHGGEIV  223 (226)
T ss_pred             eCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHH-hCCEEEEeCCCccccCCEEE
Confidence            999999999999888777654   4679999999999975 89999999      889987

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=9.4e-38  Score=318.34  Aligned_cols=184  Identities=25%  Similarity=0.422  Sum_probs=146.7

Q ss_pred             ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCC
Q 026376           43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGV  122 (239)
Q Consensus        43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~  122 (239)
                      ++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++  .++|++|++...   ..+..+++.... ..
T Consensus       440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g--~iayv~Q~~~l~---~~Ti~eNI~~g~-~~  513 (1490)
T TIGR01271       440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG--RISFSPQTSWIM---PGTIKDNIIFGL-SY  513 (1490)
T ss_pred             cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC--EEEEEeCCCccC---CccHHHHHHhcc-cc
Confidence            589999999999999999999999999999999999999999999877  599999997532   235555554211 12


Q ss_pred             cHHHHHHHHHhcCCCcc----------cccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHH-Hh
Q 026376          123 PEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQG-LV  191 (239)
Q Consensus       123 ~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~  191 (239)
                      +..+..++++.+++..+          ....+..+||||||||++||||++.+|+++||||||++||+.+...+.+. +.
T Consensus       514 ~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~  593 (1490)
T TIGR01271       514 DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLC  593 (1490)
T ss_pred             chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            22233334433333211          12345689999999999999999999999999999999999999988874 43


Q ss_pred             hc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          192 LF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       192 ~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      ..  +.|+|+|||+++.+.. ||++++|++|++. ..|+++++..
T Consensus       594 ~~~~~~tvilvtH~~~~~~~-ad~ii~l~~g~i~-~~g~~~~l~~  636 (1490)
T TIGR01271       594 KLMSNKTRILVTSKLEHLKK-ADKILLLHEGVCY-FYGTFSELQA  636 (1490)
T ss_pred             HHhcCCeEEEEeCChHHHHh-CCEEEEEECCEEE-EEcCHHHHHh
Confidence            32  5799999999999874 9999999999997 6798887753

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=2.8e-38  Score=255.65  Aligned_cols=195  Identities=27%  Similarity=0.362  Sum_probs=154.5

Q ss_pred             eEEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce-----------
Q 026376           28 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------   92 (239)
Q Consensus        28 ~l~~~~l~~~y~~~----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------   92 (239)
                      |+.+.|+.+.|..+    +++|+++|++|.+|+++.|+|.||||||||+++|+|-+.|++|+|.+++..           
T Consensus         1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~   80 (263)
T COG1101           1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN   80 (263)
T ss_pred             CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhh
Confidence            45667777776432    469999999999999999999999999999999999999999999988742           


Q ss_pred             EEEEEeeccCCCCCCCCcHHHHHHHhC-C----CC----c---HHHHHHHHHhcC--CCcccccCCCCCCChHHHHHHHH
Q 026376           93 RIAVFSQHHVDGLDLSSNPLLYMMRCF-P----GV----P---EQKLRAHLGSFG--VTGNLALQPMYTLSGGQKSRVAF  158 (239)
Q Consensus        93 ~~~~~~q~~~~~~~~~~~~~~~~~~~~-~----~~----~---~~~~~~~l~~~~--l~~~~~~~~~~~LSgGqkqrv~l  158 (239)
                      .++-+||+|........+..+++.... +    +.    .   .+..++.+..++  +. ...+.++.-|||||||-++|
T Consensus        81 ~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLe-nrL~~~iglLSGGQRQalsL  159 (263)
T COG1101          81 LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLE-NRLSDRIGLLSGGQRQALSL  159 (263)
T ss_pred             HHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchh-hhhcChhhhccchHHHHHHH
Confidence            367789998655444445555443211 0    11    1   223344555544  44 34567889999999999999


Q ss_pred             HHHhccCCCEEEEeCCCCCCCHHHHHHHHHH----HhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376          159 AKITFKKPHIILLDEPSNHLDLDAVEALIQG----LVLFQGGILMVSHDEHLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       159 aral~~~p~llllDEPt~~LD~~~~~~l~~~----l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~  223 (239)
                      +.|-++.|+||+|||-|++|||.....+++.    +.+.+-|.+||||+++.+..+.+|.++|++|+|+
T Consensus       160 ~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~Iv  228 (263)
T COG1101         160 LMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIV  228 (263)
T ss_pred             HHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEE
Confidence            9999999999999999999999998877653    3445679999999999999999999999999996

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=1.3e-37  Score=315.16  Aligned_cols=198  Identities=19%  Similarity=0.265  Sum_probs=158.2

Q ss_pred             eEEEEeeEEEcC------------CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC--CceeEEecCc--
Q 026376           28 IISFSDASFGYP------------GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP--SSGTVFRSAK--   91 (239)
Q Consensus        28 ~l~~~~l~~~y~------------~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~~--   91 (239)
                      .+.++||++.++            +++.+|+|||+++++|++++|+|||||||||||++|+|..++  .+|+|.+++.  
T Consensus       867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~  946 (1470)
T PLN03140        867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK  946 (1470)
T ss_pred             eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence            589999999873            123699999999999999999999999999999999999763  7899988763  


Q ss_pred             ------eEEEEEeeccCCCCCCCCcHHHHHH--Hh--CC-CCc----HHHHHHHHHhcCCCcccccCCC-----CCCChH
Q 026376           92 ------VRIAVFSQHHVDGLDLSSNPLLYMM--RC--FP-GVP----EQKLRAHLGSFGVTGNLALQPM-----YTLSGG  151 (239)
Q Consensus        92 ------~~~~~~~q~~~~~~~~~~~~~~~~~--~~--~~-~~~----~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG  151 (239)
                            ..++|++|+....  ...++.+.+.  ..  .+ ..+    .+.++++++.+++.+ ..++.+     +.||||
T Consensus       947 ~~~~~~~~igyv~Q~d~~~--~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~-~~~~~vg~~~~~~LSgG 1023 (1470)
T PLN03140        947 KQETFARISGYCEQNDIHS--PQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDN-LKDAIVGLPGVTGLSTE 1023 (1470)
T ss_pred             ChHHhhhheEEEccccccC--CCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChh-HhCCccCCCCCCCcCHH
Confidence                  2489999985422  2234444332  11  11 111    234788999999974 455654     589999


Q ss_pred             HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHH-HHhhhcCeEEEEeC-CeEEeeC
Q 026376          152 QKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEH-LISGSVEELWVVSE-GKATPFH  226 (239)
Q Consensus       152 qkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~  226 (239)
                      |||||+||++|+.+|++|+|||||+|||..+...+++.|++.   +.|||+++|+++ .+...||++++|++ |+++ +.
T Consensus      1024 erkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v-~~ 1102 (1470)
T PLN03140       1024 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI-YS 1102 (1470)
T ss_pred             HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEE-EE
Confidence            999999999999999999999999999999999888877653   679999999998 46778999999996 8886 67


Q ss_pred             CCh
Q 026376          227 GTF  229 (239)
Q Consensus       227 g~~  229 (239)
                      |+.
T Consensus      1103 G~~ 1105 (1470)
T PLN03140       1103 GPL 1105 (1470)
T ss_pred             CCc
Confidence            875

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.5e-39  Score=286.66  Aligned_cols=203  Identities=30%  Similarity=0.453  Sum_probs=159.0

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce--EEE-EEeeccCCC
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--RIA-VFSQHHVDG  104 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~--~~~-~~~q~~~~~  104 (239)
                      -|.+.+++..|+ ++.+|.+-++++..|..+||+|+||+|||||||+|+-      |.|......  ..+ +++-. ...
T Consensus        80 Di~~~~fdLa~G-~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~-~~~  151 (582)
T KOG0062|consen   80 DIHIDNFDLAYG-GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEAL-QSV  151 (582)
T ss_pred             ceeeeeeeeeec-chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHH-hhh
Confidence            488999999995 6789999999999999999999999999999999987      444321110  000 11000 000


Q ss_pred             CCCCCcHHHHHHHh---CCCCcHHHHHH-HHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 026376          105 LDLSSNPLLYMMRC---FPGVPEQKLRA-HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL  180 (239)
Q Consensus       105 ~~~~~~~~~~~~~~---~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~  180 (239)
                      +........++...   ......+++.. +|..+|++++...+|+.+||||+|.|++|||||..+|++||||||||+||.
T Consensus       152 l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv  231 (582)
T KOG0062|consen  152 LESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDV  231 (582)
T ss_pred             hhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchh
Confidence            11111111122111   11113344555 899999999888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHHhhc
Q 026376          181 DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQS  238 (239)
Q Consensus       181 ~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~~  238 (239)
                      .++.|+.+.|..++.|+|+||||..|+..+|+.|+.+++-++..|.|++++|.+..+.
T Consensus       232 ~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~k~E  289 (582)
T KOG0062|consen  232 VAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKTKPE  289 (582)
T ss_pred             HHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHhhHH
Confidence            9999999999999999999999999999999999999999998899999999876653

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.8e-38  Score=249.50  Aligned_cols=177  Identities=27%  Similarity=0.465  Sum_probs=140.7

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceE----------EEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR----------IAVF   97 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~----------~~~~   97 (239)
                      +++.+|++... +...+|.++||++.+||.+.|.||||||||||||+|+|+.+|++|+|++++...          .-|+
T Consensus         2 ~L~a~~L~~~R-~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yL   80 (209)
T COG4133           2 MLEAENLSCER-GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYL   80 (209)
T ss_pred             cchhhhhhhcc-CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHh
Confidence            57889999888 456799999999999999999999999999999999999999999999875421          1122


Q ss_pred             eeccCCCCCCCCcHHHHHH---HhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 026376           98 SQHHVDGLDLSSNPLLYMM---RCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP  174 (239)
Q Consensus        98 ~q~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEP  174 (239)
                      -.+  ..+-...+.++++.   ..+...+...+.++++.+|+.+ ..+.|+.+||-|||+||||||.++..++++|||||
T Consensus        81 GH~--~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g-~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP  157 (209)
T COG4133          81 GHQ--PGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAG-LEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEP  157 (209)
T ss_pred             hcc--ccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCccc-ccccchhhcchhHHHHHHHHHHHcCCCCceeecCc
Confidence            111  12222233444332   2222245678999999999975 67899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHh
Q 026376          175 SNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLIS  208 (239)
Q Consensus       175 t~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~  208 (239)
                      |++||.+++..+...+..   .++-||.+||+.-.+.
T Consensus       158 ~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~  194 (209)
T COG4133         158 FTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA  194 (209)
T ss_pred             ccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence            999999998887776653   4668999999976654

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=1.9e-36  Score=309.40  Aligned_cols=184  Identities=21%  Similarity=0.361  Sum_probs=146.3

Q ss_pred             CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCC
Q 026376           42 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPG  121 (239)
Q Consensus        42 ~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~  121 (239)
                      +.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+.  ..++|++|++..   +..+..+++.... .
T Consensus       673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~--~~i~yv~Q~~~l---~~~Tv~enI~~~~-~  746 (1560)
T PTZ00243        673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE--RSIAYVPQQAWI---MNATVRGNILFFD-E  746 (1560)
T ss_pred             ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC--CeEEEEeCCCcc---CCCcHHHHHHcCC-h
Confidence            468999999999999999999999999999999999999999999875  469999998753   2345555553221 1


Q ss_pred             CcHHHHHHHH---------Hhc--CCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 026376          122 VPEQKLRAHL---------GSF--GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL  190 (239)
Q Consensus       122 ~~~~~~~~~l---------~~~--~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l  190 (239)
                      .+.+++.+++         +.+  |+.. ..++++.+||||||||++|||||+.+|+++||||||++||+.....+++.+
T Consensus       747 ~~~~~~~~~~~~~~l~~~l~~l~~g~~t-~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~  825 (1560)
T PTZ00243        747 EDAARLADAVRVSQLEADLAQLGGGLET-EIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEEC  825 (1560)
T ss_pred             hhHHHHHHHHHHhhhHHHHHHhhccchH-HhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHH
Confidence            1222333333         333  4432 335678999999999999999999999999999999999999887776533


Q ss_pred             -h-h-cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          191 -V-L-FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       191 -~-~-~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                       . . .+.|+|++|||++.+. .||++++|++|++. +.|+++++.+
T Consensus       826 ~~~~~~~~TvIlvTH~~~~~~-~ad~ii~l~~G~i~-~~G~~~~l~~  870 (1560)
T PTZ00243        826 FLGALAGKTRVLATHQVHVVP-RADYVVALGDGRVE-FSGSSADFMR  870 (1560)
T ss_pred             HHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-EecCHHHHHh
Confidence             1 2 2579999999999986 69999999999996 7899988753

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=1.4e-36  Score=307.90  Aligned_cols=191  Identities=19%  Similarity=0.216  Sum_probs=150.9

Q ss_pred             CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCc----CCCceeEEecCc----------eEEEEEeeccCCCCCC
Q 026376           42 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL----QPSSGTVFRSAK----------VRIAVFSQHHVDGLDL  107 (239)
Q Consensus        42 ~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~----~p~~G~i~~~~~----------~~~~~~~q~~~~~~~~  107 (239)
                      +.+|+|+|+++++||+++|+||||||||||||+|+|+.    +|++|+|.+++.          ..++|++|+.....  
T Consensus        74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~--  151 (1394)
T TIGR00956        74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP--  151 (1394)
T ss_pred             ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC--
Confidence            45899999999999999999999999999999999986    579999998763          23899999853222  


Q ss_pred             CCcHHHHHH---Hh-CC-----CCcH----HH-HHHHHHhcCCCcccccC-----CCCCCChHHHHHHHHHHHhccCCCE
Q 026376          108 SSNPLLYMM---RC-FP-----GVPE----QK-LRAHLGSFGVTGNLALQ-----PMYTLSGGQKSRVAFAKITFKKPHI  168 (239)
Q Consensus       108 ~~~~~~~~~---~~-~~-----~~~~----~~-~~~~l~~~~l~~~~~~~-----~~~~LSgGqkqrv~laral~~~p~l  168 (239)
                      ..++.+.+.   .. .+     ....    ++ ++.+++.+|+.+ ..++     .++.|||||||||+||++|+.+|++
T Consensus       152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v  230 (1394)
T TIGR00956       152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSH-TRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI  230 (1394)
T ss_pred             CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCccc-ccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence            223333321   11 11     1111    12 345789999974 3333     4578999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCH-HHHhhhcCeEEEEeCCeEEeeCCChhHHHHHh
Q 026376          169 ILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDE-HLISGSVEELWVVSEGKATPFHGTFHDYKKML  236 (239)
Q Consensus       169 lllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~  236 (239)
                      ++|||||+|||..+...+++.|++.    +.|||+++|++ +.+.+++|++++|++|+++ +.|++++..+.+
T Consensus       231 lllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv-~~G~~~~~~~yF  302 (1394)
T TIGR00956       231 QCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQI-YFGPADKAKQYF  302 (1394)
T ss_pred             EEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEE-EECCHHHHHHHH
Confidence            9999999999999999888877653    56999999996 6888899999999999997 789988765544

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=8.9e-37  Score=309.06  Aligned_cols=193  Identities=22%  Similarity=0.267  Sum_probs=153.0

Q ss_pred             CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCC---ceeEEecCc--------eEEEEEeeccCCCCCCCCc
Q 026376           42 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS---SGTVFRSAK--------VRIAVFSQHHVDGLDLSSN  110 (239)
Q Consensus        42 ~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~~--------~~~~~~~q~~~~~~~~~~~  110 (239)
                      +.+|+|+|+.|++||+++|+||||||||||||+|+|.++|+   +|+|.+++.        ..++|++|+......  .+
T Consensus       178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~--lT  255 (1470)
T PLN03140        178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGV--MT  255 (1470)
T ss_pred             ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCc--Cc
Confidence            45899999999999999999999999999999999999998   999998763        358999998532222  23


Q ss_pred             HHHHHH---HhCC---------CCc-H---------------------------HHHHHHHHhcCCCccc----ccCCCC
Q 026376          111 PLLYMM---RCFP---------GVP-E---------------------------QKLRAHLGSFGVTGNL----ALQPMY  146 (239)
Q Consensus       111 ~~~~~~---~~~~---------~~~-~---------------------------~~~~~~l~~~~l~~~~----~~~~~~  146 (239)
                      +.+.+.   ....         ... .                           ..+..+++.+|+.+..    .+..++
T Consensus       256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r  335 (1470)
T PLN03140        256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR  335 (1470)
T ss_pred             HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence            322221   1100         000 0                           1235688899996421    245678


Q ss_pred             CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCH-HHHhhhcCeEEEEeCCe
Q 026376          147 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDE-HLISGSVEELWVVSEGK  221 (239)
Q Consensus       147 ~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~-~~~~~~~d~i~~l~~G~  221 (239)
                      .|||||||||+||++|+.+|++++|||||+|||..+...+++.|++.    +.|||+++|++ ..+..++|+|++|++|+
T Consensus       336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~  415 (1470)
T PLN03140        336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQ  415 (1470)
T ss_pred             CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCce
Confidence            99999999999999999999999999999999999999988877653    56999999996 57888999999999999


Q ss_pred             EEeeCCChhHHHHHhh
Q 026376          222 ATPFHGTFHDYKKMLQ  237 (239)
Q Consensus       222 i~~~~g~~~~~~~~~~  237 (239)
                      ++ +.|+.++..+..+
T Consensus       416 iv-y~G~~~~~~~yF~  430 (1470)
T PLN03140        416 IV-YQGPRDHILEFFE  430 (1470)
T ss_pred             EE-EeCCHHHHHHHHH
Confidence            97 7899888765543

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.3e-37  Score=268.67  Aligned_cols=203  Identities=26%  Similarity=0.379  Sum_probs=168.6

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV   96 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~   96 (239)
                      .+.+.+++|.|.+.+++|+++||++.+|+.++++||+|+||||++++|..++.+.+|.|..+++           ..||.
T Consensus       262 ~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~  341 (497)
T COG5265         262 AVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGI  341 (497)
T ss_pred             eEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCc
Confidence            4789999999987888999999999999999999999999999999999999999999998874           35999


Q ss_pred             EeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHhccCC
Q 026376           97 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFKKP  166 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqrv~laral~~~p  166 (239)
                      +||+...+   +.+...+.....+....+++..+++...+.+....          ...-.|||||||||+|||+++.+|
T Consensus       342 VPQDtvLF---NDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p  418 (497)
T COG5265         342 VPQDTVLF---NDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNP  418 (497)
T ss_pred             Ccccceeh---hhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCC
Confidence            99987532   23444444333344556667777666655432221          123469999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376          167 HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  235 (239)
Q Consensus       167 ~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  235 (239)
                      ++|+|||.||+||..+.+++...|++.  +.|-+++.|.+..+.. ||.|++|++|+|+ +.|+.+++.++
T Consensus       419 ~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~-adeiivl~~g~i~-erg~h~~ll~~  487 (497)
T COG5265         419 PILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIID-ADEIIVLDNGRIV-ERGTHEELLAA  487 (497)
T ss_pred             CEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccC-CceEEEeeCCEEE-ecCcHHHHHHc
Confidence            999999999999999999998888754  6799999999999975 9999999999997 68999988654

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=100.00  E-value=1.8e-37  Score=278.32  Aligned_cols=200  Identities=28%  Similarity=0.450  Sum_probs=159.0

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCC--
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL--  105 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~--  105 (239)
                      -+.++|+++.|. +..+++|+.|++.+|+.+||+|+|||||||+|++|+|-..|..-++.+      ..+.++.....  
T Consensus        75 dvk~~sls~s~~-g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~------y~ls~e~~ps~~~  147 (614)
T KOG0927|consen   75 DVKIESLSLSFH-GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDF------YLLSREIEPSEKQ  147 (614)
T ss_pred             cceeeeeeeccC-CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccch------hhhcccCCCchHH
Confidence            489999999995 567899999999999999999999999999999999999986554421      11111110000  


Q ss_pred             -----C-CCCcH---HHHHH-------------------H----hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHH
Q 026376          106 -----D-LSSNP---LLYMM-------------------R----CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQK  153 (239)
Q Consensus       106 -----~-~~~~~---~~~~~-------------------~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk  153 (239)
                           . .....   +.+..                   .    ......+.++..+|..+|+...+..+++..||||||
T Consensus       148 av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwr  227 (614)
T KOG0927|consen  148 AVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWR  227 (614)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHH
Confidence                 0 00000   00000                   0    001112345666788888877788899999999999


Q ss_pred             HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCC-EEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376          154 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQG-GILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       154 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                      .|++|||+|..+|++|||||||||||++++.++.+.|.++.. ++|+++|+.+++..+|++|+.+++++.+.|.|+|+.|
T Consensus       228 mR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy  307 (614)
T KOG0927|consen  228 MRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQY  307 (614)
T ss_pred             HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccceeeecCCHHHH
Confidence            999999999999999999999999999999999999999887 8999999999999999999999999988899999999


Q ss_pred             HH
Q 026376          233 KK  234 (239)
Q Consensus       233 ~~  234 (239)
                      ..
T Consensus       308 ~~  309 (614)
T KOG0927|consen  308 VK  309 (614)
T ss_pred             hh
Confidence            64

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=8.3e-37  Score=234.78  Aligned_cols=187  Identities=26%  Similarity=0.408  Sum_probs=149.4

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCC---ceeEEecCc---------eEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS---SGTVFRSAK---------VRIA   95 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~~---------~~~~   95 (239)
                      ++.++||+.+.++ ..+|-++||+|.+||++.|+||+|||||||+..+.|.+.++   +|+++.+++         ..+|
T Consensus         2 ~l~l~nvsl~l~g-~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~G   80 (213)
T COG4136           2 MLCLKNVSLRLPG-SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIG   80 (213)
T ss_pred             ceeeeeeeecCCC-ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhhee
Confidence            6899999999864 57899999999999999999999999999999999998875   799988764         4699


Q ss_pred             EEeeccCCC--CCCCCcHHHHHHHhCC-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376           96 VFSQHHVDG--LDLSSNPLLYMMRCFP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD  172 (239)
Q Consensus        96 ~~~q~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD  172 (239)
                      ++||++..+  +++..|....+....+ ...+..+..+|++.|+.+ ..++.+.+||||||.||++-|+|+.+|+.++||
T Consensus        81 iLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g-~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLD  159 (213)
T COG4136          81 ILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDG-AFHQDPATLSGGQRARVALLRALLAQPKALLLD  159 (213)
T ss_pred             eeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccch-hhhcChhhcCcchHHHHHHHHHHHhCcceeeeC
Confidence            999997532  3333332221111111 123455778999999986 456788999999999999999999999999999


Q ss_pred             CCCCCCCHHHHH----HHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEE
Q 026376          173 EPSNHLDLDAVE----ALIQGLVLFQGGILMVSHDEHLISGSVEELWVV  217 (239)
Q Consensus       173 EPt~~LD~~~~~----~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l  217 (239)
                      ||+|.||..-+.    ++...++..+..+|+||||.+.+. ...||+.+
T Consensus       160 EPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp-agsrVie~  207 (213)
T COG4136         160 EPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP-AGSRVIEM  207 (213)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC-CCCeeeee
Confidence            999999987554    555566666778999999999987 56777765

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.3e-37  Score=242.25  Aligned_cols=190  Identities=24%  Similarity=0.342  Sum_probs=153.1

Q ss_pred             eEEEEeeEEEcC----CC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------
Q 026376           28 IISFSDASFGYP----GG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------   91 (239)
Q Consensus        28 ~l~~~~l~~~y~----~~--~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------   91 (239)
                      .|.++|++|+|.    ++  -++++++||+++.||++++-||+|||||||||+|.|.+.|++|+|+....          
T Consensus         4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~   83 (235)
T COG4778           4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE   83 (235)
T ss_pred             eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence            588999998883    22  36899999999999999999999999999999999999999999976431          


Q ss_pred             ---------eEEEEEeeccCCCCCCCCcHHHH----HHHh-CC-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHH
Q 026376           92 ---------VRIAVFSQHHVDGLDLSSNPLLY----MMRC-FP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV  156 (239)
Q Consensus        92 ---------~~~~~~~q~~~~~~~~~~~~~~~----~~~~-~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv  156 (239)
                               ..+||+.|...  ..+....++.    +... .+ .....++..+|.++++.+.++..++.++||||||||
T Consensus        84 pr~vl~vRr~TiGyVSQFLR--viPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRV  161 (235)
T COG4778          84 PREVLEVRRTTIGYVSQFLR--VIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRV  161 (235)
T ss_pred             hHHHHHHHHhhhHHHHHHHH--hccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheeh
Confidence                     24788888531  1111111111    1111 11 123456788999999999899999999999999999


Q ss_pred             HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeC
Q 026376          157 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSE  219 (239)
Q Consensus       157 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~  219 (239)
                      -|||.++.+-+||||||||+.||..++..+++.+.+   .|.++|=|-||.+.-+.+|||++.+..
T Consensus       162 NIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~  227 (235)
T COG4778         162 NIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA  227 (235)
T ss_pred             hhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence            999999999999999999999999998888887764   356899999999999999999998754

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.8e-35  Score=292.24  Aligned_cols=203  Identities=24%  Similarity=0.421  Sum_probs=170.6

Q ss_pred             CCCCeEEEEeeEEEcCC--CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeecc
Q 026376           24 PGPPIISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHH  101 (239)
Q Consensus        24 ~~~~~l~~~~l~~~y~~--~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~  101 (239)
                      +.+..++++|.++.++.  ....|+||||+|++|+.+||+|+-|||||+||.+|.|..+..+|++.+++.  ++|++|.+
T Consensus       514 ~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs--iaYv~Q~p  591 (1381)
T KOG0054|consen  514 AGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS--VAYVPQQP  591 (1381)
T ss_pred             CCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe--EEEecccc
Confidence            34567999999999964  234899999999999999999999999999999999999999999999886  99999998


Q ss_pred             CCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 026376          102 VDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFKKPHIILL  171 (239)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqrv~laral~~~p~llll  171 (239)
                      +.   .+.+..+++.-. ...++++.+++++.+.+..++..          .+.-+||||||||++||||+.++++++||
T Consensus       592 WI---~ngTvreNILFG-~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLL  667 (1381)
T KOG0054|consen  592 WI---QNGTVRENILFG-SPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLL  667 (1381)
T ss_pred             Hh---hCCcHHHhhhcC-ccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEE
Confidence            53   345566665432 24578888899998888654432          23468999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHhh-c--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          172 DEPSNHLDLDAVEALIQGLVL-F--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       172 DEPt~~LD~~~~~~l~~~l~~-~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |.|+|++|.+.-..+.+..-. .  ++|+|+|||..+++. .||.|++|++|++. ..|+|+|+.+
T Consensus       668 DDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~-~ad~Iivl~~G~I~-~~Gty~el~~  731 (1381)
T KOG0054|consen  668 DDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLP-HADQIIVLKDGKIV-ESGTYEELLK  731 (1381)
T ss_pred             cCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhh-hCCEEEEecCCeEe-cccCHHHHHh
Confidence            999999999988877664432 2  579999999999987 59999999999997 6899999874

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=100.00  E-value=3.6e-36  Score=294.03  Aligned_cols=208  Identities=25%  Similarity=0.356  Sum_probs=172.8

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eEE
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VRI   94 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~~   94 (239)
                      ..+.++|+++.|+....+++++||.|++||+.|++|+|||||||++++|+|..+|++|+++..+.            ..+
T Consensus       563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~i  642 (885)
T KOG0059|consen  563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQL  642 (885)
T ss_pred             ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhc
Confidence            46899999999964333889999999999999999999999999999999999999999988542            249


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHhCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL  170 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~lll  170 (239)
                      ||+||.......++..+...+.....+..    .+.++..++.+++.+ ..+++++.+|||+|+|+++|.|++.+|++++
T Consensus       643 GyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~-~~~~~~~~ySgG~kRkLs~aialig~p~vi~  721 (885)
T KOG0059|consen  643 GYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGP-YANKQVRTYSGGNKRRLSFAIALIGDPSVIL  721 (885)
T ss_pred             ccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChh-hhccchhhCCCcchhhHHHHHHHhcCCCEEE
Confidence            99999864333344333333333222322    345788899999985 5678899999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHHh
Q 026376          171 LDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKML  236 (239)
Q Consensus       171 lDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~  236 (239)
                      |||||+|+||.+++.+.+.+.+.   +++||++||.+++++.+|||+.+|-+|++. .-|+++++..+.
T Consensus       722 LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~-ciGs~q~LKsrf  789 (885)
T KOG0059|consen  722 LDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLR-CIGSPQELKSRY  789 (885)
T ss_pred             ecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeE-EecChHHHHhhc
Confidence            99999999999999888877643   349999999999999999999999999997 569999887654

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=2.2e-35  Score=291.63  Aligned_cols=208  Identities=18%  Similarity=0.313  Sum_probs=168.6

Q ss_pred             CCCCCCeEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------
Q 026376           22 DRPGPPIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------   91 (239)
Q Consensus        22 ~~~~~~~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------   91 (239)
                      ..|....|+++|++.+|..+ ..+|+||||+|++||++||+|..|||||||+.+|..+..|.+|+|.+++.         
T Consensus      1132 ~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~d 1211 (1381)
T KOG0054|consen 1132 SWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHD 1211 (1381)
T ss_pred             CCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHH
Confidence            34445579999999999644 57999999999999999999999999999999999999999999999873         


Q ss_pred             --eEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccC----------CCCCCChHHHHHHHHH
Q 026376           92 --VRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ----------PMYTLSGGQKSRVAFA  159 (239)
Q Consensus        92 --~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgGqkqrv~la  159 (239)
                        .+++.+||+|..+   ..+...++- -+...+++++.++|+.+++.+.....          -..++|-||||.++||
T Consensus      1212 LRsrlsIIPQdPvLF---sGTvR~NLD-Pf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLA 1287 (1381)
T KOG0054|consen 1212 LRSRLSIIPQDPVLF---SGTVRFNLD-PFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLA 1287 (1381)
T ss_pred             HHhcCeeeCCCCcee---cCccccccC-cccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHH
Confidence              4799999998532   222222110 11234567888888888775433222          2367999999999999


Q ss_pred             HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376          160 KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  235 (239)
Q Consensus       160 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  235 (239)
                      |||+++++||+|||.||++|+++-..+.+.+++.  ++|||.|.|+++.+.+ ||||+||++|++++ .++|.++...
T Consensus      1288 RALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd-~DrVlVld~G~v~E-fdsP~~Ll~~ 1363 (1381)
T KOG0054|consen 1288 RALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMD-SDRVLVLDAGRVVE-FDSPAELLSD 1363 (1381)
T ss_pred             HHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhh-cCeEEEeeCCeEee-cCChHHHHhC
Confidence            9999999999999999999999988788888764  5799999999999986 99999999999985 4777776543

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=100.00  E-value=9.1e-35  Score=238.86  Aligned_cols=154  Identities=22%  Similarity=0.291  Sum_probs=123.7

Q ss_pred             eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCce---------eEEecC--------ceEEEEEeeccCCCCCCC
Q 026376           46 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG---------TVFRSA--------KVRIAVFSQHHVDGLDLS  108 (239)
Q Consensus        46 ~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G---------~i~~~~--------~~~~~~~~q~~~~~~~~~  108 (239)
                      ++++|++.+| +++|+||||||||||+++|+|+.+|..|         ++.+.+        ...+++++|++...+   
T Consensus        14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~---   89 (197)
T cd03278          14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRY---   89 (197)
T ss_pred             CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCce---
Confidence            6789999999 9999999999999999999999877643         343322        246899999874331   


Q ss_pred             CcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHH
Q 026376          109 SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF----KKPHIILLDEPSNHLDLDAVE  184 (239)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~----~~p~llllDEPt~~LD~~~~~  184 (239)
                                 .....+++.++++.   . ...++++.+||||||||++||++++    .+|+++||||||++||+....
T Consensus        90 -----------~~~~~~~~~~~l~~---~-~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~  154 (197)
T cd03278          90 -----------SIISQGDVSEIIEA---P-GKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVE  154 (197)
T ss_pred             -----------eEEehhhHHHHHhC---C-CccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHH
Confidence                       00123466677776   2 2456788999999999999999986    467999999999999999999


Q ss_pred             HHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeC
Q 026376          185 ALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSE  219 (239)
Q Consensus       185 ~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~  219 (239)
                      .+.+.+.+.  +.|||+||||++++. +||+++.+..
T Consensus       155 ~l~~~l~~~~~~~tiIiitH~~~~~~-~~d~v~~~~~  190 (197)
T cd03278         155 RFARLLKEFSKETQFIVITHRKGTME-AADRLYGVTM  190 (197)
T ss_pred             HHHHHHHHhccCCEEEEEECCHHHHh-hcceEEEEEe
Confidence            998888764  468999999999875 7999998864

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=3.1e-34  Score=270.39  Aligned_cols=205  Identities=21%  Similarity=0.324  Sum_probs=166.3

Q ss_pred             eEEEEeeEEEcCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC---CceeEEecCc--------e
Q 026376           28 IISFSDASFGYPGG----PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP---SSGTVFRSAK--------V   92 (239)
Q Consensus        28 ~l~~~~l~~~y~~~----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p---~~G~i~~~~~--------~   92 (239)
                      .+.+++++...++.    +.+|++||.++++||++||+||+||||||||++|+|....   .+|+|..+++        .
T Consensus        25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~  104 (613)
T KOG0061|consen   25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRK  104 (613)
T ss_pred             eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhh
Confidence            47888888887543    5799999999999999999999999999999999999874   7899999983        3


Q ss_pred             EEEEEeeccCCCCCCCCcHHHHHH--Hh--CCC-----CcHHHHHHHHHhcCCCcccccCCCC-----CCChHHHHHHHH
Q 026376           93 RIAVFSQHHVDGLDLSSNPLLYMM--RC--FPG-----VPEQKLRAHLGSFGVTGNLALQPMY-----TLSGGQKSRVAF  158 (239)
Q Consensus        93 ~~~~~~q~~~~~~~~~~~~~~~~~--~~--~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGqkqrv~l  158 (239)
                      ..+|+.|+....  ...++.+.+.  ..  .+.     ...++++++++.+|+. ..++..++     .+|||||+||+|
T Consensus       105 ~s~yV~QdD~l~--~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~-~~~~t~ig~~~~rgiSGGErkRvsi  181 (613)
T KOG0061|consen  105 ISGYVQQDDVLL--PTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE-KCADTLIGNPGIRGLSGGERKRVSI  181 (613)
T ss_pred             eeEEEccccccc--ccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh-hhccceecCCCCCccccchhhHHHH
Confidence            589999986432  2233333322  11  111     2346789999999997 45666665     599999999999


Q ss_pred             HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHH-HHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          159 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEH-LISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       159 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~-~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |.-|+.+|.||+|||||+|||..+...+++.|++   .|+|||++=|.+. .+.+..|++++|.+|+++ |.|++++..+
T Consensus       182 a~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~v-y~G~~~~~~~  260 (613)
T KOG0061|consen  182 ALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVV-YSGSPRELLE  260 (613)
T ss_pred             HHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEE-EecCHHHHHH
Confidence            9999999999999999999999998888777654   3779999999984 577789999999999996 8999887655


Q ss_pred             Hh
Q 026376          235 ML  236 (239)
Q Consensus       235 ~~  236 (239)
                      .+
T Consensus       261 ff  262 (613)
T KOG0061|consen  261 FF  262 (613)
T ss_pred             HH
Confidence            44

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=7e-33  Score=236.01  Aligned_cols=183  Identities=23%  Similarity=0.297  Sum_probs=129.4

Q ss_pred             eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHh-----c---C--cCCCceeEEecC--ceEEEEEeeccCCCCCCCCcH
Q 026376           44 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA-----G---E--LQPSSGTVFRSA--KVRIAVFSQHHVDGLDLSSNP  111 (239)
Q Consensus        44 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~-----G---l--~~p~~G~i~~~~--~~~~~~~~q~~~~~~~~~~~~  111 (239)
                      -|+|+|++|+.|.+++|+|++|||||||++.+.     .   .  ..|..++.....  -..+-++.|.+... +...++
T Consensus        10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~-~~rs~~   88 (261)
T cd03271          10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGR-TPRSNP   88 (261)
T ss_pred             cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCC-CCCCcH
Confidence            589999999999999999999999999998662     1   1  113333222111  11245555554211 111111


Q ss_pred             H------HHHHH--------------------------------------hCCC-CcHHHHHHHHHhcCCCcccccCCCC
Q 026376          112 L------LYMMR--------------------------------------CFPG-VPEQKLRAHLGSFGVTGNLALQPMY  146 (239)
Q Consensus       112 ~------~~~~~--------------------------------------~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~  146 (239)
                      .      ..+..                                      .+.. ....++.++++.+|+.....++++.
T Consensus        89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~~~~~  168 (261)
T cd03271          89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPAT  168 (261)
T ss_pred             HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhcCccc
Confidence            1      00000                                      0000 0123456688899997534578899


Q ss_pred             CCChHHHHHHHHHHHhccC---CCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEE---
Q 026376          147 TLSGGQKSRVAFAKITFKK---PHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVV---  217 (239)
Q Consensus       147 ~LSgGqkqrv~laral~~~---p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l---  217 (239)
                      +|||||+||++|||+|+.+   |+++||||||+|||+..+..+.+.+.+   .+.|||+||||++++. .||+++.|   
T Consensus       169 ~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~-~aD~ii~Lgp~  247 (261)
T cd03271         169 TLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK-CADWIIDLGPE  247 (261)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEecCC
Confidence            9999999999999999996   799999999999999999888777654   4679999999999986 69999999   


Q ss_pred             ---eCCeEEeeCCCh
Q 026376          218 ---SEGKATPFHGTF  229 (239)
Q Consensus       218 ---~~G~i~~~~g~~  229 (239)
                         ++|+++ +.|++
T Consensus       248 ~g~~~G~iv-~~Gt~  261 (261)
T cd03271         248 GGDGGGQVV-ASGTP  261 (261)
T ss_pred             cCCCCCEEE-EeCCC
Confidence               789987 56753

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=100.00  E-value=9.1e-33  Score=229.60  Aligned_cols=180  Identities=19%  Similarity=0.210  Sum_probs=129.1

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEe-CCCEEEEECCCCCcHHHHHHHHhcC-cCCCceeEEec----------CceEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGID-LDSRIAMVGPNGIGKSTILKLIAGE-LQPSSGTVFRS----------AKVRIA   95 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~-~Ge~~~iiG~NGsGKSTLl~~l~Gl-~~p~~G~i~~~----------~~~~~~   95 (239)
                      .|+++|+. .|.+.    .+++|+.. +|++++|+||||||||||+++|++. +.+..+.....          ....++
T Consensus         5 ~i~l~nf~-~y~~~----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~   79 (213)
T cd03279           5 KLELKNFG-PFREE----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVS   79 (213)
T ss_pred             EEEEECCc-CcCCc----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEE
Confidence            47889988 76432    55667654 5899999999999999999999964 33333333211          123578


Q ss_pred             EEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHH--HHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc---------
Q 026376           96 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA--HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK---------  164 (239)
Q Consensus        96 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~---------  164 (239)
                      +.+|..........         +...+.+.+.+  .+...++. ...++++.+||+||+||++|||||+.         
T Consensus        80 ~~f~~~~~~~~~~r---------~~gl~~~~~~~~~~l~~g~l~-~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~  149 (213)
T cd03279          80 FTFQLGGKKYRVER---------SRGLDYDQFTRIVLLPQGEFD-RFLARPVSTLSGGETFLASLSLALALSEVLQNRGG  149 (213)
T ss_pred             EEEEECCeEEEEEE---------ecCCCHHHHHHhhhhhhcchH-HHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccC
Confidence            88887522111100         01223333322  23333343 34567889999999999999999984         


Q ss_pred             -CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeE
Q 026376          165 -KPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKA  222 (239)
Q Consensus       165 -~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i  222 (239)
                       +|+++||||||++||+.+...+.+.+.+.   +.|||+||||++++..+||+++++++|.+
T Consensus       150 ~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~  211 (213)
T cd03279         150 ARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG  211 (213)
T ss_pred             CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence             67899999999999999998887766543   56999999999999999999999999864

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=100.00  E-value=2.1e-33  Score=217.14  Aligned_cols=122  Identities=36%  Similarity=0.560  Sum_probs=99.5

Q ss_pred             eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEEEeeccCCCCCCCCcHHH
Q 026376           45 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAVFSQHHVDGLDLSSNPLL  113 (239)
Q Consensus        45 l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~~~q~~~~~~~~~~~~~~  113 (239)
                      |+|+||+|++|++++|+|+||||||||+++|+|+.+|++|+|.+++.           ..++|++|++....  ..+...
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~tv~~   78 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFP--GLTVRE   78 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHT--TSBHHH
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccc--cccccc
Confidence            68999999999999999999999999999999999999999988763           35899999853211  122332


Q ss_pred             HHHHhCCCCcHHHHHHHHHhcCCCcccccCCC----CCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 026376          114 YMMRCFPGVPEQKLRAHLGSFGVTGNLALQPM----YTLSGGQKSRVAFAKITFKKPHIILLDEPSN  176 (239)
Q Consensus       114 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~LSgGqkqrv~laral~~~p~llllDEPt~  176 (239)
                      +       ....++.++++.+++.+ ..++.+    ..||+|||||++|||||+.+|++||||||||
T Consensus        79 ~-------~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~  137 (137)
T PF00005_consen   79 N-------ESDERIEEVLKKLGLED-LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN  137 (137)
T ss_dssp             H-------HHHHHHHHHHHHTTHGG-GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred             c-------ccccccccccccccccc-ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence            2       23456778888888753 233444    9999999999999999999999999999997

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=100.00  E-value=1.1e-31  Score=226.94  Aligned_cols=180  Identities=20%  Similarity=0.220  Sum_probs=113.1

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC----------------cCCCceeEEecCce
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE----------------LQPSSGTVFRSAKV   92 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl----------------~~p~~G~i~~~~~~   92 (239)
                      ++++|. ++|+ +..++++++     |++++|+||||||||||+++|+++                +.+.+|...  ...
T Consensus         4 i~~~nf-ksy~-~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~--~~~   74 (243)
T cd03272           4 VIIQGF-KSYK-DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSV--MSA   74 (243)
T ss_pred             EEEeCc-cCcc-cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCC--ceE
Confidence            556664 3563 445777776     789999999999999999999844                334343100  001


Q ss_pred             EEEEEeeccCCCCCCCCcH------HHHHH---HhCC-CCcHHHHHHHHHhcCCCc-------------------ccccC
Q 026376           93 RIAVFSQHHVDGLDLSSNP------LLYMM---RCFP-GVPEQKLRAHLGSFGVTG-------------------NLALQ  143 (239)
Q Consensus        93 ~~~~~~q~~~~~~~~~~~~------~~~~~---~~~~-~~~~~~~~~~l~~~~l~~-------------------~~~~~  143 (239)
                      .+.+++|++.....+....      +.+..   ..+. ....+++..++..+++..                   ...++
T Consensus        75 ~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~  154 (243)
T cd03272          75 YVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQ  154 (243)
T ss_pred             EEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccc
Confidence            2233333321100000000      00000   0000 012233334444444321                   12356


Q ss_pred             CCCCCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEE
Q 026376          144 PMYTLSGGQKSRVAFAKITF----KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVV  217 (239)
Q Consensus       144 ~~~~LSgGqkqrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l  217 (239)
                      ++.+||||||||++|||||+    .+|+++||||||++||+.++..+.+.+.+.  +.+||++||+.+ +..+||++++|
T Consensus       155 ~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~-~~~~~d~i~~l  233 (243)
T cd03272         155 EMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPE-LLEVADKFYGV  233 (243)
T ss_pred             cccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHhhCCEEEEE
Confidence            78999999999999999996    368999999999999999999998888765  457788888865 56799999988


Q ss_pred             e
Q 026376          218 S  218 (239)
Q Consensus       218 ~  218 (239)
                      .
T Consensus       234 ~  234 (243)
T cd03272         234 K  234 (243)
T ss_pred             E
Confidence            5

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.97  E-value=2.1e-31  Score=235.39  Aligned_cols=185  Identities=24%  Similarity=0.326  Sum_probs=143.6

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCC
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL  105 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~  105 (239)
                      ..+++..++++.|+ + .-|+-=.=+|..||+++++||||-||||+.++|+|.++|++|.   ....+++|-||..... 
T Consensus       340 ~~lv~y~~~~k~~g-~-F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~---~~~~~vSyKPQyI~~~-  413 (591)
T COG1245         340 DTLVEYPDLKKTYG-D-FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS---EEDLKVSYKPQYISPD-  413 (591)
T ss_pred             ceeeecchheeecC-c-eEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC---CccceEeecceeecCC-
Confidence            44567777777774 3 2344344467778999999999999999999999999999998   4566899999976443 


Q ss_pred             CCCCcHHHHHHHhCCC--CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHH
Q 026376          106 DLSSNPLLYMMRCFPG--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV  183 (239)
Q Consensus       106 ~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~  183 (239)
                       ...++...+....+.  .+..-..++++-+.+. .+.++++.+|||||.|||+||.||..+++++|||||+++||.+.+
T Consensus       414 -~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~-~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR  491 (591)
T COG1245         414 -YDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLE-DLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR  491 (591)
T ss_pred             -CCCcHHHHHHHhhhhhcccchhHHhhcCccchH-HHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence             334444444332221  1122335677888886 467899999999999999999999999999999999999999987


Q ss_pred             HHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEe
Q 026376          184 EALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVS  218 (239)
Q Consensus       184 ~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~  218 (239)
                      ..+.+.+++    .++|.++|.||+.++..++||+++++
T Consensus       492 ~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~  530 (591)
T COG1245         492 IIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE  530 (591)
T ss_pred             HHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence            655444443    35699999999999999999999985

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.97  E-value=4.4e-31  Score=243.63  Aligned_cols=188  Identities=26%  Similarity=0.340  Sum_probs=155.3

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCC
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL  105 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~  105 (239)
                      +..++++|++..-+++...++++||+|++||.+.|.||||||||||+|+|+|+.+.-+|+|..-....+-|+||.|+.. 
T Consensus       390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p-  468 (604)
T COG4178         390 DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLP-  468 (604)
T ss_pred             cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCC-
Confidence            4679999999999887889999999999999999999999999999999999999999999877666799999998532 


Q ss_pred             CCCCcHHHHHHHh--CCCCcHHHHHHHHHhcCCCccccc------CCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 026376          106 DLSSNPLLYMMRC--FPGVPEQKLRAHLGSFGVTGNLAL------QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH  177 (239)
Q Consensus       106 ~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~------~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~  177 (239)
                        ..+..+.+...  ....+.+++.++|.++|+.+ +.+      +--..||+|||||+++||.|+++|++++|||-|++
T Consensus       469 --~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~-L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsA  545 (604)
T COG4178         469 --QGTLREALCYPNAAPDFSDAELVAVLHKVGLGD-LAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSA  545 (604)
T ss_pred             --CccHHHHHhCCCCCCCCChHHHHHHHHHcCcHH-HHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhc
Confidence              23333333211  11256778899999999853 221      12357999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhh--cCCEEEEEecCHHHHhhhcCeEEEEe
Q 026376          178 LDLDAVEALIQGLVL--FQGGILMVSHDEHLISGSVEELWVVS  218 (239)
Q Consensus       178 LD~~~~~~l~~~l~~--~~~tii~vsHd~~~~~~~~d~i~~l~  218 (239)
                      ||+++...+.+.+++  .+.|||-|+|...... +.++.+.+.
T Consensus       546 LDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~-~h~~~l~l~  587 (604)
T COG4178         546 LDEETEDRLYQLLKEELPDATVISVGHRPTLWN-FHSRQLELL  587 (604)
T ss_pred             cChHHHHHHHHHHHhhCCCCEEEEeccchhhHH-HHhhheeec
Confidence            999999999999988  4679999999987765 566666554

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.97  E-value=1.3e-32  Score=216.62  Aligned_cols=196  Identities=26%  Similarity=0.363  Sum_probs=152.2

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce-----------EEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------RIAV   96 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------~~~~   96 (239)
                      ++.++||+..-     -|-.+|.++..||++-+||||||||||||-.++|+. |-+|+|.+.+..           .-+|
T Consensus         3 l~qln~v~~~t-----RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAY   76 (248)
T COG4138           3 LMQLNDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY   76 (248)
T ss_pred             eeeeccccccc-----cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHH
Confidence            57888887642     257889999999999999999999999999999986 568999988742           3567


Q ss_pred             EeeccCCCCCCCCcHHHHHHHhCCC-CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc-------CCCE
Q 026376           97 FSQHHVDGLDLSSNPLLYMMRCFPG-VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK-------KPHI  168 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~-------~p~l  168 (239)
                      +.|+....  +...++.++....+. .....+.++...+++.+ ...+.+.+|||||.|||-+|...++       ..++
T Consensus        77 LsQqq~p~--f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~D-KL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~L  153 (248)
T COG4138          77 LSQQQTPP--FAMPVWHYLTLHQPDKTRTELLNDVAGALALDD-KLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQL  153 (248)
T ss_pred             HhhccCCc--chhhhhhhhhhcCchHHHHHHHHHHHhhhcccc-hhhhhhhhcCcccceeeEEeEEEEEecCCCCcccee
Confidence            77764322  223344444332222 12345677788899975 4578899999999999999998874       4579


Q ss_pred             EEEeCCCCCCCHHHHHH---HHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          169 ILLDEPSNHLDLDAVEA---LIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       169 lllDEPt~~LD~~~~~~---l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      ||+|||.|+||......   ++..+...|.+|||++||++...+.||++|.++.|++. ..|..+++.
T Consensus       154 LllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~-~~G~~~eVl  220 (248)
T COG4138         154 LLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLL-ASGRREEVL  220 (248)
T ss_pred             EEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEE-eecchhhhc
Confidence            99999999999987654   45556666789999999999999999999999999997 578777653

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.97  E-value=7.6e-31  Score=223.20  Aligned_cols=163  Identities=23%  Similarity=0.236  Sum_probs=119.5

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhcCcCCCc-eeEEecC--------------ceEEEEEeeccCCC-------CCCCCcHH
Q 026376           55 DSRIAMVGPNGIGKSTILKLIAGELQPSS-GTVFRSA--------------KVRIAVFSQHHVDG-------LDLSSNPL  112 (239)
Q Consensus        55 Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~-G~i~~~~--------------~~~~~~~~q~~~~~-------~~~~~~~~  112 (239)
                      ..+++|+||||||||||+++|++++.+.. |++...+              ...+++++|++...       .....+..
T Consensus        25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~  104 (251)
T cd03273          25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT  104 (251)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence            45999999999999999999999998763 4554322              13688999985211       00011110


Q ss_pred             ----HHHH-Hh-C--CCCcHHHHHHHHHhcCCCc-------------------ccccCCCCCCChHHHHHHHHHHHhc--
Q 026376          113 ----LYMM-RC-F--PGVPEQKLRAHLGSFGVTG-------------------NLALQPMYTLSGGQKSRVAFAKITF--  163 (239)
Q Consensus       113 ----~~~~-~~-~--~~~~~~~~~~~l~~~~l~~-------------------~~~~~~~~~LSgGqkqrv~laral~--  163 (239)
                          .... .. .  .....+++.++|+.+++..                   ...++++.+||+|||||++|||||+  
T Consensus       105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~  184 (251)
T cd03273         105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL  184 (251)
T ss_pred             EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence                0000 00 0  1123467888999999851                   2335678999999999999999997  


Q ss_pred             --cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEe
Q 026376          164 --KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVS  218 (239)
Q Consensus       164 --~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~  218 (239)
                        .+|+++||||||++||+..+.++.+.+++.  +.+||++||+.+... .||+++-+.
T Consensus       185 ~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~-~~d~v~~~~  242 (251)
T cd03273         185 LFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFN-NANVLFRTR  242 (251)
T ss_pred             hccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCCEEEEEE
Confidence              578999999999999999999998888764  558999999966665 799998765

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.97  E-value=5.2e-31  Score=229.54  Aligned_cols=191  Identities=23%  Similarity=0.313  Sum_probs=148.2

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCC
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD  106 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~  106 (239)
                      .-|+++|+.|.|.....-+..||++|++||++-|+|.||||||||+++++|+++|++|+|.+++..         .+..+
T Consensus       321 ~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~p---------V~~e~  391 (546)
T COG4615         321 KTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP---------VSAEQ  391 (546)
T ss_pred             cceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCcc---------CCCCC
Confidence            359999999999754456789999999999999999999999999999999999999999998752         11111


Q ss_pred             CCC------cH------HHHHHHhCCCCcHHHHHHHHHhcCCCccc--cc--CCCCCCChHHHHHHHHHHHhccCCCEEE
Q 026376          107 LSS------NP------LLYMMRCFPGVPEQKLRAHLGSFGVTGNL--AL--QPMYTLSGGQKSRVAFAKITFKKPHIIL  170 (239)
Q Consensus       107 ~~~------~~------~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~--~~~~~LSgGqkqrv~laral~~~p~lll  170 (239)
                      ...      .+      +..+.......+.+.+..+|+++.+.+..  .+  -....||.|||+|+|+.-||+-+.+|++
T Consensus       392 ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv  471 (546)
T COG4615         392 LEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILV  471 (546)
T ss_pred             HHHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEE
Confidence            000      00      00011111124567888888888775321  11  1246799999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHH----HHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCC
Q 026376          171 LDEPSNHLDLDAVEALIQ----GLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHG  227 (239)
Q Consensus       171 lDEPt~~LD~~~~~~l~~----~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g  227 (239)
                      +||=.+.-||.-++++.+    .+++.|+||+.||||-.... +|||++.+++|++++..|
T Consensus       472 ~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~-~ADrll~~~~G~~~e~tg  531 (546)
T COG4615         472 LDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFI-HADRLLEMRNGQLSELTG  531 (546)
T ss_pred             eehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhh-hHHHHHHHhcCceeeccc
Confidence            999999999999887765    45778999999999976654 799999999999975443

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.97  E-value=5e-30  Score=232.50  Aligned_cols=195  Identities=22%  Similarity=0.356  Sum_probs=157.7

Q ss_pred             CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------e
Q 026376           25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------V   92 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~   92 (239)
                      +.+.++++|++..-     .++|+||++.+||++||.|-=|||+|-|+++|.|..++++|+|.++++            .
T Consensus       260 ~~~~l~v~~l~~~~-----~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~  334 (500)
T COG1129         260 GEPVLEVRNLSGGG-----KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA  334 (500)
T ss_pred             CCcEEEEecCCCCC-----ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHc
Confidence            46789999987532     479999999999999999999999999999999999999999999885            2


Q ss_pred             EEEEEeeccC-CCCCCCCcHHHHHH-----HhC-----C-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 026376           93 RIAVFSQHHV-DGLDLSSNPLLYMM-----RCF-----P-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK  160 (239)
Q Consensus        93 ~~~~~~q~~~-~~~~~~~~~~~~~~-----~~~-----~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lar  160 (239)
                      .++|++.+.. ..+.+..+...++.     ...     . ....+.++++.+.+++...-.+.++.+||||-||||.|||
T Consensus       335 Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlar  414 (500)
T COG1129         335 GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLAR  414 (500)
T ss_pred             CCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHH
Confidence            5899998753 23333333322221     111     0 1123456778888888665567899999999999999999


Q ss_pred             HhccCCCEEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEe
Q 026376          161 ITFKKPHIILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVSEGKATP  224 (239)
Q Consensus       161 al~~~p~llllDEPt~~LD~~~~~~l~~~l~---~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~  224 (239)
                      .|+.+|++|||||||.|+|..++.++.+.++   ..|.+||++|-++.++..+||||++|++|+++.
T Consensus       415 wL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~  481 (500)
T COG1129         415 WLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVG  481 (500)
T ss_pred             HHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEE
Confidence            9999999999999999999998887766554   457899999999999999999999999999974

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.97  E-value=2.5e-30  Score=213.60  Aligned_cols=157  Identities=23%  Similarity=0.309  Sum_probs=115.7

Q ss_pred             eeEEEeCCCEEEEECCCCCcHHHHHHHHh----cCcCCCceeEEec--------CceEEEEEeecc-CCCCCCCC--cHH
Q 026376           48 LNFGIDLDSRIAMVGPNGIGKSTILKLIA----GELQPSSGTVFRS--------AKVRIAVFSQHH-VDGLDLSS--NPL  112 (239)
Q Consensus        48 isl~i~~Ge~~~iiG~NGsGKSTLl~~l~----Gl~~p~~G~i~~~--------~~~~~~~~~q~~-~~~~~~~~--~~~  112 (239)
                      .++++.+| +++|+||||||||||+++|.    |...|++|.+...        ....+++++|++ ...+.+..  +.+
T Consensus        16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~   94 (204)
T cd03240          16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAIL   94 (204)
T ss_pred             eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHh
Confidence            34667777 99999999999999999994    9999988765311        124688888876 22221111  222


Q ss_pred             HHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHH------HHHHHHhccCCCEEEEeCCCCCCCHHHHH-H
Q 026376          113 LYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR------VAFAKITFKKPHIILLDEPSNHLDLDAVE-A  185 (239)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr------v~laral~~~p~llllDEPt~~LD~~~~~-~  185 (239)
                      .++.    .....++.+.+          ++++.+||+||+||      ++||||++.+|+++||||||++||+..+. .
T Consensus        95 ~~~~----~~~~~~~~~~~----------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~  160 (204)
T cd03240          95 ENVI----FCHQGESNWPL----------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEES  160 (204)
T ss_pred             hcee----eechHHHHHHH----------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHH
Confidence            2211    01122333332          56789999999996      78999999999999999999999999988 8


Q ss_pred             HHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCC
Q 026376          186 LIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEG  220 (239)
Q Consensus       186 l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G  220 (239)
                      +.+.+.+.    +.+||++||+++++. .||+++.|++.
T Consensus       161 l~~~l~~~~~~~~~~iiiitH~~~~~~-~~d~i~~l~~~  198 (204)
T cd03240         161 LAEIIEERKSQKNFQLIVITHDEELVD-AADHIYRVEKD  198 (204)
T ss_pred             HHHHHHHHHhccCCEEEEEEecHHHHh-hCCEEEEEeeC
Confidence            87777553    459999999999875 69999998653

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.97  E-value=1.5e-31  Score=222.20  Aligned_cols=179  Identities=15%  Similarity=0.203  Sum_probs=119.4

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCC
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLS  108 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~  108 (239)
                      |+++|+. .|+ +..++++++|     ++++|+||||||||||+++|+-..-.+....   ....+++++|.......++
T Consensus         6 l~l~nfk-~~~-~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~---~~~~i~~~~~~~~~~~~~~   75 (212)
T cd03274           6 LVLENFK-SYA-GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKM---RQKKLSDLIHNSAGHPNLD   75 (212)
T ss_pred             EEEECcc-cCC-CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHh---hhhhHHHHhcCCCCCCCCc
Confidence            6788876 784 5568898887     8999999999999999999983211110000   0123445554432111111


Q ss_pred             CcH-HHH--------HHHhCC-CCcHHH----HHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc----CCCEEE
Q 026376          109 SNP-LLY--------MMRCFP-GVPEQK----LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK----KPHIIL  170 (239)
Q Consensus       109 ~~~-~~~--------~~~~~~-~~~~~~----~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~----~p~lll  170 (239)
                      ... ...        ...... ......    ..++++.+++.+ ..++++..||+|||||++||+|++.    +|++++
T Consensus        76 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~-~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ili  154 (212)
T cd03274          76 SCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPK-KSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYV  154 (212)
T ss_pred             eEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeecccc-ccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEE
Confidence            000 000        000000 000111    245566777754 4567789999999999999999974    589999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeC
Q 026376          171 LDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSE  219 (239)
Q Consensus       171 lDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~  219 (239)
                      |||||++||+.++..+.+.+++.  +.++|++||+.+ +..+||++++|..
T Consensus       155 lDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~-~~~~~d~v~~~~~  204 (212)
T cd03274         155 MDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNN-MFELADRLVGIYK  204 (212)
T ss_pred             EcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHH-HHHhCCEEEEEEe
Confidence            99999999999999998888766  358999999964 5679999999863

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=8e-31  Score=231.07  Aligned_cols=199  Identities=30%  Similarity=0.476  Sum_probs=159.8

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC---cCCCceeEEecCceEEEEEeeccCCC
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE---LQPSSGTVFRSAKVRIAVFSQHHVDG  104 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl---~~p~~G~i~~~~~~~~~~~~q~~~~~  104 (239)
                      -|.++|.+.+-. ++.+|.|-||.|-.|..++++||||-||||||+.|+.-   ++|.         ..+-++.|+....
T Consensus       264 DIKiEnF~ISA~-Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpn---------IDvLlCEQEvvad  333 (807)
T KOG0066|consen  264 DIKIENFDISAQ-GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPN---------IDVLLCEQEVVAD  333 (807)
T ss_pred             cceeeeeeeecc-cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCC---------CceEeeeeeeeec
Confidence            488999998874 46789999999999999999999999999999999763   3332         2244555543211


Q ss_pred             CCCCC-cHH-----------------------------------HHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCC
Q 026376          105 LDLSS-NPL-----------------------------------LYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTL  148 (239)
Q Consensus       105 ~~~~~-~~~-----------------------------------~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L  148 (239)
                      -.... +++                                   ..+........+.+++.+|.-+|++..+.++|...+
T Consensus       334 ~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kF  413 (807)
T KOG0066|consen  334 STSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKF  413 (807)
T ss_pred             CcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCcccc
Confidence            11000 000                                   000000011235577889999999988889999999


Q ss_pred             ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCC
Q 026376          149 SGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGT  228 (239)
Q Consensus       149 SgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~  228 (239)
                      |||+|.||+|||||...|.+|.|||||||||.....|+-+.|..|.+|++|||||..|+..+|+.|+.|++.++..|.|+
T Consensus       414 SGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGN  493 (807)
T KOG0066|consen  414 SGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGN  493 (807)
T ss_pred             CCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHHhhhhhhhhhhhcch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999989999


Q ss_pred             hhHHHHHh
Q 026376          229 FHDYKKML  236 (239)
Q Consensus       229 ~~~~~~~~  236 (239)
                      |.-|..+.
T Consensus       494 Y~~FKKmY  501 (807)
T KOG0066|consen  494 YTLFKKMY  501 (807)
T ss_pred             HHHHHHHH
Confidence            98876554

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.96  E-value=1.3e-28  Score=239.83  Aligned_cols=107  Identities=25%  Similarity=0.345  Sum_probs=92.5

Q ss_pred             HHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEE
Q 026376          126 KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP---HIILLDEPSNHLDLDAVEALIQGLVL---FQGGILM  199 (239)
Q Consensus       126 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p---~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~  199 (239)
                      +..+.|+.+|+.....++++.+|||||+||++||++|+.+|   +++||||||+|||+..+..+++.|.+   .+.|||+
T Consensus       809 ~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIi  888 (943)
T PRK00349        809 RKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVV  888 (943)
T ss_pred             HHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence            34567888899643457889999999999999999999999   99999999999999999888777764   3679999


Q ss_pred             EecCHHHHhhhcCeEEEE------eCCeEEeeCCChhHHHH
Q 026376          200 VSHDEHLISGSVEELWVV------SEGKATPFHGTFHDYKK  234 (239)
Q Consensus       200 vsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~  234 (239)
                      |||+++++. .||+++.|      ++|+++ +.|+++++.+
T Consensus       889 itH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv-~~Gt~~el~~  927 (943)
T PRK00349        889 IEHNLDVIK-TADWIIDLGPEGGDGGGEIV-ATGTPEEVAK  927 (943)
T ss_pred             EecCHHHHH-hCCEEEEecCCcCCCCCEEE-EeCCHHHHHh
Confidence            999999986 79999999      689997 6899888754

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.96  E-value=1.9e-29  Score=204.06  Aligned_cols=204  Identities=20%  Similarity=0.305  Sum_probs=157.4

Q ss_pred             CeEEEEeeEEEcC---CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCC----ceeEEecC---------
Q 026376           27 PIISFSDASFGYP---GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS----SGTVFRSA---------   90 (239)
Q Consensus        27 ~~l~~~~l~~~y~---~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~----~G~i~~~~---------   90 (239)
                      +++.++|++..+.   |...+++++|++++.||+-+++|++|||||-..|+|+|..+-.    ..+..++.         
T Consensus         2 ~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr   81 (330)
T COG4170           2 PLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR   81 (330)
T ss_pred             CcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChH
Confidence            4678899988874   2346889999999999999999999999999999999987632    11111111         


Q ss_pred             ------ceEEEEEeeccCCCCCCCCcHHHHHHHhCC------------CCcHHHHHHHHHhcCCCcc--cccCCCCCCCh
Q 026376           91 ------KVRIAVFSQHHVDGLDLSSNPLLYMMRCFP------------GVPEQKLRAHLGSFGVTGN--LALQPMYTLSG  150 (239)
Q Consensus        91 ------~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~~~l~~~--~~~~~~~~LSg  150 (239)
                            ...++++||++...++.+...-..+....+            .....++.++|.++|+.+.  ....++.+|--
T Consensus        82 ~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTe  161 (330)
T COG4170          82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTE  161 (330)
T ss_pred             HhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhcc
Confidence                  024889999987666655433222211111            2345678899999999753  34457899999


Q ss_pred             HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeC
Q 026376          151 GQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFH  226 (239)
Q Consensus       151 Gqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~  226 (239)
                      ||-|+|+||.|++.+|++||.|||||.+|+.+..++++.|.+.    +.||+++|||+..+.++||++-+|.-|+-+ ..
T Consensus       162 GE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~-ES  240 (330)
T COG4170         162 GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTV-ES  240 (330)
T ss_pred             CcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccc-cc
Confidence            9999999999999999999999999999999999998888654    348999999999999999999999999865 34


Q ss_pred             CChhH
Q 026376          227 GTFHD  231 (239)
Q Consensus       227 g~~~~  231 (239)
                      ++.++
T Consensus       241 a~~e~  245 (330)
T COG4170         241 APSEE  245 (330)
T ss_pred             cchhH
Confidence            44443

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.96  E-value=9.2e-29  Score=203.36  Aligned_cols=161  Identities=22%  Similarity=0.250  Sum_probs=117.5

Q ss_pred             eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCc-----ee----EEecC--ceEEEEEeeccCCCCCCCCcHH
Q 026376           44 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS-----GT----VFRSA--KVRIAVFSQHHVDGLDLSSNPL  112 (239)
Q Consensus        44 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~-----G~----i~~~~--~~~~~~~~q~~~~~~~~~~~~~  112 (239)
                      .++++++++.+| +.+|+||||||||||+.+|........     |.    +...+  ...+.+.+++.....    +. 
T Consensus        11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~----~~-   84 (198)
T cd03276          11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA----NP-   84 (198)
T ss_pred             ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC----Cc-
Confidence            347788888887 889999999999999999975433321     21    00111  234666676532111    10 


Q ss_pred             HHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHh----ccCCCEEEEeCCCCCCCHHHHHHHHH
Q 026376          113 LYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT----FKKPHIILLDEPSNHLDLDAVEALIQ  188 (239)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral----~~~p~llllDEPt~~LD~~~~~~l~~  188 (239)
                            ........+.++++.   . ...++++.+||+|||||++||+|+    +.+|+++||||||++||+..+..+.+
T Consensus        85 ------~~~~~~~~~~~~l~~---~-~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~  154 (198)
T cd03276          85 ------LCVLSQDMARSFLTS---N-KAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTD  154 (198)
T ss_pred             ------CCHHHHHHHHHHhcc---c-cccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHH
Confidence                  111223566677776   2 345778999999999999999999    68999999999999999999888887


Q ss_pred             HHhhc-----C-CEEEEEecCHHHHhhhcCeEEEEeCCe
Q 026376          189 GLVLF-----Q-GGILMVSHDEHLISGSVEELWVVSEGK  221 (239)
Q Consensus       189 ~l~~~-----~-~tii~vsHd~~~~~~~~d~i~~l~~G~  221 (239)
                      .+.+.     + .+||++||+++.+..+ |+|-+|..++
T Consensus       155 ~l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~~~~~~  192 (198)
T cd03276         155 LLVKEAKKQPGRQFIFITPQDISGLASS-DDVKVFRMKD  192 (198)
T ss_pred             HHHHHHhcCCCcEEEEEECCcccccccc-cceeEEEecC
Confidence            76542     2 3799999999999875 9999998764

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.96  E-value=4.4e-29  Score=211.93  Aligned_cols=181  Identities=19%  Similarity=0.194  Sum_probs=121.4

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecC----------------ce
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA----------------KV   92 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~----------------~~   92 (239)
                      |+++|. +.|.+ ..     +|...++ +++|+||||||||||+++|++++.+..|++....                ..
T Consensus         4 i~l~nf-~~~~~-~~-----~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~   75 (247)
T cd03275           4 LELENF-KSYKG-RH-----VIGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSA   75 (247)
T ss_pred             EEEECc-cccCC-Ce-----eecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceE
Confidence            677776 56632 22     2333344 9999999999999999999999988777664221                12


Q ss_pred             EEEEEeeccCCC-CCC----CCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcc---------------------cccCCCC
Q 026376           93 RIAVFSQHHVDG-LDL----SSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN---------------------LALQPMY  146 (239)
Q Consensus        93 ~~~~~~q~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---------------------~~~~~~~  146 (239)
                      .+...++..... ..+    ......+. ..........+.++++.+++...                     ..++++.
T Consensus        76 ~v~~~f~~~~~~~~~~~~~~~~~~~~~~-ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~  154 (247)
T cd03275          76 YVTAVYEDDDGEEKTFRRIITGGSSSYR-INGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMD  154 (247)
T ss_pred             EEEEEEEcCCCcEEEEEEEEECCceEEE-ECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHH
Confidence            233333321100 000    00000000 00112345566788888887421                     1123458


Q ss_pred             CCChHHHHHHHHHHHhccC----CCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeC
Q 026376          147 TLSGGQKSRVAFAKITFKK----PHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSE  219 (239)
Q Consensus       147 ~LSgGqkqrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~  219 (239)
                      +||+|||||++||++++.+    |+++||||||++||+..+..+.+.+.+.   +.+||+|||+.+++ .+||++++|..
T Consensus       155 ~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~-~~~d~i~~~~~  233 (247)
T cd03275         155 NLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFF-SKADALVGVYR  233 (247)
T ss_pred             HcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHH-hhCCeEEEEEe
Confidence            9999999999999999864    8999999999999999999888877654   46999999998876 57999998864

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.96  E-value=2.8e-28  Score=246.90  Aligned_cols=104  Identities=24%  Similarity=0.334  Sum_probs=90.3

Q ss_pred             HHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc---cCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEec
Q 026376          129 AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF---KKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSH  202 (239)
Q Consensus       129 ~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~---~~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsH  202 (239)
                      ++|+.+|+.....++++.+|||||+||++||++|+   .+|++|||||||+|||+.++..+++.|.+   .+.|||+|||
T Consensus       791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsH  870 (1809)
T PRK00635        791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEH  870 (1809)
T ss_pred             HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence            57888999643257899999999999999999997   69999999999999999999988877654   4679999999


Q ss_pred             CHHHHhhhcCeEEEEe------CCeEEeeCCChhHHHH
Q 026376          203 DEHLISGSVEELWVVS------EGKATPFHGTFHDYKK  234 (239)
Q Consensus       203 d~~~~~~~~d~i~~l~------~G~i~~~~g~~~~~~~  234 (239)
                      +++++ .+||++++|.      +|+++ ..|+++++..
T Consensus       871 dl~~i-~~aDrVi~L~p~gg~~~G~iv-~~Gtpeel~~  906 (1809)
T PRK00635        871 NMHVV-KVADYVLELGPEGGNLGGYLL-ASCSPEELIH  906 (1809)
T ss_pred             CHHHH-HhCCEEEEEccCCCCCCCEEE-EeCCHHHHHh
Confidence            99999 7999999996      68886 6899988754

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.95  E-value=1.3e-27  Score=232.40  Aligned_cols=105  Identities=25%  Similarity=0.359  Sum_probs=90.3

Q ss_pred             HHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc---CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEE
Q 026376          126 KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK---KPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILM  199 (239)
Q Consensus       126 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~  199 (239)
                      +..++++.+|+.....++++.+|||||+||++||++|+.   +|+++||||||+|||+..+..+++.+.++   +.|||+
T Consensus       807 ~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIv  886 (924)
T TIGR00630       807 RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVV  886 (924)
T ss_pred             HHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence            345677888986434578899999999999999999997   59999999999999999998888777643   679999


Q ss_pred             EecCHHHHhhhcCeEEEE------eCCeEEeeCCChhHH
Q 026376          200 VSHDEHLISGSVEELWVV------SEGKATPFHGTFHDY  232 (239)
Q Consensus       200 vsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~  232 (239)
                      +||+++++. .||++++|      ++|+++ +.|+++++
T Consensus       887 i~H~~~~i~-~aD~ii~Lgp~~G~~gG~iv-~~G~~~~l  923 (924)
T TIGR00630       887 IEHNLDVIK-TADYIIDLGPEGGDGGGTIV-ASGTPEEV  923 (924)
T ss_pred             EeCCHHHHH-hCCEEEEecCCccCCCCEEE-EeCCHHHh
Confidence            999999986 69999999      789997 67988764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=99.95  E-value=1.9e-27  Score=215.32  Aligned_cols=193  Identities=21%  Similarity=0.325  Sum_probs=153.5

Q ss_pred             CCCCeEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---eEEEEEee
Q 026376           24 PGPPIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---VRIAVFSQ   99 (239)
Q Consensus        24 ~~~~~l~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---~~~~~~~q   99 (239)
                      +++.++++++|++.-|. +..+++|+||+|..|+-+.|.||||||||+|||+|+|+.+..+|++..-.+   ..+-|+||
T Consensus       429 ~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQ  508 (659)
T KOG0060|consen  429 PADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQ  508 (659)
T ss_pred             cccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecC
Confidence            44568999999999987 566789999999999999999999999999999999999999999976443   34899999


Q ss_pred             ccCCCCCCCCcHHHHHH-------HhCCCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHh
Q 026376          100 HHVDGLDLSSNPLLYMM-------RCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKIT  162 (239)
Q Consensus       100 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqrv~laral  162 (239)
                      .|+...  . +..+.+.       ......+.+++.+.|+.+++.+-.          ...-...||+||+||+++||.+
T Consensus       509 rPYmt~--G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLf  585 (659)
T KOG0060|consen  509 RPYMTL--G-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLF  585 (659)
T ss_pred             CCCccc--c-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHH
Confidence            985321  1 2111110       011124456777777777664211          1112467999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCC
Q 026376          163 FKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEG  220 (239)
Q Consensus       163 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G  220 (239)
                      .++|++-+|||-||++|.+....+.+.+++.+.|.|-|+|...... +-|.++-|+.+
T Consensus       586 y~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~k-fHd~~L~~~g~  642 (659)
T KOG0060|consen  586 YHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWK-FHDYVLRMDGR  642 (659)
T ss_pred             hcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHh-hhhEEEEecCC
Confidence            9999999999999999999999999999999999999999998765 77888888754

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=99.95  E-value=3.7e-27  Score=190.02  Aligned_cols=203  Identities=23%  Similarity=0.275  Sum_probs=154.6

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce-----------EE
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------RI   94 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------~~   94 (239)
                      +..+++.++.|+|+...+++-|+|++++.|....++|.||||||||||+|+|-.-.-.|.|...++.           ..
T Consensus        11 ~~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl   90 (291)
T KOG2355|consen   11 DFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDL   90 (291)
T ss_pred             cceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCce
Confidence            4569999999999877789999999999999999999999999999999999876666888765531           13


Q ss_pred             EEEeeccCC-----C-CCCCCc-HHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 026376           95 AVFSQHHVD-----G-LDLSSN-PLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH  167 (239)
Q Consensus        95 ~~~~q~~~~-----~-~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~  167 (239)
                      .|+--+-..     . ..+... ....+.......+.++-+.+++.+.+.  + .-+.+.+|-|||+||.|++-|++.-+
T Consensus        91 ~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDId--l-~WRmHkvSDGqrRRVQicMGLL~Pfk  167 (291)
T KOG2355|consen   91 SYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDID--L-RWRMHKVSDGQRRRVQICMGLLKPFK  167 (291)
T ss_pred             eEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheecc--c-eEEEeeccccchhhhHHHHhccccee
Confidence            333221100     0 000000 011121122233456667777777774  2 23578999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376          168 IILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       168 llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                      +|||||-|-.||.-++..+++.+++.    +.||+.+||-.+-++.+.++++.++.|+++ ..-+++.+
T Consensus       168 VLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~-~~l~~~~i  235 (291)
T KOG2355|consen  168 VLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLV-DNLKYQKI  235 (291)
T ss_pred             EEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeee-eccccchh
Confidence            99999999999999999999999753    569999999999999999999999999996 33344433

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.95  E-value=4.8e-27  Score=209.94  Aligned_cols=209  Identities=22%  Similarity=0.348  Sum_probs=166.3

Q ss_pred             CCCCCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce---------
Q 026376           22 DRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV---------   92 (239)
Q Consensus        22 ~~~~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~---------   92 (239)
                      ..++++.|++++++..-..+...+++|||++..||++||.|-.|-|-+.|+.+|+|+.+|.+|+|.+++..         
T Consensus       251 ~~pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~  330 (501)
T COG3845         251 STPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRE  330 (501)
T ss_pred             CCCCCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHH
Confidence            34567899999999986444567899999999999999999999999999999999999999999988742         


Q ss_pred             ----EEEEEeeccC-CCCCCCCcHHHHHHH-hCC-------C-Cc----HHHHHHHHHhcCCCcccccCCCCCCChHHHH
Q 026376           93 ----RIAVFSQHHV-DGLDLSSNPLLYMMR-CFP-------G-VP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKS  154 (239)
Q Consensus        93 ----~~~~~~q~~~-~~~~~~~~~~~~~~~-~~~-------~-~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq  154 (239)
                          .++|+|.+.. ..+.+..+..+++.. .+.       . .+    ...+.++++.|++...-...++.+||||.+|
T Consensus       331 ~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQ  410 (501)
T COG3845         331 RRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQ  410 (501)
T ss_pred             HHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCccee
Confidence                4889998752 223333333333321 111       0 11    2345678888888644445678999999999


Q ss_pred             HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhH
Q 026376          155 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD  231 (239)
Q Consensus       155 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~  231 (239)
                      |+-+||-|..+|++|++.+||.|||..+.+.+.+.+.+   .|.+|+++|-|++++..+||||.+|.+|+++ -..++++
T Consensus       411 K~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~-~~~~~~~  489 (501)
T COG3845         411 KLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIV-GIVPPEE  489 (501)
T ss_pred             hhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCcee-ccccccc
Confidence            99999999999999999999999999999988877653   4678999999999999999999999999996 3444443

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.94  E-value=7.7e-27  Score=227.54  Aligned_cols=202  Identities=23%  Similarity=0.319  Sum_probs=148.6

Q ss_pred             eEEEEeeEEEcC---CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC--CCceeEEecCc--------eEE
Q 026376           28 IISFSDASFGYP---GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ--PSSGTVFRSAK--------VRI   94 (239)
Q Consensus        28 ~l~~~~l~~~y~---~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~~--------~~~   94 (239)
                      +....|+.+.-+   +.+.+|+||+=-++||-.+||+|+|||||||||++|+|-..  ..+|.|.++|.        +.+
T Consensus       787 V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~  866 (1391)
T KOG0065|consen  787 VFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVS  866 (1391)
T ss_pred             eEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhcccc
Confidence            445566655442   34579999999999999999999999999999999999643  23577777764        358


Q ss_pred             EEEeeccCCCCCCCCcHHHHHH---HhCCCCc----HHHHHHHHHhcCCCccccc----CCCCCCChHHHHHHHHHHHhc
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMM---RCFPGVP----EQKLRAHLGSFGVTGNLAL----QPMYTLSGGQKSRVAFAKITF  163 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~l~~~~l~~~~~~----~~~~~LSgGqkqrv~laral~  163 (239)
                      ||+.|+......++..+-..+.   +.....+    .+.++++++.+++.+ ..+    .+.+.||..||+|+.||--|+
T Consensus       867 GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~-~~daiVG~~G~GLs~eQRKrLTIgVELv  945 (1391)
T KOG0065|consen  867 GYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKE-YADALVGLPGSGLSTEQRKRLTIGVELV  945 (1391)
T ss_pred             ceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchh-hhhhhccCCCCCCCHHHhceeeEEEEEe
Confidence            9999986432222222211111   1111111    256788999999863 333    344569999999999999999


Q ss_pred             cCC-CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHH-HhhhcCeEEEEeCCeEEeeCCChh
Q 026376          164 KKP-HIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHL-ISGSVEELWVVSEGKATPFHGTFH  230 (239)
Q Consensus       164 ~~p-~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~-~~~~~d~i~~l~~G~i~~~~g~~~  230 (239)
                      .+| .||+|||||||||.++...+++.+++   .|.||+.+-|++.. +.+..|++++|+.|.-..|.|+..
T Consensus       946 A~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG 1017 (1391)
T KOG0065|consen  946 ANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLG 1017 (1391)
T ss_pred             cCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcc
Confidence            999 99999999999999998877776654   47899999999853 556789999998765444777654

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.94  E-value=2.7e-26  Score=188.92  Aligned_cols=140  Identities=19%  Similarity=0.215  Sum_probs=104.3

Q ss_pred             eeeeeEEEeCCC-EEEEECCCCCcHHHHHHHHh--------cCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHH
Q 026376           45 FKNLNFGIDLDS-RIAMVGPNGIGKSTILKLIA--------GELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYM  115 (239)
Q Consensus        45 l~~isl~i~~Ge-~~~iiG~NGsGKSTLl~~l~--------Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~  115 (239)
                      +.++||++.+|+ +++|+||||||||||+|+|+        |...|....+      .++|+.|..              
T Consensus        17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~------~~~~~~~~~--------------   76 (200)
T cd03280          17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS------SLPVFENIF--------------   76 (200)
T ss_pred             eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc------cCcCccEEE--------------
Confidence            457899999996 79999999999999999998        5444432111      122222221              


Q ss_pred             HHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHH----HHHh
Q 026376          116 MRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALI----QGLV  191 (239)
Q Consensus       116 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~----~~l~  191 (239)
                                      ..++..+ ......+++|+||||++.+++++ .+|+++|+||||+++|+.....+.    +.+.
T Consensus        77 ----------------~~lg~~~-~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~  138 (200)
T cd03280          77 ----------------ADIGDEQ-SIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELL  138 (200)
T ss_pred             ----------------EecCchh-hhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHH
Confidence                            1122221 22345689999999999999884 899999999999999999876653    3444


Q ss_pred             hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376          192 LFQGGILMVSHDEHLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       192 ~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~  223 (239)
                      +.+.++|++||+.+ +..+||+++.|++|++.
T Consensus       139 ~~~~~vi~~tH~~~-l~~~~d~~~~l~~g~l~  169 (200)
T cd03280         139 ERGALVIATTHYGE-LKAYAYKREGVENASME  169 (200)
T ss_pred             hcCCEEEEECCHHH-HHHHHhcCCCeEEEEEE
Confidence            45679999999955 55789999999999985

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.93  E-value=9.3e-26  Score=199.77  Aligned_cols=181  Identities=23%  Similarity=0.270  Sum_probs=125.3

Q ss_pred             eeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEec-----------------------
Q 026376           33 DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS-----------------------   89 (239)
Q Consensus        33 ~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~-----------------------   89 (239)
                      ++..+|+.+...|..+- ...+|.++||+|+||-||||-+|+|+|.+.|.=|+..-.                       
T Consensus        79 e~vHRYg~NgFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~  157 (591)
T COG1245          79 EVVHRYGVNGFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLY  157 (591)
T ss_pred             cceeeccCCceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHH
Confidence            45667854333333332 457899999999999999999999999999987764210                       


Q ss_pred             -CceEEEEEeeccCC-CCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 026376           90 -AKVRIAVFSQHHVD-GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH  167 (239)
Q Consensus        90 -~~~~~~~~~q~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~  167 (239)
                       +..++..-+|-... .-.+..+.-..+ ..  ........++.+++++. ...++.+++|||||.||+|||.|++++++
T Consensus       158 ~g~~r~v~K~QYVd~iPk~~KG~v~elL-k~--~de~g~~devve~l~L~-nvl~r~v~~LSGGELQr~aIaa~l~rdAD  233 (591)
T COG1245         158 EGELRAVHKPQYVDLIPKVVKGKVGELL-KK--VDERGKFDEVVERLGLE-NVLDRDVSELSGGELQRVAIAAALLRDAD  233 (591)
T ss_pred             cCCcceecchHHHHHHHHHhcchHHHHH-Hh--hhhcCcHHHHHHHhcch-hhhhhhhhhcCchHHHHHHHHHHHhccCC
Confidence             00111111111000 000001111100 00  00123466788889996 46789999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHhhhcCeEEEEe
Q 026376          168 IILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVS  218 (239)
Q Consensus       168 llllDEPt~~LD~~~~~~l~~~l~---~~~~tii~vsHd~~~~~~~~d~i~~l~  218 (239)
                      ++++|||||.||...+....+.++   +-+++||+|.||+..+..++|-|.++-
T Consensus       234 vY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y  287 (591)
T COG1245         234 VYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY  287 (591)
T ss_pred             EEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence            999999999999988766555444   336799999999999999999998874

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.93  E-value=2.5e-25  Score=184.94  Aligned_cols=169  Identities=17%  Similarity=0.153  Sum_probs=106.2

Q ss_pred             eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCcee----------EEecCc-eEEEEEeeccCCCCCCC-----
Q 026376           45 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT----------VFRSAK-VRIAVFSQHHVDGLDLS-----  108 (239)
Q Consensus        45 l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~----------i~~~~~-~~~~~~~q~~~~~~~~~-----  108 (239)
                      ++++.+++.+| +.+|+|+|||||||||.+|+-.+-.....          +..... ..+-..++.......+.     
T Consensus        14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~n~~~~   92 (213)
T cd03277          14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPGNIQVDNLCQF   92 (213)
T ss_pred             cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCCccccCCceEE
Confidence            46667777665 88999999999999999987665322211          111111 12222222211111110     


Q ss_pred             --CcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHh----ccCCCEEEEeCCCCCCCHHH
Q 026376          109 --SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT----FKKPHIILLDEPSNHLDLDA  182 (239)
Q Consensus       109 --~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral----~~~p~llllDEPt~~LD~~~  182 (239)
                        ..-...+.    ....   .+.+..+.-.....+..+.+||+|||||+.+|+++    +.+|+++|+||||++||+..
T Consensus        93 ~~q~~~~~~~----~~~~---~e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~  165 (213)
T cd03277          93 LPQDRVGEFA----KLSP---IELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTN  165 (213)
T ss_pred             EchHHHHHHH----hCCh---HhHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHH
Confidence              00000110    1111   12333333322334567889999999998877554    58999999999999999999


Q ss_pred             HHHHHHHHhhc----C-CEEEEEecCHHHHhhhcC--eEEEEeCCe
Q 026376          183 VEALIQGLVLF----Q-GGILMVSHDEHLISGSVE--ELWVVSEGK  221 (239)
Q Consensus       183 ~~~l~~~l~~~----~-~tii~vsHd~~~~~~~~d--~i~~l~~G~  221 (239)
                      ...+.+.+.+.    + .++|++|||+......||  ++++|.+|+
T Consensus       166 ~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~  211 (213)
T cd03277         166 ERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP  211 (213)
T ss_pred             HHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence            99888777543    3 379999999988777776  678888886

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=99.93  E-value=2.1e-25  Score=200.33  Aligned_cols=185  Identities=23%  Similarity=0.327  Sum_probs=148.5

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCC-
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD-  106 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~-  106 (239)
                      -|.++|+-.--|.+..++..++|+|++|-.+.|+||||||||+|+|+|.|+.|...|....-...++.|+||.|+.... 
T Consensus       481 gI~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gt  560 (728)
T KOG0064|consen  481 GIILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGT  560 (728)
T ss_pred             ceEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCc
Confidence            3788999888877778889999999999999999999999999999999999999999887777789999999853211 


Q ss_pred             ------CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCC---------CCCCChHHHHHHHHHHHhccCCCEEEE
Q 026376          107 ------LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQP---------MYTLSGGQKSRVAFAKITFKKPHIILL  171 (239)
Q Consensus       107 ------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~~LSgGqkqrv~laral~~~p~llll  171 (239)
                            ...+ .+.+..  .+..+++.+.+|..+.++. ...+-         -..||||||||+++||.+.++|+.-+|
T Consensus       561 lRDQIIYPdS-~e~~~~--kg~~d~dL~~iL~~v~L~~-i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalL  636 (728)
T KOG0064|consen  561 LRDQIIYPDS-SEQMKR--KGYTDQDLEAILDIVHLEH-ILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALL  636 (728)
T ss_pred             ccceeecCCc-HHHHHh--cCCCHHHHHHHHHHhhHHH-HHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhh
Confidence                  1111 122221  2345666777777666542 22221         147999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEE
Q 026376          172 DEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVV  217 (239)
Q Consensus       172 DEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l  217 (239)
                      ||-||++.++....+.+..+..+.+.|-|||.+.... +-++++..
T Consensus       637 DEcTsAvsidvE~~i~~~ak~~gi~llsithrpslwk-~h~~ll~~  681 (728)
T KOG0064|consen  637 DECTSAVSIDVEGKIFQAAKDAGISLLSITHRPSLWK-YHTHLLEF  681 (728)
T ss_pred             hhhhcccccchHHHHHHHHHhcCceEEEeecCccHHH-HHHHHHhc
Confidence            9999999999999999999999999999999999876 45555555

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.92  E-value=1.1e-24  Score=191.09  Aligned_cols=178  Identities=24%  Similarity=0.322  Sum_probs=139.0

Q ss_pred             ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC--------cCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHH
Q 026376           43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE--------LQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLY  114 (239)
Q Consensus        43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl--------~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~  114 (239)
                      .+++|+||++++|++++|+|+|||||||||++|+|.        ++|++|.|..-....-+.+|-...+.+. ..+.+..
T Consensus       397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~-~~tileh  475 (593)
T COG2401         397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFG-EVTILEH  475 (593)
T ss_pred             eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccC-chhHHHH
Confidence            479999999999999999999999999999999995        6789998876444323344443322222 2233444


Q ss_pred             HHHhCCCCcHHHHHHHHHhcCCCccc-ccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHh--
Q 026376          115 MMRCFPGVPEQKLRAHLGSFGVTGNL-ALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV--  191 (239)
Q Consensus       115 ~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~--  191 (239)
                      +...  .-+...+.++|.+.|+++.. ..++.++||.|||.|+.||++++..|.+++.||-.|+||+.+...+.+.+.  
T Consensus       476 l~s~--tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkisel  553 (593)
T COG2401         476 LRSK--TGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISEL  553 (593)
T ss_pred             Hhhc--cCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHH
Confidence            3322  12345577899999997643 345679999999999999999999999999999999999999887766554  


Q ss_pred             --hcCCEEEEEecCHHHHhhh-cCeEEEEeCCeEE
Q 026376          192 --LFQGGILMVSHDEHLISGS-VEELWVVSEGKAT  223 (239)
Q Consensus       192 --~~~~tii~vsHd~~~~~~~-~d~i~~l~~G~i~  223 (239)
                        +.+.|++++||+.++..++ -|+++.+.-|++.
T Consensus       554 aRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~  588 (593)
T COG2401         554 AREAGITLIVVTHRPEVGNALRPDTLILVGYGKVP  588 (593)
T ss_pred             HHHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence              3567999999999999998 6999888877764

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.91  E-value=2.4e-23  Score=168.38  Aligned_cols=71  Identities=24%  Similarity=0.267  Sum_probs=63.2

Q ss_pred             CChHHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeC
Q 026376          148 LSGGQKSRVAFAKITF----KKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSE  219 (239)
Q Consensus       148 LSgGqkqrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~  219 (239)
                      ||+||+||++|||+++    .+|+++++|||+++||+.....+.+.+.+.   +.++|++||+.+.+. .+|+++.+..
T Consensus        95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~-~adrvi~i~~  172 (178)
T cd03239          95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFE-NADKLIGVLF  172 (178)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh-hCCeEEEEEE
Confidence            9999999999999996    699999999999999999988887777543   468999999998875 7999999865

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.90  E-value=1.2e-23  Score=167.62  Aligned_cols=137  Identities=25%  Similarity=0.307  Sum_probs=98.1

Q ss_pred             eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHH
Q 026376           46 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQ  125 (239)
Q Consensus        46 ~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (239)
                      ...++.+.++.+++|+|||||||||+++.+....-..+|.+......+.++         .....            ...
T Consensus        12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~---------~~~~~------------~~~   70 (162)
T cd03227          12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGC---------IVAAV------------SAE   70 (162)
T ss_pred             eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCC---------cceee------------EEE
Confidence            445566666679999999999999999998877666655544311100010         00000            000


Q ss_pred             HHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc----CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEE
Q 026376          126 KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK----KPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGIL  198 (239)
Q Consensus       126 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii  198 (239)
                       .        +      ....+||+||+||++||++|+.    +|+++|+|||++++|+.....+.+.+.+.   +.++|
T Consensus        71 -~--------i------~~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vi  135 (162)
T cd03227          71 -L--------I------FTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVI  135 (162)
T ss_pred             -E--------e------hheeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence             0        0      0112499999999999999986    78999999999999999888777666543   46999


Q ss_pred             EEecCHHHHhhhcCeEEEEeC
Q 026376          199 MVSHDEHLISGSVEELWVVSE  219 (239)
Q Consensus       199 ~vsHd~~~~~~~~d~i~~l~~  219 (239)
                      ++||+.+... .+|+++.|..
T Consensus       136 i~TH~~~~~~-~~d~~~~l~~  155 (162)
T cd03227         136 VITHLPELAE-LADKLIHIKK  155 (162)
T ss_pred             EEcCCHHHHH-hhhhEEEEEE
Confidence            9999999986 5899999864

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.89  E-value=2.2e-22  Score=173.51  Aligned_cols=75  Identities=17%  Similarity=0.241  Sum_probs=65.6

Q ss_pred             CCCChHHHHHHHHHHHhcc----CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeC
Q 026376          146 YTLSGGQKSRVAFAKITFK----KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSE  219 (239)
Q Consensus       146 ~~LSgGqkqrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~  219 (239)
                      ..|||||+||++||++++.    +|+++|+||||++||+.....+.+.+.+.  +.|+|++||++... .+||+++.|.+
T Consensus       169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~-~~~d~~~~l~~  247 (276)
T cd03241         169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVA-AMADNHFLVEK  247 (276)
T ss_pred             hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHH-HhcCcEEEEEE
Confidence            3599999999999987653    99999999999999999999998888765  45899999999865 68999999987


Q ss_pred             Ce
Q 026376          220 GK  221 (239)
Q Consensus       220 G~  221 (239)
                      |.
T Consensus       248 ~~  249 (276)
T cd03241         248 EV  249 (276)
T ss_pred             ec
Confidence            63

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.89  E-value=1.1e-22  Score=170.13  Aligned_cols=148  Identities=17%  Similarity=0.141  Sum_probs=110.1

Q ss_pred             CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEE-EEeeccCCCCCCCCcHHHHHHHhC
Q 026376           41 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIA-VFSQHHVDGLDLSSNPLLYMMRCF  119 (239)
Q Consensus        41 ~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~-~~~q~~~~~~~~~~~~~~~~~~~~  119 (239)
                      ...+.+|+++++.++++++|.||||+|||||+++++-.        .+  -..+| |+|....                 
T Consensus        16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~--------~~--la~~g~~vpa~~~-----------------   68 (222)
T cd03285          16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI--------VL--MAQIGCFVPCDSA-----------------   68 (222)
T ss_pred             CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH--------HH--HHHhCCCcCcccE-----------------
Confidence            34688999999999999999999999999999999721        00  00111 1111100                 


Q ss_pred             CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHh--ccCCCEEEEeCC---CCCCCHHHHHHHH-HHHhh-
Q 026376          120 PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT--FKKPHIILLDEP---SNHLDLDAVEALI-QGLVL-  192 (239)
Q Consensus       120 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral--~~~p~llllDEP---t~~LD~~~~~~l~-~~l~~-  192 (239)
                         .-..+.+++..+++.+.    ....+|.|+++++.+++++  +.+|+++|||||   |+++|+.+..+.+ +.+.+ 
T Consensus        69 ---~~~~~~~il~~~~l~d~----~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~  141 (222)
T cd03285          69 ---DIPIVDCILARVGASDS----QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQ  141 (222)
T ss_pred             ---EEeccceeEeeeccccc----hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhc
Confidence               00112345566776532    2578999999999999999  899999999999   9999998876543 66654 


Q ss_pred             cCCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376          193 FQGGILMVSHDEHLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       193 ~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~  223 (239)
                      .+.++|++||+ ..+.++||++..+++|++.
T Consensus       142 ~~~~vlisTH~-~el~~~~~~~~~i~~g~~~  171 (222)
T cd03285         142 IKCFCLFATHF-HELTALADEVPNVKNLHVT  171 (222)
T ss_pred             CCCeEEEEech-HHHHHHhhcCCCeEEEEEE
Confidence            36799999996 5667799999999999875

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.88  E-value=2e-21  Score=197.48  Aligned_cols=108  Identities=27%  Similarity=0.301  Sum_probs=92.6

Q ss_pred             HHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccC---CCEEEEeCCCCCCCHHHHHHHHHHH---hhcCCEEEE
Q 026376          126 KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK---PHIILLDEPSNHLDLDAVEALIQGL---VLFQGGILM  199 (239)
Q Consensus       126 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~---p~llllDEPt~~LD~~~~~~l~~~l---~~~~~tii~  199 (239)
                      +..+.|..+||......++..+|||||.||+-||.-|..+   +.+++|||||.||++.....+++.|   .+.+.|||+
T Consensus      1678 ~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tviv 1757 (1809)
T PRK00635       1678 KPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIY 1757 (1809)
T ss_pred             HHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEE
Confidence            3455678889976667899999999999999999999865   7999999999999999998887774   456789999


Q ss_pred             EecCHHHHhhhcCeEEEEe------CCeEEeeCCChhHHHHH
Q 026376          200 VSHDEHLISGSVEELWVVS------EGKATPFHGTFHDYKKM  235 (239)
Q Consensus       200 vsHd~~~~~~~~d~i~~l~------~G~i~~~~g~~~~~~~~  235 (239)
                      |+||++++.. ||+++-|.      .|+|+ +.|+|+++.+.
T Consensus      1758 ieH~~~~i~~-aD~iidlgp~gG~~GG~iv-a~Gtp~~i~~~ 1797 (1809)
T PRK00635       1758 IDHDPALLKQ-ADYLIEMGPGSGKTGGKIL-FSGPPKDISAS 1797 (1809)
T ss_pred             EeCCHHHHHh-CCEEEEcCCCcccCCCEEE-EEeCHHHHhhC
Confidence            9999999986 99999994      46776 78999998653

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.88  E-value=7.2e-23  Score=168.78  Aligned_cols=145  Identities=16%  Similarity=0.118  Sum_probs=97.2

Q ss_pred             eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCc-CCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcH
Q 026376           46 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL-QPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPE  124 (239)
Q Consensus        46 ~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~-~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~  124 (239)
                      -..++++.+|++++|+|||||||||||++|++.. .+..|.........++++.|.                        
T Consensus        20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi------------------------   75 (202)
T cd03243          20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRI------------------------   75 (202)
T ss_pred             EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEE------------------------
Confidence            3456777799999999999999999999999543 233333221111112221111                        


Q ss_pred             HHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH----HHHHhhcCCEEEEE
Q 026376          125 QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL----IQGLVLFQGGILMV  200 (239)
Q Consensus       125 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l----~~~l~~~~~tii~v  200 (239)
                            +..++..+. .....+.+|.+++| +..+.+++.+|+++|+||||+|+|+.....+    ++.+.+.+.++|++
T Consensus        76 ------~~~~~~~d~-i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~  147 (202)
T cd03243          76 ------FTRIGAEDS-ISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFA  147 (202)
T ss_pred             ------EEEecCccc-ccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence                  111122111 12344667777765 6666778899999999999999999866544    34445556799999


Q ss_pred             ecCHHHHhhhcCeEEEEeCCeEE
Q 026376          201 SHDEHLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       201 sHd~~~~~~~~d~i~~l~~G~i~  223 (239)
                      ||+.+++. .|+++..++.+++.
T Consensus       148 tH~~~~~~-~~~~~~~l~~~~~~  169 (202)
T cd03243         148 THFHELAD-LPEQVPGVKNLHME  169 (202)
T ss_pred             CChHHHHH-HhhcCCCeEEEEEE
Confidence            99998876 67788888888875

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.88  E-value=1.9e-21  Score=182.22  Aligned_cols=105  Identities=27%  Similarity=0.362  Sum_probs=89.5

Q ss_pred             HHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEe
Q 026376          128 RAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP---HIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVS  201 (239)
Q Consensus       128 ~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p---~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vs  201 (239)
                      .+.|..+||..-...++..+|||||.|||-||.-|....   .++||||||.||-...+..|++.|.+   .|.|||+|.
T Consensus       803 LqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIE  882 (935)
T COG0178         803 LQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE  882 (935)
T ss_pred             HHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence            445667888766678899999999999999999999876   99999999999999988887776654   577999999


Q ss_pred             cCHHHHhhhcCeEEEEe------CCeEEeeCCChhHHHH
Q 026376          202 HDEHLISGSVEELWVVS------EGKATPFHGTFHDYKK  234 (239)
Q Consensus       202 Hd~~~~~~~~d~i~~l~------~G~i~~~~g~~~~~~~  234 (239)
                      |+++.+. .||+|+-|-      .|+|+ +.|+|+++.+
T Consensus       883 HNLdVIk-~AD~IIDLGPeGG~~GG~iv-a~GTPeeva~  919 (935)
T COG0178         883 HNLDVIK-TADWIIDLGPEGGDGGGEIV-ASGTPEEVAK  919 (935)
T ss_pred             cccceEe-ecCEEEEcCCCCCCCCceEE-EecCHHHHHh
Confidence            9999986 699999983      46676 7899999865

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=99.87  E-value=1.2e-21  Score=172.66  Aligned_cols=181  Identities=23%  Similarity=0.289  Sum_probs=135.8

Q ss_pred             EEcCCCCceeeeeeEEEeCCC-----EEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCc
Q 026376           36 FGYPGGPILFKNLNFGIDLDS-----RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSN  110 (239)
Q Consensus        36 ~~y~~~~~~l~~isl~i~~Ge-----~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~  110 (239)
                      ++|++-+..+.+..|.|+.|+     ++..+|.||.|||||+++++|.++|++|.=.  ....++|-+|........+..
T Consensus       343 y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~--p~lnVSykpqkispK~~~tvR  420 (592)
T KOG0063|consen  343 YSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEI--PVLNVSYKPQKISPKREGTVR  420 (592)
T ss_pred             eccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcc--cccceeccccccCccccchHH
Confidence            557665667789999999884     7899999999999999999999999986311  234688888876443322221


Q ss_pred             HHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH----
Q 026376          111 PLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL----  186 (239)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l----  186 (239)
                      .+..-.-.......+-+.++++-+.++ ...++.+.+|||||+|||++|.+|-..+++++.|||.+.||.+.+...    
T Consensus       421 ~ll~~kIr~ay~~pqF~~dvmkpL~ie-~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~Askvi  499 (592)
T KOG0063|consen  421 QLLHTKIRDAYMHPQFVNDVMKPLQIE-NIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVI  499 (592)
T ss_pred             HHHHHHhHhhhcCHHHHHhhhhhhhHH-HHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHH
Confidence            111111111112345566677777775 466788999999999999999999999999999999999999876543    


Q ss_pred             HHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeC
Q 026376          187 IQGLVLFQGGILMVSHDEHLISGSVEELWVVSE  219 (239)
Q Consensus       187 ~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~  219 (239)
                      .+.+-..++|-.+|.||.-.+..++||+++.+.
T Consensus       500 kRfilhakktafvVEhdfImaTYladrvivf~G  532 (592)
T KOG0063|consen  500 KRFILHAKKTAFVVEHDFIMATYLADRVIVFEG  532 (592)
T ss_pred             HHHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence            334445577999999999988889999998864

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.84  E-value=9e-21  Score=156.48  Aligned_cols=140  Identities=16%  Similarity=0.131  Sum_probs=99.4

Q ss_pred             CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEE-eeccCCCCCCCCcHHHHHHHhC
Q 026376           41 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVF-SQHHVDGLDLSSNPLLYMMRCF  119 (239)
Q Consensus        41 ~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~-~q~~~~~~~~~~~~~~~~~~~~  119 (239)
                      +..+.+|++|++..|++++|+||||+||||++++|+++.--          ..+|+. |-..     ....         
T Consensus        15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l----------a~~G~~vpa~~-----~~l~---------   70 (204)
T cd03282          15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM----------AQIGCFVPAEY-----ATLP---------   70 (204)
T ss_pred             CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH----------HHcCCCcchhh-----cCcc---------
Confidence            35689999999999999999999999999999999887410          011111 1000     0000         


Q ss_pred             CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHH----HHHHHHHhhcCC
Q 026376          120 PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV----EALIQGLVLFQG  195 (239)
Q Consensus       120 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~----~~l~~~l~~~~~  195 (239)
                            ..+.++..++..+. ..+..+++|+|++|+ ..+.+++.+|+++|+|||++|+|+...    ..+++.+.+.+.
T Consensus        71 ------~~d~I~~~~~~~d~-~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~  142 (204)
T cd03282          71 ------IFNRLLSRLSNDDS-MERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKES  142 (204)
T ss_pred             ------ChhheeEecCCccc-cchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCC
Confidence                  11223444555432 346678999999976 455667899999999999999999653    345666666678


Q ss_pred             EEEEEecCHHHHhhhcC
Q 026376          196 GILMVSHDEHLISGSVE  212 (239)
Q Consensus       196 tii~vsHd~~~~~~~~d  212 (239)
                      ++|++||+.+++...++
T Consensus       143 ~~i~~TH~~~l~~~~~~  159 (204)
T cd03282         143 TVFFATHFRDIAAILGN  159 (204)
T ss_pred             EEEEECChHHHHHHhhc
Confidence            99999999999886653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.84  E-value=7.6e-21  Score=156.42  Aligned_cols=134  Identities=18%  Similarity=0.101  Sum_probs=79.1

Q ss_pred             CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-CceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCC
Q 026376           42 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-SSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP  120 (239)
Q Consensus        42 ~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~  120 (239)
                      +.+++|++|+.  |++++|+||||||||||+|+|+|.... ..|.-. ..   ..+++|. . .+....+..+.+.....
T Consensus        14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v-~a---~~~~~q~-~-~l~~~~~~~d~l~~~~s   85 (199)
T cd03283          14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPV-CA---SSFELPP-V-KIFTSIRVSDDLRDGIS   85 (199)
T ss_pred             CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEE-ec---CccCccc-c-eEEEeccchhccccccC
Confidence            35778776665  799999999999999999999986531 122211 00   1233331 1 11111111111100000


Q ss_pred             --CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH----HHHHhhcC
Q 026376          121 --GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL----IQGLVLFQ  194 (239)
Q Consensus       121 --~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l----~~~l~~~~  194 (239)
                        .....++.++++.++.                           .+|+++|+||||+++|+.....+    ++.+.+.+
T Consensus        86 ~~~~e~~~~~~iL~~~~~---------------------------~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~  138 (199)
T cd03283          86 YFYAELRRLKEIVEKAKK---------------------------GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKN  138 (199)
T ss_pred             hHHHHHHHHHHHHHhccC---------------------------CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCC
Confidence              0011223333333321                           59999999999999999876543    44455556


Q ss_pred             CEEEEEecCHHHHhhh
Q 026376          195 GGILMVSHDEHLISGS  210 (239)
Q Consensus       195 ~tii~vsHd~~~~~~~  210 (239)
                      .++|++||+++++..+
T Consensus       139 ~tiiivTH~~~~~~~~  154 (199)
T cd03283         139 TIGIISTHDLELADLL  154 (199)
T ss_pred             CEEEEEcCcHHHHHhh
Confidence            7999999999998765

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.83  E-value=3e-20  Score=181.86  Aligned_cols=194  Identities=23%  Similarity=0.321  Sum_probs=147.1

Q ss_pred             CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC---CceeEEecCc--------eEEEEEeeccCCC--CCCC
Q 026376           42 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP---SSGTVFRSAK--------VRIAVFSQHHVDG--LDLS  108 (239)
Q Consensus        42 ~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p---~~G~i~~~~~--------~~~~~~~q~~~~~--~~~~  108 (239)
                      ..+++|+|.-+++|+.+.++||.||||||||++++|-+.-   ..|+|.+++.        ..++|..|+....  +++.
T Consensus       128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr  207 (1391)
T KOG0065|consen  128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR  207 (1391)
T ss_pred             ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence            3589999999999999999999999999999999997653   2468888763        3588998875322  2222


Q ss_pred             CcHHHHHHHhC------CCCcHH-----HHHHHHHhcCCCccc----ccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 026376          109 SNPLLYMMRCF------PGVPEQ-----KLRAHLGSFGVTGNL----ALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE  173 (239)
Q Consensus       109 ~~~~~~~~~~~------~~~~~~-----~~~~~l~~~~l~~~~----~~~~~~~LSgGqkqrv~laral~~~p~llllDE  173 (239)
                      ++ +++..+..      ....+.     ..+.+++.+|++.-.    -+.-.+..|||||+||.+|-+++.+++++.+||
T Consensus       208 eT-ldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De  286 (1391)
T KOG0065|consen  208 ET-LDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE  286 (1391)
T ss_pred             eh-hhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence            22 33333211      112222     234688999996422    123456799999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCH-HHHhhhcCeEEEEeCCeEEeeCCChhHHHHHhh
Q 026376          174 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDE-HLISGSVEELWVVSEGKATPFHGTFHDYKKMLQ  237 (239)
Q Consensus       174 Pt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~  237 (239)
                      +|.|||..+.-++++.+++.    +.|++++-|.. ..+-.+.|+|++|.+|+++ |.|+.++...-.+
T Consensus       287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~i-y~Gp~d~~~~yFe  354 (1391)
T KOG0065|consen  287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQI-YQGPRDEVLPYFE  354 (1391)
T ss_pred             ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceE-EeccHHHHHHHHH
Confidence            99999999999988887754    45777777765 4566789999999999997 8899988766544

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.83  E-value=2.8e-20  Score=181.74  Aligned_cols=103  Identities=26%  Similarity=0.306  Sum_probs=89.6

Q ss_pred             HHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCH
Q 026376          130 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP--HIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDE  204 (239)
Q Consensus       130 ~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p--~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~  204 (239)
                      +|+.+|+.....++++.+|||||+|||+||++|+.+|  ++|||||||+|||+..+..+++.|++   .+.|||+||||+
T Consensus       472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~  551 (943)
T PRK00349        472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDE  551 (943)
T ss_pred             HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            5777888643268999999999999999999999997  99999999999999999888777654   467999999999


Q ss_pred             HHHhhhcCeEEEE------eCCeEEeeCCChhHHHH
Q 026376          205 HLISGSVEELWVV------SEGKATPFHGTFHDYKK  234 (239)
Q Consensus       205 ~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~  234 (239)
                      +++. .||++++|      ++|+++ +.|+++++..
T Consensus       552 ~~i~-~aD~vi~LgpgaG~~~G~iv-~~g~~~e~~~  585 (943)
T PRK00349        552 DTIR-AADYIVDIGPGAGVHGGEVV-ASGTPEEIMK  585 (943)
T ss_pred             HHHH-hCCEEEEeccccCCCCCEEe-eccCHHHHhc
Confidence            9986 69999999      889996 7899988743

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.83  E-value=4.1e-20  Score=180.34  Aligned_cols=102  Identities=26%  Similarity=0.291  Sum_probs=88.3

Q ss_pred             HHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCH
Q 026376          130 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP--HIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDE  204 (239)
Q Consensus       130 ~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p--~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~  204 (239)
                      .+..+|+.....++++.+|||||+|||+||++|+.+|  ++|||||||+|||+.....+++.|++   .+.|||+|+||+
T Consensus       470 ~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~  549 (924)
T TIGR00630       470 FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE  549 (924)
T ss_pred             hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4667788542257899999999999999999999986  89999999999999999888777654   467999999999


Q ss_pred             HHHhhhcCeEEEE------eCCeEEeeCCChhHHH
Q 026376          205 HLISGSVEELWVV------SEGKATPFHGTFHDYK  233 (239)
Q Consensus       205 ~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~  233 (239)
                      +++. .||++++|      ++|+++ +.|+++++.
T Consensus       550 ~~i~-~aD~vi~LgpgaG~~~G~Iv-~~g~~~el~  582 (924)
T TIGR00630       550 ETIR-AADYVIDIGPGAGIHGGEVV-ASGTPEEIL  582 (924)
T ss_pred             HHHh-hCCEEEEecccccCCCCEEe-eccCHHHHh
Confidence            9986 89999999      899986 789988874

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.83  E-value=1.4e-19  Score=155.66  Aligned_cols=77  Identities=21%  Similarity=0.183  Sum_probs=67.7

Q ss_pred             CCCCChHHHHHHHHHHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhc---C
Q 026376          145 MYTLSGGQKSRVAFAKITF---------KKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSV---E  212 (239)
Q Consensus       145 ~~~LSgGqkqrv~laral~---------~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~---d  212 (239)
                      ...+|+||||+++||++|+         .+|+++|+||||++||+..+..+.+.+.+.+ .+++++|+...+..+|   +
T Consensus       181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~-q~ii~~~~~~~~~~~~~~~~  259 (270)
T cd03242         181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV-QTFVTTTDLADFDALWLRRA  259 (270)
T ss_pred             HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC-CEEEEeCCchhccchhccCc
Confidence            4568999999999999985         7999999999999999999999999998765 5777777777777777   7


Q ss_pred             eEEEEeCCeE
Q 026376          213 ELWVVSEGKA  222 (239)
Q Consensus       213 ~i~~l~~G~i  222 (239)
                      +++.+++|++
T Consensus       260 ~i~~l~~g~i  269 (270)
T cd03242         260 QIFRVDAGTL  269 (270)
T ss_pred             cEEEEeCcEE
Confidence            8999999986

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=99.81  E-value=1e-19  Score=151.61  Aligned_cols=142  Identities=23%  Similarity=0.262  Sum_probs=92.8

Q ss_pred             CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-CceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCC
Q 026376           42 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-SSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP  120 (239)
Q Consensus        42 ~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~  120 (239)
                      ..+.++++|+..+ ++++|+||||||||||||+|++..-. ..|.........++++.|-.                   
T Consensus        18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~-------------------   77 (216)
T cd03284          18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIF-------------------   77 (216)
T ss_pred             ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEe-------------------
Confidence            4578999999987 99999999999999999999875321 12221111112223322210                   


Q ss_pred             CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHH----HHHHHHHh--ccCCCEEEEeCC---CCCCCHHHH-HHHHHHH
Q 026376          121 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKS----RVAFAKIT--FKKPHIILLDEP---SNHLDLDAV-EALIQGL  190 (239)
Q Consensus       121 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq----rv~laral--~~~p~llllDEP---t~~LD~~~~-~~l~~~l  190 (239)
                                 ..++.        ..++|.|+.+    +..+++++  +.+|+++|||||   |+++|.... ..+++.+
T Consensus        78 -----------~~~~~--------~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l  138 (216)
T cd03284          78 -----------TRIGA--------SDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYL  138 (216)
T ss_pred             -----------ccCCc--------hhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHH
Confidence                       00000        1233444333    33455554  579999999999   999998764 5677777


Q ss_pred             hhc-CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376          191 VLF-QGGILMVSHDEHLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       191 ~~~-~~tii~vsHd~~~~~~~~d~i~~l~~G~i~  223 (239)
                      .+. +.++|++||+.++ ..++|++..+++|++.
T Consensus       139 ~~~~~~~vi~~TH~~~l-~~l~~~~~~v~~~~~~  171 (216)
T cd03284         139 HEKIGAKTLFATHYHEL-TELEGKLPRVKNFHVA  171 (216)
T ss_pred             HhccCCcEEEEeCcHHH-HHHhhcCCCeEEEEEE
Confidence            776 7799999999755 4578877666666654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=99.78  E-value=3.2e-19  Score=145.16  Aligned_cols=124  Identities=21%  Similarity=0.239  Sum_probs=80.0

Q ss_pred             EEEEECCCCCcHHHHHHHHh-cCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIA-GELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFG  135 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~-Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  135 (239)
                      +++|+||||+|||||+|.++ ..+.+..|.........++++.                              +++..++
T Consensus         1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d------------------------------~il~~~~   50 (185)
T smart00534        1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFD------------------------------RIFTRIG   50 (185)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccc------------------------------eEEEEeC
Confidence            36899999999999999998 3333344432211111111111                              1233344


Q ss_pred             CCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH----HHHHhhc-CCEEEEEecCHHHHhhh
Q 026376          136 VTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL----IQGLVLF-QGGILMVSHDEHLISGS  210 (239)
Q Consensus       136 l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l----~~~l~~~-~~tii~vsHd~~~~~~~  210 (239)
                      ..+ ...+..+++|+|++|...+++ .+.+|+++|+|||++|+|+.....+    ++.+.+. +.++|++||+.+. .++
T Consensus        51 ~~d-~~~~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l-~~~  127 (185)
T smart00534       51 ASD-SLAQGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHEL-TKL  127 (185)
T ss_pred             CCC-chhccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHH-HHH
Confidence            433 234567899998887444443 2459999999999999999865544    3444443 6689999999964 457


Q ss_pred             cCe
Q 026376          211 VEE  213 (239)
Q Consensus       211 ~d~  213 (239)
                      |++
T Consensus       128 ~~~  130 (185)
T smart00534      128 ADE  130 (185)
T ss_pred             hhc
Confidence            764

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.77  E-value=6.5e-18  Score=140.41  Aligned_cols=131  Identities=21%  Similarity=0.203  Sum_probs=91.4

Q ss_pred             eeeeeeEEEeCC--CEEEEECCCCCcHHHHHHHHhc--CcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhC
Q 026376           44 LFKNLNFGIDLD--SRIAMVGPNGIGKSTILKLIAG--ELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCF  119 (239)
Q Consensus        44 ~l~~isl~i~~G--e~~~iiG~NGsGKSTLl~~l~G--l~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~  119 (239)
                      +-+|++  +..+  .+++|+||||+|||||||.|+.  ++ +..|.........++|+.|... .+....+         
T Consensus        18 vpnd~~--l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~~~~~~~~d~i~~-~l~~~~s---------   84 (213)
T cd03281          18 VPNDTE--IGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPADSATIGLVDKIFT-RMSSRES---------   84 (213)
T ss_pred             EcceEE--ecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcCCcEEeeeeeeee-eeCCccC---------
Confidence            334444  4444  7899999999999999999984  34 5677776666667787777532 1110000         


Q ss_pred             CCCcHHHHHHHHHhcCCCcccccCCCCCCC--hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHH----HHHHHHhhc
Q 026376          120 PGVPEQKLRAHLGSFGVTGNLALQPMYTLS--GGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE----ALIQGLVLF  193 (239)
Q Consensus       120 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS--gGqkqrv~laral~~~p~llllDEPt~~LD~~~~~----~l~~~l~~~  193 (239)
                             +                 ...+|  .-+.||+++|++++.+|+++|+|||++|+|+....    .+++.+.+.
T Consensus        85 -------i-----------------~~~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~  140 (213)
T cd03281          85 -------V-----------------SSGQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKR  140 (213)
T ss_pred             -------h-----------------hhccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhc
Confidence                   0                 01112  45779999999999999999999999999986432    344555443


Q ss_pred             C---CEEEEEecCHHHHhhhc
Q 026376          194 Q---GGILMVSHDEHLISGSV  211 (239)
Q Consensus       194 ~---~tii~vsHd~~~~~~~~  211 (239)
                      +   .++|++||+.+.+....
T Consensus       141 ~~~~~~vli~TH~~~l~~~~~  161 (213)
T cd03281         141 GPECPRVIVSTHFHELFNRSL  161 (213)
T ss_pred             CCCCcEEEEEcChHHHHHhhh
Confidence            2   37999999999987653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=99.74  E-value=1.7e-17  Score=138.20  Aligned_cols=163  Identities=25%  Similarity=0.301  Sum_probs=96.2

Q ss_pred             eeeeEEEeCCCEEEEECCCCCcHHHHHHHHh-cCc--CCCce-------eEEecC------ceEEEEEeeccCCCCCCCC
Q 026376           46 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIA-GEL--QPSSG-------TVFRSA------KVRIAVFSQHHVDGLDLSS  109 (239)
Q Consensus        46 ~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~-Gl~--~p~~G-------~i~~~~------~~~~~~~~q~~~~~~~~~~  109 (239)
                      ++..+.+.+ .+++|+|||||||||++.+|. .+-  ...+.       -|....      ...+...+++.........
T Consensus        16 ~~~~~~~~~-~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~~~~~   94 (220)
T PF02463_consen   16 KNAELSFSP-GLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVELIFDNSDEEFELDK   94 (220)
T ss_dssp             CEEEEETTS-SEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEEEEEECTTEESSSSS
T ss_pred             CeEEEecCC-CCEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Confidence            456677765 599999999999999999993 222  11111       111100      1223333332211100000


Q ss_pred             cH--HH-HHH-----H---hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc----cCCCEEEEeCC
Q 026376          110 NP--LL-YMM-----R---CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF----KKPHIILLDEP  174 (239)
Q Consensus       110 ~~--~~-~~~-----~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~----~~p~llllDEP  174 (239)
                      ..  +. ...     .   .........+.+.+....+..       ..||||||.+++||-.|+    ..+++++||||
T Consensus        95 ~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~-------~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEv  167 (220)
T PF02463_consen   95 KEIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISP-------EFLSGGEKSLVALALLLALQRYKPSPFLILDEV  167 (220)
T ss_dssp             SEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTT-------TGS-HHHHHHHHHHHHHHHHTCS--SEEEEEST
T ss_pred             cccccccccccccccccccccccccccccccccccccccc-------ccccccccccccccccccccccccccccccccc
Confidence            00  00 000     0   000122455666676666542       299999999999997663    57899999999


Q ss_pred             CCCCCHHHHHHHHHHHhhcC--CEEEEEecCHHHHhhhcCeEEEE
Q 026376          175 SNHLDLDAVEALIQGLVLFQ--GGILMVSHDEHLISGSVEELWVV  217 (239)
Q Consensus       175 t~~LD~~~~~~l~~~l~~~~--~tii~vsHd~~~~~~~~d~i~~l  217 (239)
                      .++||...+..+.+.|++..  .-+|++||+..+.. .||+.+.+
T Consensus       168 d~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~-~a~~~~~v  211 (220)
T PF02463_consen  168 DAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFE-DADKLIGV  211 (220)
T ss_dssp             TTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHT-T-SEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            99999999999999998775  57999999998876 57887765

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>TIGR01069 mutS2 MutS2 family protein

Probab=99.73  E-value=6.1e-18  Score=163.28  Aligned_cols=148  Identities=24%  Similarity=0.310  Sum_probs=98.1

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCC-CEEEEECCCCCcHHHHHHHHhcC-cCCCcee-EEecCceEEEEEeeccCCC
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLD-SRIAMVGPNGIGKSTILKLIAGE-LQPSSGT-VFRSAKVRIAVFSQHHVDG  104 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~G-e~~~iiG~NGsGKSTLl~~l~Gl-~~p~~G~-i~~~~~~~~~~~~q~~~~~  104 (239)
                      .+.++++..-+-... -.-.+|+++..+ ++++|+||||+|||||||+|+|. +.+..|- |.......++|+.|.    
T Consensus       295 ~i~l~~~rhPll~~~-~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i----  369 (771)
T TIGR01069       295 KIILENARHPLLKEP-KVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEI----  369 (771)
T ss_pred             CEEEccccCceecCC-ceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhhe----
Confidence            567766543221110 122478999887 89999999999999999999998 5555552 211111111211111    


Q ss_pred             CCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHH
Q 026376          105 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE  184 (239)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~  184 (239)
                                    +            ..++.... .....+++|+|+++++.|++++ .+|+++|+|||++|+|+....
T Consensus       370 --------------~------------~~i~~~~s-i~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~  421 (771)
T TIGR01069       370 --------------F------------ADIGDEQS-IEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGS  421 (771)
T ss_pred             --------------e------------eecChHhH-HhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHH
Confidence                          0            01111111 1234678999999999998876 789999999999999998766


Q ss_pred             HH----HHHHhhcCCEEEEEecCHHHHh
Q 026376          185 AL----IQGLVLFQGGILMVSHDEHLIS  208 (239)
Q Consensus       185 ~l----~~~l~~~~~tii~vsHd~~~~~  208 (239)
                      .+    ++.+.+.+.++|++||+.++..
T Consensus       422 ala~aiLe~l~~~g~~viitTH~~eL~~  449 (771)
T TIGR01069       422 ALAISILEYLLKQNAQVLITTHYKELKA  449 (771)
T ss_pred             HHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence            55    4455555778999999988643

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=99.72  E-value=2e-16  Score=135.57  Aligned_cols=143  Identities=24%  Similarity=0.340  Sum_probs=87.7

Q ss_pred             CEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcC
Q 026376           56 SRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFG  135 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  135 (239)
                      .-++|+||||||||||+++|+|+++|++|+|.+++.. +..+            .....+........+..       ++
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~-v~~~------------d~~~ei~~~~~~~~q~~-------~~  171 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKK-VGIV------------DERSEIAGCVNGVPQHD-------VG  171 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEE-eecc------------hhHHHHHHHhccccccc-------cc
Confidence            5689999999999999999999999999999887643 1110            00001111110111100       00


Q ss_pred             CCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHH--H------
Q 026376          136 VTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHL--I------  207 (239)
Q Consensus       136 l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~--~------  207 (239)
                             ....-|.+=.|.....+.+.+.+|+++|+|||++.   +....+++.+. .+.++|++||+...  +      
T Consensus       172 -------~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~---e~~~~l~~~~~-~G~~vI~ttH~~~~~~~~~r~~~  240 (270)
T TIGR02858       172 -------IRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGRE---EDVEALLEALH-AGVSIIATAHGRDVEDLYKRPVF  240 (270)
T ss_pred             -------ccccccccchHHHHHHHHHHhCCCCEEEEeCCCcH---HHHHHHHHHHh-CCCEEEEEechhHHHHHHhChHH
Confidence                   11111222222222344444479999999999853   33445555554 47799999998765  4      


Q ss_pred             -----hhhcCeEEEEeCCeEEeeCCChhHH
Q 026376          208 -----SGSVEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       208 -----~~~~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                           ..+++|+++|++|+   ..|+++++
T Consensus       241 ~~l~~~~~~~r~i~L~~~~---~~g~~~~i  267 (270)
T TIGR02858       241 KELIENEAFERYVVLSRRK---GPGTVEAV  267 (270)
T ss_pred             HHHHhcCceEEEEEEecCC---CCCceeec
Confidence                 25689999999876   35665544

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=99.69  E-value=2.5e-16  Score=131.52  Aligned_cols=133  Identities=17%  Similarity=0.208  Sum_probs=91.8

Q ss_pred             CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc-CcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCC
Q 026376           42 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG-ELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP  120 (239)
Q Consensus        42 ~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~G-l~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~  120 (239)
                      ..+.+|++|.+.+|++++|+||||+||||+++++++ .+.+..|...+.....++++.|-...                 
T Consensus        18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~-----------------   80 (222)
T cd03287          18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTR-----------------   80 (222)
T ss_pred             CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEE-----------------
Confidence            467899999999999999999999999999999999 77888898776655556655443210                 


Q ss_pred             CCcHHHHHHHHHhcCCCcccccCCCCCCC--hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH---H-HHHHHHHHhhc-
Q 026376          121 GVPEQKLRAHLGSFGVTGNLALQPMYTLS--GGQKSRVAFAKITFKKPHIILLDEPSNHLDLD---A-VEALIQGLVLF-  193 (239)
Q Consensus       121 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LS--gGqkqrv~laral~~~p~llllDEPt~~LD~~---~-~~~l~~~l~~~-  193 (239)
                                   ++-.+..    ...+|  ..|-++++-+..-+.+++++|+|||.+|.|+.   + ...+++.+.+. 
T Consensus        81 -------------~~~~d~~----~~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~  143 (222)
T cd03287          81 -------------MGASDSI----QHGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEK  143 (222)
T ss_pred             -------------ecCcccc----ccccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhcc
Confidence                         0000000    01122  13334443333445689999999997777644   3 23466777766 


Q ss_pred             CCEEEEEecCHHHHh
Q 026376          194 QGGILMVSHDEHLIS  208 (239)
Q Consensus       194 ~~tii~vsHd~~~~~  208 (239)
                      +.++|++||+.+...
T Consensus       144 ~~~~i~~TH~~~l~~  158 (222)
T cd03287         144 KCLVLFVTHYPSLGE  158 (222)
T ss_pred             CCeEEEEcccHHHHH
Confidence            669999999998765

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK13695 putative NTPase; Provisional

Probab=99.68  E-value=3.5e-17  Score=131.70  Aligned_cols=152  Identities=17%  Similarity=0.218  Sum_probs=100.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV  136 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  136 (239)
                      .++|+|+||||||||++.|++.+.+ .|. .     ..+|+.|+....  .....+. +......     ....+...+.
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G~-~-----~~g~~~~~~~~~--~~~~~~~-~~~~~~~-----~~~~l~~~~~   66 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAELLKE-EGY-K-----VGGFYTEEVREG--GKRIGFK-IIDLDTG-----EEGILARVGF   66 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH-CCC-e-----EEEEEcHHHHhc--CCccceE-EEEcCCC-----CeEEccccCC
Confidence            5789999999999999999887655 442 1     245555542110  0000000 0000000     0112233332


Q ss_pred             -CcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC--CCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCe
Q 026376          137 -TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE--PSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE  213 (239)
Q Consensus       137 -~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDE--Pt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~  213 (239)
                       ......+....+||+++-+..+++..+.+|+++++||  |+.++|....+.+.+.+ +.+.++|+|+|+. .+..++|+
T Consensus        67 ~~~~~~~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~-~~~~~~i~v~h~~-~~~~~~~~  144 (174)
T PRK13695         67 PSRPRVGKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL-DSEKPVIATLHRR-SVHPFVQE  144 (174)
T ss_pred             CCCCceeeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH-hCCCeEEEEECch-hhHHHHHH
Confidence             2222234456799999999999999999999999999  77788876666666666 6678999999995 55568999


Q ss_pred             EEEEeCCeEEee
Q 026376          214 LWVVSEGKATPF  225 (239)
Q Consensus       214 i~~l~~G~i~~~  225 (239)
                      +..+.+|++...
T Consensus       145 i~~~~~~~i~~~  156 (174)
T PRK13695        145 IKSRPGGRVYEL  156 (174)
T ss_pred             HhccCCcEEEEE
Confidence            999999998643

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=99.65  E-value=2.2e-16  Score=139.61  Aligned_cols=165  Identities=24%  Similarity=0.328  Sum_probs=113.1

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecC--ceEEEEE--------eeccC-CCCC--CCCcHHHHHHHhC
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA--KVRIAVF--------SQHHV-DGLD--LSSNPLLYMMRCF  119 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~--~~~~~~~--------~q~~~-~~~~--~~~~~~~~~~~~~  119 (239)
                      .+|++.+++|-||.||||-+++++|-++|.-|......  ...++|+        ++... ..+.  ...-..+.+.+..
T Consensus        98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~  177 (592)
T KOG0063|consen   98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV  177 (592)
T ss_pred             CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence            57999999999999999999999999999877642110  1111221        11110 0000  0000011111100


Q ss_pred             ---------CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 026376          120 ---------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL  190 (239)
Q Consensus       120 ---------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l  190 (239)
                               ...++....++++.+.+. ...++.+.+|||||-||.+||.+.++++++.++|||.+.||...+......+
T Consensus       178 k~~v~~~l~~~~~r~~~~~~~~~~~L~-~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~I  256 (592)
T KOG0063|consen  178 KGTVGSLLDRKDERDNKEEVCDQLDLN-NLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITI  256 (592)
T ss_pred             HHHHHHHHHHHhhcccHHHHHHHHHHh-hHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHH
Confidence                     001122345566666665 3567888999999999999999999999999999999999999876655555


Q ss_pred             hhc---CCEEEEEecCHHHHhhhcCeEEEEe
Q 026376          191 VLF---QGGILMVSHDEHLISGSVEELWVVS  218 (239)
Q Consensus       191 ~~~---~~tii~vsHd~~~~~~~~d~i~~l~  218 (239)
                      +++   ..-||+|.||+..+..+.|-+.++-
T Consensus       257 Rsl~~p~~YiIVVEHDLsVLDylSDFiCcLY  287 (592)
T KOG0063|consen  257 RSLINPDRYIIVVEHDLSVLDYLSDFICCLY  287 (592)
T ss_pred             HHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence            443   4569999999999999999998885

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=99.61  E-value=1.3e-15  Score=147.58  Aligned_cols=140  Identities=20%  Similarity=0.225  Sum_probs=91.9

Q ss_pred             eeeEEEeC-CCEEEEECCCCCcHHHHHHHHhcCc-CCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcH
Q 026376           47 NLNFGIDL-DSRIAMVGPNGIGKSTILKLIAGEL-QPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPE  124 (239)
Q Consensus        47 ~isl~i~~-Ge~~~iiG~NGsGKSTLl~~l~Gl~-~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~  124 (239)
                      ..++.+.. +.++.|+|||++||||+||.++... -+..|-          ++|-.....+    ..+            
T Consensus       318 pndi~l~~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~----------~vpa~~~~~i----~~~------------  371 (782)
T PRK00409        318 PKDISLGFDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGL----------PIPANEPSEI----PVF------------  371 (782)
T ss_pred             CceeEECCCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCC----------CcccCCCccc----ccc------------
Confidence            44555554 4679999999999999999996431 111121          1111100000    000            


Q ss_pred             HHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH----HHHHhhcCCEEEEE
Q 026376          125 QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL----IQGLVLFQGGILMV  200 (239)
Q Consensus       125 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l----~~~l~~~~~tii~v  200 (239)
                         ..++..+|-... ..+..+++|+||+|++.|++++ .+|+++|+|||++|+|+.....+    ++.+.+.+.++|++
T Consensus       372 ---~~i~~~ig~~~s-i~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIit  446 (782)
T PRK00409        372 ---KEIFADIGDEQS-IEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIAT  446 (782)
T ss_pred             ---ceEEEecCCccc-hhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence               011112333222 2356789999999999999988 89999999999999999865544    44555567799999


Q ss_pred             ecCHHHHhhhcCeEEEE
Q 026376          201 SHDEHLISGSVEELWVV  217 (239)
Q Consensus       201 sHd~~~~~~~~d~i~~l  217 (239)
                      ||+.+.....+++..+.
T Consensus       447 TH~~el~~~~~~~~~v~  463 (782)
T PRK00409        447 THYKELKALMYNREGVE  463 (782)
T ss_pred             CChHHHHHHHhcCCCeE
Confidence            99999888777665443

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=99.58  E-value=2e-14  Score=121.99  Aligned_cols=160  Identities=15%  Similarity=0.147  Sum_probs=102.7

Q ss_pred             EEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCC--------------CCCCCcHHHHH
Q 026376           50 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG--------------LDLSSNPLLYM  115 (239)
Q Consensus        50 l~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~--------------~~~~~~~~~~~  115 (239)
                      +.+.+|++++|+||+|+|||||++.|++......+.+.     .+.++.++....              -..........
T Consensus        11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~-----~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~   85 (249)
T cd01128          11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVY-----LIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHV   85 (249)
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeE-----EEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHH
Confidence            58899999999999999999999999998876533222     112212221000              00000111100


Q ss_pred             H---------Hh--CCCC-------cHHHHHHHHHhcCCCcccccCCCCCCChHH--------HHHHHHHHHhccCCCEE
Q 026376          116 M---------RC--FPGV-------PEQKLRAHLGSFGVTGNLALQPMYTLSGGQ--------KSRVAFAKITFKKPHII  169 (239)
Q Consensus       116 ~---------~~--~~~~-------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq--------kqrv~laral~~~p~ll  169 (239)
                      .         ..  ..+.       +-.+.....+.+..      .....+|||+        +||+++||++..+++|.
T Consensus        86 ~~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~------~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt  159 (249)
T cd01128          86 QVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVP------PSGKILSGGVDANALHKPKRFFGAARNIEEGGSLT  159 (249)
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccc------cCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceE
Confidence            0         00  0000       01122222222221      1234579999        99999999999999999


Q ss_pred             EEeCCCCCCCHHHH-H-HHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376          170 LLDEPSNHLDLDAV-E-ALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       170 llDEPt~~LD~~~~-~-~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~  223 (239)
                      +|  ||+.+|..+. . -+.+.++....|.|++||++.... .++.|.+|+.|++.
T Consensus       160 ~l--~T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~la~~~-~~paI~vl~s~sr~  212 (249)
T cd01128         160 II--ATALVDTGSRMDDVIFEEFKGTGNMELVLDRRLAERR-IFPAIDILKSGTRK  212 (249)
T ss_pred             Ee--eeheecCCCcccchHHHHHhcCCCcEEEEchHHhhCC-CCCeEEEcCCCCcc
Confidence            99  9999996432 2 345666656679999999999876 68999999999975

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>TIGR00634 recN DNA repair protein RecN

Probab=99.56  E-value=1e-14  Score=137.40  Aligned_cols=75  Identities=20%  Similarity=0.271  Sum_probs=66.5

Q ss_pred             CCCChHHHHHHHHHHHhccC----CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeC
Q 026376          146 YTLSGGQKSRVAFAKITFKK----PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSE  219 (239)
Q Consensus       146 ~~LSgGqkqrv~laral~~~----p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~  219 (239)
                      ..|||||+||++||++++..    |++|||||||+|||+.....+.+.+++.  +.+||+|||++..+. +||++++|++
T Consensus       439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~-~ad~~~~l~k  517 (563)
T TIGR00634       439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAA-HADAHFKVEK  517 (563)
T ss_pred             hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHH-hcCeEEEEEE
Confidence            46899999999999999985    6999999999999999998888877654  569999999999886 8999999987


Q ss_pred             Ce
Q 026376          220 GK  221 (239)
Q Consensus       220 G~  221 (239)
                      |.
T Consensus       518 ~~  519 (563)
T TIGR00634       518 EG  519 (563)
T ss_pred             cc
Confidence            53

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>TIGR00618 sbcc exonuclease SbcC

Probab=99.56  E-value=9.7e-15  Score=146.23  Aligned_cols=80  Identities=21%  Similarity=0.181  Sum_probs=71.5

Q ss_pred             ccCCCCCCChHHHHHHHHHHHhcc----------CCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHH
Q 026376          141 ALQPMYTLSGGQKSRVAFAKITFK----------KPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLI  207 (239)
Q Consensus       141 ~~~~~~~LSgGqkqrv~laral~~----------~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~  207 (239)
                      ..+++.+|||||++||+||+||+.          +|++||+||||++||+.+...+++.|..   .+.+|+||||++++.
T Consensus       944 ~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~ 1023 (1042)
T TIGR00618       944 SVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFR 1023 (1042)
T ss_pred             CcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH
Confidence            456889999999999999999985          7999999999999999998888776654   466899999999999


Q ss_pred             hhhcCeEEEEeCC
Q 026376          208 SGSVEELWVVSEG  220 (239)
Q Consensus       208 ~~~~d~i~~l~~G  220 (239)
                      ..+||+|++++.+
T Consensus      1024 ~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618      1024 ERIPHRILVKKTN 1036 (1042)
T ss_pred             HhhCCEEEEEECC
Confidence            9999999999754

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PHA02562 46 endonuclease subunit; Provisional

Probab=99.55  E-value=1.3e-14  Score=136.56  Aligned_cols=79  Identities=22%  Similarity=0.358  Sum_probs=68.5

Q ss_pred             CCCCCCChHHHHHHHHHHHhc----------cCCCEEEEeCCC-CCCCHHHHHHHHHHHhhc-CCEEEEEecCHHHHhhh
Q 026376          143 QPMYTLSGGQKSRVAFAKITF----------KKPHIILLDEPS-NHLDLDAVEALIQGLVLF-QGGILMVSHDEHLISGS  210 (239)
Q Consensus       143 ~~~~~LSgGqkqrv~laral~----------~~p~llllDEPt-~~LD~~~~~~l~~~l~~~-~~tii~vsHd~~~~~~~  210 (239)
                      .++.+|||||+||++||+||+          .+|++||||||| ++||+.+...+.+.|.+. +.+||+|||+.+... .
T Consensus       464 ~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~~~~~iiiish~~~~~~-~  542 (562)
T PHA02562        464 FSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSLKDTNVFVISHKDHDPQ-K  542 (562)
T ss_pred             cChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhCCCCeEEEEECchhchh-h
Confidence            356899999999999999987          599999999998 789999999999988875 458999999977664 6


Q ss_pred             cCeEEEEeC-CeE
Q 026376          211 VEELWVVSE-GKA  222 (239)
Q Consensus       211 ~d~i~~l~~-G~i  222 (239)
                      ||++++|.+ |+.
T Consensus       543 ~d~~~~l~~~~~~  555 (562)
T PHA02562        543 FDRHLKMEKVGRF  555 (562)
T ss_pred             hhcEEEEEEECCe
Confidence            899999986 554

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=99.53  E-value=5e-14  Score=117.34  Aligned_cols=137  Identities=18%  Similarity=0.197  Sum_probs=85.4

Q ss_pred             CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCC-ceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhC
Q 026376           41 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-SGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCF  119 (239)
Q Consensus        41 ~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~-~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~  119 (239)
                      ...+-+|++|+.++|++++|+||||+||||+++++++..-.. .|-........++++.+                    
T Consensus        16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~--------------------   75 (218)
T cd03286          16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDR--------------------   75 (218)
T ss_pred             CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccE--------------------
Confidence            346789999999999999999999999999999998763221 12100000001111100                    


Q ss_pred             CCCcHHHHHHHHHhcCCCcccccCCCCCCCh--HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH----HHHHhhc
Q 026376          120 PGVPEQKLRAHLGSFGVTGNLALQPMYTLSG--GQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL----IQGLVLF  193 (239)
Q Consensus       120 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg--Gqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l----~~~l~~~  193 (239)
                                ++..++-.+..    ...+|.  .|.++++-....+.+|+++|+|||++|+|+.....+    ++.+.+.
T Consensus        76 ----------i~~~~~~~d~~----~~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~  141 (218)
T cd03286          76 ----------IFTRIGARDDI----MKGESTFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKK  141 (218)
T ss_pred             ----------EEEecCccccc----ccCcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHh
Confidence                      01111111111    112222  344555444444578999999999999998764433    4555554


Q ss_pred             -CCEEEEEecCHHHHhhhc
Q 026376          194 -QGGILMVSHDEHLISGSV  211 (239)
Q Consensus       194 -~~tii~vsHd~~~~~~~~  211 (239)
                       +.++|++||+.+++..++
T Consensus       142 ~~~~~i~~TH~~el~~~~~  160 (218)
T cd03286         142 VKCLTLFSTHYHSLCDEFH  160 (218)
T ss_pred             cCCcEEEEeccHHHHHHhh
Confidence             678999999999988765

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=99.52  E-value=5.1e-14  Score=118.36  Aligned_cols=157  Identities=22%  Similarity=0.210  Sum_probs=90.2

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHH-HHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCC
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTI-LKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDL  107 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTL-l~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~  107 (239)
                      +.++++.+.++++          +++|+++.|+|+|||||||| ++++++..++...         ..|+..+.    +.
T Consensus         8 ~~~~~ld~~l~gg----------i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~---------~~yi~~e~----~~   64 (230)
T PRK08533          8 LSRDELHKRLGGG----------IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYS---------VSYVSTQL----TT   64 (230)
T ss_pred             EEEeeeehhhCCC----------CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCc---------EEEEeCCC----CH
Confidence            4566666666432          68899999999999999999 7999988765322         23332111    00


Q ss_pred             CCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc----CCCEEEEeCCCCCC----C
Q 026376          108 SSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK----KPHIILLDEPSNHL----D  179 (239)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~----~p~llllDEPt~~L----D  179 (239)
                       ......+.. . +.+.   .+.... +.-.. ..-. ..+|+++.++-.+++.+..    +|+++++||||+++    |
T Consensus        65 -~~~~~~~~~-~-g~~~---~~~~~~-~~l~~-~~~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d  135 (230)
T PRK08533         65 -TEFIKQMMS-L-GYDI---NKKLIS-GKLLY-IPVY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDAS  135 (230)
T ss_pred             -HHHHHHHHH-h-CCch---HHHhhc-CcEEE-EEec-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcc
Confidence             111122211 1 1111   111111 10000 1111 2467776666565554443    69999999999999    7


Q ss_pred             HHHHHHHHHHHh---hcCCEEEEEecCHHH--------HhhhcCeEEEEe
Q 026376          180 LDAVEALIQGLV---LFQGGILMVSHDEHL--------ISGSVEELWVVS  218 (239)
Q Consensus       180 ~~~~~~l~~~l~---~~~~tii~vsHd~~~--------~~~~~d~i~~l~  218 (239)
                      +.....+.+.++   +.+.|+ ++||+...        +..+||-++.|+
T Consensus       136 ~~~~~~l~~~l~~l~~~g~tv-i~t~~~~~~~~~~~~~~~~~~DgvI~L~  184 (230)
T PRK08533        136 EVAVNDLMAFFKRISSLNKVI-ILTANPKELDESVLTILRTAATMLIRLE  184 (230)
T ss_pred             hHHHHHHHHHHHHHHhCCCEE-EEEecccccccccceeEEEeeeEEEEEE
Confidence            776666666655   334554 55666543        345678888776

>PRK10869 recombination and repair protein; Provisional

Probab=99.52  E-value=5.4e-14  Score=131.88  Aligned_cols=73  Identities=21%  Similarity=0.271  Sum_probs=65.1

Q ss_pred             CCChHHHHHHHHHHHhcc----CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCC
Q 026376          147 TLSGGQKSRVAFAKITFK----KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEG  220 (239)
Q Consensus       147 ~LSgGqkqrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G  220 (239)
                      .|||||+||++||++++.    +|+++|||||++|||..+...+.+.+++.  +.+||+|||++..+ .+||+.+.+.++
T Consensus       430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~-~~ad~~~~v~k~  508 (553)
T PRK10869        430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVA-GCGHQHFFVSKE  508 (553)
T ss_pred             hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEecc
Confidence            489999999999999996    58999999999999999999888888765  45899999999877 589999999764

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=99.51  E-value=1.6e-13  Score=124.20  Aligned_cols=162  Identities=17%  Similarity=0.198  Sum_probs=109.7

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCC
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDL  107 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~  107 (239)
                      .++-+.++..|..+..+++.+ |.+.+|++++|+|+||+|||||+++|+|..+|+.|.|...+        |..      
T Consensus       130 ~~~r~~i~~~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iG--------erg------  194 (432)
T PRK06793        130 AFEREEITDVFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVG--------ERG------  194 (432)
T ss_pred             chheechhhccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCC--------CCc------
Confidence            467778888886555688875 99999999999999999999999999999999888654222        211      


Q ss_pred             CCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc-------cCCCEEEEeCCCCCCCH
Q 026376          108 SSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF-------KKPHIILLDEPSNHLDL  180 (239)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~-------~~p~llllDEPt~~LD~  180 (239)
                       .+...++            +..+..-++.....-....+.|.|+|+|++.+.+.+       .++-++++|+||++.|+
T Consensus       195 -~ev~e~~------------~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A  261 (432)
T PRK06793        195 -REVKDFI------------RKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADA  261 (432)
T ss_pred             -ccHHHHH------------HHHhhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHH
Confidence             1111111            111111122211111345788999999999998887       78999999999999999


Q ss_pred             HHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376          181 DAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       181 ~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~  223 (239)
                      .  .++-..+.+   .+.+..+.||-..++++.+    ..+.|.+.
T Consensus       262 ~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag----~~~~GSiT  301 (432)
T PRK06793        262 R--RSVDIAVKELPIGGKTLLMESYMKKLLERSG----KTQKGSIT  301 (432)
T ss_pred             H--HHHHHHhcCCCCCCeeeeeeccchhHHHHhc----cCCCcceE
Confidence            6  333333322   2457777788555555533    34677764

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=99.50  E-value=4.6e-13  Score=121.85  Aligned_cols=161  Identities=14%  Similarity=0.231  Sum_probs=95.7

Q ss_pred             CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce-------------------EEEEEeecc
Q 026376           41 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-------------------RIAVFSQHH  101 (239)
Q Consensus        41 ~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-------------------~~~~~~q~~  101 (239)
                      +..+++++ |.+.+|++++|+|+||+|||||+++|+|+.+|+.|.|...+..                   .+.++.+. 
T Consensus       145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~-  222 (438)
T PRK07721        145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATS-  222 (438)
T ss_pred             chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECC-
Confidence            34588999 9999999999999999999999999999999999987643211                   01111110 


Q ss_pred             CCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCCh-HHHHH-HHHHHHhccCCCEEEEeCC--CCC
Q 026376          102 VDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSG-GQKSR-VAFAKITFKKPHIILLDEP--SNH  177 (239)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg-Gqkqr-v~laral~~~p~llllDEP--t~~  177 (239)
                            ...+...+...+   ..-.+.+++..-|-+- +  --..+|+- -|-+| +++           .+.||  |+|
T Consensus       223 ------~~~~~~r~~~~~---~a~~iAEyfr~~g~~V-l--l~~Dsltr~A~A~rEisl-----------~~ge~P~~~G  279 (438)
T PRK07721        223 ------DQPALMRIKGAY---TATAIAEYFRDQGLNV-M--LMMDSVTRVAMAQREIGL-----------AVGEPPTTKG  279 (438)
T ss_pred             ------CCCHHHHHHHHH---HHHHHHHHHHHCCCcE-E--EEEeChHHHHHHHHHHHH-----------hcCCCCcccc
Confidence                  000111110000   0011222222222210 0  01122221 11111 111           12364  789


Q ss_pred             CCHHHHHHHHHHHhhc-----CC-----EEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCCh
Q 026376          178 LDLDAVEALIQGLVLF-----QG-----GILMVSHDEHLISGSVEELWVVSEGKATPFHGTF  229 (239)
Q Consensus       178 LD~~~~~~l~~~l~~~-----~~-----tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~  229 (239)
                      +|+.....+.+.+.+.     |.     ||++.+||++.  .+||++..+.+|+++ .++..
T Consensus       280 ~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i~d~v~~i~dG~Iv-ls~~l  338 (438)
T PRK07721        280 YTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE--PIADTVRGILDGHFV-LDRQL  338 (438)
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc--hhhhhEEEecCEEEE-EeccH
Confidence            9999887776665443     32     89999999984  789999999999997 55544

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.49  E-value=7.9e-14  Score=115.66  Aligned_cols=49  Identities=16%  Similarity=0.219  Sum_probs=42.8

Q ss_pred             CCCCChH--HHHHHHHHHHhccCCCEEEEeCCC-----CCCCHHHHHHHHHHHhhc
Q 026376          145 MYTLSGG--QKSRVAFAKITFKKPHIILLDEPS-----NHLDLDAVEALIQGLVLF  193 (239)
Q Consensus       145 ~~~LSgG--qkqrv~laral~~~p~llllDEPt-----~~LD~~~~~~l~~~l~~~  193 (239)
                      .+..||+  |++++.|||+++.+|+++++||||     ++||+..++.+.+.+.+.
T Consensus       148 ~Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~  203 (215)
T PTZ00132        148 ISAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA  203 (215)
T ss_pred             EeCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence            3445555  999999999999999999999999     999999999998888764

>PRK01156 chromosome segregation protein; Provisional

Probab=99.49  E-value=2.3e-13  Score=134.65  Aligned_cols=75  Identities=29%  Similarity=0.455  Sum_probs=64.9

Q ss_pred             CCCCCCChHHHHHHHH------HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHh----hcC--CEEEEEecCHHHHhhh
Q 026376          143 QPMYTLSGGQKSRVAF------AKITFKKPHIILLDEPSNHLDLDAVEALIQGLV----LFQ--GGILMVSHDEHLISGS  210 (239)
Q Consensus       143 ~~~~~LSgGqkqrv~l------aral~~~p~llllDEPt~~LD~~~~~~l~~~l~----~~~--~tii~vsHd~~~~~~~  210 (239)
                      .++..|||||++|++|      |++++.+|++++|||||++||+.....+.+.+.    ..+  .+||+||||.+++. +
T Consensus       797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~-~  875 (895)
T PRK01156        797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLS-V  875 (895)
T ss_pred             CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHH-h
Confidence            4688999999999975      599999999999999999999999888877664    223  37999999999874 8


Q ss_pred             cCeEEEEe
Q 026376          211 VEELWVVS  218 (239)
Q Consensus       211 ~d~i~~l~  218 (239)
                      ||+++.+.
T Consensus       876 ~d~ii~~~  883 (895)
T PRK01156        876 ADVAYEVK  883 (895)
T ss_pred             cCeEEEEE
Confidence            99999987

>PRK03918 chromosome segregation protein; Provisional

Probab=99.47  E-value=1.3e-13  Score=135.95  Aligned_cols=76  Identities=29%  Similarity=0.447  Sum_probs=65.3

Q ss_pred             cCCCCCCChHHHH------HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcC
Q 026376          142 LQPMYTLSGGQKS------RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVE  212 (239)
Q Consensus       142 ~~~~~~LSgGqkq------rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d  212 (239)
                      .+++..|||||+|      |++||++++.+|+++||||||++||+..+..+.+.+..+   +.+||+||||.++. .+||
T Consensus       783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~-~~~d  861 (880)
T PRK03918        783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELK-DAAD  861 (880)
T ss_pred             cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH-HhCC
Confidence            3678899999999      556667888999999999999999999998888877553   45899999999865 5899


Q ss_pred             eEEEEe
Q 026376          213 ELWVVS  218 (239)
Q Consensus       213 ~i~~l~  218 (239)
                      ++++|.
T Consensus       862 ~~~~l~  867 (880)
T PRK03918        862 YVIRVS  867 (880)
T ss_pred             eEEEEE
Confidence            999997

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=99.47  E-value=5.1e-14  Score=117.06  Aligned_cols=64  Identities=27%  Similarity=0.482  Sum_probs=51.0

Q ss_pred             CCCCCChHHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHH
Q 026376          144 PMYTLSGGQKSRVAFAKITFKKP---HIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLI  207 (239)
Q Consensus       144 ~~~~LSgGqkqrv~laral~~~p---~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~  207 (239)
                      +...+|.|++|.+.|+.++...+   .++++|||-++|.|..+..+++.+.+.   +..||++||.+.++
T Consensus       233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il  302 (303)
T PF13304_consen  233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL  302 (303)
T ss_dssp             GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred             eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence            45678999999998888887765   999999999999999999999888654   35799999998765

>COG3910 Predicted ATPase [General function prediction only]

Probab=99.45  E-value=3.6e-12  Score=102.09  Aligned_cols=81  Identities=21%  Similarity=0.226  Sum_probs=63.1

Q ss_pred             cCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEe
Q 026376          142 LQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVS  218 (239)
Q Consensus       142 ~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~  218 (239)
                      .+.....|.||----.+.+.+ .+.-++|||||-++|.+.-+..++..|.+   .|..+||+||.+-.+.-=.-+|+.++
T Consensus       124 ~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~  202 (233)
T COG3910         124 GRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEIS  202 (233)
T ss_pred             CcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEe
Confidence            345678999998766666655 46689999999999999988777666654   46679999999977664457889998


Q ss_pred             CCeEE
Q 026376          219 EGKAT  223 (239)
Q Consensus       219 ~G~i~  223 (239)
                      .+.+.
T Consensus       203 ~~g~~  207 (233)
T COG3910         203 ESGIE  207 (233)
T ss_pred             cCCcc
Confidence            88764

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=99.45  E-value=5.9e-13  Score=107.63  Aligned_cols=78  Identities=17%  Similarity=0.069  Sum_probs=61.2

Q ss_pred             ccCCCCCCChHHHH------HHHHHHHhccCCCEEEEeCCCCCCC---HHHHHHH---HHHHhhcCCEEEEEecCHHH--
Q 026376          141 ALQPMYTLSGGQKS------RVAFAKITFKKPHIILLDEPSNHLD---LDAVEAL---IQGLVLFQGGILMVSHDEHL--  206 (239)
Q Consensus       141 ~~~~~~~LSgGqkq------rv~laral~~~p~llllDEPt~~LD---~~~~~~l---~~~l~~~~~tii~vsHd~~~--  206 (239)
                      .+.++..+|+|++|      +...+.+...+|+++++|||++.+|   ......+   ++.+++.+.|+|+++|+...  
T Consensus        65 ~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~  144 (187)
T cd01124          65 VDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEG  144 (187)
T ss_pred             EecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCC
Confidence            45677899999998      5555555678999999999999999   5544444   44555667899999998765  


Q ss_pred             -------HhhhcCeEEEEe
Q 026376          207 -------ISGSVEELWVVS  218 (239)
Q Consensus       207 -------~~~~~d~i~~l~  218 (239)
                             +..+||.++.|+
T Consensus       145 ~~~~~~~~~~~aD~ii~l~  163 (187)
T cd01124         145 TGFGGGDVEYLVDGVIRLR  163 (187)
T ss_pred             cccCcCceeEeeeEEEEEE
Confidence                   678899999987

A related protein is found in archaea.

>TIGR00606 rad50 rad50

Probab=99.45  E-value=2.6e-13  Score=138.60  Aligned_cols=75  Identities=32%  Similarity=0.424  Sum_probs=64.1

Q ss_pred             CCCCCChHHHH------HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--------CCEEEEEecCHHHHhh
Q 026376          144 PMYTLSGGQKS------RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--------QGGILMVSHDEHLISG  209 (239)
Q Consensus       144 ~~~~LSgGqkq------rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--------~~tii~vsHd~~~~~~  209 (239)
                      ..+.|||||||      |++||+|++.+|++|+|||||++||+.+...+.+.|...        +.+||+||||++++..
T Consensus      1196 ~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~ 1275 (1311)
T TIGR00606      1196 MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVEL 1275 (1311)
T ss_pred             CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHH
Confidence            44799999999      999999999999999999999999999988777665432        4689999999999988


Q ss_pred             hc-----CeEEEEe
Q 026376          210 SV-----EELWVVS  218 (239)
Q Consensus       210 ~~-----d~i~~l~  218 (239)
                      +|     +++|-+.
T Consensus      1276 ~~~~~~~~~~~~~~ 1289 (1311)
T TIGR00606      1276 LGRSEYVEKFYRLK 1289 (1311)
T ss_pred             Hhhccccceeeeee
Confidence            75     5666553

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=99.42  E-value=5.8e-13  Score=133.28  Aligned_cols=78  Identities=23%  Similarity=0.213  Sum_probs=69.9

Q ss_pred             cCCCCCCChHHHHHHHHHHHhcc--------CCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhh
Q 026376          142 LQPMYTLSGGQKSRVAFAKITFK--------KPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGS  210 (239)
Q Consensus       142 ~~~~~~LSgGqkqrv~laral~~--------~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~  210 (239)
                      .+++.+|||||+++++||+||+.        +|++||+||||++||+.+...+++.|..   .|.+|+||||..++..++
T Consensus       944 ~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i 1023 (1047)
T PRK10246        944 VRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERI 1023 (1047)
T ss_pred             CCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhc
Confidence            47899999999999999999995        8999999999999999998888776644   467999999999999999


Q ss_pred             cCeEEEEeC
Q 026376          211 VEELWVVSE  219 (239)
Q Consensus       211 ~d~i~~l~~  219 (239)
                      ..+|.|-..
T Consensus      1024 ~~qi~V~k~ 1032 (1047)
T PRK10246       1024 PVQIKVKKI 1032 (1047)
T ss_pred             cceEEEEEC
Confidence            999988865

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.40  E-value=2.9e-12  Score=121.19  Aligned_cols=103  Identities=26%  Similarity=0.296  Sum_probs=85.3

Q ss_pred             HHhcCCCcccccCCCCCCChHHHHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHHH---hhcCCEEEEEecCHH
Q 026376          131 LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK--PHIILLDEPSNHLDLDAVEALIQGL---VLFQGGILMVSHDEH  205 (239)
Q Consensus       131 l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~--p~llllDEPt~~LD~~~~~~l~~~l---~~~~~tii~vsHd~~  205 (239)
                      |-.+||...-.+|...+|||||.||+.||.-+-+.  -=+++||||+.||-+.....+++.|   ++.|.|+|+|.||.+
T Consensus       465 L~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDed  544 (935)
T COG0178         465 LVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDED  544 (935)
T ss_pred             HHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHH
Confidence            44567765556788999999999999999999765  5688999999999998877776655   456789999999999


Q ss_pred             HHhhhcCeEEEEe------CCeEEeeCCChhHHHHH
Q 026376          206 LISGSVEELWVVS------EGKATPFHGTFHDYKKM  235 (239)
Q Consensus       206 ~~~~~~d~i~~l~------~G~i~~~~g~~~~~~~~  235 (239)
                      .+. .||+++-|-      .|+|+ +.|+++++.+.
T Consensus       545 ti~-~AD~iIDiGPgAG~~GGeIv-~~Gtp~~i~~~  578 (935)
T COG0178         545 TIR-AADHIIDIGPGAGEHGGEIV-AEGTPEELLAN  578 (935)
T ss_pred             HHh-hcCEEEeeCCCCCcCCCEEE-EccCHHHHHhC
Confidence            987 699999984      46676 89999998754

>PRK00064 recF recombination protein F; Reviewed

Probab=99.38  E-value=1.4e-12  Score=116.51  Aligned_cols=78  Identities=22%  Similarity=0.259  Sum_probs=69.3

Q ss_pred             CCCCChHHHHHHHHHHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhc--Ce
Q 026376          145 MYTLSGGQKSRVAFAKITF---------KKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSV--EE  213 (239)
Q Consensus       145 ~~~LSgGqkqrv~laral~---------~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~--d~  213 (239)
                      ...+|.||+|+++||++|+         .+|+|||||||+++||+..+..+.+.+.+.+..++++||+.+.+...+  ++
T Consensus       271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~~~qv~it~~~~~~~~~~~~~~~  350 (361)
T PRK00064        271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGLGAQVFITTTDLEDLADLLENAK  350 (361)
T ss_pred             HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhccCCEEEEEcCChhhhhhhhccCc
Confidence            4689999999999999986         799999999999999999999999999776668999999988776664  57


Q ss_pred             EEEEeCCeE
Q 026376          214 LWVVSEGKA  222 (239)
Q Consensus       214 i~~l~~G~i  222 (239)
                      ++.+++|++
T Consensus       351 i~~v~~G~i  359 (361)
T PRK00064        351 IFHVEQGKI  359 (361)
T ss_pred             EEEEeCCEE
Confidence            999999987

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.37  E-value=9.8e-13  Score=132.69  Aligned_cols=76  Identities=28%  Similarity=0.371  Sum_probs=65.6

Q ss_pred             cCCCCCCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEE
Q 026376          142 LQPMYTLSGGQKSRVAFAKITF----KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELW  215 (239)
Q Consensus       142 ~~~~~~LSgGqkqrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~  215 (239)
                      +.++..|||||++|++||++++    .+|+++||||||++||+.+...+.+.+...  +.+||||||++.++. +||+++
T Consensus      1084 ~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~-~~d~~~ 1162 (1179)
T TIGR02168      1084 NQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTME-VADQLY 1162 (1179)
T ss_pred             cccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHH-HhhhHe
Confidence            4577899999999999999984    678999999999999999999888877654  358999999999874 799998


Q ss_pred             EEe
Q 026376          216 VVS  218 (239)
Q Consensus       216 ~l~  218 (239)
                      .+.
T Consensus      1163 ~~~ 1165 (1179)
T TIGR02168      1163 GVT 1165 (1179)
T ss_pred             eee
Confidence            653

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=99.32  E-value=3.3e-12  Score=111.87  Aligned_cols=143  Identities=17%  Similarity=0.174  Sum_probs=90.3

Q ss_pred             eeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHH
Q 026376           48 LNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKL  127 (239)
Q Consensus        48 isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (239)
                      +++.+..|+.++|+||+|||||||+++|++++++..|.+.+..          .. .+.+..          +.      
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied----------~~-El~~~~----------~~------  189 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED----------TR-EIFLPH----------PN------  189 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC----------cc-ccCCCC----------CC------
Confidence            4577889999999999999999999999999998877654321          11 011100          00      


Q ss_pred             HHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCC-EEEEEecCHHH
Q 026376          128 RAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQG-GILMVSHDEHL  206 (239)
Q Consensus       128 ~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-tii~vsHd~~~  206 (239)
                           .+.+............|-    .-.++.+|-.+|+++++|||.+   .+ ...+++.+. .+. +++.++|..+.
T Consensus       190 -----~~~l~~~~~~~~~~~~~~----~~~l~~~Lr~~pd~ii~gE~r~---~e-~~~~l~a~~-~g~~~~i~T~Ha~~~  255 (308)
T TIGR02788       190 -----YVHLFYSKGGQGLAKVTP----KDLLQSCLRMRPDRIILGELRG---DE-AFDFIRAVN-TGHPGSITTLHAGSP  255 (308)
T ss_pred             -----EEEEEecCCCCCcCccCH----HHHHHHHhcCCCCeEEEeccCC---HH-HHHHHHHHh-cCCCeEEEEEeCCCH
Confidence                 000000000000111222    2367778889999999999996   22 234455554 344 57999999985


Q ss_pred             HhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          207 ISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       207 ~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      . ...+|+..|..|++. ..|.+.++.
T Consensus       256 ~-~~~~Rl~~l~~~~~~-~~g~~~~~~  280 (308)
T TIGR02788       256 E-EAFEQLALMVKSSQA-GLGLDFAYI  280 (308)
T ss_pred             H-HHHHHHHHHhhcccc-ccCCCHHHH
Confidence            5 458999988888875 345555544

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.30  E-value=5.7e-12  Score=93.03  Aligned_cols=43  Identities=12%  Similarity=0.132  Sum_probs=38.8

Q ss_pred             CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecC
Q 026376           42 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA   90 (239)
Q Consensus        42 ~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~   90 (239)
                      ..+|++++|++++|++++|+||||||||||++++.      +|++.+.+
T Consensus         2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g   44 (107)
T cd00820           2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVG   44 (107)
T ss_pred             ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEee
Confidence            45899999999999999999999999999999986      77887655

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.28  E-value=8.9e-12  Score=125.98  Aligned_cols=76  Identities=24%  Similarity=0.190  Sum_probs=66.2

Q ss_pred             CCCCCCChHHHHHHHHHHHhcc----CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEE
Q 026376          143 QPMYTLSGGQKSRVAFAKITFK----KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWV  216 (239)
Q Consensus       143 ~~~~~LSgGqkqrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~  216 (239)
                      +++..||||||++++||++|+.    .|+++|||||+++||+..+..+.+.|...  +.++|+|||+...+ .+||+++.
T Consensus      1070 ~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~-~~~d~~~~ 1148 (1164)
T TIGR02169      1070 QRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMI-EYADRAIG 1148 (1164)
T ss_pred             CcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHH-HhcceeEe
Confidence            4567899999999999999984    78999999999999999999998888765  34799999999866 68999987


Q ss_pred             EeC
Q 026376          217 VSE  219 (239)
Q Consensus       217 l~~  219 (239)
                      +..
T Consensus      1149 ~~~ 1151 (1164)
T TIGR02169      1149 VTM 1151 (1164)
T ss_pred             EEE
Confidence            753

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=99.27  E-value=2.4e-11  Score=95.11  Aligned_cols=127  Identities=16%  Similarity=0.102  Sum_probs=74.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV  136 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  136 (239)
                      +++|.|+||+|||||++.+++...+..|.+        .|+..+..      ...........      ......+.+. 
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v--------~~~~~e~~------~~~~~~~~~~~------~~~~~~~~~~-   59 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKV--------VYVDIEEE------IEELTERLIGE------SLKGALDNLI-   59 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhcCCEE--------EEEECCcc------hHHHHHHHhhh------hhccccccEE-
Confidence            478999999999999999999887755554        33333211      01111100000      0000011111 


Q ss_pred             CcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH----------HHHHHH---HHHHhhcCCEEEEEecC
Q 026376          137 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL----------DAVEAL---IQGLVLFQGGILMVSHD  203 (239)
Q Consensus       137 ~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~----------~~~~~l---~~~l~~~~~tii~vsHd  203 (239)
                         .........+..+.++.+.+++...+|+++++|||++-++.          .....+   .+..++.+.++|+++|.
T Consensus        60 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~  136 (165)
T cd01120          60 ---IVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQV  136 (165)
T ss_pred             ---EEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEec
Confidence               11122234456667788899999999999999999965443          333333   33334456799999997


Q ss_pred             HHHH
Q 026376          204 EHLI  207 (239)
Q Consensus       204 ~~~~  207 (239)
                      ....
T Consensus       137 ~~~~  140 (165)
T cd01120         137 PSGD  140 (165)
T ss_pred             CCcc
Confidence            7544

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=99.25  E-value=1.8e-10  Score=112.87  Aligned_cols=61  Identities=16%  Similarity=0.126  Sum_probs=50.9

Q ss_pred             ccCCCEEEEeCCCCCC-CHHHHHHHHHHHh---hcCCEEEEEecCHHHHh---------hhcCeEEEEeCCeEE
Q 026376          163 FKKPHIILLDEPSNHL-DLDAVEALIQGLV---LFQGGILMVSHDEHLIS---------GSVEELWVVSEGKAT  223 (239)
Q Consensus       163 ~~~p~llllDEPt~~L-D~~~~~~l~~~l~---~~~~tii~vsHd~~~~~---------~~~d~i~~l~~G~i~  223 (239)
                      ..+|.++++|||+.+| |+.....+.+.++   +.+.++|++||+++.+.         ..|++.++|.+|++.
T Consensus       650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~  723 (818)
T PRK13830        650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAR  723 (818)
T ss_pred             CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCcccc
Confidence            5799999999999999 6777776666554   45779999999998875         579999999999874

>PRK02224 chromosome segregation protein; Provisional

Probab=99.25  E-value=1.4e-11  Score=121.71  Aligned_cols=76  Identities=30%  Similarity=0.475  Sum_probs=64.0

Q ss_pred             CCCCCChHHHH------HHHHHHHhccC-----C-CEEEEeCCCCCCCHHHHHHHHHHHhhc---CC-EEEEEecCHHHH
Q 026376          144 PMYTLSGGQKS------RVAFAKITFKK-----P-HIILLDEPSNHLDLDAVEALIQGLVLF---QG-GILMVSHDEHLI  207 (239)
Q Consensus       144 ~~~~LSgGqkq------rv~laral~~~-----p-~llllDEPt~~LD~~~~~~l~~~l~~~---~~-tii~vsHd~~~~  207 (239)
                      ++..||||||+      |+++|++++.+     | +++||||||++||+..+..+.+.|...   +. +||+||||.+++
T Consensus       778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~  857 (880)
T PRK02224        778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELV  857 (880)
T ss_pred             ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHH
Confidence            46799999999      89999998863     2 679999999999999988887766543   33 799999999998


Q ss_pred             hhhcCeEEEEeCC
Q 026376          208 SGSVEELWVVSEG  220 (239)
Q Consensus       208 ~~~~d~i~~l~~G  220 (239)
                      . .||+++.|...
T Consensus       858 ~-~ad~~~~~~~~  869 (880)
T PRK02224        858 G-AADDLVRVEKD  869 (880)
T ss_pred             H-hcCeeEEeecC
Confidence            6 69999999644

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=99.23  E-value=1.7e-10  Score=97.10  Aligned_cols=149  Identities=18%  Similarity=0.226  Sum_probs=87.4

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHh-cCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHH--
Q 026376           51 GIDLDSRIAMVGPNGIGKSTILKLIA-GELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKL--  127 (239)
Q Consensus        51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~-Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  127 (239)
                      =+.+|.++.|.|++|||||||...++ +..+  .|+       .+.|+..+..    . ......+ ..+ +.+....  
T Consensus        21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~--~g~-------~~~y~~~e~~----~-~~~~~~~-~~~-g~~~~~~~~   84 (234)
T PRK06067         21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK--QGK-------KVYVITTENT----S-KSYLKQM-ESV-KIDISDFFL   84 (234)
T ss_pred             CCcCCcEEEEECCCCCChHHHHHHHHHHHHh--CCC-------EEEEEEcCCC----H-HHHHHHH-HHC-CCChhHHHh
Confidence            47789999999999999999998874 3222  121       2333332210    0 0111111 111 1111110  


Q ss_pred             HHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc--CCCEEEEeCCCCC---CCHHHHHHHHHHH---hhcCCEEEE
Q 026376          128 RAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK--KPHIILLDEPSNH---LDLDAVEALIQGL---VLFQGGILM  199 (239)
Q Consensus       128 ~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~--~p~llllDEPt~~---LD~~~~~~l~~~l---~~~~~tii~  199 (239)
                      ...+..+..    .-......|.++++.+..++.++.  +|+++++||||+.   .|......+++.+   ++.+.|+++
T Consensus        85 ~g~l~i~~~----~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvll  160 (234)
T PRK06067         85 WGYLRIFPL----NTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILI  160 (234)
T ss_pred             CCCceEEec----cccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence            001111111    011234567888999999998887  9999999999965   4454444554434   455679999


Q ss_pred             EecCHHH-------HhhhcCeEEEEeC
Q 026376          200 VSHDEHL-------ISGSVEELWVVSE  219 (239)
Q Consensus       200 vsHd~~~-------~~~~~d~i~~l~~  219 (239)
                      ++|+..+       +..++|-++.|+.
T Consensus       161 t~~~~~~~~~~~~~~~~l~DgvI~L~~  187 (234)
T PRK06067        161 TLHPYAFSEELLSRIRSICDVYLKLRA  187 (234)
T ss_pred             EecCCcCCHHHHHHHHhheEEEEEEEe
Confidence            9997654       5567788887763

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=99.16  E-value=2.8e-11  Score=109.98  Aligned_cols=47  Identities=28%  Similarity=0.364  Sum_probs=42.9

Q ss_pred             ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCce-eEEecCc
Q 026376           43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG-TVFRSAK   91 (239)
Q Consensus        43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G-~i~~~~~   91 (239)
                      .+|++|||++.+||+++|+|||||||||||+  +|+..|++| +|.+++.
T Consensus        20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~   67 (504)
T TIGR03238        20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDAT   67 (504)
T ss_pred             HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCE
Confidence            4799999999999999999999999999999  788888888 7988763

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>TIGR00611 recf recF protein

Probab=99.15  E-value=1e-10  Score=104.67  Aligned_cols=63  Identities=21%  Similarity=0.149  Sum_probs=57.9

Q ss_pred             CCCChHHHHHHHHHHHhcc---------CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHh
Q 026376          146 YTLSGGQKSRVAFAKITFK---------KPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLIS  208 (239)
Q Consensus       146 ~~LSgGqkqrv~laral~~---------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~  208 (239)
                      ..+|.||+++++||.+|+.         +|+|||||||+++||+..+..+++.+.+.+.+|+++||+.+.+.
T Consensus       274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~~~qv~it~~~~~~~~  345 (365)
T TIGR00611       274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSLGVQVFVTAISLDHLK  345 (365)
T ss_pred             HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhcCCEEEEEecChhhcc
Confidence            3699999999999999999         99999999999999999999999999766679999999987655

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd01131 PilT Pilus retraction ATPase PilT

Probab=99.12  E-value=4e-10  Score=92.61  Aligned_cols=118  Identities=15%  Similarity=0.248  Sum_probs=72.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCC-ceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQPS-SGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFG  135 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~p~-~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  135 (239)
                      ++.|.||+||||||+++.|++.+.+. .|.|....         ++....             .... .    .......
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e---------~~~E~~-------------~~~~-~----~~i~q~~   55 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIE---------DPIEFV-------------HESK-R----SLINQRE   55 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEc---------CCcccc-------------ccCc-c----ceeeecc
Confidence            78999999999999999998887643 45543211         111000             0000 0    0000000


Q ss_pred             CCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEE
Q 026376          136 VTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELW  215 (239)
Q Consensus       136 l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~  215 (239)
                      +.     .....++.      +++++|..+|+++++|||.   |.+....+++.. ..+..++.++|..+... ..+|++
T Consensus        56 vg-----~~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~~l~~a-~~G~~v~~t~Ha~~~~~-~~~Rl~  119 (198)
T cd01131          56 VG-----LDTLSFEN------ALKAALRQDPDVILVGEMR---DLETIRLALTAA-ETGHLVMSTLHTNSAAK-TIDRII  119 (198)
T ss_pred             cC-----CCccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHHHHHHH-HcCCEEEEEecCCcHHH-HHhHHH
Confidence            00     00112222      6889999999999999996   777766666544 45778999999887654 466765


Q ss_pred             EE
Q 026376          216 VV  217 (239)
Q Consensus       216 ~l  217 (239)
                      .+
T Consensus       120 ~l  121 (198)
T cd01131         120 DV  121 (198)
T ss_pred             hh
Confidence            54

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=99.10  E-value=4.8e-09  Score=79.10  Aligned_cols=115  Identities=24%  Similarity=0.297  Sum_probs=75.1

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcCCCc-eeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHH
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGELQPSS-GTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG  132 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~-G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  132 (239)
                      .+..+.|+||+|+||||+++.|+..+.... +-++....         .    ..........                 
T Consensus         1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~---------~----~~~~~~~~~~-----------------   50 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGE---------D----ILEEVLDQLL-----------------   50 (148)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCE---------E----ccccCHHHHH-----------------
Confidence            367899999999999999999999887654 22221110         0    0000000000                 


Q ss_pred             hcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH---------HHhhcCCEEEEEecC
Q 026376          133 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ---------GLVLFQGGILMVSHD  203 (239)
Q Consensus       133 ~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~---------~l~~~~~tii~vsHd  203 (239)
                        .   ..........++++..+..++++-...|.++++||+..-.+.........         ........+|+++|.
T Consensus        51 --~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  125 (148)
T smart00382       51 --L---IIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND  125 (148)
T ss_pred             --h---hhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence              0   01122335678888999999999888899999999999999887654432         112224578888884

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=99.05  E-value=6.1e-10  Score=110.52  Aligned_cols=77  Identities=29%  Similarity=0.389  Sum_probs=64.1

Q ss_pred             cCCCCCCChHHHHHHHHHHHhc------cC--CCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhh
Q 026376          142 LQPMYTLSGGQKSRVAFAKITF------KK--PHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGS  210 (239)
Q Consensus       142 ~~~~~~LSgGqkqrv~laral~------~~--p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~  210 (239)
                      .+++.+|||||+-.++||-+|+      .+  -++|+|||||.+||++....+++.|...   +.+|+||||+.++.. .
T Consensus       810 ~r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e-~  888 (908)
T COG0419         810 VRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKE-R  888 (908)
T ss_pred             ccccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHH-h
Confidence            3688999999999887777664      45  7999999999999999999887777543   569999999999986 5


Q ss_pred             cCeEEEEeC
Q 026376          211 VEELWVVSE  219 (239)
Q Consensus       211 ~d~i~~l~~  219 (239)
                      +|.++.++.
T Consensus       889 ~~~~i~V~k  897 (908)
T COG0419         889 ADVRIRVKK  897 (908)
T ss_pred             CCeEEEEEe
Confidence            788887754

>PRK14079 recF recombination protein F; Provisional

Probab=99.04  E-value=6.6e-10  Score=98.97  Aligned_cols=75  Identities=20%  Similarity=0.185  Sum_probs=62.3

Q ss_pred             CCCChHHHHHHHHHHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEE
Q 026376          146 YTLSGGQKSRVAFAKITF---------KKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWV  216 (239)
Q Consensus       146 ~~LSgGqkqrv~laral~---------~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~  216 (239)
                      ..+|+||++++++|..|+         .+|+++|||||+++||...+.++.+.+.....++|-+| +   ....|++++.
T Consensus       262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~q~~it~t-~---~~~~~~~~~~  337 (349)
T PRK14079        262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLPQAIVAGT-E---APPGAALTLR  337 (349)
T ss_pred             HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCCcEEEEcC-C---CCCCCceEEE
Confidence            468999999999999998         89999999999999999999999998865443333333 3   3457899999


Q ss_pred             EeCCeEEe
Q 026376          217 VSEGKATP  224 (239)
Q Consensus       217 l~~G~i~~  224 (239)
                      +++|++..
T Consensus       338 ~~~~~~~~  345 (349)
T PRK14079        338 IEAGVFTP  345 (349)
T ss_pred             EeccEecC
Confidence            99998863

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=99.04  E-value=1.3e-09  Score=107.01  Aligned_cols=135  Identities=18%  Similarity=0.161  Sum_probs=86.6

Q ss_pred             ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCc-CCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCC
Q 026376           43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL-QPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPG  121 (239)
Q Consensus        43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~-~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~  121 (239)
                      .+-+|+++. ..+.++.|.|||.+||||+||.++-.. -..-|.          |+|-... .+    ..          
T Consensus       596 ~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~----------~VPa~~a-~i----~~----------  649 (854)
T PRK05399        596 FVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIGS----------FVPAESA-RI----GI----------  649 (854)
T ss_pred             eEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCC----------ceeccce-Ee----cc----------
Confidence            455777777 667899999999999999999986431 111121          1111100 00    00          


Q ss_pred             CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc--CCCEEEEeCC---CCCCCHHHH-HHHHHHHhhcC-
Q 026376          122 VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK--KPHIILLDEP---SNHLDLDAV-EALIQGLVLFQ-  194 (239)
Q Consensus       122 ~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~--~p~llllDEP---t~~LD~~~~-~~l~~~l~~~~-  194 (239)
                           +..++.++|-.+.    ....+|-=+.....++.+|-.  ++.++|+|||   |+.+|..+. ..+++.+.+.. 
T Consensus       650 -----~d~I~triga~d~----i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~  720 (854)
T PRK05399        650 -----VDRIFTRIGASDD----LASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIG  720 (854)
T ss_pred             -----cCeeeeccCcccc----cccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCC
Confidence                 0011223343322    235677777777777777654  8999999999   999997764 34788887764 


Q ss_pred             CEEEEEecCHHHHhhhcCe
Q 026376          195 GGILMVSHDEHLISGSVEE  213 (239)
Q Consensus       195 ~tii~vsHd~~~~~~~~d~  213 (239)
                      .++|++||..+.. .++++
T Consensus       721 ~~~l~aTH~~el~-~l~~~  738 (854)
T PRK05399        721 AKTLFATHYHELT-ELEEK  738 (854)
T ss_pred             ceEEEEechHHHH-HHhhh
Confidence            6899999996554 45654

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=99.01  E-value=1.6e-09  Score=98.51  Aligned_cols=62  Identities=21%  Similarity=0.322  Sum_probs=55.9

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEe
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR   88 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~   88 (239)
                      ...++.++++..|..+..+++.++ .|.+|++++|+|+||||||||+++|+++.+|+.|.|..
T Consensus       137 p~~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~l  198 (450)
T PRK06002        137 PPAMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIAL  198 (450)
T ss_pred             CCCeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeee
Confidence            346899999999976667888885 99999999999999999999999999999999998865

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=99.01  E-value=1.5e-09  Score=88.84  Aligned_cols=109  Identities=22%  Similarity=0.234  Sum_probs=68.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHH-h--C-CCCcHHHHHHHHH
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR-C--F-PGVPEQKLRAHLG  132 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~-~--~-~~~~~~~~~~~l~  132 (239)
                      +++|+||||||||||.++|++++  ..|.+        .++.++.+. ............. .  . ...+.+...+.+.
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~--------~v~~~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   69 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKV--------VIISQDSYY-KDLSHEELEERKNNNYDHPDAFDFDLLISHLQ   69 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh--CCCCe--------EEEEecccc-cccccccHHHhccCCCCCCCcccHHHHHHHHH
Confidence            58999999999999999999987  23333        233333211 0011111111000 0  0 1123345556676


Q ss_pred             hcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 026376          133 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL  180 (239)
Q Consensus       133 ~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~  180 (239)
                      .+.... ....|..+.|.|++++..+   .+..++++|+|.|+.+.++
T Consensus        70 ~l~~~~-~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~  113 (198)
T cd02023          70 DLKNGK-SVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK  113 (198)
T ss_pred             HHHCCC-CEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence            666543 3467888999999877655   5788999999999999986

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=98.98  E-value=8.6e-09  Score=94.12  Aligned_cols=49  Identities=24%  Similarity=0.408  Sum_probs=42.7

Q ss_pred             cCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEE
Q 026376           38 YPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF   87 (239)
Q Consensus        38 y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~   87 (239)
                      |..+..+++++ |.+.+|++++|+|+||+|||||+++|+|...++.|.+.
T Consensus       147 l~TGi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~  195 (440)
T TIGR01026       147 LSTGVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIA  195 (440)
T ss_pred             ccceeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEE
Confidence            43345688999 99999999999999999999999999999999877553

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=98.96  E-value=1.2e-09  Score=111.82  Aligned_cols=66  Identities=27%  Similarity=0.269  Sum_probs=57.8

Q ss_pred             cCCCCCCChHHHHHHH----HHHH--------hccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHH
Q 026376          142 LQPMYTLSGGQKSRVA----FAKI--------TFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLI  207 (239)
Q Consensus       142 ~~~~~~LSgGqkqrv~----lara--------l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~  207 (239)
                      ++.++.|||||||+++    +|++        +..+|++++|||||++||+.++..+++.+.+++.++||+||++.-.
T Consensus      1242 ~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l~~~~i~~s~~~Wg~ 1319 (1353)
T TIGR02680      1242 THRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRALDLDFVMTSEREWGC 1319 (1353)
T ss_pred             hccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHhCCCEEEEccchhcc
Confidence            3456899999999996    5655        5589999999999999999999999999999988999999987644

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.92  E-value=3.1e-09  Score=97.72  Aligned_cols=167  Identities=17%  Similarity=0.204  Sum_probs=90.4

Q ss_pred             eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhC--C-
Q 026376           44 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCF--P-  120 (239)
Q Consensus        44 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~--~-  120 (239)
                      ++++.++.+.+|.+++++||||+||||++..|++.+....|..      +++++.++.+. ... ...+..+...+  + 
T Consensus       245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~------kV~LI~~Dt~R-igA-~EQLr~~AeilGVpv  316 (484)
T PRK06995        245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS------KVALLTTDSYR-IGG-HEQLRIYGKILGVPV  316 (484)
T ss_pred             hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC------eEEEEeCCccc-hhH-HHHHHHHHHHhCCCe
Confidence            4556777788999999999999999999999999887776642      46777776521 110 01111222211  1 


Q ss_pred             CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHH-HHHHHHhccCC-----CEEEEeCCCCCCCHHHHHHHHHHHhhcC
Q 026376          121 GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR-VAFAKITFKKP-----HIILLDEPSNHLDLDAVEALIQGLVLFQ  194 (239)
Q Consensus       121 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr-v~laral~~~p-----~llllDEPt~~LD~~~~~~l~~~l~~~~  194 (239)
                      ..............++.+ .....+.+...+++.. +.-+.+++.++     .+|+||.++.+-+.   .++.+.++..+
T Consensus       317 ~~~~~~~Dl~~aL~~L~d-~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l---~~i~~~f~~~~  392 (484)
T PRK06995        317 HAVKDAADLRLALSELRN-KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTL---NEVVQAYRGPG  392 (484)
T ss_pred             eccCCchhHHHHHHhccC-CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHH---HHHHHHhccCC
Confidence            011112222333444443 2234556644444322 23333344443     78999999988443   33444444444


Q ss_pred             CEEEEEec-C--------HHHHhhhcCeEEEEeCCeE
Q 026376          195 GGILMVSH-D--------EHLISGSVEELWVVSEGKA  222 (239)
Q Consensus       195 ~tii~vsH-d--------~~~~~~~~d~i~~l~~G~i  222 (239)
                      .+-+|.|+ |        ++.+.+..=-|..+..|+-
T Consensus       393 ~~g~IlTKlDet~~~G~~l~i~~~~~lPI~yvt~GQ~  429 (484)
T PRK06995        393 LAGCILTKLDEAASLGGALDVVIRYKLPLHYVSNGQR  429 (484)
T ss_pred             CCEEEEeCCCCcccchHHHHHHHHHCCCeEEEecCCC
Confidence            44444454 2        1222223334677777764

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=98.91  E-value=4.6e-09  Score=88.66  Aligned_cols=43  Identities=26%  Similarity=0.430  Sum_probs=32.7

Q ss_pred             HhccCCCEEEEeCCCCC------CCHHHHHHHHHHHh----hcCCEEEEEecCH
Q 026376          161 ITFKKPHIILLDEPSNH------LDLDAVEALIQGLV----LFQGGILMVSHDE  204 (239)
Q Consensus       161 al~~~p~llllDEPt~~------LD~~~~~~l~~~l~----~~~~tii~vsHd~  204 (239)
                      +...+|+++++| |++.      +|+.....+++.|.    +.+.+||+++|..
T Consensus       107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~  159 (239)
T cd01125         107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR  159 (239)
T ss_pred             HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence            345799999999 8764      68877777666553    3467999999976

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>COG4637 Predicted ATPase [General function prediction only]

Probab=98.90  E-value=3.7e-08  Score=84.86  Aligned_cols=72  Identities=25%  Similarity=0.345  Sum_probs=61.3

Q ss_pred             CCCChHHHHHHHHHHHhcc--CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCC--EEEEEecCHHHHhhhcCeEEEE
Q 026376          146 YTLSGGQKSRVAFAKITFK--KPHIILLDEPSNHLDLDAVEALIQGLVLFQG--GILMVSHDEHLISGSVEELWVV  217 (239)
Q Consensus       146 ~~LSgGqkqrv~laral~~--~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--tii~vsHd~~~~~~~~d~i~~l  217 (239)
                      ..||-|+.+-+++|.+|.+  .|.+++||||-++|-|.....+...+++..+  -||++||..+++..+--+-++.
T Consensus       269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~sQv~VsTHS~rLl~~~e~~~v~~  344 (373)
T COG4637         269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQVIVSTHSPRLLNAVEEHSVFW  344 (373)
T ss_pred             hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccceEEEEeCCHHHHhhccccceEE
Confidence            4899999999999999986  6999999999999999998888888876543  6999999999988765444433

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=98.85  E-value=2.9e-11  Score=112.03  Aligned_cols=148  Identities=15%  Similarity=0.174  Sum_probs=83.4

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHH--hcCcCCCceeEEecCc----------eEEEEEeeccCCCCCCCCcHHHHHHHh
Q 026376           51 GIDLDSRIAMVGPNGIGKSTILKLI--AGELQPSSGTVFRSAK----------VRIAVFSQHHVDGLDLSSNPLLYMMRC  118 (239)
Q Consensus        51 ~i~~Ge~~~iiG~NGsGKSTLl~~l--~Gl~~p~~G~i~~~~~----------~~~~~~~q~~~~~~~~~~~~~~~~~~~  118 (239)
                      =+.+|..+.|.|++|||||||...+  .|..++.+.-+++...          ..+||-.+.....-        .+ ..
T Consensus        17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g--------~l-~~   87 (484)
T TIGR02655        17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDEG--------KL-FI   87 (484)
T ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcC--------ce-EE
Confidence            3678999999999999999998765  4555433333332110          01111111100000        00 00


Q ss_pred             CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHH--HHhccCCCEEEEeCCCCCCCHHHHHH---HHHHHhhc
Q 026376          119 FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFA--KITFKKPHIILLDEPSNHLDLDAVEA---LIQGLVLF  193 (239)
Q Consensus       119 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la--ral~~~p~llllDEPt~~LD~~~~~~---l~~~l~~~  193 (239)
                      ...........+++.+++.. ..++....+|+|++|||.|+  .+|...|+..          ...+..   +++.+++.
T Consensus        88 ~~~~~~~~~~~~~~~~~l~~-~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~  156 (484)
T TIGR02655        88 LDASPDPEGQDVVGGFDLSA-LIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQI  156 (484)
T ss_pred             EecCchhccccccccCCHHH-HHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHC
Confidence            00000001112233445432 34556678999999999999  5565555443          233333   44555666


Q ss_pred             CCEEEEEecCHHH---------HhhhcCeEEEEe
Q 026376          194 QGGILMVSHDEHL---------ISGSVEELWVVS  218 (239)
Q Consensus       194 ~~tii~vsHd~~~---------~~~~~d~i~~l~  218 (239)
                      +.|+|++||+.+.         ...+||.|+.|+
T Consensus       157 g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~  190 (484)
T TIGR02655       157 GVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR  190 (484)
T ss_pred             CCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence            7899999998764         266899999886

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PLN03210 Resistant to P

Probab=98.85  E-value=2.1e-08  Score=101.94  Aligned_cols=142  Identities=20%  Similarity=0.363  Sum_probs=78.6

Q ss_pred             eeEEEeCCCEEEEECCCCCcHHHHHHHHhcCc-CCCceeEEecCceEEEEEeecc--CCCCCCCC-cHHHHHHHhCCCCc
Q 026376           48 LNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL-QPSSGTVFRSAKVRIAVFSQHH--VDGLDLSS-NPLLYMMRCFPGVP  123 (239)
Q Consensus        48 isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~-~p~~G~i~~~~~~~~~~~~q~~--~~~~~~~~-~~~~~~~~~~~~~~  123 (239)
                      +++....+++++|+|++|+|||||++++++.+ ...+|.++++..    ++.+..  ........ .....+       .
T Consensus       200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~----~v~~~~~~~~~~~~~~~~~~~~l-------~  268 (1153)
T PLN03210        200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA----FISKSMEIYSSANPDDYNMKLHL-------Q  268 (1153)
T ss_pred             HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc----ccccchhhcccccccccchhHHH-------H
Confidence            46778889999999999999999999996654 445777765431    111100  00000000 000000       1


Q ss_pred             HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEE
Q 026376          124 EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMV  200 (239)
Q Consensus       124 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~v  200 (239)
                      .+.+.++++..++       .+..+ ++.++|      |..++-+|+||+-    |.......+....++   |.+||++
T Consensus       269 ~~~l~~il~~~~~-------~~~~~-~~~~~~------L~~krvLLVLDdv----~~~~~l~~L~~~~~~~~~GsrIIiT  330 (1153)
T PLN03210        269 RAFLSEILDKKDI-------KIYHL-GAMEER------LKHRKVLIFIDDL----DDQDVLDALAGQTQWFGSGSRIIVI  330 (1153)
T ss_pred             HHHHHHHhCCCCc-------ccCCH-HHHHHH------HhCCeEEEEEeCC----CCHHHHHHHHhhCccCCCCcEEEEE
Confidence            1223333333332       12222 555555      3466778888984    433322222222222   4589999


Q ss_pred             ecCHHHHhhh-cCeEEEEe
Q 026376          201 SHDEHLISGS-VEELWVVS  218 (239)
Q Consensus       201 sHd~~~~~~~-~d~i~~l~  218 (239)
                      |||...+... +++++.+.
T Consensus       331 Trd~~vl~~~~~~~~~~v~  349 (1153)
T PLN03210        331 TKDKHFLRAHGIDHIYEVC  349 (1153)
T ss_pred             eCcHHHHHhcCCCeEEEec
Confidence            9999998754 67887764

syringae 6; Provisional

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.84  E-value=1.6e-09  Score=88.03  Aligned_cols=45  Identities=20%  Similarity=0.331  Sum_probs=39.6

Q ss_pred             eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEec
Q 026376           45 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS   89 (239)
Q Consensus        45 l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~   89 (239)
                      .+-+.+.+++|+.++|+||||||||||+++|+|+++|+.|.|.+.
T Consensus        15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ie   59 (186)
T cd01130          15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIE   59 (186)
T ss_pred             HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEC
Confidence            344667899999999999999999999999999999998887653

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=98.74  E-value=4.3e-08  Score=93.38  Aligned_cols=117  Identities=21%  Similarity=0.255  Sum_probs=70.8

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHH-HHHHhCCCCcHHHHHHHHH
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLL-YMMRCFPGVPEQKLRAHLG  132 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~  132 (239)
                      ..+.++|+||||+|||||+++|.+..++..|.-....   ..++..+.. .+........ .+...........+.+.++
T Consensus       174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~---~~fv~i~~~-~l~~d~~~i~~~llg~~~~~~~~~a~~~l~  249 (615)
T TIGR02903       174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAED---APFVEVDGT-TLRWDPREVTNPLLGSVHDPIYQGARRDLA  249 (615)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCC---CCeEEEech-hccCCHHHHhHHhcCCccHHHHHHHHHHHH
Confidence            3467999999999999999999999876655421100   112211110 0000000000 1111110111223455677


Q ss_pred             hcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 026376          133 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL  192 (239)
Q Consensus       133 ~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  192 (239)
                      .+|+.. .....+..+|||                +|+||| +..||+..+..+.+.+.+
T Consensus       250 ~~gl~~-~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~  291 (615)
T TIGR02903       250 ETGVPE-PKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED  291 (615)
T ss_pred             HcCCCc-hhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence            788864 345677899999                999999 899999999998888864

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=98.73  E-value=2.7e-08  Score=90.45  Aligned_cols=60  Identities=15%  Similarity=0.208  Sum_probs=53.4

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEe
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR   88 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~   88 (239)
                      .++.+.++..|..+..+++++ |.+.+|++++|+|+||+|||||+++|+|...++.|.+..
T Consensus       129 ~~~r~~v~~~l~tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~  188 (433)
T PRK07594        129 AMVRQPITQPLMTGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVL  188 (433)
T ss_pred             ceeccCHhheeCCCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEE
Confidence            577888888886567799999 999999999999999999999999999999999876643

>TIGR00767 rho transcription termination factor Rho

Probab=98.72  E-value=2.3e-08  Score=89.65  Aligned_cols=54  Identities=24%  Similarity=0.338  Sum_probs=49.3

Q ss_pred             eEEEEeeEEEcCCCCceee-----------eeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC
Q 026376           28 IISFSDASFGYPGGPILFK-----------NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP   81 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~-----------~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p   81 (239)
                      -+.++||++.|++.+.+|+           |+++.|.+|+.++|+||.|||||||++.|+..+..
T Consensus       130 ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~  194 (415)
T TIGR00767       130 RVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITR  194 (415)
T ss_pred             CeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence            5899999999987667887           99999999999999999999999999999987653

Members of this family differ in the specificity of RNA binding.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.72  E-value=1.9e-08  Score=66.84  Aligned_cols=39  Identities=33%  Similarity=0.486  Sum_probs=31.1

Q ss_pred             eeeeeEEEeC-CCEEEEECCCCCcHHHHHHHHhcCcCCCc
Q 026376           45 FKNLNFGIDL-DSRIAMVGPNGIGKSTILKLIAGELQPSS   83 (239)
Q Consensus        45 l~~isl~i~~-Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~   83 (239)
                      +++.++++.+ |+++.|.||||||||||+.+|.=++-+..
T Consensus        12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~   51 (62)
T PF13555_consen   12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT   51 (62)
T ss_pred             cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence            4456677775 56999999999999999999977665543

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=98.71  E-value=7.9e-08  Score=85.51  Aligned_cols=113  Identities=22%  Similarity=0.299  Sum_probs=68.9

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhcCcC-CCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHH
Q 026376           52 IDLDSRIAMVGPNGIGKSTILKLIAGELQ-PSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH  130 (239)
Q Consensus        52 i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (239)
                      ..++..+.|.||+||||||+++++.+.+. +..+.|..-         .++..          ..   .+.. ...+.  
T Consensus       119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti---------Edp~E----------~~---~~~~-~~~i~--  173 (343)
T TIGR01420       119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI---------EDPIE----------YV---HRNK-RSLIN--  173 (343)
T ss_pred             hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE---------cCChh----------hh---ccCc-cceEE--
Confidence            35688999999999999999999998765 345555321         11110          00   0000 00000  


Q ss_pred             HHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHH
Q 026376          131 LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHL  206 (239)
Q Consensus       131 l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~  206 (239)
                      -...+.         ...+    -.-+++++|-.+|+++++||+.   |.++....++.. ..|..|+.+.|-.+.
T Consensus       174 q~evg~---------~~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~aa-~tGh~v~~T~Ha~~~  232 (343)
T TIGR01420       174 QREVGL---------DTLS----FANALRAALREDPDVILIGEMR---DLETVELALTAA-ETGHLVFGTLHTNSA  232 (343)
T ss_pred             ccccCC---------CCcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHHH-HcCCcEEEEEcCCCH
Confidence            000111         0111    1235788999999999999997   888877666643 447789999997443

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PF00488 MutS_V: MutS domain V C-terminus

Probab=98.71  E-value=7.8e-07  Score=75.05  Aligned_cols=46  Identities=15%  Similarity=0.182  Sum_probs=33.1

Q ss_pred             ccCCCEEEEeCCCCCCCHHHHH----HHHHHHhh-cCCEEEEEecCHHHHh
Q 026376          163 FKKPHIILLDEPSNHLDLDAVE----ALIQGLVL-FQGGILMVSHDEHLIS  208 (239)
Q Consensus       163 ~~~p~llllDEPt~~LD~~~~~----~l~~~l~~-~~~tii~vsHd~~~~~  208 (239)
                      +.+..++|+||+..|=++....    .+++.|.+ .+..+|++||+.+...
T Consensus       120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~  170 (235)
T PF00488_consen  120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAE  170 (235)
T ss_dssp             --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGG
T ss_pred             cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHH
Confidence            3467899999999999987544    45667766 4667999999998754

; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....

>PRK13891 conjugal transfer protein TrbE; Provisional

Probab=98.70  E-value=2.8e-07  Score=90.94  Aligned_cols=52  Identities=17%  Similarity=0.104  Sum_probs=42.9

Q ss_pred             HHHHhccCCCEEEEeCCCCCC-CHHHHHHHHHHH---hhcCCEEEEEecCHHHHhh
Q 026376          158 FAKITFKKPHIILLDEPSNHL-DLDAVEALIQGL---VLFQGGILMVSHDEHLISG  209 (239)
Q Consensus       158 laral~~~p~llllDEPt~~L-D~~~~~~l~~~l---~~~~~tii~vsHd~~~~~~  209 (239)
                      |++++..+|+++++|||+.+| |+.....+.+.+   ++.+.+++++||+++.+..
T Consensus       680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~  735 (852)
T PRK13891        680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN  735 (852)
T ss_pred             HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence            577888999999999999999 677766665554   4557799999999998875

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.69  E-value=1e-07  Score=74.36  Aligned_cols=130  Identities=15%  Similarity=0.139  Sum_probs=72.2

Q ss_pred             EEEECCCCCcHHHHHHHHh--cCcCCCceeEEecCceEE-----EEEeeccCCCCCCCC------cHHHH----HHHh--
Q 026376           58 IAMVGPNGIGKSTILKLIA--GELQPSSGTVFRSAKVRI-----AVFSQHHVDGLDLSS------NPLLY----MMRC--  118 (239)
Q Consensus        58 ~~iiG~NGsGKSTLl~~l~--Gl~~p~~G~i~~~~~~~~-----~~~~q~~~~~~~~~~------~~~~~----~~~~--  118 (239)
                      ++|+|++|||||||++.|+  +..++.+|++........     .+..-+. .++....      .....    ....  
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDL-PGYGYAKVSKEVKEKWGKLIEEYLENRE   80 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecC-CCccccccCHHHHHHHHHHHHHHHHhCh
Confidence            6899999999999999999  777777776432111100     1111111 1111100      00000    0000  


Q ss_pred             ----------CC-C--CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHH-----hccCCCEEEEeCCCCCCCH
Q 026376          119 ----------FP-G--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI-----TFKKPHIILLDEPSNHLDL  180 (239)
Q Consensus       119 ----------~~-~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lara-----l~~~p~llllDEPt~~LD~  180 (239)
                                .. .  ....++.+++..++..-.....++..+|++++++......     ....++++    |+|++|.
T Consensus        81 ~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~  156 (170)
T cd01876          81 NLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKG  156 (170)
T ss_pred             hhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCC
Confidence                      00 0  1123345566666543222233467789998887765554     23456666    9999999


Q ss_pred             HHHHHHHHHHhh
Q 026376          181 DAVEALIQGLVL  192 (239)
Q Consensus       181 ~~~~~l~~~l~~  192 (239)
                      .+..++.+.+.+
T Consensus       157 ~~~~~l~~~l~~  168 (170)
T cd01876         157 QGIDELRALIEK  168 (170)
T ss_pred             CCHHHHHHHHHH
Confidence            999998888764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=98.66  E-value=5.2e-08  Score=85.68  Aligned_cols=54  Identities=22%  Similarity=0.342  Sum_probs=46.1

Q ss_pred             eeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEE
Q 026376           33 DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF   87 (239)
Q Consensus        33 ~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~   87 (239)
                      .++..|..+..+++++ |.+.+|++++|+|+||+|||||+++|+|...|+.|.+.
T Consensus        48 ~~~~~l~tGi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~  101 (326)
T cd01136          48 PIDEVLPTGVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIA  101 (326)
T ss_pred             cceeEcCCCcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEE
Confidence            3444554456789999 99999999999999999999999999999999877654

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=98.61  E-value=1.3e-08  Score=85.27  Aligned_cols=26  Identities=31%  Similarity=0.382  Sum_probs=23.2

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHh
Q 026376           51 GIDLDSRIAMVGPNGIGKSTILKLIA   76 (239)
Q Consensus        51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~   76 (239)
                      -+++|+.+.|.|++|||||||...++
T Consensus        16 Gi~~G~~~~i~G~~G~GKT~l~~~~~   41 (229)
T TIGR03881        16 GIPRGFFVAVTGEPGTGKTIFCLHFA   41 (229)
T ss_pred             CCcCCeEEEEECCCCCChHHHHHHHH
Confidence            47899999999999999999987654

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>TIGR00152 dephospho-CoA kinase

Probab=98.60  E-value=4.8e-08  Score=79.44  Aligned_cols=129  Identities=18%  Similarity=0.163  Sum_probs=88.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV  136 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  136 (239)
                      +++|+|.-||||||+.+.+.-..    |-..++                 . ......+..    ....-..++.+.||-
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~----~~~~i~-----------------~-D~~~~~~~~----~~~~~~~~i~~~fg~   54 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKY----HFPVID-----------------A-DKIAHQVVE----KGSPAYEKIVDHFGA   54 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhc----CCeEEe-----------------C-CHHHHHHHh----cCChHHHHHHHHHCH
Confidence            48999999999999999997542    111110                 0 011111111    112223455566663


Q ss_pred             CcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHH--Hhhhc
Q 026376          137 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHL--ISGSV  211 (239)
Q Consensus       137 ~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~--~~~~~  211 (239)
                      .  ..+.      -|+-+|..||.++..+|+.+..+|  +.+||.....+.+.+.+.   +.+||+.+|.+..  +...|
T Consensus        55 ~--i~~~------~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~  124 (188)
T TIGR00152        55 Q--ILNE------DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLC  124 (188)
T ss_pred             H--HhCC------CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhC
Confidence            1  2111      388999999999999999988887  889999988888777653   3489999998865  67789


Q ss_pred             CeEEEEeCCe
Q 026376          212 EELWVVSEGK  221 (239)
Q Consensus       212 d~i~~l~~G~  221 (239)
                      |.+++++.+.
T Consensus       125 D~vv~V~~~~  134 (188)
T TIGR00152       125 DRVIVVDVSP  134 (188)
T ss_pred             CEEEEEECCH
Confidence            9999987654

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A

Probab=98.60  E-value=6.6e-08  Score=69.43  Aligned_cols=51  Identities=31%  Similarity=0.404  Sum_probs=38.3

Q ss_pred             cCCCCCCChHHHHH-HHHHH--Hh----cc------CCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 026376          142 LQPMYTLSGGQKSR-VAFAK--IT----FK------KPHIILLDEPSNHLDLDAVEALIQGLVL  192 (239)
Q Consensus       142 ~~~~~~LSgGqkqr-v~lar--al----~~------~p~llllDEPt~~LD~~~~~~l~~~l~~  192 (239)
                      .++.+.+||||||. +++|.  |+    ..      .|.+++|||||++||.+.+..+++.+++
T Consensus        27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~   90 (90)
T PF13558_consen   27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ   90 (90)
T ss_dssp             EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred             eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence            35678999999954 33333  32    22      3799999999999999999999988753

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.60  E-value=4.4e-08  Score=89.04  Aligned_cols=43  Identities=26%  Similarity=0.402  Sum_probs=39.4

Q ss_pred             CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCce
Q 026376           41 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG   84 (239)
Q Consensus        41 ~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G   84 (239)
                      +..+++++ |++.+|++++|+|+||+|||||+++|+|+.+++.+
T Consensus       142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~  184 (434)
T PRK07196        142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVV  184 (434)
T ss_pred             ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeE
Confidence            34689999 99999999999999999999999999999988753

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.60  E-value=4.5e-08  Score=90.76  Aligned_cols=59  Identities=20%  Similarity=0.156  Sum_probs=52.6

Q ss_pred             EEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecC
Q 026376           31 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA   90 (239)
Q Consensus        31 ~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~   90 (239)
                      +.|++..|+ ...+++++++.+..|+.++|+||||||||||++.|.|+++|.+|++..+.
T Consensus       187 ~~d~~~v~G-q~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~  245 (506)
T PRK09862        187 QHDLSDVIG-QEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALES  245 (506)
T ss_pred             ccCeEEEEC-cHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEec
Confidence            458888884 45688999999999999999999999999999999999999999886554

>PRK13898 type IV secretion system ATPase VirB4; Provisional

Probab=98.58  E-value=1.9e-06  Score=84.74  Aligned_cols=42  Identities=21%  Similarity=0.450  Sum_probs=36.3

Q ss_pred             eeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEe
Q 026376           47 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR   88 (239)
Q Consensus        47 ~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~   88 (239)
                      .+||.+..+..++|+|++|||||||++.|++......+++.+
T Consensus       438 ~~n~~~~~~~~~~i~G~tGsGKS~l~~~l~~~~~~~~~~i~~  479 (800)
T PRK13898        438 YFNFHVRDVGHTLIIGPTGAGKTVLMNFLCAQAMKFSPRMFF  479 (800)
T ss_pred             EEEEEEcCCCEEEEECCCCCcHHHHHHHHHhhcccCCCeEEE
Confidence            357888888999999999999999999999988777777754

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=98.55  E-value=3.9e-07  Score=73.86  Aligned_cols=63  Identities=14%  Similarity=0.208  Sum_probs=43.4

Q ss_pred             HHHHHHHhcCCCcccccCCCCCCChHHHHHHH--HHHHhcc-CCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 026376          126 KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVA--FAKITFK-KPHIILLDEPSNHLDLDAVEALIQGLVL  192 (239)
Q Consensus       126 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~--laral~~-~p~llllDEPt~~LD~~~~~~l~~~l~~  192 (239)
                      ++.++++..++.-.....++..+|+|++|++.  +++.+-. .++++    |+|++|..+...+.+.+.+
T Consensus       126 ~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~  191 (196)
T PRK00454        126 QMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAK  191 (196)
T ss_pred             HHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHH
Confidence            34456666665423333466789999999977  6566544 34443    9999999999888887764

>PRK08149 ATP synthase SpaL; Validated

Probab=98.53  E-value=1.7e-07  Score=85.18  Aligned_cols=49  Identities=14%  Similarity=0.347  Sum_probs=42.7

Q ss_pred             CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCc---eeEEec
Q 026376           40 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS---GTVFRS   89 (239)
Q Consensus        40 ~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~---G~i~~~   89 (239)
                      .+..+++++ +++.+|++++|+|+||+|||||+++|++...++.   |.|...
T Consensus       137 tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~r  188 (428)
T PRK08149        137 TGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGER  188 (428)
T ss_pred             CCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeC
Confidence            345689999 9999999999999999999999999999998876   655443

>PRK06315 type III secretion system ATPase; Provisional

Probab=98.51  E-value=1.4e-07  Score=85.96  Aligned_cols=46  Identities=20%  Similarity=0.347  Sum_probs=39.1

Q ss_pred             CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-CceeEEe
Q 026376           42 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-SSGTVFR   88 (239)
Q Consensus        42 ~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-~~G~i~~   88 (239)
                      ..+++++ |.+.+|++++|+|+||+|||||+++|+|+.++ +.|.|..
T Consensus       152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~l  198 (442)
T PRK06315        152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIAL  198 (442)
T ss_pred             EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEE
Confidence            4578887 99999999999999999999999999998854 4455543

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=98.50  E-value=1.5e-07  Score=85.78  Aligned_cols=54  Identities=24%  Similarity=0.322  Sum_probs=46.0

Q ss_pred             eEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEe
Q 026376           34 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR   88 (239)
Q Consensus        34 l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~   88 (239)
                      ++..+..+..+++++ |.+.+|++++|+|+||+|||||+++|+|...|+.|.+..
T Consensus       125 i~~~l~tG~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~  178 (422)
T TIGR02546       125 IDQPLPTGVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIAL  178 (422)
T ss_pred             cccccCCCceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEE
Confidence            344444455689999 999999999999999999999999999999999887643

>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI

Probab=98.50  E-value=2.8e-07  Score=83.57  Aligned_cols=57  Identities=19%  Similarity=0.260  Sum_probs=47.7

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeE
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV   86 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i   86 (239)
                      ++-..++..|..+..+++.+ |.+.+|++++|+|+||+|||||+++|++...|+.+.+
T Consensus       112 ~~R~~~~~~~~tGi~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi  168 (411)
T TIGR03496       112 LKRAPIDEPLDVGVRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVV  168 (411)
T ss_pred             HhccCcceEeeeeEEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEE
Confidence            45556666665456688888 9999999999999999999999999999999986654

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=98.49  E-value=2e-07  Score=84.62  Aligned_cols=59  Identities=17%  Similarity=0.222  Sum_probs=47.8

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEe
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR   88 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~   88 (239)
                      ++-..++--+..+..+++ .+|.+.+|++++|+|+||+|||||+++|++..+|+.|.|..
T Consensus       115 ~~R~~i~~~l~tGi~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~  173 (418)
T TIGR03498       115 MSRARVGEPLDTGVRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIAL  173 (418)
T ss_pred             hhccCcccccCCccEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEE
Confidence            344445555544555665 69999999999999999999999999999999999887653

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK09099 type III secretion system ATPase; Provisional

Probab=98.48  E-value=2.2e-07  Score=84.72  Aligned_cols=49  Identities=22%  Similarity=0.384  Sum_probs=43.8

Q ss_pred             CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEec
Q 026376           40 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS   89 (239)
Q Consensus        40 ~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~   89 (239)
                      .+..+++++ |.+.+|++++|+|+||+|||||+++|++...++.|.|...
T Consensus       149 TGi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~i  197 (441)
T PRK09099        149 TGVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALI  197 (441)
T ss_pred             CCceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEE
Confidence            345689999 9999999999999999999999999999999998876543

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.47  E-value=1.8e-06  Score=65.55  Aligned_cols=106  Identities=22%  Similarity=0.327  Sum_probs=63.0

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHh
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGS  133 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  133 (239)
                      .+..+.|.||.|+|||||++.++.........+        .++.....     . .....             ......
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v--------~~~~~~~~-----~-~~~~~-------------~~~~~~   70 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPF--------LYLNASDL-----L-EGLVV-------------AELFGH   70 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCe--------EEEehhhh-----h-hhhHH-------------HHHhhh
Confidence            578899999999999999999998875322222        12111000     0 00000             000000


Q ss_pred             cCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--------CCEEEEEecCHH
Q 026376          134 FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--------QGGILMVSHDEH  205 (239)
Q Consensus       134 ~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--------~~tii~vsHd~~  205 (239)
                      .                  .+......+...++.++++||.-.. +......+.+.+...        +..+|+++++..
T Consensus        71 ~------------------~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~  131 (151)
T cd00009          71 F------------------LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL  131 (151)
T ss_pred             h------------------hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence            0                  5556667777889999999997765 444445555544432        347888888654

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.47  E-value=1.6e-06  Score=77.72  Aligned_cols=38  Identities=21%  Similarity=0.365  Sum_probs=33.5

Q ss_pred             ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376           43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      .++++.++.+.+|++++++||||+||||++..|++...
T Consensus       125 ~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~  162 (374)
T PRK14722        125 PVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCV  162 (374)
T ss_pred             hhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35677888999999999999999999999999998653

>TIGR01070 mutS1 DNA mismatch repair protein MutS

Probab=98.46  E-value=8.5e-07  Score=87.19  Aligned_cols=46  Identities=22%  Similarity=0.191  Sum_probs=35.0

Q ss_pred             ccCCCEEEEeCC---CCCCCHHH-HHHHHHHHhh-cCCEEEEEecCHHHHh
Q 026376          163 FKKPHIILLDEP---SNHLDLDA-VEALIQGLVL-FQGGILMVSHDEHLIS  208 (239)
Q Consensus       163 ~~~p~llllDEP---t~~LD~~~-~~~l~~~l~~-~~~tii~vsHd~~~~~  208 (239)
                      +.++.++|+||+   |+.+|-.+ ...+++.+.+ .+..++++||..+...
T Consensus       669 at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~~  719 (840)
T TIGR01070       669 ATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELTA  719 (840)
T ss_pred             CCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHHH
Confidence            568899999999   66666555 3457787777 5668999999987654

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.44  E-value=1.5e-07  Score=77.23  Aligned_cols=28  Identities=32%  Similarity=0.456  Sum_probs=26.3

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      ++|++++|+||+|||||||+++|++.++
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            5899999999999999999999999875

>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI

Probab=98.44  E-value=3e-07  Score=83.43  Aligned_cols=53  Identities=23%  Similarity=0.324  Sum_probs=45.4

Q ss_pred             eEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEE
Q 026376           34 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF   87 (239)
Q Consensus        34 l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~   87 (239)
                      ++..|..+..+++++ |.+.+|++++|+|+||+|||||+++|++..+++.|.|.
T Consensus       117 ~~~~~~tGi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~  169 (413)
T TIGR03497       117 IRDPLETGIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIA  169 (413)
T ss_pred             hhhhccccceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEE
Confidence            344454455689999 99999999999999999999999999999999888664

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.44  E-value=1.6e-07  Score=75.85  Aligned_cols=28  Identities=29%  Similarity=0.325  Sum_probs=26.7

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcCC
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGELQP   81 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p   81 (239)
                      +|++++|+|+||||||||+++|+|++.+
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~   29 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFSA   29 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            6999999999999999999999999877

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.43  E-value=1.8e-07  Score=75.92  Aligned_cols=27  Identities=30%  Similarity=0.511  Sum_probs=25.5

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhcCcCC
Q 026376           55 DSRIAMVGPNGIGKSTILKLIAGELQP   81 (239)
Q Consensus        55 Ge~~~iiG~NGsGKSTLl~~l~Gl~~p   81 (239)
                      |++++|+||||||||||+++|++...+
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~   28 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQT   28 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCC
Confidence            789999999999999999999998765

>PRK05922 type III secretion system ATPase; Validated

Probab=98.43  E-value=6e-07  Score=81.65  Aligned_cols=53  Identities=21%  Similarity=0.300  Sum_probs=44.0

Q ss_pred             eEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEE
Q 026376           34 ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF   87 (239)
Q Consensus        34 l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~   87 (239)
                      ++.-+..+..+++.+ +.+.+|++++|+|+||+|||||+++|+|..+++.|.+.
T Consensus       137 i~e~l~TGIr~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~  189 (434)
T PRK05922        137 IQEIFPTGIKAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIA  189 (434)
T ss_pred             cceecCCCceeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEEE
Confidence            333343344577776 99999999999999999999999999999999988774

>TIGR00235 udk uridine kinase

Probab=98.40  E-value=1.8e-07  Score=77.20  Aligned_cols=29  Identities=28%  Similarity=0.334  Sum_probs=27.0

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcCcCC
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGELQP   81 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p   81 (239)
                      ++|++++|+||||||||||++.|++++++
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~   32 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK   32 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            57899999999999999999999999875

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	239
2iwh_A	986	Structure Of Yeast Elongation Factor 3 In Complex W		5e-17
2iwh_A	986	Structure Of Yeast Elongation Factor 3 In Complex W		7e-16
2bbs_A	290	Human Deltaf508 Nbd1 With Three Solubilizing Mutati		9e-17
1xmi_A	291	Crystal Structure Of Human F508a Nbd1 Domain With A		1e-16
2iw3_A	986	Elongation Factor 3 In Complex With Adp Length = 98		2e-16
2ix8_A	976	Model For Eef3 Bound To An 80s Ribosome Length = 97		2e-16
2bbt_A	290	Human Deltaf508 Nbd1 With Two Solublizing Mutations		3e-16
2pzf_A	228	Minimal Human Cftr First Nucleotide Binding Domain		4e-16
2pze_A	229	Minimal Human Cftr First Nucleotide Binding Domain		6e-16
2pzg_A	241	Minimal Human Cftr First Nucleotide Binding Domain		7e-16
1xf9_A	283	Structure Of Nbd1 From Murine Cftr- F508s Mutant Le		3e-14
1xmj_A	290	Crystal Structure Of Human Deltaf508 Human Nbd1 Dom		3e-14
1xfa_A	283	Structure Of Nbd1 From Murine Cftr- F508r Mutant Le		4e-14
3si7_A	285	The Crystal Structure Of The Nbd1 Domain Of The Mou		4e-14
1r0z_A	286	Phosphorylated Cystic Fibrosis Transmembrane Conduc		6e-14
1q3h_A	286	Mouse Cftr Nbd1 With Amp.Pnp Length = 286		6e-14
3gfo_A	275	Structure Of Cbio1 From Clostridium Perfringens: Pa		7e-14
2bbo_A	291	Human Nbd1 With Phe508 Length = 291		8e-14
1z47_A	355	Structure Of The Atpase Subunit Cysa Of The Putativ		8e-13
2it1_A	362	Structure Of Ph0203 Protein From Pyrococcus Horikos		2e-11
1oxs_C	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		1e-10
3g60_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		1e-10
3g5u_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		2e-10
1jj7_A	260	Crystal Structure Of The C-Terminal Atpase Domain O		2e-10
1oxx_K	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		4e-10
4ayt_A	595	Structure Of The Human Mitochondrial Abc Transporte		4e-10
4ayw_A	619	Structure Of The Human Mitochondrial Abc Transporte		5e-10
2ixf_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		8e-10
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		1e-09
1g29_1	372	Malk Length = 372		1e-09
3nh6_A	306	Nucleotide Binding Domain Of Human Abcb6 (Apo Struc		1e-09
2ixe_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		1e-09
3bk7_A	607	Structure Of The Complete Abce1RNAASE-L Inhibitor P		2e-09
3j15_B	593	Model Of Ribosome-Bound Archaeal Pelota And Abce1 L		2e-09
2yyz_A	359	Crystal Structure Of Sugar Abc Transporter, Atp-Bin		2e-09
1l2t_A	235	Dimeric Structure Of Mj0796, A Bacterial Abc Transp		2e-09
1f3o_A	235	Crystal Structure Of Mj0796 Atp-Binding Cassette Le		2e-09
4hlu_D	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		5e-09
3tif_A	235	Dimeric Structure Of A Post-Hydrolysis State Of The		6e-09
2yz2_A	266	Crystal Structure Of The Abc Transporter In The Cob		6e-09
4hlu_A	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		6e-09
4g1u_C	266	X-Ray Structure Of The Bacterial Heme Transporter H		1e-08
2d62_A	375	Crystal Structure Of Multiple Sugar Binding Transpo		1e-08
2pmk_A	243	Crystal Structures Of An Isolated Abc-Atpase In Com		1e-08
1mt0_A	241	Atp-Binding Domain Of Haemolysin B From Escherichia		2e-08
2ff7_A	247	The Abc-Atpase Of The Abc-Transporter Hlyb In The A		2e-08
3b5j_A	243	Crystal Structures Of The S504a Mutant Of An Isolat		2e-08
3b5w_A	582	Crystal Structure Of Eschericia Coli Msba Length =		3e-08
2ixg_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		3e-08
1mv5_A	243	Crystal Structure Of Lmra Atp-Binding Domain Length		3e-08
2nq2_C	253	An Inward-Facing Conformation Of A Putative Metal-C		3e-08
1yqt_A	538	Rnase-L Inhibitor Length = 538		4e-08
1xef_A	241	Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI		4e-08
2ffa_A	247	Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr		4e-08
2ffb_A	247	The Crystal Structure Of The Hlyb-Nbd E631q Mutant		4e-08
2ghi_A	260	Crystal Structure Of Plasmodium Yoelii Multidrug Re		5e-08
3d31_A	348	Modbc From Methanosarcina Acetivorans Length = 348		6e-08
2pcj_A	224	Crystal Structure Of Abc Transporter (Aq_297) From		6e-08
3b5y_A	582	Crystal Structure Of Msba From Salmonella Typhimuri		8e-08
1q1b_A	381	Crystal Structure Of E. Coli Malk In The Nucleotide		2e-07
1q12_A	381	Crystal Structure Of The Atp-bound E. Coli Malk Len		3e-07
2pjz_A	263	The Crystal Structure Of Putative Cobalt Transport		3e-07
1v43_A	372	Crystal Structure Of Atpase Subunit Of Abc Sugar Tr		3e-07
1vci_A	373	Crystal Structure Of The Atp-binding Cassette Of Mu		4e-07
2onk_A	240	Abc Transporter Modbc In Complex With Its Binding P		4e-07
3b5x_A	582	Crystal Structure Of Msba From Vibrio Cholerae Leng		6e-07
2r6g_A	381	The Crystal Structure Of The E. Coli Maltose Transp		6e-07
1sgw_A	214	Putative Abc Transporter (Atp-Binding Protein) From		4e-06
3fvq_A	359	Crystal Structure Of The Nucleotide Binding Domain		9e-06
3qf4_A	587	Crystal Structure Of A Heterodimeric Abc Transporte		2e-05
4fwi_B	334	Crystal Structure Of The Nucleotide-binding Domain		2e-05
2hyd_A	578	Multidrug Abc Transporter Sav1866 Length = 578		2e-05
3j16_B	608	Models Of Ribosome-Bound Dom34p And Rli1p And Their		2e-05
3ozx_A	538	Crystal Structure Of Abce1 Of Sulfolubus Solfataric		4e-05
3dhw_C	343	Crystal Structure Of Methionine Importer Metni Leng		5e-05
1l7v_C	249	Bacterial Abc Transporter Involved In B12 Uptake Le		5e-05
2cbz_A	237	Structure Of The Human Multidrug Resistance Protein		6e-05
2qi9_C	249	Abc-Transporter Btucd In Complex With Its Periplasm		7e-05
4dbl_C	249	Crystal Structure Of E159q Mutant Of Btucdf Length		9e-05
3tuj_C	366	Inward Facing Conformations Of The Metni Methionine		9e-05
3tui_C	366	Inward Facing Conformations Of The Metni Methionine		9e-05
3gd7_A	390	Crystal Structure Of Human Nbd2 Complexed With N6-		1e-04
2ihy_A	279	Structure Of The Staphylococcus Aureus Putative Atp		1e-04
1vpl_A	256	Crystal Structure Of Abc Transporter Atp-binding Pr		5e-04
2d2e_A	250	Crystal Structure Of Atypical Cytoplasmic Abc-Atpas		5e-04
2olj_A	263	Abc Protein Artp In Complex With AdpMG2+ Length = 2		7e-04
3c41_J	242	Abc Protein Artp In Complex With Amp-PnpMG2+ Length		7e-04
4fi3_C	249	Structure Of Vitamin B12 Transporter Btucd-F In A N		8e-04

>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 92/202 (45%), Gaps = 10/202 (4%)
Query: 35  SFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV--FRSAKV 92
           S  Y G  IL       +    R  + GPNG GKST+++ IA      +G V  F + + 
Sbjct: 442 SLAY-GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIA------NGQVDGFPTQEE 494
Query: 93  RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQ 152
              V+ +H +DG    ++ L ++     G  E  ++  L  FG T  +   P+  LSGG 
Sbjct: 495 CRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEA-IKDKLIEFGFTDEMIAMPISALSGGW 553
Query: 153 KSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVE 212
           K ++A A+   +   I+LLDEP+NHLD   V  L+  L       + +SHD   +    E
Sbjct: 554 KMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCE 613
Query: 213 ELWVVSEGKATPFHGTFHDYKK 234
            +      K   + G F ++ K
Sbjct: 614 YIINYEGLKLRKYKGNFTEFVK 635

>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986

Iteration: 1
 Score = 80.5 bits (197), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 54/77 (70%)
Query: 148 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLI 207
           LSGGQK ++  A  T+++PH+I+LDEP+N+LD D++ AL + L  F+GG+++++H     
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFT 961
Query: 208 SGSVEELWVVSEGKATP 224
               EE+W V +G+ TP
Sbjct: 962 KNLTEEVWAVKDGRMTP 978

>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290

Iteration: 1
 Score = 83.6 bits (205), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 116/226 (51%), Gaps = 29/226 (12%)
Query: 25  GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 84
           G   +SFS+  F   G P+L K++NF I+    +A+ G  G GK+++L +I GEL+PS G
Sbjct: 37  GDDSLSFSN--FSLLGTPVL-KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 93
Query: 85  TVFRSAKVRIAVFSQH----------HVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF 134
            +  S   RI+  SQ+          ++ G+        Y  R    +   +L   +  F
Sbjct: 94  KIKHSG--RISFCSQNSWIMPGTIKENIIGVSYDE----YRYRSV--IKACQLEEDISKF 145
Query: 135 GVTGNLAL-QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQG 189
               N+ L +   TLSGGQ++R++ A+  +K   + LLD P  +LD+    +  E+ +  
Sbjct: 146 AEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 205
Query: 190 LVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 235
           L+  +  IL+ S  EHL     +++ ++ EG ++ F+GTF + + +
Sbjct: 206 LMANKTRILVTSKMEHL--KKADKILILHEG-SSYFYGTFSELQNL 248

>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 113/225 (50%), Gaps = 26/225 (11%)
Query: 25  GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 84
           G   +SFS+  F   G P+L K++NF I+    +A+ G  G GK+++L +I GEL+PS G
Sbjct: 37  GDDSLSFSN--FSLLGTPVL-KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 93
Query: 85  TVFRSAKVRIA---------VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFG 135
            +  S ++               ++ + G+        Y  R    +   +L   +  F 
Sbjct: 94  KIKHSGRISFCSQFSWIMPGTIKENIIAGVSYDE----YRYRSV--IKACQLEEDISKFA 147
Query: 136 VTGNLAL-QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGL 190
              N+ L +   TLSGGQ++R++ A+  +K   + LLD P  +LD+    +  E+ +  L
Sbjct: 148 EKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL 207
Query: 191 VLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 235
           +  +  IL+ S  EHL     +++ ++ EG ++ F+GTF + + +
Sbjct: 208 MANKTRILVTSKMEHL--KKADKILILHEG-SSYFYGTFSELQNL 249

>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986

Iteration: 1
 Score = 78.2 bits (191), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 59/202 (29%), Positives = 90/202 (44%), Gaps = 10/202 (4%)
Query: 35  SFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV--FRSAKV 92
           S  Y G  IL       +    R  + GPNG GKST+ + IA      +G V  F + + 
Sbjct: 442 SLAY-GAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIA------NGQVDGFPTQEE 494
Query: 93  RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQ 152
              V+ +H +DG    ++ L ++     G  E  ++  L  FG T      P+  LSGG 
Sbjct: 495 CRTVYVEHDIDGTHSDTSVLDFVFESGVGTKE-AIKDKLIEFGFTDEXIAXPISALSGGW 553
Query: 153 KSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVE 212
           K ++A A+   +   I+LLDEP+NHLD   V  L+  L       + +SHD   +    E
Sbjct: 554 KXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCE 613
Query: 213 ELWVVSEGKATPFHGTFHDYKK 234
            +      K   + G F ++ K
Sbjct: 614 YIINYEGLKLRKYKGNFTEFVK 635

>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976

Iteration: 1
 Score = 78.2 bits (191), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 59/202 (29%), Positives = 90/202 (44%), Gaps = 10/202 (4%)
Query: 35  SFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV--FRSAKV 92
           S  Y G  IL       +    R  + GPNG GKST+ + IA      +G V  F + + 
Sbjct: 436 SLAY-GAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIA------NGQVDGFPTQEE 488
Query: 93  RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQ 152
              V+ +H +DG    ++ L ++     G  E  ++  L  FG T      P+  LSGG 
Sbjct: 489 CRTVYVEHDIDGTHSDTSVLDFVFESGVGTKE-AIKDKLIEFGFTDEXIAXPISALSGGW 547
Query: 153 KSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVE 212
           K ++A A+   +   I+LLDEP+NHLD   V  L+  L       + +SHD   +    E
Sbjct: 548 KXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCE 607
Query: 213 ELWVVSEGKATPFHGTFHDYKK 234
            +      K   + G F ++ K
Sbjct: 608 YIINYEGLKLRKYKGNFTEFVK 629

>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 112/217 (51%), Gaps = 27/217 (12%)
Query: 34  ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 93
           ++F   G P+L K++NF I+    +A+ G  G GK+++L +I GEL+PS G +  S   R
Sbjct: 44  SNFSLLGTPVL-KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--R 100
Query: 94  IAVFSQH----------HVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL- 142
           I+  SQ+          ++ G+        Y  R    +   +L   +  F    N+ L 
Sbjct: 101 ISFCSQNSWIMPGTIKENIIGVSYDE----YRYRSV--IKACQLEEDISKFAEKDNIVLG 154
Query: 143 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGLVLFQGGIL 198
           +   TLSGGQ++R++ A+  +K   + LLD P  +LD+    +  E+ +  L+  +  IL
Sbjct: 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 214
Query: 199 MVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 235
           + S  EHL     +++ ++ EG ++ F+GTF + + +
Sbjct: 215 VTSKMEHL--KKADKILILHEG-SSYFYGTFSELQNL 248

>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228

Iteration: 1
 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 109/217 (50%), Gaps = 26/217 (11%)
Query: 34  ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 93
            +F   GG  + K++NF I+    +A+ G  G GK+++L +I GEL+PS G +  S   R
Sbjct: 13  TAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--R 70
Query: 94  IAVFSQ----------HHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL- 142
           I+  SQ           ++ G+        Y  R    +   +L   +  F    N+ L 
Sbjct: 71  ISFCSQFSWIMPGTIKENIIGVSYDE----YRYRSV--IKACQLEEDISKFAEKDNIVLG 124
Query: 143 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGLVLFQGGIL 198
           +   TLSGGQ++R++ A+  +K   + LLD P  +LD+    +  E+ +  L+  +  IL
Sbjct: 125 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 184
Query: 199 MVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 235
           + S  EHL     +++ ++ EG ++ F+GTF + + +
Sbjct: 185 VTSKMEHL--KKADKILILHEG-SSYFYGTFSELQNL 218

>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229

Iteration: 1
 Score = 80.9 bits (198), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 109/214 (50%), Gaps = 19/214 (8%)
Query: 34  ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 93
            +F   GG  + K++NF I+    +A+ G  G GK+++L +I GEL+PS G +  S   R
Sbjct: 13  TAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--R 70
Query: 94  IAVFSQ-HHVDGLDLSSNPLL------YMMRCFPGVPEQKLRAHLGSFGVTGNLAL-QPM 145
           I+  SQ   +    +  N +       Y  R    +   +L   +  F    N+ L +  
Sbjct: 71  ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSV--IKACQLEEDISKFAEKDNIVLGEGG 128
Query: 146 YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGLVLFQGGILMVS 201
            TLSGGQ++R++ A+  +K   + LLD P  +LD+    +  E+ +  L+  +  IL+ S
Sbjct: 129 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 188
Query: 202 HDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 235
             EHL     +++ ++ EG ++ F+GTF + + +
Sbjct: 189 KMEHL--KKADKILILHEG-SSYFYGTFSELQNL 219

>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241

Iteration: 1
 Score = 80.5 bits (197), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 109/214 (50%), Gaps = 19/214 (8%)
Query: 34  ASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR 93
            +F   GG  + K++NF I+    +A+ G  G GK+++L +I GEL+PS G +  S   R
Sbjct: 25  TAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--R 82
Query: 94  IAVFSQ-HHVDGLDLSSNPLL------YMMRCFPGVPEQKLRAHLGSFGVTGNLAL-QPM 145
           I+  SQ   +    +  N +       Y  R    +   +L   +  F    N+ L +  
Sbjct: 83  ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSV--IKACQLEEDISKFAEKDNIVLGEGG 140
Query: 146 YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGLVLFQGGILMVS 201
            TLSGGQ++R++ A+  +K   + LLD P  +LD+    +  E+ +  L+  +  IL+ S
Sbjct: 141 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 200
Query: 202 HDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 235
             EHL     +++ ++ EG ++ F+GTF + + +
Sbjct: 201 KMEHL--KKADKILILHEG-SSYFYGTFSELQNL 231

>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 24/210 (11%)
Query: 40  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIA---- 95
           G P+L KN+N  I+    +A+ G  G GK+++L LI GEL+ S G +  S +V       
Sbjct: 50  GNPVL-KNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFS 108
Query: 96  -----VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-QPMYTLS 149
                   ++ + G+           R    V   +L+  +  F    N  L +   TLS
Sbjct: 109 WIMPGTIKENIISGVSYDE------YRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLS 162
Query: 150 GGQKSRVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGLVLFQGGILMVSHDEH 205
           GGQ++R++ A+  +K   + LLD P  +LD+       E+ +  L+  +  IL+ S  EH
Sbjct: 163 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEH 222
Query: 206 LISGSVEELWVVSEGKATPFHGTFHDYKKM 235
           L     +++ ++ +G ++ F+GTF + + +
Sbjct: 223 L--RKADKILILHQG-SSYFYGTFSELQSL 249

>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 107/211 (50%), Gaps = 27/211 (12%)
Query: 40  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQ 99
           G P+L K++NF I+    +A+ G  G GK+++L +I GEL+PS G +  S   RI+  SQ
Sbjct: 50  GTPVL-KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQ 106
Query: 100 ----------HHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-QPMYTL 148
                      ++ G+        Y  R    +   +L   +  F    N+ L +   TL
Sbjct: 107 FSWIMPGTIKENIIGVSYDE----YRYRSV--IKACQLEEDISKFAEKDNIVLGEGGITL 160
Query: 149 SGGQKSRVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGLVLFQGGILMVSHDE 204
           S GQ+++++ A+  +K   + LLD P  +LD+    +  E+ +  L+  +  IL+ S  E
Sbjct: 161 SEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKME 220
Query: 205 HLISGSVEELWVVSEGKATPFHGTFHDYKKM 235
           HL     +++ ++ EG ++ F+GTF + + +
Sbjct: 221 HL--KKADKILILHEG-SSYFYGTFSELQNL 248

>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 24/210 (11%)
Query: 40  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIA---- 95
           G P+L KN+N  I+    +A+ G  G GK+++L LI GEL+ S G +  S +V       
Sbjct: 50  GNPVL-KNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFS 108
Query: 96  -----VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-QPMYTLS 149
                   ++ + G+           R    V   +L+  +  F    N  L +   TLS
Sbjct: 109 WIMPGTIKENIIRGVSYDE------YRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLS 162
Query: 150 GGQKSRVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGLVLFQGGILMVSHDEH 205
           GGQ++R++ A+  +K   + LLD P  +LD+       E+ +  L+  +  IL+ S  EH
Sbjct: 163 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEH 222
Query: 206 LISGSVEELWVVSEGKATPFHGTFHDYKKM 235
           L     +++ ++ +G ++ F+GTF + + +
Sbjct: 223 L--RKADKILILHQG-SSYFYGTFSELQSL 249

>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 105/209 (50%), Gaps = 23/209 (11%)
Query: 40  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR-IAVFS 98
           G P+L KN+N  I+    +A+ G  G GK+++L LI GEL+ S G +  S +V   + FS
Sbjct: 50  GNPVL-KNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFS 108
Query: 99  -------QHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-QPMYTLSG 150
                  + ++ G+           R    V   +L+  +  F    N  L +   TLSG
Sbjct: 109 WIMPGTIKENIIGVSYDE------YRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSG 162
Query: 151 GQKSRVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGLVLFQGGILMVSHDEHL 206
           GQ++R++ A+  +K   + LLD P  +LD+       E+ +  L+  +  IL+ S  EHL
Sbjct: 163 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHL 222
Query: 207 ISGSVEELWVVSEGKATPFHGTFHDYKKM 235
                +++ ++ +G ++ F+GTF + + +
Sbjct: 223 --RKADKILILHQG-SSYFYGTFSELQSL 248

>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286

Iteration: 1
 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 103/205 (50%), Gaps = 14/205 (6%)
Query: 40  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQ 99
           G P+L KN+N  I+    +A+ G  G GK+++L LI GEL+ S G +  S +V       
Sbjct: 50  GNPVL-KNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFS 108
Query: 100 HHVDGLDLSSNPLLYM----MRCFPGVPEQKLRAHLGSFGVTGNLAL-QPMYTLSGGQKS 154
             + G  +  N +  +     R    V   +L+  +  F    N  L +   TLSGGQ++
Sbjct: 109 WIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRA 167
Query: 155 RVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGLVLFQGGILMVSHDEHLISGS 210
           R++ A+  +K   + LLD P  +LD+       E+ +  L+  +  IL+ S  EHL    
Sbjct: 168 RISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHL--RK 225
Query: 211 VEELWVVSEGKATPFHGTFHDYKKM 235
            +++ ++ +G ++ F+GTF + + +
Sbjct: 226 ADKILILHQG-SSYFYGTFSELQSL 249

>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 103/205 (50%), Gaps = 14/205 (6%)
Query: 40  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQ 99
           G P+L KN+N  I+    +A+ G  G GK+++L LI GEL+ S G +  S +V       
Sbjct: 50  GNPVL-KNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFS 108
Query: 100 HHVDGLDLSSNPLLYM----MRCFPGVPEQKLRAHLGSFGVTGNLAL-QPMYTLSGGQKS 154
             + G  +  N +  +     R    V   +L+  +  F    N  L +   TLSGGQ++
Sbjct: 109 WIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRA 167
Query: 155 RVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGLVLFQGGILMVSHDEHLISGS 210
           R++ A+  +K   + LLD P  +LD+       E+ +  L+  +  IL+ S  EHL    
Sbjct: 168 RISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHL--RK 225
Query: 211 VEELWVVSEGKATPFHGTFHDYKKM 235
            +++ ++ +G ++ F+GTF + + +
Sbjct: 226 ADKILILHQG-SSYFYGTFSELQSL 249

>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275

Iteration: 1
 Score = 73.9 bits (180), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 102/216 (47%), Gaps = 21/216 (9%)
Query: 28  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           I+   + ++ Y  G    K +N  I      A++G NG+GKST+ +   G L+PSSG + 
Sbjct: 7   ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66
Query: 88  RSAK----VRIAVFSQHHVDGLDLSS--NPL----LYMMRCFPGV----PEQKLRAHL-G 132
              K     R  +       G+      N L    +Y    F  V    PE ++R  +  
Sbjct: 67  FDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDN 126
Query: 133 SFGVTG--NLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL 190
           +   TG  +L  +P + LS GQK RVA A +   +P +++LDEP+  LD   V  +++ L
Sbjct: 127 ALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLL 186
Query: 191 VLFQG----GILMVSHDEHLISGSVEELWVVSEGKA 222
           V  Q      I++ +HD  ++    + ++V+ EG+ 
Sbjct: 187 VEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRV 222

>pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291

Iteration: 1
 Score = 73.9 bits (180), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 106/208 (50%), Gaps = 20/208 (9%)
Query: 40  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQ 99
           G P+L K++NF I+    +A+ G  G GK+++L +I GEL+PS G +  S   RI+  SQ
Sbjct: 50  GTPVL-KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQ 106
Query: 100 HHV-------DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-QPMYTLSGG 151
                     + +    +   Y  R    +   +L   +  F    N+ L +   TLS G
Sbjct: 107 FSWIMPGTIKENIIFGVSYDEYRYRSV--IKACQLEEDISKFAEKDNIVLGEGGITLSEG 164
Query: 152 QKSRVAFAKITFKKPHIILLDEPSNHLDL----DAVEALIQGLVLFQGGILMVSHDEHLI 207
           Q+++++ A+  +K   + LLD P  +LD+    +  E+ +  L+  +  IL+ S  EHL 
Sbjct: 165 QQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHL- 223
Query: 208 SGSVEELWVVSEGKATPFHGTFHDYKKM 235
               +++ ++ EG ++ F+GTF + + +
Sbjct: 224 -KKADKILILHEG-SSYFYGTFSELQNL 249

>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355

Iteration: 1
 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 100/226 (44%), Gaps = 16/226 (7%)
Query: 25  GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 84
           G   I F      YPGG    + ++F I     + ++GP+G GK+TIL+LIAG  +P+ G
Sbjct: 11  GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKG 70
Query: 85  TVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPG---------VPEQKLRAH---LG 132
            V+   K    +  Q    GL   +  L   M  +           VP+ ++ A    L 
Sbjct: 71  DVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130
Query: 133 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL-- 190
            F    + A +  + LSGGQ+ RVA A+    +P ++L DEP   +D      L   +  
Sbjct: 131 RFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQ 190
Query: 191 VLFQGGI--LMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK 234
           V  + G+  + V+HD+       + + V+ EG    F      Y+K
Sbjct: 191 VHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK 236

>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 91/192 (47%), Gaps = 18/192 (9%)
Query: 47  NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 106
           N+N  I     +A++GP+G GKST+L  IAG  +P+SG ++   K    +  +    GL 
Sbjct: 21  NINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLV 80
Query: 107 LSSNPLLYMMRCFPGVP-------------EQKLRAHLGSFGVTGNLALQPMYTLSGGQK 153
             +  L   M  +  +              ++K+R       +   L   P + LSGGQ+
Sbjct: 81  FQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP-WQLSGGQQ 139
Query: 154 SRVAFAKITFKKPHIILLDEPSNHLDL---DAVEALIQGLVLFQG-GILMVSHDEHLISG 209
            RVA A+   K+P ++LLDEP ++LD      V A ++ L    G   + V+HD+     
Sbjct: 140 QRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALA 199
Query: 210 SVEELWVVSEGK 221
             + + V+ EG+
Sbjct: 200 MADRIAVIREGE 211

>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 100/205 (48%), Gaps = 25/205 (12%)
Query: 40  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----RI 94
           G  +   N+N  I+   R  ++GP+G GK+T +++IAG   PS+G ++   ++     ++
Sbjct: 16  GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKL 75
Query: 95  AVFSQHHVDGLDLSSNPLLYMMRCFPGVP---------EQKLRAHLGSFGVTGNLALQPM 145
            V  +    G+   +  L   +  F  +          ++++R  +    V   L +  +
Sbjct: 76  IVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE--VAKILDIHHV 133
Query: 146 YT-----LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL---DAVEALIQGLVLFQG-G 196
                  LSGGQ+ RVA A+   K P ++LLDEP ++LD    D+  AL++ +    G  
Sbjct: 134 LNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVT 193
Query: 197 ILMVSHDEHLISGSVEELWVVSEGK 221
           +L+VSHD   I    + + V+ +GK
Sbjct: 194 LLVVSHDPADIFAIADRVGVLVKGK 218

>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 104/228 (45%), Gaps = 34/228 (14%)
Query: 29   ISFSDASFGYPGGPIL--FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86
            + FS   F YP  P +   + L+  +     +A+VG +G GKST+++L+     P +G+V
Sbjct: 1031 VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV 1090
Query: 87   FRSAKVRIAVFSQHHVDGLD-----LSSNPLLYMMRCFPGVP----------EQKLRA-- 129
            F   K       Q +V  L      +S  P+L+       +           E+ +RA  
Sbjct: 1091 FLDGKE----IKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAK 1146
Query: 130  ------HLGSFGVTGNLALQPMYT-LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA 182
                   + S     N  +    T LSGGQK R+A A+   ++PHI+LLDE ++ LD ++
Sbjct: 1147 EANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206
Query: 183  VEALIQGLVLFQGG--ILMVSHDEHLISGSVEELWVVSEGKATPFHGT 228
             + + + L   + G   ++++H    I  +  +L VV +      HGT
Sbjct: 1207 EKVVQEALDKAREGRTCIVIAHRLSTIQNA--DLIVVIQNGKVKEHGT 1252

>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 104/228 (45%), Gaps = 34/228 (14%)
Query: 29   ISFSDASFGYPGGPIL--FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86
            + FS   F YP  P +   + L+  +     +A+VG +G GKST+++L+     P +G+V
Sbjct: 1031 VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV 1090
Query: 87   FRSAKVRIAVFSQHHVDGLD-----LSSNPLLYMMRCFPGVP----------EQKLRA-- 129
            F   K       Q +V  L      +S  P+L+       +           E+ +RA  
Sbjct: 1091 FLDGKE----IKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAK 1146
Query: 130  ------HLGSFGVTGNLALQPMYT-LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA 182
                   + S     N  +    T LSGGQK R+A A+   ++PHI+LLDE ++ LD ++
Sbjct: 1147 EANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206
Query: 183  VEALIQGLVLFQGG--ILMVSHDEHLISGSVEELWVVSEGKATPFHGT 228
             + + + L   + G   ++++H    I  +  +L VV +      HGT
Sbjct: 1207 EKVVQEALDKAREGRTCIVIAHRLSTIQNA--DLIVVIQNGKVKEHGT 1252

>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 83/185 (44%), Gaps = 26/185 (14%)
Query: 28  IISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 85
           ++ F D SF YP  P  ++ + L F +      A+VGPNG GKST+  L+    QP+ G 
Sbjct: 14  LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQ 73
Query: 86  VFRSAK-----------VRIAVFSQH-HVDGLDLSSNPLLYMMRCFPGVPEQKLRA-HLG 132
           +    K            ++A   Q   V G  L  N + Y +   P + E    A   G
Sbjct: 74  LLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQEN-IAYGLTQKPTMEEITAAAVKSG 132
Query: 133 SFGVTGNLAL-------QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA--- 182
           +      L         +    LSGGQ+  VA A+   +KP +++LD+ ++ LD ++   
Sbjct: 133 AHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQ 192
Query: 183 VEALI 187
           VE L+
Sbjct: 193 VEQLL 197

>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 99/205 (48%), Gaps = 25/205 (12%)
Query: 40  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----RI 94
           G  +   N+N  I+   R  ++GP+G GK+T +++IAG   PS+G ++   ++     ++
Sbjct: 16  GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKL 75
Query: 95  AVFSQHHVDGLDLSSNPLLYMMRCFPGVP---------EQKLRAHLGSFGVTGNLALQPM 145
            V  +    G+   +  L   +  F  +          ++++R  +    V   L +  +
Sbjct: 76  IVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE--VAKILDIHHV 133
Query: 146 YT-----LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL---DAVEALIQGLVLFQG-G 196
                  LSG Q+ RVA A+   K P ++LLDEP ++LD    D+  AL++ +    G  
Sbjct: 134 LNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVT 193
Query: 197 ILMVSHDEHLISGSVEELWVVSEGK 221
           +L+VSHD   I    + + V+ +GK
Sbjct: 194 LLVVSHDPADIFAIADRVGVLVKGK 218

>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 102/238 (42%), Gaps = 58/238 (24%)
Query: 29  ISFSDASFGYPGGPI--LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86
           + F +  F YP  P   +F++ +  I   S  A+VGP+G GKST+L L+     P+SGT+
Sbjct: 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTI 401
Query: 87  FRSA-----------KVRIAVFSQ-------------------------HHVDGLDLSSN 110
                          + +I   SQ                           +  +   +N
Sbjct: 402 SLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVAN 461
Query: 111 PLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL 170
            + + +R FP    Q     +G  GV           LSGGQK R+A A+   K P I+L
Sbjct: 462 AVAF-IRNFP----QGFNTVVGEKGV----------LLSGGQKQRIAIARALLKNPKILL 506
Query: 171 LDEPSNHLDLDAVEALIQGLV--LFQG-GILMVSHDEHLISGSVEELWVVSEGKATPF 225
           LDE ++ LD +  E L+Q  +  L  G  +L+++H    I  +   + V+ +GK T +
Sbjct: 507 LDEATSALDAEN-EYLVQEALDRLMDGRTVLVIAHRLSTIKNA-NMVAVLDQGKITEY 562

>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 102/238 (42%), Gaps = 58/238 (24%)
Query: 29  ISFSDASFGYPGGPI--LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86
           + F +  F YP  P   +F++ +  I   S  A+VGP+G GKST+L L+     P+SGT+
Sbjct: 373 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTI 432
Query: 87  FRSA-----------KVRIAVFSQ-------------------------HHVDGLDLSSN 110
                          + +I   SQ                           +  +   +N
Sbjct: 433 SLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVAN 492
Query: 111 PLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL 170
            + + +R FP    Q     +G  GV           LSGGQK R+A A+   K P I+L
Sbjct: 493 AVAF-IRNFP----QGFNTVVGEKGV----------LLSGGQKQRIAIARALLKNPKILL 537
Query: 171 LDEPSNHLDLDAVEALIQGLV--LFQG-GILMVSHDEHLISGSVEELWVVSEGKATPF 225
           LDE ++ LD +  E L+Q  +  L  G  +L+++H    I  +   + V+ +GK T +
Sbjct: 538 LDEATSALDAEN-EYLVQEALDRLMDGRTVLVIAHHLSTIKNA-NMVAVLDQGKITEY 593

>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 76/181 (41%), Gaps = 37/181 (20%)
Query: 28  IISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 85
           ++ F D SF YP  P   + + L F +      A+VGPNG GKST+  L+    QP+ G 
Sbjct: 16  LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK 75
Query: 86  VFRSAKVRIAVFSQH--HVDGLDLSSNPLL----------YMMRCFPGVPEQKLRA---- 129
           V    +  +  +  H  H     +   PLL          Y +   P + E    A    
Sbjct: 76  VLLDGEPLVQ-YDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESG 134
Query: 130 -----------HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 178
                      +    G TGN        LSGGQ+  VA A+   +KP +++LD+ ++ L
Sbjct: 135 AHDFISGFPQGYDTEVGETGN-------QLSGGQRQAVALARALIRKPRLLILDQATSAL 187
Query: 179 D 179
           D
Sbjct: 188 D 188

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 44/195 (22%)
Query: 29   ISFSDASFGYPGGPIL--FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86
            + F +  F YP  P +   K L+F ++    +A+VGP+G GKST++ L+        G +
Sbjct: 1077 VIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEI 1136
Query: 87   F-----------RSAKVRIAVFSQ-----------HHVDGLDLSSNPLLYMMRCFPGVPE 124
            F              + +IA+ SQ           + + GLD SS  +         V E
Sbjct: 1137 FIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTM-------AQVEE 1189
Query: 125  QKLRAHLGSF---------GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS 175
                A++ +F            G+   Q    LSGGQK R+A A+   + P I+LLDE +
Sbjct: 1190 AARLANIHNFIAELPEGFETRVGDRGTQ----LSGGQKQRIAIARALVRNPKILLLDEAT 1245
Query: 176  NHLDLDAVEALIQGL 190
            + LD ++ + + + L
Sbjct: 1246 SALDTESEKVVQEAL 1260

>pdb|1G29|1 Chain 1, Malk Length = 372

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 71/141 (50%), Gaps = 24/141 (17%)
Query: 60  MVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV---------------RIAVFSQH---- 100
           ++GP+G GK+T L++IAG  +PS G ++   K+                IA+  Q     
Sbjct: 34  LLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALY 93
Query: 101 -HVDGLDLSSNPLLYMMRCFPGVP-EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF 158
            H+   D  + PL   +R  P    +Q++R      G+T  L  +P   LSGGQ+ RVA 
Sbjct: 94  PHMTVYDNIAFPL--KLRKVPRQEIDQRVREVAELLGLTELLNRKP-RELSGGQRQRVAL 150
Query: 159 AKITFKKPHIILLDEPSNHLD 179
            +   +KP + L+DEP ++LD
Sbjct: 151 GRAIVRKPQVFLMDEPLSNLD 171

>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 96/215 (44%), Gaps = 27/215 (12%)
Query: 29  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV-- 86
           I F +  F Y  G    ++++F +     +A+VGP+G GKSTIL+L+      SSG +  
Sbjct: 54  IEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRI 113
Query: 87  -------FRSAKVR--IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVT 137
                     A +R  I V  Q  V   D  ++ + Y  R   G  E  + A   + G+ 
Sbjct: 114 DGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRY-GRVTAGNDE--VEAAAQAAGIH 170
Query: 138 GNLALQPM----------YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALI 187
             +   P             LSGG+K RVA A+   K P IILLDE ++ LD     A+ 
Sbjct: 171 DAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQ 230
Query: 188 QGL--VLFQGGILMVSHDEHLISGSVEELWVVSEG 220
             L  V      ++V+H    +  + +++ V+ +G
Sbjct: 231 ASLAKVCANRTTIVVAHRLSTVVNA-DQILVIKDG 264

>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 75/181 (41%), Gaps = 37/181 (20%)
Query: 28  IISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 85
           ++ F D SF YP  P   + + L F +      A+VGPNG GKST+  L+    QP+ G 
Sbjct: 16  LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK 75
Query: 86  VFRSAKVRIAVFSQH--HVDGLDLSSNPLL----------YMMRCFPGVPEQKLRA---- 129
           V    +  +  +  H  H     +   PLL          Y +   P + E    A    
Sbjct: 76  VLLDGEPLVQ-YDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESG 134
Query: 130 -----------HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 178
                      +    G TGN        LSGGQ+  VA A+   +KP +++LD  ++ L
Sbjct: 135 AHDFISGFPQGYDTEVGETGN-------QLSGGQRQAVALARALIRKPRLLILDNATSAL 187
Query: 179 D 179
           D
Sbjct: 188 D 188

>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 89/195 (45%), Gaps = 22/195 (11%)
Query: 58  IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR 117
           I +VGPNGIGK+T +K++AG  +P+ G V     + +A   Q+     + +   LL    
Sbjct: 385 IGIVGPNGIGKTTFVKMLAGVEEPTEGKV--EWDLTVAYKPQYIKAEYEGTVYELL---- 438
Query: 118 CFPGVPEQKLRAHLGSFGVTGNLALQPMYT-----LSGGQKSRVAFAKITFKKPHIILLD 172
               +   KL ++     +   L +  +Y      LSGG+  RVA A    +   I LLD
Sbjct: 439 --SKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLD 496
Query: 173 EPSNHLDLD---AVEALIQGLV-LFQGGILMVSHDEHLISGSVEELWVVS-----EGKAT 223
           EPS +LD++   AV   I+ L+   +   L+V HD  +I    + L V        G+A 
Sbjct: 497 EPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRAL 556
Query: 224 PFHGTFHDYKKMLQS 238
           P  G      + L S
Sbjct: 557 PPMGMREGMNRFLAS 571

>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 89/195 (45%), Gaps = 22/195 (11%)
Query: 58  IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR 117
           I +VGPNGIGK+T +K++AG  +P+ G V     + +A   Q+    +       +Y + 
Sbjct: 371 IGIVGPNGIGKTTFVKMLAGVEEPTEGKV--EWDLTVAYKPQY----IKAEYEGTVYEL- 423
Query: 118 CFPGVPEQKLRAHLGSFGVTGNLALQPMYT-----LSGGQKSRVAFAKITFKKPHIILLD 172
               +   KL ++     +   L +  +Y      LSGG+  RVA A    +   I LLD
Sbjct: 424 -LSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLD 482
Query: 173 EPSNHLDLD---AVEALIQGLV-LFQGGILMVSHDEHLISGSVEELWVVS-----EGKAT 223
           EPS +LD++   AV   I+ L+   +   L+V HD  +I    + L V        G+A 
Sbjct: 483 EPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRAL 542
Query: 224 PFHGTFHDYKKMLQS 238
           P  G      + L S
Sbjct: 543 PPMGMREGMNRFLAS 557

>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 84/184 (45%), Gaps = 16/184 (8%)
Query: 58  IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR 117
           +A++GP+G GK+T L ++AG  +P+SG ++    +   +  ++   G+   +  L   M 
Sbjct: 32  VALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMT 91
Query: 118 CFPGVP------------EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK 165
            F  +              +K    +    +  NL  +    LSGGQ+ RVA A+   K+
Sbjct: 92  VFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQ 151
Query: 166 PHIILLDEPSNHLDLDAVEALIQGLVLFQGGI----LMVSHDEHLISGSVEELWVVSEGK 221
           P ++L DEP ++LD +    +   +   Q  +    + V+HD+         + V ++GK
Sbjct: 152 PKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGK 211
Query: 222 ATPF 225
              +
Sbjct: 212 LVQY 215

>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 92/205 (44%), Gaps = 29/205 (14%)
Query: 28  IISFSDASFGYP-GGPILF--KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 84
           +I   + +  Y  G  I++  KN+N  I     ++++GP+G GKST+L +I    +P+ G
Sbjct: 1   MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 85  TVF------------RSAKVRIA----VFSQHHV----DGLDLSSNPLLYMMRCFPGVPE 124
            V+               K+R      VF Q ++      L+    PL++  R      E
Sbjct: 61  EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120
Query: 125 QKLRA--HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA 182
           ++ RA   L    +    A      LSGGQ+ RVA A+     P IIL D+P+  LD   
Sbjct: 121 RRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKT 180
Query: 183 VEALIQGLVLFQ----GGILMVSHD 203
            E ++Q L          +++V+HD
Sbjct: 181 GEKIMQLLKKLNEEDGKTVVVVTHD 205

>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 86/204 (42%), Gaps = 29/204 (14%)
Query: 29  ISFSDASFGYPGGPIL---FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 85
           I   + +  Y  G  +    KN+N  I     +++ GP+G GKST L +I    +P+ G 
Sbjct: 2   IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 86  VF------------RSAKVRIA----VFSQHHV----DGLDLSSNPLLYMMRCFPGVPEQ 125
           V+               K+R      VF Q ++      L+    PL++  R      E+
Sbjct: 62  VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEER 121
Query: 126 KLRA--HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV 183
           + RA   L    +    A      LSGGQ+ RVA A+     P IIL DEP+  LD    
Sbjct: 122 RKRALECLKXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTG 181
Query: 184 EALIQGLVLFQ----GGILMVSHD 203
           E + Q L          +++V+HD
Sbjct: 182 EKIXQLLKKLNEEDGKTVVVVTHD 205

>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 92/203 (45%), Gaps = 43/203 (21%)
Query: 29  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--------- 79
           I  +  SF Y G  +L K++N   +      +VG NG GK+T+LK++AG L         
Sbjct: 12  IELNSVSFRYNGDYVL-KDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAAGEIFLD 70
Query: 80  ---------QPSSGTVFRS-------AKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP 123
                    + + G VF++       A V   V     + GLD S       MR      
Sbjct: 71  GSPADPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESE------MR------ 118
Query: 124 EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV 183
            ++++  L   G++G  A  P+  LSGGQK R+A A +  +    + LDEP + LD  + 
Sbjct: 119 -KRIKKVLELVGLSGLAAADPL-NLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQ 176
Query: 184 EALIQGLVLFQG---GILMVSHD 203
             + Q L   +    GI++V+H+
Sbjct: 177 REIFQVLESLKNEGKGIILVTHE 199

>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 92/205 (44%), Gaps = 29/205 (14%)
Query: 28  IISFSDASFGYP-GGPILF--KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 84
           ++   + +  Y  G  I++  KN+N  I     ++++GP+G GKST+L +I    +P+ G
Sbjct: 1   MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 85  TVF------------RSAKVRIA----VFSQHHV----DGLDLSSNPLLYMMRCFPGVPE 124
            V+               K+R      VF Q ++      L+    PL++  R      E
Sbjct: 61  EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120
Query: 125 QKLRA--HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA 182
           ++ RA   L    +    A      LSGGQ+ RVA A+     P IIL D+P+  LD   
Sbjct: 121 RRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKT 180
Query: 183 VEALIQGLVLFQ----GGILMVSHD 203
            E ++Q L          +++V+HD
Sbjct: 181 GEKIMQLLKKLNEEDGKTVVVVTHD 205

>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 98/212 (46%), Gaps = 17/212 (8%)
Query: 37  GYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAV 96
           G P      +N++  I+    + + G  G GKST+L+++AG ++P+SG V    + +   
Sbjct: 15  GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY 74
Query: 97  FSQHHVDGLDLSSNPLLYMMRCFPGV------------PEQKLRAHLGSFGVT-GNLALQ 143
             + ++           +  R F  V            P   ++  +   G+   +   +
Sbjct: 75  EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDR 134
Query: 144 PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQ---GGILMV 200
             + LSGG+K RVA A +   +P I++LDEP   LD +    L++ +  ++     ++++
Sbjct: 135 VPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILI 194
Query: 201 SHDEHLISGSVEELWVVSEGKATPFHGTFHDY 232
           SHD   +   V+ + V+ +GK   F GT  ++
Sbjct: 195 SHDIETVINHVDRVVVLEKGKKV-FDGTRMEF 225

>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 98/212 (46%), Gaps = 17/212 (8%)
Query: 37  GYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAV 96
           G P      +N++  I+    + + G  G GKST+L+++AG ++P+SG V    + +   
Sbjct: 17  GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY 76
Query: 97  FSQHHVDGLDLSSNPLLYMMRCFPGV------------PEQKLRAHLGSFGVT-GNLALQ 143
             + ++           +  R F  V            P   ++  +   G+   +   +
Sbjct: 77  EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDR 136
Query: 144 PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQ---GGILMV 200
             + LSGG+K RVA A +   +P I++LDEP   LD +    L++ +  ++     ++++
Sbjct: 137 VPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILI 196
Query: 201 SHDEHLISGSVEELWVVSEGKATPFHGTFHDY 232
           SHD   +   V+ + V+ +GK   F GT  ++
Sbjct: 197 SHDIETVINHVDRVVVLEKGKKV-FDGTRMEF 227

>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 92/201 (45%), Gaps = 24/201 (11%)
Query: 44  LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF------------RSAK 91
           L  +++  I     +A++GPNG GKST+L+L+ G L PS G                 A+
Sbjct: 26  LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR 85
Query: 92  VRIAVFSQHHVDGLDLSSNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSG 150
            R AV  Q+       S + ++ M R  + G  +++    + +      LA +    LSG
Sbjct: 86  TR-AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSG 144
Query: 151 GQKSRVAFAKITFK------KPHIILLDEPSNHLDLDAVEALIQGLVLFQG----GILMV 200
           G++ RV  A++  +       P  + LDEP++ LDL   +  ++ L          +  V
Sbjct: 145 GEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCV 204
Query: 201 SHDEHLISGSVEELWVVSEGK 221
            HD +L +   + + ++++GK
Sbjct: 205 LHDLNLAALYADRIMLLAQGK 225

>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 74/157 (47%), Gaps = 28/157 (17%)
Query: 46  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT--------------VFRSAK 91
           K+L+  I     + ++GP+G GK+T L+ IAG  +P+ G               VF   K
Sbjct: 23  KDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPK 82
Query: 92  VR-IAVFSQHHVDGLDLSSNPLLYMMRCFP----GVPEQ----KLRAHLGSFGVTGNLAL 142
            R +A   Q +     L  +  +Y    FP     VP+Q    ++R      G+T  L  
Sbjct: 83  ERDVAXVFQSYA----LYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNR 138
Query: 143 QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
           +P   LSGGQ+ RVA  +   ++P + L DEP ++LD
Sbjct: 139 KPR-ELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLD 174

>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 99/217 (45%), Gaps = 28/217 (12%)
Query: 29  ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           I+F +  F Y P  P++  N+N  I     I +VG +G GKST+ KLI     P +G V 
Sbjct: 4   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 63
Query: 88  RSA-----------KVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV 136
                         + ++ V  Q   D + L+ + +  +    PG+  +K+       G 
Sbjct: 64  IDGHDLALADPNWLRRQVGVVLQ---DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 137 TGNLA-LQPMYT---------LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 186
              ++ L+  Y          LSGGQ+ R+A A+     P I++ DE ++ LD ++   +
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 187 IQGLVLFQGG--ILMVSHDEHLISGSVEELWVVSEGK 221
           ++ +     G  +++++H    +  + + + V+ +GK
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNA-DRIIVMEKGK 216

>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 99/217 (45%), Gaps = 28/217 (12%)
Query: 29  ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           I+F +  F Y P  P++  N+N  I     I +VG +G GKST+ KLI     P +G V 
Sbjct: 2   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 88  RSA-----------KVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV 136
                         + ++ V  Q   D + L+ + +  +    PG+  +K+       G 
Sbjct: 62  IDGHDLALADPNWLRRQVGVVLQ---DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 137 TGNLA-LQPMYT---------LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 186
              ++ L+  Y          LSGGQ+ R+A A+     P I++ DE ++ LD ++   +
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 187 IQGLVLFQGG--ILMVSHDEHLISGSVEELWVVSEGK 221
           ++ +     G  +++++H    +  + + + V+ +GK
Sbjct: 179 MRNMHKICKGRTVIIIAHRLSTVKNA-DRIIVMEKGK 214

>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 99/217 (45%), Gaps = 28/217 (12%)
Query: 29  ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           I+F +  F Y P  P++  N+N  I     I +VG +G GKST+ KLI     P +G V 
Sbjct: 8   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 88  RSA-----------KVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV 136
                         + ++ V  Q   D + L+ + +  +    PG+  +K+       G 
Sbjct: 68  IDGHDLALADPNWLRRQVGVVLQ---DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 137 TGNLA-LQPMYT---------LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 186
              ++ L+  Y          LSGGQ+ R+A A+     P I++ DE ++ LD ++   +
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 187 IQGLVLFQGG--ILMVSHDEHLISGSVEELWVVSEGK 221
           ++ +     G  +++++H    +  + + + V+ +GK
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNA-DRIIVMEKGK 220

>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 98/217 (45%), Gaps = 28/217 (12%)
Query: 29  ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           I+F +  F Y P  P++  N+N  I     I +VG  G GKST+ KLI     P +G V 
Sbjct: 4   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVL 63
Query: 88  RSA-----------KVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV 136
                         + ++ V  Q   D + L+ + +  +    PG+  +K+       G 
Sbjct: 64  IDGHDLALADPNWLRRQVGVVLQ---DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 137 TGNLA-LQPMYT---------LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 186
              ++ L+  Y          LSGGQ+ R+A A+     P I++ DE ++ LD ++   +
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 187 IQGLVLFQGG--ILMVSHDEHLISGSVEELWVVSEGK 221
           ++ +     G  +++++H    +  + + + V+ +GK
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNA-DRIIVMEKGK 216

>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 98/225 (43%), Gaps = 24/225 (10%)
Query: 29  ISFSDASFGYPGGPI-LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV- 86
           + F + +F YPG  +   +N+N  I     +A+VG +G GKSTI  LI        G + 
Sbjct: 342 VEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEIL 401
Query: 87  ----------FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGVPEQKLRAHLGS 133
                       S + ++A+ SQ+     D  +N + Y          + E    A+   
Sbjct: 402 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMD 461
Query: 134 FGVTGNLALQPM-----YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 188
           F    +  L  +       LSGGQ+ R+A A+   +   I++LDE ++ LD ++  A+  
Sbjct: 462 FINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA 521
Query: 189 GLVLFQGG--ILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD 231
            L   Q     L+++H    I  + +E+ VV +G      GT +D
Sbjct: 522 ALDELQKNRTSLVIAHRLSTIEKA-DEIVVVEDGVIVE-RGTHND 564

>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 74/181 (40%), Gaps = 37/181 (20%)
Query: 28  IISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT 85
           ++ F D SF YP  P   + + L F +      A+VGPNG GKST+  L+    QP+ G 
Sbjct: 16  LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK 75
Query: 86  VFRSAKVRIAVFSQH--HVDGLDLSSNPLL----------YMMRCFPGVPEQKLRA---- 129
           V    +  +  +  H  H     +   PLL          Y +   P + E    A    
Sbjct: 76  VLLDGEPLVQ-YDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESG 134
Query: 130 -----------HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 178
                      +    G TGN        L+ GQ+  VA A+   +KP +++LD  ++ L
Sbjct: 135 AHDFISGFPQGYDTEVGETGN-------QLAVGQRQAVALARALIRKPRLLILDNATSAL 187
Query: 179 D 179
           D
Sbjct: 188 D 188

>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 106/230 (46%), Gaps = 48/230 (20%)
Query: 28  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV- 86
           ++S     F Y     + ++++F    +S IA  GP+G GKSTI  L+    QP++G + 
Sbjct: 1   MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 87  ----------FRSAKVRIAVFSQ--------------HHVDGLDLSSNPL-----LYMMR 117
                       + + +I   SQ              + ++G D +   L     L   R
Sbjct: 61  IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEG-DYTDEDLWQVLDLAFAR 119
Query: 118 CF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 176
            F   +P+Q L   +G  GV           +SGGQ+ R+A A+   + P I++LDE + 
Sbjct: 120 SFVENMPDQ-LNTEVGERGVK----------ISGGQRQRLAIARAFLRNPKILMLDEATA 168
Query: 177 HLDLDAVEALIQGLV--LFQG-GILMVSHDEHLISGSVEELWVVSEGKAT 223
            LD ++ E+++Q  +  L +G   L+++H    I  + ++++ + +G+ T
Sbjct: 169 SLDSES-ESMVQKALDSLMKGRTTLVIAHRLSTIVDA-DKIYFIEKGQIT 216

>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 11/160 (6%)
Query: 29  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 88
           +S  +  F Y     LF+ LNF ++    +A++G NG GKST+L L+ G  +P  G +  
Sbjct: 5   LSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI-- 62
Query: 89  SAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH--------LGSFGVTGNL 140
                I    Q        S   ++ M R        K ++H        L    +T +L
Sbjct: 63  EVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLT-HL 121
Query: 141 ALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 180
           A +   +LSGGQ+  +  A+    +  +ILLDEP++ LDL
Sbjct: 122 AKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDL 161

>pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 17/155 (10%)
Query: 58  IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR 117
           I +VGPNGIGK+T +K +AG  +P+ G +     + +A   Q+      + ++    +  
Sbjct: 315 IGIVGPNGIGKTTFVKXLAGVEEPTEGKI--EWDLTVAYKPQY------IKADYEGTVYE 366
Query: 118 CFPGVPEQKLRAHLGSFGVTGNLALQPMY-----TLSGGQKSRVAFAKITFKKPHIILLD 172
               +   KL ++     +   L +  +Y      LSGG+  RVA A    +   I LLD
Sbjct: 367 LLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLD 426
Query: 173 EPSNHLDLD---AVEALIQGLV-LFQGGILMVSHD 203
           EPS +LD++   AV   I+ L    +   L+V HD
Sbjct: 427 EPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHD 461

>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 25/184 (13%)
Query: 29  ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           I+F +  F Y P  P++  N+N  I     I +VG +G GKST+ KLI     P +G V 
Sbjct: 2   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 88  RSA-----------KVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV 136
                         + ++ V  Q   D + L+ + +  +    PG+  +K+       G 
Sbjct: 62  IDGHDLALADPNWLRRQVGVVLQ---DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 137 TGNLA-LQPMYT---------LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 186
              ++ L+  Y          LSGGQ+ R+A A+     P I++ DE ++ LD ++   +
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 187 IQGL 190
           ++ +
Sbjct: 179 MRNM 182

>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 25/184 (13%)
Query: 29  ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           I+F +  F Y P  P++  N+N  I     I +VG +G GKST+ KLI     P +G V 
Sbjct: 8   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 88  RSA-----------KVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV 136
                         + ++ V  Q   D + L+ + +  +    PG+  +K+       G 
Sbjct: 68  IDGHDLALADPNWLRRQVGVVLQ---DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 137 TGNLA-LQPMYT---------LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 186
              ++ L+  Y          LSGGQ+ R+A A+     P I++ DE ++ LD ++   +
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 187 IQGL 190
           ++ +
Sbjct: 185 MRNM 188

>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 99/217 (45%), Gaps = 28/217 (12%)
Query: 29  ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           I+F +  F Y P  P++  N+N  I     I +VG +G GKST+ KLI     P +G V 
Sbjct: 8   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 88  RSA-----------KVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV 136
                         + ++ V  Q   D + L+ + +  +    PG+  +K+       G 
Sbjct: 68  IDGHDLALADPNWLRRQVGVVLQ---DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 137 TGNLA-LQPMYT---------LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 186
              ++ L+  Y          LSGGQ+ R+A A+     P I++ D+ ++ LD ++   +
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVI 184
Query: 187 IQGLVLFQGG--ILMVSHDEHLISGSVEELWVVSEGK 221
           ++ +     G  +++++H    +  + + + V+ +GK
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNA-DRIIVMEKGK 220

>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 103/233 (44%), Gaps = 33/233 (14%)
Query: 29  ISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI------AGELQ 80
           I FSD +F YP        K++NF I   +  A+VG  G GKSTI KL+       G+++
Sbjct: 18  IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIK 77
Query: 81  PSSGTVFR----SAKVRIAVFSQHHVDGLDLSSNPLLY--MMRCFPGVPEQKLRAHLGSF 134
                V +    S +  I +  Q  +   +     +LY  +      V +    A L  F
Sbjct: 78  IGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDF 137
Query: 135 ---------GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEA 185
                     + GN  ++    LSGG++ R+A A+   K P I++ DE ++ LD    E 
Sbjct: 138 IEALPKKWDTIVGNKGMK----LSGGERQRIAIARCLLKDPKIVIFDEATSSLD-SKTEY 192
Query: 186 LIQGLV---LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM 235
           L Q  V        +++++H    IS S E + ++++GK     GT  D  K+
Sbjct: 193 LFQKAVEDLRKNRTLIIIAHRLSTIS-SAESIILLNKGKIVE-KGTHKDLLKL 243

>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 82/188 (43%), Gaps = 13/188 (6%)
Query: 47  NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 106
           NL+  ++      ++GP G GK+  L+LIAG   P SG +    K    +  + H     
Sbjct: 18  NLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77
Query: 107 LSSNPLLYMMRCFP----GVPEQKLRAHLGSFGVTGNLALQPMY-----TLSGGQKSRVA 157
             +  L   M        G+  +K++          +L ++ +      TLSGG++ RVA
Sbjct: 78  YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVA 137
Query: 158 FAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGG----ILMVSHDEHLISGSVEE 213
            A+     P I+LLDEP + LD    E   + L +        +L ++HD+       + 
Sbjct: 138 LARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADR 197
Query: 214 LWVVSEGK 221
           + VV +GK
Sbjct: 198 IAVVMDGK 205

>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 25/186 (13%)
Query: 44  LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF---------------- 87
           + K ++  +     ++++G +G GKST+L ++     P+ G VF                
Sbjct: 19  ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 88  -RSAKVRIAVFSQHH-VDGLDLSSNPLLYMMRCFPGVPEQKLRAH--LGSFGVTGNLALQ 143
            R+ K+   VF  H+ +  L    N ++ M++      E K R    L   G+   L+ +
Sbjct: 79  LRNRKLGF-VFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRK 137
Query: 144 PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ-GLVLFQGG--ILMV 200
           P Y LSGG++ RVA A+    +P ++  DEP+ +LD    + ++   L + +GG  I+MV
Sbjct: 138 P-YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMV 196
Query: 201 SHDEHL 206
           +H+  L
Sbjct: 197 THEREL 202

>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582

Iteration: 1
 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 99/237 (41%), Gaps = 30/237 (12%)
Query: 29  ISFSDASFGYPGGPI-LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV- 86
           + F + +F YPG  +   +N+N  I     +A+VG +G GKSTI  LI        G + 
Sbjct: 342 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 401
Query: 87  ----------FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGVPEQKLRAHLGS 133
                       S + ++A+ SQ+     D  +N + Y          + E    A+   
Sbjct: 402 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMD 461
Query: 134 FGVTGNLALQPM-----YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 188
           F    +  L  +       LSGGQ+ R+A A+   +   I++LDE ++ LD ++  A+  
Sbjct: 462 FINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA 521
Query: 189 GLVLFQGG--ILMVSHDEHLISGS-----VEELWVVSEGKATPF---HGTFHDYKKM 235
            L   Q     L+++H    I  +     VE+  +V  G  +     HG +    KM
Sbjct: 522 ALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKM 578

>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 14/153 (9%)
Query: 40  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR------ 93
           G  ++ K++N  I     +  VGP+G GKST+L++IAG    +SG +F   K        
Sbjct: 14  GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA 73
Query: 94  ---IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----LQPMY 146
              + +  Q +     LS    +       G  ++ +   +        LA     +P  
Sbjct: 74  ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-K 132
Query: 147 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
            LSGGQ+ RVA  +    +P + LLDEP ++LD
Sbjct: 133 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165

>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 14/153 (9%)
Query: 40  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR------ 93
           G  ++ K++N  I     +  VGP+G GKST+L++IAG    +SG +F   K        
Sbjct: 14  GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA 73
Query: 94  ---IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----LQPMY 146
              + +  Q +     LS    +       G  ++ +   +        LA     +P  
Sbjct: 74  ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-K 132
Query: 147 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
            LSGGQ+ RVA  +    +P + LLDEP ++LD
Sbjct: 133 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165

>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 73/142 (51%), Gaps = 9/142 (6%)
Query: 45  FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA----KVRIAV-FSQ 99
            +N+N  ++   ++ ++GPNG GK+T+L+ I+G L P SG +F +     K+R  + +S 
Sbjct: 21  LENINLEVN-GEKVIILGPNGSGKTTLLRAISG-LLPYSGNIFINGMEVRKIRNYIRYST 78
Query: 100 HHVDGLDL--SSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVA 157
           +  +  ++  + N ++Y+     G+        L +  +   +  + +Y LS GQ   V 
Sbjct: 79  NLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVR 138
Query: 158 FAKITFKKPHIILLDEPSNHLD 179
            +     +P I+ LDEP  ++D
Sbjct: 139 TSLALASQPEIVGLDEPFENVD 160

>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 24/178 (13%)
Query: 47  NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF-----------RSAKVRIA 95
            LN  I     + ++GP+G GK+T L++IAG  +P+ G ++           +   + + 
Sbjct: 29  KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM- 87
Query: 96  VFSQH----HVDGLDLSSNPLLYMMRCFPGVP-EQKLRAHLGSFGVTGNLALQPMYTLSG 150
           VF  +    H+   +  + PL   ++ FP    ++++R       +   L   P   LSG
Sbjct: 88  VFQSYAVWPHMTVYENIAFPL--KIKKFPKDEIDKRVRWAAELLQIEELLNRYPA-QLSG 144
Query: 151 GQKSRVAFAKITFKKPHIILLDEPSNHLDLD---AVEALIQGLVL-FQGGILMVSHDE 204
           GQ+ RVA A+    +P ++L+DEP ++LD     A+ A I+ L    +   + V+HD+
Sbjct: 145 GQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ 202

>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 24/178 (13%)
Query: 47  NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF-----------RSAKVRIA 95
            LN  I     + ++GP+G GK+T L++IAG  +P+ G ++           +   + + 
Sbjct: 30  KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM- 88
Query: 96  VFSQH----HVDGLDLSSNPLLYMMRCFPGVP-EQKLRAHLGSFGVTGNLALQPMYTLSG 150
           VF  +    H+   +  + PL   ++ FP    ++++R       +   L   P   LSG
Sbjct: 89  VFQSYAVWPHMTVYENIAFPL--KIKKFPKDEIDKRVRWAAELLQIEELLNRYPA-QLSG 145
Query: 151 GQKSRVAFAKITFKKPHIILLDEPSNHLDLD---AVEALIQGLVL-FQGGILMVSHDE 204
           GQ+ RVA A+    +P ++L+DEP ++LD     A+ A I+ L    +   + V+HD+
Sbjct: 146 GQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ 203

>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 90/209 (43%), Gaps = 53/209 (25%)
Query: 49  NFGIDLDSRI-----AMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVD 103
           NF +++D  +      ++GP G GKS  L+LIAG ++P  G V               ++
Sbjct: 13  NFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEV--------------RLN 58
Query: 104 GLDLSSNPLLYMMRCFPGVPEQ-KLRAHLGSF--------------------------GV 136
           G D++  PL    R    VP+   L  HL  +                          G+
Sbjct: 59  GADIT--PLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGI 116
Query: 137 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGG 196
              L  +P   LSGG++ RVA A+    +P ++LLDEP + +DL     L++ L   Q  
Sbjct: 117 AHLLDRKPA-RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQRE 175
Query: 197 ----ILMVSHDEHLISGSVEELWVVSEGK 221
               IL V+HD    +   +E+ V+  G+
Sbjct: 176 FDVPILHVTHDLIEAAMLADEVAVMLNGR 204

>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 95/233 (40%), Gaps = 59/233 (25%)
Query: 29  ISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86
           +   D +F Y G   P L  +++F I     +A+VG +G GKSTI  L        SG++
Sbjct: 342 VDVKDVTFTYQGKEKPAL-SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSI 400
Query: 87  FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL--QP 144
                          +DG D+    L  + R F  V +     HL +  +  N+A   + 
Sbjct: 401 C--------------LDGHDVRDYKLTNLRRHFALVSQN---VHLFNDTIANNIAYAAEG 443
Query: 145 MYT----------------------------------LSGGQKSRVAFAKITFKKPHIIL 170
            YT                                  LSGGQ+ RVA A+   +   +++
Sbjct: 444 EYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLI 503
Query: 171 LDEPSNHLDLDAVEALIQGLVLFQGG--ILMVSHDEHLISGSVEELWVVSEGK 221
           LDE ++ LD ++  A+   L   Q    +L+++H    I  + +E+ VV EG+
Sbjct: 504 LDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQA-DEILVVDEGE 555

>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 14/153 (9%)
Query: 40  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR------ 93
           G  ++ K++N  I     +  VGP+G GKST+L++IAG    +SG +F   K        
Sbjct: 14  GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA 73
Query: 94  ---IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----LQPMY 146
              + +  Q +     LS    +       G  ++ +   +        LA     +P  
Sbjct: 74  ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-K 132
Query: 147 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
            LSGGQ+ RVA  +    +P + LLD+P ++LD
Sbjct: 133 ALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLD 165

>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 87/195 (44%), Gaps = 14/195 (7%)
Query: 29  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR 88
           +   D S GY   P+L + +   I+  + +   GPNGIGK+T+LK I+  L+P  G +  
Sbjct: 11  LEIRDLSVGY-DKPVL-ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIY 68
Query: 89  S----AKVRIAVF--SQHHVDGLDLSSNPLLYMMRCFPGVPEQK--LRAHLGSFGVTGNL 140
           +     KV+  +F   +  +    +S    L  +    GV   K  +   L S  V    
Sbjct: 69  NGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD-- 126
Query: 141 ALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL--VLFQGGIL 198
             + +  LS G   RV  A        I +LD+P   +D D+   +++ +  +L + GI+
Sbjct: 127 LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 186
Query: 199 MVSHDEHLISGSVEE 213
           ++S  E L    V E
Sbjct: 187 IISSREELSYCDVNE 201

>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 97/213 (45%), Gaps = 33/213 (15%)
Query: 35  SFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRI 94
           S  +   P+L  +++  +D    + ++G +G GK+T+L+ +AG  QP SG +  S K   
Sbjct: 11  SKSFQNTPVL-NDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKT-- 67
Query: 95  AVFSQHHVDGLDLSSNPLLYMMR---CFPGVP-------------------EQKLRAHLG 132
            +FS++    L +    L Y+++    FP +                     Q++ A L 
Sbjct: 68  -IFSKN--TNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLE 124
Query: 133 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD----LDAVEALIQ 188
             G++  LA +  + LSGGQ+ R A A+     P +ILLDEP + LD        E +I 
Sbjct: 125 LTGIS-ELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIA 183
Query: 189 GLVLFQGGILMVSHDEHLISGSVEELWVVSEGK 221
            L       + VSHD        + + V+ +G+
Sbjct: 184 ALRANGKSAVFVSHDREEALQYADRIAVMKQGR 216

>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 103/244 (42%), Gaps = 54/244 (22%)
Query: 29  ISFSDASFGY--PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86
           +SF +  F Y     P+L   +NF +   S +A++G  G GKST++ LI   + P  G V
Sbjct: 342 VSFENVEFRYFENTDPVL-SGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRV 400
Query: 87  FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQ--------KLRAHLGSFGVTG 138
                          VD LD+ +  L  +      VP++        K     G    T 
Sbjct: 401 --------------EVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATD 446
Query: 139 N---------------LALQPMY---------TLSGGQKSRVAFAKITFKKPHIILLDEP 174
           +               ++L   Y           SGGQK R++ A+   KKP +++LD+ 
Sbjct: 447 DEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDC 506
Query: 175 SNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSV-EELWVVSEGKATPFHGTFHDYK 233
           ++ +D    + ++ GL  +  G       + + +  + +++ V+ EGK   F GT   +K
Sbjct: 507 TSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGF-GT---HK 562
Query: 234 KMLQ 237
           ++L+
Sbjct: 563 ELLE 566

>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 95/227 (41%), Gaps = 52/227 (22%)
Query: 51  GIDLD----SRIAMVGPNGIGKSTILKLIAGELQPS----SGTVF---------RSAKVR 93
           GI LD    S  A+VG +  GKSTI++ +   L P+    SG V          R  ++R
Sbjct: 26  GISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELR 85
Query: 94  ------IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPE----------------QKLR-AH 130
                 IA+  Q     L    NP + ++  F    E                +KLR   
Sbjct: 86  KIRWKEIALVPQAAQQSL----NPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVR 141
Query: 131 LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL 190
           L    V  +  LQ    LSGG K RV  A      P +++LDEP++ LD+     +IQ L
Sbjct: 142 LNPEAVLNSYPLQ----LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLL 197
Query: 191 VLFQG----GILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK 233
              +      ++ V+HD  + +   +++ V+  G    ++ TF  +K
Sbjct: 198 KELKKMLKITLIFVTHDIAVAAELADKVAVIYGGNLVEYNSTFQIFK 244

>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 85/193 (44%), Gaps = 48/193 (24%)
Query: 29  ISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86
           I     SF Y     PIL K++N  I+    +A VG +G GKST++ LI      +SG +
Sbjct: 340 IDIDHVSFQYNDNEAPIL-KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI 398
Query: 87  ---------FRSAKVR--IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKL-------R 128
                    F +  +R  I +  Q   D +  S      ++   P   ++++        
Sbjct: 399 LIDGHNIKDFLTGSLRNQIGLVQQ---DNILFSDTVKENILLGRPTATDEEVVEAAKMAN 455
Query: 129 AH-------------LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS 175
           AH             +G  GV           LSGGQK R++ A+I    P I++LDE +
Sbjct: 456 AHDFIMNLPQGYDTEVGERGVK----------LSGGQKQRLSIARIFLNNPPILILDEAT 505
Query: 176 NHLDLDAVEALIQ 188
           + LDL++ E++IQ
Sbjct: 506 SALDLES-ESIIQ 517

>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 33/183 (18%)
Query: 55  DSRI-AMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLL 113
           DS I  M+G NG GK+T++KL+AG L+P  G                 +  L++S  P  
Sbjct: 377 DSEILVMMGENGTGKTTLIKLLAGALKPDEG---------------QDIPKLNVSMKPQK 421
Query: 114 YMMRCFPGVPEQ----KLRAHLGSFGVTGNLAL---------QPMYTLSGGQKSRVAFAK 160
              + FPG   Q    K+R    +     ++           Q +  LSGG+  RVA   
Sbjct: 422 IAPK-FPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVL 480
Query: 161 ITFKKPHIILLDEPSNHLDLDA---VEALIQGLVLFQGGILMVSHDEHLISGSVEELWVV 217
                  I L+DEPS +LD +       +I+  +L       +   + +++  + +  +V
Sbjct: 481 ALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIV 540
Query: 218 SEG 220
            EG
Sbjct: 541 FEG 543

>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 19/133 (14%)
Query: 58  IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHV----DG-----LDLS 108
           I ++GPNGIGK+T  +++ GE+    G+V  + + +I  +    +    DG     L+ +
Sbjct: 297 IGILGPNGIGKTTFARILVGEITADEGSV--TPEKQILSYKPQRIFPNYDGTVQQYLENA 354
Query: 109 SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 168
           S   L     F     ++L  H         L    +  LSGG+  ++  A    K+  +
Sbjct: 355 SKDALSTSSWFFEEVTKRLNLH--------RLLESNVNDLSGGELQKLYIAATLAKEADL 406
Query: 169 ILLDEPSNHLDLD 181
            +LD+PS++LD++
Sbjct: 407 YVLDQPSSYLDVE 419

>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 53/224 (23%)
Query: 28  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           I + ++ S   P G I      +G+        +G +G GKST+++ +    +P+ G+V 
Sbjct: 18  IQALNNVSLHVPAGQI------YGV--------IGASGAGKSTLIRCVNLLERPTEGSVL 63
Query: 88  --------------RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP----GVPEQKLRA 129
                           A+ +I +  QH     +L S+  ++     P      P+ +++ 
Sbjct: 64  VDGQELTTLSESELTKARRQIGMIFQH----FNLLSSRTVFGNVALPLELDNTPKDEVKR 119
Query: 130 HLGSFGVTGNLALQPM--------YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD 181
                 VT  L+L  +          LSGGQK RVA A+     P ++L DE ++ LD  
Sbjct: 120 R-----VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPA 174
Query: 182 AVEALIQGLVLFQG----GILMVSHDEHLISGSVEELWVVSEGK 221
              ++++ L          IL+++H+  ++    + + V+S G+
Sbjct: 175 TTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGE 218

>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 75/187 (40%), Gaps = 32/187 (17%)
Query: 60  MVGPNGIGKSTILKLIAGEL----------QPSSGTVFRSAKVRIAVFSQHHVDGLDLSS 109
           +VGPNG GKST+L   AG            QP          +  A  SQ         +
Sbjct: 31  LVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPF---A 87
Query: 110 NPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-----QPMYTLSGGQKSRVAFAKITFK 164
            P+ + +         K R  L +  V G LAL     +    LSGG+  RV  A +  +
Sbjct: 88  TPVWHYLTLHQ---HDKTRTELLN-DVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ 143
Query: 165 -------KPHIILLDEPSNHLDLDAVEALIQGL-VLFQGGILMV--SHDEHLISGSVEEL 214
                     ++LLDEP N LD+    AL + L  L Q G+ +V  SHD +         
Sbjct: 144 ITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGLAIVXSSHDLNHTLRHAHRA 203
Query: 215 WVVSEGK 221
           W++  GK
Sbjct: 204 WLLKGGK 210

>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 25/166 (15%)
Query: 29  ISFSDASFGYP-GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           I+  +A+F +    P     + F I   + +A+VG  G GKS++L  +  E+    G V 
Sbjct: 4   ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA 63
Query: 88  ---------RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKL-----RAHLGS 133
                    + A ++     ++ + G  L       +++    +P+ ++     R  +G 
Sbjct: 64  IKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGE 123
Query: 134 FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
            GV           LSGGQK RV+ A+  +    I L D+P + +D
Sbjct: 124 KGVN----------LSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 159

>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 75/187 (40%), Gaps = 32/187 (17%)
Query: 60  MVGPNGIGKSTILKLIAGEL----------QPSSGTVFRSAKVRIAVFSQHHVDGLDLSS 109
           +VGPNG GKST+L   AG            QP          +  A  SQ         +
Sbjct: 31  LVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPF---A 87
Query: 110 NPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-----QPMYTLSGGQKSRVAFAKITFK 164
            P+ + +         K R  L +  V G LAL     +    LSGG+  RV  A +  +
Sbjct: 88  TPVWHYLTLHQ---HDKTRTELLN-DVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ 143
Query: 165 -------KPHIILLDEPSNHLDLDAVEALIQGL-VLFQGGILMV--SHDEHLISGSVEEL 214
                     ++LLDEP N LD+    AL + L  L Q G+ +V  SHD +         
Sbjct: 144 ITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQGLAIVXSSHDLNHTLRHAHRA 203
Query: 215 WVVSEGK 221
           W++  GK
Sbjct: 204 WLLKGGK 210

>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 76/187 (40%), Gaps = 32/187 (17%)
Query: 60  MVGPNGIGKSTILKLIAGEL----------QPSSGTVFRSAKVRIAVFSQHHVDGLDLSS 109
           +VGPNG GKST+L  +AG            QP          +  A  SQ         +
Sbjct: 31  LVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPF---A 87
Query: 110 NPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-----QPMYTLSGGQKSRVAFAKITFK 164
            P+ + +         K R  L +  V G LAL     +    LSGG+  RV  A +  +
Sbjct: 88  TPVWHYLTLHQ---HDKTRTELLN-DVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ 143
Query: 165 -------KPHIILLDEPSNHLDLDAVEALIQGL-VLFQGG--ILMVSHDEHLISGSVEEL 214
                     ++LLD+P N LD+    AL + L  L Q G  I+M SHD +         
Sbjct: 144 ITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRA 203
Query: 215 WVVSEGK 221
           W++  GK
Sbjct: 204 WLLKGGK 210

>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/219 (21%), Positives = 93/219 (42%), Gaps = 43/219 (19%)
Query: 28  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           I + ++ S   P G I      +G+        +G +G GKST+++ +    +P+ G+V 
Sbjct: 41  IQALNNVSLHVPAGQI------YGV--------IGASGAGKSTLIRCVNLLERPTEGSVL 86
Query: 88  --------------RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP----GVPEQKLRA 129
                           A+ +I    QH     +L S+  ++     P      P+ +++ 
Sbjct: 87  VDGQELTTLSESELTKARRQIGXIFQH----FNLLSSRTVFGNVALPLELDNTPKDEVKR 142
Query: 130 HLGSF-GVTGNLALQPMY--TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 186
            +     + G       Y   LSGGQK RVA A+     P ++L D+ ++ LD     ++
Sbjct: 143 RVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSI 202
Query: 187 IQGLVLFQG----GILMVSHDEHLISGSVEELWVVSEGK 221
           ++ L          IL+++H+  ++    + + V+S G+
Sbjct: 203 LELLKDINRRLGLTILLITHEXDVVKRICDCVAVISNGE 241

>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 94/219 (42%), Gaps = 43/219 (19%)
Query: 28  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           I + ++ S   P G I      +G+        +G +G GKST+++ +    +P+ G+V 
Sbjct: 41  IQALNNVSLHVPAGQI------YGV--------IGASGAGKSTLIRCVNLLERPTEGSVL 86
Query: 88  --------------RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP----GVPEQKLR- 128
                           A+ +I +  QH     +L S+  ++     P      P+ +++ 
Sbjct: 87  VDGQELTTLSESELTKARRQIGMIFQH----FNLLSSRTVFGNVALPLELDNTPKDEVKR 142
Query: 129 --AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL 186
               L S    G+        LSGGQK RVA A+     P ++L D+ ++ LD     ++
Sbjct: 143 RVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSI 202
Query: 187 IQGLVLFQG----GILMVSHDEHLISGSVEELWVVSEGK 221
           ++ L          IL+++H+  ++    + + V+S G+
Sbjct: 203 LELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGE 241

>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 72/170 (42%), Gaps = 21/170 (12%)
Query: 29  ISFSDASFGYP-GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI------AGELQ- 80
           ++  D +  Y  GG  + +N++F I    R+ ++G  G GKST+L          GE+Q 
Sbjct: 20  MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQI 79
Query: 81  ----PSSGTVFRSAKV------RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH 130
                 S T+ +  K       ++ +FS      LD   N        +    E  LR+ 
Sbjct: 80  DGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLD--PNAAHSDQEIWKVADEVGLRSV 137
Query: 131 LGSF-GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
           +  F G    + +     LS G K  +  A+    K  I+LLDEPS HLD
Sbjct: 138 IEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLD 187

>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 22/166 (13%)
Query: 41  GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV--FRSAKVRIAVFS 98
           G  + K +++ I    +  + G NG GK+T+L ++      +SGTV  F     ++   +
Sbjct: 33  GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSA 92
Query: 99  QHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL------------------ 140
           +     +   S+ LL   +    V +  +     S GV  ++                  
Sbjct: 93  ETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXS 152
Query: 141 --ALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE 184
             A Q +  LS G+K RV  A+    +P +++LDEP+  LD  A E
Sbjct: 153 AKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARE 198

>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 35/165 (21%)
Query: 40  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQ 99
           G   + K ++F I+      ++GPNG GK+T L++I+  ++PSSG V         VF +
Sbjct: 26  GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV--------TVFGK 77
Query: 100 HHVDGLDLSSNPLLYM------MRCFPGVPEQKLRAHLGSFGVTGNLALQPMY------- 146
           + V+        + Y+       R   G+  + LR  +  F  + +  ++ M        
Sbjct: 78  NVVEEPHEVRKLISYLPEEAGAYRNMQGI--EYLR-FVAGFYASSSSEIEEMVERATEIA 134
Query: 147 -----------TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 180
                      T S G   ++  A+     P + +LDEP++ LD+
Sbjct: 135 GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDV 179

>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 87/197 (44%), Gaps = 33/197 (16%)
Query: 41  GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG--ELQPSSGTVFRSAKVRIAVF- 97
           G  + K +N  +      A++GPNG GKST+ K++AG  E     G +    +  + +  
Sbjct: 15  GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSP 74
Query: 98  SQHHVDGLDLSSNPLLYMMRCFPGVP-----EQKLRAHLG------SFGVTGNLALQPM- 145
            +    GL L+     Y +   PGV         L+A LG       F      AL+ + 
Sbjct: 75  DERARKGLFLAFQ---YPVEV-PGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLD 130
Query: 146 -----------YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQ 194
                         SGG+K R    ++   +P   +LDE  + LD+DA++ + +G+   +
Sbjct: 131 WDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMR 190
Query: 195 G---GILMVSHDEHLIS 208
           G   G L+++H + +++
Sbjct: 191 GPNFGALVITHYQRILN 207

>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 23/160 (14%)
Query: 44  LFKNLNFGIDLDSRIAMVGPNGIGKSTILK-------------LIAGELQPSSGTVFRSA 90
           + K +N  I     + ++GP+G GKST L+             +I G    +  T     
Sbjct: 39  VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 91  KVRIAVFSQH-----HVDGLD-LSSNPLLYMMRCFP-GVPEQKLRAHLGSFGVTGNLALQ 143
           +  + +  Q      H+  L+ ++  P+   +R +P    E K    L   G+       
Sbjct: 99  REEVGMVFQRFNLFPHMTVLNNITLAPM--KVRKWPREKAEAKAMELLDKVGLKDKAHAY 156
Query: 144 PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV 183
           P  +LSGGQ  RVA A+    +P I+L DEP++ LD + V
Sbjct: 157 P-DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMV 195

>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 23/160 (14%)
Query: 44  LFKNLNFGIDLDSRIAMVGPNGIGKSTILK-------------LIAGELQPSSGTVFRSA 90
           + K +N  I     + ++GP+G GKST L+             +I G    +  T     
Sbjct: 18  VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 91  KVRIAVFSQH-----HVDGLD-LSSNPLLYMMRCFP-GVPEQKLRAHLGSFGVTGNLALQ 143
           +  + +  Q      H+  L+ ++  P+   +R +P    E K    L   G+       
Sbjct: 78  REEVGMVFQRFNLFPHMTVLNNITLAPM--KVRKWPREKAEAKAMELLDKVGLKDKAHAY 135
Query: 144 PMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV 183
           P  +LSGGQ  RVA A+    +P I+L DEP++ LD + V
Sbjct: 136 P-DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMV 174

>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 75/187 (40%), Gaps = 32/187 (17%)
Query: 60  MVGPNGIGKSTILKLIAGEL----------QPSSGTVFRSAKVRIAVFSQHHVDGLDLSS 109
           +VGPNG GKST+L  +AG            QP          +  A  SQ         +
Sbjct: 31  LVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPF---A 87
Query: 110 NPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL-----QPMYTLSGGQKSRVAFAKITFK 164
            P+ + +         K R  L +  V G LAL     +    LSGG+  RV  A +  +
Sbjct: 88  TPVWHYLTLH---QHDKTRTELLN-DVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ 143
Query: 165 -------KPHIILLDEPSNHLDLDAVEALIQGL-VLFQGG--ILMVSHDEHLISGSVEEL 214
                     ++LLD+P   LD+    AL + L  L Q G  I+M SHD +         
Sbjct: 144 ITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRA 203
Query: 215 WVVSEGK 221
           W++  GK
Sbjct: 204 WLLKGGK 210

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	239
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	2e-44
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	4e-41
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	3e-30
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	5e-33
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	5e-32
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	5e-27
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	8e-27
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	1e-26
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	6e-25
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	6e-18
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	7e-25
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	1e-23
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	1e-19
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	4e-22
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	6e-22
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	5e-15
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	5e-21
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	3e-18
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	2e-17
1sgw_A	214	Putative ABC transporter; structural genomics, P p	3e-17
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	1e-15
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	2e-14
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	2e-15
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	7e-15
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	2e-13
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	3e-13
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	5e-13
1g6h_A	257	High-affinity branched-chain amino acid transport	1e-12
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	3e-11
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	4e-10
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	5e-07
1ji0_A	240	ABC transporter; ATP binding protein, structural g	5e-10
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	8e-10
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	5e-05
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	9e-10
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	1e-09
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	1e-09
2ghi_A	260	Transport protein; multidrug resistance protein, M	3e-09
2ghi_A	260	Transport protein; multidrug resistance protein, M	6e-07
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	4e-09
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	4e-09
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	8e-05
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	6e-09
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	1e-08
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	2e-08
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	2e-05
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	3e-08
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	3e-05
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	3e-08
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	5e-05
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	4e-08
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	5e-08
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	1e-07
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	1e-04
1b0u_A	262	Histidine permease; ABC transporter, transport pro	2e-07
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	4e-07
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	6e-06
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	2e-05
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	3e-05
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	8e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	2e-04
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	5e-04
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	3e-04
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	3e-04
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	4e-04
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	7e-04

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score =  158 bits (400), Expect = 2e-44
 Identities = 38/141 (26%), Positives = 70/141 (49%), Gaps = 1/141 (0%)

Query: 88  RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ-PMY 146
            +A +      + H   +             F  +  +++  H    G+   +     + 
Sbjct: 841 DNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIR 900

Query: 147 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHL 206
            LSGGQK ++  A  T+++PH+I+LDEP+N+LD D++ AL + L  F+GG+++++H    
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEF 960

Query: 207 ISGSVEELWVVSEGKATPFHG 227
                EE+W V +G+ TP   
Sbjct: 961 TKNLTEEVWAVKDGRMTPSGH 981

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score =  148 bits (375), Expect = 4e-41
 Identities = 57/230 (24%), Positives = 95/230 (41%), Gaps = 6/230 (2%)

Query: 10  DPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKS 69
             +        D+      +   + S  Y G  IL       +    R  + GPNG GKS
Sbjct: 417 VDNIPVGPNFDDEEDEGEDLCNCEFSLAY-GAKILLNKTQLRLKRARRYGICGPNGCGKS 475

Query: 70  TILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA 129
           T+++ IA        T     + R  V+ +H +DG    ++ L ++        ++ ++ 
Sbjct: 476 TLMRAIANGQVDGFPT---QEECRT-VYVEHDIDGTHSDTSVLDFVFES-GVGTKEAIKD 530

Query: 130 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQG 189
            L  FG T  +   P+  LSGG K ++A A+   +   I+LLDEP+NHLD   V  L+  
Sbjct: 531 KLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNY 590

Query: 190 LVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQSR 239
           L       + +SHD   +    E +      K   + G F ++ K   + 
Sbjct: 591 LNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAA 640

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score =  117 bits (293), Expect = 3e-30
 Identities = 44/188 (23%), Positives = 74/188 (39%), Gaps = 9/188 (4%)

Query: 12  DYKFEFPTPDDRPG-----PPIISFSDASFGYPGGP-ILFKNLNFGIDLDSRIAMVGPNG 65
           D +F+FP P    G       I+  ++  F YPG       ++NF   L SRIA++GPNG
Sbjct: 650 DLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNG 709

Query: 66  IGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSN--PLLYMMRCFPGVP 123
            GKST++ ++ GEL P+SG V+     RIA   QH    ++   +  P  Y+   F    
Sbjct: 710 AGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGE 769

Query: 124 EQKLRAH-LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA 182
           +++               A+  ++ + G  +           K             ++  
Sbjct: 770 DRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGM 829

Query: 183 VEALIQGL 190
                  +
Sbjct: 830 KSERWVPM 837

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score =  120 bits (302), Expect = 5e-33
 Identities = 50/227 (22%), Positives = 90/227 (39%), Gaps = 30/227 (13%)

Query: 23  RPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS 82
           R    +I          G  IL K +++ I    +  + G NG GK+T+L ++      +
Sbjct: 16  RGSHMLIQLDQIGRMKQGKTIL-KKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT 74

Query: 83  SGTVF-------------RSAKVRIAVFSQHHVDGLDLSSNPL------LYMMRCFPGVP 123
           SGTV               + +  I   S   ++        +       +         
Sbjct: 75  SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDI 134

Query: 124 --EQKLRAH--LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
             E +  AH  L   G+    A Q +  LS G+K RV  A+    +P +++LDEP+  LD
Sbjct: 135 DDEIRNEAHQLLKLVGM-SAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLD 193

Query: 180 LDAVEALIQGL-VLFQGG----ILMVSHDEHLISGSVEELWVVSEGK 221
             A E+L+  L  L        ++ V+H    I+ +  ++ ++ +G+
Sbjct: 194 FIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQ 240

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score =  116 bits (293), Expect = 5e-32
 Identities = 51/198 (25%), Positives = 83/198 (41%), Gaps = 33/198 (16%)

Query: 27  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86
             +S  +  F Y     LF+ LNF ++    +A++G NG GKST+L L+ G  +P  G +
Sbjct: 3   KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62

Query: 87  FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV---------- 136
               +  I    Q        S   ++ M R            H+ +F            
Sbjct: 63  -EVYQ-SIGFVPQFFSSPFAYSVLDIVLMGR----------STHINTFAKPKSHDYQVAM 110

Query: 137 -------TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL---DAVEAL 186
                    +LA +   +LSGGQ+  +  A+    +  +ILLDEP++ LDL   D V +L
Sbjct: 111 QALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSL 170

Query: 187 IQGLVLFQG-GILMVSHD 203
           +  L   Q   ++  +H 
Sbjct: 171 LIDLAQSQNMTVVFTTHQ 188

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score =  103 bits (260), Expect = 5e-27
 Identities = 56/253 (22%), Positives = 102/253 (40%), Gaps = 56/253 (22%)

Query: 27  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86
            I+   + ++ Y  G    K +N  I      A++G NG+GKST+ +   G L+PSSG +
Sbjct: 6   YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65

Query: 87  FRSAKVRIAVFSQHHVDGLDLSSNPL-LYMMR-----------------------CF-P- 120
                           D   +  +   +  +R                        F   
Sbjct: 66  L--------------FDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAV 111

Query: 121 --GVPEQKLRAH----LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP 174
              +PE ++R      L   G+   L  +P + LS GQK RVA A +   +P +++LDEP
Sbjct: 112 NMKLPEDEIRKRVDNALKRTGIEH-LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEP 170

Query: 175 SNHLD---LDAVEALIQGLVLFQG-GILMVSHDEHLISGSVEELWVVSEGKATPFHGT-- 228
           +  LD   +  +  L+  +    G  I++ +HD  ++    + ++V+ EG+     G   
Sbjct: 171 TAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVI-LQGNPK 229

Query: 229 --FHDYKKMLQSR 239
             F + + + +  
Sbjct: 230 EVFAEKEVIRKVN 242

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score =  107 bits (268), Expect = 8e-27
 Identities = 59/238 (24%), Positives = 90/238 (37%), Gaps = 26/238 (10%)

Query: 16  EFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI 75
           +     D     ++ +      Y  G    +     I     I +VGPNGIGK+T +K++
Sbjct: 345 KLSERVDVERETLVEYPRLVKDY--GSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKML 402

Query: 76  AGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNP------LLYMMRCFPGVPEQKLRA 129
           AG  +P+ G V     V    +   +     + +        LL  +             
Sbjct: 403 AGVEEPTEGKVEWDLTV---AYKPQY-----IKAEYEGTVYELLSKIDSSKLNSNFYKTE 454

Query: 130 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD---AVEAL 186
            L   G+           LSGG+  RVA A    +   I LLDEPS +LD++   AV   
Sbjct: 455 LLKPLGIIDLYDRNVE-DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRA 513

Query: 187 IQGLVL-FQGGILMVSHDEHLISGSVEELWV-----VSEGKATPFHGTFHDYKKMLQS 238
           I+ L+   +   L+V HD  +I    + L V        G+A P  G      + L S
Sbjct: 514 IRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREGMNRFLAS 571

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score =  106 bits (267), Expect = 1e-26
 Identities = 45/194 (23%), Positives = 76/194 (39%), Gaps = 25/194 (12%)

Query: 33  DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV 92
           D    Y G           +     + +VGPNG GK+T +K++AG+L P+      S   
Sbjct: 96  DCVHRY-GVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDN 154

Query: 93  RIAVFSQH-------HVDGLDLSSNPLLYM----MRCFPGVPEQKLRAH---------LG 132
            I  F  +        +   ++             +   G   + L+           + 
Sbjct: 155 VIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVK 214

Query: 133 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VEALIQG 189
              +  N+  + ++ LSGG+  RVA A    +K H    DEPS++LD+     V  +I+ 
Sbjct: 215 ELELE-NVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR 273

Query: 190 LVLFQGGILMVSHD 203
           L      +L+V HD
Sbjct: 274 LANEGKAVLVVEHD 287

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score =  101 bits (254), Expect = 6e-25
 Identities = 47/199 (23%), Positives = 73/199 (36%), Gaps = 17/199 (8%)

Query: 18  PTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG 77
            T D +      +FS  S     G  +             + M+G NG GK+T++KL+AG
Sbjct: 341 ATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAG 400

Query: 78  ELQPSSGTVFRSAKV-----RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG 132
            L+P  G       V     +IA      V    L    +            Q     + 
Sbjct: 401 ALKPDEGQDIPKLNVSMKPQKIAPKFPGTV--RQLFFKKIRGQFL-----NPQFQTDVVK 453

Query: 133 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD---AVEALIQG 189
              +  ++  Q +  LSGG+  RVA          I L+DEPS +LD +       +I+ 
Sbjct: 454 PLRID-DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRR 512

Query: 190 LVLFQG-GILMVSHDEHLI 207
            +L       +V HD  + 
Sbjct: 513 FILHNKKTAFIVEHDFIMA 531

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 81.2 bits (201), Expect = 6e-18
 Identities = 40/210 (19%), Positives = 76/210 (36%), Gaps = 38/210 (18%)

Query: 27  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86
           P    +  +  Y        +          + +VG NGIGKST LK++AG+ +P+ G  
Sbjct: 76  PTNLEAHVTHRYSANSFK-LHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134

Query: 87  FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPG----------VPEQ---KLRAHLGS 133
               + +  +    +  G +L  N    M+               +P      ++     
Sbjct: 135 DDPPEWQEII---KYFRGSELQ-NYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGEL 190

Query: 134 FGVTG-----------------NLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 176
             +                   N+  + +  LSGG+  R A      ++  + + DEPS+
Sbjct: 191 LKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSS 250

Query: 177 HLDLDA---VEALIQGLVLFQGGILMVSHD 203
           +LD+        +I+ L+     ++ V HD
Sbjct: 251 YLDVKQRLNAAQIIRSLLAPTKYVICVEHD 280

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 97.6 bits (244), Expect = 7e-25
 Identities = 43/185 (23%), Positives = 70/185 (37%), Gaps = 24/185 (12%)

Query: 40  GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV---------FRSA 90
                   L+  +     + +VGPNG GKST+L  +AG +    G++         + + 
Sbjct: 11  AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSAT 69

Query: 91  KV--RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTL 148
           K+    A  SQ             L + +       + L    G+  +      +    L
Sbjct: 70  KLALHRAYLSQQQTPPFATPVWHYLTLHQ-HDKTRTELLNDVAGALALDD-KLGRSTNQL 127

Query: 149 SGGQKSRVAFA-------KITFKKPHIILLDEPSNHLDLD---AVEALIQGLVLFQGGIL 198
           SGG+  RV  A               ++LLDEP N LD+    A++ ++  L      I+
Sbjct: 128 SGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIV 187

Query: 199 MVSHD 203
           M SHD
Sbjct: 188 MSSHD 192

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 97.8 bits (244), Expect = 1e-23
 Identities = 36/206 (17%), Positives = 72/206 (34%), Gaps = 11/206 (5%)

Query: 11  PDYKFEFPTPDDRP----GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGI 66
              + +F   +                       G       N        I ++GPNGI
Sbjct: 246 RPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGI 305

Query: 67  GKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYM-MRCFPGVPEQ 125
           GK+T  +++ GE+    G+V    ++ ++   Q      D +    L    +        
Sbjct: 306 GKTTFARILVGEITADEGSVTPEKQI-LSYKPQRIFPNYDGTVQQYLENASKDALSTSSW 364

Query: 126 KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD---A 182
                     +   L    +  LSGG+  ++  A    K+  + +LD+PS++LD++    
Sbjct: 365 FFEEVTKRLNLH-RLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYI 423

Query: 183 VEALIQGLVL-FQGGILMVSHDEHLI 207
           V   I+ +    +    ++ HD  + 
Sbjct: 424 VAKAIKRVTRERKAVTFIIDHDLSIH 449

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 85.8 bits (213), Expect = 1e-19
 Identities = 41/206 (19%), Positives = 79/206 (38%), Gaps = 46/206 (22%)

Query: 32  SDASFGYPGGPILFKNLNFGIDLD-SRIAMVGPNGIGKSTILKLIAGELQPSSGTV---- 86
            +    Y      FK        + + + ++G NG+GK+T+LK++AGE+ P+ G      
Sbjct: 3   GEVIHRY--KVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKV 60

Query: 87  --------FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFG--- 135
                   FR     I  + +      +L SN L  + +      E   +   G+     
Sbjct: 61  GKDEVLKRFRGK--EIYNYFK------ELYSNELKIVHK--IQYVEYASKFLKGTVNEIL 110

Query: 136 -----------VTGNLALQPMY-----TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
                      V   L +  ++      LSGG   R+  A    ++  + + D+PS++LD
Sbjct: 111 TKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLD 170

Query: 180 LDAVEALIQGLVLFQGG--ILMVSHD 203
           +     + + +        +++V HD
Sbjct: 171 VRERMNMAKAIRELLKNKYVIVVDHD 196

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 90.9 bits (226), Expect = 4e-22
 Identities = 39/200 (19%), Positives = 79/200 (39%), Gaps = 40/200 (20%)

Query: 28  IISFSDASFGYPGGPILF---KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 84
           +I   +      G        +N+N  ++   ++ ++GPNG GK+T+L+ I+G L P SG
Sbjct: 1   MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISG-LLPYSG 58

Query: 85  TVFRSAKVRIAVFSQHHVDGLDLSS----------NPLLYMMR-------CFP----GVP 123
            +F              ++G+++             P  Y +               G+ 
Sbjct: 59  NIF--------------INGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLD 104

Query: 124 EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAV 183
                  L +  +   +  + +Y LS GQ   V  +     +P I+ LDEP  ++D    
Sbjct: 105 RDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARR 164

Query: 184 EALIQGLVLFQGGILMVSHD 203
             + + +  +    ++V+H+
Sbjct: 165 HVISRYIKEYGKEGILVTHE 184

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 92.7 bits (231), Expect = 6e-22
 Identities = 55/211 (26%), Positives = 83/211 (39%), Gaps = 22/211 (10%)

Query: 5   DEVVNDPDYKFEFPTPDDRP---GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMV 61
           DE V    Y+ +F    +R       ++++      Y  G    +     I     I +V
Sbjct: 261 DENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDY--GSFRLEVEPGEIKKGEVIGIV 318

Query: 62  GPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----RIAVFSQHHVDGLDLSSNPLLYMM 116
           GPNGIGK+T +K++AG  +P+ G +     V      I    +  V  L    +      
Sbjct: 319 GPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLN- 377

Query: 117 RCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 176
                         L   G+      +    LSGG+  RVA A    +   I LLDEPS 
Sbjct: 378 ------SNFYKTELLKPLGIIDLYDREVN-ELSGGELQRVAIAATLLRDADIYLLDEPSA 430

Query: 177 HLDLD---AVEALIQGLVLFQG-GILMVSHD 203
           +LD++   AV   I+ L+       L+V HD
Sbjct: 431 YLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 461

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 72.7 bits (179), Expect = 5e-15
 Identities = 48/210 (22%), Positives = 73/210 (34%), Gaps = 41/210 (19%)

Query: 27  PIISFS----DASFGYPGGPILFK-NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP 81
           P         D    Y  G   F       +     + +VGPNG GKST +K++AG+L P
Sbjct: 16  PRSHMEQLEEDCVHRY--GVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIP 73

Query: 82  SSGTVFRSAKVRIAVFSQHHVDGLDL---------------------SSNPLLYMMRCFP 120
           +      S    I  F      G +L                        P     +   
Sbjct: 74  NLCGDNDSWDGVIRAF-----RGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIE 128

Query: 121 GVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 176
            +       KL   + +  +  N+  + +  LSGG+  RVA A    +       DEPS+
Sbjct: 129 LLKKADETGKLEEVVKALELE-NVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSS 187

Query: 177 HLDLDA---VEALIQGLVLFQGGILMVSHD 203
           +LD+         I+ L      +L+V HD
Sbjct: 188 YLDIRQRLNAARAIRRLSEEGKSVLVVEHD 217

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 87.6 bits (218), Expect = 5e-21
 Identities = 49/231 (21%), Positives = 90/231 (38%), Gaps = 56/231 (24%)

Query: 29  ISFSDASFGYPGGPIL----FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 84
           I   + S  +  G  L     +N++  I+    + + G  G GKST+L+++AG ++P+SG
Sbjct: 3   IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62

Query: 85  TVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR-----------------------CF-P 120
            V                DG         Y +R                        F  
Sbjct: 63  DVL--------------YDGERKK----GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAV 104

Query: 121 ---GVPE---QKLRAHLGSFGVTG-NLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE 173
                       ++  +   G+   +   +  + LSGG+K RVA A +   +P I++LDE
Sbjct: 105 KNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDE 164

Query: 174 PSNHLD---LDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGK 221
           P   LD      +  +++        ++++SHD   +   V+ + V+ +GK
Sbjct: 165 PLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGK 215

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score = 79.8 bits (198), Expect = 3e-18
 Identities = 41/206 (19%), Positives = 79/206 (38%), Gaps = 72/206 (34%)

Query: 28  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           ++S     F Y     + ++++F    +S IA  GP+G GKSTI  L+    QP++G + 
Sbjct: 1   MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60

Query: 88  RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG--------------- 132
                         +DG  + +            +  +  R+ +G               
Sbjct: 61  --------------IDGQPIDN------------ISLENWRSQIGFVSQDSAIMAGTIRE 94

Query: 133 --SFGVTGN-------------------LALQPMY---------TLSGGQKSRVAFAKIT 162
             ++G+ G+                     +              +SGGQ+ R+A A+  
Sbjct: 95  NLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAF 154

Query: 163 FKKPHIILLDEPSNHLDLDAVEALIQ 188
            + P I++LDE +  LD ++ E+++Q
Sbjct: 155 LRNPKILMLDEATASLDSES-ESMVQ 179

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score = 77.9 bits (193), Expect = 2e-17
 Identities = 49/205 (23%), Positives = 75/205 (36%), Gaps = 72/205 (35%)

Query: 29  ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           I+F +  F Y P  P++  N+N  I     I +VG +G GKST+ KLI     P +G V 
Sbjct: 8   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67

Query: 88  RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGS-------FGVT--G 138
                         +DG DL+                  LR  +G           +   
Sbjct: 68  --------------IDGHDLAL------------ADPNWLRRQVGVVLQDNVLLNRSIID 101

Query: 139 NLAL-QPMYT----------------------------------LSGGQKSRVAFAKITF 163
           N++L  P  +                                  LSGGQ+ R+A A+   
Sbjct: 102 NISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALV 161

Query: 164 KKPHIILLDEPSNHLDLDAVEALIQ 188
             P I++ DE ++ LD ++ E +I 
Sbjct: 162 NNPKILIFDEATSALDYES-EHVIM 185

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 76.4 bits (189), Expect = 3e-17
 Identities = 36/142 (25%), Positives = 56/142 (39%), Gaps = 10/142 (7%)

Query: 46  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF------RSAKVRIAVFSQ 99
           + +   I+  + +   GPNGIGK+T+LK I+  L+P  G +          K +I    +
Sbjct: 26  ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE 85

Query: 100 HHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH--LGSFGVTGNLALQPMYTLSGGQKSRVA 157
             +    +S    L  +    GV   K      L S  V      + +  LS G   RV 
Sbjct: 86  EIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD--LKKKLGELSQGTIRRVQ 143

Query: 158 FAKITFKKPHIILLDEPSNHLD 179
            A        I +LD+P   +D
Sbjct: 144 LASTLLVNAEIYVLDDPVVAID 165

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 75.1 bits (185), Expect = 1e-15
 Identities = 48/206 (23%), Positives = 82/206 (39%), Gaps = 71/206 (34%)

Query: 29   ISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86
            + FS   F YP  P   + + L+  +     +A+VG +G GKST+++L+     P +G+V
Sbjct: 1031 VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV 1090

Query: 87   FRSAKVRIAVFSQHHVDGLDLSS---------------NPLLYMM---------RCFPGV 122
            F              +DG ++                  P+L+                V
Sbjct: 1091 F--------------LDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVV 1136

Query: 123  PEQKLR-------AH-------------LGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT 162
              +++         H             +G  G            LSGGQK R+A A+  
Sbjct: 1137 SYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQ----------LSGGQKQRIAIARAL 1186

Query: 163  FKKPHIILLDEPSNHLDLDAVEALIQ 188
             ++PHI+LLDE ++ LD ++ E ++Q
Sbjct: 1187 VRQPHILLLDEATSALDTES-EKVVQ 1211

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 71.2 bits (175), Expect = 2e-14
 Identities = 48/204 (23%), Positives = 77/204 (37%), Gaps = 69/204 (33%)

Query: 29  ISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86
           + F +  F YP      + K LN  +     +A+VG +G GKST ++L+     P  G V
Sbjct: 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447

Query: 87  FRSAKVRIAVFSQHHVDGLDLSS---------------NPLLYMMRCF-------PGVPE 124
                          +DG D+ +                P+L+              V  
Sbjct: 448 S--------------IDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTM 493

Query: 125 QKLR-------AH-------------LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK 164
            ++        A+             +G  G            LSGGQK R+A A+   +
Sbjct: 494 DEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQ----------LSGGQKQRIAIARALVR 543

Query: 165 KPHIILLDEPSNHLDLDAVEALIQ 188
            P I+LLDE ++ LD ++ EA++Q
Sbjct: 544 NPKILLLDEATSALDTES-EAVVQ 566

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score = 72.1 bits (178), Expect = 2e-15
 Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 36/208 (17%)

Query: 27  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL-QPSSGT 85
            I+   +      G  IL K ++  +     ++++G +G GKST+L ++ G L  P+ G 
Sbjct: 3   EILRAENIKKVIRGYEIL-KGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPTEGK 60

Query: 86  VF------------RSAKVR---IA-VFSQHH-VDGLDLSSN---PLLYMMRCFPGVP-- 123
           VF              + +R   +  VF  H+ +  L    N   P+L M     G P  
Sbjct: 61  VFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM-----GKPKK 115

Query: 124 EQKLRAH--LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL- 180
           E K R    L   G+   L+ +P   LSGG++ RVA A+    +P ++  DEP+ +LD  
Sbjct: 116 EAKERGEYLLSELGLGDKLSRKPY-ELSGGEQQRVAIARALANEPILLFADEPTGNLDSA 174

Query: 181 --DAVEALIQGLVLFQGGILMVSHDEHL 206
               V  +   +      I+MV+H+  L
Sbjct: 175 NTKRVMDIFLKINEGGTSIVMVTHEREL 202

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score = 71.0 bits (175), Expect = 7e-15
 Identities = 46/207 (22%), Positives = 72/207 (34%), Gaps = 74/207 (35%)

Query: 29  ISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86
           + F D SF YP  P   + + L F +      A+VGPNG GKST+  L+    QP+ G V
Sbjct: 17  VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76

Query: 87  FRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG-------------- 132
                          +DG  L      Y            L   +               
Sbjct: 77  L--------------LDGEPLVQYDHHY------------LHTQVAAVGQEPLLFGRSFR 110

Query: 133 ---SFGVTGNLALQPMY----------------------------TLSGGQKSRVAFAKI 161
              ++G+T    ++ +                              LSGGQ+  VA A+ 
Sbjct: 111 ENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARA 170

Query: 162 TFKKPHIILLDEPSNHLDLDAVEALIQ 188
             +KP +++LD  ++ LD    +  +Q
Sbjct: 171 LIRKPRLLILDNATSALDAGN-QLRVQ 196

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score = 66.8 bits (164), Expect = 2e-13
 Identities = 32/149 (21%), Positives = 60/149 (40%), Gaps = 17/149 (11%)

Query: 46  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF----------RSAKVRIA 95
           K ++F I+      ++GPNG GK+T L++I+  ++PSSG V              +  I+
Sbjct: 32  KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLIS 91

Query: 96  VFSQH-HVDGLDLSSNPLLYMMRCFPGVPEQKLRAH----LGSFGVTGNLALQPMYTLSG 150
              +       ++     L  +  F      ++           G+        + T S 
Sbjct: 92  YLPEEAGAYR-NMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEK-IKDRVSTYSK 149

Query: 151 GQKSRVAFAKITFKKPHIILLDEPSNHLD 179
           G   ++  A+     P + +LDEP++ LD
Sbjct: 150 GMVRKLLIARALMVNPRLAILDEPTSGLD 178

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score = 66.0 bits (162), Expect = 3e-13
 Identities = 56/212 (26%), Positives = 99/212 (46%), Gaps = 37/212 (17%)

Query: 28  IISFSDASFGYPGGPILFKNLNFGIDLDSR----IAMVGPNGIGKSTILKLIAGEL-QPS 82
           ++   + +  Y  G  +   L   ++L+ +    ++++GP+G GKST+L +I G L +P+
Sbjct: 1   MVKLKNVTKTYKMGEEIIYALK-NVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPT 58

Query: 83  SGTVF------------RSAKVR---IA-VFSQHH-VDGLDLSSN---PLLYMMRCFPGV 122
            G V+               K+R   I  VF Q + +  L    N   PL++  +    +
Sbjct: 59  EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIF--KYRGAM 116

Query: 123 P--EQKLRAH--LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 178
              E++ RA   L    +    A      LSGGQ+ RVA A+     P IIL D+P+  L
Sbjct: 117 SGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWAL 176

Query: 179 DL---DAVEALIQGLVLFQGG-ILMVSHDEHL 206
           D    + +  L++ L    G  +++V+HD ++
Sbjct: 177 DSKTGEKIMQLLKKLNEEDGKTVVVVTHDINV 208

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 64.5 bits (158), Expect = 1e-12
 Identities = 38/211 (18%), Positives = 75/211 (35%), Gaps = 41/211 (19%)

Query: 47  NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF---------RSAKV----- 92
            ++  ++      ++GPNG GKST++ +I G L+   G V+           A++     
Sbjct: 25  GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84

Query: 93  -R----IAVFSQ----------HHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH----LGS 133
            R         +              G     +PL  +        E+++       L  
Sbjct: 85  VRTFQTPQPLKEMTVLENLLIGEICPG----ESPLNSLFYKKWIPKEEEMVEKAFKILEF 140

Query: 134 FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS---NHLDLDAVEALIQGL 190
             +  +L  +    LSGGQ   V   +     P +I++DEP           +   +  L
Sbjct: 141 LKL-SHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL 199

Query: 191 VLFQGGILMVSHDEHLISGSVEELWVVSEGK 221
                  L++ H   ++   ++ L+V+  G+
Sbjct: 200 KAKGITFLIIEHRLDIVLNYIDHLYVMFNGQ 230

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 60.3 bits (147), Expect = 3e-11
 Identities = 50/197 (25%), Positives = 79/197 (40%), Gaps = 59/197 (29%)

Query: 45  FKNLNFGIDLDSR---IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHH 101
             N    +D +       ++GP G GKS  L+LIAG ++P  G V               
Sbjct: 11  LGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVR-------------- 56

Query: 102 VDGLDLSSNP--------------LLYMMRCFP-------------GVP----EQKLRAH 130
           ++G D++  P              L      FP              V     ++++R  
Sbjct: 57  LNGADITPLPPERRGIGFVPQDYAL------FPHLSVYRNIAYGLRNVERVERDRRVREM 110

Query: 131 LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL 190
               G+   L  +P   LSGG++ RVA A+    +P ++LLDEP + +DL     L++ L
Sbjct: 111 AEKLGIAHLLDRKP-ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEEL 169

Query: 191 VLFQG--GI--LMVSHD 203
              Q    +  L V+HD
Sbjct: 170 RFVQREFDVPILHVTHD 186

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score = 57.6 bits (140), Expect = 4e-10
 Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 35/123 (28%)

Query: 18  PTPDDRPG-PPI------ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKS 69
               D PG  P+      I F +  F Y  G   L ++++F +     +A+VGP+G GKS
Sbjct: 36  TEVKDLPGAGPLRFQKGRIEFENVHFSYADGRETL-QDVSFTVMPGQTLALVGPSGAGKS 94

Query: 70  TILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA 129
           TIL+L+      SSG +               +DG D+S             V +  LR+
Sbjct: 95  TILRLLFRFYDISSGCIR--------------IDGQDISQ------------VTQASLRS 128

Query: 130 HLG 132
           H+G
Sbjct: 129 HIG 131

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score = 48.8 bits (117), Expect = 5e-07
 Identities = 22/41 (53%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 148 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 188
           LSGG+K RVA A+   K P IILLDE ++ LD    E  IQ
Sbjct: 191 LSGGEKQRVAIARTILKAPGIILLDEATSALDTSN-ERAIQ 230

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 56.7 bits (138), Expect = 5e-10
 Identities = 36/184 (19%), Positives = 70/184 (38%), Gaps = 52/184 (28%)

Query: 25  GPPIISFSDASFGYPGGPIL-FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS 83
              ++        Y  G I   K ++  +     + ++G NG GK+T L  IAG ++   
Sbjct: 3   SDIVLEVQSLHVYY--GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQK 60

Query: 84  GTVFRSAKVRIAVFSQHHVDGLDLSSNP--------LLYMM---RCFPG--VPEQKLRAH 130
           G +                +G D+++ P        +  +    R FP   V  + L   
Sbjct: 61  GKI--------------IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTV-YENLM-- 103

Query: 131 LGSFGVTGNLA----LQPMY---------------TLSGGQKSRVAFAKITFKKPHIILL 171
           +G++           L+ ++               TLSGG++  +A  +    +P ++++
Sbjct: 104 MGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMM 163

Query: 172 DEPS 175
           DEPS
Sbjct: 164 DEPS 167

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290

 Score = 56.6 bits (137), Expect = 8e-10
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 10  DPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKS 69
               K          G   +SFS+ S      P+L K++NF I+    +A+ G  G GK+
Sbjct: 22  FEKAKQNNNNRKTSNGDDSLSFSNFSLLGT--PVL-KDINFKIERGQLLAVAGSTGAGKT 78

Query: 70  TILKLIAGELQPSSGTVFRSAKVRIAVFSQ 99
           ++L +I GEL+PS G +  S   RI+  SQ
Sbjct: 79  SLLMMIMGELEPSEGKIKHSG--RISFCSQ 106

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 17/94 (18%)

Query: 147 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQ---GGIL----- 198
           TLSGGQ++R++ A+  +K   + LLD P        ++ L     +F+     ++     
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSP-----FGYLDVLT-EKEIFESCVCKLMANKTR 212

Query: 199 -MVSHDEHLISGSVEELWVVSEGKATPFHGTFHD 231
            +V+     +    +++ ++ EG +  F+GTF +
Sbjct: 213 ILVTSKMEHLK-KADKILILHEGSSY-FYGTFSE 244

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339

 Score = 56.6 bits (136), Expect = 9e-10
 Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 9/87 (10%)

Query: 130 HLGSFGVTGNLALQPMYTLSGGQKSRVAFA------KITFKKPHIILLDEPSNHLDLDAV 183
           +     V      +P+  LSGG++  +  A           +  +++LDEP+ +LD +  
Sbjct: 231 NKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERR 290

Query: 184 EALIQGL-VLFQGG--ILMVSHDEHLI 207
             LI  +    +    +++VSHDE L 
Sbjct: 291 RKLITIMERYLKKIPQVILVSHDEELK 317

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 47/214 (21%), Positives = 73/214 (34%), Gaps = 52/214 (24%)

Query: 7   VVNDPDYKFEFPTPDDRPGPPIISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNG 65
           ++ +   K      D  P    ++  D +  Y  GG  + +N++F I    R+ ++G  G
Sbjct: 2   LIENSHVK---K-DDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTG 57

Query: 66  IGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR-------- 117
            GKST+L      L  + G +               +DG+   S  L    +        
Sbjct: 58  SGKSTLLSAFLR-LLNTEGEIQ--------------IDGVSWDSITLEQWRKAFGVIPQK 102

Query: 118 --CFPGVPEQKL----------------RAHLGSFGVTGNLALQPMYT-----LSGGQKS 154
              F G   + L                   L S        L  +       LS G K 
Sbjct: 103 VFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQ 162

Query: 155 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 188
            +  A+    K  I+LLDEPS HLD      +I+
Sbjct: 163 LMCLARSVLSKAKILLLDEPSAHLDP-VTYQIIR 195

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 44/203 (21%), Positives = 67/203 (33%), Gaps = 66/203 (32%)

Query: 18  PTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG 77
             P       +I        +    +L K +N  I     + ++GP+G GKST L+ +  
Sbjct: 14  LVPRGSHMLQMIDVHQLKKSFGSLEVL-KGINVHIREGEVVVVIGPSGSGKSTFLRCLNL 72

Query: 78  ELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG----S 133
                 G +               +DG++L +                K+R  +G     
Sbjct: 73  LEDFDEGEII--------------IDGINLKA----------KDTNLNKVREEVGMVFQR 108

Query: 134 FG------VTGNLALQPMYT-------------------------------LSGGQKSRV 156
           F       V  N+ L PM                                 LSGGQ  RV
Sbjct: 109 FNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRV 168

Query: 157 AFAKITFKKPHIILLDEPSNHLD 179
           A A+    +P I+L DEP++ LD
Sbjct: 169 AIARALAMEPKIMLFDEPTSALD 191

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score = 54.9 bits (133), Expect = 3e-09
 Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 29 ISFSDASFGY---PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI 75
          I FSD +F Y        L K++NF I   +  A+VG  G GKSTI KL+
Sbjct: 18 IEFSDVNFSYPKQTNHRTL-KSINFFIPSGTTCALVGHTGSGKSTIAKLL 66

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score = 47.9 bits (115), Expect = 6e-07
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 148 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 188
           LSGG++ R+A A+   K P I++ DE ++ LD    E L Q
Sbjct: 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT-EYLFQ 195

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score = 54.9 bits (133), Expect = 4e-09
 Identities = 42/166 (25%), Positives = 62/166 (37%), Gaps = 53/166 (31%)

Query: 46  KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL 105
            NL+  ++      ++GP G GK+  L+LIAG   P SG +               +DG 
Sbjct: 17  DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL--------------LDGK 62

Query: 106 DLSSNP--------------LLYMMRCFP---------------GVP-EQKLRAHLGSFG 135
           D++                 L      FP                +   +++        
Sbjct: 63  DVTDLSPEKHDIAFVYQNYSL------FPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLK 116

Query: 136 VTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP-SNHLDL 180
           +   L   P  TLSGG++ RVA A+     P I+LLDEP S  LD 
Sbjct: 117 IEHLLDRNP-LTLSGGEQQRVALARALVTNPKILLLDEPLSA-LDP 160

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score = 54.1 bits (131), Expect = 4e-09
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 3/72 (4%)

Query: 29 ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
          +   + +  +  GG  + K++NF I+    +A+ G  G GK+++L +I GEL+PS G + 
Sbjct: 7  VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 66

Query: 88 RSAKVRIAVFSQ 99
           S   RI+  SQ
Sbjct: 67 HSG--RISFCSQ 76

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score = 41.4 bits (98), Expect = 8e-05
 Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 17/94 (18%)

Query: 147 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQ---GGIL----- 198
           TLSGGQ++R++ A+  +K   + LLD P        ++ L     +F+     ++     
Sbjct: 130 TLSGGQRARISLARAVYKDADLYLLDSP-----FGYLDVLT-EKEIFESCVCKLMANKTR 183

Query: 199 -MVSHDEHLISGSVEELWVVSEGKATPFHGTFHD 231
            +V+     +    +++ ++ EG +  F+GTF +
Sbjct: 184 ILVTSKMEHLK-KADKILILHEGSSY-FYGTFSE 215

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598

 Score = 54.5 bits (132), Expect = 6e-09
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 16  EFPTPDDRPGPPI---ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTIL 72
           E   PD      +   I F +  F Y     + K++ F I    ++A+VGP G GK+TI+
Sbjct: 339 EKDDPDAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIV 398

Query: 73  KLI 75
            L+
Sbjct: 399 NLL 401

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score = 52.9 bits (128), Expect = 1e-08
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 29 ISFSDASFGY-PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
          I+  +A+F +    P     + F I   + +A+VG  G GKS++L  +  E+    G V 
Sbjct: 4  ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA 63

Query: 88 RSAKVRIAVFSQ 99
                +A   Q
Sbjct: 64 IKG--SVAYVPQ 73

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score = 53.3 bits (129), Expect = 2e-08
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 14/74 (18%)

Query: 15  FEF----PTPDDRPG----PPI---ISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMV 61
           F+         +  G          I     SF Y     PIL K++N  I+    +A V
Sbjct: 315 FQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPIL-KDINLSIEKGETVAFV 373

Query: 62  GPNGIGKSTILKLI 75
           G +G GKST++ LI
Sbjct: 374 GMSGGGKSTLINLI 387

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 20/42 (47%), Positives = 31/42 (73%), Gaps = 1/42 (2%)

Query: 147 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 188
            LSGGQK R++ A+I    P I++LDE ++ LDL++ E++IQ
Sbjct: 477 KLSGGQKQRLSIARIFLNNPPILILDEATSALDLES-ESIIQ 517

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score = 52.6 bits (127), Expect = 3e-08
 Identities = 28/104 (26%), Positives = 39/104 (37%), Gaps = 26/104 (25%)

Query: 15  FEF----PTPDDRPGPPI-----ISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGP 63
           F         D+           + F + +F YPG   P L +N+N  I     +A+VG 
Sbjct: 319 FAILDSEQEKDEGKRVIDRATGDLEFRNVTFTYPGREVPAL-RNINLKIPAGKTVALVGR 377

Query: 64  NGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDL 107
           +G GKSTI  LI        G +               +DG DL
Sbjct: 378 SGSGKSTIASLITRFYDIDEGHIL--------------MDGHDL 407

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score = 43.3 bits (103), Expect = 3e-05
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 147 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 188
            LSGGQ+ R+A A+   +   I++LDE ++ LD ++ E  IQ
Sbjct: 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTES-ERAIQ 520

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score = 52.6 bits (127), Expect = 3e-08
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 17/81 (20%)

Query: 29  ISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86
           +   D +F Y G   P L  +++F I     +A+VG +G GKSTI  L        SG++
Sbjct: 342 VDVKDVTFTYQGKEKPAL-SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSI 400

Query: 87  FRSAKVRIAVFSQHHVDGLDL 107
                          +DG D+
Sbjct: 401 C--------------LDGHDV 407

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 147 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 188
           +LSGGQ+ RVA A+   +   +++LDE ++ LD ++ E  IQ
Sbjct: 480 SLSGGQRQRVAIARALLRDAPVLILDEATSALDTES-ERAIQ 520

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score = 52.2 bits (126), Expect = 4e-08
 Identities = 34/132 (25%), Positives = 51/132 (38%), Gaps = 30/132 (22%)

Query: 4   VDEVVN-DPDYKFEFPTPDDRPGPPIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAM 60
           V EV+N  P  +              +SF +  F Y     P+L   +NF +   S +A+
Sbjct: 316 VLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVL-SGVNFSVKPGSLVAV 374

Query: 61  VGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP 120
           +G  G GKST++ LI   + P  G V               VD LD+ +           
Sbjct: 375 LGETGSGKSTLMNLIPRLIDPERGRVE--------------VDELDVRT----------- 409

Query: 121 GVPEQKLRAHLG 132
            V  + LR H+ 
Sbjct: 410 -VKLKDLRGHIS 420

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 51.5 bits (124), Expect = 5e-08
 Identities = 45/216 (20%), Positives = 75/216 (34%), Gaps = 74/216 (34%)

Query: 11  PDYKFEFPTPDDRPGPPIISFSDAS--FGYPGGPIL-FKNLNFGIDLDSRIAMVGPNGIG 67
             +        D     +I  S+ +  F      I    N++  +       ++G +G G
Sbjct: 7   HHHHHHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAG 66

Query: 68  KSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKL 127
           KST+++ +    +P+ G+V               VDG +L++            + E +L
Sbjct: 67  KSTLIRCVNLLERPTEGSVL--------------VDGQELTT------------LSESEL 100

Query: 128 RAH-------------LGSFGVTGNLALQPM----------------------------- 145
                           L S  V GN+AL P+                             
Sbjct: 101 TKARRQIGMIFQHFNLLSSRTVFGNVAL-PLELDNTPKDEVKRRVTELLSLVGLGDKHDS 159

Query: 146 Y--TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
           Y   LSGGQK RVA A+     P ++L D+ ++ LD
Sbjct: 160 YPSNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 24/69 (34%), Positives = 36/69 (52%)

Query: 19 TPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE 78
                G   I F      YPGG    + ++F I     + ++GP+G GK+TIL+LIAG 
Sbjct: 5  HHHHHHGSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGL 64

Query: 79 LQPSSGTVF 87
           +P+ G V+
Sbjct: 65 ERPTKGDVW 73

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 148 LSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL 180
           LSGGQ+ RVA A+    +P ++L DEP   +D 
Sbjct: 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDT 178

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 39/176 (22%), Positives = 64/176 (36%), Gaps = 61/176 (34%)

Query: 51  GIDLDSR----IAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD 106
           G+ L +R    I+++G +G GKST L+ I    +PS G +               V+G +
Sbjct: 24  GVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII--------------VNGQN 69

Query: 107 LSSNPLLYMMRCFPGVPE-QKLRAHLG----SFG------VTGNLALQPMY--------- 146
           ++               + + LR  L      F       V  N+   P+          
Sbjct: 70  INLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDA 129

Query: 147 -----------------------TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
                                   LSGGQ+ RV+ A+    +P ++L DEP++ LD
Sbjct: 130 RERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALD 185

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148

 Score = 47.4 bits (113), Expect = 4e-07
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 9/74 (12%)

Query: 143 QPMYTLSGGQKSRVAFA------KITFKKPHIILLDEPSNHLDLDAVEALIQGLV-LFQG 195
           +P+  LSGG++  +  A           +  +++LDEP+ +LD +    LI  +    + 
Sbjct: 53  RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK 112

Query: 196 G--ILMVSHDEHLI 207
              +++VSHDE L 
Sbjct: 113 IPQVILVSHDEELK 126

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score = 45.3 bits (108), Expect = 6e-06
 Identities = 47/186 (25%), Positives = 73/186 (39%), Gaps = 48/186 (25%)

Query: 29  ISFSDASFGYPGGPIL-FKNLNFGIDLDSRIAMVGPNGIGKSTILK-------------L 74
           I   + S  +  G ++   N+N  I+   R  ++GP+G GK+T ++              
Sbjct: 4   IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63

Query: 75  IAGELQPSSGTVFRSAKVR-IA-VFSQHHVDGLDLSSNPLLY--M-----MRCFP----G 121
               L  S+G +    + R I  VF Q             LY  +     +  FP     
Sbjct: 64  FDDRLVASNGKLIVPPEDRKIGMVF-Q----------TWALYPNLTAFENIA-FPLTNMK 111

Query: 122 VP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP-SN 176
           +      +++        +   L   P   LSG Q+ RVA A+   K P ++LLDEP SN
Sbjct: 112 MSKEEIRKRVEEVAKILDIHHVLNHFP-RELSGAQQQRVALARALVKDPSLLLLDEPFSN 170

Query: 177 HLDLDA 182
              LDA
Sbjct: 171 ---LDA 173

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 9/72 (12%)

Query: 144 PMYTLSGGQKSRVAFA-------KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGG 196
            +  LSGG++  VA +        +   +   I+LDEP+ +LD +    L +     +  
Sbjct: 277 TIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSI 336

Query: 197 --ILMVSHDEHL 206
             +++++H   L
Sbjct: 337 PQMIIITHHREL 348

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 43.3 bits (103), Expect = 3e-05
 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 6/61 (9%)

Query: 148 LSGGQKSRVAFAKITFKKPHIILLDEP-SNHLDLDAVEALIQGL--VLFQGGI--LMVSH 202
           LSGGQ+ R A A+     P +ILLDEP S  LD      + + +   L   G   + VSH
Sbjct: 139 LSGGQQQRAALARALAPDPELILLDEPFSA-LDEQLRRQIREDMIAALRANGKSAVFVSH 197

Query: 203 D 203
           D
Sbjct: 198 D 198

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 41.8 bits (99), Expect = 8e-05
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86
            +     S  +   P+L  +++  +D    + ++G +G GK+T+L+ +AG  QP SG +
Sbjct: 3  AALHIGHLSKSFQNTPVL-NDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61

Query: 87 F 87
           
Sbjct: 62 S 62

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 35/262 (13%), Positives = 76/262 (29%), Gaps = 61/262 (23%)

Query: 4   VDEVVNDPDYKF---EFPTPDDRPGPPIISFSDASFGYPGGPILFKNLN----------- 49
           V+EV+   +YKF      T   +P      + +          +F   N           
Sbjct: 83  VEEVL-RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141

Query: 50  ---FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHH-VD-G 104
                +     + + G  G GK+    +           V  S KV+  +  +   ++  
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTW---VAL--------DVCLSYKVQCKMDFKIFWLNLK 190

Query: 105 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK 164
              S   +L M+        QKL   +     + +     +       ++     ++   
Sbjct: 191 NCNSPETVLEML--------QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE--LRRLLKS 240

Query: 165 KPH---IILLDEPSNHLDLDAVEALIQGLVLFQGG--ILMVSHDEHLIS--GSVEELWVV 217
           KP+   +++L    N    +A          F     IL+ +  + +     +     + 
Sbjct: 241 KPYENCLLVLLNVQNAKAWNA----------FNLSCKILLTTRFKQVTDFLSAATTTHIS 290

Query: 218 SEGKATPFHGTFHDYKKMLQSR 239
            +  +        D  K L  +
Sbjct: 291 LDHHSMTLT---PDEVKSLLLK 309

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
          I   +    +     L  N+N  I     +A++GP+G GKST+L  IAG  +P+SG ++
Sbjct: 4  IKLENIVKKFGNFTAL-NNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIY 61

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 21/36 (58%), Positives = 26/36 (72%), Gaps = 4/36 (11%)

Query: 148 LSGGQKSRVAFAKITFKKPHIILLDEP-SNHLDLDA 182
           LSGGQ+ RVA A+   K+P ++LLDEP SN   LDA
Sbjct: 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSN---LDA 166

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 16/50 (32%), Positives = 30/50 (60%)

Query: 38 YPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
          Y G       ++F +     +A++GP+G GK+T L ++AG  +P+SG ++
Sbjct: 12 YFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIY 61

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
          +   D    +     + + ++  +     + ++GP+G GK+T L++IAG  +PS G ++
Sbjct: 4  VRLVDVWKVFGEVTAV-REMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
          +   + +  +     +   LN  I     + ++GP+G GK+T L++IAG  +P+ G ++
Sbjct: 12 VKLENLTKRFGNFTAV-NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 69

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381

 Score = 39.1 bits (92), Expect = 7e-04
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 4/41 (9%)

Query: 51 GIDLDSR----IAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           I+LD      +  VGP+G GKST+L++IAG    +SG +F
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	239
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	100.0
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	100.0
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	100.0
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	100.0
1b0u_A	262	Histidine permease; ABC transporter, transport pro	100.0
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	100.0
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	100.0
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	100.0
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	100.0
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	100.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	100.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	100.0
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	100.0
1g6h_A	257	High-affinity branched-chain amino acid transport	100.0
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	100.0
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	100.0
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	100.0
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	100.0
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	100.0
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	100.0
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	100.0
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	100.0
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	100.0
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	100.0
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	100.0
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	100.0
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	100.0
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	100.0
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	100.0
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	100.0
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	100.0
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	100.0
2ghi_A	260	Transport protein; multidrug resistance protein, M	100.0
1sgw_A	214	Putative ABC transporter; structural genomics, P p	100.0
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	100.0
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	100.0
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	100.0
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	100.0
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	100.0
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	100.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	100.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	100.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	100.0
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	100.0
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	100.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	100.0
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	100.0
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	100.0
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	100.0
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	100.0
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	100.0
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	100.0
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	100.0
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.97
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.97
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.97
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.96
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.96
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.94
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.94
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.93
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.92
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.92
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.92
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.92
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.92
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.92
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.92
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.91
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.91
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.91
2og2_A	359	Putative signal recognition particle receptor; nuc	99.91
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.89
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.89
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.89
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.89
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.88
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.88
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.88
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.87
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.87
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.87
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.87
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.86
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.86
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.86
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.85
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.85
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.84
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.83
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.82
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.81
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.81
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.81
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.8
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.79
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.76
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.76
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.75
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.75
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.74
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.73
2ewv_A	372	Twitching motility protein PILT; pilus retraction	99.73
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.72
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.72
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.67
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	99.67
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.65
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.64
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.62
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.59
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.58
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.57
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.57
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.57
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.55
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.55
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	99.52
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.51
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.5
1p9r_A	418	General secretion pathway protein E; bacterial typ	99.5
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.5
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	99.49
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	99.48
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	99.48
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	99.46
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	99.46
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.46
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.45
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.4
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.4
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	99.39
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	99.39
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	99.37
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	99.36
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.35
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	99.35
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	99.29
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.26
2r6a_A	454	DNAB helicase, replicative helicase; replication,	99.23
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.22
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.2
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	99.14
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	99.11
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.1
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	99.06
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	99.05
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	99.05
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	99.03
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	99.03
3kta_A	182	Chromosome segregation protein SMC; structural mai	99.02
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.97
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.97
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.93
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.93
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.92
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	98.87
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.83
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.83
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.81
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.78
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.74
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.7
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.68
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.66
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	98.65
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.63
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.63
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.6
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	98.58
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.53
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	98.52
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.5
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.49
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.49
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.48
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.47
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.46
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.46
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.45
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.44
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.44
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	98.42
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.39
2z43_A	324	DNA repair and recombination protein RADA; archaea	98.38
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.36
3ice_A	422	Transcription termination factor RHO; transcriptio	98.35
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.35
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.35
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	98.33
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.32
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	98.31
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	98.28
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.25
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	98.21
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.2
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.18
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	98.15
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	98.09
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.08
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.07
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	98.05
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.03
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	98.02
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	98.02
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	98.01
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.96
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.94
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.93
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.88
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.86
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.85
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.83
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.82
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.82
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.8
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.8
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.8
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.78
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.77
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.74
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.74
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.7
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.69
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	97.65
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	97.65
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.62
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.62
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.58
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.58
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.58
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.58
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.56
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.51
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.51
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	97.48
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	97.46
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.45
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.43
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.42
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.38
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	97.35
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.35
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.34
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.3
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.29
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.28
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.28
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.28
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.27
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.27
1via_A	175	Shikimate kinase; structural genomics, transferase	97.27
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	97.26
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.26
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.26
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	97.22
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.21
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.2
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.2
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.18
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.13
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.12
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.11
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.11
3io5_A	333	Recombination and repair protein; storage dimer, i	97.11
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.11
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.1
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.1
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	97.09
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.08
2ged_A	193	SR-beta, signal recognition particle receptor beta	97.08
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.08
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.06
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	97.06
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.05
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.04
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	97.04
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.04
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.03
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.03
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	97.02
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	97.01
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.01
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	97.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.99
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.99
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.99
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.98
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.98
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.95
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.95
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.94
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.94
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.93
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.93
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.93
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.92
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.91
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.9
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.9
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.9
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.9
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.89
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.89
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.89
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.89
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.88
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.87
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.87
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.86
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.86
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.86
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.86
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.85
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.84
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.84
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.84
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.83
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.83
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.83
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.83
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.83
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.82
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.82
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.81
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.8
3bos_A	242	Putative DNA replication factor; P-loop containing	96.8
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.8
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.79
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.79
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.79
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	96.78
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.78
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.78
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.77
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.77
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.77
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.77
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.76
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.76
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.75
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.74
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.74
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.73
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	96.71
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.71
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	96.71
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.71
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.7
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.7
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.7
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.7
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	96.69
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.69
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.68
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.68
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	96.68
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.68
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.68
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.67
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.66
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.65
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	96.65
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.64
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	96.64
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.64
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.63
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.63
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.63
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	96.62
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	96.62
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.62
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	96.61
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.61
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.61
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	96.6
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.6
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	96.6
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.59
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.59
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	96.59
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	96.59
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	96.58
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.58
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.58
3llu_A	196	RAS-related GTP-binding protein C; structural geno	96.58
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	96.57
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.57
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.57
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.56
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.56
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.55
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.55
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	96.54
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.54
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	96.54
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	96.54
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.54
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	96.53
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.53
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.53
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	96.52
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	96.51
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	96.51
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	96.5
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.5
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.49
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	96.49
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	96.49
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.48
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.47
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.47
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.47
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.46
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	96.45
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	96.43
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.42
2fh5_B	214	SR-beta, signal recognition particle receptor beta	96.41
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	96.4
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	96.4
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.4
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.39
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.39
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	96.39
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	96.39
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.39
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.37
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.37
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	96.35
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	96.35
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.34
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	96.34
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.33
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.32
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	96.3
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.29
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.26
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.25
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.24
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.24
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.24
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	96.24
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	96.22
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.21
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	96.21
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.2
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	96.19
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.19
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.18
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	96.17
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.15
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.14
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	96.08
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.07
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	96.05
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.05
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.03
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.02
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.01
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.0
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.0
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.94
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	95.94
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	95.85
1wxq_A	397	GTP-binding protein; structural genomics, riken st	95.84
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	95.8
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	95.8
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.79
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	95.77
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	95.73
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.71
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	95.66
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.64
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	95.63
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.6
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	95.6
3pvs_A	447	Replication-associated recombination protein A; ma	95.53
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	95.52
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	95.49
2qgz_A	308	Helicase loader, putative primosome component; str	95.49
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.44
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	95.4
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	95.38
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.37
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	95.35
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.35
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.29
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	95.29

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=100.00  E-value=1.7e-55  Score=377.82  Aligned_cols=206  Identities=27%  Similarity=0.424  Sum_probs=173.2

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------e
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------V   92 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~   92 (239)
                      +++|+++||+++|+++..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.             .
T Consensus         5 ~~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~   84 (275)
T 3gfo_A            5 DYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE   84 (275)
T ss_dssp             CEEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred             CcEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence            358999999999965556999999999999999999999999999999999999999999998773             2


Q ss_pred             EEEEEeeccCCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 026376           93 RIAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP  166 (239)
Q Consensus        93 ~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p  166 (239)
                      .++|++|++...+. ..++.+++..  ......    .+++.++++.+++. ...++++.+|||||||||+|||||+.+|
T Consensus        85 ~ig~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~iAraL~~~P  162 (275)
T 3gfo_A           85 SIGIVFQDPDNQLF-SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEP  162 (275)
T ss_dssp             SEEEECSSGGGTCC-SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             cEEEEEcCcccccc-cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence            49999998632222 3455544431  111222    34678899999996 4678899999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          167 HIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       167 ~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      ++|||||||+|||+.++..+++.+++    .+.|||+||||++++..+||++++|++|+++ +.|+++++..
T Consensus       163 ~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~-~~g~~~~~~~  233 (275)
T 3gfo_A          163 KVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVI-LQGNPKEVFA  233 (275)
T ss_dssp             SEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEE-EEECHHHHTH
T ss_pred             CEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHhc
Confidence            99999999999999999888776653    3679999999999999999999999999997 6799887643

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=100.00  E-value=1.1e-54  Score=384.38  Aligned_cols=205  Identities=20%  Similarity=0.283  Sum_probs=172.0

Q ss_pred             CCCeEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------
Q 026376           25 GPPIISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------   91 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------   91 (239)
                      .+++|+++||++.|+++   ..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.          
T Consensus        21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~  100 (366)
T 3tui_C           21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL  100 (366)
T ss_dssp             --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred             CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence            45689999999999532   35899999999999999999999999999999999999999999998763          


Q ss_pred             ----eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 026376           92 ----VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI  161 (239)
Q Consensus        92 ----~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lara  161 (239)
                          ..++|+||++..  ....++.+++..  .....    ..+++.++|+.+|+.+ ..++++.+|||||||||+||||
T Consensus       101 ~~~r~~Ig~v~Q~~~l--~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~-~~~~~~~~LSGGqkQRVaIArA  177 (366)
T 3tui_C          101 TKARRQIGMIFQHFNL--LSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD-KHDSYPSNLSGGQKQRVAIARA  177 (366)
T ss_dssp             HHHHTTEEEECSSCCC--CTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG-GTTCCTTTSCHHHHHHHHHHHH
T ss_pred             HHHhCcEEEEeCCCcc--CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHH
Confidence                259999998742  233455444431  11122    2356788999999974 5788999999999999999999


Q ss_pred             hccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          162 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       162 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      |+.+|++|||||||++||+.++..+++.|++.    +.|||+||||++++.++|||+++|++|+++ ..|+++++.
T Consensus       178 L~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv-~~g~~~ev~  252 (366)
T 3tui_C          178 LASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELI-EQDTVSEVF  252 (366)
T ss_dssp             TTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEE-ECCBHHHHH
T ss_pred             HhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence            99999999999999999999999888777543    679999999999999999999999999997 689887764

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=100.00  E-value=9e-55  Score=365.70  Aligned_cols=202  Identities=24%  Similarity=0.337  Sum_probs=165.2

Q ss_pred             eEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------
Q 026376           28 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------   91 (239)
Q Consensus        28 ~l~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------   91 (239)
                      +|+++||+++|+++   ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.             
T Consensus         1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~   80 (235)
T 3tif_A            1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI   80 (235)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred             CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence            58999999999632   35899999999999999999999999999999999999999999998773             


Q ss_pred             --eEEEEEeeccCCCCCCCCcHHHHHHH--hCC---CCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 026376           92 --VRIAVFSQHHVDGLDLSSNPLLYMMR--CFP---GVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK  160 (239)
Q Consensus        92 --~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lar  160 (239)
                        ..++|++|++..  ....++.+++..  ...   ...    .+++.++++.+++.+...++++.+|||||||||+|||
T Consensus        81 ~~~~i~~v~Q~~~l--~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAr  158 (235)
T 3tif_A           81 RRDKIGFVFQQFNL--IPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIAR  158 (235)
T ss_dssp             HHHHEEEECTTCCC--CTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred             hhccEEEEecCCcc--CCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHH
Confidence              149999998743  223345444421  111   111    3457788999999754457899999999999999999


Q ss_pred             HhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          161 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       161 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      ||+.+|++|||||||++||+.++..+++.+++.    +.|||+||||++.+ .+||++++|++|+++ ..++.+++.
T Consensus       159 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~-~~~~~~~~~  233 (235)
T 3tif_A          159 ALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVE-REEKLRGFD  233 (235)
T ss_dssp             HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEE-EEEECC---
T ss_pred             HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEE-EEcChhhhc
Confidence            999999999999999999999999888777543    67999999999965 689999999999997 567776654

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=100.00  E-value=4.1e-54  Score=367.12  Aligned_cols=203  Identities=22%  Similarity=0.260  Sum_probs=170.5

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------eE
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VR   93 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~   93 (239)
                      ++|+++||+++|+ +..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.             ..
T Consensus        23 ~~l~i~~l~~~y~-~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~  101 (263)
T 2olj_A           23 QMIDVHQLKKSFG-SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE  101 (263)
T ss_dssp             CSEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred             heEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence            4799999999994 557999999999999999999999999999999999999999999998763             14


Q ss_pred             EEEEeeccCCCCCCCCcHHHHHHH---hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 026376           94 IAVFSQHHVDGLDLSSNPLLYMMR---CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP  166 (239)
Q Consensus        94 ~~~~~q~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p  166 (239)
                      ++|++|++..  ....++.+++..   ......    .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|
T Consensus       102 i~~v~Q~~~l--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~lAraL~~~p  178 (263)
T 2olj_A          102 VGMVFQRFNL--FPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKD-KAHAYPDSLSGGQAQRVAIARALAMEP  178 (263)
T ss_dssp             EEEECSSCCC--CTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             EEEEeCCCcC--CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-HhcCChhhCCHHHHHHHHHHHHHHCCC
Confidence            8999998642  222344444321   111222    346788999999964 567899999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          167 HIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       167 ~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      ++|||||||++||+.++..+.+.+++.   +.|||+||||++++..+||++++|++|+++ +.|+++++..
T Consensus       179 ~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~  248 (263)
T 2olj_A          179 KIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYII-EEGKPEDLFD  248 (263)
T ss_dssp             SEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHh
Confidence            999999999999999999888877543   679999999999999999999999999997 5788887643

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=100.00  E-value=5.4e-54  Score=366.39  Aligned_cols=202  Identities=22%  Similarity=0.304  Sum_probs=169.5

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------------
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------   91 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------   91 (239)
                      ++|+++|++++|+ +..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.               
T Consensus         5 ~~l~i~~l~~~y~-~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~   83 (262)
T 1b0u_A            5 NKLHVIDLHKRYG-GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA   83 (262)
T ss_dssp             CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred             ceEEEeeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence            4799999999994 567999999999999999999999999999999999999999999988762               


Q ss_pred             ---------eEEEEEeeccCCCCCCCCcHHHHHHH---hCCCCc----HHHHHHHHHhcCCCccc-ccCCCCCCChHHHH
Q 026376           92 ---------VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPGVP----EQKLRAHLGSFGVTGNL-ALQPMYTLSGGQKS  154 (239)
Q Consensus        92 ---------~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~l~~~~l~~~~-~~~~~~~LSgGqkq  154 (239)
                               ..++|++|++..  ....++.+++..   ......    .+++.++++.+++.+ . .++++.+|||||||
T Consensus        84 ~~~~~~~~~~~i~~v~Q~~~l--~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~~LSgGq~q  160 (262)
T 1b0u_A           84 DKNQLRLLRTRLTMVFQHFNL--WSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDE-RAQGKYPVHLSGGQQQ  160 (262)
T ss_dssp             CHHHHHHHHHHEEEECSSCCC--CTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCH-HHHTSCGGGSCHHHHH
T ss_pred             ChhhHHHHhcceEEEecCccc--CCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCc-hhhcCCcccCCHHHHH
Confidence                     138999998632  222344444321   111222    346788999999974 4 67889999999999


Q ss_pred             HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhH
Q 026376          155 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD  231 (239)
Q Consensus       155 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~  231 (239)
                      ||+|||||+.+|++|||||||+|||+.++..+.+.+++   .+.|||+||||++++..+||++++|++|+++ ..|++++
T Consensus       161 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~  239 (262)
T 1b0u_A          161 RVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE-EEGDPEQ  239 (262)
T ss_dssp             HHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHH
T ss_pred             HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHH
Confidence            99999999999999999999999999999988877654   3679999999999999999999999999997 5788877


Q ss_pred             HH
Q 026376          232 YK  233 (239)
Q Consensus       232 ~~  233 (239)
                      +.
T Consensus       240 ~~  241 (262)
T 1b0u_A          240 VF  241 (262)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=100.00  E-value=3.7e-54  Score=380.77  Aligned_cols=202  Identities=25%  Similarity=0.347  Sum_probs=172.5

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------eEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------VRI   94 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~~~   94 (239)
                      +|+++||+++|+ +..+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.+++.             ..+
T Consensus         4 ~l~i~~ls~~y~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~i   82 (359)
T 3fvq_A            4 ALHIGHLSKSFQ-NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRL   82 (359)
T ss_dssp             CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCC
T ss_pred             EEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCE
Confidence            699999999994 567999999999999999999999999999999999999999999998763             249


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHhCC--C----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRCFP--G----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI  168 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~l  168 (239)
                      +|+||++.  +....++.+++.....  .    ...+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++
T Consensus        83 g~vfQ~~~--l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-~~~r~~~~LSGGq~QRValArAL~~~P~l  159 (359)
T 3fvq_A           83 GYLVQEGV--LFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISE-LAGRYPHELSGGQQQRAALARALAPDPEL  159 (359)
T ss_dssp             EEECTTCC--CCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred             EEEeCCCc--CCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence            99999864  3334466666543211  1    12356889999999974 67899999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          169 ILLDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       169 lllDEPt~~LD~~~~~~l~~~l~----~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |||||||++||+..+..+.+.+.    +.+.|||+||||++++..+||||++|++|+++ ..|+++++..
T Consensus       160 LLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~-~~g~~~el~~  228 (359)
T 3fvq_A          160 ILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRIL-QTASPHELYR  228 (359)
T ss_dssp             EEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEE-EEeCHHHHHh
Confidence            99999999999999888766443    44779999999999999999999999999997 6789888654

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=100.00  E-value=4.4e-54  Score=367.62  Aligned_cols=202  Identities=25%  Similarity=0.355  Sum_probs=172.6

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEE
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA   95 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~   95 (239)
                      ++|+++|+++.|+ +..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.           ..++
T Consensus        10 ~~l~~~~l~~~~~-~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~   88 (266)
T 4g1u_C           10 ALLEASHLHYHVQ-QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA   88 (266)
T ss_dssp             CEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred             ceEEEEeEEEEeC-CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence            5899999999994 567999999999999999999999999999999999999999999998874           2489


Q ss_pred             EEeeccCCCCCCCCcHHHHHHHh---C-CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc------C
Q 026376           96 VFSQHHVDGLDLSSNPLLYMMRC---F-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK------K  165 (239)
Q Consensus        96 ~~~q~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~------~  165 (239)
                      |++|++...  +..++.+++...   . .....+++.++++.+++.+ ..++++.+|||||||||+|||||+.      +
T Consensus        89 ~v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~  165 (266)
T 4g1u_C           89 VMRQYSELA--FPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLA-LAQRDYRVLSGGEQQRVQLARVLAQLWQPQPT  165 (266)
T ss_dssp             EECSCCCCC--SCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCST-TTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCC
T ss_pred             EEecCCccC--CCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChh-HhcCCcccCCHHHHHHHHHHHHHhcccccCCC
Confidence            999986432  234555554321   1 1233567889999999974 5678899999999999999999999      9


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc---C-CEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          166 PHIILLDEPSNHLDLDAVEALIQGLVLF---Q-GGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       166 p~llllDEPt~~LD~~~~~~l~~~l~~~---~-~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      |++|||||||+|||+.++..+++.+++.   + .|||+||||++++..+||++++|++|+++ +.|+++++.
T Consensus       166 p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~-~~g~~~~~~  236 (266)
T 4g1u_C          166 PRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLV-ACGTPEEVL  236 (266)
T ss_dssp             CEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHC
T ss_pred             CCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEE-EEcCHHHHh
Confidence            9999999999999999999888877543   3 49999999999999999999999999997 678888763

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=7.8e-54  Score=364.11  Aligned_cols=204  Identities=21%  Similarity=0.274  Sum_probs=170.8

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEE
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIA   95 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~   95 (239)
                      .++|+++||+++|+ +..+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.          ..++
T Consensus        13 ~~~l~i~~l~~~y~-~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~   91 (256)
T 1vpl_A           13 MGAVVVKDLRKRIG-KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLIS   91 (256)
T ss_dssp             -CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEE
T ss_pred             CCeEEEEEEEEEEC-CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEE
Confidence            45799999999994 567999999999999999999999999999999999999999999998763          2499


Q ss_pred             EEeeccCCCCCCCCcHHHHHHH---hCCCCc---HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 026376           96 VFSQHHVDGLDLSSNPLLYMMR---CFPGVP---EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII  169 (239)
Q Consensus        96 ~~~q~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ll  169 (239)
                      |++|++...  ...++.+++..   ......   .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|
T Consensus        92 ~v~q~~~l~--~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~LSgGq~qRv~lAraL~~~p~ll  168 (256)
T 1vpl_A           92 YLPEEAGAY--RNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGE-KIKDRVSTYSKGMVRKLLIARALMVNPRLA  168 (256)
T ss_dssp             EECTTCCCC--TTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGG-GGGSBGGGCCHHHHHHHHHHHHHTTCCSEE
T ss_pred             EEcCCCCCC--CCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCch-HhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence            999986432  22344443321   111111   246788999999974 567889999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          170 LLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       170 llDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      ||||||++||+.++..+.+.|.+   .+.|||++|||++++..+||++++|++|+++ +.|+++++.+
T Consensus       169 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~  235 (256)
T 1vpl_A          169 ILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIV-ETGTVEELKE  235 (256)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEE-EEEEHHHHHH
T ss_pred             EEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEE-EecCHHHHHH
Confidence            99999999999999988877754   3679999999999999999999999999997 5788887754

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=100.00  E-value=6.5e-54  Score=358.04  Aligned_cols=196  Identities=22%  Similarity=0.319  Sum_probs=163.4

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------------
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------   91 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------   91 (239)
                      ++|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.               
T Consensus         3 ~~l~~~~l~~~y~-~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~   81 (224)
T 2pcj_A            3 EILRAENIKKVIR-GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN   81 (224)
T ss_dssp             EEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred             cEEEEEeEEEEEC-CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence            4799999999995 467999999999999999999999999999999999999999999998762               


Q ss_pred             eEEEEEeeccCCCCCCCCcHHHHHHH---hCCC---CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 026376           92 VRIAVFSQHHVDGLDLSSNPLLYMMR---CFPG---VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK  165 (239)
Q Consensus        92 ~~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~  165 (239)
                      ..++|++|++...  ...++.+++..   ....   ...+++.++++.+++.+ ..++++.+|||||||||+|||||+.+
T Consensus        82 ~~i~~v~q~~~l~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~laral~~~  158 (224)
T 2pcj_A           82 RKLGFVFQFHYLI--PELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGD-KLSRKPYELSGGEQQRVAIARALANE  158 (224)
T ss_dssp             HHEEEECSSCCCC--TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTT-CTTCCGGGSCHHHHHHHHHHHHTTTC
T ss_pred             CcEEEEecCcccC--CCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHHHHcC
Confidence            2499999986422  22344443321   1111   12346788999999974 56788999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCC
Q 026376          166 PHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGT  228 (239)
Q Consensus       166 p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~  228 (239)
                      |++|||||||++||+.++..+.+.+++.   +.|||+||||++++ .+||++++|++|+++ +.|+
T Consensus       159 p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~-~~g~  222 (224)
T 2pcj_A          159 PILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVV-GEIT  222 (224)
T ss_dssp             CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEE-EEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEE-EEee
Confidence            9999999999999999999888777543   67999999999988 799999999999996 4553

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=100.00  E-value=1.6e-53  Score=376.65  Aligned_cols=206  Identities=27%  Similarity=0.365  Sum_probs=173.2

Q ss_pred             CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEE
Q 026376           25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIA   95 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~   95 (239)
                      +.++|+++|++++|+++..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++.         ..++
T Consensus        11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig   90 (355)
T 1z47_A           11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVG   90 (355)
T ss_dssp             CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEE
T ss_pred             CCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEE
Confidence            5678999999999933456899999999999999999999999999999999999999999998763         3599


Q ss_pred             EEeeccCCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 026376           96 VFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII  169 (239)
Q Consensus        96 ~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ll  169 (239)
                      |++|++...  ...++.+++..  ......    .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|
T Consensus        91 ~v~Q~~~l~--~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-~~~r~~~~LSGGq~QRvalArAL~~~P~lL  167 (355)
T 1z47_A           91 LVFQNYALF--QHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLES-YANRFPHELSGGQQQRVALARALAPRPQVL  167 (355)
T ss_dssp             EECGGGCCC--TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred             EEecCcccC--CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-HhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            999986432  23344444321  111111    356888999999974 678899999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          170 LLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       170 llDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      ||||||++||+..+..+.+.|++    .+.|||+||||++++..+||++++|++|+++ ..|+++++.+
T Consensus       168 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~-~~g~~~~l~~  235 (355)
T 1z47_A          168 LFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVE-QFGTPEEVYE  235 (355)
T ss_dssp             EEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence            99999999999999888777654    3679999999999999999999999999997 5788887654

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=100.00  E-value=1e-53  Score=380.28  Aligned_cols=202  Identities=23%  Similarity=0.316  Sum_probs=171.9

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEe
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS   98 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~   98 (239)
                      +|+++||+++|+ +..+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.+++.         ..++|+|
T Consensus         3 ~l~~~~l~~~yg-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~Vf   81 (381)
T 3rlf_A            3 SVQLQNVTKAWG-EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVF   81 (381)
T ss_dssp             CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEEC
T ss_pred             EEEEEeEEEEEC-CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEe
Confidence            589999999994 567999999999999999999999999999999999999999999998774         3599999


Q ss_pred             eccCCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376           99 QHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD  172 (239)
Q Consensus        99 q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD  172 (239)
                      |++..  ....++.+++..  ......    .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||||
T Consensus        82 Q~~~l--~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLD  158 (381)
T 3rlf_A           82 QSYAL--YPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH-LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD  158 (381)
T ss_dssp             TTCCC--CTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGG-GTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred             cCCcC--CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-hhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            99743  333455544421  111222    356888999999974 678899999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          173 EPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       173 EPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |||++||+..+..+.+.|++    .+.|+|+||||++++..+||||++|++|+++ ..|+++++.+
T Consensus       159 EPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~-~~g~~~~l~~  223 (381)
T 3rlf_A          159 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVA-QVGKPLELYH  223 (381)
T ss_dssp             STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EEeCHHHHHh
Confidence            99999999998888776654    3779999999999999999999999999997 5788887643

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=1.1e-53  Score=360.09  Aligned_cols=203  Identities=19%  Similarity=0.246  Sum_probs=169.1

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce------------E
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------------R   93 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------------~   93 (239)
                      .++|+++|++++|+ +..+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++..            .
T Consensus         4 ~~~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~   82 (240)
T 1ji0_A            4 DIVLEVQSLHVYYG-AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG   82 (240)
T ss_dssp             SEEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred             CceEEEEeEEEEEC-CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence            35899999999995 4679999999999999999999999999999999999999999999987631            3


Q ss_pred             EEEEeeccCCCCCCCCcHHHHHHHh-CC--CC--cHHHHHHHHHhcC-CCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 026376           94 IAVFSQHHVDGLDLSSNPLLYMMRC-FP--GV--PEQKLRAHLGSFG-VTGNLALQPMYTLSGGQKSRVAFAKITFKKPH  167 (239)
Q Consensus        94 ~~~~~q~~~~~~~~~~~~~~~~~~~-~~--~~--~~~~~~~~l~~~~-l~~~~~~~~~~~LSgGqkqrv~laral~~~p~  167 (239)
                      ++|++|++..  ....+..+++... ..  ..  ..+.+.++++.++ +.+ ..++++.+|||||||||+|||||+.+|+
T Consensus        83 i~~v~q~~~l--~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~~~~LSgGq~qrv~lAraL~~~p~  159 (240)
T 1ji0_A           83 IALVPEGRRI--FPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE-RLKQLGGTLSGGEQQMLAIGRALMSRPK  159 (240)
T ss_dssp             EEEECSSCCC--CTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHT-TTTSBSSSSCHHHHHHHHHHHHHTTCCS
T ss_pred             EEEEecCCcc--CCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhh-HhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence            9999998642  2233555554321 11  11  1345677888884 853 5678899999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          168 IILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       168 llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      +|||||||++||+.++..+++.+++.   +.|||+||||++++..+||++++|++|+++ ..|+++++.
T Consensus       160 lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~  227 (240)
T 1ji0_A          160 LLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIV-LEGKASELL  227 (240)
T ss_dssp             EEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEE-EEEEHHHHH
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EEcCHHHHh
Confidence            99999999999999999888877543   569999999999999999999999999997 568877764

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=100.00  E-value=4.4e-54  Score=369.88  Aligned_cols=205  Identities=22%  Similarity=0.329  Sum_probs=170.7

Q ss_pred             CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------
Q 026376           25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------   91 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------   91 (239)
                      ..++|+++||+++|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.             
T Consensus        18 ~~~~l~~~~l~~~y~-~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~   96 (279)
T 2ihy_A           18 SHMLIQLDQIGRMKQ-GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR   96 (279)
T ss_dssp             -CEEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred             CCceEEEEeEEEEEC-CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence            455899999999995 467999999999999999999999999999999999999999999998762             


Q ss_pred             eEEEEEeeccCCCCCCCCcHHHHHHHhC-------CCC---cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHH
Q 026376           92 VRIAVFSQHHVDGLDLSSNPLLYMMRCF-------PGV---PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI  161 (239)
Q Consensus        92 ~~~~~~~q~~~~~~~~~~~~~~~~~~~~-------~~~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lara  161 (239)
                      ..++|++|++...+....++.+++....       ...   ..+++.++++.+++.+ ..++++.+|||||||||+||||
T Consensus        97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGqkqRv~lAra  175 (279)
T 2ihy_A           97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSA-KAQQYIGYLSTGEKQRVMIARA  175 (279)
T ss_dssp             TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGG-GTTSBGGGSCHHHHHHHHHHHH
T ss_pred             CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHH
Confidence            2489999986432322235555543210       011   1346788999999964 5678999999999999999999


Q ss_pred             hccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEE--EEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376          162 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGI--LMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       162 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~ti--i~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                      |+.+|++|||||||+|||+.++..+++.|++.   +.||  |+||||++++..+||++++|++|+++ +.|+++++
T Consensus       176 L~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~  250 (279)
T 2ihy_A          176 LMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSI-QQGAVEDI  250 (279)
T ss_dssp             HHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEE-EEEEHHHH
T ss_pred             HhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence            99999999999999999999999888877543   6789  99999999999999999999999997 57887765

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=100.00  E-value=4.6e-54  Score=365.92  Aligned_cols=201  Identities=19%  Similarity=0.251  Sum_probs=169.2

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------------eE
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------------VR   93 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~   93 (239)
                      .++|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.            ..
T Consensus         5 ~~~l~i~~l~~~y~-~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~   83 (257)
T 1g6h_A            5 MEILRTENIVKYFG-EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG   83 (257)
T ss_dssp             CEEEEEEEEEEEET-TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred             CcEEEEeeeEEEEC-CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence            34799999999994 567999999999999999999999999999999999999999999998763            14


Q ss_pred             EEEEeeccCCCCCCCCcHHHHHHHh--C--CC-----------C----cHHHHHHHHHhcCCCcccccCCCCCCChHHHH
Q 026376           94 IAVFSQHHVDGLDLSSNPLLYMMRC--F--PG-----------V----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKS  154 (239)
Q Consensus        94 ~~~~~q~~~~~~~~~~~~~~~~~~~--~--~~-----------~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq  154 (239)
                      ++|++|++..  ....++.+++...  .  ..           .    ..+++.++++.+++.+ ..++++.+|||||||
T Consensus        84 i~~v~q~~~l--~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkQ  160 (257)
T 1g6h_A           84 IVRTFQTPQP--LKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH-LYDRKAGELSGGQMK  160 (257)
T ss_dssp             EEECCCCCGG--GGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGG-GTTSBGGGSCHHHHH
T ss_pred             EEEEccCCcc--CCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCch-hhCCCchhCCHHHHH
Confidence            9999998632  2223444444321  1  01           1    1346788999999964 568899999999999


Q ss_pred             HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhH
Q 026376          155 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD  231 (239)
Q Consensus       155 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~  231 (239)
                      ||+|||||+.+|++|||||||+|||+.++..+++.+++.   +.|||+||||++++..+||++++|++|+++ +.|++++
T Consensus       161 rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~  239 (257)
T 1g6h_A          161 LVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII-AEGRGEE  239 (257)
T ss_dssp             HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE-EEEESHH
T ss_pred             HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EEeCHHH
Confidence            999999999999999999999999999999888877543   679999999999999999999999999997 5688777

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=100.00  E-value=8e-53  Score=359.92  Aligned_cols=204  Identities=25%  Similarity=0.420  Sum_probs=171.4

Q ss_pred             eEEEEeeEEEcC-CC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------eEEE
Q 026376           28 IISFSDASFGYP-GG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------VRIA   95 (239)
Q Consensus        28 ~l~~~~l~~~y~-~~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------~~~~   95 (239)
                      +|+++|++++|+ ++   +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.        ..++
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~   81 (266)
T 2yz2_A            2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG   81 (266)
T ss_dssp             CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred             EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence            689999999995 23   46999999999999999999999999999999999999999999999873        2499


Q ss_pred             EEeeccCCCCCCCCcHHHHHHHhC----C-CCcHHHHHHHHHhcCCC--cccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376           96 VFSQHHVDGLDLSSNPLLYMMRCF----P-GVPEQKLRAHLGSFGVT--GNLALQPMYTLSGGQKSRVAFAKITFKKPHI  168 (239)
Q Consensus        96 ~~~q~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~l~~~~l~--~~~~~~~~~~LSgGqkqrv~laral~~~p~l  168 (239)
                      |++|++...+ ...+..+++....    . ....+++.++++.+++.  + ..++++.+|||||||||+|||||+.+|++
T Consensus        82 ~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~~~LSgGq~qRv~lAraL~~~p~l  159 (266)
T 2yz2_A           82 IAFQYPEDQF-FAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDS-FKDRVPFFLSGGEKRRVAIASVIVHEPDI  159 (266)
T ss_dssp             EECSSGGGGC-CCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHH-HTTCCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred             EEeccchhhc-CCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcc-cccCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence            9999852111 2235555543211    1 12346788999999996  4 46788999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          169 ILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       169 lllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |||||||++||+.++..+.+.+++.   +.|||+||||++++..+||++++|++|+++ ..|+++++..
T Consensus       160 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~  227 (266)
T 2yz2_A          160 LILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKV-FDGTRMEFLE  227 (266)
T ss_dssp             EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEE-EEEEHHHHHH
T ss_pred             EEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHhc
Confidence            9999999999999999888877543   679999999999999999999999999997 5788877654

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=100.00  E-value=1.2e-52  Score=371.72  Aligned_cols=202  Identities=21%  Similarity=0.280  Sum_probs=172.2

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEe
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS   98 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~   98 (239)
                      +|+++|++++|+ +..+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.+++.         ..++|++
T Consensus         3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~   81 (359)
T 2yyz_A            3 SIRVVNLKKYFG-KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVF   81 (359)
T ss_dssp             CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred             EEEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEe
Confidence            589999999994 567999999999999999999999999999999999999999999998763         2599999


Q ss_pred             eccCCCCCCCCcHHHHHHHhC--CCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376           99 QHHVDGLDLSSNPLLYMMRCF--PGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD  172 (239)
Q Consensus        99 q~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD  172 (239)
                      |++..  ....++.+++....  ....    .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||||
T Consensus        82 Q~~~l--~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLD  158 (359)
T 2yyz_A           82 QNYAL--YPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDN-LLDRKPTQLSGGQQQRVALARALVKQPKVLLFD  158 (359)
T ss_dssp             SSCCC--CTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             cCccc--CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            98643  23345655554221  1111    346889999999974 578899999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          173 EPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       173 EPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |||++||+..+..+.+.+++    .+.|+|+||||++++..+||++++|++|+++ ..|+++++.+
T Consensus       159 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~-~~g~~~~l~~  223 (359)
T 2yyz_A          159 EPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLV-QYGTPDEVYD  223 (359)
T ss_dssp             STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHh
Confidence            99999999999888777654    3679999999999999999999999999997 5788888654

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.5e-52  Score=371.54  Aligned_cols=202  Identities=25%  Similarity=0.309  Sum_probs=170.9

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEe
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS   98 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~   98 (239)
                      +|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++.         ..++|++
T Consensus         3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~   81 (362)
T 2it1_A            3 EIKLENIVKKFG-NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVF   81 (362)
T ss_dssp             CEEEEEEEEESS-SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred             EEEEEeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEe
Confidence            589999999994 567999999999999999999999999999999999999999999998763         2599999


Q ss_pred             eccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376           99 QHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD  172 (239)
Q Consensus        99 q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD  172 (239)
                      |++...  ...++.+++..  .....    ..+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||||
T Consensus        82 Q~~~l~--~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD  158 (362)
T 2it1_A           82 QNWALY--PHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDK-LLNRYPWQLSGGQQQRVAIARALVKEPEVLLLD  158 (362)
T ss_dssp             TTCCCC--TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTT-CTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             cCcccC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-HhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            986432  23344444321  11111    1356788999999975 568899999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          173 EPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       173 EPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |||++||+..+..+.+.|++    .+.|+|+||||++++..+||++++|++|+++ ..|+++++..
T Consensus       159 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~-~~g~~~~~~~  223 (362)
T 2it1_A          159 EPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEIL-QVGTPDEVYY  223 (362)
T ss_dssp             SGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred             CccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence            99999999999888777654    3679999999999999999999999999997 5688887654

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=100.00  E-value=8.1e-53  Score=372.58  Aligned_cols=202  Identities=24%  Similarity=0.299  Sum_probs=171.3

Q ss_pred             eEEEEeeEEEcCCCCc--eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------------
Q 026376           28 IISFSDASFGYPGGPI--LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------   91 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~--~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------   91 (239)
                      +|+++|++++|+ +..  +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++.              
T Consensus         3 ~l~i~~l~~~y~-~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~   81 (353)
T 1oxx_K            3 RIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED   81 (353)
T ss_dssp             CEEEEEEEEEEG-GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred             EEEEEeEEEEEC-CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhh
Confidence            689999999994 456  999999999999999999999999999999999999999999988762              


Q ss_pred             eEEEEEeeccCCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 026376           92 VRIAVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK  165 (239)
Q Consensus        92 ~~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~  165 (239)
                      ..++|++|++..  ....++.+++...  .....    .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+
T Consensus        82 r~ig~v~Q~~~l--~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~LSGGq~QRvalAraL~~~  158 (353)
T 1oxx_K           82 RKIGMVFQTWAL--YPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH-VLNHFPRELSGAQQQRVALARALVKD  158 (353)
T ss_dssp             SCEEEEETTSCC--CTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEeCCCcc--CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHHHHhC
Confidence            248999998643  2334555555321  11112    356788999999974 67889999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          166 PHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       166 p~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |++|||||||++||+..+..+.+.|++    .+.|+|+||||++++..+||++++|++|+++ ..|+++++.+
T Consensus       159 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~-~~g~~~~l~~  230 (353)
T 1oxx_K          159 PSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLV-QVGKPEDLYD  230 (353)
T ss_dssp             CSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred             CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence            999999999999999999888777654    3679999999999999999999999999997 5688887653

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=100.00  E-value=9.2e-53  Score=357.05  Aligned_cols=198  Identities=24%  Similarity=0.350  Sum_probs=166.9

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCC
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDL  107 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~  107 (239)
                      +|+++|++++|+++..+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+.  ..++|++|++...  .
T Consensus         4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~--~~i~~v~q~~~~~--~   79 (253)
T 2nq2_C            4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY--QSIGFVPQFFSSP--F   79 (253)
T ss_dssp             EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEEC--SCEEEECSCCCCS--S
T ss_pred             eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEe--ccEEEEcCCCccC--C
Confidence            79999999999524679999999999999999999999999999999999999999999843  4699999986432  2


Q ss_pred             CCcHHHHHHHhC----C-----C-CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 026376          108 SSNPLLYMMRCF----P-----G-VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH  177 (239)
Q Consensus       108 ~~~~~~~~~~~~----~-----~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~  177 (239)
                      ..++.+++....    .     . ...+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||||+|
T Consensus        80 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~  158 (253)
T 2nq2_C           80 AYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTH-LAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSA  158 (253)
T ss_dssp             CCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGG-GTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTT
T ss_pred             CCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChH-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence            335555443210    0     1 11356788999999974 56788999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376          178 LDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       178 LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                      ||+.++..+.+.+.+.    +.|||++|||++++..+||++++|++|+ + +.|+++++
T Consensus       159 LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~-~~g~~~~~  215 (253)
T 2nq2_C          159 LDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-F-KFGETRNI  215 (253)
T ss_dssp             SCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-E-EEEEHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-E-ecCCHHHH
Confidence            9999999888877543    6799999999999999999999999999 5 56877765

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=100.00  E-value=1.1e-52  Score=370.77  Aligned_cols=200  Identities=26%  Similarity=0.290  Sum_probs=169.3

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce---------EEEEEe
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV---------RIAVFS   98 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~---------~~~~~~   98 (239)
                      ||+++|++++|+ +. +|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.+++..         .++|++
T Consensus         1 ml~~~~l~~~y~-~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~   78 (348)
T 3d31_A            1 MIEIESLSRKWK-NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVY   78 (348)
T ss_dssp             CEEEEEEEEECS-SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEEC
T ss_pred             CEEEEEEEEEEC-CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEe
Confidence            589999999995 45 9999999999999999999999999999999999999999999988742         489999


Q ss_pred             eccCCCCCCCCcHHHHHHH---hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 026376           99 QHHVDGLDLSSNPLLYMMR---CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS  175 (239)
Q Consensus        99 q~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt  175 (239)
                      |++...  ...++.+++..   .......+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||||
T Consensus        79 Q~~~l~--~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~  155 (348)
T 3d31_A           79 QNYSLF--PHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEH-LLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPL  155 (348)
T ss_dssp             TTCCCC--TTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTT-TTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSS
T ss_pred             cCcccC--CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence            986432  23344444321   111112267889999999974 568899999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          176 NHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       176 ~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      ++||+..+..+.+.|++    .+.|+|+||||++++..+||++++|++|++. ..|+++++.
T Consensus       156 s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~-~~g~~~~~~  216 (348)
T 3d31_A          156 SALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLI-QVGKPEEIF  216 (348)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEE-EEECHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence            99999999888777654    3679999999999999999999999999997 568888764

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=100.00  E-value=3.3e-52  Score=370.89  Aligned_cols=202  Identities=24%  Similarity=0.316  Sum_probs=170.2

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------------e
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------V   92 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~   92 (239)
                      +|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.+++.               .
T Consensus         3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r   81 (372)
T 1g29_1            3 GVRLVDVWKVFG-EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR   81 (372)
T ss_dssp             EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred             EEEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHC
Confidence            589999999994 567999999999999999999999999999999999999999999988763               2


Q ss_pred             EEEEEeeccCCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 026376           93 RIAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP  166 (239)
Q Consensus        93 ~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p  166 (239)
                      .++|++|++..  ....++.+++..  ......    .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|
T Consensus        82 ~ig~v~Q~~~l--~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~~~~LSGGq~QRvalArAL~~~P  158 (372)
T 1g29_1           82 DIAMVFQSYAL--YPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTE-LLNRKPRELSGGQRQRVALGRAIVRKP  158 (372)
T ss_dssp             SEEEECSCCCC--CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGG-GTTCCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred             CEEEEeCCCcc--CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-HhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence            48999998643  223344444321  111111    346788999999974 578899999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          167 HIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       167 ~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      ++|||||||++||+..+..+.+.|++    .+.|+|+||||++++..+||++++|++|+++ ..|+++++.+
T Consensus       159 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~-~~g~~~~l~~  229 (372)
T 1g29_1          159 QVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQ-QVGSPDEVYD  229 (372)
T ss_dssp             SEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred             CEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEE-EeCCHHHHHh
Confidence            99999999999999999888777654    3679999999999999999999999999997 5788887654

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=100.00  E-value=1.8e-52  Score=352.68  Aligned_cols=199  Identities=25%  Similarity=0.331  Sum_probs=167.5

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEe
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS   98 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~   98 (239)
                      ||+++|++++|+ +  +|+|+||+|++ |+++|+||||||||||+|+|+|+++|++|+|.+++.         ..++|++
T Consensus         1 ml~~~~l~~~y~-~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~   76 (240)
T 2onk_A            1 MFLKVRAEKRLG-N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVP   76 (240)
T ss_dssp             CCEEEEEEEEET-T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCC
T ss_pred             CEEEEEEEEEeC-C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEc
Confidence            478999999994 3  59999999999 999999999999999999999999999999998763         2589999


Q ss_pred             eccCCCCCCCCcHHHHHHHhCC--C--CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 026376           99 QHHVDGLDLSSNPLLYMMRCFP--G--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP  174 (239)
Q Consensus        99 q~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEP  174 (239)
                      |++..  ....+..+++.....  .  ...+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||||||
T Consensus        77 q~~~l--~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEP  153 (240)
T 2onk_A           77 QDYAL--FPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAH-LLDRKPARLSGGERQRVALARALVIQPRLLLLDEP  153 (240)
T ss_dssp             SSCCC--CTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTT-TTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEEST
T ss_pred             CCCcc--CCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHH-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            98632  223355555432111  1  12356788999999974 56788999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          175 SNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       175 t~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |+|||+.++..+++.+.+.    +.|||++|||++++..+||++++|++|+++ ..|+++++.+
T Consensus       154 ts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~  216 (240)
T 2onk_A          154 LSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIV-EKGKLKELFS  216 (240)
T ss_dssp             TSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHh
Confidence            9999999999888877543    679999999999999999999999999997 5788887643

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=100.00  E-value=2.7e-52  Score=371.01  Aligned_cols=202  Identities=21%  Similarity=0.293  Sum_probs=169.3

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEe
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS   98 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~   98 (239)
                      +|+++|++++|+ +..+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.+++.         ..++|+|
T Consensus        11 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~   89 (372)
T 1v43_A           11 EVKLENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF   89 (372)
T ss_dssp             CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred             eEEEEEEEEEEC-CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEe
Confidence            599999999994 567999999999999999999999999999999999999999999998763         2599999


Q ss_pred             eccCCCCCCCCcHHHHHHHhCC--CCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376           99 QHHVDGLDLSSNPLLYMMRCFP--GVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD  172 (239)
Q Consensus        99 q~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD  172 (239)
                      |++..  ....++.+++.....  ...    .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||||
T Consensus        90 Q~~~l--~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD  166 (372)
T 1v43_A           90 QSYAV--WPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE-LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMD  166 (372)
T ss_dssp             C--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGG-GTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEE
T ss_pred             cCccc--CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            98642  233456665542211  112    346788999999974 678899999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          173 EPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       173 EPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |||++||+..+..+.+.|++    .+.|+|+||||++++..+||++++|++|+++ ..|+++++..
T Consensus       167 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~-~~g~~~~l~~  231 (372)
T 1v43_A          167 EPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLL-QIGSPTEVYL  231 (372)
T ss_dssp             STTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred             CCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHh
Confidence            99999999999888777654    3679999999999999999999999999997 5688887754

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=100.00  E-value=5e-52  Score=351.42  Aligned_cols=201  Identities=24%  Similarity=0.423  Sum_probs=166.7

Q ss_pred             eEEEEeeEEEcC-CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEE
Q 026376           28 IISFSDASFGYP-GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA   95 (239)
Q Consensus        28 ~l~~~~l~~~y~-~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~   95 (239)
                      -++++||+++|+ ++..+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.           ..++
T Consensus         7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~   86 (247)
T 2ff7_A            7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG   86 (247)
T ss_dssp             EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred             ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence            489999999994 3457999999999999999999999999999999999999999999998763           2499


Q ss_pred             EEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHhccC
Q 026376           96 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITFKK  165 (239)
Q Consensus        96 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqrv~laral~~~  165 (239)
                      |++|++.. +  ..+..+++.........+++.++++.+++.+..          .++++.+|||||||||+|||||+.+
T Consensus        87 ~v~Q~~~l-~--~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~  163 (247)
T 2ff7_A           87 VVLQDNVL-L--NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN  163 (247)
T ss_dssp             EECSSCCC-T--TSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred             EEeCCCcc-c--cccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcC
Confidence            99998642 2  236666654322223456677788887775321          2345689999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          166 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       166 p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      |++|||||||++||+.++..+++.+++.  +.|||+||||++.+. .||++++|++|+++ +.|+++++.
T Consensus       164 p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~l~  231 (247)
T 2ff7_A          164 PKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKIV-EQGKHKELL  231 (247)
T ss_dssp             CSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEETTEEE-EEECHHHHH
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-EECCHHHHH
Confidence            9999999999999999999988877654  679999999999986 49999999999997 578877764

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=100.00  E-value=6.3e-52  Score=360.23  Aligned_cols=203  Identities=26%  Similarity=0.367  Sum_probs=171.0

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEE
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA   95 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~   95 (239)
                      ..|+++||+|+|+++..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.           ..++
T Consensus        52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~  131 (306)
T 3nh6_A           52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIG  131 (306)
T ss_dssp             CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEE
T ss_pred             CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceE
Confidence            36999999999975667999999999999999999999999999999999999999999999874           2599


Q ss_pred             EEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcc----------cccCCCCCCChHHHHHHHHHHHhccC
Q 026376           96 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITFKK  165 (239)
Q Consensus        96 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkqrv~laral~~~  165 (239)
                      |++|++..   +..+..+++.........+++.++++.+++.+.          ...+.+.+|||||||||+|||||+.+
T Consensus       132 ~v~Q~~~l---f~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~  208 (306)
T 3nh6_A          132 VVPQDTVL---FNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKA  208 (306)
T ss_dssp             EECSSCCC---CSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred             EEecCCcc---CcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhC
Confidence            99998742   234666666533323445667777777666432          22345679999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          166 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       166 p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |+||||||||++||+.+...+.+.|.+.  +.|+|+||||++.+.. ||+|++|++|+++ ..|+++++.+
T Consensus       209 p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv-~~G~~~el~~  277 (306)
T 3nh6_A          209 PGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCIV-ERGRHEALLS  277 (306)
T ss_dssp             CSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEEE-EEECHHHHHH
T ss_pred             CCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence            9999999999999999999998888654  5799999999999986 9999999999997 6799888754

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=100.00  E-value=4.6e-52  Score=355.35  Aligned_cols=205  Identities=21%  Similarity=0.362  Sum_probs=166.3

Q ss_pred             CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC--cCCCceeEEecCce----------
Q 026376           25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE--LQPSSGTVFRSAKV----------   92 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl--~~p~~G~i~~~~~~----------   92 (239)
                      ..++|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.+++..          
T Consensus        17 ~~~~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~   95 (267)
T 2zu0_C           17 GSHMLSIKDLHVSVE-DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRA   95 (267)
T ss_dssp             ---CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHH
T ss_pred             CCceEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHh
Confidence            345899999999994 56799999999999999999999999999999999999  47899999987631          


Q ss_pred             --EEEEEeeccCCCCCCCCcHHHHHHH---------hCCCCc----HHHHHHHHHhcCCCcccccCCCC-CCChHHHHHH
Q 026376           93 --RIAVFSQHHVDGLDLSSNPLLYMMR---------CFPGVP----EQKLRAHLGSFGVTGNLALQPMY-TLSGGQKSRV  156 (239)
Q Consensus        93 --~~~~~~q~~~~~~~~~~~~~~~~~~---------~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkqrv  156 (239)
                        .++|++|++....  ..+...++..         ......    .+++.++++.+++.....++++. +|||||||||
T Consensus        96 ~~~i~~v~Q~~~l~~--~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv  173 (267)
T 2zu0_C           96 GEGIFMAFQYPVEIP--GVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRN  173 (267)
T ss_dssp             HHTEEEECSSCCCCT--TCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHH
T ss_pred             hCCEEEEccCccccc--cccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHH
Confidence              3899999864322  2233222210         111111    24678899999996445677876 5999999999


Q ss_pred             HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhh-cCeEEEEeCCeEEeeCCChhHH
Q 026376          157 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGS-VEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       157 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                      +|||||+.+|++|||||||++||+.++..+++.+++.   +.|||+||||++++..+ ||++++|++|+++ +.|+++++
T Consensus       174 ~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~  252 (267)
T 2zu0_C          174 DILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIV-KSGDFTLV  252 (267)
T ss_dssp             HHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEE-EEECTTHH
T ss_pred             HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEE-EEcCHHHH
Confidence            9999999999999999999999999999999988764   46999999999999886 9999999999997 57888776


Q ss_pred             H
Q 026376          233 K  233 (239)
Q Consensus       233 ~  233 (239)
                      .
T Consensus       253 ~  253 (267)
T 2zu0_C          253 K  253 (267)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=100.00  E-value=3.1e-52  Score=355.46  Aligned_cols=200  Identities=19%  Similarity=0.320  Sum_probs=171.4

Q ss_pred             eEEEEeeEEEcCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------eEEE-
Q 026376           28 IISFSDASFGYPGG---PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------VRIA-   95 (239)
Q Consensus        28 ~l~~~~l~~~y~~~---~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------~~~~-   95 (239)
                      ||+++|++++|+++   +.+|+++||+|+ |++++|+||||||||||+|+|+|++ |++|+|.+++.        ..++ 
T Consensus         1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~   78 (263)
T 2pjz_A            1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST   78 (263)
T ss_dssp             CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred             CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence            58999999999531   569999999999 9999999999999999999999999 99999998873        2589 


Q ss_pred             EEeeccCCCCCCCCcHHHHHHH--hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 026376           96 VFSQHHVDGLDLSSNPLLYMMR--CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE  173 (239)
Q Consensus        96 ~~~q~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDE  173 (239)
                      |++|++..    ..+..+++..  .......+++.++++.+++.....++++.+|||||||||+|||||+.+|++|||||
T Consensus        79 ~v~Q~~~l----~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDE  154 (263)
T 2pjz_A           79 NLPEAYEI----GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDE  154 (263)
T ss_dssp             CCGGGSCT----TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred             EeCCCCcc----CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence            99998743    3344444321  11134467789999999997235678899999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcC-eEEEEeCCeEEeeCCChhHHHH
Q 026376          174 PSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVE-ELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       174 Pt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d-~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      ||++||+.++..+.+.+++...|||+||||++++..+|| ++++|++|+++ ..|+++++.+
T Consensus       155 Pts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~-~~g~~~~l~~  215 (263)
T 2pjz_A          155 PFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQ-GPISVSELLE  215 (263)
T ss_dssp             TTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEE-EEEEHHHHHT
T ss_pred             CccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEE-EecCHHHHHh
Confidence            999999999999999998875599999999999999999 99999999997 6788888753

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=100.00  E-value=4.1e-52  Score=351.12  Aligned_cols=202  Identities=22%  Similarity=0.355  Sum_probs=166.7

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV   96 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~   96 (239)
                      ||+++|++++|+++..+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.           ..++|
T Consensus         1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~   80 (243)
T 1mv5_A            1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF   80 (243)
T ss_dssp             CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred             CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence            4899999999954457999999999999999999999999999999999999999999998763           24899


Q ss_pred             EeeccCCCCCCCCcHHHHHHHh-CCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhccC
Q 026376           97 FSQHHVDGLDLSSNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKK  165 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~~~  165 (239)
                      ++|++.. +  ..+..+++... ......+++.++++.+++.+...          ++++.+|||||||||+|||||+.+
T Consensus        81 v~q~~~l-~--~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~  157 (243)
T 1mv5_A           81 VSQDSAI-M--AGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRN  157 (243)
T ss_dssp             ECCSSCC-C--CEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred             EcCCCcc-c--cccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcC
Confidence            9998642 2  23566655322 12234567888888888864321          235679999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          166 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       166 p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |++|||||||++||+.++..+++.+.+.  +.|||+||||++++. .||++++|++|+++ ..|+++++..
T Consensus       158 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~~  226 (243)
T 1mv5_A          158 PKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQIT-GSGKHNELVA  226 (243)
T ss_dssp             CSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEEC-CCSCHHHHHH
T ss_pred             CCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEEECCEEE-EeCCHHHHHh
Confidence            9999999999999999888877766543  679999999999886 59999999999996 6788887654

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=100.00  E-value=3.8e-51  Score=350.34  Aligned_cols=202  Identities=24%  Similarity=0.398  Sum_probs=165.3

Q ss_pred             CeEEEEeeEEEcCC--CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eE
Q 026376           27 PIISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR   93 (239)
Q Consensus        27 ~~l~~~~l~~~y~~--~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~   93 (239)
                      .+|+++||+++|++  ...+|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.           ..
T Consensus        15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~   94 (271)
T 2ixe_A           15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ   94 (271)
T ss_dssp             CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred             ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence            47999999999964  156999999999999999999999999999999999999999999998873           24


Q ss_pred             EEEEeeccCCCCCCCCcHHHHHHHhCCCCcH-HH---------HHHHHHhc--CCCcccccCCCCCCChHHHHHHHHHHH
Q 026376           94 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPE-QK---------LRAHLGSF--GVTGNLALQPMYTLSGGQKSRVAFAKI  161 (239)
Q Consensus        94 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~lara  161 (239)
                      ++|++|++.. +  ..+..+++......... .+         +.++++.+  ++.. ..++++.+|||||||||+||||
T Consensus        95 i~~v~Q~~~l-~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~-~~~~~~~~LSgGq~QRv~lAra  170 (271)
T 2ixe_A           95 VAAVGQEPLL-F--GRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDT-EVGETGNQLSGGQRQAVALARA  170 (271)
T ss_dssp             EEEECSSCCC-C--SSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGS-BCCGGGTTSCHHHHHHHHHHHH
T ss_pred             EEEEecCCcc-c--cccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhh-hhcCCcCCCCHHHHHHHHHHHH
Confidence            9999998742 2  23666665432111111 11         23456666  5643 4567889999999999999999


Q ss_pred             hccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          162 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       162 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |+.+|++|||||||++||+.++..+++.|.+.    +.|||+||||++++.. ||++++|++|+++ ..|+++++..
T Consensus       171 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~-~~g~~~~l~~  245 (271)
T 2ixe_A          171 LIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVC-EQGTHLQLME  245 (271)
T ss_dssp             HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEE-EEECHHHHHH
T ss_pred             HhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEE-EECCHHHHHh
Confidence            99999999999999999999999999988764    4699999999999875 9999999999997 5788877643

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=100.00  E-value=7.9e-52  Score=350.79  Aligned_cols=200  Identities=21%  Similarity=0.299  Sum_probs=160.7

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC--cCCCceeEEecCce------------E
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE--LQPSSGTVFRSAKV------------R   93 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl--~~p~~G~i~~~~~~------------~   93 (239)
                      +|+++||+++|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+  ++|++|+|.+++..            .
T Consensus         3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~   81 (250)
T 2d2e_A            3 QLEIRDLWASID-GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG   81 (250)
T ss_dssp             EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred             eEEEEeEEEEEC-CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence            699999999995 46799999999999999999999999999999999998  88999999987632            2


Q ss_pred             EEEEeeccCCCCCCCCcHHHHHHH-----hCCCC----cHHHHHHHHHhcCCCcccccCCCCC-CChHHHHHHHHHHHhc
Q 026376           94 IAVFSQHHVDGLDLSSNPLLYMMR-----CFPGV----PEQKLRAHLGSFGVTGNLALQPMYT-LSGGQKSRVAFAKITF  163 (239)
Q Consensus        94 ~~~~~q~~~~~~~~~~~~~~~~~~-----~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~-LSgGqkqrv~laral~  163 (239)
                      ++|++|++....  ..+..+++..     .....    ..+++.++++.+++.....++++.+ |||||||||+|||||+
T Consensus        82 i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~  159 (250)
T 2d2e_A           82 LFLAFQYPVEVP--GVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLV  159 (250)
T ss_dssp             BCCCCCCCC-CC--SCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHH
T ss_pred             EEEeccCCcccc--CCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHH
Confidence            789999864322  2233332211     11111    1346788999999953456788898 9999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhh-cCeEEEEeCCeEEeeCCChhH
Q 026376          164 KKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGS-VEELWVVSEGKATPFHGTFHD  231 (239)
Q Consensus       164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~-~d~i~~l~~G~i~~~~g~~~~  231 (239)
                      .+|++|||||||++||+.++..+++.+++.   +.|||+||||++++..+ ||++++|++|+++ ..|+++.
T Consensus       160 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~-~~g~~~~  230 (250)
T 2d2e_A          160 LEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVV-ATGGPEL  230 (250)
T ss_dssp             HCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEE-EEESHHH
T ss_pred             cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEE-EEeCHHH
Confidence            999999999999999999999998888654   56999999999999888 5999999999997 5687763

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=100.00  E-value=1.6e-50  Score=338.64  Aligned_cols=200  Identities=24%  Similarity=0.416  Sum_probs=161.4

Q ss_pred             CeEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCC
Q 026376           27 PIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL  105 (239)
Q Consensus        27 ~~l~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~  105 (239)
                      .+|+++|++++|++ ++.+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++  .++|++|++.. +
T Consensus         5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--~i~~v~q~~~~-~   81 (229)
T 2pze_A            5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQFSWI-M   81 (229)
T ss_dssp             EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS--CEEEECSSCCC-C
T ss_pred             ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC--EEEEEecCCcc-c
Confidence            37999999999952 45799999999999999999999999999999999999999999999987  58999998742 2


Q ss_pred             CCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcc----------cccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 026376          106 DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS  175 (239)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt  175 (239)
                        ..+..+++.... .....+..++++.+++.+.          ..++++.+|||||||||+|||||+.+|++|||||||
T Consensus        82 --~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPt  158 (229)
T 2pze_A           82 --PGTIKENIIFGV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF  158 (229)
T ss_dssp             --SBCHHHHHHTTS-CCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred             --CCCHHHHhhccC-CcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence              236666654321 1223334445555554321          122356899999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHH-hhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          176 NHLDLDAVEALIQGL-VLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       176 ~~LD~~~~~~l~~~l-~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      ++||+.++..+++.+ .+.  +.|||+||||++++. .||++++|++|+++ ..|+++++.+
T Consensus       159 s~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~~  218 (229)
T 2pze_A          159 GYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSY-FYGTFSELQN  218 (229)
T ss_dssp             TTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEETTEEE-EEECHHHHHT
T ss_pred             cCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence            999999999998864 332  569999999999986 59999999999997 5788887643

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=100.00  E-value=6.8e-51  Score=342.48  Aligned_cols=199  Identities=22%  Similarity=0.348  Sum_probs=161.0

Q ss_pred             eEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCC
Q 026376           28 IISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD  106 (239)
Q Consensus        28 ~l~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~  106 (239)
                      +|+++|++++|++ +..+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++  .++|++|++.  + 
T Consensus         3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~--~-   77 (237)
T 2cbz_A            3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG--SVAYVPQQAW--I-   77 (237)
T ss_dssp             CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS--CEEEECSSCC--C-
T ss_pred             eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC--EEEEEcCCCc--C-
Confidence            5899999999953 35789999999999999999999999999999999999999999999988  4999999864  2 


Q ss_pred             CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCC------c----ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 026376          107 LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVT------G----NLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN  176 (239)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~----~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~  176 (239)
                      ...+..+++.... ....+...++++.+++.      .    ...++++.+|||||||||+|||||+.+|++|||||||+
T Consensus        78 ~~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts  156 (237)
T 2cbz_A           78 QNDSLRENILFGC-QLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLS  156 (237)
T ss_dssp             CSEEHHHHHHTTS-CCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred             CCcCHHHHhhCcc-ccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence            2346666654321 11122233333333321      1    12357789999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHh---h--cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          177 HLDLDAVEALIQGLV---L--FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       177 ~LD~~~~~~l~~~l~---~--~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      +||+.++..+++.+.   +  .+.|||+||||++++. .||++++|++|+++ ..|+++++..
T Consensus       157 ~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~~  217 (237)
T 2cbz_A          157 AVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMSGGKIS-EMGSYQELLA  217 (237)
T ss_dssp             TSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEETTEEE-EEECHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEeCCEEE-EeCCHHHHhh
Confidence            999999999998883   2  2569999999999886 69999999999997 5788887643

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=100.00  E-value=5.6e-51  Score=345.23  Aligned_cols=196  Identities=24%  Similarity=0.332  Sum_probs=167.0

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce-----------EEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------RIAV   96 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------~~~~   96 (239)
                      +|+++|++++     .+|+|+||+|++||+++|+||||||||||+|+|+|+++|+ |+|.+++..           .++|
T Consensus         4 ~l~~~~l~~~-----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~   77 (249)
T 2qi9_C            4 VMQLQDVAES-----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAY   77 (249)
T ss_dssp             EEEEEEEEET-----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEE
T ss_pred             EEEEEceEEE-----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEE
Confidence            7999999986     4899999999999999999999999999999999999999 999988742           4999


Q ss_pred             EeeccCCCCCCCCcHHHHHHHhC-CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC-------E
Q 026376           97 FSQHHVDGLDLSSNPLLYMMRCF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH-------I  168 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~-------l  168 (239)
                      ++|++..  ....+..+++.... .....+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|+       +
T Consensus        78 v~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~l  154 (249)
T 2qi9_C           78 LSQQQTP--PFATPVWHYLTLHQHDKTRTELLNDVAGALALDD-KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQL  154 (249)
T ss_dssp             ECSCCCC--CTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGG-GTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCE
T ss_pred             ECCCCcc--CCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeE
Confidence            9998642  22345555554211 1123667889999999964 5678899999999999999999999999       9


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          169 ILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       169 lllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      |||||||+|||+.++..+.+.+++.   +.|||++|||++++..+||++++|++|+++ +.|+++++.
T Consensus       155 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~  221 (249)
T 2qi9_C          155 LLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKML-ASGRREEVL  221 (249)
T ss_dssp             EEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEE-EEEEHHHHS
T ss_pred             EEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence            9999999999999999888877643   679999999999999999999999999997 568877663

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=100.00  E-value=2e-50  Score=343.93  Aligned_cols=202  Identities=26%  Similarity=0.359  Sum_probs=165.9

Q ss_pred             CeEEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eE
Q 026376           27 PIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR   93 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~   93 (239)
                      ++|+++||+++|++.  ..+|+++||+|++|++++|+||||||||||+|+|+|+++| +|+|.+++.           ..
T Consensus        16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~   94 (260)
T 2ghi_A           16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI   94 (260)
T ss_dssp             CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred             CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence            469999999999643  3689999999999999999999999999999999999987 899998773           24


Q ss_pred             EEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHhc
Q 026376           94 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITF  163 (239)
Q Consensus        94 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqrv~laral~  163 (239)
                      ++|++|++.. +  ..+..+++.........+++.++++.+++.+..          .++++.+|||||||||+|||||+
T Consensus        95 i~~v~Q~~~l-~--~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~  171 (260)
T 2ghi_A           95 IGIVPQDTIL-F--NETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL  171 (260)
T ss_dssp             EEEECSSCCC-C--SEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCcc-c--ccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHH
Confidence            9999998742 2  236666654322123455677777777764321          23567899999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          164 KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      .+|++|||||||++||+.++..+++.+.+.  +.|||+||||++++. .||++++|++|+++ ..|+++++..
T Consensus       172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~  242 (260)
T 2ghi_A          172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SAESIILLNKGKIV-EKGTHKDLLK  242 (260)
T ss_dssp             HCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TCSEEEEEETTEEE-EEECHHHHHH
T ss_pred             cCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence            999999999999999999999888877654  569999999999986 59999999999997 5788877643

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=100.00  E-value=5.4e-51  Score=337.98  Aligned_cols=190  Identities=23%  Similarity=0.349  Sum_probs=158.1

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce------EEEEEee
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------RIAVFSQ   99 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------~~~~~~q   99 (239)
                      ..+|+++|++++|+ + .+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++..      .++|++|
T Consensus         8 ~~~l~~~~ls~~y~-~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q   85 (214)
T 1sgw_A            8 GSKLEIRDLSVGYD-K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE   85 (214)
T ss_dssp             -CEEEEEEEEEESS-S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECS
T ss_pred             CceEEEEEEEEEeC-C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeC
Confidence            45899999999995 4 79999999999999999999999999999999999999999999998743      5999999


Q ss_pred             ccCCCCCCCCcHHHHHH---HhCC-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 026376          100 HHVDGLDLSSNPLLYMM---RCFP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS  175 (239)
Q Consensus       100 ~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt  175 (239)
                      ++...  ...++.+++.   .... ....+++.++++.+++.. . ++++.+||||||||++|||||+.+|++|||||||
T Consensus        86 ~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~-~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPt  161 (214)
T 1sgw_A           86 EIIVP--RKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD-L-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV  161 (214)
T ss_dssp             SCCCC--TTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC-T-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT
T ss_pred             CCcCC--CCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCc-C-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence            86432  2234444432   1111 223567889999999975 4 7889999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCeE
Q 026376          176 NHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGKA  222 (239)
Q Consensus       176 ~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~i  222 (239)
                      ++||+.++..+++.+.+.   +.|||++|||++++..+||+++++ .|++
T Consensus       162 s~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~  210 (214)
T 1sgw_A          162 VAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI  210 (214)
T ss_dssp             TTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred             cCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence            999999998888777543   569999999999999999998855 4555

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.3e-49  Score=354.23  Aligned_cols=201  Identities=21%  Similarity=0.286  Sum_probs=171.2

Q ss_pred             CCeEEEEeeEEEcC-CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eE
Q 026376           26 PPIISFSDASFGYP-GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR   93 (239)
Q Consensus        26 ~~~l~~~~l~~~y~-~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~   93 (239)
                      ...|+++||+|+|+ ++..+|++|||+|++||+++|+||||||||||||+|+|+++ ++|+|.+++.           ..
T Consensus        17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~   95 (390)
T 3gd7_A           17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKA   95 (390)
T ss_dssp             SCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHT
T ss_pred             CCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCC
Confidence            34699999999995 34579999999999999999999999999999999999998 9999998873           35


Q ss_pred             EEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCC-----------CChHHHHHHHHHHHh
Q 026376           94 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYT-----------LSGGQKSRVAFAKIT  162 (239)
Q Consensus        94 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----------LSgGqkqrv~laral  162 (239)
                      ++|+||++...   ..+...++.. ......+++.++++.+++.+ ..++++.+           |||||||||+|||||
T Consensus        96 ig~v~Q~~~lf---~~tv~enl~~-~~~~~~~~v~~~l~~~~L~~-~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL  170 (390)
T 3gd7_A           96 FGVIPQKVFIF---SGTFRKNLDP-NAAHSDQEIWKVADEVGLRS-VIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSV  170 (390)
T ss_dssp             EEEESCCCCCC---SEEHHHHHCT-TCCSCHHHHHHHHHHTTCHH-HHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHH
T ss_pred             EEEEcCCcccC---ccCHHHHhhh-ccccCHHHHHHHHHHhCCHH-HHhhcccccccccccccccCCHHHHHHHHHHHHH
Confidence            99999987432   2466666532 22345678889999999964 55677777           999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          163 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       163 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      +.+|++|||||||++||+..+..+.+.|++.  +.|+|+||||++.+. .||||++|++|+++ ..|+++++.+
T Consensus       171 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~-~aDri~vl~~G~i~-~~g~~~el~~  242 (390)
T 3gd7_A          171 LSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAML-ECDQFLVIEENKVR-QYDSILELYH  242 (390)
T ss_dssp             HTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGT-TCSEEEEEETTEEE-EESSHHHHHH
T ss_pred             hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence            9999999999999999999999999988764  469999999997665 69999999999997 5788888754

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=1.6e-48  Score=366.95  Aligned_cols=203  Identities=19%  Similarity=0.326  Sum_probs=170.9

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEE
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA   95 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~   95 (239)
                      ..|+++|++|+|+++..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+++.           ..++
T Consensus       353 ~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~  432 (598)
T 3qf4_B          353 GEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIG  432 (598)
T ss_dssp             CCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEE
T ss_pred             CeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceE
Confidence            35999999999975567999999999999999999999999999999999999999999999873           2599


Q ss_pred             EEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccC----------CCCCCChHHHHHHHHHHHhccC
Q 026376           96 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQ----------PMYTLSGGQKSRVAFAKITFKK  165 (239)
Q Consensus        96 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgGqkqrv~laral~~~  165 (239)
                      |++|++..   +..+..+++....+..+.+++.++++.+++.+.....          ...+||||||||++|||||+.+
T Consensus       433 ~v~Q~~~l---f~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~  509 (598)
T 3qf4_B          433 IVLQDTIL---FSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLAN  509 (598)
T ss_dssp             EECTTCCC---CSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTC
T ss_pred             EEeCCCcc---ccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence            99999742   2346667665333334556778888887775432221          1268999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          166 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       166 p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |++|||||||++||+.+...+.+.+.+.  +.|+|+||||++.+.. ||+|++|++|+++ ..|+++++.+
T Consensus       510 p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~-~~g~~~~l~~  578 (598)
T 3qf4_B          510 PKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEIV-EMGKHDELIQ  578 (598)
T ss_dssp             CSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSEE-ECSCHHHHHH
T ss_pred             CCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence            9999999999999999999988877653  6799999999999875 9999999999997 6899988754

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=100.00  E-value=9.3e-48  Score=360.86  Aligned_cols=203  Identities=23%  Similarity=0.319  Sum_probs=170.4

Q ss_pred             CeEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376           27 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI   94 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~   94 (239)
                      .+++++|++|+|+++ +.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.+++.           ..+
T Consensus       340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i  419 (582)
T 3b5x_A          340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF  419 (582)
T ss_pred             CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence            479999999999643 57999999999999999999999999999999999999999999998873           359


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHhC-CCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhc
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRCF-PGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITF  163 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~  163 (239)
                      +|++|++...   ..+..+++.... +..+.+++.++++.+++.+...          .++..+||||||||++|||||+
T Consensus       420 ~~v~Q~~~l~---~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~  496 (582)
T 3b5x_A          420 ALVSQNVHLF---NDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALL  496 (582)
T ss_pred             EEEcCCCccc---cccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHH
Confidence            9999987432   235566554322 2345677888888888754221          2345799999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          164 KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      .+|++|||||||++||+.+...+.+.+.+.  +.|+|+||||++.+. .||++++|++|+++ ..|+++++.+
T Consensus       497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~  567 (582)
T 3b5x_A          497 RDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEII-ERGRHADLLA  567 (582)
T ss_pred             cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence            999999999999999999999998888764  579999999999987 69999999999997 6799887653

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=100.00  E-value=5.9e-48  Score=361.94  Aligned_cols=203  Identities=24%  Similarity=0.380  Sum_probs=170.2

Q ss_pred             CeEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376           27 PIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI   94 (239)
Q Consensus        27 ~~l~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~   94 (239)
                      ..++++|++|+|++ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+++.           ..+
T Consensus       338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i  417 (578)
T 4a82_A          338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI  417 (578)
T ss_dssp             CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred             CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence            36999999999964 356999999999999999999999999999999999999999999999874           259


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhcc
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFK  164 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~~  164 (239)
                      +|++|++..   +..+..+++....+....+++.++++..++.+...          .++..+||||||||++|||||+.
T Consensus       418 ~~v~Q~~~l---~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~  494 (578)
T 4a82_A          418 GLVQQDNIL---FSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN  494 (578)
T ss_dssp             EEECSSCCC---CSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCcc---CcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHc
Confidence            999998742   23467777654333445667778887777643221          23346899999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      +|++|||||||++||+.+...+.+.+.+.  ++|+|+||||++.+.. ||++++|++|+++ ..|+++++.+
T Consensus       495 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~-~~g~~~el~~  564 (578)
T 4a82_A          495 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIENGHIV-ETGTHRELIA  564 (578)
T ss_dssp             CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEEEEEETTEEE-EEECHHHHHH
T ss_pred             CCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence            99999999999999999998888877653  5699999999999864 9999999999997 6799988754

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=100.00  E-value=7.7e-48  Score=361.42  Aligned_cols=203  Identities=24%  Similarity=0.335  Sum_probs=171.4

Q ss_pred             CeEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376           27 PIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI   94 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~   94 (239)
                      .+++++|++++|+++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.           ..+
T Consensus       340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i  419 (582)
T 3b60_A          340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV  419 (582)
T ss_dssp             CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred             CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence            469999999999643 57999999999999999999999999999999999999999999998873           259


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHhC-CCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHhc
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRCF-PGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITF  163 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqrv~laral~  163 (239)
                      +|++|++..   +..+..+++.... +..+.+++.++++.+++.+..          ..++..+||||||||++|||||+
T Consensus       420 ~~v~Q~~~l---~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~  496 (582)
T 3b60_A          420 ALVSQNVHL---FNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL  496 (582)
T ss_dssp             EEECSSCCC---CSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred             eEEccCCcC---CCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence            999998743   2346666664322 234567788899888875322          22356899999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          164 KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      ++|++|||||||++||+.+...+.+.+.+.  +.|+|+||||++.+. .||++++|++|+++ ..|+++++.+
T Consensus       497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~  567 (582)
T 3b60_A          497 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIV-ERGTHSELLA  567 (582)
T ss_dssp             HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEE-EEECHHHHHH
T ss_pred             hCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEE-EecCHHHHHH
Confidence            999999999999999999999888877653  679999999999886 69999999999997 5799888754

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=100.00  E-value=1.1e-47  Score=331.56  Aligned_cols=197  Identities=25%  Similarity=0.429  Sum_probs=148.0

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCC
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGL  105 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~  105 (239)
                      .++|+++|+++.+   ..+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++  .++|++|++.. +
T Consensus        38 ~~~l~~~~l~~~~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~l-~  111 (290)
T 2bbs_A           38 DDSLSFSNFSLLG---TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQNSWI-M  111 (290)
T ss_dssp             ------------C---CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS--CEEEECSSCCC-C
T ss_pred             CceEEEEEEEEcC---ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC--EEEEEeCCCcc-C
Confidence            3479999999864   4689999999999999999999999999999999999999999999987  58999998642 2


Q ss_pred             CCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCccc----------ccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 026376          106 DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS  175 (239)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt  175 (239)
                      .  .+..+++. .. ......+.++++.+++.+..          .++++.+||||||||++|||||+.+|++|||||||
T Consensus       112 ~--~tv~enl~-~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPt  187 (290)
T 2bbs_A          112 P--GTIKENII-GV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF  187 (290)
T ss_dssp             S--SBHHHHHH-TT-CCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred             c--ccHHHHhh-Cc-ccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCc
Confidence            2  36666665 22 12233344555555553211          12345899999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHH-hhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          176 NHLDLDAVEALIQGL-VLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       176 ~~LD~~~~~~l~~~l-~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      ++||+.++..+++.+ .+.  +.|||+||||++++. .||++++|++|+++ ..|+++++..
T Consensus       188 s~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~  247 (290)
T 2bbs_A          188 GYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSY-FYGTFSELQN  247 (290)
T ss_dssp             TTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTEEE-EEECHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCeEE-EeCCHHHHhh
Confidence            999999999998864 332  569999999999986 59999999999997 6788887643

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=4.2e-47  Score=356.61  Aligned_cols=204  Identities=22%  Similarity=0.319  Sum_probs=170.2

Q ss_pred             CeEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376           27 PIISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI   94 (239)
Q Consensus        27 ~~l~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~   94 (239)
                      ..++++|++|+|++ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.           ..+
T Consensus       340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i  419 (587)
T 3qf4_A          340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHI  419 (587)
T ss_dssp             CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHE
T ss_pred             CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhhe
Confidence            46999999999964 357999999999999999999999999999999999999999999999873           359


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCc----------ccccCCCCCCChHHHHHHHHHHHhcc
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG----------NLALQPMYTLSGGQKSRVAFAKITFK  164 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkqrv~laral~~  164 (239)
                      +|++|++..   +..+..+++....+....+++.++++..++.+          ....+++.+||||||||++|||||++
T Consensus       420 ~~v~Q~~~l---f~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~  496 (587)
T 3qf4_A          420 SAVPQETVL---FSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVK  496 (587)
T ss_dssp             EEECSSCCC---CSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHT
T ss_pred             EEECCCCcC---cCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHc
Confidence            999998742   23466666643323344566666666655432          12345678999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  235 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  235 (239)
                      +|++|||||||++||+.+...+.+.+++.  +.|+|+||||++.+. .||+|++|++|+++ ..|+++++.+.
T Consensus       497 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~-~~g~~~el~~~  567 (587)
T 3qf4_A          497 KPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKVA-GFGTHKELLEH  567 (587)
T ss_dssp             CCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEEE-EEECHHHHHHH
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEEE-EECCHHHHHhC
Confidence            99999999999999999999998888754  579999999999986 79999999999997 67999887643

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=100.00  E-value=8.9e-46  Score=344.14  Aligned_cols=202  Identities=24%  Similarity=0.296  Sum_probs=167.2

Q ss_pred             CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCC
Q 026376           25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG  104 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~  104 (239)
                      ++++++++|+++.|+ + ..|+++||+|.+||+++|+||||||||||+|+|+|+++|++|+|.+  ...++|++|++...
T Consensus       284 ~~~~l~~~~l~~~~~-~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~--~~~i~~v~Q~~~~~  359 (538)
T 1yqt_A          284 RETLVTYPRLVKDYG-S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW--DLTVAYKPQYIKAD  359 (538)
T ss_dssp             CCEEEEECCEEEEET-T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC--CCCEEEECSSCCCC
T ss_pred             CCeEEEEeeEEEEEC-C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE--CceEEEEecCCcCC
Confidence            356899999999994 3 4789999999999999999999999999999999999999999986  34699999986432


Q ss_pred             CCCCCcHHHHHHHh--CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH
Q 026376          105 LDLSSNPLLYMMRC--FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA  182 (239)
Q Consensus       105 ~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~  182 (239)
                        ...++...+...  ......+.+.++++.+++. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.+
T Consensus       360 --~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~  436 (538)
T 1yqt_A          360 --YEGTVYELLSKIDASKLNSNFYKTELLKPLGII-DLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ  436 (538)
T ss_dssp             --CSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCG-GGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHH
T ss_pred             --CCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHH
Confidence              223333332211  0001345678899999996 46788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeC--CeEEeeCCChhHHHH
Q 026376          183 VEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSE--GKATPFHGTFHDYKK  234 (239)
Q Consensus       183 ~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~--G~i~~~~g~~~~~~~  234 (239)
                      +..+.+.+++    .+.|||+||||++++..+|||+++|++  |++. ..|+++++..
T Consensus       437 ~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~-~~g~~~~~~~  493 (538)
T 1yqt_A          437 RLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYG-RALPPMGMRE  493 (538)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEE-EECCCEEHHH
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEe-ecCCHHHHHh
Confidence            9988887764    377999999999999999999999986  6665 5688877654

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=100.00  E-value=1.6e-45  Score=346.11  Aligned_cols=202  Identities=24%  Similarity=0.305  Sum_probs=166.9

Q ss_pred             CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCC
Q 026376           25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG  104 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~  104 (239)
                      +.++++++|+++.|+ + ..|+++||+|.+||+++|+||||||||||+|+|+|+++|++|+|.+  ...++|++|++...
T Consensus       354 ~~~~l~~~~l~~~~~-~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~--~~~i~~v~Q~~~~~  429 (607)
T 3bk7_A          354 RETLVEYPRLVKDYG-S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW--DLTVAYKPQYIKAE  429 (607)
T ss_dssp             CCEEEEECCEEEECS-S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC--CCCEEEECSSCCCC
T ss_pred             CceEEEEeceEEEec-c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE--eeEEEEEecCccCC
Confidence            346899999999994 3 4789999999999999999999999999999999999999999976  34699999986432


Q ss_pred             CCCCCcHHHHHHHh-CCC-CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH
Q 026376          105 LDLSSNPLLYMMRC-FPG-VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA  182 (239)
Q Consensus       105 ~~~~~~~~~~~~~~-~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~  182 (239)
                      .  ..++...+... ... ...+.+.++++.+++. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.+
T Consensus       430 ~--~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~  506 (607)
T 3bk7_A          430 Y--EGTVYELLSKIDSSKLNSNFYKTELLKPLGII-DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ  506 (607)
T ss_dssp             C--SSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT-TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHH
T ss_pred             C--CCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHH
Confidence            2  23333332211 000 1245678899999997 46788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeC--CeEEeeCCChhHHHH
Q 026376          183 VEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSE--GKATPFHGTFHDYKK  234 (239)
Q Consensus       183 ~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~--G~i~~~~g~~~~~~~  234 (239)
                      +..+.+.++++    +.|||+||||++++..+|||+++|++  |++. ..|+++++..
T Consensus       507 ~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~-~~g~p~~~~~  563 (607)
T 3bk7_A          507 RLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHG-RALPPMGMRE  563 (607)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEE-EECCCEEHHH
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEE-ecCCHHHHHh
Confidence            99888877643    67999999999999999999999986  6665 5688877654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=100.00  E-value=2.1e-45  Score=357.50  Aligned_cols=202  Identities=35%  Similarity=0.665  Sum_probs=165.9

Q ss_pred             CCCeEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCC
Q 026376           25 GPPIISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVD  103 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~  103 (239)
                      ++++|+++|++++|+++ +.+|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|++++..+++|++|+...
T Consensus       668 ~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~~~I~yv~Q~~~~  747 (986)
T 2iw3_A          668 QKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFA  747 (986)
T ss_dssp             TSEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTTCCEEEECHHHHH
T ss_pred             CCceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCccceEeeccchhh
Confidence            35689999999999642 56899999999999999999999999999999999999999999999877789999987410


Q ss_pred             C--CCCCCcHHHHHH-----------------------------------------------------------------
Q 026376          104 G--LDLSSNPLLYMM-----------------------------------------------------------------  116 (239)
Q Consensus       104 ~--~~~~~~~~~~~~-----------------------------------------------------------------  116 (239)
                      .  .....++..++.                                                                 
T Consensus       748 ~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi  827 (986)
T 2iw3_A          748 HIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENI  827 (986)
T ss_dssp             HGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEST
T ss_pred             hhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhh
Confidence            0  000000000000                                                                 


Q ss_pred             ------------------------------------------HhCCCCcHHHHHHHHHhcCCCccc-ccCCCCCCChHHH
Q 026376          117 ------------------------------------------RCFPGVPEQKLRAHLGSFGVTGNL-ALQPMYTLSGGQK  153 (239)
Q Consensus       117 ------------------------------------------~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~LSgGqk  153 (239)
                                                                ........++++++++.+|+.... .++++.+||||||
T Consensus       828 ~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQk  907 (986)
T 2iw3_A          828 GMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQK  907 (986)
T ss_dssp             TSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHHHH
T ss_pred             hcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHHHH
Confidence                                                      001122346788899999997543 5788999999999


Q ss_pred             HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCC
Q 026376          154 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHG  227 (239)
Q Consensus       154 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g  227 (239)
                      |||+|||||+.+|++|||||||+|||+.+...+.+.++++++|||+||||++++..+||++++|++|+++ ..|
T Consensus       908 QRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G~Iv-~~G  980 (986)
T 2iw3_A          908 VKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMT-PSG  980 (986)
T ss_dssp             HHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTTBCC-C--
T ss_pred             HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EeC
Confidence            9999999999999999999999999999999999999988889999999999999999999999999986 444

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=1.1e-44  Score=365.69  Aligned_cols=204  Identities=25%  Similarity=0.371  Sum_probs=173.3

Q ss_pred             CeEEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eE
Q 026376           27 PIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR   93 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~   93 (239)
                      ..|+++||+|+|+++  .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+++.           .+
T Consensus      1075 g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~ 1154 (1321)
T 4f4c_A         1075 GKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQ 1154 (1321)
T ss_dssp             CCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTT
T ss_pred             CeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhh
Confidence            359999999999743  36999999999999999999999999999999999999999999999874           36


Q ss_pred             EEEEeeccCCCCCCCCcHHHHHHHh--CCCCcHHHHHHHHHhcCCCccccc----------CCCCCCChHHHHHHHHHHH
Q 026376           94 IAVFSQHHVDGLDLSSNPLLYMMRC--FPGVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKI  161 (239)
Q Consensus        94 ~~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqrv~lara  161 (239)
                      ++++||++..   +..+..+++...  ....+.+++.++++..++.+....          ....+||||||||++||||
T Consensus      1155 i~~V~Qdp~L---F~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARA 1231 (1321)
T 4f4c_A         1155 IAIVSQEPTL---FDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARA 1231 (1321)
T ss_dssp             EEEECSSCCC---CSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHH
T ss_pred             eEEECCCCEe---eCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHH
Confidence            9999999853   345677776422  124567889999998887543221          2346799999999999999


Q ss_pred             hccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376          162 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  235 (239)
Q Consensus       162 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  235 (239)
                      |+++|+|||||||||+||+++...+.+.|++.  ++|+|+|+|+++.+. .||+|++|++|+|+ ..|+++++.+.
T Consensus      1232 llr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~-~aD~I~Vld~G~Iv-E~Gth~eLl~~ 1305 (1321)
T 4f4c_A         1232 LVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVM-NADCIAVVSNGTII-EKGTHTQLMSE 1305 (1321)
T ss_dssp             HHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTT-TCSEEEEESSSSEE-EEECHHHHHHC
T ss_pred             HHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHH-hCCEEEEEECCEEE-EECCHHHHHhC
Confidence            99999999999999999999999999999865  579999999999987 49999999999998 57999998653

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=100.00  E-value=3.7e-44  Score=332.86  Aligned_cols=189  Identities=17%  Similarity=0.223  Sum_probs=158.6

Q ss_pred             CCCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCC
Q 026376           25 GPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDG  104 (239)
Q Consensus        25 ~~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~  104 (239)
                      ..+.++++|+++.|+ + ..|+.+||+|++||+++|+||||||||||+|+|+|+++|++|+|...+ ..++|++|+....
T Consensus       266 ~~~~l~~~~l~~~~~-~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~-~~i~~~~q~~~~~  342 (538)
T 3ozx_A          266 LKTKMKWTKIIKKLG-D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK-QILSYKPQRIFPN  342 (538)
T ss_dssp             CCEEEEECCEEEEET-T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC-CCEEEECSSCCCC
T ss_pred             ccceEEEcceEEEEC-C-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-eeeEeechhcccc
Confidence            346799999999994 3 568889999999999999999999999999999999999999998764 4689999986432


Q ss_pred             CCCCCcHHHHHHHhCC---CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 026376          105 LDLSSNPLLYMMRCFP---GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD  181 (239)
Q Consensus       105 ~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~  181 (239)
                        ...++..++.....   ......+.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||||+|||+.
T Consensus       343 --~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~  419 (538)
T 3ozx_A          343 --YDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHR-LLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVE  419 (538)
T ss_dssp             --CSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGG-CTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHH
T ss_pred             --cCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHH-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHH
Confidence              23344444432211   123345788899999974 678899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeC
Q 026376          182 AVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSE  219 (239)
Q Consensus       182 ~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~  219 (239)
                      ++..+.+.+++    .+.|||+||||++++..+||||++|++
T Consensus       420 ~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~  461 (538)
T 3ozx_A          420 ERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKG  461 (538)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence            99888777754    367999999999999999999999986

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=3.3e-44  Score=362.22  Aligned_cols=202  Identities=22%  Similarity=0.312  Sum_probs=173.6

Q ss_pred             eEEEEeeEEEcCC--CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376           28 IISFSDASFGYPG--GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI   94 (239)
Q Consensus        28 ~l~~~~l~~~y~~--~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~   94 (239)
                      .|+++||+|+|++  +.++|+|+||+|++|+.++|+||+|||||||+++|.|+++|++|+|.+++.           ..+
T Consensus       415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i  494 (1321)
T 4f4c_A          415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNV  494 (1321)
T ss_dssp             CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred             cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcc
Confidence            5999999999974  357999999999999999999999999999999999999999999999874           369


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhcc
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFK  164 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~~  164 (239)
                      +|++|+++.   +..+..+++....+..+++++.++++..++.++..          .....+||||||||++||||+++
T Consensus       495 ~~v~Q~~~L---f~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~  571 (1321)
T 4f4c_A          495 AVVSQEPAL---FNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVR  571 (1321)
T ss_dssp             EEECSSCCC---CSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTT
T ss_pred             cccCCccee---eCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHcc
Confidence            999999853   45677777754444567888999988887653322          23456899999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      +|+|||||||||+||.++...+.+.+.+.  ++|+|+|||++..+. .||+|++|++|+++ ..|+++++.+
T Consensus       572 ~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~-~aD~Iivl~~G~iv-e~Gth~eL~~  641 (1321)
T 4f4c_A          572 NPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIR-NADLIISCKNGQVV-EVGDHRALMA  641 (1321)
T ss_dssp             CCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTT-TCSEEEEEETTEEE-EEECHHHHHT
T ss_pred             CCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHH-hCCEEEEeeCCeee-ccCCHHHHHH
Confidence            99999999999999999988888888654  679999999999886 59999999999997 6899988753

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=1e-43  Score=357.82  Aligned_cols=203  Identities=23%  Similarity=0.320  Sum_probs=169.0

Q ss_pred             CeEEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eE
Q 026376           27 PIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR   93 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~   93 (239)
                      ..|+++||+|+|+++  .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.           ..
T Consensus       386 g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~  465 (1284)
T 3g5u_A          386 GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI  465 (1284)
T ss_dssp             CCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred             CeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhh
Confidence            359999999999643  36999999999999999999999999999999999999999999999874           25


Q ss_pred             EEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcc----------cccCCCCCCChHHHHHHHHHHHhc
Q 026376           94 IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITF  163 (239)
Q Consensus        94 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkqrv~laral~  163 (239)
                      ++|++|++..   +..+..+++.........+++.++++..++.+.          .......+||||||||++|||||+
T Consensus       466 i~~v~Q~~~l---~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~  542 (1284)
T 3g5u_A          466 IGVVSQEPVL---FATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV  542 (1284)
T ss_dssp             EEEECSSCCC---CSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH
T ss_pred             eEEEcCCCcc---CCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh
Confidence            9999999753   234666666544334556667777666554321          123456789999999999999999


Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhh--cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          164 KKPHIILLDEPSNHLDLDAVEALIQGLVL--FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~--~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      .+|+|||||||||+||+++...+.+.+..  .++|+|+|||+++.+.. ||+|++|++|+++ +.|+++++.+
T Consensus       543 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~-~~g~~~~l~~  613 (1284)
T 3g5u_A          543 RNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIV-EQGNHDELMR  613 (1284)
T ss_dssp             HCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEECSSSCCC-CEECHHHHHH
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence            99999999999999999998888877754  36799999999999976 9999999999997 6899988764

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.6e-44  Score=333.83  Aligned_cols=197  Identities=21%  Similarity=0.267  Sum_probs=161.7

Q ss_pred             EeeEEEcCCCCceeeeeeEEEeCC-----CEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCC
Q 026376           32 SDASFGYPGGPILFKNLNFGIDLD-----SRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD  106 (239)
Q Consensus        32 ~~l~~~y~~~~~~l~~isl~i~~G-----e~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~  106 (239)
                      +++++.|++...+++++||++.+|     |+++|+||||||||||+|+|+|+++|++|+..  ....++|++|+....+ 
T Consensus       350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~--~~~~i~~~~q~~~~~~-  426 (608)
T 3j16_B          350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI--PKLNVSMKPQKIAPKF-  426 (608)
T ss_dssp             SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC--CSCCEEEECSSCCCCC-
T ss_pred             cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc--cCCcEEEecccccccC-
Confidence            678888865446789999999999     88999999999999999999999999999842  2346899999864332 


Q ss_pred             CCCcHHHHHHHhCC--CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHH
Q 026376          107 LSSNPLLYMMRCFP--GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE  184 (239)
Q Consensus       107 ~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~  184 (239)
                       ..+....+.....  ......+.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||||+|||+.++.
T Consensus       427 -~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~  504 (608)
T 3j16_B          427 -PGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDD-IIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRI  504 (608)
T ss_dssp             -CSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTT-TSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHH
T ss_pred             -CccHHHHHHHHhhcccccHHHHHHHHHHcCChh-hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHH
Confidence             2344444332221  123456778999999974 678999999999999999999999999999999999999999988


Q ss_pred             HHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeC--CeEEeeCCChhHHHH
Q 026376          185 ALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSE--GKATPFHGTFHDYKK  234 (239)
Q Consensus       185 ~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~--G~i~~~~g~~~~~~~  234 (239)
                      .+.+.+++    .+.|||+||||++++..+|||+++|++  |++. ..|+++++..
T Consensus       505 ~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~-~~g~p~~~~~  559 (608)
T 3j16_B          505 ICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNA-HARAPESLLT  559 (608)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEE-ECCCCEEHHH
T ss_pred             HHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEE-ecCChHHHhh
Confidence            88776654    367999999999999999999999986  7876 6788877654

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=3.4e-43  Score=354.01  Aligned_cols=203  Identities=25%  Similarity=0.380  Sum_probs=167.5

Q ss_pred             CeEEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eE
Q 026376           27 PIISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VR   93 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~   93 (239)
                      ..++++||+++|+++  .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++.           ..
T Consensus      1029 g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 1108 (1284)
T 3g5u_A         1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQ 1108 (1284)
T ss_dssp             CCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTS
T ss_pred             CcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhc
Confidence            359999999999643  35899999999999999999999999999999999999999999998873           35


Q ss_pred             EEEEeeccCCCCCCCCcHHHHHHHhC--CCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHH
Q 026376           94 IAVFSQHHVDGLDLSSNPLLYMMRCF--PGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKI  161 (239)
Q Consensus        94 ~~~~~q~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~lara  161 (239)
                      ++|++|++..   +..+..+++....  .....+++.++++..++.+...          .....+||||||||++||||
T Consensus      1109 i~~v~Q~~~l---~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARa 1185 (1284)
T 3g5u_A         1109 LGIVSQEPIL---FDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARA 1185 (1284)
T ss_dssp             CEEEESSCCC---CSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHH
T ss_pred             eEEECCCCcc---ccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHH
Confidence            9999999742   3456666664221  1234566777777666542211          12346899999999999999


Q ss_pred             hccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          162 TFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       162 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |+.+|+||||||||++||+.+...+.+.+.+.  +.|||+||||++.+.. ||||++|++|+++ ..|+++++.+
T Consensus      1186 l~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~-~dri~vl~~G~i~-~~g~~~~l~~ 1258 (1284)
T 3g5u_A         1186 LVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQN-ADLIVVIQNGKVK-EHGTHQQLLA 1258 (1284)
T ss_dssp             HHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGS-CSEEEEEETBEEE-EEECHHHHHH
T ss_pred             HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence            99999999999999999999999998888654  5699999999999865 9999999999997 5799988764

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=100.00  E-value=1.9e-42  Score=336.82  Aligned_cols=200  Identities=27%  Similarity=0.426  Sum_probs=162.1

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc-CcCCCceeEEecCceEEEEEeeccCCCCC
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG-ELQPSSGTVFRSAKVRIAVFSQHHVDGLD  106 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~G-l~~p~~G~i~~~~~~~~~~~~q~~~~~~~  106 (239)
                      .|...|++++|+ ++.+|+|+||+|.+|++++|+||||||||||+|+|+| .+   .|. ......+++|++|+.. ...
T Consensus       435 ~L~~~~ls~~yg-~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i---~g~-~~~~~~~~~~v~q~~~-~~~  508 (986)
T 2iw3_A          435 DLCNCEFSLAYG-AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV---DGF-PTQEECRTVYVEHDID-GTH  508 (986)
T ss_dssp             EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS---TTC-CCTTTSCEEETTCCCC-CCC
T ss_pred             eeEEeeEEEEEC-CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCC-ccccceeEEEEccccc-ccc
Confidence            466779999995 5679999999999999999999999999999999995 22   110 0011224678887642 122


Q ss_pred             CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH
Q 026376          107 LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL  186 (239)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l  186 (239)
                      ...+...++....... .+++.++++.+|+.....++++.+||||||||++|||||+.+|++|||||||+|||+.++.++
T Consensus       509 ~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l  587 (986)
T 2iw3_A          509 SDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWL  587 (986)
T ss_dssp             TTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHH
T ss_pred             cCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHH
Confidence            2345555553211122 667889999999964456889999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          187 IQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       187 ~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      .+.|++.+.|||+||||++++..+||++++|++|+++.+.|+++++.+
T Consensus       588 ~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~  635 (986)
T 2iw3_A          588 VNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK  635 (986)
T ss_dssp             HHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred             HHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence            999988677999999999999999999999999999656899998865

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=100.00  E-value=3.3e-43  Score=326.86  Aligned_cols=187  Identities=22%  Similarity=0.288  Sum_probs=147.6

Q ss_pred             EEE-EeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeE---------EecC--------
Q 026376           29 ISF-SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV---------FRSA--------   90 (239)
Q Consensus        29 l~~-~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i---------~~~~--------   90 (239)
                      .++ +||+++|++...+++++| +|++||+++|+||||||||||+|+|+|+++|++|++         .+.+        
T Consensus        21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~   99 (538)
T 1yqt_A           21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE   99 (538)
T ss_dssp             ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred             hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence            455 699999954334899999 999999999999999999999999999999999995         1222        


Q ss_pred             -----ceEEEEEeeccCCCCC-CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 026376           91 -----KVRIAVFSQHHVDGLD-LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK  164 (239)
Q Consensus        91 -----~~~~~~~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~  164 (239)
                           ...+++++|....... ...+....+...   ...+++.++++.+|+.. ..++++.+|||||||||+|||||+.
T Consensus       100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~---~~~~~~~~~l~~lgl~~-~~~~~~~~LSgGekQRv~iAraL~~  175 (538)
T 1yqt_A          100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA---DETGKLEEVVKALELEN-VLEREIQHLSGGELQRVAIAAALLR  175 (538)
T ss_dssp             HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH---CSSSCHHHHHHHTTCTT-TTTSBGGGCCHHHHHHHHHHHHHHS
T ss_pred             HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh---hHHHHHHHHHHHcCCCh-hhhCChhhCCHHHHHHHHHHHHHhc
Confidence                 1246788876421111 111333333221   11345788999999974 5688999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCC
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEG  220 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G  220 (239)
                      +|++||||||||+||+.++.++++.|+++   +.|||+||||++++..+||++++|++|
T Consensus       176 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~  234 (538)
T 1yqt_A          176 NATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE  234 (538)
T ss_dssp             CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence            99999999999999999998887777543   779999999999999999999999864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=100.00  E-value=8.5e-43  Score=327.69  Aligned_cols=188  Identities=23%  Similarity=0.289  Sum_probs=151.3

Q ss_pred             eEEE--------EeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeE---------EecC
Q 026376           28 IISF--------SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV---------FRSA   90 (239)
Q Consensus        28 ~l~~--------~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i---------~~~~   90 (239)
                      +|++        +|++++|++...+|+++| +|++||+++|+||||||||||+|+|+|+++|++|++         .+.+
T Consensus        83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G  161 (607)
T 3bk7_A           83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG  161 (607)
T ss_dssp             CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTT
T ss_pred             eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCC
Confidence            4788        899999954334899999 999999999999999999999999999999999995         1222


Q ss_pred             -------------ceEEEEEeeccCCCC-CCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHH
Q 026376           91 -------------KVRIAVFSQHHVDGL-DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV  156 (239)
Q Consensus        91 -------------~~~~~~~~q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv  156 (239)
                                   ...+++++|...... .+..+..+.+...   ...+++.++++.+|+.+ ..++++.+|||||||||
T Consensus       162 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~---~~~~~~~~~L~~lgL~~-~~~~~~~~LSGGekQRv  237 (607)
T 3bk7_A          162 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV---DEVGKFEEVVKELELEN-VLDRELHQLSGGELQRV  237 (607)
T ss_dssp             STHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT---CCSSCHHHHHHHTTCTT-GGGSBGGGCCHHHHHHH
T ss_pred             EehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh---HHHHHHHHHHHHcCCCc-hhCCChhhCCHHHHHHH
Confidence                         124677777632111 1112344333221   12345788999999974 57889999999999999


Q ss_pred             HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCC
Q 026376          157 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEG  220 (239)
Q Consensus       157 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G  220 (239)
                      +|||||+.+|++|||||||++||+.++..+.+.|+++   +.|||+||||++++..+||++++|+++
T Consensus       238 aIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~  304 (607)
T 3bk7_A          238 AIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE  304 (607)
T ss_dssp             HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred             HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence            9999999999999999999999999998887777654   679999999999999999999999865

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-40  Score=309.87  Aligned_cols=186  Identities=18%  Similarity=0.224  Sum_probs=141.7

Q ss_pred             eeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEE-----------ecCc----------
Q 026376           33 DASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF-----------RSAK----------   91 (239)
Q Consensus        33 ~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~-----------~~~~----------   91 (239)
                      |++++|+++...+++++ .+.+||+++|+||||||||||||+|+|+++|++|+|.           +.+.          
T Consensus        82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~  160 (608)
T 3j16_B           82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML  160 (608)
T ss_dssp             TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHH
T ss_pred             CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHH
Confidence            56888865555677777 6899999999999999999999999999999999983           1111          


Q ss_pred             ---eEEEEEeeccCC----CCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 026376           92 ---VRIAVFSQHHVD----GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK  164 (239)
Q Consensus        92 ---~~~~~~~q~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~  164 (239)
                         ....+.+|....    ......+....+.. ......+++.++++.+++.. ..++++.+|||||||||+|||||+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~-~~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGe~Qrv~iAraL~~  238 (608)
T 3j16_B          161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKL-RMEKSPEDVKRYIKILQLEN-VLKRDIEKLSGGELQRFAIGMSCVQ  238 (608)
T ss_dssp             HTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHH-HCCSCHHHHHHHHHHHTCTG-GGGSCTTTCCHHHHHHHHHHHHHHS
T ss_pred             HHhhhhhhchhhhhhhhhhhcchhhHHHHHHhh-hhhhHHHHHHHHHHHcCCcc-hhCCChHHCCHHHHHHHHHHHHHHh
Confidence               001122221100    00000011111111 12234567899999999974 5789999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEEeCCe
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVVSEGK  221 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l~~G~  221 (239)
                      +|++|||||||++||+.++..+.+.++++   +.|||+||||++++..+||++++|++|.
T Consensus       239 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~  298 (608)
T 3j16_B          239 EADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP  298 (608)
T ss_dssp             CCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred             CCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence            99999999999999999998888877654   5699999999999999999999998765

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=100.00  E-value=3e-39  Score=307.54  Aligned_cols=190  Identities=19%  Similarity=0.205  Sum_probs=129.3

Q ss_pred             CceeeeeeEEEeCCCEEEEECCCCCcHHHHH---------------------HHHhcCcCCCceeEE-------ecCc--
Q 026376           42 PILFKNLNFGIDLDSRIAMVGPNGIGKSTIL---------------------KLIAGELQPSSGTVF-------RSAK--   91 (239)
Q Consensus        42 ~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl---------------------~~l~Gl~~p~~G~i~-------~~~~--   91 (239)
                      ..+|+||||+|++||+++|+||||||||||+                     +++.|+..|+.|.|.       +++.  
T Consensus        31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~  110 (670)
T 3ux8_A           31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT  110 (670)
T ss_dssp             STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred             ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence            4589999999999999999999999999998                     999999999866553       2221  


Q ss_pred             -----eEEEEEeeccCCC-----------------CCCCCcHHHHHHH--hC--CCC----cH------HHHHHHHHhcC
Q 026376           92 -----VRIAVFSQHHVDG-----------------LDLSSNPLLYMMR--CF--PGV----PE------QKLRAHLGSFG  135 (239)
Q Consensus        92 -----~~~~~~~q~~~~~-----------------~~~~~~~~~~~~~--~~--~~~----~~------~~~~~~l~~~~  135 (239)
                           ..+++++|.....                 .....+..+++..  ..  ...    ..      .+..++++.+|
T Consensus       111 ~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  190 (670)
T 3ux8_A          111 SRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVG  190 (670)
T ss_dssp             ----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTT
T ss_pred             hccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcC
Confidence                 1223333321100                 0000111111100  00  000    00      11223588899


Q ss_pred             CCcccccCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEEEecCHHHHhhh
Q 026376          136 VTGNLALQPMYTLSGGQKSRVAFAKITFKKPH--IILLDEPSNHLDLDAVEALIQGLVL---FQGGILMVSHDEHLISGS  210 (239)
Q Consensus       136 l~~~~~~~~~~~LSgGqkqrv~laral~~~p~--llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~vsHd~~~~~~~  210 (239)
                      +.+...++++.+|||||||||+|||||+.+|+  +|||||||+|||+.++.++++.+++   .+.|||+||||++++. .
T Consensus       191 L~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~-~  269 (670)
T 3ux8_A          191 LDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-A  269 (670)
T ss_dssp             CTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHH-H
T ss_pred             CchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-h
Confidence            97554678999999999999999999999998  9999999999999999888776654   4679999999999876 5


Q ss_pred             cCeEEEE------eCCeEEeeCCChhHHH
Q 026376          211 VEELWVV------SEGKATPFHGTFHDYK  233 (239)
Q Consensus       211 ~d~i~~l------~~G~i~~~~g~~~~~~  233 (239)
                      ||++++|      ++|+++ +.|+++++.
T Consensus       270 ~d~ii~l~~g~~~~~G~i~-~~g~~~~~~  297 (670)
T 3ux8_A          270 ADYLIDIGPGAGIHGGEVV-AAGTPEEVM  297 (670)
T ss_dssp             CSEEEEECSSSGGGCCSEE-EEECHHHHH
T ss_pred             CCEEEEecccccccCCEEE-EecCHHHHh
Confidence            9999999      889997 689888764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=100.00  E-value=3.6e-39  Score=299.38  Aligned_cols=184  Identities=20%  Similarity=0.262  Sum_probs=138.1

Q ss_pred             EeeEEEcCCCCceeeeeeEE-EeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeE-----------EecCc--------
Q 026376           32 SDASFGYPGGPILFKNLNFG-IDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV-----------FRSAK--------   91 (239)
Q Consensus        32 ~~l~~~y~~~~~~l~~isl~-i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i-----------~~~~~--------   91 (239)
                      ++.+.+|+.+.  |+-..|. +++||++||+||||||||||+|+|+|+++|++|+|           .+.+.        
T Consensus         3 ~~~~~~~~~~~--f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~   80 (538)
T 3ozx_A            3 GEVIHRYKVNG--FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKE   80 (538)
T ss_dssp             CCEEEESSTTS--CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHH
T ss_pred             CCCceecCCCc--eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHH
Confidence            35678896443  3333444 45899999999999999999999999999999998           22221        


Q ss_pred             -----eEEEEEeeccCCCC-CCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 026376           92 -----VRIAVFSQHHVDGL-DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK  165 (239)
Q Consensus        92 -----~~~~~~~q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~  165 (239)
                           ..+....|...... ....+....+...   ...+++.++++.+++.. ..++++.+|||||||||+|||||+.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~---~~~~~~~~~l~~l~l~~-~~~~~~~~LSgGe~Qrv~iA~aL~~~  156 (538)
T 3ozx_A           81 LYSNELKIVHKIQYVEYASKFLKGTVNEILTKI---DERGKKDEVKELLNMTN-LWNKDANILSGGGLQRLLVAASLLRE  156 (538)
T ss_dssp             HHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHH---CCSSCHHHHHHHTTCGG-GTTSBGGGCCHHHHHHHHHHHHHHSC
T ss_pred             HhhcccchhhccchhhhhhhhccCcHHHHhhcc---hhHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHHcC
Confidence                 12333333321100 0111222222221   12335678899999964 66889999999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCe
Q 026376          166 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGK  221 (239)
Q Consensus       166 p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~  221 (239)
                      |++||||||||+||+.++.++.+.++++  +.|||+||||++++..+||+|++|++|.
T Consensus       157 p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~  214 (538)
T 3ozx_A          157 ADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES  214 (538)
T ss_dssp             CSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred             CCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence            9999999999999999999888877654  6799999999999999999999998654

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=100.00  E-value=2.4e-37  Score=294.51  Aligned_cols=107  Identities=24%  Similarity=0.342  Sum_probs=92.1

Q ss_pred             HHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEE
Q 026376          125 QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP---HIILLDEPSNHLDLDAVEALIQGLVL---FQGGIL  198 (239)
Q Consensus       125 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p---~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii  198 (239)
                      .+..+.+..+++.....++++.+|||||||||+|||||+.+|   ++|||||||+|||+.++..+++.+++   .+.|||
T Consensus       521 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi  600 (670)
T 3ux8_A          521 KRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVL  600 (670)
T ss_dssp             HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence            455677888998654567889999999999999999999887   59999999999999998888776654   467999


Q ss_pred             EEecCHHHHhhhcCeEEEE------eCCeEEeeCCChhHHH
Q 026376          199 MVSHDEHLISGSVEELWVV------SEGKATPFHGTFHDYK  233 (239)
Q Consensus       199 ~vsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~  233 (239)
                      +||||++++. .||+|++|      ++|+++ +.|+++++.
T Consensus       601 ~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i~-~~g~~~~~~  639 (670)
T 3ux8_A          601 VIEHNLDVIK-TADYIIDLGPEGGDRGGQIV-AVGTPEEVA  639 (670)
T ss_dssp             EECCCHHHHT-TCSEEEEEESSSGGGCCEEE-EEECHHHHH
T ss_pred             EEeCCHHHHH-hCCEEEEecCCcCCCCCEEE-EecCHHHHH
Confidence            9999999885 69999999      899997 689988864

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=100.00  E-value=2.3e-35  Score=284.50  Aligned_cols=108  Identities=23%  Similarity=0.292  Sum_probs=93.6

Q ss_pred             HHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccC---CCEEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEE
Q 026376          125 QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK---PHIILLDEPSNHLDLDAVEALIQGLV---LFQGGIL  198 (239)
Q Consensus       125 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~---p~llllDEPt~~LD~~~~~~l~~~l~---~~~~tii  198 (239)
                      .++.++|+.+++.....++++.+|||||||||+||++|+.+   |+||||||||+|||+..+..+.+.+.   +.+.|||
T Consensus       708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI  787 (842)
T 2vf7_A          708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI  787 (842)
T ss_dssp             HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence            35678899999975445788999999999999999999996   79999999999999999888877664   4477999


Q ss_pred             EEecCHHHHhhhcCeEEEE------eCCeEEeeCCChhHHHH
Q 026376          199 MVSHDEHLISGSVEELWVV------SEGKATPFHGTFHDYKK  234 (239)
Q Consensus       199 ~vsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~  234 (239)
                      +||||++++ ..||+|++|      ++|+++ +.|+++++.+
T Consensus       788 visHdl~~i-~~aDrii~L~p~~g~~~G~Iv-~~g~~~el~~  827 (842)
T 2vf7_A          788 AVEHKMQVV-AASDWVLDIGPGAGEDGGRLV-AQGTPAEVAQ  827 (842)
T ss_dssp             EECCCHHHH-TTCSEEEEECSSSGGGCCSEE-EEECHHHHTT
T ss_pred             EEcCCHHHH-HhCCEEEEECCCCCCCCCEEE-EEcCHHHHHh
Confidence            999999999 689999999      689997 6788888743

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-39  Score=295.86  Aligned_cols=193  Identities=11%  Similarity=0.069  Sum_probs=152.6

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCce-e-EEecCc--eEEEEEeecc
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG-T-VFRSAK--VRIAVFSQHH  101 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G-~-i~~~~~--~~~~~~~q~~  101 (239)
                      .++++++|+++.|+       ++||++++|++++|+||||||||||+|+|+|+++|++| + |++++.  ..++|++|+.
T Consensus       116 ~~mi~~~nl~~~y~-------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~  188 (460)
T 2npi_A          116 HTMKYIYNLHFMLE-------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCI  188 (460)
T ss_dssp             CTHHHHHHHHHHHH-------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCC
T ss_pred             cchhhhhhhhehhh-------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccch
Confidence            45788999998883       69999999999999999999999999999999999999 8 988763  4578888875


Q ss_pred             CC-----CCCCCCcHHHHHHHh-CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHH--hccCCCE----E
Q 026376          102 VD-----GLDLSSNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI--TFKKPHI----I  169 (239)
Q Consensus       102 ~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lara--l~~~p~l----l  169 (239)
                      ..     .++...+.  +.... ......+++.++++.+|+... .+  +.+|||||||||+||||  |+.+|++    |
T Consensus       189 ~l~~~~~~~tv~eni--~~~~~~~~~~~~~~~~~ll~~~gl~~~-~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGL  263 (460)
T 2npi_A          189 SATPISDILDAQLPT--WGQSLTSGATLLHNKQPMVKNFGLERI-NE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGC  263 (460)
T ss_dssp             EEEECCSCCCTTCTT--CSCBCBSSCCSSCCBCCEECCCCSSSG-GG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCE
T ss_pred             hhcccccccchhhhh--cccccccCcchHHHHHHHHHHhCCCcc-cc--hhhhhHHHHHHHHHHHHHHhccCcccCcceE
Confidence            21     11111111  10000 001122345567888898653 33  78999999999999999  9999999    9


Q ss_pred             EEeC-CCCCCCHHHHHHHHHHHhhcCCEEEEEecCHH------HHhhhcCe-----EEEEe-CCeEEeeCCChhHHH
Q 026376          170 LLDE-PSNHLDLDAVEALIQGLVLFQGGILMVSHDEH------LISGSVEE-----LWVVS-EGKATPFHGTFHDYK  233 (239)
Q Consensus       170 llDE-Pt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~------~~~~~~d~-----i~~l~-~G~i~~~~g~~~~~~  233 (239)
                      |||| ||++||+. ...+.+.+++.+.|+|+||||.+      ++..+||+     |++|+ +|+++  .|+++++.
T Consensus       264 lLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv--~g~~~~~~  337 (460)
T 2npi_A          264 IVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS--AVDDVYKR  337 (460)
T ss_dssp             EEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC--CCCHHHHH
T ss_pred             EEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE--ECCHHHHh
Confidence            9999 99999999 67777777777889999999987      77889999     99999 99986  68887663

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=100.00  E-value=8e-35  Score=281.77  Aligned_cols=106  Identities=25%  Similarity=0.341  Sum_probs=91.8

Q ss_pred             HHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEEE
Q 026376          126 KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP---HIILLDEPSNHLDLDAVEALIQGLVL---FQGGILM  199 (239)
Q Consensus       126 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p---~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii~  199 (239)
                      +..++++.+++.....++++.+|||||||||+||++|+.+|   ++|||||||+|||+.++..+++.|.+   .+.|||+
T Consensus       824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv  903 (972)
T 2r6f_A          824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV  903 (972)
T ss_dssp             HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence            45678999999753567899999999999999999999865   99999999999999999888776654   4679999


Q ss_pred             EecCHHHHhhhcCeEEEE------eCCeEEeeCCChhHHH
Q 026376          200 VSHDEHLISGSVEELWVV------SEGKATPFHGTFHDYK  233 (239)
Q Consensus       200 vsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~  233 (239)
                      ||||++++. .||++++|      ++|+++ +.|+++++.
T Consensus       904 isHdl~~i~-~aDrIivL~p~gG~~~G~Iv-~~g~~~el~  941 (972)
T 2r6f_A          904 IEHNLDVIK-TADYIIDLGPEGGDRGGQIV-AVGTPEEVA  941 (972)
T ss_dssp             ECCCHHHHT-TCSEEEEECSSSTTSCCSEE-EEESHHHHH
T ss_pred             EcCCHHHHH-hCCEEEEEcCCCCCCCCEEE-EecCHHHHH
Confidence            999999985 79999999      689997 678887764

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=5.8e-34  Score=276.71  Aligned_cols=108  Identities=24%  Similarity=0.335  Sum_probs=93.9

Q ss_pred             HHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHHHHHHHHHHhh---cCCEEE
Q 026376          125 QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP---HIILLDEPSNHLDLDAVEALIQGLVL---FQGGIL  198 (239)
Q Consensus       125 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p---~llllDEPt~~LD~~~~~~l~~~l~~---~~~tii  198 (239)
                      .++.++|+.+|+.....++++.+|||||||||+|||||+.+|   ++|||||||+|||+.++..+++.|.+   .+.|||
T Consensus       783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVI  862 (916)
T 3pih_A          783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVI  862 (916)
T ss_dssp             HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence            456778999999755567899999999999999999999875   79999999999999999888777654   477999


Q ss_pred             EEecCHHHHhhhcCeEEEE------eCCeEEeeCCChhHHHH
Q 026376          199 MVSHDEHLISGSVEELWVV------SEGKATPFHGTFHDYKK  234 (239)
Q Consensus       199 ~vsHd~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~  234 (239)
                      +||||++++.. ||+|++|      ++|+++ +.|+++++.+
T Consensus       863 vI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv-~~Gtpeel~~  902 (916)
T 3pih_A          863 VIEHNLDVIKN-ADHIIDLGPEGGKEGGYIV-ATGTPEEIAK  902 (916)
T ss_dssp             EECCCHHHHTT-CSEEEEEESSSGGGCCEEE-EEESHHHHHS
T ss_pred             EEeCCHHHHHh-CCEEEEecCCCCCCCCEEE-EEcCHHHHHh
Confidence            99999999865 9999999      899997 6899988753

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=100.00  E-value=1.1e-33  Score=254.58  Aligned_cols=75  Identities=24%  Similarity=0.328  Sum_probs=70.0

Q ss_pred             CChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEE----eC
Q 026376          148 LSGGQKSRVAFAKITFKKP--HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVV----SE  219 (239)
Q Consensus       148 LSgGqkqrv~laral~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l----~~  219 (239)
                      ||||||||++||++|+.+|  ++|||||||+|||+.++.++.+.|+++  +.|||+||||++++. +||++++|    ++
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~-~~d~i~~l~k~~~~  374 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKVEKQVED  374 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHT-TCSEEEEEEEEEET
T ss_pred             cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHh-hcCeEEEEEEeccC
Confidence            6999999999999999999  999999999999999999999998876  579999999998875 79999999    99


Q ss_pred             CeEE
Q 026376          220 GKAT  223 (239)
Q Consensus       220 G~i~  223 (239)
                      |+++
T Consensus       375 G~~~  378 (415)
T 4aby_A          375 GRTV  378 (415)
T ss_dssp             TEEE
T ss_pred             CceE
Confidence            9875

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.97  E-value=2.5e-31  Score=236.35  Aligned_cols=81  Identities=19%  Similarity=0.306  Sum_probs=73.5

Q ss_pred             cCCCCCCChHHHHHHHHHHHhc------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcC
Q 026376          142 LQPMYTLSGGQKSRVAFAKITF------KKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVE  212 (239)
Q Consensus       142 ~~~~~~LSgGqkqrv~laral~------~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d  212 (239)
                      ++++.+|||||||||+||+||+      .+|++|||||||+|||+.++..+++.+.+.   +.|||+||||++++ ..||
T Consensus       274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~-~~~d  352 (365)
T 3qf7_A          274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFS-EAFD  352 (365)
T ss_dssp             EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHH-TTCS
T ss_pred             CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHH-HhCC
Confidence            4678899999999999999999      799999999999999999999988887654   57999999999984 5799


Q ss_pred             eEEEEeCCeEE
Q 026376          213 ELWVVSEGKAT  223 (239)
Q Consensus       213 ~i~~l~~G~i~  223 (239)
                      ++++|++|+++
T Consensus       353 ~~~~l~~G~i~  363 (365)
T 3qf7_A          353 RKLRITGGVVV  363 (365)
T ss_dssp             CEEEEETTEEC
T ss_pred             EEEEEECCEEE
Confidence            99999999985

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.97  E-value=2.8e-34  Score=236.67  Aligned_cols=149  Identities=15%  Similarity=0.108  Sum_probs=97.0

Q ss_pred             CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEec--------CceEEEEEeeccCCCC-CCCCcH
Q 026376           41 GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS--------AKVRIAVFSQHHVDGL-DLSSNP  111 (239)
Q Consensus        41 ~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~--------~~~~~~~~~q~~~~~~-~~~~~~  111 (239)
                      ++.+|+++    ++|++++|+||||||||||+++|+|+ +|++|+|...        .+..++|++|++...+ .+....
T Consensus        12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~   86 (208)
T 3b85_A           12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPL   86 (208)
T ss_dssp             HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHH
T ss_pred             HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHH
Confidence            34688885    89999999999999999999999999 9999998431        1234788888752222 111000


Q ss_pred             HHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHh
Q 026376          112 LLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV  191 (239)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~  191 (239)
                      ...   ........++.++++. ++              |||||++|||||+.+|++|||||||++    ++..+.+.+.
T Consensus        87 ~~~---~~~~~~~~~~~~~l~~-gl--------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~  144 (208)
T 3b85_A           87 HDA---LRDMVEPEVIPKLMEA-GI--------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLT  144 (208)
T ss_dssp             HHH---HTTTSCTTHHHHHHHT-TS--------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHT
T ss_pred             HHH---HHHhccHHHHHHHHHh-CC--------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHH
Confidence            111   1111223455666654 32              999999999999999999999999999    6667777776


Q ss_pred             hc--CCEEEEEecCHHHHhhhcCeEEEEeCCe
Q 026376          192 LF--QGGILMVSHDEHLISGSVEELWVVSEGK  221 (239)
Q Consensus       192 ~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~  221 (239)
                      +.  +.||| ||||++++..    ....++|.
T Consensus       145 ~l~~g~tii-vtHd~~~~~~----~~~~~~G~  171 (208)
T 3b85_A          145 RLGFGSKMV-VTGDITQVDL----PGGQKSGL  171 (208)
T ss_dssp             TBCTTCEEE-EEEC----------------CC
T ss_pred             HhcCCCEEE-EECCHHHHhC----cCCCCCcH
Confidence            54  56888 9999987764    33455665

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.97  E-value=1.8e-31  Score=213.15  Aligned_cols=145  Identities=12%  Similarity=0.105  Sum_probs=95.9

Q ss_pred             eeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHH
Q 026376           47 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQK  126 (239)
Q Consensus        47 ~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (239)
                      |+||++++||+++|+||||||||||+|++.+-...      .......++++|++... .+........        ...
T Consensus         1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~------~~~d~~~g~~~~~~~~~-~~~~~~~~~~--------~~~   65 (171)
T 4gp7_A            1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEV------ISSDFCRGLMSDDENDQ-TVTGAAFDVL--------HYI   65 (171)
T ss_dssp             CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGE------EEHHHHHHHHCSSTTCG-GGHHHHHHHH--------HHH
T ss_pred             CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeE------EccHHHHHHhcCcccch-hhHHHHHHHH--------HHH
Confidence            68999999999999999999999999976532211      11111123444442110 0000001100        011


Q ss_pred             HHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH----------------HHHHHHHHH
Q 026376          127 LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD----------------AVEALIQGL  190 (239)
Q Consensus       127 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~----------------~~~~l~~~l  190 (239)
                      . ......+... ..+ .....|+|||||++||||++.+|++|+|||||++||+.                ....+.+.+
T Consensus        66 ~-~~~~~~g~~~-~~~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l  142 (171)
T 4gp7_A           66 V-SKRLQLGKLT-VVD-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSI  142 (171)
T ss_dssp             H-HHHHHTTCCE-EEE-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHS
T ss_pred             H-HHHHhCCCeE-EEE-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhh
Confidence            1 1222345432 222 33567999999999999999999999999999999998                446666654


Q ss_pred             ---hhcCCEEEEEecCHHHHhh
Q 026376          191 ---VLFQGGILMVSHDEHLISG  209 (239)
Q Consensus       191 ---~~~~~tii~vsHd~~~~~~  209 (239)
                         ++.+.|+|+||||++++..
T Consensus       143 ~~l~~~g~tvi~vtH~~~~~~~  164 (171)
T 4gp7_A          143 KGLQREGFRYVYILNSPEEVEE  164 (171)
T ss_dssp             TTHHHHTCSEEEEECSHHHHHH
T ss_pred             hhHHhcCCcEEEEeCCHHHhhh
Confidence               3447799999999999875

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.96  E-value=8.8e-30  Score=204.93  Aligned_cols=153  Identities=13%  Similarity=0.040  Sum_probs=108.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCC-ceeEEe-----cCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHH
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQPS-SGTVFR-----SAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH  130 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~p~-~G~i~~-----~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (239)
                      +++|+||||||||||+++|+|++... .|....     .....++|++|+..    ...+.                   
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~----~~~~~-------------------   58 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTE----GKKKI-------------------   58 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETT----CCEEE-------------------
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCc----HHHHH-------------------
Confidence            68999999999999999999998532 332211     11235788888641    11111                   


Q ss_pred             HHhcCCC-cccccCCCCCCChHHHHHHHHHHH-----hccCCCEEEEeC--CCCCCCHHHHHHHHHHHhhcCCEEEEEe-
Q 026376          131 LGSFGVT-GNLALQPMYTLSGGQKSRVAFAKI-----TFKKPHIILLDE--PSNHLDLDAVEALIQGLVLFQGGILMVS-  201 (239)
Q Consensus       131 l~~~~l~-~~~~~~~~~~LSgGqkqrv~lara-----l~~~p~llllDE--Pt~~LD~~~~~~l~~~l~~~~~tii~vs-  201 (239)
                      +..++.. ....++++.+||||||||++||+|     ++.+|++|||||  ||++||+.....+.+.+.+.+.|+|++| 
T Consensus        59 ~~~~~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H  138 (178)
T 1ye8_A           59 FSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIP  138 (178)
T ss_dssp             EEETTCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECC
T ss_pred             HHhhcCCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEc
Confidence            0011111 123467788999999999999996     999999999999  9999999999999999988666788888 


Q ss_pred             --cCHHHHhhhcCeEEEEeCCeEEee-CCChhHHHHHh
Q 026376          202 --HDEHLISGSVEELWVVSEGKATPF-HGTFHDYKKML  236 (239)
Q Consensus       202 --Hd~~~~~~~~d~i~~l~~G~i~~~-~g~~~~~~~~~  236 (239)
                        ||.+++..+|++    .+|++..+ ..+.+++.+++
T Consensus       139 ~~h~~~~~~~i~~r----~~~~i~~~~~~~r~~~~~~l  172 (178)
T 1ye8_A          139 IRDVHPLVKEIRRL----PGAVLIELTPENRDVILEDI  172 (178)
T ss_dssp             SSCCSHHHHHHHTC----TTCEEEECCTTTTTTHHHHH
T ss_pred             cCCCchHHHHHHhc----CCcEEEEecCcCHHHHHHHH
Confidence              599999999998    34454322 24445554433

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.96  E-value=1.2e-28  Score=215.43  Aligned_cols=90  Identities=21%  Similarity=0.222  Sum_probs=73.9

Q ss_pred             ccCCCCCCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeE
Q 026376          141 ALQPMYTLSGGQKSRVAFAKITF----KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEEL  214 (239)
Q Consensus       141 ~~~~~~~LSgGqkqrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i  214 (239)
                      .++++.+||+|||||++||+||+    .+|++|||||||++||+..+..+.+.+.+.  +.+||+|||+.+ +..+||++
T Consensus       213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~  291 (322)
T 1e69_A          213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLL  291 (322)
T ss_dssp             CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEE
T ss_pred             ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceE
Confidence            35567899999999999999997    689999999999999999999998888765  569999999975 45689987


Q ss_pred             --EEEeCCeEEeeCCChhH
Q 026376          215 --WVVSEGKATPFHGTFHD  231 (239)
Q Consensus       215 --~~l~~G~i~~~~g~~~~  231 (239)
                        ++|.+|.........++
T Consensus       292 ~~v~~~~g~s~~~~~~~~~  310 (322)
T 1e69_A          292 HGVTMVNGVSAIVPVEVEK  310 (322)
T ss_dssp             EEEEESSSCEEEEECCC--
T ss_pred             EEEEEeCCEEEEEEEEcch
Confidence              88888876544444444

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.94  E-value=1.1e-30  Score=234.81  Aligned_cols=170  Identities=14%  Similarity=0.079  Sum_probs=127.7

Q ss_pred             CceeeeeeEEEeCCC--------------------EEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce--EEEEEee
Q 026376           42 PILFKNLNFGIDLDS--------------------RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--RIAVFSQ   99 (239)
Q Consensus        42 ~~~l~~isl~i~~Ge--------------------~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~--~~~~~~q   99 (239)
                      +.++++|||+|++|+                    +++|+||||||||||+|+|+|+.+|++|+|..++..  +.++++|
T Consensus        36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q  115 (413)
T 1tq4_A           36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK  115 (413)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred             HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence            358999999999999                    999999999999999999999999999999876532  2377888


Q ss_pred             ccCC-CCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChH--HHHHHHHHHHhcc----------CC
Q 026376          100 HHVD-GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGG--QKSRVAFAKITFK----------KP  166 (239)
Q Consensus       100 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG--qkqrv~laral~~----------~p  166 (239)
                      .+.. .+.+..++..    .   ....++.++++.+++.+. . ..+. ||+|  |+||++||++|+.          +|
T Consensus       116 ~~~~~~ltv~D~~g~----~---~~~~~~~~~L~~~~L~~~-~-~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkp  185 (413)
T 1tq4_A          116 HPNIPNVVFWDLPGI----G---STNFPPDTYLEKMKFYEY-D-FFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKV  185 (413)
T ss_dssp             CSSCTTEEEEECCCG----G---GSSCCHHHHHHHTTGGGC-S-EEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred             ccccCCeeehHhhcc----c---chHHHHHHHHHHcCCCcc-C-CeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecC
Confidence            6421 1111111100    0   112357788999888642 2 2333 9999  9999999999999          99


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhhc--------C----CEEEEEecCHHH--HhhhcCeEE-EEeCCe
Q 026376          167 HIILLDEPSNHLDLDAVEALIQGLVLF--------Q----GGILMVSHDEHL--ISGSVEELW-VVSEGK  221 (239)
Q Consensus       167 ~llllDEPt~~LD~~~~~~l~~~l~~~--------~----~tii~vsHd~~~--~~~~~d~i~-~l~~G~  221 (239)
                      ++++|||||++||+.++..+++.+++.        +    .+|+++||++..  ++.+||++. .|..|.
T Consensus       186 dlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~  255 (413)
T 1tq4_A          186 DSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  255 (413)
T ss_dssp             HHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             cccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence            999999999999998877766554332        1    368889999887  888999885 455554

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.94  E-value=1e-31  Score=232.80  Aligned_cols=163  Identities=15%  Similarity=0.174  Sum_probs=120.4

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCC
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDL  107 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~  107 (239)
                      +|+++||+|.|+  ..+|+++||+|++|++++|+||||||||||+++|+|++   +|+|.       +|++|.+...   
T Consensus       101 ~i~~~~vs~~y~--~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~-------~~v~q~~~lf---  165 (305)
T 2v9p_A          101 FFNYQNIELITF--INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL-------SFANHKSHFW---  165 (305)
T ss_dssp             HHHHTTCCHHHH--HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE-------CGGGTTSGGG---
T ss_pred             eEEEEEEEEEcC--hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE-------EEecCccccc---
Confidence            588999999995  56899999999999999999999999999999999999   89984       4556654211   


Q ss_pred             CCcHHH-HHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH
Q 026376          108 SSNPLL-YMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL  186 (239)
Q Consensus       108 ~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l  186 (239)
                      ..+... ++.. .... ...+.+.++.+ +... .+  ...||||||||   ||||+.+|+|||    |++||+.+...+
T Consensus       166 ~~ti~~~ni~~-~~~~-~~~~~~~i~~~-L~~g-ld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i  232 (305)
T 2v9p_A          166 LASLADTRAAL-VDDA-THACWRYFDTY-LRNA-LD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRY  232 (305)
T ss_dssp             GGGGTTCSCEE-EEEE-CHHHHHHHHHT-TTGG-GG--TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGG
T ss_pred             cccHHHHhhcc-Cccc-cHHHHHHHHHH-hHcc-CC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHH
Confidence            011110 1000 0011 12455666654 3322 22  68999999999   999999999999    999999887766


Q ss_pred             HHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376          187 IQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       187 ~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                      ..           +||++..+ ..||+| +|++|+++ +.|+++++
T Consensus       233 ~~-----------ltH~~~~~-~~aD~i-vl~~G~iv-~~g~~~el  264 (305)
T 2v9p_A          233 LY-----------LHSRVQTF-RFEQPC-TDESGEQP-FNITDADW  264 (305)
T ss_dssp             GG-----------GTTTEEEE-ECCCCC-CCC---CC-CCCCHHHH
T ss_pred             HH-----------HhCCHHHH-HhCCEE-EEeCCEEE-EeCCHHHH
Confidence            42           29998876 479999 99999997 78998886

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.93  E-value=3e-28  Score=213.70  Aligned_cols=146  Identities=15%  Similarity=0.145  Sum_probs=106.9

Q ss_pred             eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCc
Q 026376           44 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP  123 (239)
Q Consensus        44 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~  123 (239)
                      +++++||.+++|++++|+||||||||||+++|+|+++|++|.|.+++...           .....         ...  
T Consensus       160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e-----------~~~~~---------~~~--  217 (330)
T 2pt7_A          160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE-----------IVFKH---------HKN--  217 (330)
T ss_dssp             HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC-----------CCCSS---------CSS--
T ss_pred             HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec-----------ccccc---------chh--
Confidence            78999999999999999999999999999999999999999998765320           00000         000  


Q ss_pred             HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecC
Q 026376          124 EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHD  203 (239)
Q Consensus       124 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd  203 (239)
                               .+++   ..     .  |||+||++||+||..+|++|++||||+.   + ...+++.+..-+.|+|+++|+
T Consensus       218 ---------~i~~---~~-----g--gg~~~r~~la~aL~~~p~ilildE~~~~---e-~~~~l~~~~~g~~tvi~t~H~  274 (330)
T 2pt7_A          218 ---------YTQL---FF-----G--GNITSADCLKSCLRMRPDRIILGELRSS---E-AYDFYNVLCSGHKGTLTTLHA  274 (330)
T ss_dssp             ---------EEEE---EC-----B--TTBCHHHHHHHHTTSCCSEEEECCCCST---H-HHHHHHHHHTTCCCEEEEEEC
T ss_pred             ---------EEEE---Ee-----C--CChhHHHHHHHHhhhCCCEEEEcCCChH---H-HHHHHHHHhcCCCEEEEEEcc
Confidence                     0000   00     0  8999999999999999999999999982   2 233444454323479999999


Q ss_pred             HHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376          204 EHLISGSVEELWVVSEGKATPFHGTFHDYKKM  235 (239)
Q Consensus       204 ~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  235 (239)
                      .+ +...|||+++|.+|......-+.+.+.++
T Consensus       275 ~~-~~~~~dri~~l~~g~~~~~~~~~~~i~~~  305 (330)
T 2pt7_A          275 GS-SEEAFIRLANMSSSNSAARNIKFESLIEG  305 (330)
T ss_dssp             SS-HHHHHHHHHHHHHTSGGGTTSCHHHHHHH
T ss_pred             cH-HHHHhhhheehhcCCcccCCCCHHHHHHH
Confidence            98 66689999999988642123344444443

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.92  E-value=5.4e-25  Score=193.61  Aligned_cols=80  Identities=28%  Similarity=0.473  Sum_probs=68.2

Q ss_pred             cCCCCCCChHHHH------HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcC
Q 026376          142 LQPMYTLSGGQKS------RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVE  212 (239)
Q Consensus       142 ~~~~~~LSgGqkq------rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d  212 (239)
                      ++++.+|||||||      |+++|++|+.+|++|||||||+|||+..+..+.+.+.+.   +.|||+||||.+ +..+||
T Consensus       243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~~d  321 (339)
T 3qkt_A          243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAAD  321 (339)
T ss_dssp             EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCS
T ss_pred             cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHhCC
Confidence            4678899999999      678888999999999999999999999999988887653   459999999976 456899


Q ss_pred             eEEEEe--CCeE
Q 026376          213 ELWVVS--EGKA  222 (239)
Q Consensus       213 ~i~~l~--~G~i  222 (239)
                      ++++|+  +|..
T Consensus       322 ~~~~l~~~~g~s  333 (339)
T 3qkt_A          322 HVIRISLENGSS  333 (339)
T ss_dssp             EEEEEEEETTEE
T ss_pred             EEEEEEecCCcc
Confidence            999885  4543

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.92  E-value=3.1e-27  Score=204.83  Aligned_cols=179  Identities=17%  Similarity=0.129  Sum_probs=129.3

Q ss_pred             eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------------eEEEEEeeccCCCCCC
Q 026376           45 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------------VRIAVFSQHHVDGLDL  107 (239)
Q Consensus        45 l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------------~~~~~~~q~~~~~~~~  107 (239)
                      +.++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.                 ..++|++|++. ....
T Consensus        90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~-~~~~  168 (302)
T 3b9q_A           90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD-KAKA  168 (302)
T ss_dssp             CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC---CCCH
T ss_pred             ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC-ccCH
Confidence            36789999999999999999999999999999999999999987542                 13788888753 0222


Q ss_pred             CCcHHHHHHHh-CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCCCCHHHHH
Q 026376          108 SSNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH--IILLDEPSNHLDLDAVE  184 (239)
Q Consensus       108 ~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~--llllDEPt~~LD~~~~~  184 (239)
                      ..+....+... ....+    ..+++.+|+.+ ..++++.+||   |||++||||++.+|+  +|+|| ||+|||+....
T Consensus       169 ~~~v~e~l~~~~~~~~d----~~lldt~gl~~-~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~  239 (302)
T 3b9q_A          169 ATVLSKAVKRGKEEGYD----VVLCDTSGRLH-TNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA  239 (302)
T ss_dssp             HHHHHHHHHHHHHTTCS----EEEECCCCCSS-CCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH
T ss_pred             HHHHHHHHHHHHHcCCc----chHHhcCCCCc-chhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH
Confidence            22222222210 01111    12456677753 3456678899   999999999999999  99999 99999987643


Q ss_pred             HHHHHHh-hcCCEEEEEec---------CHHHHhhhcCeEEEEeCCeEEe--eCCChhHHHHHh
Q 026376          185 ALIQGLV-LFQGGILMVSH---------DEHLISGSVEELWVVSEGKATP--FHGTFHDYKKML  236 (239)
Q Consensus       185 ~l~~~l~-~~~~tii~vsH---------d~~~~~~~~d~i~~l~~G~i~~--~~g~~~~~~~~~  236 (239)
                         +.+. ..+.|+|++||         .++.+...+..|.++..|+...  ..-+++.|.+++
T Consensus       240 ---~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~~dl~~f~~~~~~~~l  300 (302)
T 3b9q_A          240 ---REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAI  300 (302)
T ss_dssp             ---HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHH
T ss_pred             ---HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCChhhcccCCHHHHHHHH
Confidence               3344 45779999999         5667777888999999997421  124667776554

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.92  E-value=4.2e-27  Score=213.49  Aligned_cols=180  Identities=13%  Similarity=0.148  Sum_probs=131.8

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------------
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------   91 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------   91 (239)
                      ++++++++++.|+.+..+|+++ |+|.+|++++|+||||||||||+++|+|+.+|++|.|...+.               
T Consensus       130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~  208 (438)
T 2dpy_A          130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP  208 (438)
T ss_dssp             CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred             CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence            4689999999996356799999 999999999999999999999999999999999999987654               


Q ss_pred             ----eEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCC-cccccCCCCCCChHHHHHHHHHHHhccCC
Q 026376           92 ----VRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVT-GNLALQPMYTLSGGQKSRVAFAKITFKKP  166 (239)
Q Consensus        92 ----~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGqkqrv~laral~~~p  166 (239)
                          ..++|++|.... .....+...+...         ..+.....+-. ..+.+ .+..||+|| ||++||   +.+|
T Consensus       209 ~~l~r~i~~v~q~~~~-~~~~~~v~~~~~~---------~ae~~~~~~~~v~~~ld-~l~~lS~g~-qrvslA---l~~p  273 (438)
T 2dpy_A          209 DGRARSVVIAAPADVS-PLLRMQGAAYATR---------IAEDFRDRGQHVLLIMD-SLTRYAMAQ-REIALA---IGEP  273 (438)
T ss_dssp             HHHHTEEEEEECTTSC-HHHHHHHHHHHHH---------HHHHHHTTTCEEEEEEE-CHHHHHHHH-HHHHHH---TTCC
T ss_pred             cccCceEEEEECCCCC-HHHHHHHHHHHHH---------HHHHHHhCCCCHHHHHH-hHHHHHHHH-HHHHHH---hCCC
Confidence                247899985321 0001111111110         00111111100 01112 357899999 999999   8889


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhhcC------C------EEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhH
Q 026376          167 HIILLDEPSNHLDLDAVEALIQGLVLFQ------G------GILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD  231 (239)
Q Consensus       167 ~llllDEPt~~LD~~~~~~l~~~l~~~~------~------tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~  231 (239)
                      ++      |+|||+.....+.+.+.+.+      +      ||+++|||++  ..+||++++|.+|+++ ..+++.+
T Consensus       274 ~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Iv-l~~~~~~  341 (438)
T 2dpy_A          274 PA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIV-LSRRLAE  341 (438)
T ss_dssp             CC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEE-ECHHHHH
T ss_pred             cc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEE-EeCCHHH
Confidence            88      99999999999888886541      3      8999999998  6789999999999986 5565544

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.92  E-value=8.6e-25  Score=193.48  Aligned_cols=85  Identities=18%  Similarity=0.072  Sum_probs=76.0

Q ss_pred             CCCC-CCChHHHHHHHHHHHhc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcC
Q 026376          143 QPMY-TLSGGQKSRVAFAKITF---------KKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVE  212 (239)
Q Consensus       143 ~~~~-~LSgGqkqrv~laral~---------~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d  212 (239)
                      +++. .||||||||++||++|+         .+|+||||||||++||+..+..+++.+.+...|+|++||. +.   .||
T Consensus       260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~~  335 (359)
T 2o5v_A          260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GAA  335 (359)
T ss_dssp             EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TCS
T ss_pred             cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cCC
Confidence            4566 79999999999999999         8999999999999999999999999998876789999995 33   799


Q ss_pred             eEEEEeCCeEEeeCCChhHH
Q 026376          213 ELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       213 ~i~~l~~G~i~~~~g~~~~~  232 (239)
                      ++++|++|++. ..|+++++
T Consensus       336 ~i~~l~~G~i~-~~g~~~~~  354 (359)
T 2o5v_A          336 LTLRAQAGRFT-PVADEEMQ  354 (359)
T ss_dssp             EEEEEETTEEE-ECCCTTTS
T ss_pred             EEEEEECCEEE-ecCCHHHH
Confidence            99999999997 67887764

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.92  E-value=3.7e-28  Score=201.27  Aligned_cols=166  Identities=15%  Similarity=0.141  Sum_probs=105.1

Q ss_pred             ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecC-----------ceEEEEEeeccCCCCCCC--C
Q 026376           43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA-----------KVRIAVFSQHHVDGLDLS--S  109 (239)
Q Consensus        43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~-----------~~~~~~~~q~~~~~~~~~--~  109 (239)
                      ..|+||||+|++|++++|+||||||||||+++|+|++ |  |+|.+..           ...++|++|++.......  .
T Consensus        11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   87 (218)
T 1z6g_A           11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNE   87 (218)
T ss_dssp             -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTT
T ss_pred             ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhcc
Confidence            3689999999999999999999999999999999998 6  8887621           123566666532100000  0


Q ss_pred             cHHHH--HHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHH-----HHHhccCCCEEEEeCCCCCCCHHH
Q 026376          110 NPLLY--MMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF-----AKITFKKPHIILLDEPSNHLDLDA  182 (239)
Q Consensus       110 ~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~l-----aral~~~p~llllDEPt~~LD~~~  182 (239)
                      ..+.+  +.....+.....+.++++...+.  ..+   .+|||||+||++|     |++|+.+|++++|||||+++|..+
T Consensus        88 ~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~--il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~  162 (218)
T 1z6g_A           88 DFLEYDNYANNFYGTLKSEYDKAKEQNKIC--LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTEN  162 (218)
T ss_dssp             CEEEEEEETTEEEEEEHHHHHHHHHTTCEE--EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCC
T ss_pred             chhhhhhcccccCCCcHHHHHHHHhCCCcE--EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCC
Confidence            00000  00000112344567777764431  222   5899999999999     899999999999999999999877


Q ss_pred             HHHHHHHHhh----------cCCEEEEEecCHHHHhhhcCeEEE
Q 026376          183 VEALIQGLVL----------FQGGILMVSHDEHLISGSVEELWV  216 (239)
Q Consensus       183 ~~~l~~~l~~----------~~~tii~vsHd~~~~~~~~d~i~~  216 (239)
                      ...+.+.+.+          ...+.|+++||++.+...+++++.
T Consensus       163 ~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii~  206 (218)
T 1z6g_A          163 QEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYLL  206 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHHH
Confidence            6666555532          234688899999888877777654

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.92  E-value=1.2e-25  Score=221.50  Aligned_cols=165  Identities=16%  Similarity=0.211  Sum_probs=116.7

Q ss_pred             CCeEEEEe-----eEEEcCCCCceeeeeeEEEeC-------CCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceE
Q 026376           26 PPIISFSD-----ASFGYPGGPILFKNLNFGIDL-------DSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR   93 (239)
Q Consensus        26 ~~~l~~~~-----l~~~y~~~~~~l~~isl~i~~-------Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~   93 (239)
                      .++|+++|     |++.|.++..+++|++|++.+       |++++|+||||||||||||+| |++.+-         ..
T Consensus       748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~---------aq  817 (1022)
T 2o8b_B          748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM---------AQ  817 (1022)
T ss_dssp             CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH---------HT
T ss_pred             CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH---------hh
Confidence            45799999     999995456799999999987       999999999999999999999 998752         12


Q ss_pred             EE-EEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376           94 IA-VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD  172 (239)
Q Consensus        94 ~~-~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD  172 (239)
                      +| |+||+.. .+.+....                   +..+|+.+.. .+..+++|+++++ +++|++++.+|+++|||
T Consensus       818 iG~~Vpq~~~-~l~v~d~I-------------------~~rig~~d~~-~~~~stf~~em~~-~a~al~la~~~sLlLLD  875 (1022)
T 2o8b_B          818 MGCYVPAEVC-RLTPIDRV-------------------FTRLGASDRI-MSGESTFFVELSE-TASILMHATAHSLVLVD  875 (1022)
T ss_dssp             TTCCEESSEE-EECCCSBE-------------------EEECC----------CHHHHHHHH-HHHHHHHCCTTCEEEEE
T ss_pred             eeEEeccCcC-CCCHHHHH-------------------HHHcCCHHHH-hhchhhhHHHHHH-HHHHHHhCCCCcEEEEE
Confidence            44 7888642 11111111                   1234443322 2345678887765 99999999999999999


Q ss_pred             CCCCCCCHHHH----HHHHHHHhhc-CCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376          173 EPSNHLDLDAV----EALIQGLVLF-QGGILMVSHDEHLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       173 EPt~~LD~~~~----~~l~~~l~~~-~~tii~vsHd~~~~~~~~d~i~~l~~G~i~  223 (239)
                      |||+|+|+...    ..+++.+.+. +.++|++||+.+++..+||++.++ +|++.
T Consensus       876 Ep~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~  930 (1022)
T 2o8b_B          876 ELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA  930 (1022)
T ss_dssp             CTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred             CCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence            99999998753    2455666554 779999999999999999998876 47765

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.92  E-value=4.3e-27  Score=207.58  Aligned_cols=181  Identities=14%  Similarity=0.160  Sum_probs=126.8

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce--------------
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--------------   92 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~--------------   92 (239)
                      ++++++++++.|+.+..+++++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|...+..              
T Consensus        44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~  122 (347)
T 2obl_A           44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQS  122 (347)
T ss_dssp             CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHH
T ss_pred             CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhh
Confidence            4689999999996456789999 9999999999999999999999999999999999988765421              


Q ss_pred             ----EEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 026376           93 ----RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI  168 (239)
Q Consensus        93 ----~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~l  168 (239)
                          .+.+++|...       .....+....   ....+.+.+...+-.-...-..+..||+|| ||+++|   +.+|++
T Consensus       123 ~~~~~v~~~~~~~~-------~~~~r~~~~~---~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~  188 (347)
T 2obl_A          123 TLSKCVLVVTTSDR-------PALERMKAAF---TATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV  188 (347)
T ss_dssp             HHTTEEEEEECTTS-------CHHHHHHHHH---HHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC
T ss_pred             hhhceEEEEECCCC-------CHHHHHHHHH---HHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc
Confidence                1233333210       0111100000   000011111111110000113568999999 899999   688887


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHhhc-----CC-----EEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhH
Q 026376          169 ILLDEPSNHLDLDAVEALIQGLVLF-----QG-----GILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD  231 (239)
Q Consensus       169 lllDEPt~~LD~~~~~~l~~~l~~~-----~~-----tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~  231 (239)
                            |+|||+.....+.+.+.+.     +.     ||+++|||++  ..+||+++.+.+|+++ .+++.++
T Consensus       189 ------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Iv-l~~~l~~  252 (347)
T 2obl_A          189 ------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIV-LTRELAE  252 (347)
T ss_dssp             ------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEE-BCHHHHT
T ss_pred             ------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEE-EeCCHHH
Confidence                  9999999999988888653     33     7999999998  6789999999999997 5665543

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.91  E-value=3.2e-28  Score=211.94  Aligned_cols=176  Identities=14%  Similarity=0.050  Sum_probs=127.9

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEE-----------------------EeCCCEEEEECCCCCcHHHHHHHHhcCcCCCc
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFG-----------------------IDLDSRIAMVGPNGIGKSTILKLIAGELQPSS   83 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~-----------------------i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~   83 (239)
                      ..|++++|++.|.   ++++++++.                       +++|+++||+||||||||||+++|+|+++|+.
T Consensus        42 ~~i~~~~v~~~y~---p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~  118 (312)
T 3aez_A           42 EQIDLLEVEEVYL---PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWD  118 (312)
T ss_dssp             CCCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTST
T ss_pred             CeEEeeehhhhhh---hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccC
Confidence            3689999999993   566777764                       89999999999999999999999999999987


Q ss_pred             eeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHh--C--C-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHH
Q 026376           84 GTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRC--F--P-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAF  158 (239)
Q Consensus        84 G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~--~--~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~l  158 (239)
                      |.      ..+++++|+....  . .+...+....  +  + ..+.+.+.++++.++ .+ ..+.++..|||||+||+++
T Consensus       119 G~------~~v~~v~qd~~~~--~-~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~~-~~~~~~~~lS~G~~qRv~~  187 (312)
T 3aez_A          119 HH------PRVDLVTTDGFLY--P-NAELQRRNLMHRKGFPESYNRRALMRFVTSVK-SG-SDYACAPVYSHLHYDIIPG  187 (312)
T ss_dssp             TC------CCEEEEEGGGGBC--C-HHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-TT-CSCEEEEEEETTTTEEEEE
T ss_pred             CC------CeEEEEecCccCC--c-ccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-CC-cccCCcccCChhhhhhhhh
Confidence            64      4589999986421  1 1333332111  0  0 123456778888887 33 3345678999999999999


Q ss_pred             HHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHH-hhhcCeEEEEeCCe
Q 026376          159 AKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLI-SGSVEELWVVSEGK  221 (239)
Q Consensus       159 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~-~~~~d~i~~l~~G~  221 (239)
                      |++++.+|+|||||||+..+|+..     ..+.+.-..+|+|+|+.+.. .+..+|.+.+.++.
T Consensus       188 a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~  246 (312)
T 3aez_A          188 AEQVVRHPDILILEGLNVLQTGPT-----LMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTA  246 (312)
T ss_dssp             EEEEECSCSEEEEECTTTTCCCSS-----CCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred             HHHhccCCCEEEECCccccCCcch-----HHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999998522     12333334578888888764 34456665555543

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.91  E-value=2.2e-25  Score=206.66  Aligned_cols=169  Identities=14%  Similarity=0.055  Sum_probs=122.5

Q ss_pred             eEEEEeeEEEcCCCCceeeee-eEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCC
Q 026376           28 IISFSDASFGYPGGPILFKNL-NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLD  106 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~i-sl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~  106 (239)
                      .+++++++..|++    |+.+ +..|.+|++++|+||||||||||+++++|...|. |+      ..+.+.+|+...   
T Consensus       257 ~~~~~~l~~g~~~----ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~------~vi~~~~ee~~~---  322 (525)
T 1tf7_A          257 RSSNVRVSSGVVR----LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE------RAILFAYEESRA---  322 (525)
T ss_dssp             CCCCCEECCSCHH----HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC------CEEEEESSSCHH---
T ss_pred             ccccceeecChHH----HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC------CEEEEEEeCCHH---
Confidence            4566777765532    2322 4599999999999999999999999999999885 43      123455554310   


Q ss_pred             CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH-----
Q 026376          107 LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD-----  181 (239)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~-----  181 (239)
                         ...... ... +.+.   .+ +...|+. ...+.++.+|||||+||+++|+++..+|++||+| ||++||..     
T Consensus       323 ---~l~~~~-~~~-g~~~---~~-~~~~g~~-~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~  391 (525)
T 1tf7_A          323 ---QLLRNA-YSW-GMDF---EE-MERQNLL-KIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNA  391 (525)
T ss_dssp             ---HHHHHH-HTT-SCCH---HH-HHHTTSE-EECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHH
T ss_pred             ---HHHHHH-HHc-CCCH---HH-HHhCCCE-EEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHH
Confidence               111111 111 2222   22 2234543 2445677899999999999999999999999999 99999998     


Q ss_pred             HHHHHH---HHHhhcCCEEEEEecCH----------HHHhhhcCeEEEEeCCe
Q 026376          182 AVEALI---QGLVLFQGGILMVSHDE----------HLISGSVEELWVVSEGK  221 (239)
Q Consensus       182 ~~~~l~---~~l~~~~~tii~vsHd~----------~~~~~~~d~i~~l~~G~  221 (239)
                      .+..+.   +.+++.+.|||+|||+.          ..+..+||++++|++|+
T Consensus       392 ~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge  444 (525)
T 1tf7_A          392 FRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE  444 (525)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence            666554   44556678999999999          78888999999998876

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.91  E-value=3.5e-28  Score=199.49  Aligned_cols=163  Identities=10%  Similarity=0.007  Sum_probs=95.4

Q ss_pred             CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEec-------CceEEEEEeeccCCCCC--CCCcHH
Q 026376           42 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS-------AKVRIAVFSQHHVDGLD--LSSNPL  112 (239)
Q Consensus        42 ~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~-------~~~~~~~~~q~~~~~~~--~~~~~~  112 (239)
                      ..+++|  .+|++|++++|+||||||||||+|+|+|+++...+.+...       ....++|++|++.....  ...+..
T Consensus         9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~   86 (207)
T 1znw_A            9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELL   86 (207)
T ss_dssp             ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred             CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCce
Confidence            356777  7999999999999999999999999999986332221111       01246788876421000  000000


Q ss_pred             HH--HHH--hCCCCcHHH----HHHH------HHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 026376          113 LY--MMR--CFPGVPEQK----LRAH------LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL  178 (239)
Q Consensus       113 ~~--~~~--~~~~~~~~~----~~~~------l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~L  178 (239)
                      ..  ...  .........    +.+.      ++.+++. ...++.+..||           +|+.+|++++|||||+++
T Consensus        87 ~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~lS-----------~l~~~p~~~~LDep~~~l  154 (207)
T 1znw_A           87 EWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGAR-AIKKTMPEAVT-----------VFLAPPSWQDLQARLIGR  154 (207)
T ss_dssp             EEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHH-HHHHHCTTSEE-----------EEEECSCHHHHHHHHHTT
T ss_pred             eehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHH-HHHHhcCCcEE-----------EEEECCCHHHHHHHHHhc
Confidence            00  000  000111222    2222      3334442 23345566777           899999999999999998


Q ss_pred             ----CHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEe
Q 026376          179 ----DLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVS  218 (239)
Q Consensus       179 ----D~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~  218 (239)
                          |+..+..+.+.+.+    .+.|+|+||||++++..+||++++|.
T Consensus       155 ~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~  202 (207)
T 1znw_A          155 GTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT  202 (207)
T ss_dssp             SCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred             CCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence                66677766655543    35699999999999999999999884

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.91  E-value=7.7e-26  Score=200.04  Aligned_cols=178  Identities=17%  Similarity=0.139  Sum_probs=128.8

Q ss_pred             eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------------eEEEEEeeccCCCCCCC
Q 026376           46 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------------VRIAVFSQHHVDGLDLS  108 (239)
Q Consensus        46 ~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------------~~~~~~~q~~~~~~~~~  108 (239)
                      .++||++++|++++|+||||||||||+++|+|+++|++|+|.+.+.                 ..++|++|++.. ....
T Consensus       148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~-~~p~  226 (359)
T 2og2_A          148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDK-AKAA  226 (359)
T ss_dssp             CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSS-CCHH
T ss_pred             CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccc-cChh
Confidence            4689999999999999999999999999999999999999987542                 137888887520 1221


Q ss_pred             CcHHHHHHHh-CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCCCCHHHHHH
Q 026376          109 SNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH--IILLDEPSNHLDLDAVEA  185 (239)
Q Consensus       109 ~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~--llllDEPt~~LD~~~~~~  185 (239)
                      .+....+... ....+    ..+++.+|+.+ ..++.+.+||   |||++||||++.+|+  +|+|| ||+|||+.... 
T Consensus       227 ~tv~e~l~~~~~~~~d----~~lldt~Gl~~-~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~-  296 (359)
T 2og2_A          227 TVLSKAVKRGKEEGYD----VVLCDTSGRLH-TNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA-  296 (359)
T ss_dssp             HHHHHHHHHHHHTTCS----EEEEECCCCSS-CCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH-
T ss_pred             hhHHHHHHHHHhCCCH----HHHHHhcCCCh-hhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH-
Confidence            2222222210 01111    12456677754 3456678899   999999999999999  99999 99999987653 


Q ss_pred             HHHHHh-hcCCEEEEEec---------CHHHHhhhcCeEEEEeCCeEEe--eCCChhHHHHHh
Q 026376          186 LIQGLV-LFQGGILMVSH---------DEHLISGSVEELWVVSEGKATP--FHGTFHDYKKML  236 (239)
Q Consensus       186 l~~~l~-~~~~tii~vsH---------d~~~~~~~~d~i~~l~~G~i~~--~~g~~~~~~~~~  236 (239)
                        +.+. ..+.|+|++||         .+..+...+..|..+..|+...  ..-+++.|.+++
T Consensus       297 --~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~~Dl~~f~~~~~~~~l  357 (359)
T 2og2_A          297 --REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFDPEAFVNAI  357 (359)
T ss_dssp             --HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHH
T ss_pred             --HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCChHhccCCCHHHHHHHH
Confidence              3343 45789999999         4667777788999999997421  124667776654

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.89  E-value=1.3e-23  Score=180.86  Aligned_cols=172  Identities=15%  Similarity=0.114  Sum_probs=106.1

Q ss_pred             ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCce-eEEe-cCce-------EEEEEeeccCCCCCCCCcHHH
Q 026376           43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG-TVFR-SAKV-------RIAVFSQHHVDGLDLSSNPLL  113 (239)
Q Consensus        43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G-~i~~-~~~~-------~~~~~~q~~~~~~~~~~~~~~  113 (239)
                      .+|+++++.+.+|++++|+||||||||||+++|+|...|++| .|.+ ....       ++.++.+.    ..+......
T Consensus        23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~----~~~~~~~~l   98 (296)
T 1cr0_A           23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNR----VRLRQSDSL   98 (296)
T ss_dssp             TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTT----CCGGGCHHH
T ss_pred             HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcC----CChhhcccc
Confidence            478999999999999999999999999999999999999877 5532 2110       00000000    000000000


Q ss_pred             HHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHH-HHHHHHHHHhccCCCEEEEeCCCC---C---CCH-HHHHH
Q 026376          114 YMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQ-KSRVAFAKITFKKPHIILLDEPSN---H---LDL-DAVEA  185 (239)
Q Consensus       114 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq-kqrv~laral~~~p~llllDEPt~---~---LD~-~~~~~  185 (239)
                      ...........+.+.++++...+  .. ...+..+|.+| +||+. |+++..+|+++|+||||+   +   +|. .....
T Consensus        99 ~~~~~~~~~~~~~~~~~l~~~~l--~i-~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~  174 (296)
T 1cr0_A           99 KREIIENGKFDQWFDELFGNDTF--HL-YDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDN  174 (296)
T ss_dssp             HHHHHHHTHHHHHHHHHHSSSCE--EE-ECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHH
T ss_pred             ccCCCCHHHHHHHHHHHhccCCE--EE-ECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHH
Confidence            00000000001122333333233  12 22346789999 66666 999999999999999999   5   454 45555


Q ss_pred             HHHHHh----hcCCEEEEEecCH--H--------------------HHhhhcCeEEEEeCCeE
Q 026376          186 LIQGLV----LFQGGILMVSHDE--H--------------------LISGSVEELWVVSEGKA  222 (239)
Q Consensus       186 l~~~l~----~~~~tii~vsHd~--~--------------------~~~~~~d~i~~l~~G~i  222 (239)
                      +.+.|+    +.+.|||++||+.  +                    .+.++||+|++|++|+.
T Consensus       175 i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~  237 (296)
T 1cr0_A          175 LMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ  237 (296)
T ss_dssp             HHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred             HHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence            655553    3477999999995  4                    77889999999998864

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.89  E-value=3.5e-24  Score=208.93  Aligned_cols=155  Identities=17%  Similarity=0.149  Sum_probs=109.1

Q ss_pred             CeEEEEeeEEEcC----CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHH--------hcCcCCCceeEEecCceEE
Q 026376           27 PIISFSDASFGYP----GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI--------AGELQPSSGTVFRSAKVRI   94 (239)
Q Consensus        27 ~~l~~~~l~~~y~----~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l--------~Gl~~p~~G~i~~~~~~~~   94 (239)
                      ..+.+++...-+-    +...+++|++|++.+|++++|+||||||||||||++        +|...|.++..       +
T Consensus       630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------~  702 (934)
T 3thx_A          630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------V  702 (934)
T ss_dssp             CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-------E
T ss_pred             cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-------c
Confidence            3577777543331    234688999999999999999999999999999999        56555543321       1


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHh--ccCCCEEEEe
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT--FKKPHIILLD  172 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral--~~~p~llllD  172 (239)
                      +.+                              .+++..+|+.+    .....+|+|++++..+|+++  +.+|+++|||
T Consensus       703 ~~~------------------------------d~i~~~ig~~d----~l~~~lStf~~e~~~~a~il~~a~~~sLlLLD  748 (934)
T 3thx_A          703 SIV------------------------------DCILARVGAGD----SQLKGVSTFMAEMLETASILRSATKDSLIIID  748 (934)
T ss_dssp             ECC------------------------------SEEEEECC-------------CHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             hHH------------------------------HHHHHhcCchh----hHHHhHhhhHHHHHHHHHHHHhccCCcEEEEe
Confidence            100                              01222344332    22356888888888888888  9999999999


Q ss_pred             CCCCCCCHHHHHHH----HHHHhh-cCCEEEEEecCHHHHhhhcCeEEEEeCCeEE
Q 026376          173 EPSNHLDLDAVEAL----IQGLVL-FQGGILMVSHDEHLISGSVEELWVVSEGKAT  223 (239)
Q Consensus       173 EPt~~LD~~~~~~l----~~~l~~-~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~  223 (239)
                      |||+|+|+.....+    ++.+.+ .+.++|++||+.+.. .+||++..+.+|++.
T Consensus       749 Ep~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~v~ng~v~  803 (934)
T 3thx_A          749 ELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIPTVNNLHVT  803 (934)
T ss_dssp             SCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTTEEEEEEE
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccceeEeeEEE
Confidence            99999999865544    555654 477999999997766 589999889988875

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.89  E-value=5.9e-25  Score=186.85  Aligned_cols=141  Identities=18%  Similarity=0.198  Sum_probs=102.0

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCC-ceeEEecCceEEEEEeeccCCCCC
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-SGTVFRSAKVRIAVFSQHHVDGLD  106 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~-~G~i~~~~~~~~~~~~q~~~~~~~  106 (239)
                      +++++++++.     .+|+++|  +++|++++|+||||||||||+++|+|+++|+ +|+|...+.. +.|++|....   
T Consensus         5 ~~~l~~l~~~-----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~-i~~~~~~~~~---   73 (261)
T 2eyu_A            5 IPEFKKLGLP-----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-IEYVFKHKKS---   73 (261)
T ss_dssp             -CCGGGSSCC-----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS-CCSCCCCSSS---
T ss_pred             CCChHHCCCH-----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc-ceeecCCcce---
Confidence            3466777642     4789999  9999999999999999999999999999998 9999765431 2232222100   


Q ss_pred             CCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH
Q 026376          107 LSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEAL  186 (239)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l  186 (239)
                                 .   ...       ..+++..       ..|      |++||++|..+|++|++||||   |+++...+
T Consensus        74 -----------~---v~q-------~~~gl~~-------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~  116 (261)
T 2eyu_A           74 -----------I---VNQ-------REVGEDT-------KSF------ADALRAALREDPDVIFVGEMR---DLETVETA  116 (261)
T ss_dssp             -----------E---EEE-------EEBTTTB-------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHH
T ss_pred             -----------e---eeH-------HHhCCCH-------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH
Confidence                       0   000       1233321       122      899999999999999999999   99987776


Q ss_pred             HHHHhhcCCEEEEEecCHHHHhhhcCeEEEEe
Q 026376          187 IQGLVLFQGGILMVSHDEHLISGSVEELWVVS  218 (239)
Q Consensus       187 ~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~  218 (239)
                      ++.. ..+.+|+++||+.+ +...|||++.|.
T Consensus       117 l~~~-~~g~~vl~t~H~~~-~~~~~dri~~l~  146 (261)
T 2eyu_A          117 LRAA-ETGHLVFGTLHTNT-AIDTIHRIVDIF  146 (261)
T ss_dssp             HHHH-HTTCEEEEEECCSS-HHHHHHHHHHTS
T ss_pred             HHHH-ccCCEEEEEeCcch-HHHHHHHHhhhc
Confidence            6654 45779999999987 455778765553

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.89  E-value=1.7e-26  Score=214.19  Aligned_cols=167  Identities=10%  Similarity=0.009  Sum_probs=109.4

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeE-EEeCCCEEEEECCCCCcHHHHHHH--HhcCcCCCceeEEecCce----------EE
Q 026376           28 IISFSDASFGYPGGPILFKNLNF-GIDLDSRIAMVGPNGIGKSTILKL--IAGELQPSSGTVFRSAKV----------RI   94 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl-~i~~Ge~~~iiG~NGsGKSTLl~~--l~Gl~~p~~G~i~~~~~~----------~~   94 (239)
                      +++.+++.+.. ++..+|+++|| .|++|++++|+||||||||||+++  ++|+.+|++|.|++++..          .+
T Consensus        12 ~~~~~~~~~~~-~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~   90 (525)
T 1tf7_A           12 NSEHQAIAKMR-TMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSF   90 (525)
T ss_dssp             --CCSSCCEEC-CCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGG
T ss_pred             Ccccccccccc-CCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHc
Confidence            45666665544 55679999999 999999999999999999999999  789999999999876531          24


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc-cCCCEEEEeC
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF-KKPHIILLDE  173 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~-~~p~llllDE  173 (239)
                      +|++|++.....+..      . .... . .+..++++              .+.-++ +.-.++.+|. .+|++++|||
T Consensus        91 g~~~q~~~~~~~l~~------~-~~~~-~-~~~~~~l~--------------~~~l~~-~~~~~~~~LS~g~~~~lilDe  146 (525)
T 1tf7_A           91 GWDLAKLVDEGKLFI------L-DASP-D-PEGQEVVG--------------GFDLSA-LIERINYAIQKYRARRVSIDS  146 (525)
T ss_dssp             TCCHHHHHHTTSEEE------E-ECCC-C-SSCCSCCS--------------SHHHHH-HHHHHHHHHHHHTCSEEEEEC
T ss_pred             CCChHHhhccCcEEE------E-ecCc-c-cchhhhhc--------------ccCHHH-HHHHHHHHHHHcCCCEEEECC
Confidence            444444321000000      0 0000 0 00001111              222222 2333344442 4689999999


Q ss_pred             CCCC-----CCHHHHHHHHHHH---hhcCCEEEEEecCHHHH---------hhhcCeEEEEeC
Q 026376          174 PSNH-----LDLDAVEALIQGL---VLFQGGILMVSHDEHLI---------SGSVEELWVVSE  219 (239)
Q Consensus       174 Pt~~-----LD~~~~~~l~~~l---~~~~~tii~vsHd~~~~---------~~~~d~i~~l~~  219 (239)
                      ||+.     ||+..+..+.+.+   ++.+.|||++||+++++         ..+||+|++|++
T Consensus       147 ~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~  209 (525)
T 1tf7_A          147 VTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN  209 (525)
T ss_dssp             STTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence            9984     5888877666554   45578999999999884         556999999988

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.88  E-value=3.3e-25  Score=189.27  Aligned_cols=138  Identities=12%  Similarity=0.102  Sum_probs=86.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------eEEEEEeeccCCCC--CCCCcHHHHHHHhCCCCcHHH
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------VRIAVFSQHHVDGL--DLSSNPLLYMMRCFPGVPEQK  126 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------~~~~~~~q~~~~~~--~~~~~~~~~~~~~~~~~~~~~  126 (239)
                      .++|+||||||||||+|+|+|+..|++|+|.+++.        ..+++++|+.....  ++..++... .........+.
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g-~~~~~~~~~~~   82 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFG-DQINNENCWEP   82 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC---CCSBCTTCSHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhh-hhcccHHHHHH
Confidence            48999999999999999999999999999987653        46899999753211  111121110 00011112233


Q ss_pred             HHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHH
Q 026376          127 LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEH  205 (239)
Q Consensus       127 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~  205 (239)
                      +.+++.     ....+..+.+||||||||+++|||++.   ++++|||+++||+.. ..+++.+.+. .+||+|.|..+
T Consensus        83 i~~~~~-----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~~l~~L~~~-~~vI~Vi~K~D  151 (270)
T 3sop_A           83 IEKYIN-----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LEFMKHLSKV-VNIIPVIAKAD  151 (270)
T ss_dssp             HHHHHH-----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HHHHHHHHTT-SEEEEEETTGG
T ss_pred             HHHHHH-----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH-HHHHHHHHhc-CcEEEEEeccc
Confidence            444443     123445678999999999999999886   999999999999987 4456667665 78888887654

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.88  E-value=1.2e-22  Score=197.43  Aligned_cols=105  Identities=28%  Similarity=0.389  Sum_probs=91.5

Q ss_pred             HHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEec
Q 026376          128 RAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH--IILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSH  202 (239)
Q Consensus       128 ~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~--llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsH  202 (239)
                      .+.|..+|+.....++++.+|||||||||+|||||+.+|+  +|||||||+|||+....++++.|+++   +.|||+|||
T Consensus       445 ~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtH  524 (916)
T 3pih_A          445 LEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH  524 (916)
T ss_dssp             HHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECC
T ss_pred             HHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence            3466778886544578999999999999999999999877  99999999999999999988887654   569999999


Q ss_pred             CHHHHhhhcCeEEEE------eCCeEEeeCCChhHHHH
Q 026376          203 DEHLISGSVEELWVV------SEGKATPFHGTFHDYKK  234 (239)
Q Consensus       203 d~~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~  234 (239)
                      |++++.. ||+|++|      ++|+++ +.|+++++.+
T Consensus       525 d~~~~~~-aD~ii~lgpgag~~~G~iv-~~G~~~e~~~  560 (916)
T 3pih_A          525 DEEVIRN-ADHIIDIGPGGGTNGGRVV-FQGTVDELLK  560 (916)
T ss_dssp             CHHHHHT-CSEEEEEESSSGGGCSEEE-EEECHHHHHH
T ss_pred             CHHHHHh-CCEEEEEcCCcccCCCEEE-Eeechhhhhc
Confidence            9999875 9999999      889987 7899998864

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.88  E-value=3.1e-24  Score=180.33  Aligned_cols=161  Identities=15%  Similarity=0.125  Sum_probs=96.1

Q ss_pred             CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEec-CceEEEEEeeccCCCCCCCCcHHHHHH--
Q 026376           40 GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS-AKVRIAVFSQHHVDGLDLSSNPLLYMM--  116 (239)
Q Consensus        40 ~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~-~~~~~~~~~q~~~~~~~~~~~~~~~~~--  116 (239)
                      +++.+|+|+||++++|+++||+||||||||||+++|+|++    |.+.++ ....++|++|+... ..+  +......  
T Consensus        10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~~~-~~l--~~~~~~~~~   82 (245)
T 2jeo_A           10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDRFY-KVL--TAEQKAKAL   82 (245)
T ss_dssp             -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGGGB-CCC--CHHHHHHHH
T ss_pred             CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCcCc-ccc--CHhHhhhhh
Confidence            4457899999999999999999999999999999999976    433221 12358899998521 122  2222211  


Q ss_pred             Hh-CC-----CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 026376          117 RC-FP-----GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGL  190 (239)
Q Consensus       117 ~~-~~-----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l  190 (239)
                      .. +.     ..+.+.+.+.++.+.  . ....++..||+||+||+++ ++++.+|+++|+|||....+..-    .+  
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~L~~l~--~-~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~l----~~--  152 (245)
T 2jeo_A           83 KGQYNFDHPDAFDNDLMHRTLKNIV--E-GKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQEI----RD--  152 (245)
T ss_dssp             TTCCCTTSGGGBCHHHHHHHHHHHH--T-TCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHHH----HT--
T ss_pred             ccCCCCCCcccccHHHHHHHHHHHH--C-CCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHHH----HH--
Confidence            11 11     012234455565442  1 2345678999999999988 68889999999999998887641    11  


Q ss_pred             hhcCCEEEEEecC-HHHHhhhcCeEEEEeCCe
Q 026376          191 VLFQGGILMVSHD-EHLISGSVEELWVVSEGK  221 (239)
Q Consensus       191 ~~~~~tii~vsHd-~~~~~~~~d~i~~l~~G~  221 (239)
                       ..+.+|+++||+ ......+++++   ++|+
T Consensus       153 -~~~~~i~v~th~~~~~~r~~~r~~---~~G~  180 (245)
T 2jeo_A          153 -MFHLRLFVDTDSDVRLSRRVLRDV---RRGR  180 (245)
T ss_dssp             -TCSEEEEEECCHHHHHHHHHHHHT---C---
T ss_pred             -hcCeEEEEECCHHHHHHHHHHHHH---HcCC
Confidence             135689999997 44445555544   5564

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.87  E-value=2.2e-22  Score=156.97  Aligned_cols=81  Identities=25%  Similarity=0.435  Sum_probs=70.5

Q ss_pred             ccCCCCCCChHHHHHHHHH------HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhc
Q 026376          141 ALQPMYTLSGGQKSRVAFA------KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSV  211 (239)
Q Consensus       141 ~~~~~~~LSgGqkqrv~la------ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~  211 (239)
                      .++++.+||||||||++||      |||+.+|+++||||||++||+.++..+.+.+.+.   +.|||+||||.+ +..+|
T Consensus        51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~  129 (148)
T 1f2t_B           51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAA  129 (148)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGC
T ss_pred             ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhC
Confidence            3568899999999999876      8999999999999999999999999998888654   469999999995 56799


Q ss_pred             CeEEEE--eCCeE
Q 026376          212 EELWVV--SEGKA  222 (239)
Q Consensus       212 d~i~~l--~~G~i  222 (239)
                      |++++|  ++|..
T Consensus       130 d~ii~l~~~~g~s  142 (148)
T 1f2t_B          130 DHVIRISLENGSS  142 (148)
T ss_dssp             SEEEEEEEETTEE
T ss_pred             CEEEEEEcCCCeE
Confidence            999999  45643

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.87  E-value=5.8e-23  Score=197.08  Aligned_cols=145  Identities=19%  Similarity=0.184  Sum_probs=107.0

Q ss_pred             CeEEEEeeEEEcC--CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC-CCceeEEecCceEEEEEeeccCC
Q 026376           27 PIISFSDASFGYP--GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-PSSGTVFRSAKVRIAVFSQHHVD  103 (239)
Q Consensus        27 ~~l~~~~l~~~y~--~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-p~~G~i~~~~~~~~~~~~q~~~~  103 (239)
                      ..+.+++...-.-  ++..+++|+||+   |++++|+||||||||||||+|+|+.. ++.|.+.......+++++|-.  
T Consensus       549 ~~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~i~--  623 (765)
T 1ewq_A          549 DRLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIY--  623 (765)
T ss_dssp             SSEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEE--
T ss_pred             CcEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHHhh--
Confidence            3577777632220  235689999999   99999999999999999999999874 677875432233344444311  


Q ss_pred             CCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHh--ccCCCEEEEeCC---CCCC
Q 026376          104 GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT--FKKPHIILLDEP---SNHL  178 (239)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral--~~~p~llllDEP---t~~L  178 (239)
                                                  ..++..+.    ....+|+|+++++.+|+++  +.+|+++|||||   |++|
T Consensus       624 ----------------------------~~~~~~d~----l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~l  671 (765)
T 1ewq_A          624 ----------------------------TRIGASDD----LAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSL  671 (765)
T ss_dssp             ----------------------------EECCC----------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHH
T ss_pred             ----------------------------ccCCHHHH----HHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCc
Confidence                                        11111111    1235799999999999999  999999999999   9999


Q ss_pred             CHHHH-HHHHHHHhhcCCEEEEEecCHHHHh
Q 026376          179 DLDAV-EALIQGLVLFQGGILMVSHDEHLIS  208 (239)
Q Consensus       179 D~~~~-~~l~~~l~~~~~tii~vsHd~~~~~  208 (239)
                      |..+. ..+++.+.+.+.++|++||+.++..
T Consensus       672 D~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~  702 (765)
T 1ewq_A          672 DGVAIATAVAEALHERRAYTLFATHYFELTA  702 (765)
T ss_dssp             HHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred             CHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence            99876 4688888777789999999998864

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.87  E-value=5.1e-24  Score=172.82  Aligned_cols=141  Identities=21%  Similarity=0.197  Sum_probs=98.0

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecC---------ceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHH
Q 026376           55 DSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA---------KVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQ  125 (239)
Q Consensus        55 Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~---------~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (239)
                      |++++|+||||||||||+++|+|+++ ++| |.+++         ...++|++|+.. ..   ...              
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~-g~---~~~--------------   60 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTLS-GT---RGP--------------   60 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEETT-SC---EEE--------------
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEecc-cc---eeh--------------
Confidence            78999999999999999999999999 889 76543         235788888751 10   000              


Q ss_pred             HHHHHHHhcCCCc------ccccCCCCCCChHHHHHH-HHHH---HhccCCCEEEEeC--CCCCCCHHHHHHHHHHHhhc
Q 026376          126 KLRAHLGSFGVTG------NLALQPMYTLSGGQKSRV-AFAK---ITFKKPHIILLDE--PSNHLDLDAVEALIQGLVLF  193 (239)
Q Consensus       126 ~~~~~l~~~~l~~------~~~~~~~~~LSgGqkqrv-~lar---al~~~p~llllDE--Pt~~LD~~~~~~l~~~l~~~  193 (239)
                           +..+++..      ....++...+|+|||+++ ++++   |++.+|++||+||  |++.+|......+.+.+.+.
T Consensus        61 -----l~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~  135 (189)
T 2i3b_A           61 -----LSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP  135 (189)
T ss_dssp             -----EEECCCCCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS
T ss_pred             -----hhcccccCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCC
Confidence                 00111110      122344567999999988 4454   6899999999999  99999999888888888765


Q ss_pred             CCEEE---EEecCH--HHHhhhcCeEEEEeCCeEEe
Q 026376          194 QGGIL---MVSHDE--HLISGSVEELWVVSEGKATP  224 (239)
Q Consensus       194 ~~tii---~vsHd~--~~~~~~~d~i~~l~~G~i~~  224 (239)
                      ..+|+   .||||.  .++++++    .+++|++..
T Consensus       136 ~~~ilgti~vsh~~~~~~vd~i~----~~~~~~i~~  167 (189)
T 2i3b_A          136 GTIILGTIPVPKGKPLALVEEIR----NRKDVKVFN  167 (189)
T ss_dssp             SCCEEEECCCCCSSCCTTHHHHH----TTCCSEEEE
T ss_pred             CcEEEEEeecCCCCchHHHHHHe----ecCCcEEEE
Confidence            44443   445987  4555444    446666643

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.87  E-value=1e-22  Score=198.26  Aligned_cols=153  Identities=15%  Similarity=0.161  Sum_probs=99.9

Q ss_pred             eEEEEeeEEEc-----C-CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCC-ceeEEecCceEEEEEeec
Q 026376           28 IISFSDASFGY-----P-GGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-SGTVFRSAKVRIAVFSQH  100 (239)
Q Consensus        28 ~l~~~~l~~~y-----~-~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~-~G~i~~~~~~~~~~~~q~  100 (239)
                      .+.+++...-+     + ++..+++|+||++++|++++|+||||||||||||+|+++.-.. .|.........++++   
T Consensus       640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~---  716 (918)
T 3thx_B          640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIV---  716 (918)
T ss_dssp             EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECC---
T ss_pred             cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHH---
Confidence            56776653221     1 2456899999999999999999999999999999998643211 111000000001100   


Q ss_pred             cCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 026376          101 HVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL  180 (239)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~  180 (239)
                                                 ..++..+++.+. ..+..+++|+||+|++.|+++ +.+|+++||||||+|||+
T Consensus       717 ---------------------------d~i~~~ig~~d~-l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~  767 (918)
T 3thx_B          717 ---------------------------DGIFTRMGAADN-IYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTST  767 (918)
T ss_dssp             ---------------------------SEEEEEC-----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCH
T ss_pred             ---------------------------HHHHHhCChHHH-HHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCH
Confidence                                       012333444332 235568999999999999999 899999999999999999


Q ss_pred             HHHHHHH----HHHhh-cCCEEEEEecCHHHHhhhcCe
Q 026376          181 DAVEALI----QGLVL-FQGGILMVSHDEHLISGSVEE  213 (239)
Q Consensus       181 ~~~~~l~----~~l~~-~~~tii~vsHd~~~~~~~~d~  213 (239)
                      .....+.    +.+.+ .+.+||++|||.+.+. +||+
T Consensus       768 ~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~-l~~~  804 (918)
T 3thx_B          768 HDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCE-LEKN  804 (918)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-HHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHH-HHhh
Confidence            8765554    44433 4779999999988764 5554

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.86  E-value=9.2e-22  Score=190.79  Aligned_cols=103  Identities=25%  Similarity=0.298  Sum_probs=89.1

Q ss_pred             HHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCH
Q 026376          130 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP--HIILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDE  204 (239)
Q Consensus       130 ~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p--~llllDEPt~~LD~~~~~~l~~~l~---~~~~tii~vsHd~  204 (239)
                      .|..+|+.....++++.+|||||+|||+||++|..+|  ++|||||||++||+....++++.|+   +.+.|||+||||+
T Consensus       487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl  566 (972)
T 2r6f_A          487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE  566 (972)
T ss_dssp             HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred             HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence            4778898643368899999999999999999999984  9999999999999999888876655   4577999999999


Q ss_pred             HHHhhhcCeEEEE------eCCeEEeeCCChhHHHH
Q 026376          205 HLISGSVEELWVV------SEGKATPFHGTFHDYKK  234 (239)
Q Consensus       205 ~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~  234 (239)
                      +++. .||+|++|      ++|+++ +.|+++++.+
T Consensus       567 ~~i~-~ADrIi~LgpgaG~~gG~iv-~~G~~~e~~~  600 (972)
T 2r6f_A          567 DTML-AADYLIDIGPGAGIHGGEVV-AAGTPEEVMN  600 (972)
T ss_dssp             HHHH-SCSEEEEECSSSGGGCCSEE-EEECTTTTTT
T ss_pred             HHHH-hCCEEEEeCCCccCCCCEEE-EecCHHHHHh
Confidence            9986 69999999      688887 7899887753

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.85  E-value=1.9e-21  Score=160.29  Aligned_cols=153  Identities=15%  Similarity=0.220  Sum_probs=85.7

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHH
Q 026376           51 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH  130 (239)
Q Consensus        51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (239)
                      -|++|++++|+||||||||||+++|+|...+..|.....+  ...|+....    ......+..+.... ....+   .+
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~--~~i~~~~~~----~~~~~~i~~~~~~~-~~~~~---~~   90 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNG--SVIWIDTEN----TFRPERIREIAQNR-GLDPD---EV   90 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSC--EEEEEESSS----CCCHHHHHHHHHHT-TSCHH---HH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCC--EEEEEECCC----CCCHHHHHHHHHHc-CCCHH---HH
Confidence            6899999999999999999999999996655332211111  112222211    01111122222221 12222   22


Q ss_pred             HHhcCCCcccccCCCCCCChHHH-HHHHHHHHhcc-------CCCEEEEeCCCCCCCHH-------H-----HHHHHHHH
Q 026376          131 LGSFGVTGNLALQPMYTLSGGQK-SRVAFAKITFK-------KPHIILLDEPSNHLDLD-------A-----VEALIQGL  190 (239)
Q Consensus       131 l~~~~l~~~~~~~~~~~LSgGqk-qrv~laral~~-------~p~llllDEPt~~LD~~-------~-----~~~l~~~l  190 (239)
                      .+.+.+        ....+.+++ +.+..+++++.       +|+++++||||+++|+.       .     ...+++.+
T Consensus        91 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l  162 (231)
T 4a74_A           91 LKHIYV--------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADL  162 (231)
T ss_dssp             HHTEEE--------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHH
T ss_pred             hhcEEE--------EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHH
Confidence            332211        123344443 33555555554       99999999999999983       1     11333333


Q ss_pred             ----hhcCCEEEEEec----CHHHHhhhcCeEEEEeCCe
Q 026376          191 ----VLFQGGILMVSH----DEHLISGSVEELWVVSEGK  221 (239)
Q Consensus       191 ----~~~~~tii~vsH----d~~~~~~~~d~i~~l~~G~  221 (239)
                          ++.+.|||++||    +-..+..+||++++|++|+
T Consensus       163 ~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~  201 (231)
T 4a74_A          163 HRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK  201 (231)
T ss_dssp             HHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred             HHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence                345789999999    5555889999999998764

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.85  E-value=2.2e-21  Score=187.22  Aligned_cols=103  Identities=26%  Similarity=0.281  Sum_probs=89.1

Q ss_pred             HHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHH---hhcCCEEEEEecCH
Q 026376          130 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP--HIILLDEPSNHLDLDAVEALIQGL---VLFQGGILMVSHDE  204 (239)
Q Consensus       130 ~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p--~llllDEPt~~LD~~~~~~l~~~l---~~~~~tii~vsHd~  204 (239)
                      .|..+|+.....++++.+|||||||||+||++|+.+|  .+|||||||++||+....++++.+   ++.+.|||+||||+
T Consensus       362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl  441 (842)
T 2vf7_A          362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL  441 (842)
T ss_dssp             HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred             HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence            5778899743368899999999999999999999999  599999999999999988887755   45578999999999


Q ss_pred             HHHhhhcCeEEEE------eCCeEEeeCCChhHHHH
Q 026376          205 HLISGSVEELWVV------SEGKATPFHGTFHDYKK  234 (239)
Q Consensus       205 ~~~~~~~d~i~~l------~~G~i~~~~g~~~~~~~  234 (239)
                      +++. .||+|++|      ++|+++ +.|+++++.+
T Consensus       442 ~~l~-~aD~ii~lgpgaG~~~G~iv-~~g~~~~~~~  475 (842)
T 2vf7_A          442 DVIR-RADWLVDVGPEAGEKGGEIL-YSGPPEGLKH  475 (842)
T ss_dssp             HHHT-TCSEEEEECSSSGGGCCSEE-EEECGGGGGG
T ss_pred             HHHH-hCCEEEEeCCCcccCCCEEE-EecCHHHHHh
Confidence            9875 69999999      688886 7899988754

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.84  E-value=4.7e-21  Score=157.84  Aligned_cols=164  Identities=12%  Similarity=0.037  Sum_probs=103.8

Q ss_pred             CceeeeeeE-EEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCC
Q 026376           42 PILFKNLNF-GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP  120 (239)
Q Consensus        42 ~~~l~~isl-~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~  120 (239)
                      ...|+++.. .+.+|++++|+||||||||||++.|++...+.+|.+.+.        ..+.      ....+....... 
T Consensus         9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~--------~~~~------~~~~~~~~~~~~-   73 (235)
T 2w0m_A            9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV--------TTEE------SRDSIIRQAKQF-   73 (235)
T ss_dssp             CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE--------ESSS------CHHHHHHHHHHT-
T ss_pred             chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE--------Eccc------CHHHHHHHHHHh-
Confidence            456888887 899999999999999999999999999888777766432        1110      001111111111 


Q ss_pred             CCcHHHHH-HHHHhcCC-Cccc-ccCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCCC--CHHHHHHHHHHHh--
Q 026376          121 GVPEQKLR-AHLGSFGV-TGNL-ALQPMYTLSGGQKSRVAFAKITFKKPH--IILLDEPSNHL--DLDAVEALIQGLV--  191 (239)
Q Consensus       121 ~~~~~~~~-~~l~~~~l-~~~~-~~~~~~~LSgGqkqrv~laral~~~p~--llllDEPt~~L--D~~~~~~l~~~l~--  191 (239)
                      ....+... ..+..+.. .... ........|.++.++...+.+...+|+  ++++||||+.+  |+.....+++.|+  
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~  153 (235)
T 2w0m_A           74 NWDFEEYIEKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRV  153 (235)
T ss_dssp             TCCCGGGBTTTEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHH
T ss_pred             cchHHHHhhCCEEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHH
Confidence            00000000 00000000 0000 001123459999999888888888999  99999999888  9877666666554  


Q ss_pred             --hcCCEEEEEecCH--------HHHhhhcCeEEEEeCC
Q 026376          192 --LFQGGILMVSHDE--------HLISGSVEELWVVSEG  220 (239)
Q Consensus       192 --~~~~tii~vsHd~--------~~~~~~~d~i~~l~~G  220 (239)
                        +.+.|||++||+.        ..+..+||++++|+..
T Consensus       154 ~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~  192 (235)
T 2w0m_A          154 LNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM  192 (235)
T ss_dssp             HHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred             HHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence              3467999999999        5588899999999754

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.83  E-value=7.8e-24  Score=173.32  Aligned_cols=141  Identities=16%  Similarity=0.089  Sum_probs=103.6

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCC---CCcHHHHH
Q 026376           52 IDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP---GVPEQKLR  128 (239)
Q Consensus        52 i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  128 (239)
                      .++|++++|+||||||||||+++|+|++.|           .++|++|+.........+........+.   ..+.+++.
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-----------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLGE-----------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYL   71 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHGG-----------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-----------CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHH
Confidence            578999999999999999999999999876           4788999864321111222222211111   12346677


Q ss_pred             HHHHhcCCCcccccCCCCCCChHHH----HHHHHHHHhccCCCEEEEeCCCCC-------CCHHHHHHHHHHHhh----c
Q 026376          129 AHLGSFGVTGNLALQPMYTLSGGQK----SRVAFAKITFKKPHIILLDEPSNH-------LDLDAVEALIQGLVL----F  193 (239)
Q Consensus       129 ~~l~~~~l~~~~~~~~~~~LSgGqk----qrv~laral~~~p~llllDEPt~~-------LD~~~~~~l~~~l~~----~  193 (239)
                      ++++.+++.+. ..+++.++|+||+    ||+++|++++.+|.++++||||++       ||......+.+.+.+    .
T Consensus        72 ~~l~~~~~~~~-~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~  150 (211)
T 3asz_A           72 EHAQALLRGLP-VEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLER  150 (211)
T ss_dssp             HHHHHHHTTCC-EEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCC-cCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHh
Confidence            88888887654 4568899999974    788999999999999999999999       898877766666543    3


Q ss_pred             CCEEEEEecCH
Q 026376          194 QGGILMVSHDE  204 (239)
Q Consensus       194 ~~tii~vsHd~  204 (239)
                      +.|+++++|+.
T Consensus       151 g~t~~~~~~~~  161 (211)
T 3asz_A          151 GRSLEGVVAQY  161 (211)
T ss_dssp             CCCHHHHHHHH
T ss_pred             CCCHHHHHHHH
Confidence            67899999985

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.82  E-value=6.2e-23  Score=177.74  Aligned_cols=154  Identities=16%  Similarity=0.085  Sum_probs=77.2

Q ss_pred             EeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC-cCCCceeEEecC--------ceEEEEEeeccC
Q 026376           32 SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE-LQPSSGTVFRSA--------KVRIAVFSQHHV  102 (239)
Q Consensus        32 ~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl-~~p~~G~i~~~~--------~~~~~~~~q~~~  102 (239)
                      .||++.| +++.++++++|+|      +|+||||||||||+++|+|. ..|++| +...+        ...+++++|...
T Consensus         2 ~~l~~~~-~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~   73 (301)
T 2qnr_A            2 SNLPNQV-HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERG   73 (301)
T ss_dssp             -----------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC---
T ss_pred             CCCcceE-CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCC
Confidence            5789999 4567999999998      99999999999999999998 888888 54322        123567776532


Q ss_pred             CC--CCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC-CC
Q 026376          103 DG--LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH-LD  179 (239)
Q Consensus       103 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~-LD  179 (239)
                      ..  +.+..++-.... .........+.+.+.      ...++++.++|||||||+.+|||++    ++++||||++ ||
T Consensus        74 ~~~~ltv~Dt~g~~~~-~~~~e~~~~l~~~l~------~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld  142 (301)
T 2qnr_A           74 VKLRLTVVDTPGYGDA-INCRDCFKTIISYID------EQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLK  142 (301)
T ss_dssp             CCEEEEEEEEC------------CTTHHHHHH------HHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCC
T ss_pred             cccCcchhhhhhhhhh-cCcHHHHHHHHHHHH------HHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCC
Confidence            11  111111111000 000000001111111      1223567899999999999999986    9999999985 99


Q ss_pred             HHHHHHHHHHHhhc-CCEEEEEecCHH
Q 026376          180 LDAVEALIQGLVLF-QGGILMVSHDEH  205 (239)
Q Consensus       180 ~~~~~~l~~~l~~~-~~tii~vsHd~~  205 (239)
                      +... .+++.+... +.++|+++||+.
T Consensus       143 ~~~~-~~l~~l~~~~~iilV~~K~Dl~  168 (301)
T 2qnr_A          143 PLDV-AFMKAIHNKVNIVPVIAKADTL  168 (301)
T ss_dssp             HHHH-HHHHHHTTTSCEEEEECCGGGS
T ss_pred             HHHH-HHHHHHHhcCCEEEEEEeCCCC
Confidence            9875 455555442 457888999973

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.81  E-value=3.9e-21  Score=169.95  Aligned_cols=145  Identities=17%  Similarity=0.163  Sum_probs=94.9

Q ss_pred             EeeEEEcCC-CCceeeeeeE-------EEeCCCEEEEECCCCCcHHHHHHHHhcCcCCC-ceeEEecCceEEEEEeeccC
Q 026376           32 SDASFGYPG-GPILFKNLNF-------GIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-SGTVFRSAKVRIAVFSQHHV  102 (239)
Q Consensus        32 ~~l~~~y~~-~~~~l~~isl-------~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~-~G~i~~~~~~~~~~~~q~~~  102 (239)
                      .+++++|.. ....|+++.+       .+.+|++++|+||||||||||+++|+|+++|+ +|.|...         .++.
T Consensus        92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~---------ed~~  162 (356)
T 3jvv_A           92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTI---------EDPI  162 (356)
T ss_dssp             EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEE---------ESSC
T ss_pred             cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEc---------cCcH
Confidence            345555522 2345566665       67889999999999999999999999999987 5665321         1111


Q ss_pred             CCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH
Q 026376          103 DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA  182 (239)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~  182 (239)
                      .. .....         ...        +....       .....++..+    +||+||..+|++|++||||   |.++
T Consensus       163 e~-~~~~~---------~~~--------v~q~~-------~~~~~~~~~~----~La~aL~~~PdvillDEp~---d~e~  210 (356)
T 3jvv_A          163 EF-VHESK---------KCL--------VNQRE-------VHRDTLGFSE----ALRSALREDPDIILVGEMR---DLET  210 (356)
T ss_dssp             CS-CCCCS---------SSE--------EEEEE-------BTTTBSCHHH----HHHHHTTSCCSEEEESCCC---SHHH
T ss_pred             Hh-hhhcc---------ccc--------eeeee-------eccccCCHHH----HHHHHhhhCcCEEecCCCC---CHHH
Confidence            10 00000         000        00000       0001123222    9999999999999999999   7877


Q ss_pred             HHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeC
Q 026376          183 VEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSE  219 (239)
Q Consensus       183 ~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~  219 (239)
                      ...+++.. ..|.+||+++|+.+.+ ..|||++.|..
T Consensus       211 ~~~~~~~~-~~G~~vl~t~H~~~~~-~~~dRli~l~~  245 (356)
T 3jvv_A          211 IRLALTAA-ETGHLVFGTLHTTSAA-KTIDRVVDVFP  245 (356)
T ss_dssp             HHHHHHHH-HTTCEEEEEESCSSHH-HHHHHHHHTSC
T ss_pred             HHHHHHHH-hcCCEEEEEEccChHH-HHHHHHhhhcC
Confidence            66656553 4578999999999988 57899887743

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.81  E-value=6.3e-21  Score=183.89  Aligned_cols=162  Identities=19%  Similarity=0.143  Sum_probs=99.9

Q ss_pred             CeEEEEeeEEEc----CCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-CceeEEecCceEEEEEeecc
Q 026376           27 PIISFSDASFGY----PGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-SSGTVFRSAKVRIAVFSQHH  101 (239)
Q Consensus        27 ~~l~~~~l~~~y----~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-~~G~i~~~~~~~~~~~~q~~  101 (239)
                      ..+.+++...-.    -++..+++|++|+ ++|++++|+||||||||||||+|+|+..+ ..|.........+++++|- 
T Consensus       576 ~~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~i-  653 (800)
T 1wb9_A          576 PGIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRI-  653 (800)
T ss_dssp             SCEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEE-
T ss_pred             CCEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHHH-
Confidence            346676642111    0235689999999 99999999999999999999999997432 2232111111122222221 


Q ss_pred             CCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 026376          102 VDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD  181 (239)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~  181 (239)
                                                   +..++..+.. ....+++|+++++ ++.+...+.+|+++|||||++|+|+.
T Consensus       654 -----------------------------~~~~~~~d~l-~~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~  702 (800)
T 1wb9_A          654 -----------------------------FTRVGAADDL-ASGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTY  702 (800)
T ss_dssp             -----------------------------EEEEC------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSS
T ss_pred             -----------------------------HhhCCHHHHH-HhhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChh
Confidence                                         1112221111 1233567777765 44445568999999999998888875


Q ss_pred             HH----HHHHHHHhh-cCCEEEEEecCHHHHhhhcCeEEEEeCCeE
Q 026376          182 AV----EALIQGLVL-FQGGILMVSHDEHLISGSVEELWVVSEGKA  222 (239)
Q Consensus       182 ~~----~~l~~~l~~-~~~tii~vsHd~~~~~~~~d~i~~l~~G~i  222 (239)
                      ..    ..+++.+.+ .+.++|++||+.+++. +||++..+.+|++
T Consensus       703 d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~-l~d~~~~v~n~~~  747 (800)
T 1wb9_A          703 DGLSLAWACAENLANKIKALTLFATHYFELTQ-LPEKMEGVANVHL  747 (800)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-HHHHSTTEEEEEE
T ss_pred             HHHHHHHHHHHHHHhccCCeEEEEeCCHHHHH-HhhhhhceEEEEE
Confidence            43    345666666 4779999999998764 8887655555554

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.81  E-value=1e-20  Score=153.91  Aligned_cols=158  Identities=13%  Similarity=0.105  Sum_probs=95.6

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCc-----CCCceeEEecCce----EEEEEe
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL-----QPSSGTVFRSAKV----RIAVFS   98 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~-----~p~~G~i~~~~~~----~~~~~~   98 (239)
                      +|+++|+++.|+ . .++++  |.+.+|.+++|+|+||||||||++.|+|..     .|+.|++...+..    .+.++ 
T Consensus         3 ~l~~~~~~~~~~-~-~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~-   77 (210)
T 1pui_A            3 NLNYQQTHFVMS-A-PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV-   77 (210)
T ss_dssp             --------CEEE-E-SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE-
T ss_pred             chhhhhhhheee-c-CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE-
Confidence            589999999994 3 56777  899999999999999999999999999998     7888876532110    01111 


Q ss_pred             eccCCCCC-----CCC-c----HHHHHHHhC-------------CCCc--HHHHHHHHHhcCCCcccccCCCCCCChHHH
Q 026376           99 QHHVDGLD-----LSS-N----PLLYMMRCF-------------PGVP--EQKLRAHLGSFGVTGNLALQPMYTLSGGQK  153 (239)
Q Consensus        99 q~~~~~~~-----~~~-~----~~~~~~~~~-------------~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk  153 (239)
                      ..+  +..     ... .    ....+....             ....  ..++.+++...++.......++..+|+||+
T Consensus        78 Dt~--G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~  155 (210)
T 1pui_A           78 DLP--GYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGAR  155 (210)
T ss_dssp             ECC--CCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHH
T ss_pred             ECc--CCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhH
Confidence            000  110     000 0    011111100             0111  234556677777754333456788999999


Q ss_pred             HH-HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 026376          154 SR-VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL  192 (239)
Q Consensus       154 qr-v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  192 (239)
                      || +..+++++.+|+++++|||||++|..+...+++.+.+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~  195 (210)
T 1pui_A          156 KAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDT  195 (210)
T ss_dssp             HHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHH
Confidence            99 8999999999999999999999999999988887765

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.80  E-value=6.4e-19  Score=140.72  Aligned_cols=93  Identities=17%  Similarity=0.263  Sum_probs=76.2

Q ss_pred             cCCCCCCChHHHHHHHHHHHhcc----CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEE
Q 026376          142 LQPMYTLSGGQKSRVAFAKITFK----KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELW  215 (239)
Q Consensus       142 ~~~~~~LSgGqkqrv~laral~~----~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~  215 (239)
                      .+++..||||||||++||++|+.    .|+++||||||++||+.+...+.+.+++.  +.++|+|||+.... ..||+++
T Consensus        59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~i~  137 (173)
T 3kta_B           59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADKII  137 (173)
T ss_dssp             CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEE
T ss_pred             ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCEEE
Confidence            45678999999999999999974    47999999999999999999999888765  35899999998765 5899998


Q ss_pred             EE--eCCeEEeeCCChhHHHHH
Q 026376          216 VV--SEGKATPFHGTFHDYKKM  235 (239)
Q Consensus       216 ~l--~~G~i~~~~g~~~~~~~~  235 (239)
                      .+  .+|.......+.+++.+.
T Consensus       138 ~v~~~~g~s~~~~~~~~~~~~~  159 (173)
T 3kta_B          138 GVSMRDGVSKVVSLSLEKAMKI  159 (173)
T ss_dssp             EEEEETTEEEEEECCHHHHHHH
T ss_pred             EEEecCCEEEEEEEEcHHHHHH
Confidence            55  578765556666665543

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.79  E-value=1.9e-19  Score=153.67  Aligned_cols=146  Identities=12%  Similarity=0.085  Sum_probs=95.1

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecC----ceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHH
Q 026376           51 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA----KVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQK  126 (239)
Q Consensus        51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~----~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (239)
                      .+.+|++++|+||||||||||++.|++...  .|.++...    ...+.|+..+..    . ......+...........
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~g~~~~~~~~v~~~~~e~~----~-~~~~~r~~~~g~~~~~~~   98 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELPTGPVIYLPAEDP----P-TAIHHRLHALGAHLSAEE   98 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCCCCCEEEEESSSC----H-HHHHHHHHHHHTTSCHHH
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcCCCccCCCccEEEEECCCC----H-HHHHHHHHHHHhhcChhh
Confidence            478999999999999999999999998664  35442211    123455543321    0 011111111111233445


Q ss_pred             HHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC--CCCHHH---HHHHHHHH----hhcCCEE
Q 026376          127 LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN--HLDLDA---VEALIQGL----VLFQGGI  197 (239)
Q Consensus       127 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~--~LD~~~---~~~l~~~l----~~~~~ti  197 (239)
                      ..++++.+.+.. ..++++..||+||+|++   ++++.+|+++++||||+  ++|...   ...+++.|    ++.+.||
T Consensus        99 ~~~~~~~l~l~~-~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tv  174 (279)
T 1nlf_A           99 RQAVADGLLIQP-LIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSI  174 (279)
T ss_dssp             HHHHHHHEEECC-CTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEE
T ss_pred             hhhccCceEEee-cCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEE
Confidence            666778887764 45678899999998765   67888999999999999  999743   24444444    3457899


Q ss_pred             EEEecCHHHH
Q 026376          198 LMVSHDEHLI  207 (239)
Q Consensus       198 i~vsHd~~~~  207 (239)
                      |+++|+....
T Consensus       175 i~i~H~~~~~  184 (279)
T 1nlf_A          175 VFLHHASKGA  184 (279)
T ss_dssp             EEEEEC----
T ss_pred             EEEecCCCcc
Confidence            9999998765

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.76  E-value=9.4e-19  Score=143.21  Aligned_cols=150  Identities=15%  Similarity=0.188  Sum_probs=94.6

Q ss_pred             ceeeeeeE-EEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCC
Q 026376           43 ILFKNLNF-GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPG  121 (239)
Q Consensus        43 ~~l~~isl-~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~  121 (239)
                      ..|+.+.. -+.+|++++|+||||||||||++.|++  .+ .+.        +.|+..+.  .+  ....+....... .
T Consensus         7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~-~~~--------v~~i~~~~--~~--~~~~~~~~~~~~-~   70 (220)
T 2cvh_A            7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS-GKK--------VAYVDTEG--GF--SPERLVQMAETR-G   70 (220)
T ss_dssp             HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH-CSE--------EEEEESSC--CC--CHHHHHHHHHTT-T
T ss_pred             HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc-CCc--------EEEEECCC--CC--CHHHHHHHHHhc-C
Confidence            45666654 689999999999999999999999999  22 222        22332221  01  111111111111 1


Q ss_pred             CcHHHHHHHHHhcCCCcccccCCCCCCChHH--HHHHHHHHHhccC-CCEEEEeCCCCCCCHHH--------HHHHHHHH
Q 026376          122 VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQ--KSRVAFAKITFKK-PHIILLDEPSNHLDLDA--------VEALIQGL  190 (239)
Q Consensus       122 ~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq--kqrv~laral~~~-p~llllDEPt~~LD~~~--------~~~l~~~l  190 (239)
                      ...+   ++++.+         .+..+|+++  +++++.+++++.+ |+++++||||+.+|...        ...+++.|
T Consensus        71 ~~~~---~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L  138 (220)
T 2cvh_A           71 LNPE---EALSRF---------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVL  138 (220)
T ss_dssp             CCHH---HHHHHE---------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHH
T ss_pred             CChH---HHhhcE---------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHH
Confidence            1111   122221         123445554  5688888999986 99999999999999732        23333333


Q ss_pred             ----hhcCCEEEEEecCHH-------------HHhhhcCeEEEEeCC
Q 026376          191 ----VLFQGGILMVSHDEH-------------LISGSVEELWVVSEG  220 (239)
Q Consensus       191 ----~~~~~tii~vsHd~~-------------~~~~~~d~i~~l~~G  220 (239)
                          ++.+.+||+++|...             .+..+||.+++|+..
T Consensus       139 ~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~  185 (220)
T 2cvh_A          139 LWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL  185 (220)
T ss_dssp             HHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred             HHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence                344779999999865             567899999999754

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.76  E-value=1.4e-21  Score=184.01  Aligned_cols=175  Identities=14%  Similarity=0.175  Sum_probs=91.9

Q ss_pred             CeEEEEeeEEEcCCC-Cceeeee----------eEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC-CceeEEecCc---
Q 026376           27 PIISFSDASFGYPGG-PILFKNL----------NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP-SSGTVFRSAK---   91 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~-~~~l~~i----------sl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-~~G~i~~~~~---   91 (239)
                      +.+.++|+++.|++. +.+++.+          +|+++.   ++|+|||||||||||++|+|+..| ++|.|.+++.   
T Consensus         9 ~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~   85 (608)
T 3szr_A            9 GSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK   85 (608)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred             chhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence            358899999999532 2344444          356654   999999999999999999999988 7999876553   


Q ss_pred             -----------eEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 026376           92 -----------VRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK  160 (239)
Q Consensus        92 -----------~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lar  160 (239)
                                 ..++|++|++..  ....+...            .+......++...       ..+|   ++++.++.
T Consensus        86 ~~~~~~~~~~~~~i~~v~Q~~~l--~~~~tv~e------------~i~~~~~~~~~~~-------~~~s---~~~i~l~i  141 (608)
T 3szr_A           86 LKKLVNEDKWRGKVSYQDYEIEI--SDASEVEK------------EINKAQNAIAGEG-------MGIS---HELITLEI  141 (608)
T ss_dssp             EEECSSSSCCEEEESCC---CCC--CCHHHHHT------------THHHHHHHHHCSS-------SCCC---SCCEEEEE
T ss_pred             EecCCccccceeEEeeecccccC--CCHHHHHH------------HHHHHHHHhcCCc-------cccc---hHHHHHHh
Confidence                       246666765421  11111111            1111112221110       0111   12233444


Q ss_pred             HhccCCCEEEEeCC------CCCCCHHHHHHHHHHHhhc-----CCEEEEEecCHHHH--------hhh----cCeEEEE
Q 026376          161 ITFKKPHIILLDEP------SNHLDLDAVEALIQGLVLF-----QGGILMVSHDEHLI--------SGS----VEELWVV  217 (239)
Q Consensus       161 al~~~p~llllDEP------t~~LD~~~~~~l~~~l~~~-----~~tii~vsHd~~~~--------~~~----~d~i~~l  217 (239)
                      +....|+++|+|||      |++||+.....+.+.+.++     +.+++++|||.+.+        ..+    +..|.++
T Consensus       142 ~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~Vl  221 (608)
T 3szr_A          142 SSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGIL  221 (608)
T ss_dssp             EESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEE
T ss_pred             cCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEe
Confidence            55668999999999      9999999888877777653     23688999997633        222    2457778


Q ss_pred             eCCeEEeeCCCh
Q 026376          218 SEGKATPFHGTF  229 (239)
Q Consensus       218 ~~G~i~~~~g~~  229 (239)
                      .++.++ ..|+.
T Consensus       222 TK~Dlv-~~g~~  232 (608)
T 3szr_A          222 TKPDLV-DKGTE  232 (608)
T ss_dssp             ECGGGS-SSSST
T ss_pred             cchhhc-CcccH
Confidence            776654 34443

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.75  E-value=1.1e-19  Score=163.59  Aligned_cols=156  Identities=12%  Similarity=0.074  Sum_probs=88.5

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCcee--EEec-----CceEEEEEee
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT--VFRS-----AKVRIAVFSQ   99 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~--i~~~-----~~~~~~~~~q   99 (239)
                      .+|.++||++.|+ +..+++++||+|      +|+|+||||||||+++|+|...|..|.  +...     ....+++++|
T Consensus        10 ~~l~~~~l~~~y~-~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q   82 (418)
T 2qag_C           10 GYVGFANLPNQVY-RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIK   82 (418)
T ss_dssp             -----CCCCCCTT-TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC--
T ss_pred             CcEEEEecceeEC-CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEe
Confidence            4689999999995 567899999998      999999999999999999998765441  1111     0124666666


Q ss_pred             ccCCC--CCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC---EEEEeCC
Q 026376          100 HHVDG--LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH---IILLDEP  174 (239)
Q Consensus       100 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~---llllDEP  174 (239)
                      .....  +.+..++..... .........+.+.++             ..++.+++||++|||+++.+|+   +|++|||
T Consensus        83 ~~~~~~~Ltv~Dt~g~~~~-~~~~~~~~~i~~~i~-------------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldeP  148 (418)
T 2qag_C           83 EGGVQLLLTIVDTPGFGDA-VDNSNCWQPVIDYID-------------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAP  148 (418)
T ss_dssp             ----CEEEEEEECC------------CHHHHHHHH-------------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC
T ss_pred             cCCcccceeeeechhhhhh-ccchhhHHHHHHHHH-------------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecC
Confidence            53211  111112111000 000000011212221             1345667789999999999999   9999999


Q ss_pred             C-CCCCHHHHHHHHHHHhhcCCEEEEEecCHH
Q 026376          175 S-NHLDLDAVEALIQGLVLFQGGILMVSHDEH  205 (239)
Q Consensus       175 t-~~LD~~~~~~l~~~l~~~~~tii~vsHd~~  205 (239)
                      | ++||+... .+++.+.. +.+||+|.|..+
T Consensus       149 t~~~L~~~d~-~~lk~L~~-~v~iIlVinK~D  178 (418)
T 2qag_C          149 SGHGLKPLDI-EFMKRLHE-KVNIIPLIAKAD  178 (418)
T ss_dssp             -CCSCCHHHH-HHHHHHTT-TSEEEEEEESTT
T ss_pred             cccCCCHHHH-HHHHHHhc-cCcEEEEEEccc
Confidence            9 69998874 44555654 567777766443

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.75  E-value=1.9e-18  Score=159.85  Aligned_cols=77  Identities=23%  Similarity=0.311  Sum_probs=68.5

Q ss_pred             CCCCCC-ChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEE
Q 026376          143 QPMYTL-SGGQKSRVAFAKITFKKP--HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVV  217 (239)
Q Consensus       143 ~~~~~L-SgGqkqrv~laral~~~p--~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l  217 (239)
                      +++..| ||||||||+||++|+.+|  ++|||||||+|||+.+...+.+.|++.  +.|||+||||++++. .||++++|
T Consensus       392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~  470 (517)
T 4ad8_A          392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKV  470 (517)
T ss_dssp             CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEE
T ss_pred             ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence            456788 999999999999999999  999999999999999988887777654  679999999999886 69999999


Q ss_pred             eCC
Q 026376          218 SEG  220 (239)
Q Consensus       218 ~~G  220 (239)
                      +++
T Consensus       471 ~~~  473 (517)
T 4ad8_A          471 EKQ  473 (517)
T ss_dssp             ECC
T ss_pred             ecc
Confidence            554

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.74  E-value=2e-19  Score=155.80  Aligned_cols=169  Identities=15%  Similarity=0.078  Sum_probs=99.8

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------------eEEEEEeeccCCCCCCCCcHHHHHH
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------------VRIAVFSQHHVDGLDLSSNPLLYMM  116 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------------~~~~~~~q~~~~~~~~~~~~~~~~~  116 (239)
                      +|++++|+||||||||||+++|+|+++|++|+|.+.+.                 ..+++++|.+.  .....+....+.
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~--~~p~~~v~~~v~  178 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEG--TDSAALAYDAVQ  178 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTT--CCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCC--CCHHHHHHHHHH
Confidence            69999999999999999999999999999999987542                 13667777642  111111111111


Q ss_pred             HhC-CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCCCCHHHHHHHHHHHh-h
Q 026376          117 RCF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH--IILLDEPSNHLDLDAVEALIQGLV-L  192 (239)
Q Consensus       117 ~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~--llllDEPt~~LD~~~~~~l~~~l~-~  192 (239)
                      ... ...+    ..+++..|..+    .....++..++||++||||++.+|+  ++.|| |+++.+...   .+..+. .
T Consensus       179 ~~~~~~~d----~~llDt~G~~~----~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~~---~~~~~~~~  246 (304)
T 1rj9_A          179 AMKARGYD----LLFVDTAGRLH----TKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGLE---QAKKFHEA  246 (304)
T ss_dssp             HHHHHTCS----EEEECCCCCCT----TCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHHH---HHHHHHHH
T ss_pred             HHHhCCCC----EEEecCCCCCC----chHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHHH---HHHHHHHH
Confidence            000 0000    00122233321    1112345566999999999999999  66677 666654332   223333 3


Q ss_pred             cCCEEEEEecCHHHHh---------hhcCeEEEEeCCeEEe--eCCChhHHHHHh
Q 026376          193 FQGGILMVSHDEHLIS---------GSVEELWVVSEGKATP--FHGTFHDYKKML  236 (239)
Q Consensus       193 ~~~tii~vsHd~~~~~---------~~~d~i~~l~~G~i~~--~~g~~~~~~~~~  236 (239)
                      .+.|+|++||+.....         ...-.|..+..|+-..  ..-+++.|.+++
T Consensus       247 ~~~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~~~l  301 (304)
T 1rj9_A          247 VGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGEGPDDLQPFDPEAFVEAL  301 (304)
T ss_dssp             HCCSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSSSTTCEEECCHHHHHHHH
T ss_pred             cCCcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCCChhhcccCCHHHHHHHH
Confidence            4779999999854321         1123566676665310  124666666554

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.73  E-value=1.2e-19  Score=150.26  Aligned_cols=144  Identities=12%  Similarity=0.190  Sum_probs=87.8

Q ss_pred             eEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC--CceeEEecCce-------EEEEEeeccCCCCCCCCcHHHHHHHhC
Q 026376           49 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP--SSGTVFRSAKV-------RIAVFSQHHVDGLDLSSNPLLYMMRCF  119 (239)
Q Consensus        49 sl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~~~-------~~~~~~q~~~~~~~~~~~~~~~~~~~~  119 (239)
                      .-..++|++++|+||||||||||+++|+|+.+|  ..|.|.+.++.       .++|+||++                  
T Consensus        10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~------------------   71 (219)
T 1s96_A           10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNH------------------   71 (219)
T ss_dssp             -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCH------------------
T ss_pred             cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCH------------------
Confidence            346789999999999999999999999999986  67877654421       133333321                  


Q ss_pred             CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEE
Q 026376          120 PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILM  199 (239)
Q Consensus       120 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~  199 (239)
                           .........-.+.+..  .....+.|-.+++   +..++..++++|||     ||+.+...+.+.+. .+.+|++
T Consensus        72 -----~~f~~~~~~~~f~E~~--~~~~~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~-~~~tI~i  135 (219)
T 1s96_A           72 -----DEFKEMISRDAFLEHA--EVFGNYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-HARSIFI  135 (219)
T ss_dssp             -----HHHHHHHHTTCEEEEE--EETTEEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-TCEEEEE
T ss_pred             -----HHHHHHHhcCHHHHHH--HHHhccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-CCEEEEE
Confidence                 1111111100000000  0001111111222   34455678999999     99999999998876 3669999


Q ss_pred             EecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHHh
Q 026376          200 VSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKML  236 (239)
Q Consensus       200 vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~  236 (239)
                      +||+++.+.+   |+  +.+|     .++++++.+++
T Consensus       136 ~th~~~~l~~---Rl--~~rG-----~~~~e~i~~rl  162 (219)
T 1s96_A          136 LPPSKIELDR---RL--RGRG-----QDSEEVIAKRM  162 (219)
T ss_dssp             ECSSHHHHHH---HH--HTTS-----CSCHHHHHHHH
T ss_pred             ECCCHHHHHH---HH--HHcC-----CCCHHHHHHHH
Confidence            9999998875   43  5566     36777776554

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=99.73  E-value=4.9e-19  Score=157.46  Aligned_cols=127  Identities=17%  Similarity=0.196  Sum_probs=85.7

Q ss_pred             eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCC-ceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCC
Q 026376           44 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPS-SGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGV  122 (239)
Q Consensus        44 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~-~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~  122 (239)
                      +|++++  +++|++++|+||||||||||+++|+|+++|+ +|+|...+.         +.. ......        ..-.
T Consensus       127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~---------~~e-~~~~~~--------~~~v  186 (372)
T 2ewv_A          127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED---------PIE-YVFKHK--------KSIV  186 (372)
T ss_dssp             SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES---------SCC-SCCCCS--------SSEE
T ss_pred             HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc---------cHh-hhhccC--------ceEE
Confidence            455554  7899999999999999999999999999998 899854221         110 000000        0000


Q ss_pred             cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEec
Q 026376          123 PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSH  202 (239)
Q Consensus       123 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsH  202 (239)
                      ..       ..+++.       +..|      +.+|+++|..+|+++++|||+   |++....+++.. ..+.+|+.++|
T Consensus       187 ~Q-------~~~g~~-------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~-~~g~~vi~t~H  242 (372)
T 2ewv_A          187 NQ-------REVGED-------TKSF------ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLH  242 (372)
T ss_dssp             EE-------EEBTTT-------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-TTTCEEEECCC
T ss_pred             Ee-------eecCCC-------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHH-hcCCEEEEEEC
Confidence            00       012221       2344      469999999999999999999   887766655554 34678999999


Q ss_pred             CHHHHhhhcCeEE
Q 026376          203 DEHLISGSVEELW  215 (239)
Q Consensus       203 d~~~~~~~~d~i~  215 (239)
                      +.+ +...+||++
T Consensus       243 ~~~-~~~~~~rl~  254 (372)
T 2ewv_A          243 TNT-AIDTIHRIV  254 (372)
T ss_dssp             CCS-HHHHHHHHH
T ss_pred             cch-HHHHHHHHH
Confidence            866 455666653

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.72  E-value=3.2e-19  Score=158.05  Aligned_cols=158  Identities=16%  Similarity=0.145  Sum_probs=107.3

Q ss_pred             EEEeeEEE---cCC-CCcee---------eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce----
Q 026376           30 SFSDASFG---YPG-GPILF---------KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV----   92 (239)
Q Consensus        30 ~~~~l~~~---y~~-~~~~l---------~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~----   92 (239)
                      ++++++|+   |++ ...+|         +++||.+++|++++|+||||||||||+++|+|+++|++|.|.+++..    
T Consensus       137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~  216 (361)
T 2gza_A          137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFL  216 (361)
T ss_dssp             TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCC
T ss_pred             CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCc
Confidence            66778877   742 12344         99999999999999999999999999999999999999999876421    


Q ss_pred             -----EEEEEe-eccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 026376           93 -----RIAVFS-QHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP  166 (239)
Q Consensus        93 -----~~~~~~-q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p  166 (239)
                           .+++++ |+                                           ....++++..++..|+.++..+|
T Consensus       217 ~~~~~~v~~v~~q~-------------------------------------------~~~~~~~~~t~~~~i~~~l~~~p  253 (361)
T 2gza_A          217 PDHPNHVHLFYPSE-------------------------------------------AKEEENAPVTAATLLRSCLRMKP  253 (361)
T ss_dssp             TTCSSEEEEECC-----------------------------------------------------CCHHHHHHHHTTSCC
T ss_pred             cccCCEEEEeecCc-------------------------------------------cccccccccCHHHHHHHHHhcCC
Confidence                 011111 00                                           00012455568899999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376          167 HIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  235 (239)
Q Consensus       167 ~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  235 (239)
                      +.+++|||...    ....+++.+..-..|++.++|+.. +...++|+..+..+.......+++.+.++
T Consensus       254 d~~l~~e~r~~----~~~~~l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~~~~~~~~~~~~i~~~  317 (361)
T 2gza_A          254 TRILLAELRGG----EAYDFINVAASGHGGSITSCHAGS-CELTFERLALMVLQNRQGRQLPYEIIRRL  317 (361)
T ss_dssp             SEEEESCCCST----HHHHHHHHHHTTCCSCEEEEECSS-HHHHHHHHHHHHTTSTTGGGSCHHHHHHH
T ss_pred             CEEEEcCchHH----HHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHHHHhccccccCCCHHHHHHH
Confidence            99999999862    233345555432347899999976 66678998888766421123344444433

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.72  E-value=3.5e-18  Score=150.75  Aligned_cols=155  Identities=14%  Similarity=0.189  Sum_probs=91.9

Q ss_pred             ceeeee-eEEEeCCCEEEEECCCCCcHHHHHHHHhcCc--CCCc----ee-EEecCceEEEEEeeccCCCCCCCCcHHHH
Q 026376           43 ILFKNL-NFGIDLDSRIAMVGPNGIGKSTILKLIAGEL--QPSS----GT-VFRSAKVRIAVFSQHHVDGLDLSSNPLLY  114 (239)
Q Consensus        43 ~~l~~i-sl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~--~p~~----G~-i~~~~~~~~~~~~q~~~~~~~~~~~~~~~  114 (239)
                      ..|+.+ ++.|++|++++|+||||||||||++.|++..  +|++    |. |++++..         .    +....+..
T Consensus       118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~---------~----~~~~~i~~  184 (349)
T 1pzn_A          118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN---------T----FRPERIRE  184 (349)
T ss_dssp             HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS---------C----CCHHHHHH
T ss_pred             HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC---------C----CCHHHHHH
Confidence            346665 6899999999999999999999999999998  6776    45 4443321         0    00111122


Q ss_pred             HHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc-------cCCCEEEEeCCCCCCCHHH-----
Q 026376          115 MMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF-------KKPHIILLDEPSNHLDLDA-----  182 (239)
Q Consensus       115 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~-------~~p~llllDEPt~~LD~~~-----  182 (239)
                      +.... .....   .+++.+.+.     +.  .-|.+++|++.++++++       .+|++||+||||+++|+..     
T Consensus       185 i~q~~-~~~~~---~v~~ni~~~-----~~--~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~  253 (349)
T 1pzn_A          185 IAQNR-GLDPD---EVLKHIYVA-----RA--FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGA  253 (349)
T ss_dssp             HHHTT-TCCHH---HHGGGEEEE-----EC--CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTT
T ss_pred             HHHHc-CCCHH---HHhhCEEEE-----ec--CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhccccc
Confidence            22211 22222   333332221     11  12678999999999998       6899999999999999851     


Q ss_pred             -------HHHHHHHHh----hcCCEEEEEecCHHHHhhhcCeEEEEeCCe
Q 026376          183 -------VEALIQGLV----LFQGGILMVSHDEHLISGSVEELWVVSEGK  221 (239)
Q Consensus       183 -------~~~l~~~l~----~~~~tii~vsHd~~~~~~~~d~i~~l~~G~  221 (239)
                             ...++..|.    +.+.|||+++|........++.......|+
T Consensus       254 ~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~  303 (349)
T 1pzn_A          254 LAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGH  303 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcc
Confidence                   234444333    347799999998765543333333333444

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.67  E-value=2.4e-16  Score=139.90  Aligned_cols=75  Identities=23%  Similarity=0.340  Sum_probs=66.6

Q ss_pred             CCCCCCChHHHHHH------HHHHHhccC-CCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CEEEEEecCHHHHhhhcCe
Q 026376          143 QPMYTLSGGQKSRV------AFAKITFKK-PHIILLDEPSNHLDLDAVEALIQGLVLFQ--GGILMVSHDEHLISGSVEE  213 (239)
Q Consensus       143 ~~~~~LSgGqkqrv------~laral~~~-p~llllDEPt~~LD~~~~~~l~~~l~~~~--~tii~vsHd~~~~~~~~d~  213 (239)
                      +++..|||||+||+      ++|++++.+ |++|||||||++||+..+..+.+.+.+..  .+||+|||+++ +..+||+
T Consensus       276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~  354 (371)
T 3auy_A          276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV  354 (371)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred             cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence            46679999999988      567899999 99999999999999999999999988753  48999999987 5679999


Q ss_pred             EEEEe
Q 026376          214 LWVVS  218 (239)
Q Consensus       214 i~~l~  218 (239)
                      +++|+
T Consensus       355 ~~~l~  359 (371)
T 3auy_A          355 IINVK  359 (371)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99997

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=99.67  E-value=6.5e-16  Score=128.06  Aligned_cols=145  Identities=14%  Similarity=0.232  Sum_probs=80.7

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhc--CcCC-----CceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCc
Q 026376           51 GIDLDSRIAMVGPNGIGKSTILKLIAG--ELQP-----SSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP  123 (239)
Q Consensus        51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~G--l~~p-----~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~  123 (239)
                      -+++|++++|+||||||||||++.|++  ..+|     ..|.++++..         .  .  +....+....... ...
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~---------~--~--~~~~~~~~~~~~~-g~~   85 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE---------G--T--FRPERLLAVAERY-GLS   85 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS---------S--C--CCHHHHHHHHHHT-TCC
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC---------C--C--cCHHHHHHHHHHc-CCC
Confidence            478999999999999999999999999  5655     3444443321         1  0  0111111111111 112


Q ss_pred             HHHHHHHHHhcCCCcccccCCCCCCChHHHHH-HHHHHHhc--cCCCEEEEeCCCCCCCHH-------H-----HHHHHH
Q 026376          124 EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR-VAFAKITF--KKPHIILLDEPSNHLDLD-------A-----VEALIQ  188 (239)
Q Consensus       124 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr-v~laral~--~~p~llllDEPt~~LD~~-------~-----~~~l~~  188 (239)
                      .+   ++++.+.+        ....+..+... +.-+..++  .+|+++++|||++.+|..       .     ...++.
T Consensus        86 ~~---~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~  154 (243)
T 1n0w_A           86 GS---DVLDNVAY--------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLR  154 (243)
T ss_dssp             HH---HHHHTEEE--------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHH
T ss_pred             HH---HHhhCeEE--------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            21   12222111        12345555433 22233333  589999999999999975       2     233333


Q ss_pred             HH----hhcCCEEEEEecCHHHHh-------------------hhcCeEEEEeCC
Q 026376          189 GL----VLFQGGILMVSHDEHLIS-------------------GSVEELWVVSEG  220 (239)
Q Consensus       189 ~l----~~~~~tii~vsHd~~~~~-------------------~~~d~i~~l~~G  220 (239)
                      .|    ++.+.|||+++|......                   .+||.+++|+.+
T Consensus       155 ~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~  209 (243)
T 1n0w_A          155 MLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG  209 (243)
T ss_dssp             HHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred             HHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence            33    334789999999765433                   389999999865

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.65  E-value=1.2e-19  Score=160.87  Aligned_cols=164  Identities=12%  Similarity=0.063  Sum_probs=96.6

Q ss_pred             eeeeeEEEeC--CCEEEEECCCCCcHHHHHHHHhcCcCCCc----eeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHh
Q 026376           45 FKNLNFGIDL--DSRIAMVGPNGIGKSTILKLIAGELQPSS----GTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRC  118 (239)
Q Consensus        45 l~~isl~i~~--Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~----G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~  118 (239)
                      .+.|+++|.+  |++++|+||||||||||+++|+|+++|++    |++++.+..       .. .........+..+...
T Consensus       158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~-------~~-~~~~~~~~~~~~I~~~  229 (365)
T 1lw7_A          158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKL-------GG-DEQAMQYSDYPQMALG  229 (365)
T ss_dssp             GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSS-------SS-CTTSSCTTTHHHHHHH
T ss_pred             hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhc-------CC-CcccCChhHHHHHHHH
Confidence            4679999999  99999999999999999999999999999    776542100       00 0001111111111111


Q ss_pred             CCCCcHHHHHHHHHhcCC-CcccccCCCCCCChHHHHHHHHHHHhc-cCCCEEEEeC---CC------CCCCHHHHHHHH
Q 026376          119 FPGVPEQKLRAHLGSFGV-TGNLALQPMYTLSGGQKSRVAFAKITF-KKPHIILLDE---PS------NHLDLDAVEALI  187 (239)
Q Consensus       119 ~~~~~~~~~~~~l~~~~l-~~~~~~~~~~~LSgGqkqrv~laral~-~~p~llllDE---Pt------~~LD~~~~~~l~  187 (239)
                      . ...........+.+.+ .....+..+..+|+|++|+..+++++. .+|++++|||   |+      .++|+..+..+.
T Consensus       230 ~-q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~  308 (365)
T 1lw7_A          230 H-QRYIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQ  308 (365)
T ss_dssp             H-HHHHHHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHH
T ss_pred             H-HHHHHHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHH
Confidence            0 0000000011111100 001111223456778888888888774 6999999999   65      589988888887


Q ss_pred             HHHh----hcCCEEEEEecCHHHHhhhcCeEEEEe
Q 026376          188 QGLV----LFQGGILMVSHDEHLISGSVEELWVVS  218 (239)
Q Consensus       188 ~~l~----~~~~tii~vsHd~~~~~~~~d~i~~l~  218 (239)
                      +.+.    +.+.+||+++|. ....++++++..++
T Consensus       309 ~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~  342 (365)
T 1lw7_A          309 QLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIE  342 (365)
T ss_dssp             HHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHH
Confidence            7763    336789999986 35556777766554

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.64  E-value=2.9e-19  Score=143.60  Aligned_cols=147  Identities=13%  Similarity=0.049  Sum_probs=83.5

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce---------EEEEEeeccCCCCCCCCcHHHHHHHh---
Q 026376           51 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV---------RIAVFSQHHVDGLDLSSNPLLYMMRC---  118 (239)
Q Consensus        51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~---------~~~~~~q~~~~~~~~~~~~~~~~~~~---  118 (239)
                      .+++|++++|+||||||||||+++|+|.  |+.|.|.+++..         .++|++|....    ..+....+...   
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~----~~~v~~~l~~~~~~   78 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQ----NRMIMQIAADVAGR   78 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHHH----HHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhhh----hHHHHHHHHHHHHH
Confidence            5789999999999999999999999998  788988876531         01222221100    00111111000   


Q ss_pred             C--CCCcHHHHHHHHHhcCCCcccc--cCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC
Q 026376          119 F--PGVPEQKLRAHLGSFGVTGNLA--LQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQ  194 (239)
Q Consensus       119 ~--~~~~~~~~~~~l~~~~l~~~~~--~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~  194 (239)
                      .  .... ..+..++..+++. ...  +.++..+|+|++|+++++|++..+|+++        +|+.....+.+.+....
T Consensus        79 ~~~~~~~-~~~~~~~~~~~l~-~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~  148 (191)
T 1zp6_A           79 YAKEGYF-VILDGVVRPDWLP-AFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLG  148 (191)
T ss_dssp             HHHTSCE-EEECSCCCTTTTH-HHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCG
T ss_pred             HhccCCe-EEEeccCcHHHHH-HHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccC
Confidence            0  0000 0000001111111 111  3345689999999999999999999886        68888777777765442


Q ss_pred             --CEEEEEecCHHHHhhhcCeE
Q 026376          195 --GGILMVSHDEHLISGSVEEL  214 (239)
Q Consensus       195 --~tii~vsHd~~~~~~~~d~i  214 (239)
                        ..+++.|++. .+..+++++
T Consensus       149 ~~~~~~i~t~~~-~~~~~~~~i  169 (191)
T 1zp6_A          149 AFEHHVLPVSGK-DTDQALQSA  169 (191)
T ss_dssp             GGGGGEEECTTC-CTTTTTTTT
T ss_pred             cccccEEECCCC-CHHHHHHHH
Confidence              2344445432 233344544

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.62  E-value=9.1e-16  Score=138.68  Aligned_cols=73  Identities=23%  Similarity=0.286  Sum_probs=64.9

Q ss_pred             CCCCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEEE
Q 026376          145 MYTLSGGQKSRVAFAKITF----KKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWVV  217 (239)
Q Consensus       145 ~~~LSgGqkqrv~laral~----~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~l  217 (239)
                      +..||||||||++||++|+    .+|+++||||||++||+..+..+.+.+.+.   +.++|+|||+..++ ..||+++.|
T Consensus       331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~~~  409 (430)
T 1w1w_A          331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALVGV  409 (430)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEEEE
T ss_pred             cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEEEE
Confidence            4569999999999999999    589999999999999999999999988765   35899999998765 479999988


Q ss_pred             e
Q 026376          218 S  218 (239)
Q Consensus       218 ~  218 (239)
                      .
T Consensus       410 ~  410 (430)
T 1w1w_A          410 Y  410 (430)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.59  E-value=1.4e-16  Score=143.38  Aligned_cols=169  Identities=14%  Similarity=0.059  Sum_probs=96.2

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCE--EEEECCCCCcHHHHHHHHhcCcCCCceeEEe---cC--ceEEEEEeec
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSR--IAMVGPNGIGKSTILKLIAGELQPSSGTVFR---SA--KVRIAVFSQH  100 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~--~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~---~~--~~~~~~~~q~  100 (239)
                      .+++++ ++.|+ +.+ |+++||++++|++  ++|+||||||||||+|+|+|+.-  .|....   .+  ...++|++|+
T Consensus        16 ~l~~~~-~~~y~-~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q~   90 (427)
T 2qag_B           16 TVPLAG-HVGFD-SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQE   90 (427)
T ss_dssp             -CCCCC-CC-CC---C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC
T ss_pred             eEEEee-EEEEC-Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEeec
Confidence            467777 88995 445 9999999999999  99999999999999999999842  121111   01  2358899887


Q ss_pred             cCC--CCCCCCcHHHH----HHHhCCC---CcHHHHHHHHHhc-CCCcc---cccCC-----------CCCCChHHHHHH
Q 026376          101 HVD--GLDLSSNPLLY----MMRCFPG---VPEQKLRAHLGSF-GVTGN---LALQP-----------MYTLSGGQKSRV  156 (239)
Q Consensus       101 ~~~--~~~~~~~~~~~----~~~~~~~---~~~~~~~~~l~~~-~l~~~---~~~~~-----------~~~LSgGqkqrv  156 (239)
                      ...  .+++..++...    -...+..   .-...+.+++... ++...   ..+.+           ...|+-.+   +
T Consensus        91 ~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---i  167 (427)
T 2qag_B           91 SNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---L  167 (427)
T ss_dssp             --CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---H
T ss_pred             CccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---H
Confidence            421  11111111000    0000000   0022344445443 33210   01111           12466555   7


Q ss_pred             HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHh----hcCCEEEEEecCH
Q 026376          157 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV----LFQGGILMVSHDE  204 (239)
Q Consensus       157 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~----~~~~tii~vsHd~  204 (239)
                      .++++|..+++++++|||+..|.+.....+.+.+.    ..+.+|+.+|.|-
T Consensus       168 eilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d  219 (427)
T 2qag_B          168 VTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD  219 (427)
T ss_dssp             HHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred             HHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence            99999999999999999999999987776655554    3456788888754

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.58  E-value=1.1e-17  Score=140.06  Aligned_cols=131  Identities=27%  Similarity=0.270  Sum_probs=81.0

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHh---cCcCCCceeEEecCc---e----EEEEEeeccCCCCCCCCcHHHHHHH---h--
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIA---GELQPSSGTVFRSAK---V----RIAVFSQHHVDGLDLSSNPLLYMMR---C--  118 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~---Gl~~p~~G~i~~~~~---~----~~~~~~q~~~~~~~~~~~~~~~~~~---~--  118 (239)
                      ++++++|+||||||||||+++|+   |+..|+.|+|.+.+.   .    .+.+++|+..  +....+....+..   .  
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~v~~~l~~~l~~~~  103 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSL--LVPDHVITRLMMSELENRR  103 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTC--CCCHHHHHHHHHHHHHTCT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhcC
Confidence            47999999999999999999999   999999999865431   1    1222333321  1111111221111   0  


Q ss_pred             -----CCC--CcHHHHHHHHHhcCCC-------------cccccCCCCCCChHHHHHHHHHHHh-ccCCCEEEEe----C
Q 026376          119 -----FPG--VPEQKLRAHLGSFGVT-------------GNLALQPMYTLSGGQKSRVAFAKIT-FKKPHIILLD----E  173 (239)
Q Consensus       119 -----~~~--~~~~~~~~~l~~~~l~-------------~~~~~~~~~~LSgGqkqrv~laral-~~~p~llllD----E  173 (239)
                           ..+  ....++..+.......             ....++++..|||    |+   +|+ +.+|++++||    |
T Consensus       104 ~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~E  176 (246)
T 2bbw_A          104 GQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGE  176 (246)
T ss_dssp             TSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCC
T ss_pred             CCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccccc
Confidence                 001  1222233332211111             1223566788999    55   777 9999999999    9


Q ss_pred             CCCCCCHHHHHHHHHHHhhc
Q 026376          174 PSNHLDLDAVEALIQGLVLF  193 (239)
Q Consensus       174 Pt~~LD~~~~~~l~~~l~~~  193 (239)
                      ||++||..+...+.+.+..+
T Consensus       177 P~~~ld~~~~~~i~~~l~~~  196 (246)
T 2bbw_A          177 PLVQQEDDKPEAVAARLRQY  196 (246)
T ss_dssp             BCBCCGGGSHHHHHHHHHHH
T ss_pred             ccccCCCCcHHHHHHHHHHH
Confidence            99999998877777666543

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.57  E-value=2.4e-20  Score=150.01  Aligned_cols=158  Identities=13%  Similarity=0.069  Sum_probs=89.8

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce-----EEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHH
Q 026376           55 DSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----RIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA  129 (239)
Q Consensus        55 Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (239)
                      |++++|+||||||||||+++|++   |.+|.+++++..     ..++++|...  .....+....+.        ..+..
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~l~--------~~~~~   68 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWES--DELLALTWKNIT--------DLTVN   68 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGC--HHHHHHHHHHHH--------HHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccc--hhHHHHHHHHHH--------HHHHH
Confidence            67999999999999999999997   667887765421     1122222110  000000000000        00111


Q ss_pred             HHHhcCCC-------cccccCCCCCC--ChHHHHHHHHHH------HhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc-
Q 026376          130 HLGSFGVT-------GNLALQPMYTL--SGGQKSRVAFAK------ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF-  193 (239)
Q Consensus       130 ~l~~~~l~-------~~~~~~~~~~L--SgGqkqrv~lar------al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-  193 (239)
                      .+. -+..       .....+....+  |+|++|++.++.      +++.+|+...+|+   ++|+..... .+.+... 
T Consensus        69 ~~~-~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~  143 (189)
T 2bdt_A           69 FLL-AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKG  143 (189)
T ss_dssp             HHH-TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTT
T ss_pred             HHh-cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcC
Confidence            111 0100       00000111234  788888887777      8888888888884   899877666 6655543 


Q ss_pred             --CCEEEEEecC-HHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          194 --QGGILMVSHD-EHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       194 --~~tii~vsHd-~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                        +.++|.+||. ++.+.++||+|+  ++|+++ +.|+++.+.
T Consensus       144 ~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~-~~~~~~~~~  183 (189)
T 2bdt_A          144 IDERYFYNTSHLQPTNLNDIVKNLK--TNPRFI-FCMAGDPLE  183 (189)
T ss_dssp             CCTTSEEECSSSCGGGHHHHHHHHH--HCGGGS-CC-------
T ss_pred             CCccEEEeCCCCChhhHHHHHHHHh--hCCcEE-EeecCCchh
Confidence              4589999999 999999999998  999986 678876653

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.57  E-value=2.3e-16  Score=125.77  Aligned_cols=109  Identities=14%  Similarity=0.126  Sum_probs=70.6

Q ss_pred             eEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHH
Q 026376           49 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLR  128 (239)
Q Consensus        49 sl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (239)
                      +|++.+|+.++|+||||||||||+++|++.+.|.+|...       .|+            +.....         ..+.
T Consensus        32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~-------~~~------------~~~~~~---------~~~~   83 (180)
T 3ec2_A           32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG-------YFF------------DTKDLI---------FRLK   83 (180)
T ss_dssp             SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC-------CEE------------EHHHHH---------HHHH
T ss_pred             hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE-------EEE------------EHHHHH---------HHHH
Confidence            567788999999999999999999999999887766311       010            000000         0011


Q ss_pred             HHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC-CCCHHHHHHHHHHHhh---cCCEEEEEecCH
Q 026376          129 AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN-HLDLDAVEALIQGLVL---FQGGILMVSHDE  204 (239)
Q Consensus       129 ~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~-~LD~~~~~~l~~~l~~---~~~tii~vsHd~  204 (239)
                      .....-.            ..        -+...+.+|++|+||||++ ++|+.....+.+.+..   .+.++|++||..
T Consensus        84 ~~~~~~~------------~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~  143 (180)
T 3ec2_A           84 HLMDEGK------------DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS  143 (180)
T ss_dssp             HHHHHTC------------CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred             HHhcCch------------HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence            1111000            00        0111234899999999995 8999888777666543   467999999976


Q ss_pred             H
Q 026376          205 H  205 (239)
Q Consensus       205 ~  205 (239)
                      .
T Consensus       144 ~  144 (180)
T 3ec2_A          144 L  144 (180)
T ss_dssp             S
T ss_pred             h
Confidence            3

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.57  E-value=3.5e-16  Score=140.74  Aligned_cols=142  Identities=24%  Similarity=0.283  Sum_probs=88.0

Q ss_pred             eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCc-----------CCCceeEEecCceEEEEEeeccCCCCCCCCcHHH
Q 026376           45 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL-----------QPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLL  113 (239)
Q Consensus        45 l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~-----------~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~  113 (239)
                      -++++|+++.|+.++|+|+|||||||||++|+|..           .|..|.+.+++...+ .+.+.+  .+.  ...  
T Consensus       147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~-~l~Dtp--Gli--~~a--  219 (416)
T 1udx_A          147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERF-TLADIP--GII--EGA--  219 (416)
T ss_dssp             EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEE-EEEECC--CCC--CCG--
T ss_pred             EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceE-EEEecc--ccc--cch--
Confidence            37899999999999999999999999999999983           344444443321111 111211  110  000  


Q ss_pred             HHHHhCCCCcHH------HHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHH---
Q 026376          114 YMMRCFPGVPEQ------KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVE---  184 (239)
Q Consensus       114 ~~~~~~~~~~~~------~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~---  184 (239)
                         .........      ++..++..++++    ..++.+||+|++|++++|++|+..|.++++    |.+|.....   
T Consensus       220 ---~~~~~L~~~fl~~~era~~lL~vvDls----~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~  288 (416)
T 1udx_A          220 ---SEGKGLGLEFLRHIARTRVLLYVLDAA----DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVK  288 (416)
T ss_dssp             ---GGSCCSCHHHHHHHTSSSEEEEEEETT----SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHH
T ss_pred             ---hhhhhhhHHHHHHHHHHHhhhEEeCCc----cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHH
Confidence               000001111      111223334442    356778999999999999999999999999    999986542   


Q ss_pred             HHHHHHhhcCCEEEEEe-cCH
Q 026376          185 ALIQGLVLFQGGILMVS-HDE  204 (239)
Q Consensus       185 ~l~~~l~~~~~tii~vs-Hd~  204 (239)
                      .+.+.+.+.+.+++++| |..
T Consensus       289 ~l~~~l~~~g~~vi~iSA~~g  309 (416)
T 1udx_A          289 ALADALAREGLAVLPVSALTG  309 (416)
T ss_dssp             HHHHHHHTTTSCEEECCTTTC
T ss_pred             HHHHHHHhcCCeEEEEECCCc
Confidence            23333444455666655 443

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.55  E-value=3e-17  Score=129.14  Aligned_cols=58  Identities=14%  Similarity=0.109  Sum_probs=51.4

Q ss_pred             EEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecC
Q 026376           31 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA   90 (239)
Q Consensus        31 ~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~   90 (239)
                      .+++++.|+ +..+++++||++++|++++|+||||||||||+|+|+|++ |++|+|...+
T Consensus        10 ~~~~~~~~g-~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g   67 (158)
T 1htw_A           10 DEFSMLRFG-KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPT   67 (158)
T ss_dssp             SHHHHHHHH-HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCT
T ss_pred             CHHHHHHHH-HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECC
Confidence            356777883 456899999999999999999999999999999999999 9999997655

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.55  E-value=7.7e-18  Score=147.90  Aligned_cols=158  Identities=14%  Similarity=0.050  Sum_probs=103.3

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------------e
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------V   92 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~   92 (239)
                      +++++++++.|+ ...+++++||++.+|++++|+|+||||||||+++|+|++.|++|+|.+.+.               .
T Consensus        29 ~ie~~~~~~~~~-~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~  107 (337)
T 2qm8_A           29 LAESRRADHRAA-VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT  107 (337)
T ss_dssp             HHTCSSHHHHHH-HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred             HHeeCCcccccC-hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence            578899999994 456899999999999999999999999999999999999999999975431               1


Q ss_pred             EEEEEeeccCCCCCCC---C-------cHHH-------------------------HHHHh-------CCCCcHHH----
Q 026376           93 RIAVFSQHHVDGLDLS---S-------NPLL-------------------------YMMRC-------FPGVPEQK----  126 (239)
Q Consensus        93 ~~~~~~q~~~~~~~~~---~-------~~~~-------------------------~~~~~-------~~~~~~~~----  126 (239)
                      ++++++|++.......   .       ....                         .+...       ........    
T Consensus       108 ~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i  187 (337)
T 2qm8_A          108 RMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGI  187 (337)
T ss_dssp             GSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------C
T ss_pred             hheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHH
Confidence            3455666432111000   0       0000                         00000       00000000    


Q ss_pred             ---HHHHHHhcCCCccccc-CCCCCCChHHHHHHHHHHHhcc------CCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 026376          127 ---LRAHLGSFGVTGNLAL-QPMYTLSGGQKSRVAFAKITFK------KPHIILLDEPSNHLDLDAVEALIQGLVL  192 (239)
Q Consensus       127 ---~~~~l~~~~l~~~~~~-~~~~~LSgGqkqrv~laral~~------~p~llllDEPt~~LD~~~~~~l~~~l~~  192 (239)
                         +.+....+.+.  ..+ .+...+|+|++|++..|++++.      .|++++    ||++|..+...+++.+.+
T Consensus       188 ~~~i~~~~~ivvlN--K~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~  257 (337)
T 2qm8_A          188 KKGIFELADMIAVN--KADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIED  257 (337)
T ss_dssp             CTTHHHHCSEEEEE--CCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHH
T ss_pred             HHHHhccccEEEEE--chhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHH
Confidence               11222222221  122 1234689999999999999987      688887    999999988888777754

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=99.52  E-value=7.4e-14  Score=125.05  Aligned_cols=145  Identities=14%  Similarity=0.206  Sum_probs=81.5

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHH--HHhcCcCCCce-----eEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCc
Q 026376           51 GIDLDSRIAMVGPNGIGKSTILK--LIAGELQPSSG-----TVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP  123 (239)
Q Consensus        51 ~i~~Ge~~~iiG~NGsGKSTLl~--~l~Gl~~p~~G-----~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~  123 (239)
                      -|.+|++++|+||||||||||++  +++++.+++.|     .+++++         +.    .+....+..+.... ...
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~---------E~----~~~~~rl~~~a~~~-gl~  239 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT---------EG----TFRPVRLVSIAQRF-GLD  239 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES---------SS----CCCHHHHHHHHHHT-TCC
T ss_pred             CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC---------CC----ccCHHHHHHHHHHc-CCC
Confidence            58899999999999999999999  45677777554     333322         11    01111111111111 111


Q ss_pred             HHHHHHHHHhcCCCcccccCCCCCCChHHH--HHHHHHHHhc--cCCCEEEEeCCCCCCCHHHH------------HHHH
Q 026376          124 EQKLRAHLGSFGVTGNLALQPMYTLSGGQK--SRVAFAKITF--KKPHIILLDEPSNHLDLDAV------------EALI  187 (239)
Q Consensus       124 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk--qrv~laral~--~~p~llllDEPt~~LD~~~~------------~~l~  187 (239)
                      .+   .+++.+-+         .....++.  +.+.-+..++  .+|+++++|||++.+|....            ..++
T Consensus       240 ~~---~vleni~~---------~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il  307 (400)
T 3lda_A          240 PD---DALNNVAY---------ARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFM  307 (400)
T ss_dssp             HH---HHHHTEEE---------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHH
T ss_pred             hH---hHhhcEEE---------eccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHH
Confidence            11   12222111         11122333  3333333332  57999999999999996421            2334


Q ss_pred             HHH----hhcCCEEEEEecCH-------------------HHHhhhcCeEEEEeCCe
Q 026376          188 QGL----VLFQGGILMVSHDE-------------------HLISGSVEELWVVSEGK  221 (239)
Q Consensus       188 ~~l----~~~~~tii~vsHd~-------------------~~~~~~~d~i~~l~~G~  221 (239)
                      +.|    ++.+.|||+|+|..                   ..+..++|.++.|+.++
T Consensus       308 ~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~  364 (400)
T 3lda_A          308 RALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK  364 (400)
T ss_dssp             HHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred             HHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence            433    34578999999982                   23467799999998763

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.51  E-value=1.2e-14  Score=113.14  Aligned_cols=86  Identities=17%  Similarity=0.164  Sum_probs=60.1

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHh
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGS  133 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  133 (239)
                      +|+.++|+||||||||||+++|++...+ +|.       .+.|+.....     ...                       
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~-------~~~~~~~~~~-----~~~-----------------------   78 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGK-------NAAYIDAASM-----PLT-----------------------   78 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTC-------CEEEEETTTS-----CCC-----------------------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCC-------cEEEEcHHHh-----hHH-----------------------
Confidence            8999999999999999999999999877 451       1223322110     000                       


Q ss_pred             cCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHh---hcCCE-EEEEecC
Q 026376          134 FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV---LFQGG-ILMVSHD  203 (239)
Q Consensus       134 ~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~---~~~~t-ii~vsHd  203 (239)
                                                 +++.+|++|++|||++ ++......+.+.+.   +.+.+ +|++||.
T Consensus        79 ---------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~  124 (149)
T 2kjq_A           79 ---------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY  124 (149)
T ss_dssp             ---------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred             ---------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence                                       2456899999999998 55544565655543   44667 8888884

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.50  E-value=6.4e-15  Score=129.92  Aligned_cols=112  Identities=16%  Similarity=0.068  Sum_probs=75.2

Q ss_pred             eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC-CCceeEEec-C-------ceEEEEEeeccCCCCCCCCcHHHH
Q 026376           44 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ-PSSGTVFRS-A-------KVRIAVFSQHHVDGLDLSSNPLLY  114 (239)
Q Consensus        44 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-p~~G~i~~~-~-------~~~~~~~~q~~~~~~~~~~~~~~~  114 (239)
                      -++++++.+ +|++++|+||||||||||+|+|+|+.. |+.|+|... +       ...+++++|.....  .+.+...+
T Consensus       205 gl~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~--dtpgv~e~  281 (358)
T 2rcn_A          205 GLKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVI--DSPGVREF  281 (358)
T ss_dssp             THHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEE--ECHHHHTC
T ss_pred             CHHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEec--CcccHHHh
Confidence            356777654 799999999999999999999999999 999999764 2       23578888764211  11111111


Q ss_pred             HHHhCCCCcH----HHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 026376          115 MMRCFPGVPE----QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF  163 (239)
Q Consensus       115 ~~~~~~~~~~----~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~  163 (239)
                         .......    ..+.++++.+++.. ..++++.+|| ||+||++||++++
T Consensus       282 ---~l~~l~~~e~~~~~~e~l~~~gl~~-f~~~~~~~lS-G~~~r~ala~gli  329 (358)
T 2rcn_A          282 ---GLWHLEPEQITQGFVEFHDYLGHCK-YRDCKHDADP-GCAIREAVENGAI  329 (358)
T ss_dssp             ---CCCCCCHHHHHHTSGGGGGGTTCSS-STTCCSSSCT-TCHHHHHHHHTSS
T ss_pred             ---hhcCCCHHHHHHHHHHHHHHcCCch-hcCCCcccCC-HHHHHHHHHhcCC
Confidence               0112222    23456788888864 5678889999 9999999999864

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=99.50  E-value=8.9e-18  Score=151.31  Aligned_cols=135  Identities=16%  Similarity=0.115  Sum_probs=86.2

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce---------------
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV---------------   92 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~---------------   92 (239)
                      .++++++++.|+ ...+|+++ +. .+|++++|+|||||||||||++|+|+++|++|+|...+..               
T Consensus       143 ~~~l~~Lg~~~~-~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~  219 (418)
T 1p9r_A          143 RLDLHSLGMTAH-NHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNP  219 (418)
T ss_dssp             CCCGGGSCCCHH-HHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBG
T ss_pred             CCCHHHcCCCHH-HHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEcc
Confidence            345566666662 23467777 53 7899999999999999999999999999999999754321               


Q ss_pred             EEEEEe---------eccCCCC--CCC--CcHHHHHHH-hC--------CCCcHHHHHHHHHhcCCCcccccCCCCCCCh
Q 026376           93 RIAVFS---------QHHVDGL--DLS--SNPLLYMMR-CF--------PGVPEQKLRAHLGSFGVTGNLALQPMYTLSG  150 (239)
Q Consensus        93 ~~~~~~---------q~~~~~~--~~~--~~~~~~~~~-~~--------~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg  150 (239)
                      .+++.+         |++...+  .+.  .+....+.. ..        ...+...+.+.|..+++...   ..+.+|||
T Consensus       220 ~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~---~~~~~LSg  296 (418)
T 1p9r_A          220 RVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPF---LISSSLLG  296 (418)
T ss_dssp             GGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHH---HHHHHEEE
T ss_pred             ccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHH---HHHHHHHH
Confidence            112222         4432100  000  122222211 10        11122334446777888643   25689999


Q ss_pred             HHHHHHHHHHHhccCCCEEE
Q 026376          151 GQKSRVAFAKITFKKPHIIL  170 (239)
Q Consensus       151 Gqkqrv~laral~~~p~lll  170 (239)
                      ||+||  |||+|+.+|++..
T Consensus       297 g~~QR--LaraL~~~p~~~~  314 (418)
T 1p9r_A          297 VLAQR--LVRTLCPDCKEPY  314 (418)
T ss_dssp             EEEEE--EEEEECTTTCEEE
T ss_pred             HHHHH--hhhhhcCCCCccC
Confidence            99999  9999999999976

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.50  E-value=3.8e-14  Score=124.00  Aligned_cols=137  Identities=15%  Similarity=0.167  Sum_probs=76.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhc-CcCCCceeEEecCc---------eEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHH
Q 026376           57 RIAMVGPNGIGKSTILKLIAG-ELQPSSGTVFRSAK---------VRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQK  126 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~G-l~~p~~G~i~~~~~---------~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (239)
                      .+.|.||||+|||||+++|++ +..|+.|.+.+++.         ..+++++|.....+..  ..       ........
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------~~~~~~~~  108 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITP--SD-------MGNNDRIV  108 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECC--C-----------CCHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecH--hh-------cCCcchHH
Confidence            499999999999999999999 88999998876542         2244555443211110  00       00011112


Q ss_pred             HHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCH
Q 026376          127 LRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDE  204 (239)
Q Consensus       127 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~  204 (239)
                      +++.++.+.-.... .... .|||           +..+|+++|+|||++ ||..+...+.+.+.+.  +.++|++||+.
T Consensus       109 ~~~~i~~~~~~~~~-~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~  174 (354)
T 1sxj_E          109 IQELLKEVAQMEQV-DFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM  174 (354)
T ss_dssp             HHHHHHHHTTTTC-------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred             HHHHHHHHHHhccc-cccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence            33444333211111 1111 5666           778999999999999 9999999999988765  34799999997


Q ss_pred             HHH-hhhcCeEEE
Q 026376          205 HLI-SGSVEELWV  216 (239)
Q Consensus       205 ~~~-~~~~d~i~~  216 (239)
                      +.+ ..+..|+..
T Consensus       175 ~~l~~~l~sR~~~  187 (354)
T 1sxj_E          175 SPIIAPIKSQCLL  187 (354)
T ss_dssp             CSSCHHHHTTSEE
T ss_pred             HHHHHHHHhhceE
Confidence            532 234445433

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=99.49  E-value=1.2e-16  Score=130.69  Aligned_cols=139  Identities=15%  Similarity=0.102  Sum_probs=82.6

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHH--Hh--CC-CCcHHH
Q 026376           52 IDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMM--RC--FP-GVPEQK  126 (239)
Q Consensus        52 i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~--~~--~~-~~~~~~  126 (239)
                      .++|++++|+||||||||||+++|+|+++|+ |       ...++++++...   +.........  ..  .. ..+...
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g-------~~~g~v~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~   87 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G-------LPAEVVPMDGFH---LDNRLLEPRGLLPRKGAPETFDFEG   87 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T-------CCEEEEESGGGB---CCHHHHGGGTCGGGTTSGGGBCHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C-------CceEEEecCCCc---CCHHHHHHhcccccCCCCchhhHHH
Confidence            5789999999999999999999999999875 3       123445554321   1111111100  00  00 012223


Q ss_pred             HHHHHHhcCCCc----ccccCCCCCCChHHHHHHHHH-HHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEe
Q 026376          127 LRAHLGSFGVTG----NLALQPMYTLSGGQKSRVAFA-KITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVS  201 (239)
Q Consensus       127 ~~~~l~~~~l~~----~~~~~~~~~LSgGqkqrv~la-ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vs  201 (239)
                      +.+.+..+...+    ...+ ....+|+||+||+++| ++++.++.++++|||..           ..+...-..+++++
T Consensus        88 ~~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~~~~d~~i~vd  155 (208)
T 3c8u_A           88 FQRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLTAIWDVSIRLE  155 (208)
T ss_dssp             HHHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGGGTCSEEEEEC
T ss_pred             HHHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHHHhcCEEEEEe
Confidence            333333321111    1122 2346799999999998 88888888888899841           11223334788888


Q ss_pred             cCHHH-HhhhcCe
Q 026376          202 HDEHL-ISGSVEE  213 (239)
Q Consensus       202 Hd~~~-~~~~~d~  213 (239)
                      ++.+. +.+.+.|
T Consensus       156 ~~~~~~~~R~~~R  168 (208)
T 3c8u_A          156 VPMADLEARLVQR  168 (208)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            88876 5555555

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=99.48  E-value=2.4e-17  Score=143.60  Aligned_cols=55  Identities=11%  Similarity=0.118  Sum_probs=40.1

Q ss_pred             CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhh
Q 026376          147 TLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGS  210 (239)
Q Consensus       147 ~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~  210 (239)
                      +||+||+||+..+++++.+|+++  |||      ......++.+. .+.+|+++||+...+..+
T Consensus       141 ~ls~g~~Q~~~ad~ill~k~dl~--de~------~~l~~~l~~l~-~~~~ii~~sh~~~~~~~l  195 (318)
T 1nij_A          141 QFTIAQSQVGYADRILLTKTDVA--GEA------EKLHERLARIN-ARAPVYTVTHGDIDLGLL  195 (318)
T ss_dssp             HCHHHHHHHHTCSEEEEECTTTC--SCT------HHHHHHHHHHC-SSSCEEECCSSCCCGGGG
T ss_pred             hchHHHHHHHhCCEEEEECcccC--CHH------HHHHHHHHHhC-CCCeEEEecccCCCHHHH
Confidence            79999999999999999999987  999      33333333332 256899999965444433

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=99.48  E-value=8.9e-17  Score=148.20  Aligned_cols=159  Identities=13%  Similarity=0.109  Sum_probs=97.0

Q ss_pred             ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce--------EEEEEeeccCCC--C-------
Q 026376           43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV--------RIAVFSQHHVDG--L-------  105 (239)
Q Consensus        43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~--------~~~~~~q~~~~~--~-------  105 (239)
                      .+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|.+.+..        .+.+..|.....  .       
T Consensus       248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~  327 (511)
T 2oap_1          248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLR  327 (511)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHH
T ss_pred             HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHH
Confidence            46789999999999999999999999999999999999999999876532        234444432100  0       


Q ss_pred             -------------CCCCcHHHHHH-HhCCCC------cHHHHHHHHHhcC-----CCcccc---c---CCCCCCChHHHH
Q 026376          106 -------------DLSSNPLLYMM-RCFPGV------PEQKLRAHLGSFG-----VTGNLA---L---QPMYTLSGGQKS  154 (239)
Q Consensus       106 -------------~~~~~~~~~~~-~~~~~~------~~~~~~~~l~~~~-----l~~~~~---~---~~~~~LSgGqkq  154 (239)
                                   .+.......+. ....+.      -...+.++++++.     +...+.   +   .....+|+||+|
T Consensus       328 ~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~~  407 (511)
T 2oap_1          328 AALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTRL  407 (511)
T ss_dssp             TTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCEE
T ss_pred             HhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCce
Confidence                         01111111111 100010      0012223333322     221111   1   123468999999


Q ss_pred             HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEE--EecCHHHHhhhcCe
Q 026376          155 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILM--VSHDEHLISGSVEE  213 (239)
Q Consensus       155 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~--vsHd~~~~~~~~d~  213 (239)
                      |.++|.          + | |+|||+.....+++.+.++   +.|+++  +||+++.+...|+.
T Consensus       408 R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g~  459 (511)
T 2oap_1          408 RRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLGV  459 (511)
T ss_dssp             EEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHTS
T ss_pred             EEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcCC
Confidence            877641          1 7 9999998765555544433   458875  89999999888864

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=99.46  E-value=1.8e-16  Score=126.31  Aligned_cols=97  Identities=18%  Similarity=0.118  Sum_probs=62.1

Q ss_pred             CEEEEECCCCCcHHHHHHHHhcCcCCC---ceeEEecCce---------------EEE----EEeeccCCCCCCCCcHHH
Q 026376           56 SRIAMVGPNGIGKSTILKLIAGELQPS---SGTVFRSAKV---------------RIA----VFSQHHVDGLDLSSNPLL  113 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~~~---------------~~~----~~~q~~~~~~~~~~~~~~  113 (239)
                      ++++|+|+||||||||+++|+|+++|+   .|.|..++..               .++    +++|+....  +.     
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~--i~-----   75 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF--IR-----   75 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE--EE-----
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE--Ee-----
Confidence            589999999999999999999999998   8999866431               122    333332110  00     


Q ss_pred             HHHHhCCCCcHH--HHHHHHHh-c-CCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 026376          114 YMMRCFPGVPEQ--KLRAHLGS-F-GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHII  169 (239)
Q Consensus       114 ~~~~~~~~~~~~--~~~~~l~~-~-~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~ll  169 (239)
                            ....+.  .+.++++. + +++..    -...|||||+||++||||++.+|++.
T Consensus        76 ------~~~~~~~a~l~~~i~~~l~g~dt~----i~EglSgGq~qri~lARall~~p~i~  125 (171)
T 2f1r_A           76 ------RVSEEEGNDLDWIYERYLSDYDLV----ITEGFSKAGKDRIVVVKKPEEVEHFR  125 (171)
T ss_dssp             ------ECCHHHHTCHHHHHHHHTTTCSEE----EEESCGGGCCCEEEECSSGGGGGGGC
T ss_pred             ------cCChhhhhCHHHHHHhhCCCCCEE----EECCcCCCCCcEEEEEecccCCCccC
Confidence                  000111  23444444 3 33221    12349999999999999999998873

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=99.46  E-value=2.4e-15  Score=129.33  Aligned_cols=121  Identities=17%  Similarity=0.048  Sum_probs=78.6

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHh-----------CC-
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRC-----------FP-  120 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~-----------~~-  120 (239)
                      .++.+++|.|++|||||||.+.|++++.+. |.    ....+.+++|+.+.   ...+....+...           .+ 
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~----~~~~~~iv~~D~f~---~~~~~~~~l~~~~~~~~l~~~~g~p~  100 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-YG----GEKSIGYASIDDFY---LTHEDQLKLNEQFKNNKLLQGRGLPG  100 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-HG----GGSCEEEEEGGGGB---CCHHHHHHHHHHTTTCGGGSSSCSTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-CC----CCceEEEecccccc---CChHHHHHHhccccccchhhhccCcc
Confidence            467899999999999999999999998764 20    12234455887642   122233332211           01 


Q ss_pred             CCcHHHHHHHHHhcCCC------c-ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 026376          121 GVPEQKLRAHLGSFGVT------G-NLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD  181 (239)
Q Consensus       121 ~~~~~~~~~~l~~~~l~------~-~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~  181 (239)
                      ..+...+.+.++.+.-.      . .........+||||+||+++|++...+|+|||+||||+++|+.
T Consensus       101 a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~  168 (290)
T 1odf_A          101 THDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI  168 (290)
T ss_dssp             SBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred             hhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence            12345566667665432      1 1112334689999999999984333399999999999999985

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.46  E-value=5.3e-15  Score=134.93  Aligned_cols=178  Identities=18%  Similarity=0.101  Sum_probs=101.4

Q ss_pred             eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------------eEEEEEeeccCCCCCC
Q 026376           45 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------------VRIAVFSQHHVDGLDL  107 (239)
Q Consensus        45 l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------------~~~~~~~q~~~~~~~~  107 (239)
                      -+++||++.+|++++|+|+||||||||+++|+|+++|++|+|.+.+.                 ..++|++|...  ...
T Consensus       283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~--~~p  360 (503)
T 2yhs_A          283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTG--ADS  360 (503)
T ss_dssp             BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTT--CCH
T ss_pred             CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccC--cCH
Confidence            36899999999999999999999999999999999999999987431                 13567776532  111


Q ss_pred             CCcHHHHHHHh-CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc-cCC-CEEEEeCCCCCCCHHHHH
Q 026376          108 SSNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF-KKP-HIILLDEPSNHLDLDAVE  184 (239)
Q Consensus       108 ~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~-~~p-~llllDEPt~~LD~~~~~  184 (239)
                      ..+....+... ..+.+    .-+++..|.....     ..|-.-.+|++.+++++. ..| .+||...|++|.|...  
T Consensus       361 ~~tV~e~l~~a~~~~~D----vVLIDTaGrl~~~-----~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~--  429 (503)
T 2yhs_A          361 ASVIFDAIQAAKARNID----VLIADTAGRLQNK-----SHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVS--  429 (503)
T ss_dssp             HHHHHHHHHHHHHTTCS----EEEECCCCSCCCH-----HHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHH--
T ss_pred             HHHHHHHHHHHHhcCCC----EEEEeCCCccchh-----hhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHH--
Confidence            11111111100 00000    0011222221100     011112347888888774 446 4666666998865542  


Q ss_pred             HHHHHHh-hcCCEEEEEecCHH---------HHhhhcCeEEEEeCCeEEe--eCCChhHHHHHh
Q 026376          185 ALIQGLV-LFQGGILMVSHDEH---------LISGSVEELWVVSEGKATP--FHGTFHDYKKML  236 (239)
Q Consensus       185 ~l~~~l~-~~~~tii~vsHd~~---------~~~~~~d~i~~l~~G~i~~--~~g~~~~~~~~~  236 (239)
                       ..+.+. ..+.|.|++||--.         .+..+.-.|..+..|.-+.  ..-+++.|.+++
T Consensus       430 -~ak~f~~~~~itgvIlTKLD~takgG~~lsi~~~~~~PI~fig~Ge~vdDL~~f~~~~~v~~l  492 (503)
T 2yhs_A          430 -QAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEAL  492 (503)
T ss_dssp             -HHHHHHHHTCCSEEEEECGGGCSCCTHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHH
T ss_pred             -HHHHHHhhcCCCEEEEEcCCCcccccHHHHHHHHHCCCEEEEecCCChhhcccCCHHHHHHHH
Confidence             233343 35678999999322         2333345677776665310  123555555543

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.45  E-value=1.1e-14  Score=127.34  Aligned_cols=168  Identities=13%  Similarity=0.042  Sum_probs=96.8

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce-----------------EEEEEeeccCCCCCCCCcHHH
Q 026376           51 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------------RIAVFSQHHVDGLDLSSNPLL  113 (239)
Q Consensus        51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------------~~~~~~q~~~~~~~~~~~~~~  113 (239)
                      ..++|++++|+||||||||||+++|+|+++|++|+|.+.+..                 .+.+++|...  .....+...
T Consensus       125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~--~~p~~~v~e  202 (328)
T 3e70_C          125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYG--ADPAAVAYD  202 (328)
T ss_dssp             SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTT--CCHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEecccc--CCHHHHHHH
Confidence            347899999999999999999999999999999999765321                 1335555321  111111111


Q ss_pred             HHHHhC-CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHh-
Q 026376          114 YMMRCF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV-  191 (239)
Q Consensus       114 ~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~-  191 (239)
                      .+.... ...+.    -+++..|... ...       .=..+.-.+++++..++.+++||.++. .|..   ...+.+. 
T Consensus       203 ~l~~~~~~~~d~----vliDtaG~~~-~~~-------~l~~eL~~i~ral~~de~llvLDa~t~-~~~~---~~~~~~~~  266 (328)
T 3e70_C          203 AIQHAKARGIDV----VLIDTAGRSE-TNR-------NLMDEMKKIARVTKPNLVIFVGDALAG-NAIV---EQARQFNE  266 (328)
T ss_dssp             HHHHHHHHTCSE----EEEEECCSCC-TTT-------CHHHHHHHHHHHHCCSEEEEEEEGGGT-THHH---HHHHHHHH
T ss_pred             HHHHHHhccchh----hHHhhccchh-HHH-------HHHHHHHHHHHHhcCCCCEEEEecHHH-HHHH---HHHHHHHH
Confidence            111000 00000    0011122211 011       122333458999999999999996665 3332   2333444 


Q ss_pred             hcCCEEEEEecCHH---------HHhhhcCeEEEEeCCeEEe--eCCChhHHHHHh
Q 026376          192 LFQGGILMVSHDEH---------LISGSVEELWVVSEGKATP--FHGTFHDYKKML  236 (239)
Q Consensus       192 ~~~~tii~vsHd~~---------~~~~~~d~i~~l~~G~i~~--~~g~~~~~~~~~  236 (239)
                      ..+.|+|++||.-.         .+....-.|..+..|+-+.  ..-+++.+.+++
T Consensus       267 ~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v~dl~~~~~~~~~~~l  322 (328)
T 3e70_C          267 AVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFLERI  322 (328)
T ss_dssp             HSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSSTTCEEECCHHHHHHHH
T ss_pred             hcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCccccccCCHHHHHHHH
Confidence            45779999999542         3334456788888887421  235677776654

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.40  E-value=8.4e-15  Score=126.64  Aligned_cols=110  Identities=10%  Similarity=0.074  Sum_probs=75.2

Q ss_pred             EEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEe---cCc----------e-EEEEEeeccCCC-C----CCC-C
Q 026376           50 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR---SAK----------V-RIAVFSQHHVDG-L----DLS-S  109 (239)
Q Consensus        50 l~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~---~~~----------~-~~~~~~q~~~~~-~----~~~-~  109 (239)
                      +++.+|++++|+||||||||||+|+|+ +.+|++|+|..   .++          . .++|++|.+... +    .++ .
T Consensus       160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~e  238 (302)
T 2yv5_A          160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKPR  238 (302)
T ss_dssp             HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCGG
T ss_pred             HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCHH
Confidence            345679999999999999999999999 99999999987   442          1 368999986321 1    111 1


Q ss_pred             cHHHHHH-------Hh----CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 026376          110 NPLLYMM-------RC----FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK  160 (239)
Q Consensus       110 ~~~~~~~-------~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lar  160 (239)
                      +....+.       ..    .......++.++++.+++.....++++..|||.+++++.|||
T Consensus       239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~  300 (302)
T 2yv5_A          239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR  300 (302)
T ss_dssp             GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred             HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            1100110       11    112234578999999999754566788999998888899986

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.40  E-value=1.4e-15  Score=135.73  Aligned_cols=155  Identities=15%  Similarity=0.176  Sum_probs=100.2

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhc------------CcCCCceeEEecCc------------eE---EEEEeeccCC
Q 026376           51 GIDLDSRIAMVGPNGIGKSTILKLIAG------------ELQPSSGTVFRSAK------------VR---IAVFSQHHVD  103 (239)
Q Consensus        51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~G------------l~~p~~G~i~~~~~------------~~---~~~~~q~~~~  103 (239)
                      ++.+|..++|+|+||||||||+|+|+|            ...|+.|.+.+.+.            ..   ..++.+.+-.
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl   95 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL   95 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence            557899999999999999999999999            56799999987652            11   2234443311


Q ss_pred             CCCCC--CcH-HHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC--CEEEEeCCCCCC
Q 026376          104 GLDLS--SNP-LLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP--HIILLDEPSNHL  178 (239)
Q Consensus       104 ~~~~~--~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p--~llllDEPt~~L  178 (239)
                      ....+  ... ..++... ...     ..++..+...   .+..+..+||+.            +|  +++++|||++++
T Consensus        96 ~~~~s~~e~L~~~fl~~i-r~~-----d~il~Vvd~~---~d~~i~~v~~~~------------dP~~di~ildeel~~~  154 (392)
T 1ni3_A           96 TKGASTGVGLGNAFLSHV-RAV-----DAIYQVVRAF---DDAEIIHVEGDV------------DPIRDLSIIVDELLIK  154 (392)
T ss_dssp             CCCCCSSSSSCHHHHHHH-TTC-----SEEEEEEECC---CTTCSSCCSSSS------------CHHHHHHHHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHH-HHH-----HHHHHHHhcc---ccceeeeecccc------------CcchhhhhchhhhHHH
Confidence            11111  000 0111110 000     0112222221   134455567653            89  999999999999


Q ss_pred             CHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEE-EEeCC-eEEeeCCCh
Q 026376          179 DLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELW-VVSEG-KATPFHGTF  229 (239)
Q Consensus       179 D~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~-~l~~G-~i~~~~g~~  229 (239)
                      |+......++.+...    +.||+  +|+...+..+|+++. +|++| +++ +.++.
T Consensus       155 D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~-~~~~~  208 (392)
T 1ni3_A          155 DAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPI-RKGDW  208 (392)
T ss_dssp             HHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCG-GGSCC
T ss_pred             HHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCcee-ecCCC
Confidence            999988777766554    33543  999999999999999 89999 775 44554

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=99.39  E-value=6.5e-13  Score=114.42  Aligned_cols=130  Identities=17%  Similarity=0.071  Sum_probs=89.4

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCC
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLS  108 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~  108 (239)
                      +.++++++.|++ ..  ++++|+  +|++++++|+||+||||+++.|++.+.+..|+|.+.+        .+      ..
T Consensus        77 ~~~~~l~~~~~~-~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~--------~d------~~  137 (295)
T 1ls1_A           77 TVYEALKEALGG-EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA--------AD------TQ  137 (295)
T ss_dssp             HHHHHHHHHTTS-SC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE--------CC------SS
T ss_pred             HHHHHHHHHHCC-CC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec--------CC------cc
Confidence            456788888843 22  788888  8999999999999999999999999998888876422        11      11


Q ss_pred             CcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC-CCCCCHHHHHHHH
Q 026376          109 SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP-SNHLDLDAVEALI  187 (239)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEP-t~~LD~~~~~~l~  187 (239)
                      ......           ....+.+..++.. ....  ...+-.+.+|.+|+++...+++++|+||| +.++|......+.
T Consensus       138 ~~~~~~-----------ql~~~~~~~~l~~-~~~~--~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~  203 (295)
T 1ls1_A          138 RPAARE-----------QLRLLGEKVGVPV-LEVM--DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELA  203 (295)
T ss_dssp             CHHHHH-----------HHHHHHHHHTCCE-EECC--TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHH
T ss_pred             cHhHHH-----------HHHHhcccCCeEE-EEcC--CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHH
Confidence            111100           1112334455532 1100  12344566789999998899999999999 9999988777766


Q ss_pred             HHHh
Q 026376          188 QGLV  191 (239)
Q Consensus       188 ~~l~  191 (239)
                      ....
T Consensus       204 ~~~~  207 (295)
T 1ls1_A          204 RLKE  207 (295)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            5544

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=99.39  E-value=1.2e-12  Score=112.74  Aligned_cols=136  Identities=13%  Similarity=0.129  Sum_probs=86.5

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHH
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG  132 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  132 (239)
                      .+|++++|+|+|||||||+++.|++.+.+++|.       ++.++.++..     ....            .+.+..+.+
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-------~V~lv~~D~~-----r~~a------------~eqL~~~~~  158 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-------KIAFITTDTY-----RIAA------------VEQLKTYAE  158 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-------CEEEEECCCS-----STTH------------HHHHHHHHT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-------EEEEEecCcc-----cchH------------HHHHHHHHH
Confidence            479999999999999999999999999887782       3456665542     1111            112223334


Q ss_pred             hcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHH---HHhhc-C-CEEEEE--ecCHH
Q 026376          133 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ---GLVLF-Q-GGILMV--SHDEH  205 (239)
Q Consensus       133 ~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~---~l~~~-~-~tii~v--sHd~~  205 (239)
                      .+++....      ..+ +...+.++++  +.+|+++|+|  |+|+|+.....+.+   .+... . .+++++  +|+..
T Consensus       159 ~~gl~~~~------~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~  227 (296)
T 2px0_A          159 LLQAPLEV------CYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE  227 (296)
T ss_dssp             TTTCCCCB------CSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH
T ss_pred             hcCCCeEe------cCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH
Confidence            44543211      112 3445666665  3899999999  99999865443332   22211 1 234444  99988


Q ss_pred             HHhhhcCeEEEEeCCeEE
Q 026376          206 LISGSVEELWVVSEGKAT  223 (239)
Q Consensus       206 ~~~~~~d~i~~l~~G~i~  223 (239)
                      .+.++++++..+..+.++
T Consensus       228 ~~~~~~~~~~~l~~~giV  245 (296)
T 2px0_A          228 DMKHIVKRFSSVPVNQYI  245 (296)
T ss_dssp             HHHHHTTTTSSSCCCEEE
T ss_pred             HHHHHHHHHhcCCCCEEE
Confidence            888888877656666654

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=99.37  E-value=9.5e-16  Score=124.58  Aligned_cols=143  Identities=19%  Similarity=0.240  Sum_probs=77.2

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcCcC-------------CCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHH--
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGELQ-------------PSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR--  117 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~-------------p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~--  117 (239)
                      ++|++++|+||||||||||+++|+|+++             |..|++  ++.   .|.++..        ..+.....  
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~--~g~---~~~~~~~--------~~~~~~i~~~   68 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEE--DGK---DYYFVTR--------EMMQRDIAAG   68 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCC--BTT---TBEECCH--------HHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCccc--CCc---eEEEccH--------HHHHHHHHcC
Confidence            5799999999999999999999999886             444442  111   1111110        00111000  


Q ss_pred             ----------hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHH---HHHH-HhccCCCEEEEeCCCCCCCHHHH
Q 026376          118 ----------CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV---AFAK-ITFKKPHIILLDEPSNHLDLDAV  183 (239)
Q Consensus       118 ----------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv---~lar-al~~~p~llllDEPt~~LD~~~~  183 (239)
                                ...+.+.+.++++++.-...  ..+.   .+ .|-++..   ..|+ +++.+|++++|||||+++|.++.
T Consensus        69 ~~l~~~~~~~n~~g~~~~~i~~~~~~~~~~--~~~~---~~-~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~~~e  142 (198)
T 1lvg_A           69 DFIEHAEFSGNLYGTSKEAVRAVQAMNRIC--VLDV---DL-QGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETE  142 (198)
T ss_dssp             CEEEEEEETTEEEEEEHHHHHHHHHTTCEE--EEEC---CH-HHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCH
T ss_pred             CCEeeeeecCccCCCCHHHHHHHHHcCCcE--EEEC---CH-HHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCCCCH
Confidence                      00112345566666532110  0000   00 1111111   1456 78888999999999999998877


Q ss_pred             HHHHHHHhhcCCEEEEEecCHHHHhhhcCeEEEEeC
Q 026376          184 EALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSE  219 (239)
Q Consensus       184 ~~l~~~l~~~~~tii~vsHd~~~~~~~~d~i~~l~~  219 (239)
                      +.+.+.+.+.... +.++|.  .  ..+|+++++++
T Consensus       143 ~~i~~~l~~~~~~-~~~a~~--~--~~~D~iivnd~  173 (198)
T 1lvg_A          143 ESLAKRLAAARTD-MESSKE--P--GLFDLVIINDD  173 (198)
T ss_dssp             HHHHHHHHHHHHH-TTGGGS--T--TTCSEEEECSS
T ss_pred             HHHHHHHHHHHHH-HHHhhc--c--CCceEEEECCC
Confidence            7777766543211 234451  1  46888877653

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=99.36  E-value=1.1e-12  Score=113.49  Aligned_cols=99  Identities=20%  Similarity=0.240  Sum_probs=74.1

Q ss_pred             eeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHH
Q 026376           47 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQK  126 (239)
Q Consensus        47 ~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (239)
                      .++++..+|++++|+|+|||||||+++.|++.+.+..|+|.+.        ..+.      ....           ..+.
T Consensus        96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv--------~~D~------~r~~-----------a~eq  150 (306)
T 1vma_A           96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA--------AADT------FRAA-----------AIEQ  150 (306)
T ss_dssp             CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE--------EECT------TCHH-----------HHHH
T ss_pred             CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE--------cccc------ccHH-----------HHHH
Confidence            4566778899999999999999999999999999888877532        2221      0100           0123


Q ss_pred             HHHHHHhcCCCcccccCCCCCCChHHHHHH---HHHHHhccCCCEEEEeCCCC
Q 026376          127 LRAHLGSFGVTGNLALQPMYTLSGGQKSRV---AFAKITFKKPHIILLDEPSN  176 (239)
Q Consensus       127 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv---~laral~~~p~llllDEPt~  176 (239)
                      +..+++.+++..      +..+|+|+.+++   ++++++..+|+++|+|||..
T Consensus       151 L~~~~~~~gl~~------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~  197 (306)
T 1vma_A          151 LKIWGERVGATV------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR  197 (306)
T ss_dssp             HHHHHHHHTCEE------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred             HHHHHHHcCCcE------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence            445566667641      236789999999   99999999999999999975

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.35  E-value=1.1e-16  Score=140.06  Aligned_cols=162  Identities=19%  Similarity=0.257  Sum_probs=98.6

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCC-------CEEEEECCCCCcHHHHHHHHhcCc----CCCceeEEecC------
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLD-------SRIAMVGPNGIGKSTILKLIAGEL----QPSSGTVFRSA------   90 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~G-------e~~~iiG~NGsGKSTLl~~l~Gl~----~p~~G~i~~~~------   90 (239)
                      +++.++++..|+ ...+++++++.+.+|       +.++|+||||+|||||+++|+|.+    .+++|.+...+      
T Consensus        18 ~lr~~~l~~~~g-~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~   96 (334)
T 1in4_A           18 FLRPKSLDEFIG-QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAI   96 (334)
T ss_dssp             TTSCSSGGGCCS-CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHH
T ss_pred             HcCCccHHHccC-cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHH
Confidence            355677877774 456889999999877       899999999999999999999988    67777764321      


Q ss_pred             -----ceEEEEEeeccCCCCCCCCcHHHHH---HHhCC-------CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHH
Q 026376           91 -----KVRIAVFSQHHVDGLDLSSNPLLYM---MRCFP-------GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR  155 (239)
Q Consensus        91 -----~~~~~~~~q~~~~~~~~~~~~~~~~---~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr  155 (239)
                           ...+.+++|....  ..  +....+   +....       ......+...+..+++..  ...++..||+|++||
T Consensus        97 ~~~~~~~~v~~iDE~~~l--~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~--at~~~~~Ls~~l~sR  170 (334)
T 1in4_A           97 LTSLERGDVLFIDEIHRL--NK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG--ATTRSGLLSSPLRSR  170 (334)
T ss_dssp             HHHCCTTCEEEEETGGGC--CH--HHHHHHHHHHHTSCCCC---------------CCCEEEE--EESCGGGSCHHHHTT
T ss_pred             HHHccCCCEEEEcchhhc--CH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE--ecCCcccCCHHHHHh
Confidence                 2357888876432  11  122211   11111       111233444555566542  445678999999999


Q ss_pred             HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhhhcCe
Q 026376          156 VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEE  213 (239)
Q Consensus       156 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~~~d~  213 (239)
                      +.++                .+||+.+...+.+.+++... ..-++|+.+.+..+|++
T Consensus       171 ~~l~----------------~~Ld~~~~~~l~~iL~~~~~-~~~~~~~~~~~~~ia~~  211 (334)
T 1in4_A          171 FGII----------------LELDFYTVKELKEIIKRAAS-LMDVEIEDAAAEMIAKR  211 (334)
T ss_dssp             CSEE----------------EECCCCCHHHHHHHHHHHHH-HTTCCBCHHHHHHHHHT
T ss_pred             cCce----------------eeCCCCCHHHHHHHHHHHHH-HcCCCcCHHHHHHHHHh
Confidence            8654                66776665555555543210 01136888777766654

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=99.35  E-value=4e-13  Score=122.65  Aligned_cols=71  Identities=15%  Similarity=0.220  Sum_probs=56.4

Q ss_pred             CCCCChHHHHHHHHH--HHhcc---------------CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHH
Q 026376          145 MYTLSGGQKSRVAFA--KITFK---------------KPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLI  207 (239)
Q Consensus       145 ~~~LSgGqkqrv~la--ral~~---------------~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~  207 (239)
                      .+.+||||+|-..+|  .++++               .-.+++|||. +-+|.+.....++.+++++--+|++|=+  .+
T Consensus       377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~lglQliiatP~--~i  453 (483)
T 3euj_A          377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERLDMQLLIAAPE--NI  453 (483)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHTTCEEEEEESS--SC
T ss_pred             cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHcCCEEEEECcc--hh
Confidence            467999999974443  33332               2357999999 9999999999999999999888899887  66


Q ss_pred             hhhcCeEEEEe
Q 026376          208 SGSVEELWVVS  218 (239)
Q Consensus       208 ~~~~d~i~~l~  218 (239)
                      ..++|.++.+-
T Consensus       454 ~p~v~~~~~~~  464 (483)
T 3euj_A          454 SPERGTTYKLV  464 (483)
T ss_dssp             CCSSSEEEECC
T ss_pred             hhccCceEEEE
Confidence            66788888763

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=99.29  E-value=5.3e-11  Score=98.35  Aligned_cols=56  Identities=11%  Similarity=0.029  Sum_probs=40.6

Q ss_pred             cCCCEEEEeCCCCCC--CHHHHH----HHHHHHhhcCCEEEEEecCHHH--------HhhhcCeEEEEeC
Q 026376          164 KKPHIILLDEPSNHL--DLDAVE----ALIQGLVLFQGGILMVSHDEHL--------ISGSVEELWVVSE  219 (239)
Q Consensus       164 ~~p~llllDEPt~~L--D~~~~~----~l~~~l~~~~~tii~vsHd~~~--------~~~~~d~i~~l~~  219 (239)
                      .+|+++++|+|++.+  |+....    .+.+.+++.+.|||+++|....        +.++||.++.|+.
T Consensus       127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~  196 (247)
T 2dr3_A          127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL  196 (247)
T ss_dssp             HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred             hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence            579999999999988  543322    3344445667899999998765        4578999999864

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.26  E-value=1.2e-15  Score=130.11  Aligned_cols=137  Identities=17%  Similarity=0.164  Sum_probs=82.4

Q ss_pred             CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce-----------EEEEEeeccCCCCCCCCc
Q 026376           42 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------RIAVFSQHHVDGLDLSSN  110 (239)
Q Consensus        42 ~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------~~~~~~q~~~~~~~~~~~  110 (239)
                      ..+++++++++.+|  ++|+||||||||||+++|+|...+  |.|.+++..           .+++++|..... .....
T Consensus        33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~-~p~i~  107 (274)
T 2x8a_A           33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNS-APCVI  107 (274)
T ss_dssp             HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHT-CSEEE
T ss_pred             HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhc-CCCeE
Confidence            35789999999999  999999999999999999999876  566654421           112222211000 00000


Q ss_pred             HHHHHHHhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC------------CC
Q 026376          111 PLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN------------HL  178 (239)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~------------~L  178 (239)
                      .++.+....   .. +-..   ..+......++.+.+|||||+||+.|++|+..+|++|  |||+.            --
T Consensus       108 ~~Deid~~~---~~-r~~~---~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P  178 (274)
T 2x8a_A          108 FFDEVDALC---PR-RSDR---ETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLP  178 (274)
T ss_dssp             EEETCTTTC---C-------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSC
T ss_pred             eeehhhhhh---cc-cCCC---cchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCc
Confidence            000000000   00 0000   0000112234456789999999999999999999985  99864            33


Q ss_pred             CHHHHHHHHHHHhh
Q 026376          179 DLDAVEALIQGLVL  192 (239)
Q Consensus       179 D~~~~~~l~~~l~~  192 (239)
                      |...+..+++.+.+
T Consensus       179 ~~~~r~~il~~~~~  192 (274)
T 2x8a_A          179 PPADRLAILKTITK  192 (274)
T ss_dssp             CHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHh
Confidence            67788888877653

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=99.23  E-value=1.4e-11  Score=111.89  Aligned_cols=165  Identities=14%  Similarity=0.145  Sum_probs=101.9

Q ss_pred             ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHH-----
Q 026376           43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMR-----  117 (239)
Q Consensus        43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~-----  117 (239)
                      ..|+++..-+.+|+++.|.|++|+|||||+..|++...+..|.       .+.|+.-+.    .. ......+..     
T Consensus       191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~-------~Vl~~s~E~----s~-~~l~~r~~~~~~~~  258 (454)
T 2r6a_A          191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNE-------NVAIFSLEM----SA-QQLVMRMLCAEGNI  258 (454)
T ss_dssp             HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSC-------CEEEEESSS----CH-HHHHHHHHHHHHTC
T ss_pred             HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCC-------cEEEEECCC----CH-HHHHHHHHHHHcCC
Confidence            4678888789999999999999999999999999877654441       123332211    00 001111100     


Q ss_pred             -----hCCCCcH---HHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc--cCCCEEEEeCCCCCCCH-------
Q 026376          118 -----CFPGVPE---QKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF--KKPHIILLDEPSNHLDL-------  180 (239)
Q Consensus       118 -----~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~--~~p~llllDEPt~~LD~-------  180 (239)
                           .......   .++.++++.++...... .....+|.+|.+  +.++.++  .+|+++++|+++...+.       
T Consensus       259 ~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i-~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~  335 (454)
T 2r6a_A          259 NAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYI-DDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENR  335 (454)
T ss_dssp             CHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEE-ECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----C
T ss_pred             CHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEE-ECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCH
Confidence                 0011122   23344444443322222 234689999987  4556555  68999999999998743       


Q ss_pred             -HHHHHHHHHHh----hcCCEEEEEec---------C--HH--------HHhhhcCeEEEEeCCeE
Q 026376          181 -DAVEALIQGLV----LFQGGILMVSH---------D--EH--------LISGSVEELWVVSEGKA  222 (239)
Q Consensus       181 -~~~~~l~~~l~----~~~~tii~vsH---------d--~~--------~~~~~~d~i~~l~~G~i  222 (239)
                       .....+.+.|+    +.+.+||+++|         |  +.        .+.+.||.|++|..++.
T Consensus       336 ~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~  401 (454)
T 2r6a_A          336 QQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY  401 (454)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred             HHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence             22344444443    45779999999         3  22        46778999999986653

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.22  E-value=4.6e-13  Score=115.61  Aligned_cols=100  Identities=14%  Similarity=0.080  Sum_probs=61.0

Q ss_pred             EEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEe---cCc-----------eEEEEEeeccCCC-CCC-------
Q 026376           50 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR---SAK-----------VRIAVFSQHHVDG-LDL-------  107 (239)
Q Consensus        50 l~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~---~~~-----------~~~~~~~q~~~~~-~~~-------  107 (239)
                      |++..|++++|+||||||||||+|+|+|+.+|++|+|..   .++           ..+++++|.+... +.+       
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~  243 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE  243 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred             HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence            456789999999999999999999999999999999987   332           1368899986311 100       


Q ss_pred             ------CCcHHHHHH--Hh-CCCCcHHHHHHHHHhcCCCcccccCCCCCCCh
Q 026376          108 ------SSNPLLYMM--RC-FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSG  150 (239)
Q Consensus       108 ------~~~~~~~~~--~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg  150 (239)
                            ..+. .++.  .. .......++.++|+.++|.....++++..||+
T Consensus       244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse  294 (301)
T 1u0l_A          244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYE  294 (301)
T ss_dssp             HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence                  0011 1110  00 11223457889999999964455666777775

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.20  E-value=2e-13  Score=118.15  Aligned_cols=59  Identities=27%  Similarity=0.318  Sum_probs=54.2

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEE-------------------eCCCEEEEECCCCCcHHHHHHHHhcCcC--CCcee
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGI-------------------DLDSRIAMVGPNGIGKSTILKLIAGELQ--PSSGT   85 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i-------------------~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~--p~~G~   85 (239)
                      .+|+++||++.|.   +++++++|.+                   .+|+++||+||||||||||+++|+|++.  |++|+
T Consensus        36 ~~i~~~~v~~~y~---~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~  112 (308)
T 1sq5_A           36 EDLSLEEVAEIYL---PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR  112 (308)
T ss_dssp             TTCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred             cccchHhHHHHHH---HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCe
Confidence            4689999999992   5889999988                   8999999999999999999999999998  99999


Q ss_pred             EEe
Q 026376           86 VFR   88 (239)
Q Consensus        86 i~~   88 (239)
                      |.+
T Consensus       113 i~v  115 (308)
T 1sq5_A          113 VEL  115 (308)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            876

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=99.14  E-value=1.1e-11  Score=102.37  Aligned_cols=175  Identities=13%  Similarity=0.111  Sum_probs=75.0

Q ss_pred             ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHh-cCcC------------CCceeEEecCceEEEEEeeccCCCCCCCC
Q 026376           43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA-GELQ------------PSSGTVFRSAKVRIAVFSQHHVDGLDLSS  109 (239)
Q Consensus        43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~-Gl~~------------p~~G~i~~~~~~~~~~~~q~~~~~~~~~~  109 (239)
                      +..+++||++++|++++|+||||||||||+++|+ |+++            |..|++  .   ...|.++...       
T Consensus        15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~---g~~~~~~~~~-------   82 (231)
T 3lnc_A           15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--E---GKDYYFVDRE-------   82 (231)
T ss_dssp             -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--B---TTTBEECCHH-------
T ss_pred             cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--C---CCeEEEecHH-------
Confidence            3568999999999999999999999999999999 9984            444332  0   1123332210       


Q ss_pred             cHHHHHHHh---------C---CCCcHHHHHHHHHhcCCCcccccCCCCCCCh--HHHHHH-HH-HHHhccCCCEEEEeC
Q 026376          110 NPLLYMMRC---------F---PGVPEQKLRAHLGSFGVTGNLALQPMYTLSG--GQKSRV-AF-AKITFKKPHIILLDE  173 (239)
Q Consensus       110 ~~~~~~~~~---------~---~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg--Gqkqrv-~l-aral~~~p~llllDE  173 (239)
                       .+..+...         .   .......+.++++.-..  ...+-   .+.|  .-++++ .- ..+++..|+..+++|
T Consensus        83 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--vild~---~~~g~~~~~~~~~~~~~~v~v~~~~~~~l~~  156 (231)
T 3lnc_A           83 -EFLRLCSNGEIIEHAEVFGNFYGVPRKNLEDNVDKGVS--TLLVI---DWQGAFKFMEMMREHVVSIFIMPPSMEELRR  156 (231)
T ss_dssp             -HHHHHHHTTCEEEEEEETTEEEEEECTTHHHHHHHTCE--EEEEC---CHHHHHHHHHHSGGGEEEEEEECSCHHHHHH
T ss_pred             -HhhhhhhcCceehhhhhccccCCCCHHHHHHHHHcCCe--EEEEc---CHHHHHHHHHhcCCCeEEEEEECCcHHHHHH
Confidence             11111100         0   00112234444443111  11111   0111  112332 11 123456778888899


Q ss_pred             CCCCCCHHHHHHHHHHHh----hc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHHh
Q 026376          174 PSNHLDLDAVEALIQGLV----LF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKML  236 (239)
Q Consensus       174 Pt~~LD~~~~~~l~~~l~----~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~  236 (239)
                      ++.+.|..+...+.+.+.    ..    ...+++++|+++.+.+-+.+++....++.. ...+.+++.+.+
T Consensus       157 Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~~~-~~~~~~~~~~~~  226 (231)
T 3lnc_A          157 RLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMKTC-RQVGLRELLESR  226 (231)
T ss_dssp             C--------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTBGG-GEESHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhccc-cCcchhhHhhcc
Confidence            999998766555543332    11    236888899988877666666655455543 345566665543

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=99.11  E-value=1.8e-12  Score=112.20  Aligned_cols=103  Identities=14%  Similarity=0.121  Sum_probs=58.3

Q ss_pred             EEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEe---cCc--------eE--EEEEeeccCCC-CCC-CCcHHHH
Q 026376           50 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR---SAK--------VR--IAVFSQHHVDG-LDL-SSNPLLY  114 (239)
Q Consensus        50 l~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~---~~~--------~~--~~~~~q~~~~~-~~~-~~~~~~~  114 (239)
                      +++.+|++++|+||||||||||+|+|+|+.+|+.|+|..   .++        ..  .+|++|.+... +.+ ..+. ..
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~  246 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE  246 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence            678899999999999999999999999999999999976   321        11  58999986321 111 1222 22


Q ss_pred             H-------HHh----------CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHH
Q 026376          115 M-------MRC----------FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKS  154 (239)
Q Consensus       115 ~-------~~~----------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq  154 (239)
                      +       ...          ........+.++++.+++..... .....|+.|++|
T Consensus       247 l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~-~~y~~lls~~~~  302 (307)
T 1t9h_A          247 LGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRY-DHYVEFMTEIKD  302 (307)
T ss_dssp             HGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHH-HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHH-HHHHHHHHHHhh
Confidence            2       000          11123457889999999974332 334567777776

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.10  E-value=6.7e-11  Score=94.71  Aligned_cols=37  Identities=22%  Similarity=0.239  Sum_probs=32.6

Q ss_pred             HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 026376          154 SRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL  192 (239)
Q Consensus       154 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  192 (239)
                      +.+.+|++++.+|+++++|  ||++|..++..+++.+.+
T Consensus       152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~  188 (191)
T 1oix_A          152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT  188 (191)
T ss_dssp             SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence            3468899999999999999  999999999998887754

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=99.06  E-value=9.7e-10  Score=96.66  Aligned_cols=139  Identities=17%  Similarity=0.218  Sum_probs=81.6

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHH
Q 026376           51 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH  130 (239)
Q Consensus        51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (239)
                      -+.+|+++.|.||||||||||+..++.......|.+        .|+.-+.    ..  ...  .               
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~v--------lyi~~E~----~~--~~~--~---------------  105 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIA--------AFIDAEH----AL--DPE--Y---------------  105 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCE--------EEEESSC----CC--CHH--H---------------
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeE--------EEEECCC----Cc--CHH--H---------------
Confidence            577999999999999999999888876544333333        3333221    11  111  0               


Q ss_pred             HHhcCCCcccccCCCCCCChHHHHHHHHHHHhccC--CCEEEEeCCCCCC----------CH----HH--HHHHHHH---
Q 026376          131 LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKK--PHIILLDEPSNHL----------DL----DA--VEALIQG---  189 (239)
Q Consensus       131 l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~--p~llllDEPt~~L----------D~----~~--~~~l~~~---  189 (239)
                      .+.+|+..... ......+.  .+-+.++++++.+  |+++++|||++.+          |.    ..  ....+..   
T Consensus       106 a~~lG~~~~~l-~i~~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~  182 (349)
T 2zr9_A          106 AKKLGVDTDSL-LVSQPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTG  182 (349)
T ss_dssp             HHHTTCCGGGC-EEECCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCHHHe-EEecCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHH
Confidence            12223221000 00011233  3345677877654  9999999999998          32    11  1122222   


Q ss_pred             -HhhcCCEEEEEecCHH----------------HHhhhcCeEEEEeCCeEE
Q 026376          190 -LVLFQGGILMVSHDEH----------------LISGSVEELWVVSEGKAT  223 (239)
Q Consensus       190 -l~~~~~tii~vsHd~~----------------~~~~~~d~i~~l~~G~i~  223 (239)
                       +++.+.+||+++|-..                .+..+||.++.++.+++.
T Consensus       183 ~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~  233 (349)
T 2zr9_A          183 ALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETL  233 (349)
T ss_dssp             HHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEE
T ss_pred             HHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeee
Confidence             3556789999999643                256789998888876543

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=99.05  E-value=1.3e-11  Score=103.90  Aligned_cols=54  Identities=19%  Similarity=0.257  Sum_probs=36.4

Q ss_pred             CeEEEEee-EEEcCCCCceeeeeeEEEeC---CCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376           27 PIISFSDA-SFGYPGGPILFKNLNFGIDL---DSRIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        27 ~~l~~~~l-~~~y~~~~~~l~~isl~i~~---Ge~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      ++++++|+ ++.|+++..+|+++||+|.+   |++++|+|++||||||+.++|++.+.
T Consensus        16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg   73 (250)
T 3nwj_A           16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG   73 (250)
T ss_dssp             ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            47999999 99994456799999999999   99999999999999999999998553

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=99.05  E-value=2e-12  Score=118.85  Aligned_cols=165  Identities=14%  Similarity=0.078  Sum_probs=94.3

Q ss_pred             eeeEEEeCCCEEEEECCCCCcHHHHHHHHhc--CcCCCceeEEe---cCceEEEEEeeccC--CCC--CCCCcHHH--HH
Q 026376           47 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAG--ELQPSSGTVFR---SAKVRIAVFSQHHV--DGL--DLSSNPLL--YM  115 (239)
Q Consensus        47 ~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~G--l~~p~~G~i~~---~~~~~~~~~~q~~~--~~~--~~~~~~~~--~~  115 (239)
                      .+++++.++..+.|.|++||||||++++|..  +..++.|++.+   +.+. .  -++...  ..+  .+..+...  ..
T Consensus       159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~-~--el~~~~~lPhl~~~Vvtd~~~a~~~  235 (512)
T 2ius_A          159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM-L--ELSVYEGIPHLLTEVVTDMKDAANA  235 (512)
T ss_dssp             EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS-S--GGGGGTTCTTBSSSCBCSHHHHHHH
T ss_pred             EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch-h--hhhhhccCCcccceeecCHHHHHHH
Confidence            4778899999999999999999999999876  45555565542   1110 0  011100  000  11111111  11


Q ss_pred             HHhCCCCcHHHHHHHHHhcCCCccccc---CCCCCCChHHHHHH----------HHHHHhccCCC-EEEEeCCCCCCCHH
Q 026376          116 MRCFPGVPEQKLRAHLGSFGVTGNLAL---QPMYTLSGGQKSRV----------AFAKITFKKPH-IILLDEPSNHLDLD  181 (239)
Q Consensus       116 ~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~~LSgGqkqrv----------~laral~~~p~-llllDEPt~~LD~~  181 (239)
                      ...... ..++-.+++...|+.+ +..   +....+|+||+|+.          ++|+++...|. ++++||+++.++..
T Consensus       236 L~~~~~-EmerR~~ll~~~Gv~~-i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~  313 (512)
T 2ius_A          236 LRWCVN-EMERRYKLMSALGVRN-LAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV  313 (512)
T ss_dssp             HHHHHH-HHHHHHHHHHHTTCSS-HHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHHHcCCcc-HHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh
Confidence            110000 1112235677777653 211   11235788887752          35667788898 89999999988843


Q ss_pred             H--HHHHHHHHhh----cCCEEEEEecCHH-------HHhhhcCeEEE
Q 026376          182 A--VEALIQGLVL----FQGGILMVSHDEH-------LISGSVEELWV  216 (239)
Q Consensus       182 ~--~~~l~~~l~~----~~~tii~vsHd~~-------~~~~~~d~i~~  216 (239)
                      .  ...++..|.+    .|.++|++||++.       ...++.+||.+
T Consensus       314 ~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l  361 (512)
T 2ius_A          314 GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF  361 (512)
T ss_dssp             HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred             hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence            2  2334444433    3558999999987       45566677654

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=99.03  E-value=4.9e-11  Score=112.07  Aligned_cols=153  Identities=14%  Similarity=0.103  Sum_probs=96.0

Q ss_pred             EeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCc-eeEEecC------ceEEEEEeeccCCC
Q 026376           32 SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSS-GTVFRSA------KVRIAVFSQHHVDG  104 (239)
Q Consensus        32 ~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~-G~i~~~~------~~~~~~~~q~~~~~  104 (239)
                      ++++.-| +...+++++++.+.+|+.++|+||||+|||||+++|++++++.. |.+.+.+      ...++++++.....
T Consensus        38 ~~l~~i~-G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~  116 (604)
T 3k1j_A           38 KLIDQVI-GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRR  116 (604)
T ss_dssp             SHHHHCC-SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHH
T ss_pred             cccceEE-CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHH
Confidence            3444445 44568899999999999999999999999999999999999887 6665432      12456655432000


Q ss_pred             CCCCCcHHHHHHH-----------------------hCC--C-----CcHHHHHHHHHhcCCCcccccCCCCCCChHHHH
Q 026376          105 LDLSSNPLLYMMR-----------------------CFP--G-----VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKS  154 (239)
Q Consensus       105 ~~~~~~~~~~~~~-----------------------~~~--~-----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq  154 (239)
                      +  ..........                       ...  .     .......+++..+..    .....+.+|+|++|
T Consensus       117 ~--~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~----~~~~~g~~~~g~~~  190 (604)
T 3k1j_A          117 I--VEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRH----DPFQSGGLGTPAHE  190 (604)
T ss_dssp             H--HHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECC----CCC----CCCCGGG
T ss_pred             H--HHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEe----chhhcCCccccccc
Confidence            0  0000000000                       000  0     000111222222111    11223679999999


Q ss_pred             HHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 026376          155 RVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL  192 (239)
Q Consensus       155 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  192 (239)
                      ++..++....++.+|++||... |++.....+.+.|.+
T Consensus       191 ~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~  227 (604)
T 3k1j_A          191 RVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE  227 (604)
T ss_dssp             GEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred             cccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence            9999999999999999999988 899998888888863

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=99.03  E-value=3.2e-12  Score=106.05  Aligned_cols=54  Identities=20%  Similarity=0.246  Sum_probs=42.4

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecC
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA   90 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~   90 (239)
                      .|+++|+...|+ .       +|++.+ ++++|+|||||||||||++|+|++.|++|.|.+++
T Consensus         9 ~l~l~~~~~~~~-~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g   62 (227)
T 1qhl_A            9 SLTLINWNGFFA-R-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRN   62 (227)
T ss_dssp             EEEEEEETTEEE-E-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC----
T ss_pred             EEEEEeeecccC-C-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECC
Confidence            578888866552 1       566666 89999999999999999999999999999987654

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=99.02  E-value=2.7e-10  Score=90.27  Aligned_cols=109  Identities=16%  Similarity=0.156  Sum_probs=67.7

Q ss_pred             ee--eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEE---------ec--------CceEEEEEeeccCCC
Q 026376           44 LF--KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF---------RS--------AKVRIAVFSQHHVDG  104 (239)
Q Consensus        44 ~l--~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~---------~~--------~~~~~~~~~q~~~~~  104 (239)
                      .+  +++++++.+| +++|+||||||||||+++|++++.+..|...         ..        ....+.+++|++...
T Consensus        14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~   92 (182)
T 3kta_A           14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRG   92 (182)
T ss_dssp             GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCC
T ss_pred             eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcc
Confidence            45  7889999998 9999999999999999999998887765421         11        224688888875433


Q ss_pred             CCCCCcHH---HHHH----H---h-CCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHH
Q 026376          105 LDLSSNPL---LYMM----R---C-FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVA  157 (239)
Q Consensus       105 ~~~~~~~~---~~~~----~---~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~  157 (239)
                      +.+....+   ..+.    .   . .......++.+++..+++..+.    ..-++.||.++++
T Consensus        93 ~~~~~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~~----~~~~~qg~~~~l~  152 (182)
T 3kta_A           93 FPIDEDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPDG----YNIVLQGDITKFI  152 (182)
T ss_dssp             SSSSSSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCTTC----TTEECTTCTTHHH
T ss_pred             cccCCcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCCCC----CEEEEcccHHHHH
Confidence            22210000   0000    0   0 0012356788889888886431    1345666665553

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.97  E-value=2.1e-10  Score=92.42  Aligned_cols=32  Identities=16%  Similarity=0.421  Sum_probs=26.8

Q ss_pred             eEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376           49 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        49 sl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      |+++.+|++++|+||||||||||+++|+|+++
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            57888999999999999999999999999974

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.97  E-value=1.3e-12  Score=116.10  Aligned_cols=127  Identities=14%  Similarity=0.146  Sum_probs=78.4

Q ss_pred             ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEe-cC---c--eEEEEEeeccC---CCCCCCCcHHH
Q 026376           43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR-SA---K--VRIAVFSQHHV---DGLDLSSNPLL  113 (239)
Q Consensus        43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~-~~---~--~~~~~~~q~~~---~~~~~~~~~~~  113 (239)
                      .+++++++.+++|++++|+||||||||||+++|+|..   +|.+.. ..   .  ..+++++|...   +........  
T Consensus       157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~~~~~~~~~~lg~~~q~~~~l~dd~~~~~~~--  231 (377)
T 1svm_A          157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGE--  231 (377)
T ss_dssp             HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTT--
T ss_pred             HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEeccchhHHHHHHHhcchhHHHHHHHHHHHHH--
Confidence            4789999999999999999999999999999999853   677654 21   0  12344444321   001000000  


Q ss_pred             HHHHhCCCCc----HHHHHHHHHh---------------cCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEE-EeC
Q 026376          114 YMMRCFPGVP----EQKLRAHLGS---------------FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIIL-LDE  173 (239)
Q Consensus       114 ~~~~~~~~~~----~~~~~~~l~~---------------~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~lll-lDE  173 (239)
                        .+......    ...+...++.               .-+.....+.....+++|+++|++.+.+++..|++++ ||+
T Consensus       232 --~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~  309 (377)
T 1svm_A          232 --SRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLER  309 (377)
T ss_dssp             --TTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHT
T ss_pred             --HhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeC
Confidence              00000000    0122333320               0111112334567899999999999888899999988 999


Q ss_pred             CCC
Q 026376          174 PSN  176 (239)
Q Consensus       174 Pt~  176 (239)
                      |+.
T Consensus       310 ~~~  312 (377)
T 1svm_A          310 SEF  312 (377)
T ss_dssp             CTH
T ss_pred             CHH
Confidence            997

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.93  E-value=1.9e-09  Score=94.90  Aligned_cols=122  Identities=17%  Similarity=0.166  Sum_probs=77.2

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEec-CceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHH
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS-AKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG  132 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~-~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  132 (239)
                      ..-.++|+|++|+|||||++.|+|.. +..|..... ....++.+.+...                           .+.
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~---------------------------~~~  217 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYF---------------------------RYQ  217 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTE---------------------------EEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCc---------------------------eEE
Confidence            44589999999999999999999975 221211000 0111222221100                           011


Q ss_pred             hcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe-CCCCCCCHHHHHHHHHHHhhc--CCEEEEEe--cCHH
Q 026376          133 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD-EPSNHLDLDAVEALIQGLVLF--QGGILMVS--HDEH  205 (239)
Q Consensus       133 ~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD-EPt~~LD~~~~~~l~~~l~~~--~~tii~vs--Hd~~  205 (239)
                      .++..+ ..+.++..+|+|++|++. +.+...++-++++| +|.+++|......+++.+...  +..+|+|.  ||+.
T Consensus       218 l~Dt~G-~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~  293 (357)
T 2e87_A          218 IIDTPG-LLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA  293 (357)
T ss_dssp             EEECTT-TSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred             EEeCCC-ccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence            111111 122456789999998876 66666788899999 999999999877777766542  55777777  8864

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.93  E-value=6.5e-10  Score=89.89  Aligned_cols=126  Identities=21%  Similarity=0.164  Sum_probs=74.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV  136 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  136 (239)
                      +++|+|+|||||||+.++|+++     |...++.         +             .+...........+.++.+.+|.
T Consensus         4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~---------d-------------~~~~~~~~~~~~~~~~i~~~~g~   56 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDA---------D-------------VVAREVVAKDSPLLSKIVEHFGA   56 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHTT-----TCCEEEH---------H-------------HHHHHTTCSSCHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHC-----CCcccch---------H-------------HHHHHHccCChHHHHHHHHHhCH
Confidence            6899999999999999999983     3222111         0             00000001112344556666664


Q ss_pred             CcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc-CCEEEEEecCHHHH--hhhcCe
Q 026376          137 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLF-QGGILMVSHDEHLI--SGSVEE  213 (239)
Q Consensus       137 ~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~tii~vsHd~~~~--~~~~d~  213 (239)
                      ..        -.|.|+.+|..+++....+|+.+..+  .+.++|.....+.+.+... +.++|+.+|.+...  ...||.
T Consensus        57 ~~--------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d~  126 (206)
T 1jjv_A           57 QI--------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCDR  126 (206)
T ss_dssp             TC--------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCSE
T ss_pred             HH--------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCCE
Confidence            31        13678999999999888887654333  3345555555555555543 45788888987654  567899


Q ss_pred             EEEEeC
Q 026376          214 LWVVSE  219 (239)
Q Consensus       214 i~~l~~  219 (239)
                      +++++-
T Consensus       127 vi~l~~  132 (206)
T 1jjv_A          127 ILVVDV  132 (206)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            888853

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.92  E-value=8.7e-10  Score=88.49  Aligned_cols=34  Identities=18%  Similarity=0.296  Sum_probs=28.9

Q ss_pred             HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHh
Q 026376          156 VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV  191 (239)
Q Consensus       156 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~  191 (239)
                      ...|++++.+|+++++|  ||++|..+...+++.+.
T Consensus       130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~  163 (199)
T 2f9l_A          130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNIL  163 (199)
T ss_dssp             HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHH
Confidence            45689999999999999  99999998887776654

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=98.87  E-value=2.2e-09  Score=103.52  Aligned_cols=147  Identities=16%  Similarity=0.109  Sum_probs=87.5

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHH
Q 026376           51 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH  130 (239)
Q Consensus        51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (239)
                      .+..|+.+.|+||+||||||++.++++...+..|    .+ ..+.++ + |.  ..+.......+..... ..      +
T Consensus       105 ~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~----~g-~~ilvl-~-P~--r~La~q~~~~l~~~~~-~~------v  168 (773)
T 2xau_A          105 LYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHL----EN-TQVACT-Q-PR--RVAAMSVAQRVAEEMD-VK------L  168 (773)
T ss_dssp             HHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGG----GT-CEEEEE-E-SC--HHHHHHHHHHHHHHTT-CC------B
T ss_pred             HHhCCCeEEEECCCCCCHHHHHHHHHHHhccccC----CC-ceEEec-C-ch--HHHHHHHHHHHHHHhC-Cc------h
Confidence            3567899999999999999999998776555442    01 111221 1 00  0000000001110000 00      0


Q ss_pred             HHhcCC----Cc-ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC-CCCHHHHHHHHHHHhhc---CCEEEE-E
Q 026376          131 LGSFGV----TG-NLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN-HLDLDAVEALIQGLVLF---QGGILM-V  200 (239)
Q Consensus       131 l~~~~l----~~-~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~-~LD~~~~~~l~~~l~~~---~~tii~-v  200 (239)
                      ...+|.    .. ...+..+..+|.|+.+|..++++++.+++++++|||.. +||......+++.+...   ..+|++ +
T Consensus       169 ~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SA  248 (773)
T 2xau_A          169 GEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSA  248 (773)
T ss_dssp             TTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred             hheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEec
Confidence            000110    00 00123456789999999999999999999999999996 99987766666655443   236666 4


Q ss_pred             ecCHHHHhhhcCe
Q 026376          201 SHDEHLISGSVEE  213 (239)
Q Consensus       201 sHd~~~~~~~~d~  213 (239)
                      ||+.+.+..+++.
T Consensus       249 T~~~~~l~~~~~~  261 (773)
T 2xau_A          249 TLDAEKFQRYFND  261 (773)
T ss_dssp             CSCCHHHHHHTTS
T ss_pred             cccHHHHHHHhcC
Confidence            9998887777764

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.83  E-value=4.1e-09  Score=96.22  Aligned_cols=114  Identities=21%  Similarity=0.297  Sum_probs=72.0

Q ss_pred             CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCC
Q 026376           42 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPG  121 (239)
Q Consensus        42 ~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~  121 (239)
                      ...++++++.+.+|  +.|+||+|+|||||+++|++.....           +.++.-  ....               .
T Consensus        38 ~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~-----------f~~is~--~~~~---------------~   87 (476)
T 2ce7_A           38 PSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP-----------FFHISG--SDFV---------------E   87 (476)
T ss_dssp             THHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC-----------EEEEEG--GGTT---------------T
T ss_pred             hHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC-----------eeeCCH--HHHH---------------H
Confidence            34677788888887  8899999999999999999854210           011100  0000               0


Q ss_pred             CcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC----------CCCCHHHHH---HHHH
Q 026376          122 VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS----------NHLDLDAVE---ALIQ  188 (239)
Q Consensus       122 ~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt----------~~LD~~~~~---~l~~  188 (239)
                                           ...  =++++++|..+++|....|.+|++||+.          ++.|.....   .++.
T Consensus        88 ---------------------~~~--g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~  144 (476)
T 2ce7_A           88 ---------------------LFV--GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLV  144 (476)
T ss_dssp             ---------------------CCT--THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHH
T ss_pred             ---------------------HHh--cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHH
Confidence                                 000  0267888999999999999999999994          355654433   3344


Q ss_pred             HHhhc----CCEEEEEecCHHHHh
Q 026376          189 GLVLF----QGGILMVSHDEHLIS  208 (239)
Q Consensus       189 ~l~~~----~~tii~vsHd~~~~~  208 (239)
                      .+...    +..||.+||+++.+.
T Consensus       145 ~ld~~~~~~~viVIaaTn~~~~Ld  168 (476)
T 2ce7_A          145 EMDGFDSKEGIIVMAATNRPDILD  168 (476)
T ss_dssp             HHHHSCGGGTEEEEEEESCGGGSC
T ss_pred             HHhccCCCCCEEEEEecCChhhhc
Confidence            34321    336888999986543

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.81  E-value=2.5e-09  Score=86.08  Aligned_cols=35  Identities=29%  Similarity=0.395  Sum_probs=30.1

Q ss_pred             EEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCce
Q 026376           50 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG   84 (239)
Q Consensus        50 l~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G   84 (239)
                      +++.+|++++|+||||||||||+++|++.+.|+.|
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~   35 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK   35 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence            46889999999999999999999999999977666

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.78  E-value=3.8e-10  Score=91.16  Aligned_cols=53  Identities=17%  Similarity=0.124  Sum_probs=40.2

Q ss_pred             EeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeE
Q 026376           32 SDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV   86 (239)
Q Consensus        32 ~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i   86 (239)
                      +|+++.+ +.....+..++..++|++++|+||||||||||+++|++.+. ..|.+
T Consensus         3 ~~~~~~~-~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~   55 (200)
T 3uie_A            3 TNIKWHE-CSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKL   55 (200)
T ss_dssp             --------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCC
T ss_pred             CCCcccc-cccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCce
Confidence            4666666 34456688888889999999999999999999999999987 67876

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.74  E-value=3.3e-08  Score=87.30  Aligned_cols=133  Identities=15%  Similarity=0.139  Sum_probs=74.9

Q ss_pred             CCCE-EEEECCCCCcHHHHHHHHhcCcC-----------CCceeEEecCceEEEEEeeccCCCCCCCCcHHHHH---HHh
Q 026376           54 LDSR-IAMVGPNGIGKSTILKLIAGELQ-----------PSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYM---MRC  118 (239)
Q Consensus        54 ~Ge~-~~iiG~NGsGKSTLl~~l~Gl~~-----------p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~---~~~  118 (239)
                      .|-. ++|+|++|||||||++.|+|...           |+.|.+.+++. .+.+. ..+-............+   ...
T Consensus       177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~-~v~l~-DT~G~i~~lp~~lve~f~~tl~~  254 (364)
T 2qtf_A          177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR-KIMLV-DTVGFIRGIPPQIVDAFFVTLSE  254 (364)
T ss_dssp             --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE-EEEEE-ECCCBCSSCCGGGHHHHHHHHHG
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE-EEEEE-eCCCchhcCCHHHHHHHHHHHHH
Confidence            3444 99999999999999999999876           56677777663 22211 11100000011111111   100


Q ss_pred             C------------CCCc---HH---HHHHHHHhcCCCccc---ccCCCCCCChHHHHHHHHH----HHh-ccCCCEEEEe
Q 026376          119 F------------PGVP---EQ---KLRAHLGSFGVTGNL---ALQPMYTLSGGQKSRVAFA----KIT-FKKPHIILLD  172 (239)
Q Consensus       119 ~------------~~~~---~~---~~~~~l~~~~l~~~~---~~~~~~~LSgGqkqrv~la----ral-~~~p~llllD  172 (239)
                      .            ....   .+   .+.++++.+++.+..   ...++..+|+++++++.++    +++ ..+|++    
T Consensus       255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----  330 (364)
T 2qtf_A          255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----  330 (364)
T ss_dssp             GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----
T ss_pred             HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----
Confidence            0            0111   11   234566766653211   1224567898888888877    666 444554    


Q ss_pred             CCCCCCCHHHHHHHHHHHhh
Q 026376          173 EPSNHLDLDAVEALIQGLVL  192 (239)
Q Consensus       173 EPt~~LD~~~~~~l~~~l~~  192 (239)
                      +|+|++|..+...+.+.+.+
T Consensus       331 ~~~SA~~g~gi~~L~~~I~~  350 (364)
T 2qtf_A          331 IPISALKRTNLELLRDKIYQ  350 (364)
T ss_dssp             EECBTTTTBSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHH
Confidence            89999999988888777654

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.70  E-value=1.4e-07  Score=82.65  Aligned_cols=127  Identities=16%  Similarity=0.180  Sum_probs=73.5

Q ss_pred             CCC--EEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHH
Q 026376           54 LDS--RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHL  131 (239)
Q Consensus        54 ~Ge--~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  131 (239)
                      .+.  .+.|.||+|+|||||++.+++...+..+.       .+.++....  .    .+.            ..-+..++
T Consensus        41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~-------~~~~i~~~~--~----~~~------------~~~~~~l~   95 (389)
T 1fnn_A           41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTA-------RFVYINGFI--Y----RNF------------TAIIGEIA   95 (389)
T ss_dssp             TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCC-------EEEEEETTT--C----CSH------------HHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCe-------eEEEEeCcc--C----CCH------------HHHHHHHH
Confidence            446  89999999999999999999988765311       122221110  0    011            11122333


Q ss_pred             HhcCCCcccccCCCCCCChHHHHHHHHHHH-hccCCCEEEEeCCCCCCCHHHHHHHHHHHhh------cCCEEEEEecCH
Q 026376          132 GSFGVTGNLALQPMYTLSGGQKSRVAFAKI-TFKKPHIILLDEPSNHLDLDAVEALIQGLVL------FQGGILMVSHDE  204 (239)
Q Consensus       132 ~~~~l~~~~~~~~~~~LSgGqkqrv~lara-l~~~p~llllDEPt~~LD~~~~~~l~~~l~~------~~~tii~vsHd~  204 (239)
                      ..++..     .+....+..+......... -..+|.+|++||+... |......+.+.+.+      .+.++|++||+.
T Consensus        96 ~~l~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~  169 (389)
T 1fnn_A           96 RSLNIP-----FPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND  169 (389)
T ss_dssp             HHTTCC-----CCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred             HHhCcc-----CCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence            444432     1112344444332221111 1245889999999876 88887777777643      245799999998


Q ss_pred             HHHhhhc
Q 026376          205 HLISGSV  211 (239)
Q Consensus       205 ~~~~~~~  211 (239)
                      ++...+.
T Consensus       170 ~~~~~l~  176 (389)
T 1fnn_A          170 AVLNNLD  176 (389)
T ss_dssp             HHHHTSC
T ss_pred             hHHHHhC
Confidence            7655443

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.68  E-value=5.7e-08  Score=85.38  Aligned_cols=42  Identities=36%  Similarity=0.411  Sum_probs=33.2

Q ss_pred             ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc--CcCCCceeEE
Q 026376           43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG--ELQPSSGTVF   87 (239)
Q Consensus        43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~G--l~~p~~G~i~   87 (239)
                      .+|++++++++   .++|+|++|||||||++.|+|  ++++.+|.+.
T Consensus        25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT   68 (360)
T 3t34_A           25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT   68 (360)
T ss_dssp             CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred             cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence            47899999997   899999999999999999999  6677777664

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.66  E-value=7.7e-09  Score=82.11  Aligned_cols=34  Identities=12%  Similarity=0.304  Sum_probs=29.2

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcCC-CceeEE
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGELQP-SSGTVF   87 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p-~~G~i~   87 (239)
                      +|++++|+||||||||||+++|++..++ ..|.|.
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~   38 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP   38 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeee
Confidence            6899999999999999999999998864 455553

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=98.65  E-value=8.5e-08  Score=83.82  Aligned_cols=128  Identities=15%  Similarity=0.192  Sum_probs=78.1

Q ss_pred             ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCC
Q 026376           43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGV  122 (239)
Q Consensus        43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~  122 (239)
                      .-|+.+.--+.+|+++.|.|++|+|||||+..++.......+.        +.|+.-+        .......       
T Consensus        34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~--------Vl~fSlE--------ms~~ql~-------   90 (338)
T 4a1f_A           34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRG--------VAVFSLE--------MSAEQLA-------   90 (338)
T ss_dssp             HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCE--------EEEEESS--------SCHHHHH-------
T ss_pred             hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCe--------EEEEeCC--------CCHHHHH-------
Confidence            3466665578999999999999999999998887654332222        3333211        1111110       


Q ss_pred             cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh-c-CCEEEEE
Q 026376          123 PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVL-F-QGGILMV  200 (239)
Q Consensus       123 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~-~-~~tii~v  200 (239)
                        .++......+.+.. +.   -+.||.++++|++.|...+.++++++.|+|...  +......++.+++ . +..+|||
T Consensus        91 --~Rlls~~~~v~~~~-l~---~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s--i~~i~~~ir~l~~~~gg~~lIVI  162 (338)
T 4a1f_A           91 --LRALSDLTSINMHD-LE---SGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR--IEQIRLQLRKLKSQHKELGIAFI  162 (338)
T ss_dssp             --HHHHHHHHCCCHHH-HH---HTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC--HHHHHHHHHHHHHHCTTEEEEEE
T ss_pred             --HHHHHHhhCCCHHH-Hh---cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc--HHHHHHHHHHHHHhcCCCCEEEE
Confidence              11112222222211 11   147999999999999999999999999998654  4444444444443 3 3456666


Q ss_pred             e
Q 026376          201 S  201 (239)
Q Consensus       201 s  201 (239)
                      -
T Consensus       163 D  163 (338)
T 4a1f_A          163 D  163 (338)
T ss_dssp             E
T ss_pred             e
Confidence            4

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.63  E-value=1.3e-08  Score=82.06  Aligned_cols=38  Identities=29%  Similarity=0.393  Sum_probs=29.4

Q ss_pred             eEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecC
Q 026376           49 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA   90 (239)
Q Consensus        49 sl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~   90 (239)
                      .++.++|++++|+||||||||||+++|++.+    |.+.+++
T Consensus        23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~   60 (200)
T 4eun_A           23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEA   60 (200)
T ss_dssp             -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEG
T ss_pred             hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcc
Confidence            3567789999999999999999999999987    7666554

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.63  E-value=1.5e-08  Score=81.62  Aligned_cols=38  Identities=34%  Similarity=0.373  Sum_probs=24.8

Q ss_pred             CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           42 PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        42 ~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      ...++|+||++.+|.+++|+|++||||||+.+.|++.+
T Consensus        12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            45889999999999999999999999999999999765

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.60  E-value=7.8e-09  Score=86.62  Aligned_cols=35  Identities=31%  Similarity=0.516  Sum_probs=33.6

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHh---cCcCCCceeEE
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIA---GELQPSSGTVF   87 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~---Gl~~p~~G~i~   87 (239)
                      .+|++++|+|||||||||++++|+   |+..|++|.++
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~   62 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY   62 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence            689999999999999999999999   99999999987

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=98.58  E-value=1.9e-08  Score=90.63  Aligned_cols=49  Identities=29%  Similarity=0.461  Sum_probs=38.0

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCce
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG   84 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G   84 (239)
                      |+++|+ +.|+ +.   .  .+++.+|++++|+||||||||||+++|+++..+.++
T Consensus         7 l~~~~~-~~~~-~~---~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~   55 (430)
T 1w1w_A            7 LELSNF-KSYR-GV---T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSN   55 (430)
T ss_dssp             EEEESC-SSCC-SE---E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC---
T ss_pred             EEEeCE-EEEC-Cc---e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhccccc
Confidence            678888 6773 21   2  255778999999999999999999999999888653

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.53  E-value=2.6e-09  Score=92.80  Aligned_cols=133  Identities=18%  Similarity=0.132  Sum_probs=76.5

Q ss_pred             eEEEcCCCCceeeeeeEEEeCCC------EEEEECCCCCcHHHHHHHHhcCcC--CCceeEEecCceEEEEEeeccCCCC
Q 026376           34 ASFGYPGGPILFKNLNFGIDLDS------RIAMVGPNGIGKSTILKLIAGELQ--PSSGTVFRSAKVRIAVFSQHHVDGL  105 (239)
Q Consensus        34 l~~~y~~~~~~l~~isl~i~~Ge------~~~iiG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~~~~~~~~~q~~~~~~  105 (239)
                      +++.| ++...+++++..+..+.      ++||+||||||||||+++|++++.  |++|.+        +++.++...  
T Consensus        66 l~~~~-~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v--------~~i~~D~f~--  134 (321)
T 3tqc_A           66 LSFYV-TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNV--------EVITTDGFL--  134 (321)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCE--------EEEEGGGGB--
T ss_pred             HHHhh-cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeE--------EEEeecccc--
Confidence            44455 33457788888888877      999999999999999999999987  455553        445554321  


Q ss_pred             CCCCcHHHHH--HHhC--C-CCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 026376          106 DLSSNPLLYM--MRCF--P-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL  180 (239)
Q Consensus       106 ~~~~~~~~~~--~~~~--~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~  180 (239)
                       .........  ....  + ..+...+.+.++.+.-.......|  .+|.+..+|+.-+...+..|+++|++.|..-.|.
T Consensus       135 -~~~~~l~~~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P--~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~  211 (321)
T 3tqc_A          135 -YSNAKLEKQGLMKRKGFPESYDMPSLLRVLNAIKSGQRNVRIP--VYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTG  211 (321)
T ss_dssp             -CCHHHHHHTTCGGGTTSGGGBCHHHHHHHHHHHHTTCSSEEEE--EEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred             -cchhhhhhHHHHhhccCcccccHHHHHHHHHhhhccccccccc--hhhhhccccccCceeeccCCCEEEEEcccccccc
Confidence             111111110  0000  0 122344445554442211011122  2333334444333445678999999999887765

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.52  E-value=7.2e-08  Score=84.14  Aligned_cols=130  Identities=19%  Similarity=0.226  Sum_probs=69.0

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHH
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG  132 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  132 (239)
                      ..+..+.|.||+|+|||||++.+++...+..|.     ...+.++.-...      .+.            ......++.
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~-----~~~~~~i~~~~~------~~~------------~~~~~~i~~   99 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG-----KFKHVYINTRQI------DTP------------YRVLADLLE   99 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCS-----SCEEEEEEHHHH------CSH------------HHHHHHHTT
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC-----CceEEEEECCCC------CCH------------HHHHHHHHH
Confidence            457899999999999999999999877554321     011122211000      000            111223333


Q ss_pred             hcCCCcccccCCCCCCChHHH-HHHHHHHHhccCCCEEEEeCCCCCCC---HHHHHHHHHHHhh---cCCEEEEEecCHH
Q 026376          133 SFGVTGNLALQPMYTLSGGQK-SRVAFAKITFKKPHIILLDEPSNHLD---LDAVEALIQGLVL---FQGGILMVSHDEH  205 (239)
Q Consensus       133 ~~~l~~~~~~~~~~~LSgGqk-qrv~laral~~~p~llllDEPt~~LD---~~~~~~l~~~l~~---~~~tii~vsHd~~  205 (239)
                      .++...     +....+..+. +++.-+..-...|.+|++||+....+   ......+.+.+..   .+.++|++||+..
T Consensus       100 ~l~~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~  174 (386)
T 2qby_A          100 SLDVKV-----PFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK  174 (386)
T ss_dssp             TTSCCC-----CSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred             HhCCCC-----CCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence            333321     1123344442 22221111123488999999987663   3344555555532   2347899999886


Q ss_pred             HHhhh
Q 026376          206 LISGS  210 (239)
Q Consensus       206 ~~~~~  210 (239)
                      ....+
T Consensus       175 ~~~~~  179 (386)
T 2qby_A          175 FVDLL  179 (386)
T ss_dssp             GGGGC
T ss_pred             hHhhh
Confidence            54443

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.50  E-value=3.5e-09  Score=88.37  Aligned_cols=57  Identities=23%  Similarity=0.360  Sum_probs=46.8

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEec
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS   89 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~   89 (239)
                      ..+++++.+.|. ...+++++++++++|  ++|+||||||||||+++|++...  .|.+.++
T Consensus        25 ~~~l~~l~~~~~-~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~   81 (254)
T 1ixz_A           25 KEELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS   81 (254)
T ss_dssp             HHHHHHHHHHHH-CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred             HHHHHHHHHHHH-CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEee
Confidence            345677777773 446889999999999  99999999999999999999875  5666554

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.49  E-value=3.9e-09  Score=89.45  Aligned_cols=55  Identities=24%  Similarity=0.402  Sum_probs=45.0

Q ss_pred             EEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEec
Q 026376           30 SFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS   89 (239)
Q Consensus        30 ~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~   89 (239)
                      +++++.+.|. ...+++++++++.+|  ++|+||||||||||+++|++...  .|.|.++
T Consensus        51 ~l~~l~~~~~-~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~  105 (278)
T 1iy2_A           51 ELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS  105 (278)
T ss_dssp             HHHHHHHHHH-CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred             HHHHHHHHHH-CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEec
Confidence            4566666673 346789999999999  99999999999999999999875  6666654

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.49  E-value=6.8e-08  Score=78.38  Aligned_cols=29  Identities=24%  Similarity=0.489  Sum_probs=27.5

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcCcCC
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGELQP   81 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p   81 (239)
                      ++|++++|+||||||||||++.|++.+++
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence            57999999999999999999999999887

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.48  E-value=4.2e-08  Score=80.86  Aligned_cols=37  Identities=16%  Similarity=0.071  Sum_probs=31.7

Q ss_pred             eEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEec
Q 026376           49 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS   89 (239)
Q Consensus        49 sl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~   89 (239)
                      +.+.++|++++|.|+||||||||+++|+|.    .|+|.+.
T Consensus        14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~   50 (230)
T 2vp4_A           14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLL   50 (230)
T ss_dssp             BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEE
T ss_pred             cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEE
Confidence            345679999999999999999999999998    6767654

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.47  E-value=3.3e-08  Score=79.83  Aligned_cols=38  Identities=16%  Similarity=0.135  Sum_probs=33.8

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEe
Q 026376           51 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR   88 (239)
Q Consensus        51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~   88 (239)
                      ...+|++++|+|+||||||||+++|++.+++..|.|..
T Consensus        18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~   55 (201)
T 1rz3_A           18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCV   55 (201)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEE
Confidence            35789999999999999999999999999888887754

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.46  E-value=2.1e-09  Score=92.52  Aligned_cols=148  Identities=15%  Similarity=0.110  Sum_probs=72.5

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhcCcC-CCceeEEecCceEEEEEeeccCC--CCCCCC-c--HHHHHHHhCCCCcHHHHH
Q 026376           55 DSRIAMVGPNGIGKSTILKLIAGELQ-PSSGTVFRSAKVRIAVFSQHHVD--GLDLSS-N--PLLYMMRCFPGVPEQKLR  128 (239)
Q Consensus        55 Ge~~~iiG~NGsGKSTLl~~l~Gl~~-p~~G~i~~~~~~~~~~~~q~~~~--~~~~~~-~--~~~~~~~~~~~~~~~~~~  128 (239)
                      +.+++|+|++|+|||||++.|.|... +.++..........+++.+....  ..+... .  ....+...+..    .+.
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~----~~~   83 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNK----AAS   83 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTC----CTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHH----HHH
Confidence            44899999999999999999999742 11111100111234555543210  001111 1  00000000000    001


Q ss_pred             HHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhc--cCCCEEEEeCCCCCCCHHH-HHHH---HHHHhh-cCC--EEEE
Q 026376          129 AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITF--KKPHIILLDEPSNHLDLDA-VEAL---IQGLVL-FQG--GILM  199 (239)
Q Consensus       129 ~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~--~~p~llllDEPt~~LD~~~-~~~l---~~~l~~-~~~--tii~  199 (239)
                      ..++.+++.-...+.  ..+|.|++   .+++++.  ..|.++++    |.+|... ...+   ++.+.+ .+.  .+.+
T Consensus        84 ~~l~~~D~vl~Vvd~--~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~i  154 (301)
T 1ega_A           84 SSIGDVELVIFVVEG--TRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPI  154 (301)
T ss_dssp             SCCCCEEEEEEEEET--TCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred             HHHhcCCEEEEEEeC--CCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEE
Confidence            111222211111222  23899886   5566665  67999998    8899764 3433   333433 333  4556


Q ss_pred             EecCHHHHhhhcCeEE
Q 026376          200 VSHDEHLISGSVEELW  215 (239)
Q Consensus       200 vsHd~~~~~~~~d~i~  215 (239)
                      ++|+-+-+..++|.+.
T Consensus       155 SA~~g~~v~~l~~~i~  170 (301)
T 1ega_A          155 SAETGLNVDTIAAIVR  170 (301)
T ss_dssp             CTTTTTTHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHH
Confidence            6777666666655543

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.46  E-value=2.4e-06  Score=75.17  Aligned_cols=36  Identities=22%  Similarity=0.303  Sum_probs=31.8

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeE
Q 026376           51 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV   86 (239)
Q Consensus        51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i   86 (239)
                      -+.+|+++.|.||+|||||||+..+++...+..|.+
T Consensus        57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V   92 (356)
T 3hr8_A           57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA   92 (356)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence            378999999999999999999999999887766654

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.45  E-value=6.6e-08  Score=78.23  Aligned_cols=32  Identities=19%  Similarity=0.401  Sum_probs=26.9

Q ss_pred             eEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376           49 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        49 sl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      |+...+|++++|+||||||||||++.|++..+
T Consensus        13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            34556899999999999999999999999875

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.44  E-value=3.6e-08  Score=85.66  Aligned_cols=43  Identities=26%  Similarity=0.271  Sum_probs=39.9

Q ss_pred             eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEe
Q 026376           46 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR   88 (239)
Q Consensus        46 ~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~   88 (239)
                      ++++|++.+|++++|+|+||+||||++..|++.+.+..|+|.+
T Consensus        96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVll  138 (320)
T 1zu4_A           96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLI  138 (320)
T ss_dssp             CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence            6899999999999999999999999999999999988888764

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.44  E-value=6.7e-07  Score=80.57  Aligned_cols=109  Identities=17%  Similarity=0.085  Sum_probs=64.2

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHh
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGS  133 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  133 (239)
                      ++.+++++|+|||||||++..|++.+.+..++|.+        +.-+..     ....            .+.+..+.+.
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVll--------v~~D~~-----r~~a------------~eqL~~~~~~  150 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGL--------VAADVY-----RPAA------------YDQLLQLGNQ  150 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEE--------EEECCS-----CHHH------------HHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE--------EecCcc-----chhH------------HHHHHHHHHh
Confidence            57899999999999999999999998877666642        222210     0000            1122233344


Q ss_pred             cCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC-CC--CCHHHHHHHHHHH
Q 026376          134 FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS-NH--LDLDAVEALIQGL  190 (239)
Q Consensus       134 ~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt-~~--LD~~~~~~l~~~l  190 (239)
                      .++.-. .  .....+.-.-.+-+++.+...+++++|+|+|- .+  .|.....++...+
T Consensus       151 ~gv~~~-~--~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~  207 (433)
T 3kl4_A          151 IGVQVY-G--EPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMY  207 (433)
T ss_dssp             TTCCEE-C--CTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHH
T ss_pred             cCCcee-e--ccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHH
Confidence            454311 1  11112222223345666666789999999987 44  6776655555433

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=98.42  E-value=1.4e-06  Score=76.13  Aligned_cols=149  Identities=11%  Similarity=0.189  Sum_probs=78.0

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhcC--cCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHH
Q 026376           51 GIDLDSRIAMVGPNGIGKSTILKLIAGE--LQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLR  128 (239)
Q Consensus        51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl--~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (239)
                      -+++|+++.|.||+|||||||+..++..  .++..|-    ....+.|+.-+.    .+....+....... +.+.+   
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg----~~~~vlyi~~E~----~~~~~~l~~~~~~~-g~~~~---  185 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGY----PGGKIIFIDTEN----TFRPDRLRDIADRF-NVDHD---  185 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTB----CCCEEEEEESSS----CCCHHHHHHHHHHT-TCCHH---
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCC----CCCeEEEEECCC----CCCHHHHHHHHHHc-CCCHH---
Confidence            4789999999999999999999988874  3221110    011233443221    11111111111111 12221   


Q ss_pred             HHHHhcCCCcccccCCCCCCChHHH-HHHHHHHHhc----cCCCEEEEeCCCCCCCHH--------H----HHHHHHHH-
Q 026376          129 AHLGSFGVTGNLALQPMYTLSGGQK-SRVAFAKITF----KKPHIILLDEPSNHLDLD--------A----VEALIQGL-  190 (239)
Q Consensus       129 ~~l~~~~l~~~~~~~~~~~LSgGqk-qrv~laral~----~~p~llllDEPt~~LD~~--------~----~~~l~~~l-  190 (239)
                      ++++.+.+.     +   ..+..+. +.+..++.++    .+++++++|+.++-....        .    ...++..| 
T Consensus       186 ~~l~~l~~~-----~---~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~  257 (343)
T 1v5w_A          186 AVLDNVLYA-----R---AYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQ  257 (343)
T ss_dssp             HHHHTEEEE-----E---CCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHH
T ss_pred             HHHhceeEe-----e---cCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence            233332110     1   1233322 4444455555    679999999999876432        1    12333333 


Q ss_pred             ---hhcCCEEEEEecCHHH-------------------HhhhcCeEEEEeC
Q 026376          191 ---VLFQGGILMVSHDEHL-------------------ISGSVEELWVVSE  219 (239)
Q Consensus       191 ---~~~~~tii~vsHd~~~-------------------~~~~~d~i~~l~~  219 (239)
                         ++.+.+||+++|-...                   +...+|-++.|+.
T Consensus       258 ~la~~~~~~Vi~~nq~~~~~~~~~~~~g~~~~~~gg~~i~~~ad~~l~l~r  308 (343)
T 1v5w_A          258 KISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRK  308 (343)
T ss_dssp             HHHHHHTCEEEEEECC-------------------CCTTTTSSSEEEEEEE
T ss_pred             HHHHHhCCEEEEEeeceecCCCccccCCCCCcCCchHHHHHhCCEEEEEEE
Confidence               3457789999995432                   4456788888864

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.39  E-value=3.9e-08  Score=93.36  Aligned_cols=133  Identities=14%  Similarity=0.050  Sum_probs=70.6

Q ss_pred             eEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC--CceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCC-CCcHH
Q 026376           49 NFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP--SSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP-GVPEQ  125 (239)
Q Consensus        49 sl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~-~~~~~  125 (239)
                      |++++++..++|+|+||+|||||++.|++...+  ..|+| .++.         ..  .+.  .... ...... .....
T Consensus         3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~---------~~--~d~--~~~e-~~~giti~~~~~   67 (665)
T 2dy1_A            3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGT---------TT--TDY--TPEA-KLHRTTVRTGVA   67 (665)
T ss_dssp             ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTC---------CS--SCC--SHHH-HHTTSCCSCEEE
T ss_pred             CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCc---------cc--ccC--CHHH-HhcCCeEEecce
Confidence            467788999999999999999999999976654  56665 2211         00  000  0100 000000 00000


Q ss_pred             HHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHH
Q 026376          126 KLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEH  205 (239)
Q Consensus       126 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~  205 (239)
                      .    +..-+....+.+.+.. -.-   .......+-..+.-++++| |+.+++..+.. +++.+...+..+|++.|.++
T Consensus        68 ~----~~~~~~~~nliDTpG~-~~f---~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~-~~~~~~~~~ip~ilv~NKiD  137 (665)
T 2dy1_A           68 P----LLFRGHRVFLLDAPGY-GDF---VGEIRGALEAADAALVAVS-AEAGVQVGTER-AWTVAERLGLPRMVVVTKLD  137 (665)
T ss_dssp             E----EEETTEEEEEEECCCS-GGG---HHHHHHHHHHCSEEEEEEE-TTTCSCHHHHH-HHHHHHHTTCCEEEEEECGG
T ss_pred             E----EeeCCEEEEEEeCCCc-cch---HHHHHHHHhhcCcEEEEEc-CCcccchhHHH-HHHHHHHccCCEEEEecCCc
Confidence            0    0000000112232211 000   1122333345788899999 99999988764 45555566778888898877


Q ss_pred             H
Q 026376          206 L  206 (239)
Q Consensus       206 ~  206 (239)
                      .
T Consensus       138 ~  138 (665)
T 2dy1_A          138 K  138 (665)
T ss_dssp             G
T ss_pred             h
Confidence            5

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=98.38  E-value=1.6e-06  Score=75.05  Aligned_cols=149  Identities=11%  Similarity=0.169  Sum_probs=75.2

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhcC-cCCC-ceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHH
Q 026376           51 GIDLDSRIAMVGPNGIGKSTILKLIAGE-LQPS-SGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLR  128 (239)
Q Consensus        51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl-~~p~-~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (239)
                      -+++|+++.|.||+|||||||+..++.. ..|. .|-    ....+.|+.-+.    .+....+....... +.+.+   
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg----~~~~vlyi~~e~----~~~~~~l~~~~~~~-g~~~~---  170 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGG----LSGKAVYIDTEG----TFRWERIENMAKAL-GLDID---  170 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC----CSCEEEEEESSS----CCCHHHHHHHHHHT-TCCHH---
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCC----CCCeEEEEECCC----CCCHHHHHHHHHHh-CCCHH---
Confidence            5789999999999999999999888764 2332 110    011233332221    01111111111111 12222   


Q ss_pred             HHHHhcCCCcccccCCCCCCChH-HHHHHHHHHHhc---cCCCEEEEeCCCCCCCH--------HH----HHHHHHHH--
Q 026376          129 AHLGSFGVTGNLALQPMYTLSGG-QKSRVAFAKITF---KKPHIILLDEPSNHLDL--------DA----VEALIQGL--  190 (239)
Q Consensus       129 ~~l~~~~l~~~~~~~~~~~LSgG-qkqrv~laral~---~~p~llllDEPt~~LD~--------~~----~~~l~~~l--  190 (239)
                      ++++.+-+     .+   ..+.. +.+.+..++.++   .+|+++++|+.++-...        ..    ...++..|  
T Consensus       171 ~~~~~l~~-----~~---~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~  242 (324)
T 2z43_A          171 NVMNNIYY-----IR---AINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTR  242 (324)
T ss_dssp             HHHHTEEE-----EE---CCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHhccEEE-----Ee---CCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHH
Confidence            12222111     11   12333 235566677776   67999999999986542        11    12333333  


Q ss_pred             --hhcCCEEEEEecCHHH----------------HhhhcCeEEEEeC
Q 026376          191 --VLFQGGILMVSHDEHL----------------ISGSVEELWVVSE  219 (239)
Q Consensus       191 --~~~~~tii~vsHd~~~----------------~~~~~d~i~~l~~  219 (239)
                        ++.+.+||+++|-...                +...+|.++.|+.
T Consensus       243 la~~~~~~Vi~~nq~~~~~~~~~~~~~~~~gg~~l~~~~d~~l~l~r  289 (324)
T 2z43_A          243 LAEVYDIAVIITNQVMARPDMFYGDPTVAVGGHTLYHVPGIRIQLKK  289 (324)
T ss_dssp             HHHHHTCEEEEEEEC------------------------CEEEEEEE
T ss_pred             HHHHhCCEEEEEcceeecCCCcCCCCCCCCchHHHHhhCcEEEEEEE
Confidence              3457789999885432                3445777777753

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.36  E-value=6.9e-08  Score=89.65  Aligned_cols=40  Identities=25%  Similarity=0.303  Sum_probs=35.6

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCce-eEE-ecC
Q 026376           51 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG-TVF-RSA   90 (239)
Q Consensus        51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G-~i~-~~~   90 (239)
                      .+.+|++++|+|+||||||||+++|+|.+.|++| ++. +++
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg  406 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG  406 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence            5789999999999999999999999999999887 674 554

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=98.35  E-value=6.7e-08  Score=85.59  Aligned_cols=52  Identities=23%  Similarity=0.264  Sum_probs=47.6

Q ss_pred             eEEEEeeEEEcCCCCceee--------------eeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           28 IISFSDASFGYPGGPILFK--------------NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~--------------~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      -+.++|+++.|+..+..++              |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus       133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence            3678999999987777888              899999999999999999999999999999875

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.35  E-value=4e-09  Score=92.32  Aligned_cols=59  Identities=19%  Similarity=0.126  Sum_probs=49.2

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF   87 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~   87 (239)
                      +++.+++.+.| +...+++++++.+.+|.+++|+|+||+|||||++.|++.+.+..|++.
T Consensus        30 ~ie~~~~~~~~-~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~   88 (341)
T 2p67_A           30 LVESRHPRHQA-LSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVA   88 (341)
T ss_dssp             HHHCCCHHHHH-HHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred             HhhcCCchhhh-HHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence            35566666666 344678999999999999999999999999999999999888777664

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.35  E-value=1.4e-07  Score=73.98  Aligned_cols=33  Identities=24%  Similarity=0.352  Sum_probs=27.9

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEec
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS   89 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~   89 (239)
                      .+|++++|+|+|||||||++++|++.+    |.+.++
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~   38 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLD   38 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEE
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEe
Confidence            468999999999999999999999875    555544

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=98.33  E-value=8.6e-07  Score=76.59  Aligned_cols=131  Identities=11%  Similarity=0.155  Sum_probs=73.1

Q ss_pred             ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCC
Q 026376           43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGV  122 (239)
Q Consensus        43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~  122 (239)
                      .-|+.+.--+.+|+++.|.|++|+|||||+..++....- .|       ..+.|+.-+        .......       
T Consensus        56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g-------~~vl~~slE--------~s~~~l~-------  112 (315)
T 3bh0_A           56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND-------DVVNLHSLE--------MGKKENI-------  112 (315)
T ss_dssp             HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT-------CEEEEEESS--------SCHHHHH-------
T ss_pred             HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC-------CeEEEEECC--------CCHHHHH-------
Confidence            456777666999999999999999999998877643211 12       123333211        1111100       


Q ss_pred             cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHh-hcCCE--EEE
Q 026376          123 PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV-LFQGG--ILM  199 (239)
Q Consensus       123 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~-~~~~t--ii~  199 (239)
                        .++......+.+.. +.... ..||.++++|+..|...+.++++++.|+|.  ++.......++.+. +.+..  +|+
T Consensus       113 --~R~~~~~~~i~~~~-l~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~--~~~~~i~~~i~~l~~~~~~~~~lVV  186 (315)
T 3bh0_A          113 --KRLIVTAGSINAQK-IKAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRKNPGKRVIVM  186 (315)
T ss_dssp             --HHHHHHHTTCCHHH-HHSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSC--CBHHHHHHHHHHHHHTSSSCCEEEE
T ss_pred             --HHHHHHHcCCCHHH-HhcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCC--CCHHHHHHHHHHHHHhcCCCCeEEE
Confidence              11111111122111 11100 128888888888888888888888888876  44444443334333 33445  777


Q ss_pred             Eec
Q 026376          200 VSH  202 (239)
Q Consensus       200 vsH  202 (239)
                      |-|
T Consensus       187 ID~  189 (315)
T 3bh0_A          187 IDY  189 (315)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            654

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.32  E-value=2.3e-07  Score=72.35  Aligned_cols=28  Identities=43%  Similarity=0.559  Sum_probs=25.2

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcCC
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGELQP   81 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p   81 (239)
                      .|.+++|+|+||||||||+++|++.+.+
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~   30 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM   30 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4789999999999999999999998754

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=98.31  E-value=3.3e-07  Score=70.66  Aligned_cols=31  Identities=26%  Similarity=0.326  Sum_probs=25.7

Q ss_pred             eeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q 026376           46 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        46 ~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      ++.++++.+| +.+|+|||||||||++.+|.-
T Consensus        15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence            4456666665 999999999999999999874

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=98.28  E-value=2.8e-06  Score=72.04  Aligned_cols=101  Identities=21%  Similarity=0.255  Sum_probs=63.9

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHh
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGS  133 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  133 (239)
                      ++..+.|.||+|+|||||++++++....   .+        ..+.  . ..  +                          
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~~~---~~--------~~i~--~-~~--l--------------------------   90 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATECSA---TF--------LNIS--A-AS--L--------------------------   90 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTTC---EE--------EEEE--S-TT--T--------------------------
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhCC---Ce--------EEee--H-HH--H--------------------------
Confidence            5678999999999999999999985421   00        0000  0 00  0                          


Q ss_pred             cCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH----------HHHHHHHHHhhcC-------CE
Q 026376          134 FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLD----------AVEALIQGLVLFQ-------GG  196 (239)
Q Consensus       134 ~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~----------~~~~l~~~l~~~~-------~t  196 (239)
                             ....  .-+++++.|..++.+...+|.+|++||+.+-++..          ....++..+....       ..
T Consensus        91 -------~~~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~  161 (297)
T 3b9p_A           91 -------TSKY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIV  161 (297)
T ss_dssp             -------SSSS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEE
T ss_pred             -------hhcc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEE
Confidence                   0000  11367788888888888899999999998776532          2234444444321       24


Q ss_pred             EEEEecCHH
Q 026376          197 ILMVSHDEH  205 (239)
Q Consensus       197 ii~vsHd~~  205 (239)
                      ||.+|++.+
T Consensus       162 vi~~tn~~~  170 (297)
T 3b9p_A          162 VLAATNRPQ  170 (297)
T ss_dssp             EEEEESCGG
T ss_pred             EEeecCChh
Confidence            677788754

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.25  E-value=5e-07  Score=72.80  Aligned_cols=31  Identities=23%  Similarity=0.164  Sum_probs=28.2

Q ss_pred             EEEeCCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376           50 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        50 l~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      -++++|.+++|+|++|||||||.++|++.++
T Consensus        16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~   46 (207)
T 2qt1_A           16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP   46 (207)
T ss_dssp             CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            3678899999999999999999999999864

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=98.21  E-value=1e-05  Score=66.54  Aligned_cols=29  Identities=45%  Similarity=0.542  Sum_probs=24.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCcee
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQPSSGT   85 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~   85 (239)
                      .++|+|++|+|||||++.|+|...+.++.
T Consensus        31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~   59 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSILGRKVFHSGT   59 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence            57999999999999999999987766654

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.20  E-value=1.3e-06  Score=78.96  Aligned_cols=41  Identities=22%  Similarity=0.231  Sum_probs=29.8

Q ss_pred             cCCCEEEEeCCCCCCCH-HHHHHHHHHH---hhcCCEEEEEecCH
Q 026376          164 KKPHIILLDEPSNHLDL-DAVEALIQGL---VLFQGGILMVSHDE  204 (239)
Q Consensus       164 ~~p~llllDEPt~~LD~-~~~~~l~~~l---~~~~~tii~vsHd~  204 (239)
                      .+|++|++||+..-.+. .....++..+   .+.+..||++||+.
T Consensus       193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~  237 (440)
T 2z4s_A          193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE  237 (440)
T ss_dssp             TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred             CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence            48999999999887764 4555565554   34466899999973

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.18  E-value=2.5e-07  Score=75.36  Aligned_cols=34  Identities=38%  Similarity=0.649  Sum_probs=29.4

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhcCc---CCCceeEEe
Q 026376           55 DSRIAMVGPNGIGKSTILKLIAGEL---QPSSGTVFR   88 (239)
Q Consensus        55 Ge~~~iiG~NGsGKSTLl~~l~Gl~---~p~~G~i~~   88 (239)
                      +.+++|+||+||||||+.++|++.+   .++.|.+..
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~   41 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR   41 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence            5689999999999999999999866   677787754

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=98.15  E-value=8.8e-07  Score=73.11  Aligned_cols=43  Identities=23%  Similarity=0.343  Sum_probs=31.0

Q ss_pred             eeeeeeEEEe---CCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEE
Q 026376           44 LFKNLNFGID---LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF   87 (239)
Q Consensus        44 ~l~~isl~i~---~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~   87 (239)
                      -|.++||.+.   +|.+++|.|++||||||+++.|+..+.+ .+.+.
T Consensus        12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~   57 (229)
T 4eaq_A           12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI   57 (229)
T ss_dssp             --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred             CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence            3566677766   8999999999999999999999999887 55553

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=98.09  E-value=1.8e-06  Score=69.83  Aligned_cols=30  Identities=27%  Similarity=0.374  Sum_probs=25.0

Q ss_pred             eeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 026376           46 KNLNFGIDLDSRIAMVGPNGIGKSTILKLIA   76 (239)
Q Consensus        46 ~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~   76 (239)
                      .+.++++.+| +++|+|||||||||++.+|.
T Consensus        15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred             cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence            4556677665 99999999999999999885

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.08  E-value=9.7e-07  Score=77.41  Aligned_cols=36  Identities=28%  Similarity=0.434  Sum_probs=31.1

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEe
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR   88 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~   88 (239)
                      .++.+++|+|++|||||||++.|+|.+.+.+|+|.+
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V  107 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSV  107 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEE
Confidence            347899999999999999999999988887777643

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=98.07  E-value=1.1e-06  Score=69.16  Aligned_cols=31  Identities=23%  Similarity=0.275  Sum_probs=27.0

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcCcCCCce
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGELQPSSG   84 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G   84 (239)
                      .+|++++|+|++||||||+.++|++.+++ .|
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g   33 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HG   33 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CC
Confidence            36899999999999999999999998765 45

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=98.05  E-value=8.1e-07  Score=82.37  Aligned_cols=57  Identities=18%  Similarity=0.224  Sum_probs=45.3

Q ss_pred             EEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEec
Q 026376           31 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS   89 (239)
Q Consensus        31 ~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~   89 (239)
                      ++++.+.| ....++.++++++ +|+.++|+||||+|||||+++|++...+..|.|...
T Consensus        86 ~~~vk~~i-~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~  142 (543)
T 3m6a_A           86 LEKVKERI-LEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLG  142 (543)
T ss_dssp             CHHHHHHH-HHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCC
T ss_pred             HHHHHHHH-HHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEec
Confidence            34555555 2334678888888 899999999999999999999999998887777543

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.03  E-value=6.1e-07  Score=80.67  Aligned_cols=53  Identities=15%  Similarity=0.072  Sum_probs=43.8

Q ss_pred             EEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEe
Q 026376           31 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR   88 (239)
Q Consensus        31 ~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~   88 (239)
                      .+++++.|++. .  ++++|+  +|++++++|+|||||||++..|++.+.+..|+|..
T Consensus        79 ~~~L~~~~~~~-~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vll  131 (425)
T 2ffh_A           79 YEALKEALGGE-A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLL  131 (425)
T ss_dssp             HHHHHHHTTSS-C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             HHHHHHHhCCC-c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence            34677778432 2  678888  89999999999999999999999999998887754

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=98.02  E-value=1.2e-06  Score=70.10  Aligned_cols=42  Identities=19%  Similarity=0.407  Sum_probs=31.6

Q ss_pred             EEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q 026376           35 SFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        35 ~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      ++.|++-..+++++|+..++. .++|+|++|+|||||++.+++
T Consensus         6 ~~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A            6 DWIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence            456765556889999998887 689999999999999999987

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=98.02  E-value=5.2e-06  Score=73.21  Aligned_cols=44  Identities=20%  Similarity=0.324  Sum_probs=33.3

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA   76 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~   76 (239)
                      +.+..|+..-   ...+++..+++.+| +++|+|||||||||+|.+|+
T Consensus         3 M~l~~L~l~n---Fr~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A            3 MILKEIRMNN---FKSHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EEEEEEEEEE---ETTEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred             cEEeEEEEEc---cccccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence            4555555431   12357788888875 99999999999999999986

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=98.01  E-value=8.5e-07  Score=81.65  Aligned_cols=34  Identities=24%  Similarity=0.295  Sum_probs=31.2

Q ss_pred             eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 026376           44 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        44 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .+++++|++.+| +.+|+|+||||||||+.+|..+
T Consensus        50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l   83 (517)
T 4ad8_A           50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLL   83 (517)
T ss_dssp             TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred             ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence            568899999999 9999999999999999999665

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.96  E-value=8.8e-05  Score=65.11  Aligned_cols=28  Identities=18%  Similarity=0.404  Sum_probs=24.9

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           52 IDLDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        52 i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      +.+|+++.|.|++|+|||||...++...
T Consensus        60 l~~G~ii~I~G~pGsGKTtLal~la~~~   87 (356)
T 1u94_A           60 LPMGRIVEIYGPESSGKTTLTLQVIAAA   87 (356)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999998777543

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.94  E-value=1.8e-06  Score=69.89  Aligned_cols=35  Identities=20%  Similarity=0.168  Sum_probs=31.6

Q ss_pred             EEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCce
Q 026376           50 FGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG   84 (239)
Q Consensus        50 l~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G   84 (239)
                      +.+.+|.+++|+|++||||||+.+.|++.+.|..|
T Consensus        20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g   54 (211)
T 1m7g_A           20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRR   54 (211)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred             ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence            45678999999999999999999999999887777

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.93  E-value=8.1e-07  Score=78.26  Aligned_cols=51  Identities=20%  Similarity=0.281  Sum_probs=36.8

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCcee
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGT   85 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~   85 (239)
                      .+.+.|++..|. ++.++++++|+|      +|+|++|+|||||++.|.|...+..+.
T Consensus        17 ~v~~~~l~~~~~-~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~   67 (361)
T 2qag_A           17 YVGFANLPNQVH-RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV   67 (361)
T ss_dssp             ----CCHHHHHH-THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----
T ss_pred             eEEeccchHHhC-CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence            588999999884 556788999887      999999999999999998876554443

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.88  E-value=6.7e-06  Score=65.06  Aligned_cols=32  Identities=25%  Similarity=0.376  Sum_probs=26.5

Q ss_pred             eeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 026376           47 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        47 ~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      ++|++..+|..++|+|+.||||||+.+.|+..
T Consensus         2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            57888999999999999999999999999875

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.86  E-value=3.5e-06  Score=66.58  Aligned_cols=36  Identities=31%  Similarity=0.301  Sum_probs=30.9

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeE
Q 026376           51 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV   86 (239)
Q Consensus        51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i   86 (239)
                      ...+|.+++|+|++||||||+.+.|+..+.+..+.+
T Consensus         9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~   44 (186)
T 2yvu_A            9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV   44 (186)
T ss_dssp             CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence            445789999999999999999999999887766655

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.85  E-value=6.3e-06  Score=65.94  Aligned_cols=21  Identities=38%  Similarity=0.646  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q 026376           57 RIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      +++|+|+|||||||+.++|++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            689999999999999999999

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.83  E-value=1.3e-05  Score=63.38  Aligned_cols=33  Identities=18%  Similarity=0.437  Sum_probs=20.8

Q ss_pred             eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q 026376           44 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        44 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      +++++++..++. .++|+|++|+|||||++.+++
T Consensus        13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred             HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence            678999988876 789999999999999999997

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.82  E-value=2.6e-06  Score=73.11  Aligned_cols=53  Identities=21%  Similarity=0.116  Sum_probs=43.0

Q ss_pred             EEeeEEEcCCCCceeee-eeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEE
Q 026376           31 FSDASFGYPGGPILFKN-LNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF   87 (239)
Q Consensus        31 ~~~l~~~y~~~~~~l~~-isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~   87 (239)
                      .+++...|++..   ++ ++|+.+ |.+++++|+||+||||++..|++.+.+..++|.
T Consensus        77 ~~~l~~~~~~~~---~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~  130 (297)
T 1j8m_F           77 YDELSNLFGGDK---EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVG  130 (297)
T ss_dssp             HHHHHHHTTCSC---CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEE
T ss_pred             HHHHHHHhcccc---ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence            456667774332   56 888876 999999999999999999999999988777765

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.82  E-value=9.5e-06  Score=63.25  Aligned_cols=27  Identities=26%  Similarity=0.489  Sum_probs=23.4

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      ++|..++|+|++|+|||||++.++|..
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            367889999999999999999999865

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.80  E-value=9.8e-06  Score=65.13  Aligned_cols=30  Identities=27%  Similarity=0.564  Sum_probs=26.3

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376           51 GIDLDSRIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      ...+|.+++|+||+|||||||.+.|+..++
T Consensus         8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A            8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            456899999999999999999999988764

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.80  E-value=1.3e-05  Score=71.30  Aligned_cols=40  Identities=23%  Similarity=0.431  Sum_probs=32.4

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhcC-----------cCCCceeEEecC
Q 026376           51 GIDLDSRIAMVGPNGIGKSTILKLIAGE-----------LQPSSGTVFRSA   90 (239)
Q Consensus        51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl-----------~~p~~G~i~~~~   90 (239)
                      .+..|..++|+|+||+|||||++.|+|.           ..|..|.+.+.+
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~   68 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD   68 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence            4567889999999999999999999998           667788876543

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.80  E-value=5.6e-06  Score=75.93  Aligned_cols=56  Identities=23%  Similarity=0.379  Sum_probs=43.2

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEec
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRS   89 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~   89 (239)
                      .+++++...|. ...+++++++++.+|  +.|+||||+|||||+++|++...  .+.+.++
T Consensus        41 ~~l~~lv~~l~-~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~   96 (499)
T 2dhr_A           41 EELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS   96 (499)
T ss_dssp             HHHHHHHHHHH-CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred             HHHHHHHHHhh-chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEe
Confidence            34555555553 345788999999999  99999999999999999999864  4555543

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.78  E-value=1.9e-05  Score=71.06  Aligned_cols=35  Identities=31%  Similarity=0.602  Sum_probs=29.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcC------------CCceeEEecCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQ------------PSSGTVFRSAK   91 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~------------p~~G~i~~~~~   91 (239)
                      .++|+|+||||||||++.|+|...            +.+|.+.+++.
T Consensus       182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~  228 (439)
T 1mky_A          182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR  228 (439)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE
Confidence            799999999999999999999854            56677776654

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.77  E-value=9.1e-07  Score=76.86  Aligned_cols=51  Identities=20%  Similarity=0.261  Sum_probs=40.9

Q ss_pred             eeEEEcCCCCceeeeeeEEEeCCCE--EEEECCCCCcHHHHHHHHhcCcCCCce
Q 026376           33 DASFGYPGGPILFKNLNFGIDLDSR--IAMVGPNGIGKSTILKLIAGELQPSSG   84 (239)
Q Consensus        33 ~l~~~y~~~~~~l~~isl~i~~Ge~--~~iiG~NGsGKSTLl~~l~Gl~~p~~G   84 (239)
                      +++..| +...+++.++..++.|++  +.+.||+|+||||+++++++.+.+..+
T Consensus        23 ~~~~~~-g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~   75 (340)
T 1sxj_C           23 TLDEVY-GQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY   75 (340)
T ss_dssp             SGGGCC-SCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred             cHHHhc-CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence            333345 344578899999999998  999999999999999999998765443

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.74  E-value=2e-05  Score=60.72  Aligned_cols=24  Identities=42%  Similarity=0.697  Sum_probs=21.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      .++|+|++|+|||||++.++|...
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~~~~   28 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTGENV   28 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCe
Confidence            689999999999999999999654

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.74  E-value=1.6e-05  Score=62.39  Aligned_cols=27  Identities=26%  Similarity=0.511  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQPSS   83 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~p~~   83 (239)
                      .++|+|++|+|||||++.++|...+..
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~~~~~~   30 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKTKKSDL   30 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC-----
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCccC
Confidence            589999999999999999999754433

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.70  E-value=3.9e-06  Score=73.55  Aligned_cols=38  Identities=29%  Similarity=0.409  Sum_probs=33.7

Q ss_pred             ceeeeeeEEEeCCCE--EEEECCCCCcHHHHHHHHhcCcC
Q 026376           43 ILFKNLNFGIDLDSR--IAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        43 ~~l~~isl~i~~Ge~--~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      .+++.+++.+++|++  ++|+|++||||||+.++|++.+.
T Consensus        10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            367888899999999  99999999999999999998643

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.69  E-value=0.00024  Score=56.94  Aligned_cols=42  Identities=21%  Similarity=0.246  Sum_probs=31.4

Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHH
Q 026376          164 KKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHL  206 (239)
Q Consensus       164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~  206 (239)
                      .+|.+|++||.-. +|......+.+.+.+.  +..+|++|++...
T Consensus       125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~  168 (250)
T 1njg_A          125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQK  168 (250)
T ss_dssp             SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred             CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence            4578999999755 7888888888888654  2368888887653

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=97.65  E-value=4.5e-05  Score=65.53  Aligned_cols=29  Identities=28%  Similarity=0.419  Sum_probs=24.4

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcCCC
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGELQPS   82 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~   82 (239)
                      .+..+.|.||+|+|||||++.|+......
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~   64 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR   64 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence            34679999999999999999999876543

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=97.65  E-value=0.00018  Score=64.84  Aligned_cols=129  Identities=18%  Similarity=0.186  Sum_probs=73.7

Q ss_pred             ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCC
Q 026376           43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGV  122 (239)
Q Consensus        43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~  122 (239)
                      .-|+.+.--+.+|+++.|.|++|+|||||...++.......|.       .+.|+.-+        .... .+.      
T Consensus       188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~-------~vl~~slE--------~~~~-~l~------  245 (444)
T 2q6t_A          188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGV-------GVGIYSLE--------MPAA-QLT------  245 (444)
T ss_dssp             HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCC-------CEEEEESS--------SCHH-HHH------
T ss_pred             HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCC-------eEEEEECC--------CCHH-HHH------
Confidence            3456665558999999999999999999998887654322221       12332211        1111 110      


Q ss_pred             cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHh-hcCCEEEEEe
Q 026376          123 PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV-LFQGGILMVS  201 (239)
Q Consensus       123 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~-~~~~tii~vs  201 (239)
                        .++..  ...++.....  .-+.||..+.+|+.-|...+.+.++++.|+|.  ++.......++.+. +.+..+|+|-
T Consensus       246 --~R~~~--~~~~i~~~~l--~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~--~s~~~l~~~~~~l~~~~~~~lIvID  317 (444)
T 2q6t_A          246 --LRMMC--SEARIDMNRV--RLGQLTDRDFSRLVDVASRLSEAPIYIDDTPD--LTLMEVRARARRLVSQNQVGLIIID  317 (444)
T ss_dssp             --HHHHH--HHTTCCTTTC--CGGGCCHHHHHHHHHHHHHHHTSCEEEECCTT--CBHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred             --HHHHH--HHcCCCHHHH--hCCCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHHHHHHHHHHHHHcCCCEEEEc
Confidence              01111  1233321111  12468899999988887777778888888764  44544444444443 3455566664

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.62  E-value=2.5e-05  Score=62.42  Aligned_cols=25  Identities=32%  Similarity=0.449  Sum_probs=22.7

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           55 DSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        55 Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      ..+++|+|++||||||+.+.|++.+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999998865

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.62  E-value=0.00014  Score=60.94  Aligned_cols=28  Identities=36%  Similarity=0.559  Sum_probs=24.4

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           52 IDLDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        52 i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      +.++.-+.|.||.|+|||||++.++...
T Consensus        48 ~~~~~~~ll~G~~GtGKT~la~~la~~~   75 (285)
T 3h4m_A           48 IEPPKGILLYGPPGTGKTLLAKAVATET   75 (285)
T ss_dssp             CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            4566779999999999999999998864

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.58  E-value=0.00013  Score=63.37  Aligned_cols=28  Identities=25%  Similarity=0.482  Sum_probs=24.4

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      ..+..+.|.||.|+|||||++.++....
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~   69 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRLE   69 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence            4567899999999999999999987654

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.58  E-value=3.7e-05  Score=60.06  Aligned_cols=22  Identities=45%  Similarity=0.828  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|++|+|||||++.++|.
T Consensus         9 ~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            9 EIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999985

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.58  E-value=2.9e-05  Score=60.96  Aligned_cols=25  Identities=32%  Similarity=0.570  Sum_probs=22.1

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhc
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      .+|.+++|+|++||||||+.+.|+.
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3577899999999999999999984

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.58  E-value=3.7e-05  Score=63.18  Aligned_cols=27  Identities=41%  Similarity=0.512  Sum_probs=23.8

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhcC
Q 026376           52 IDLDSRIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        52 i~~Ge~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      =.+|.+++|+|++||||||+.+.|++.
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~~   39 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAKD   39 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            457889999999999999999999863

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.56  E-value=2.3e-05  Score=61.90  Aligned_cols=27  Identities=30%  Similarity=0.388  Sum_probs=23.8

Q ss_pred             CEEEEECCCCCcHHHHHHHHhcCcCCC
Q 026376           56 SRIAMVGPNGIGKSTILKLIAGELQPS   82 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~Gl~~p~   82 (239)
                      .+++|+|++|||||||++.|.+.+++.
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~   33 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALCAR   33 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence            589999999999999999999876543

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.51  E-value=2.1e-05  Score=65.07  Aligned_cols=24  Identities=33%  Similarity=0.522  Sum_probs=21.3

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhcC
Q 026376           55 DSRIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        55 Ge~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .-+++|.||+||||||+.+.|+..
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~   32 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARA   32 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            358999999999999999999843

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.51  E-value=3.4e-05  Score=64.04  Aligned_cols=35  Identities=43%  Similarity=0.628  Sum_probs=25.2

Q ss_pred             eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376           44 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        44 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      .++++++.+..|  +.|.||+|+|||||+++|++...
T Consensus        36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~   70 (257)
T 1lv7_A           36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK   70 (257)
T ss_dssp             GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence            345556666655  89999999999999999998763

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=97.48  E-value=7e-05  Score=67.70  Aligned_cols=57  Identities=11%  Similarity=-0.014  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHH
Q 026376          151 GQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLI  207 (239)
Q Consensus       151 Gqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~  207 (239)
                      .+.+....+...+.+++++|+......-......++.+.+++.+..+|++.+-.+..
T Consensus        88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~  144 (456)
T 4dcu_A           88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT  144 (456)
T ss_dssp             CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred             HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence            467777778888888888888766554333344667888877777777777655543

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=97.46  E-value=0.00058  Score=61.62  Aligned_cols=34  Identities=12%  Similarity=0.227  Sum_probs=27.2

Q ss_pred             eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q 026376           44 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        44 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      -|+.+.--+.+|+++.|.|+.|+|||||.--++.
T Consensus       186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~  219 (444)
T 3bgw_A          186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK  219 (444)
T ss_dssp             HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred             HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence            3454443588999999999999999999876654

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.45  E-value=6.9e-05  Score=57.75  Aligned_cols=23  Identities=35%  Similarity=0.403  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      +++|+|++||||||+.+.|+..+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998654

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.42  E-value=9.5e-05  Score=57.51  Aligned_cols=26  Identities=27%  Similarity=0.388  Sum_probs=23.2

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376           55 DSRIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        55 Ge~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      |.++.|+|++||||||+.+.|+..+.
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            57899999999999999999987653

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.38  E-value=0.002  Score=56.60  Aligned_cols=28  Identities=29%  Similarity=0.423  Sum_probs=24.0

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 026376           51 GIDLDSRIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      -+.+|+++.|.|+.|+|||||...++-.
T Consensus        70 Gl~~G~li~I~G~pGsGKTtlal~la~~   97 (366)
T 1xp8_A           70 GIPRGRITEIYGPESGGKTTLALAIVAQ   97 (366)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence            3689999999999999999998766543

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=97.35  E-value=7.4e-05  Score=66.06  Aligned_cols=35  Identities=20%  Similarity=0.181  Sum_probs=30.3

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEe
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFR   88 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~   88 (239)
                      .+..++|+|++|||||||++.|++...+..+.|.+
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~   68 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVII   68 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEE
Confidence            56789999999999999999999987777777754

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.35  E-value=0.00012  Score=57.34  Aligned_cols=26  Identities=23%  Similarity=0.417  Sum_probs=22.3

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      +|-+++|.|+.||||||+.+.|+-.+
T Consensus         2 ~~~~I~i~G~~GsGKsT~~~~L~~~l   27 (192)
T 1kht_A            2 KNKVVVVTGVPGVGSTTSSQLAMDNL   27 (192)
T ss_dssp             -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            36789999999999999999998644

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.34  E-value=3.5e-05  Score=64.12  Aligned_cols=30  Identities=30%  Similarity=0.402  Sum_probs=26.7

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376           51 GIDLDSRIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      ...++.++.|+|++||||||+.+.|+..+.
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~   57 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ   57 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            566788999999999999999999998764

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.30  E-value=0.00011  Score=59.25  Aligned_cols=23  Identities=35%  Similarity=0.439  Sum_probs=21.3

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhc
Q 026376           55 DSRIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        55 Ge~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      +-+++|.|++||||||+.+.|+.
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999987

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.29  E-value=0.00014  Score=55.88  Aligned_cols=19  Identities=42%  Similarity=0.581  Sum_probs=18.3

Q ss_pred             EEEEECCCCCcHHHHHHHH
Q 026376           57 RIAMVGPNGIGKSTILKLI   75 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l   75 (239)
                      +++|.|+.||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            6899999999999999999

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.28  E-value=0.00012  Score=60.89  Aligned_cols=23  Identities=30%  Similarity=0.339  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      +++|+||+|||||||.+.|++..
T Consensus         3 li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhcC
Confidence            68999999999999999998754

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.28  E-value=0.00014  Score=57.51  Aligned_cols=23  Identities=48%  Similarity=0.644  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      +++|.|+.||||||+.+.|+..+
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l   24 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKL   24 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHhc
Confidence            68999999999999999999854

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.28  E-value=3.1e-05  Score=62.11  Aligned_cols=26  Identities=31%  Similarity=0.626  Sum_probs=23.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQPS   82 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~p~   82 (239)
                      +++|.|++||||||+++.|+..+.+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~   27 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAA   27 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence            68999999999999999999877543

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.27  E-value=0.00011  Score=57.73  Aligned_cols=27  Identities=26%  Similarity=0.362  Sum_probs=23.2

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++.++.|+|++||||||+.+.|+..+
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            356789999999999999999997643

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.27  E-value=9.5e-05  Score=57.81  Aligned_cols=26  Identities=35%  Similarity=0.491  Sum_probs=22.8

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcC
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++.++.|+|++||||||+.+.|+-.
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~~   34 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELASK   34 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence            46778999999999999999999843

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.27  E-value=0.00013  Score=56.82  Aligned_cols=23  Identities=39%  Similarity=0.622  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|++||||||+.+.|+..+
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58999999999999999998754

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=97.26  E-value=0.00013  Score=61.24  Aligned_cols=43  Identities=16%  Similarity=0.192  Sum_probs=30.5

Q ss_pred             CCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEE
Q 026376          174 PSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWV  216 (239)
Q Consensus       174 Pt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~  216 (239)
                      |||+.+..+...+.+.+.+.    ..+..+.+|..+.+...++++..
T Consensus       144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~  190 (271)
T 3k53_A          144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHISE  190 (271)
T ss_dssp             ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHHHH
Confidence            89999988887777766432    23456677887777777777644

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.26  E-value=0.00014  Score=57.99  Aligned_cols=23  Identities=48%  Similarity=0.765  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .+.|+||+|||||||++.|....
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            37899999999999999987543

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.26  E-value=0.0044  Score=55.82  Aligned_cols=28  Identities=32%  Similarity=0.396  Sum_probs=24.7

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcCC
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGELQP   81 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p   81 (239)
                      ++.+++++|++||||||++..|+..+..
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~  126 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQK  126 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence            4679999999999999999999987664

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=97.22  E-value=0.00028  Score=62.02  Aligned_cols=36  Identities=25%  Similarity=0.487  Sum_probs=28.6

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhcC-----------cCCCceeEEecC
Q 026376           55 DSRIAMVGPNGIGKSTILKLIAGE-----------LQPSSGTVFRSA   90 (239)
Q Consensus        55 Ge~~~iiG~NGsGKSTLl~~l~Gl-----------~~p~~G~i~~~~   90 (239)
                      |-.++|+|.+|+|||||++.|+|-           +.|..|.+.+.+
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~   48 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD   48 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence            457899999999999999999983           356667766543

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.21  E-value=0.00022  Score=56.56  Aligned_cols=26  Identities=23%  Similarity=0.203  Sum_probs=24.0

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      +|-+++|.|+.||||||+.+.|+..+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            67899999999999999999999866

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.20  E-value=0.00022  Score=55.84  Aligned_cols=26  Identities=23%  Similarity=0.263  Sum_probs=22.1

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .+..++|+|+.||||||+.+.|+..+
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            36789999999999999999997643

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.20  E-value=0.0002  Score=55.49  Aligned_cols=22  Identities=32%  Similarity=0.342  Sum_probs=20.2

Q ss_pred             CEEEEECCCCCcHHHHHHHHhc
Q 026376           56 SRIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      .++.|.|++||||||+.+.|+.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            3689999999999999999986

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.18  E-value=0.00048  Score=56.46  Aligned_cols=52  Identities=13%  Similarity=0.060  Sum_probs=37.6

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecC----------HHHHhhhcCeEEEEe
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHD----------EHLISGSVEELWVVS  218 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd----------~~~~~~~~d~i~~l~  218 (239)
                      +++++++||--. |+....+ ++..+.+.+.+||++-|+          ...+..+||+|..|+
T Consensus        89 ~~dvViIDEaQ~-l~~~~ve-~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~  150 (223)
T 2b8t_A           89 ETKVIGIDEVQF-FDDRICE-VANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT  150 (223)
T ss_dssp             TCCEEEECSGGG-SCTHHHH-HHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred             CCCEEEEecCcc-CcHHHHH-HHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence            589999999964 7765433 445565667799999993          344555899998864

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.13  E-value=0.00074  Score=61.52  Aligned_cols=56  Identities=23%  Similarity=0.169  Sum_probs=48.0

Q ss_pred             EEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecC
Q 026376           31 FSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSA   90 (239)
Q Consensus        31 ~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~   90 (239)
                      +.+++...   ..+|+++||+|++ ++++|+|||||||||||++|+|+++|++|+|.+++
T Consensus         9 l~~l~~~~---~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g   64 (483)
T 3euj_A            9 FRSLTLIN---WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRN   64 (483)
T ss_dssp             EEEEEEEE---ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCC
T ss_pred             eeEEEEec---cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECC
Confidence            44554432   2478999999999 99999999999999999999999999999998654

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.12  E-value=0.00016  Score=61.63  Aligned_cols=30  Identities=37%  Similarity=0.635  Sum_probs=26.9

Q ss_pred             EEEeCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           50 FGIDLDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        50 l~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      +.+.++..+.|.||+|+|||||.++|++..
T Consensus        44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~   73 (301)
T 3cf0_A           44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC   73 (301)
T ss_dssp             HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence            456788999999999999999999999865

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.11  E-value=0.00026  Score=56.34  Aligned_cols=28  Identities=29%  Similarity=0.321  Sum_probs=24.2

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcCC
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGELQP   81 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p   81 (239)
                      +|-+++|.|+.||||||+.+.|+..+..
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            4678999999999999999999876543

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.11  E-value=0.00025  Score=55.78  Aligned_cols=27  Identities=30%  Similarity=0.313  Sum_probs=23.5

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++-+++|+|+.||||||+.+.|+..+
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            467799999999999999999998543

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=97.11  E-value=0.0029  Score=54.65  Aligned_cols=120  Identities=12%  Similarity=0.179  Sum_probs=64.0

Q ss_pred             EeCCCEEEEECCCCCcHHHHH-HHHhcCcCCC-ceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHH
Q 026376           52 IDLDSRIAMVGPNGIGKSTIL-KLIAGELQPS-SGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA  129 (239)
Q Consensus        52 i~~Ge~~~iiG~NGsGKSTLl-~~l~Gl~~p~-~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (239)
                      +.+| ++-|.||.|||||||. .+++...+.. .|.        ..|+.-+.  .+    ..             .    
T Consensus        26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~--------vlyId~E~--s~----~~-------------~----   73 (333)
T 3io5_A           26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAV--------CLFYDSEF--GI----TP-------------A----   73 (333)
T ss_dssp             BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCE--------EEEEESSC--CC----CH-------------H----
T ss_pred             CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCce--------EEEEeccc--hh----hH-------------H----
Confidence            5688 9999999999999994 5555443311 222        23332211  01    01             0    


Q ss_pred             HHHhcCCCcccccCCCCCCChHHHHHHHHHHHh--c--cCCCEEEEeCCCCCCC-H--------------HHHHHH----
Q 026376          130 HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKIT--F--KKPHIILLDEPSNHLD-L--------------DAVEAL----  186 (239)
Q Consensus       130 ~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral--~--~~p~llllDEPt~~LD-~--------------~~~~~l----  186 (239)
                      .++++|+..+  +-.+..-.-+|++.+.++.++  +  .+|+++++|--++-.- .              ...+.+    
T Consensus        74 ra~~lGvd~d--~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~L  151 (333)
T 3io5_A           74 YLRSMGVDPE--RVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLF  151 (333)
T ss_dssp             HHHHTTCCGG--GEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHH
T ss_pred             HHHHhCCCHH--HeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHH
Confidence            1233444311  011111124566667777776  4  3699999998877641 0              011111    


Q ss_pred             ---HHHHhhcCCEEEEEecCHH
Q 026376          187 ---IQGLVLFQGGILMVSHDEH  205 (239)
Q Consensus       187 ---~~~l~~~~~tii~vsHd~~  205 (239)
                         ...+++.+.++|++-|-..
T Consensus       152 rkL~~~ak~~~i~vi~tNQV~k  173 (333)
T 3io5_A          152 RIVTPYFSTKNIPCIAINHTYE  173 (333)
T ss_dssp             HHHHHHHHHTTCEEEEEEEC--
T ss_pred             HHHHHHHHHhCCEEEEECCeee
Confidence               2234556779999998765

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.11  E-value=0.00027  Score=56.37  Aligned_cols=26  Identities=31%  Similarity=0.258  Sum_probs=23.3

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcC
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .+|-+++|.|+.||||||+.+.|+-.
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~   33 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEY   33 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            46889999999999999999999864

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.10  E-value=0.00022  Score=60.58  Aligned_cols=27  Identities=22%  Similarity=0.321  Sum_probs=23.4

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      ..+.++.|.||+||||||+.+.|+..+
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            456789999999999999999998644

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.10  E-value=0.00024  Score=56.29  Aligned_cols=23  Identities=35%  Similarity=0.419  Sum_probs=21.3

Q ss_pred             CEEEEECCCCCcHHHHHHHHhcC
Q 026376           56 SRIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .+++|+|++||||||+.+.|+..
T Consensus         9 ~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            9 IIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHC
Confidence            47999999999999999999975

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=97.09  E-value=0.00028  Score=59.49  Aligned_cols=23  Identities=35%  Similarity=0.683  Sum_probs=21.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|++|||||||++.++|..
T Consensus         5 kI~lvG~~nvGKSTL~n~L~g~~   27 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLFNLITGHN   27 (272)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999964

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.08  E-value=0.0003  Score=56.24  Aligned_cols=28  Identities=25%  Similarity=0.277  Sum_probs=24.0

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           52 IDLDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        52 i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|-+++|.|+.||||||+.+.|+-.+
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l   33 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQSRKLVEAL   33 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4568899999999999999999998543

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=97.08  E-value=0.00028  Score=55.25  Aligned_cols=24  Identities=29%  Similarity=0.641  Sum_probs=21.8

Q ss_pred             CEEEEECCCCCcHHHHHHHHhcCc
Q 026376           56 SRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      =.++|+|+.|||||||++.+++..
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            479999999999999999999864

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.08  E-value=0.00016  Score=56.76  Aligned_cols=26  Identities=19%  Similarity=0.216  Sum_probs=22.8

Q ss_pred             CEEEEECCCCCcHHHHHHHHhcCcCC
Q 026376           56 SRIAMVGPNGIGKSTILKLIAGELQP   81 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~Gl~~p   81 (239)
                      .+++|+|++|||||||+..|+..++.
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~~   30 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAVR   30 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence            37899999999999999999887653

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.06  E-value=0.0003  Score=55.14  Aligned_cols=24  Identities=25%  Similarity=0.286  Sum_probs=21.2

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhcC
Q 026376           55 DSRIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        55 Ge~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      +.+++|.|+.||||||+.+.|+-.
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~   26 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEK   26 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            568999999999999999998753

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=97.06  E-value=0.00022  Score=58.42  Aligned_cols=63  Identities=14%  Similarity=0.196  Sum_probs=37.9

Q ss_pred             CChHHHHHHHHHHHhccCCCEEEEeCCCC-CCCHHHHHHHHHHHhh-cC--CEEEEE-ecCHHHHhhhcC
Q 026376          148 LSGGQKSRVAFAKITFKKPHIILLDEPSN-HLDLDAVEALIQGLVL-FQ--GGILMV-SHDEHLISGSVE  212 (239)
Q Consensus       148 LSgGqkqrv~laral~~~p~llllDEPt~-~LD~~~~~~l~~~l~~-~~--~tii~v-sHd~~~~~~~~d  212 (239)
                      .+.|...+..  ...+.+.+++++||.-. ++|.......++.+.. ..  .+++++ |.+.+.+.++.+
T Consensus       161 ~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~  228 (235)
T 3llm_A          161 CTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFF  228 (235)
T ss_dssp             EEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred             ECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence            3456666653  33688999999999976 5777665444444432 22  244444 666655555443

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.05  E-value=0.0003  Score=55.91  Aligned_cols=23  Identities=30%  Similarity=0.589  Sum_probs=21.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      +++|.|++||||||+.+.|+..+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            79999999999999999998854

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.04  E-value=0.00022  Score=60.36  Aligned_cols=31  Identities=26%  Similarity=0.559  Sum_probs=27.1

Q ss_pred             CEEEEECCCCCcHHHHHHHHhcCcCCCceeE
Q 026376           56 SRIAMVGPNGIGKSTILKLIAGELQPSSGTV   86 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i   86 (239)
                      ..+.|.||+|+||||+.++|++...+..+.+
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~   78 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM   78 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence            5799999999999999999999887766644

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=97.04  E-value=0.0071  Score=55.07  Aligned_cols=34  Identities=18%  Similarity=0.190  Sum_probs=26.5

Q ss_pred             eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 026376           45 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        45 l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      |+.+---+.+|+++.|.|+.|+|||||.--++--
T Consensus       232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~  265 (503)
T 1q57_A          232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQ  265 (503)
T ss_dssp             HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHH
Confidence            3443324889999999999999999998666543

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.04  E-value=0.00031  Score=54.96  Aligned_cols=24  Identities=33%  Similarity=0.416  Sum_probs=21.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      +++|.|+.||||||+.+.|+-.+.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999987553

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.03  E-value=0.0048  Score=63.84  Aligned_cols=33  Identities=18%  Similarity=0.356  Sum_probs=28.1

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhcCcCCCce
Q 026376           52 IDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG   84 (239)
Q Consensus        52 i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G   84 (239)
                      +.+|+.+.|.||+|+|||||+..++.......|
T Consensus       729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~  761 (1706)
T 3cmw_A          729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK  761 (1706)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred             cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCC
Confidence            899999999999999999999988876544333

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=97.02  E-value=0.00029  Score=54.99  Aligned_cols=22  Identities=45%  Similarity=0.752  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|++|+|||||++.+++-
T Consensus        18 ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           18 RILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999986

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=97.01  E-value=0.00041  Score=53.06  Aligned_cols=23  Identities=35%  Similarity=0.801  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCccHHHHHHHHhcCC
Confidence            58999999999999999998864

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.01  E-value=0.00028  Score=55.00  Aligned_cols=26  Identities=27%  Similarity=0.410  Sum_probs=18.2

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      ++.++.|.|+.||||||+.+.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            56789999999999999999997543

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=97.00  E-value=0.00032  Score=53.27  Aligned_cols=24  Identities=25%  Similarity=0.679  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      .++|+|+.|+|||||++.++|...
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~~~   27 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGVED   27 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC--
T ss_pred             EEEEECCCCCCHHHHHHHHcCccc
Confidence            589999999999999999988543

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.99  E-value=0.00038  Score=52.80  Aligned_cols=23  Identities=22%  Similarity=0.563  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~~   29 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKGI   29 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999998753

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.99  E-value=0.00044  Score=52.66  Aligned_cols=24  Identities=33%  Similarity=0.617  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      .++|+|+.|+|||||++.+++...
T Consensus         4 ki~ivG~~~~GKSsli~~l~~~~~   27 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGGLQG   27 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhccC
Confidence            478999999999999999987543

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.99  E-value=0.00045  Score=52.52  Aligned_cols=22  Identities=32%  Similarity=0.635  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999874

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.98  E-value=0.00041  Score=52.30  Aligned_cols=23  Identities=22%  Similarity=0.530  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++++|+.|+|||||++.+.+-.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999998754

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.98  E-value=0.00084  Score=52.55  Aligned_cols=28  Identities=25%  Similarity=0.456  Sum_probs=21.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhc-C----cCCCce
Q 026376           57 RIAMVGPNGIGKSTILKLIAG-E----LQPSSG   84 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~G-l----~~p~~G   84 (239)
                      .++|+|+.|+|||||++.+++ .    ..|+.|
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~   54 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG   54 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence            589999999999999975554 3    456655

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.95  E-value=0.00043  Score=53.14  Aligned_cols=23  Identities=30%  Similarity=0.660  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~~~   33 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFADNT   33 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998753

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.95  E-value=0.00054  Score=55.32  Aligned_cols=26  Identities=27%  Similarity=0.493  Sum_probs=22.9

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      +|-+++|+|+.||||||+.+.|+..+
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            56789999999999999999998644

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.94  E-value=0.00047  Score=52.05  Aligned_cols=22  Identities=23%  Similarity=0.552  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999998764

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.94  E-value=0.00039  Score=52.33  Aligned_cols=23  Identities=26%  Similarity=0.551  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++++|+.|+|||||++.+.+-.
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~~   27 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            48999999999999999998753

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.93  E-value=0.00063  Score=52.21  Aligned_cols=26  Identities=23%  Similarity=0.316  Sum_probs=22.5

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      +.-.++|+|+.|+|||||++.+.+-.
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~~   32 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHSK   32 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            44579999999999999999998743

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.93  E-value=0.00048  Score=52.34  Aligned_cols=23  Identities=26%  Similarity=0.616  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            48999999999999999998864

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.93  E-value=0.00047  Score=52.10  Aligned_cols=23  Identities=30%  Similarity=0.528  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++++|+.|+|||||++.+.+-.
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~~   28 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYDE   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            58999999999999999998753

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.92  E-value=0.00048  Score=52.40  Aligned_cols=22  Identities=14%  Similarity=0.472  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.+.+-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999865

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.91  E-value=0.00051  Score=55.79  Aligned_cols=27  Identities=26%  Similarity=0.345  Sum_probs=22.2

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++-+++|+|+.||||||+.+.|+..+
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            356789999999999999999998543

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.90  E-value=0.00051  Score=52.09  Aligned_cols=23  Identities=22%  Similarity=0.479  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++++|+.|+|||||++.+.+-.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            48999999999999999998754

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.90  E-value=0.00051  Score=52.77  Aligned_cols=23  Identities=17%  Similarity=0.624  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|||||||++.+.+-.
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            58999999999999999988754

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.90  E-value=0.00045  Score=54.05  Aligned_cols=24  Identities=25%  Similarity=0.513  Sum_probs=21.1

Q ss_pred             CEEEEECCCCCcHHHHHHHHhcCc
Q 026376           56 SRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      =.++|+|+.|+|||||++.+.+-.
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999998853

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.89  E-value=0.00052  Score=51.96  Aligned_cols=22  Identities=23%  Similarity=0.549  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999999864

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.89  E-value=0.00054  Score=54.99  Aligned_cols=22  Identities=32%  Similarity=0.468  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      +++|+|+.||||||+.+.|+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999654

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.89  E-value=0.00054  Score=54.00  Aligned_cols=28  Identities=21%  Similarity=0.273  Sum_probs=24.1

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           52 IDLDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        52 i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      ++.+-+++|+|+.||||||+.+.|+..+
T Consensus         9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A            9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4567799999999999999999998644

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.89  E-value=0.00046  Score=53.75  Aligned_cols=23  Identities=30%  Similarity=0.582  Sum_probs=21.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCc
Confidence            69999999999999999998864

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.88  E-value=0.00055  Score=52.51  Aligned_cols=23  Identities=22%  Similarity=0.586  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~~   31 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTNK   31 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            48999999999999999998653

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.87  E-value=0.00032  Score=54.25  Aligned_cols=23  Identities=39%  Similarity=0.585  Sum_probs=20.5

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhc
Q 026376           55 DSRIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        55 Ge~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      .=.++|+|++|+|||||++.+.+
T Consensus        18 ~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           18 ELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            34799999999999999999975

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.87  E-value=0.00048  Score=52.30  Aligned_cols=23  Identities=30%  Similarity=0.627  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVEDK   27 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            47999999999999999998754

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.86  E-value=0.00054  Score=52.81  Aligned_cols=24  Identities=38%  Similarity=0.520  Sum_probs=20.9

Q ss_pred             CEEEEECCCCCcHHHHHHHHhcCc
Q 026376           56 SRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .+++|+|+.||||||+.+.|+..+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999999999999997643

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.86  E-value=0.0006  Score=53.37  Aligned_cols=23  Identities=39%  Similarity=0.404  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      +++|.|+.||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999998654

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.86  E-value=0.00051  Score=53.35  Aligned_cols=23  Identities=30%  Similarity=0.576  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCcC
Confidence            47899999999999999999854

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.86  E-value=0.00058  Score=53.19  Aligned_cols=24  Identities=38%  Similarity=0.506  Sum_probs=21.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      .++|+|+.|+|||||++.+.|...
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcc
Confidence            579999999999999999998654

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.85  E-value=0.00052  Score=52.68  Aligned_cols=22  Identities=27%  Similarity=0.539  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.+.+-
T Consensus        11 ~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999875

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.84  E-value=0.00068  Score=52.03  Aligned_cols=23  Identities=39%  Similarity=0.488  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      +++|.|+.||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999997643

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.84  E-value=0.00059  Score=54.15  Aligned_cols=27  Identities=33%  Similarity=0.521  Sum_probs=23.6

Q ss_pred             CEEEEECCCCCcHHHHHHHHhcCcCCC
Q 026376           56 SRIAMVGPNGIGKSTILKLIAGELQPS   82 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~Gl~~p~   82 (239)
                      ..+.|.||+|+|||||+++|+......
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~   81 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKR   81 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            689999999999999999999876543

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.84  E-value=0.00078  Score=53.51  Aligned_cols=26  Identities=35%  Similarity=0.547  Sum_probs=22.3

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .+-+++|+|+.||||||+.+.|+..+
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999997643

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.83  E-value=0.00062  Score=51.58  Aligned_cols=22  Identities=18%  Similarity=0.513  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.+.+-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999999863

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.83  E-value=0.00062  Score=53.30  Aligned_cols=23  Identities=22%  Similarity=0.634  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~~   49 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRNE   49 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            48999999999999999998743

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.83  E-value=0.00063  Score=52.68  Aligned_cols=23  Identities=26%  Similarity=0.577  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            58999999999999999998753

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.83  E-value=0.00072  Score=51.89  Aligned_cols=23  Identities=26%  Similarity=0.476  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~~   30 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQET   30 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhCc
Confidence            48999999999999999998754

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.83  E-value=0.00066  Score=54.53  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.||||||+.+.|+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999754

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.82  E-value=0.00065  Score=51.70  Aligned_cols=22  Identities=41%  Similarity=0.608  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.+.+-
T Consensus         9 ~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            9 RILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999763

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.82  E-value=0.00065  Score=53.02  Aligned_cols=23  Identities=22%  Similarity=0.523  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         9 ki~v~G~~~~GKSsli~~l~~~~   31 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTKDT   31 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            58999999999999999999864

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.81  E-value=0.00058  Score=55.22  Aligned_cols=26  Identities=23%  Similarity=0.293  Sum_probs=22.3

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .+-+++|+|+.||||||+.+.|+-.+
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l   29 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKY   29 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45679999999999999999998644

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.80  E-value=0.00066  Score=52.67  Aligned_cols=22  Identities=23%  Similarity=0.539  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.+.+-
T Consensus        13 ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999874

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.80  E-value=0.00082  Score=54.15  Aligned_cols=27  Identities=15%  Similarity=0.236  Sum_probs=24.2

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      .+..+.|.||+|+|||||++.++....
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~   77 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARAN   77 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999999987654

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.80  E-value=0.0007  Score=51.24  Aligned_cols=21  Identities=48%  Similarity=0.588  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q 026376           57 RIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      .++|+|+.|+|||||++.+.+
T Consensus         2 ki~~~G~~~~GKssl~~~l~~   22 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKL   22 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            479999999999999999976

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.79  E-value=0.0007  Score=57.85  Aligned_cols=23  Identities=39%  Similarity=0.582  Sum_probs=21.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      +++|+|++|+|||||++.|.|..
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~~   31 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGVK   31 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            69999999999999999999853

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.79  E-value=0.00063  Score=56.73  Aligned_cols=23  Identities=17%  Similarity=0.401  Sum_probs=21.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|||||||++.|+|..
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~   25 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNAN   25 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999974

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.79  E-value=0.00056  Score=54.16  Aligned_cols=22  Identities=36%  Similarity=0.712  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.++|.
T Consensus        25 ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999999864

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=96.78  E-value=0.003  Score=50.39  Aligned_cols=52  Identities=15%  Similarity=0.164  Sum_probs=37.1

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCH----------HHHhhhcCeEEEEe
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDE----------HLISGSVEELWVVS  218 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~----------~~~~~~~d~i~~l~  218 (239)
                      +.+++++||--- +|++... .++.+...+..||+..+|.          ..+..+||.|..|+
T Consensus        81 ~~dvViIDEaqf-l~~~~v~-~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~  142 (191)
T 1xx6_A           81 DTEVIAIDEVQF-FDDEIVE-IVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ  142 (191)
T ss_dssp             TCSEEEECSGGG-SCTHHHH-HHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred             cCCEEEEECCCC-CCHHHHH-HHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence            579999999543 7766544 4555555577899998854          45556899997764

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.78  E-value=0.00066  Score=53.01  Aligned_cols=24  Identities=25%  Similarity=0.321  Sum_probs=21.1

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhcC
Q 026376           55 DSRIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        55 Ge~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      ..+++|+|+.||||||+.+.|+..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~   29 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999999754

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.78  E-value=0.00087  Score=51.59  Aligned_cols=23  Identities=22%  Similarity=0.403  Sum_probs=21.0

Q ss_pred             CEEEEECCCCCcHHHHHHHHhcC
Q 026376           56 SRIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      ++++|+|+.||||||+.+.|+..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~   30 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLA   30 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999999764

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.77  E-value=0.00072  Score=52.70  Aligned_cols=23  Identities=26%  Similarity=0.551  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++++|+.|+|||||++.+++-.
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~~   45 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQNH   45 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999998753

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.77  E-value=0.00071  Score=52.84  Aligned_cols=23  Identities=39%  Similarity=0.515  Sum_probs=20.5

Q ss_pred             CEEEEECCCCCcHHHHHHHHhcC
Q 026376           56 SRIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      -+++|+|+.||||||+.+.|+..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKA   25 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999764

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.77  E-value=0.00074  Score=51.71  Aligned_cols=23  Identities=26%  Similarity=0.543  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            48999999999999999998754

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.77  E-value=0.00073  Score=56.28  Aligned_cols=25  Identities=36%  Similarity=0.304  Sum_probs=22.1

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      ++.++.|.|++||||||+.+.|+..
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            4568999999999999999999864

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.76  E-value=0.00075  Score=52.07  Aligned_cols=23  Identities=30%  Similarity=0.528  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        20 ki~v~G~~~~GKSsli~~l~~~~   42 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMYDE   42 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Confidence            58999999999999999998743

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.76  E-value=0.00081  Score=53.38  Aligned_cols=24  Identities=29%  Similarity=0.351  Sum_probs=20.9

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhcC
Q 026376           55 DSRIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        55 Ge~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      ..+++|.|+.||||||+.+.|+-.
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~~   38 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVKD   38 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999999754

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.75  E-value=0.00077  Score=51.80  Aligned_cols=23  Identities=26%  Similarity=0.583  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            58999999999999999998754

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.74  E-value=0.00068  Score=51.89  Aligned_cols=22  Identities=14%  Similarity=0.525  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.+.+-
T Consensus        16 ~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.74  E-value=0.011  Score=61.32  Aligned_cols=27  Identities=19%  Similarity=0.433  Sum_probs=23.9

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhcC
Q 026376           52 IDLDSRIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        52 i~~Ge~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      +.+|.++.|.||.|+|||||.-.++..
T Consensus       380 l~~G~lilI~G~pGsGKTtLaLq~a~~  406 (1706)
T 3cmw_A          380 LPMGRIVEIYGPESSGKTTLTLQVIAA  406 (1706)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            789999999999999999998766554

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.73  E-value=0.0018  Score=55.77  Aligned_cols=45  Identities=13%  Similarity=0.186  Sum_probs=34.4

Q ss_pred             ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc----CcCCCceeEEe
Q 026376           43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG----ELQPSSGTVFR   88 (239)
Q Consensus        43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~G----l~~p~~G~i~~   88 (239)
                      ..++...+.+ .|.-++|+|++|+|||||...+.+    ++..+...|..
T Consensus       133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~  181 (314)
T 1ko7_A          133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIRE  181 (314)
T ss_dssp             EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEE
T ss_pred             eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEE
Confidence            4567777787 688899999999999999998887    44444444443

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=96.71  E-value=0.0007  Score=59.64  Aligned_cols=22  Identities=27%  Similarity=0.563  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|++|+|||||++.|++.
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4799999999999999999985

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.71  E-value=0.00088  Score=51.53  Aligned_cols=23  Identities=22%  Similarity=0.502  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~~   36 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKDQ   36 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999998753

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=96.71  E-value=0.00092  Score=55.74  Aligned_cols=23  Identities=22%  Similarity=0.612  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|||||||++.++|..
T Consensus         7 kI~lvG~~nvGKTsL~n~l~g~~   29 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLFNALTGTK   29 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999954

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.71  E-value=0.00092  Score=54.27  Aligned_cols=23  Identities=39%  Similarity=0.634  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      +++|.|+.||||||+.+.|+-.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999997543

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.70  E-value=0.00093  Score=51.86  Aligned_cols=26  Identities=42%  Similarity=0.599  Sum_probs=22.1

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      +.=.++|+|+.|+|||||++.+.+-.
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            33468999999999999999998754

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.70  E-value=0.00085  Score=53.63  Aligned_cols=23  Identities=30%  Similarity=0.663  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+++-.
T Consensus        14 ~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           14 SIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998865

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.70  E-value=0.00095  Score=53.32  Aligned_cols=23  Identities=30%  Similarity=0.523  Sum_probs=20.7

Q ss_pred             CEEEEECCCCCcHHHHHHHHhcC
Q 026376           56 SRIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      -+++|+|+.||||||+.+.|+..
T Consensus        13 ~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999999864

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.70  E-value=0.00087  Score=52.88  Aligned_cols=22  Identities=41%  Similarity=0.880  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|++|+|||||++.++|.
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999873

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=96.69  E-value=0.00092  Score=57.19  Aligned_cols=23  Identities=39%  Similarity=0.628  Sum_probs=21.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      +++|+|+.|+|||||++.|.|..
T Consensus        12 ~v~ivG~~nvGKSTLin~l~g~~   34 (308)
T 3iev_A           12 YVAIVGKPNVGKSTLLNNLLGTK   34 (308)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            89999999999999999999953

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.69  E-value=0.00091  Score=52.78  Aligned_cols=23  Identities=17%  Similarity=0.613  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999998754

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.68  E-value=0.00079  Score=52.10  Aligned_cols=23  Identities=26%  Similarity=0.499  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        12 ki~v~G~~~~GKSsli~~l~~~~   34 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIEKK   34 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998653

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.68  E-value=0.00094  Score=55.21  Aligned_cols=22  Identities=27%  Similarity=0.305  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      +++|.|+.||||||+.+.|+..
T Consensus        24 iI~I~G~~GSGKST~a~~L~~~   45 (252)
T 1uj2_A           24 LIGVSGGTASGKSSVCAKIVQL   45 (252)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999999774

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=96.68  E-value=0.00077  Score=56.53  Aligned_cols=23  Identities=30%  Similarity=0.495  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.|.|-.
T Consensus        10 ~I~vvG~~g~GKSTLin~L~~~~   32 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLFLTD   32 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHSSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999998754

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.68  E-value=0.0008  Score=52.34  Aligned_cols=22  Identities=32%  Similarity=0.646  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.+.+-
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5799999999999999999875

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.68  E-value=0.00092  Score=52.62  Aligned_cols=22  Identities=32%  Similarity=0.595  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.+.+-
T Consensus        16 ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999864

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.67  E-value=0.00094  Score=52.11  Aligned_cols=23  Identities=22%  Similarity=0.508  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+++-.
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            48999999999999999998754

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.66  E-value=0.0013  Score=50.80  Aligned_cols=22  Identities=27%  Similarity=0.545  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999864

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.65  E-value=0.00094  Score=55.24  Aligned_cols=23  Identities=39%  Similarity=0.495  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|||||||++.|.|-.
T Consensus        24 ~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           24 RIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999854

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=96.65  E-value=0.00093  Score=56.15  Aligned_cols=23  Identities=26%  Similarity=0.572  Sum_probs=21.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|..|||||||++.|+|..
T Consensus         5 ~I~lvG~~n~GKSTLin~l~g~~   27 (274)
T 3i8s_A            5 TIGLIGNPNSGKTTLFNQLTGSR   27 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999964

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.64  E-value=0.0013  Score=51.27  Aligned_cols=23  Identities=30%  Similarity=0.661  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            48999999999999999998754

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=96.64  E-value=0.001  Score=52.25  Aligned_cols=23  Identities=17%  Similarity=0.680  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~~~   50 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTDDT   50 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            48999999999999999998753

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.64  E-value=0.0009  Score=52.48  Aligned_cols=23  Identities=26%  Similarity=0.612  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        25 ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998753

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.63  E-value=0.001  Score=51.24  Aligned_cols=22  Identities=23%  Similarity=0.451  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.+.+-
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.63  E-value=0.0012  Score=52.11  Aligned_cols=23  Identities=26%  Similarity=0.521  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            48999999999999999998754

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.63  E-value=0.00092  Score=52.32  Aligned_cols=22  Identities=27%  Similarity=0.601  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.+.+-
T Consensus        10 ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A           10 RVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            5899999999999999999873

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=96.62  E-value=0.0035  Score=50.95  Aligned_cols=52  Identities=17%  Similarity=0.146  Sum_probs=39.2

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEec----------CHHHHhhhcCeEEEEe
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSH----------DEHLISGSVEELWVVS  218 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsH----------d~~~~~~~~d~i~~l~  218 (239)
                      +.+++++||--- +|++.. ++++.+...+..||+.-+          -...+..+||.|..|+
T Consensus       101 ~~dvViIDEaQF-~~~~~V-~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~  162 (214)
T 2j9r_A          101 EMDVIAIDEVQF-FDGDIV-EVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ  162 (214)
T ss_dssp             SCCEEEECCGGG-SCTTHH-HHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred             CCCEEEEECccc-CCHHHH-HHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence            589999999876 877766 455666666778999998          3445556899998874

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=96.62  E-value=0.00046  Score=56.70  Aligned_cols=25  Identities=16%  Similarity=0.179  Sum_probs=18.8

Q ss_pred             CCCE-EEEECCCCCcHHHHHHHHhcC
Q 026376           54 LDSR-IAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        54 ~Ge~-~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .|.. +.+.|+-|+||||++-.++..
T Consensus         4 ~g~l~I~~~~kgGvGKTt~a~~la~~   29 (228)
T 2r8r_A            4 RGRLKVFLGAAPGVGKTYAMLQAAHA   29 (228)
T ss_dssp             CCCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHH
Confidence            4564 788999999999996555443

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.62  E-value=0.00099  Score=54.71  Aligned_cols=28  Identities=32%  Similarity=0.429  Sum_probs=22.1

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      .+|-+++|.|+.||||||+.+.|+..+.
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5799999999999999999999987654

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=96.61  E-value=0.0011  Score=51.81  Aligned_cols=22  Identities=27%  Similarity=0.531  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.+++-
T Consensus        19 ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           19 QVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             EEEEECCTTSCHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999884

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.61  E-value=0.0011  Score=51.64  Aligned_cols=22  Identities=18%  Similarity=0.457  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.+.+-
T Consensus        22 ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999999864

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.61  E-value=0.0011  Score=51.83  Aligned_cols=23  Identities=26%  Similarity=0.554  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998753

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=96.60  E-value=0.0012  Score=55.39  Aligned_cols=30  Identities=37%  Similarity=0.599  Sum_probs=23.0

Q ss_pred             CEEEEECCCCCcHHHHHHHHhcCcCCCcee
Q 026376           56 SRIAMVGPNGIGKSTILKLIAGELQPSSGT   85 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~   85 (239)
                      -.++++|.+|+|||||++.|.|-.....|.
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~  129 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA  129 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence            489999999999999999999976544443

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.60  E-value=0.00096  Score=52.73  Aligned_cols=23  Identities=13%  Similarity=0.367  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        26 ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           26 KVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            68999999999999999998854

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=96.60  E-value=0.00082  Score=52.51  Aligned_cols=23  Identities=22%  Similarity=0.375  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           23 HVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             EEEEEECTTSSHHHHHHHTSCGG
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998865

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.59  E-value=0.00099  Score=52.12  Aligned_cols=23  Identities=22%  Similarity=0.515  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhcCC
Confidence            58899999999999999998754

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.59  E-value=0.0011  Score=51.54  Aligned_cols=22  Identities=32%  Similarity=0.525  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.+.+-
T Consensus        18 ~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           18 KVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999864

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=96.59  E-value=0.0012  Score=53.44  Aligned_cols=22  Identities=23%  Similarity=0.582  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.+++-
T Consensus        31 kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           31 TIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999885

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=96.59  E-value=0.0012  Score=51.80  Aligned_cols=23  Identities=26%  Similarity=0.485  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+++-.
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998753

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=96.58  E-value=0.0011  Score=52.38  Aligned_cols=22  Identities=27%  Similarity=0.569  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.+.+-
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5899999999999999999874

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.58  E-value=0.00059  Score=58.02  Aligned_cols=26  Identities=23%  Similarity=0.353  Sum_probs=19.4

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      ++-+++|.|++||||||+.+.|+..+
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~l   29 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIF   29 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            34589999999999999999998643

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.58  E-value=0.001  Score=51.28  Aligned_cols=21  Identities=29%  Similarity=0.513  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q 026376           57 RIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      .++|+|+.|+|||||++.+.+
T Consensus         8 ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            589999999999999999984

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=96.58  E-value=0.0012  Score=52.01  Aligned_cols=24  Identities=33%  Similarity=0.531  Sum_probs=21.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      .++|+|+.|+|||||++.+.+-..
T Consensus        22 ki~~vG~~~vGKTsLi~~l~~~~~   45 (196)
T 3llu_A           22 RILLMGLRRSGKSSIQKVVFHKMS   45 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCC
Confidence            689999999999999999998544

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=96.57  E-value=0.00055  Score=54.88  Aligned_cols=24  Identities=29%  Similarity=0.522  Sum_probs=21.9

Q ss_pred             CEEEEECCCCCcHHHHHHHHhcCc
Q 026376           56 SRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      -.++|+|+.|+|||||++.|+|-.
T Consensus        30 ~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           30 PEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCC
Confidence            478999999999999999999864

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.57  E-value=0.0011  Score=56.01  Aligned_cols=22  Identities=23%  Similarity=0.446  Sum_probs=20.2

Q ss_pred             CEEEEECCCCCcHHHHHHHHhc
Q 026376           56 SRIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      -+++|.|+.||||||+.+.|+.
T Consensus        76 ~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           76 YVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999983

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.57  E-value=0.0012  Score=51.52  Aligned_cols=22  Identities=32%  Similarity=0.522  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.+.+-
T Consensus        24 ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           24 ELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.56  E-value=0.001  Score=52.96  Aligned_cols=22  Identities=23%  Similarity=0.659  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.+.+-
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5899999999999999988764

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.56  E-value=0.0012  Score=54.37  Aligned_cols=25  Identities=28%  Similarity=0.339  Sum_probs=22.0

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      ++-+++|+|+.||||||+.+.|+-.
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~   52 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKS   52 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            5668999999999999999999753

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.55  E-value=0.0016  Score=50.17  Aligned_cols=27  Identities=22%  Similarity=0.498  Sum_probs=23.0

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      ..+..+.|.||.|+|||||++.++..+
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            345678999999999999999998764

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.55  E-value=0.0013  Score=51.67  Aligned_cols=22  Identities=27%  Similarity=0.588  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.+.+-
T Consensus        30 ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           30 KLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999875

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=96.54  E-value=0.0011  Score=51.49  Aligned_cols=22  Identities=32%  Similarity=0.525  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.+.+-
T Consensus        23 ~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           23 KVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             EEEEEEETTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5799999999999999999875

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.54  E-value=0.0013  Score=51.20  Aligned_cols=23  Identities=30%  Similarity=0.680  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        17 ~i~v~G~~~~GKssli~~l~~~~   39 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRFTDDT   39 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998753

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=96.54  E-value=0.0015  Score=52.12  Aligned_cols=24  Identities=25%  Similarity=0.454  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      .++|+|+.|+|||||++.+.+-..
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~~~~   50 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTDNKF   50 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCSCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCC
Confidence            489999999999999999987543

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=96.54  E-value=0.0013  Score=51.84  Aligned_cols=23  Identities=26%  Similarity=0.495  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        30 ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           30 KIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            68999999999999999998754

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.54  E-value=0.0012  Score=53.01  Aligned_cols=23  Identities=30%  Similarity=0.453  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|.|+.||||||+.+.|+-.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999997643

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=96.53  E-value=0.0012  Score=56.09  Aligned_cols=23  Identities=39%  Similarity=0.621  Sum_probs=21.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|||||||++.|+|..
T Consensus        26 ~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           26 QIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHHCCC
Confidence            69999999999999999999975

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.53  E-value=0.0011  Score=53.04  Aligned_cols=24  Identities=17%  Similarity=0.415  Sum_probs=21.3

Q ss_pred             CEEEEECCCCCcHHHHHHHHhcCc
Q 026376           56 SRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      -.++|+|+.|||||||++.|++..
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            379999999999999999998754

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.53  E-value=0.00096  Score=51.32  Aligned_cols=22  Identities=23%  Similarity=0.450  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.+++-
T Consensus         9 ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999874

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=96.52  E-value=0.0015  Score=51.35  Aligned_cols=22  Identities=18%  Similarity=0.472  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.+.+-
T Consensus        22 ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           22 KCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999999874

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.51  E-value=0.0014  Score=51.96  Aligned_cols=23  Identities=30%  Similarity=0.627  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        22 ~i~v~G~~~~GKSsli~~l~~~~   44 (213)
T 3cph_A           22 KILLIGDSGVGKSCLLVRFVEDK   44 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            68999999999999999998643

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=96.51  E-value=0.0012  Score=52.23  Aligned_cols=23  Identities=26%  Similarity=0.640  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDDT   32 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998743

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=96.50  E-value=0.0014  Score=59.47  Aligned_cols=38  Identities=16%  Similarity=0.311  Sum_probs=31.4

Q ss_pred             ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCC
Q 026376           43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQP   81 (239)
Q Consensus        43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p   81 (239)
                      .+++.+ +.+-+|+..+|+|++|+|||||++.|+.....
T Consensus       140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~  177 (473)
T 1sky_E          140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQ  177 (473)
T ss_dssp             HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred             hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhh
Confidence            355555 67789999999999999999999999876543

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.50  E-value=0.0015  Score=53.06  Aligned_cols=29  Identities=31%  Similarity=0.413  Sum_probs=24.7

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcCcCC
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGELQP   81 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p   81 (239)
                      .+|-+++|.|+.||||||+.+.|+..+..
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~   32 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE   32 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            46889999999999999999999876643

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.49  E-value=0.0015  Score=51.12  Aligned_cols=22  Identities=27%  Similarity=0.483  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.+.+-
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHhC
Confidence            5899999999999999888764

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=96.49  E-value=0.0017  Score=49.85  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=20.6

Q ss_pred             CEEEEECCCCCcHHHHHHHHhcC
Q 026376           56 SRIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      =.++|+|+.|+|||||++.+.+-
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999864

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=96.49  E-value=0.0014  Score=52.39  Aligned_cols=22  Identities=32%  Similarity=0.706  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.+.+-
T Consensus        36 ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           36 KVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999874

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.48  E-value=0.0013  Score=52.60  Aligned_cols=23  Identities=30%  Similarity=0.596  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+++-.
T Consensus        30 ki~vvG~~~vGKSsLi~~l~~~~   52 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALLHVFAKDC   52 (205)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998853

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.47  E-value=0.0016  Score=52.57  Aligned_cols=26  Identities=27%  Similarity=0.460  Sum_probs=22.3

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      +|-+++|+|+.||||||+.+.|+-.+
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            35679999999999999999997644

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.47  E-value=0.0016  Score=53.73  Aligned_cols=27  Identities=33%  Similarity=0.471  Sum_probs=24.4

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      +|.+++|.|++||||||+.+.|+..+.
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            688999999999999999999987654

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.47  E-value=0.0013  Score=52.18  Aligned_cols=23  Identities=22%  Similarity=0.501  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~~   49 (207)
T 2fv8_A           27 KLVVVGDGACGKTCLLIVFSKDE   49 (207)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            68999999999999999998854

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.46  E-value=0.0016  Score=54.98  Aligned_cols=22  Identities=32%  Similarity=0.342  Sum_probs=20.1

Q ss_pred             CEEEEECCCCCcHHHHHHHHhc
Q 026376           56 SRIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      .++.|.|++||||||+.+.|+-
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999985

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=96.45  E-value=0.0018  Score=52.31  Aligned_cols=22  Identities=41%  Similarity=0.880  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.++|.
T Consensus        39 kVvlvG~~~vGKSSLl~r~~~~   60 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIFAGV   60 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5999999999999999999874

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=96.43  E-value=0.001  Score=51.33  Aligned_cols=22  Identities=23%  Similarity=0.653  Sum_probs=9.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.+.+-
T Consensus        10 ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEECCCCC------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999998864

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.42  E-value=0.0019  Score=52.48  Aligned_cols=27  Identities=26%  Similarity=0.417  Sum_probs=24.2

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      +|-++++.|+.||||||+.+.|+..+.
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            488999999999999999999987664

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=96.41  E-value=0.0023  Score=50.92  Aligned_cols=23  Identities=17%  Similarity=0.235  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+++-.
T Consensus         9 ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            9 AVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998754

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=96.40  E-value=0.0015  Score=54.93  Aligned_cols=24  Identities=38%  Similarity=0.536  Sum_probs=22.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      .++|+|..|+|||||++.|+|...
T Consensus        28 ~i~vvG~~~~GKSSLln~l~g~~~   51 (299)
T 2aka_B           28 QIAVVGGQSAGKSSVLENFVGRDF   51 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred             eEEEEeCCCCCHHHHHHHHHCCCc
Confidence            799999999999999999999753

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=96.40  E-value=0.0015  Score=51.32  Aligned_cols=23  Identities=43%  Similarity=0.505  Sum_probs=20.5

Q ss_pred             CEEEEECCCCCcHHHHHHHHhcC
Q 026376           56 SRIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      =.++|+|+.|+|||||++.+.+-
T Consensus        30 ~ki~v~G~~~vGKSsLi~~l~~~   52 (192)
T 2b6h_A           30 MRILMVGLDAAGKTTILYKLKLG   52 (192)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHhC
Confidence            36999999999999999999764

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.40  E-value=0.0022  Score=52.21  Aligned_cols=26  Identities=31%  Similarity=0.496  Sum_probs=22.4

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .+-.++|+|+.||||||+.+.|+-.+
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            35679999999999999999998654

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.39  E-value=0.0018  Score=56.34  Aligned_cols=24  Identities=29%  Similarity=0.508  Sum_probs=21.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      +++|.||+|||||||.+.|+..+.
T Consensus         9 lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            9 LIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             eEEEECCCcCcHHHHHHHHHHHcC
Confidence            799999999999999999987653

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.39  E-value=0.0019  Score=57.63  Aligned_cols=29  Identities=24%  Similarity=0.123  Sum_probs=24.4

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           51 GIDLDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .-.+..++.|+|++||||||+.+.|+..+
T Consensus       254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             CCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            34567899999999999999999997643

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=96.39  E-value=0.0016  Score=51.55  Aligned_cols=23  Identities=22%  Similarity=0.531  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~~   49 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSKDQ   49 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            48999999999999999998753

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=96.39  E-value=0.0017  Score=53.99  Aligned_cols=23  Identities=30%  Similarity=0.655  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.|.|-.
T Consensus        38 ~I~lvG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           38 TVLVLGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999864

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.39  E-value=0.00062  Score=58.51  Aligned_cols=40  Identities=23%  Similarity=0.330  Sum_probs=30.6

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CEEEEEecCHH
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGLVLFQ--GGILMVSHDEH  205 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~tii~vsHd~~  205 (239)
                      ++.++++|| ...++......+.+.+.+..  ..+|+++++..
T Consensus       133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~  174 (353)
T 1sxj_D          133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVT  174 (353)
T ss_dssp             SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred             CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchh
Confidence            678999999 78899988888888887653  24667776654

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.37  E-value=0.021  Score=59.99  Aligned_cols=29  Identities=21%  Similarity=0.421  Sum_probs=25.2

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376           52 IDLDSRIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        52 i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      +.+|+++.|.||.|+|||||...++....
T Consensus       380 l~~G~lilI~G~pGsGKTtLaLqia~~~a  408 (2050)
T 3cmu_A          380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ  408 (2050)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             ccCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            88999999999999999999877765443

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.37  E-value=0.004  Score=60.48  Aligned_cols=28  Identities=29%  Similarity=0.602  Sum_probs=23.9

Q ss_pred             CEEEEECCCCCcHHHHHHHHhcCcCCCc
Q 026376           56 SRIAMVGPNGIGKSTILKLIAGELQPSS   83 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~Gl~~p~~   83 (239)
                      ..+.|.||+|+|||+|.+.|+.......
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~  616 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLFDTE  616 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHSSG
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence            3789999999999999999998775433

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=96.35  E-value=0.0018  Score=54.03  Aligned_cols=23  Identities=39%  Similarity=0.674  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++++|+.|+|||||++.|.|-.
T Consensus        41 ~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           41 TILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999864

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.35  E-value=0.0017  Score=50.68  Aligned_cols=22  Identities=27%  Similarity=0.539  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999865

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=96.34  E-value=0.0084  Score=49.29  Aligned_cols=52  Identities=12%  Similarity=0.074  Sum_probs=42.1

Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecC----------HHHHhhhcCeEEEEe
Q 026376          164 KKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHD----------EHLISGSVEELWVVS  218 (239)
Q Consensus       164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd----------~~~~~~~~d~i~~l~  218 (239)
                      .+.+++++||---..|   ..++.+.+.+.+..||+..+|          ...+..+||.|..|+
T Consensus        89 ~~~dvViIDEaQF~~~---v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk  150 (234)
T 2orv_A           89 LGVAVIGIDEGQFFPD---IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT  150 (234)
T ss_dssp             TTCSEEEESSGGGCTT---HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred             ccCCEEEEEchhhhhh---HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence            6789999999988765   677788888888899999999          334556899998874

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.33  E-value=0.0021  Score=51.49  Aligned_cols=25  Identities=52%  Similarity=0.666  Sum_probs=21.8

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           55 DSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        55 Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      +-+++|+|+.||||||+.+.|+..+
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4579999999999999999998743

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.32  E-value=0.0023  Score=52.10  Aligned_cols=29  Identities=28%  Similarity=0.383  Sum_probs=26.1

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcCcCC
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGELQP   81 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p   81 (239)
                      .+|-++++.|+.||||||+.+.|+-.+..
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            36899999999999999999999887765

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=96.30  E-value=0.00094  Score=53.36  Aligned_cols=23  Identities=26%  Similarity=0.618  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+++-.
T Consensus        13 ki~vvG~~~~GKSsli~~l~~~~   35 (218)
T 4djt_A           13 KICLIGDGGVGKTTYINRVLDGR   35 (218)
T ss_dssp             EEEEECCTTSSHHHHHCBCTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58899999999999999998643

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.29  E-value=0.002  Score=49.60  Aligned_cols=28  Identities=21%  Similarity=0.402  Sum_probs=23.4

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      ..+..+.|.||.|+|||||++.++....
T Consensus        41 ~~~~~vll~G~~G~GKT~la~~~~~~~~   68 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIVEGLAIKIV   68 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            3456789999999999999999987653

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.26  E-value=0.002  Score=51.74  Aligned_cols=24  Identities=21%  Similarity=0.458  Sum_probs=20.9

Q ss_pred             CEEEEECCCCCcHHHHHHHHhcCc
Q 026376           56 SRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      -+++|+|+.|+|||||++.++.-.
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            478999999999999998888654

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.25  E-value=0.0025  Score=55.08  Aligned_cols=24  Identities=29%  Similarity=0.555  Sum_probs=21.5

Q ss_pred             CEEEEECCCCCcHHHHHHHHhcCc
Q 026376           56 SRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      ..++|+||+|||||||.+.|+..+
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            378999999999999999998755

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.24  E-value=0.0025  Score=52.14  Aligned_cols=28  Identities=32%  Similarity=0.316  Sum_probs=24.6

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      .+|-+++|.|+.||||||+.+.|+..+.
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~   46 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLS   46 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4688999999999999999999987654

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.24  E-value=0.0022  Score=52.49  Aligned_cols=26  Identities=31%  Similarity=0.530  Sum_probs=22.9

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376           55 DSRIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        55 Ge~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      |-+++|.|+.||||||+.+.|+..++
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            56899999999999999999987653

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.24  E-value=0.0025  Score=54.92  Aligned_cols=25  Identities=32%  Similarity=0.648  Sum_probs=21.9

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           55 DSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        55 Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      +.+++|.||+|||||||...|+--+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC
Confidence            4578999999999999999998654

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=96.24  E-value=0.0022  Score=50.82  Aligned_cols=23  Identities=17%  Similarity=0.485  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        31 ki~vvG~~~vGKSsli~~l~~~~   53 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKTGA   53 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhhCC
Confidence            48999999999999999998643

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=96.22  E-value=0.0025  Score=51.07  Aligned_cols=22  Identities=27%  Similarity=0.635  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.+.+-
T Consensus        29 ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           29 KLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            6899999999999999998764

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.21  E-value=0.0037  Score=50.31  Aligned_cols=35  Identities=17%  Similarity=0.254  Sum_probs=27.8

Q ss_pred             ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 026376           43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      ..++..-+.+ .|..++|+||+|||||||...|+..
T Consensus        23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            3456555555 5788999999999999999998764

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=96.21  E-value=0.0026  Score=51.14  Aligned_cols=23  Identities=30%  Similarity=0.653  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        15 ki~v~G~~~vGKSsli~~l~~~~   37 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLLSRFTKNE   37 (223)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998753

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.20  E-value=0.0026  Score=55.31  Aligned_cols=31  Identities=23%  Similarity=0.360  Sum_probs=25.5

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEE
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF   87 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~   87 (239)
                      ++.+++|+||.|||||||...|+..+.   |+|.
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~---~eiI   69 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFP---LEVI   69 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSC---EEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCC---CcEE
Confidence            456899999999999999999997653   5553

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=96.19  E-value=0.0016  Score=50.71  Aligned_cols=22  Identities=32%  Similarity=0.472  Sum_probs=19.9

Q ss_pred             CEEEEECCCCCcHHHHHHHHhc
Q 026376           56 SRIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      =.++|+|+.|+|||||++.+.+
T Consensus        23 ~~i~v~G~~~~GKssli~~l~~   44 (189)
T 2x77_A           23 IRVLMLGLDNAGKTSILYRLHL   44 (189)
T ss_dssp             EEEEEEEETTSSHHHHHHHTCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            3699999999999999999965

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=96.19  E-value=0.0023  Score=50.76  Aligned_cols=21  Identities=24%  Similarity=0.458  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q 026376           57 RIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      .++|+|+.|+|||||++.+.+
T Consensus        32 ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           32 KCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            689999999999999988875

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.18  E-value=0.0026  Score=54.43  Aligned_cols=27  Identities=26%  Similarity=0.387  Sum_probs=24.5

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhc
Q 026376           51 GIDLDSRIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      -+.+|+++.|.|++|||||||...++.
T Consensus        94 Gl~~g~i~~i~G~~gsGKT~la~~la~  120 (322)
T 2i1q_A           94 GLESQSVTEFAGVFGSGKTQIMHQSCV  120 (322)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999999987774

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=96.17  E-value=0.0011  Score=52.27  Aligned_cols=22  Identities=27%  Similarity=0.687  Sum_probs=4.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.+.+-
T Consensus        22 ~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           22 KVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEC-----------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6899999999999999998875

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.15  E-value=0.00068  Score=56.24  Aligned_cols=33  Identities=39%  Similarity=0.670  Sum_probs=25.3

Q ss_pred             eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           45 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        45 l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      +.++++....|  +.|.||+|+|||||.++|+...
T Consensus        36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~   68 (268)
T 2r62_A           36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEA   68 (268)
T ss_dssp             HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred             HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence            33444455555  7899999999999999998753

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.14  E-value=0.0035  Score=51.41  Aligned_cols=27  Identities=30%  Similarity=0.525  Sum_probs=22.9

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      ....-+.|.||.|+|||||.+.++...
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~~~   63 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVATEA   63 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            445568899999999999999998754

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=96.08  E-value=0.0033  Score=50.59  Aligned_cols=26  Identities=31%  Similarity=0.548  Sum_probs=23.1

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376           55 DSRIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        55 Ge~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      |.+++|-|+-||||||+.+.|+-.+.
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~   27 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence            56899999999999999999988664

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.07  E-value=0.0019  Score=53.71  Aligned_cols=28  Identities=21%  Similarity=0.297  Sum_probs=24.1

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      .++-+++|.|+.||||||+.+.|+..+.
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            4677999999999999999999987663

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=96.05  E-value=0.0029  Score=50.15  Aligned_cols=22  Identities=23%  Similarity=0.445  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.+.+-
T Consensus        11 ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A           11 KCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999864

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.05  E-value=0.0027  Score=51.70  Aligned_cols=28  Identities=21%  Similarity=0.271  Sum_probs=23.5

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 026376           51 GIDLDSRIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .+++..++.|+||.||||||..+.|+-.
T Consensus        25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~   52 (217)
T 3umf_A           25 KLAKAKVIFVLGGPGSGKGTQCEKLVQK   52 (217)
T ss_dssp             CTTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred             hccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4456678999999999999999999753

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.03  E-value=0.0052  Score=49.82  Aligned_cols=25  Identities=20%  Similarity=0.360  Sum_probs=22.1

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHh
Q 026376           52 IDLDSRIAMVGPNGIGKSTILKLIA   76 (239)
Q Consensus        52 i~~Ge~~~iiG~NGsGKSTLl~~l~   76 (239)
                      +.+|+++.|.|+.|+|||||.--++
T Consensus        27 l~~G~l~~i~G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           27 FPEGTTVLLTGGTGTGKTTFAAQFI   51 (251)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            7899999999999999999975543

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.02  E-value=0.0038  Score=53.63  Aligned_cols=25  Identities=24%  Similarity=0.392  Sum_probs=21.7

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           55 DSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        55 Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      ..+++|+||+|||||||...|+...
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhC
Confidence            3478999999999999999998654

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.01  E-value=0.041  Score=57.87  Aligned_cols=27  Identities=19%  Similarity=0.433  Sum_probs=24.7

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhcC
Q 026376           52 IDLDSRIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        52 i~~Ge~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      +.+|+.+.|.||.|+|||||...++-.
T Consensus      1424 i~~g~~vll~GppGtGKT~LA~ala~e 1450 (2050)
T 3cmu_A         1424 LPMGRIVEIYGPESSGKTTLTLQVIAA 1450 (2050)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            889999999999999999999888653

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.00  E-value=0.002  Score=57.93  Aligned_cols=32  Identities=28%  Similarity=0.394  Sum_probs=26.3

Q ss_pred             EEEeCC--CEEEEECCCCCcHHHHHHHHhcCcCC
Q 026376           50 FGIDLD--SRIAMVGPNGIGKSTILKLIAGELQP   81 (239)
Q Consensus        50 l~i~~G--e~~~iiG~NGsGKSTLl~~l~Gl~~p   81 (239)
                      |.+.++  .+++|+|++|+||||+...|++.+..
T Consensus        92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~  125 (432)
T 2v3c_C           92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQK  125 (432)
T ss_dssp             CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred             ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            444434  59999999999999999999998764

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.00  E-value=0.0056  Score=48.20  Aligned_cols=34  Identities=18%  Similarity=0.173  Sum_probs=25.9

Q ss_pred             ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q 026376           43 ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        43 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      ..++..-+.+ .|.-+.|.|++|+|||||...+..
T Consensus         5 ~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A            5 QTWHANFLVI-DKMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             EEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred             EEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            3455544555 578899999999999999887754

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.94  E-value=0.0051  Score=46.31  Aligned_cols=29  Identities=17%  Similarity=0.204  Sum_probs=24.1

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcCcCC
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGELQP   81 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p   81 (239)
                      ..+.-+.|.||.|+|||++.+.|......
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~   50 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQFGRN   50 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence            34567899999999999999999876543

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=95.94  E-value=0.0047  Score=48.76  Aligned_cols=54  Identities=11%  Similarity=0.130  Sum_probs=34.3

Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHH----------HHhhhcCeEEEEeC
Q 026376          164 KKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEH----------LISGSVEELWVVSE  219 (239)
Q Consensus       164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~----------~~~~~~d~i~~l~~  219 (239)
                      .+++++++||--. +++.... .+..+.+.+..|+++.++.+          .+..+||.+..|+.
T Consensus        75 ~~~dvviIDE~Q~-~~~~~~~-~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~  138 (184)
T 2orw_A           75 EDTRGVFIDEVQF-FNPSLFE-VVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKA  138 (184)
T ss_dssp             TTEEEEEECCGGG-SCTTHHH-HHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCB
T ss_pred             CCCCEEEEECccc-CCHHHHH-HHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEeee
Confidence            3678999999743 6555433 34444444778888877443          23346899887753

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=95.85  E-value=0.0053  Score=51.89  Aligned_cols=25  Identities=28%  Similarity=0.458  Sum_probs=22.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQP   81 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~p   81 (239)
                      .++++|.+|+|||||++.|.|....
T Consensus       122 ~v~~vG~~nvGKSsliN~l~~~~~~  146 (282)
T 1puj_A          122 RALIIGIPNVGKSTLINRLAKKNIA  146 (282)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSCCC
T ss_pred             eEEEEecCCCchHHHHHHHhcCcee
Confidence            6899999999999999999997643

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=95.84  E-value=0.0044  Score=55.03  Aligned_cols=23  Identities=30%  Similarity=0.355  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|..++|||||++.|+|-.
T Consensus         2 kI~ivG~pnvGKSTL~n~L~~~~   24 (397)
T 1wxq_A            2 EIGVVGKPNVGKSTFFSAATLVD   24 (397)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            47999999999999999999864

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=95.80  E-value=0.0041  Score=55.67  Aligned_cols=23  Identities=52%  Similarity=0.742  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.|+|-.
T Consensus         5 ~V~ivG~~nvGKStL~n~l~~~~   27 (436)
T 2hjg_A            5 VVAIVGRPNVGKSTIFNRIAGER   27 (436)
T ss_dssp             EEEEECSTTSSHHHHHHHHEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999853

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=95.80  E-value=0.0064  Score=51.81  Aligned_cols=24  Identities=29%  Similarity=0.584  Sum_probs=21.0

Q ss_pred             CEEEEECCCCCcHHHHHHHHhcCc
Q 026376           56 SRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      -.++|+|+.|+|||||++.+.+-.
T Consensus         4 ~KI~lvG~~~vGKSSLi~~l~~~~   27 (307)
T 3r7w_A            4 SKLLLMGRSGSGKSSMRSIIFSNY   27 (307)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHSCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Confidence            368999999999999999987753

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.79  E-value=0.0052  Score=48.36  Aligned_cols=41  Identities=24%  Similarity=0.331  Sum_probs=28.6

Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CEEEEEecCHH
Q 026376          164 KKPHIILLDEPSNHLDLDAVEALIQGLVLFQ--GGILMVSHDEH  205 (239)
Q Consensus       164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~tii~vsHd~~  205 (239)
                      .++.++++||. ..++......+.+.+....  ..+|++|+...
T Consensus       101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~  143 (226)
T 2chg_A          101 APFKIIFLDEA-DALTADAQAALRRTMEMYSKSCRFILSCNYVS  143 (226)
T ss_dssp             CSCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred             cCceEEEEeCh-hhcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence            36889999994 5577777777777776542  34677776653

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=95.77  E-value=0.0058  Score=49.24  Aligned_cols=23  Identities=39%  Similarity=0.569  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      ++.|+||.||||+|..+.|+--+
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999997543

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=95.73  E-value=0.0033  Score=50.31  Aligned_cols=38  Identities=13%  Similarity=0.159  Sum_probs=25.5

Q ss_pred             HHHHHHHHhccCCCEEEEeCCCC-----CCCHHHHHHHHHHHh
Q 026376          154 SRVAFAKITFKKPHIILLDEPSN-----HLDLDAVEALIQGLV  191 (239)
Q Consensus       154 qrv~laral~~~p~llllDEPt~-----~LD~~~~~~l~~~l~  191 (239)
                      -.-.|++.+..+|.+.+.++|+.     .+|+.....+...+.
T Consensus       165 l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (221)
T 3gj0_A          165 PFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLE  207 (221)
T ss_dssp             HHHHHHHHHHTCTTCCEEECCCBCCCSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcccccccCCCCCCCCCCcchhhhhhhHHHHh
Confidence            34467777888888887777765     566666666555544

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.71  E-value=0.0054  Score=53.41  Aligned_cols=26  Identities=31%  Similarity=0.548  Sum_probs=22.6

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376           55 DSRIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        55 Ge~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      .-+++|+|+.|+|||||++.|++.+.
T Consensus        79 ~~~I~i~G~~G~GKSTl~~~L~~~l~  104 (355)
T 3p32_A           79 AHRVGITGVPGVGKSTAIEALGMHLI  104 (355)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34899999999999999999987653

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=95.66  E-value=0.0011  Score=52.24  Aligned_cols=23  Identities=30%  Similarity=0.661  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        35 ki~vvG~~~~GKSsli~~l~~~~   57 (199)
T 3l0i_B           35 KLLLIGDSGVGKSCLLLRFADDT   57 (199)
T ss_dssp             EEEEECCTTSCCTTTTTSSBCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998754

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=94.64  E-value=0.0019  Score=51.04  Aligned_cols=23  Identities=22%  Similarity=0.406  Sum_probs=20.0

Q ss_pred             CEEEEECCCCCcHHHHHHHHhcC
Q 026376           56 SRIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      =.++|+|+.|+|||||++.+.+-
T Consensus        31 ~ki~v~G~~~~GKSsli~~l~~~   53 (204)
T 3th5_A           31 IKCVVVGDGAVGKTCLLISYTTN   53 (204)
Confidence            36899999999999999888753

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=95.63  E-value=0.004  Score=54.13  Aligned_cols=23  Identities=39%  Similarity=0.596  Sum_probs=21.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|..|+|||||++.|+|..
T Consensus        33 ~I~vvG~~~~GKSSLln~L~g~~   55 (353)
T 2x2e_A           33 QIAVVGGQSAGKSSVLENFVGRD   55 (353)
T ss_dssp             EEEEECBTTSSHHHHHHTTTTSC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCC
Confidence            79999999999999999999964

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.60  E-value=0.0072  Score=50.91  Aligned_cols=26  Identities=31%  Similarity=0.468  Sum_probs=22.6

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      ++..+.|.||.|+|||||.+.++..+
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            45579999999999999999888765

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=95.60  E-value=0.0076  Score=52.41  Aligned_cols=32  Identities=22%  Similarity=0.473  Sum_probs=26.0

Q ss_pred             eeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 026376           47 NLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        47 ~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .+.++++---.++|+|..+||||||++.|++-
T Consensus       150 ~~~leLk~la~V~lvG~~nvGKSTLln~L~~~  181 (342)
T 1lnz_A          150 YIVLELKVLADVGLVGFPSVGKSTLLSVVSSA  181 (342)
T ss_dssp             EEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred             hHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence            45556655556999999999999999999875

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=95.53  E-value=0.0044  Score=55.84  Aligned_cols=36  Identities=31%  Similarity=0.445  Sum_probs=28.1

Q ss_pred             eeeeEEEeCCCE--EEEECCCCCcHHHHHHHHhcCcCC
Q 026376           46 KNLNFGIDLDSR--IAMVGPNGIGKSTILKLIAGELQP   81 (239)
Q Consensus        46 ~~isl~i~~Ge~--~~iiG~NGsGKSTLl~~l~Gl~~p   81 (239)
                      +.+.-.+..|..  +.|.||.|+|||||.++|+.....
T Consensus        39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~   76 (447)
T 3pvs_A           39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANA   76 (447)
T ss_dssp             SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCC
Confidence            344445556665  899999999999999999987654

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=95.52  E-value=0.0064  Score=54.08  Aligned_cols=24  Identities=29%  Similarity=0.530  Sum_probs=20.8

Q ss_pred             CEEEEECCCCCcHHHHHHHHhcCc
Q 026376           56 SRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .+++|.||+|||||||.+.|+-.+
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~   26 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKF   26 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHHHC
Confidence            378999999999999999987644

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=95.49  E-value=0.0071  Score=53.08  Aligned_cols=25  Identities=32%  Similarity=0.450  Sum_probs=23.0

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      ++..++++|..|+|||||+|.|.|.
T Consensus       161 ~~~~i~~vG~~nvGKStliN~L~~~  185 (369)
T 3ec1_A          161 EGGDVYVVGCTNVGKSTFINRIIEE  185 (369)
T ss_dssp             TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCcEEEEcCCCCchHHHHHHHHhh
Confidence            4668999999999999999999986

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.49  E-value=0.0094  Score=50.90  Aligned_cols=26  Identities=38%  Similarity=0.555  Sum_probs=23.1

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376           55 DSRIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        55 Ge~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      +.-+.|.||.|+|||+|+++|+....
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            67899999999999999999987554

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.44  E-value=0.008  Score=49.90  Aligned_cols=25  Identities=28%  Similarity=0.343  Sum_probs=21.8

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      +..-+.|.||.|+|||||.+.++..
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            4456889999999999999999875

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=95.40  E-value=0.007  Score=54.80  Aligned_cols=25  Identities=28%  Similarity=0.501  Sum_probs=22.0

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .|=.++|+|+.|+|||||++.|+|.
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~  247 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQS  247 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            3445999999999999999999985

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=95.38  E-value=0.0072  Score=55.92  Aligned_cols=24  Identities=13%  Similarity=0.347  Sum_probs=22.1

Q ss_pred             CEEEEECCCCCcHHHHHHHHhcCc
Q 026376           56 SRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      -+++|+|..|+|||||++.|.|..
T Consensus        66 ~~V~vvG~~n~GKSTLIN~Llg~~   89 (550)
T 2qpt_A           66 PMVLVAGQYSTGKTSFIQYLLEQE   89 (550)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCc
Confidence            489999999999999999999964

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.37  E-value=0.0095  Score=49.91  Aligned_cols=25  Identities=36%  Similarity=0.652  Sum_probs=22.3

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           55 DSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        55 Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      +.-+.|.||.|+|||||.+.++...
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l   74 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLA   74 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh
Confidence            4568899999999999999999866

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=95.35  E-value=0.0095  Score=52.74  Aligned_cols=24  Identities=33%  Similarity=0.522  Sum_probs=21.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      .++++|+.|+|||||++.|+|...
T Consensus        10 ~I~vvG~~~~GKSTLi~~L~~~~~   33 (403)
T 3sjy_A           10 NIGVVGHVDHGKTTLVQAITGIWT   33 (403)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCccc
Confidence            689999999999999999999543

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.35  E-value=0.01  Score=50.94  Aligned_cols=27  Identities=37%  Similarity=0.455  Sum_probs=23.6

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .+..-+.|.||.|+|||||.+.++...
T Consensus        43 ~~~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           43 TPWRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHHc
Confidence            455679999999999999999999865

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.29  E-value=0.011  Score=48.55  Aligned_cols=23  Identities=30%  Similarity=0.553  Sum_probs=20.1

Q ss_pred             CEEEEECCCCCcHHHHHHHHhcC
Q 026376           56 SRIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      -..||+|+.||||||+.+.|+-.
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~~   31 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKEK   31 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cceeeECCCCCCHHHHHHHHHHH
Confidence            36899999999999999998653

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=95.29  E-value=0.01  Score=51.57  Aligned_cols=26  Identities=35%  Similarity=0.561  Sum_probs=22.8

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      ++.-+.|.||+|+||||+.++|+...
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~   75 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLL   75 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            34568999999999999999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	239
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	1e-29
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	2e-29
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	3e-27
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	1e-26
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	1e-25
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	2e-25
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	2e-23
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	8e-23
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	3e-22
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	4e-22
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	9e-21
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	3e-20
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	1e-19
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	1e-19
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	2e-19
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	1e-18
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	2e-18
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	2e-17
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	1e-16
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	1e-16
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	2e-15
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	5e-09
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	6e-05
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	5e-09
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	0.002
g1xew.1	329	c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furi	0.002
d1khta_	190	c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco	0.003
d2i3ba1	189	c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57	0.003
d1q3ta_	223	c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae	0.004

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (275), Expect = 1e-29
 Identities = 54/244 (22%), Positives = 109/244 (44%), Gaps = 29/244 (11%)

Query: 1   MGHVDEVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAM 60
            G + E V   +   +  + ++      +SFS       G P+L KN+N  I+    +A+
Sbjct: 16  FGELLEKVQQSNGDRKHSSDENN-----VSFSHLCLV--GNPVL-KNINLNIEKGEMLAI 67

Query: 61  VGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP 120
            G  G GK+++L LI GEL+ S G +  S   R++  SQ       +    +   +    
Sbjct: 68  TGSTGSGKTSLLMLILGELEASEGIIKHSG--RVSFCSQFSW----IMPGTIKENIIFGV 121

Query: 121 GVPEQKLRAHLGSFGVTGNLALQP----------MYTLSGGQKSRVAFAKITFKKPHIIL 170
              E + ++ + +  +  ++                TLSGGQ++R++ A+  +K   + L
Sbjct: 122 SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYL 181

Query: 171 LDEPSNHLDLDAVEALIQGLVLFQGG---ILMVSHDEHLISGSVEELWVVSEGKATPFHG 227
           LD P  +LD+   E + +  V         ++V+     +  + +++ ++ +G +  F+G
Sbjct: 182 LDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKA-DKILILHQGSSY-FYG 239

Query: 228 TFHD 231
           TF +
Sbjct: 240 TFSE 243

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score =  108 bits (270), Expect = 2e-29
 Identities = 47/239 (19%), Positives = 98/239 (41%), Gaps = 30/239 (12%)

Query: 28  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           ++S     F Y     + ++++F    +S IA  GP+G GKSTI  L+    QP++G + 
Sbjct: 1   MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60

Query: 88  -----------RSAKVRIAV-------FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA 129
                       + + +I          +    + L             +  +     R+
Sbjct: 61  IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120

Query: 130 HLGSFGVTGNLAL-QPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 188
            + +     N  + +    +SGGQ+ R+A A+   + P I++LDE +  LD ++   + +
Sbjct: 121 FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180

Query: 189 GLVLFQGG--ILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD-------YKKMLQS 238
            L     G   L+++H    I  + ++++ + +G+ T   G  ++       Y K +  
Sbjct: 181 ALDSLMKGRTTLVIAHRLSTIVDA-DKIYFIEKGQIT-GSGKHNELVATHPLYAKYVSE 237

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score =  102 bits (257), Expect = 3e-27
 Identities = 53/243 (21%), Positives = 92/243 (37%), Gaps = 59/243 (24%)

Query: 22  DRPG-PPI------ISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTIL 72
           +  G  PI      I     SF Y     PIL K++N  I+    +A VG +G GKST++
Sbjct: 3   NGVGAQPIEIKQGRIDIDHVSFQYNDNEAPIL-KDINLSIEKGETVAFVGMSGGGKSTLI 61

Query: 73  KLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCF------------- 119
            LI      +SG +               +DG ++       +                 
Sbjct: 62  NLIPRFYDVTSGQIL--------------IDGHNIKDFLTGSLRNQIGLVQQDNILFSDT 107

Query: 120 ---------PGVPEQKLRAHLGSFGVTGNLALQPM----------YTLSGGQKSRVAFAK 160
                    P   ++++            +   P             LSGGQK R++ A+
Sbjct: 108 VKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIAR 167

Query: 161 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGG--ILMVSHDEHLISGSVEELWVVS 218
           I    P I++LDE ++ LDL++   + + L +       L+V+H    I+ + +++ V+ 
Sbjct: 168 IFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHA-DKIVVIE 226

Query: 219 EGK 221
            G 
Sbjct: 227 NGH 229

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score =  101 bits (253), Expect = 1e-26
 Identities = 51/239 (21%), Positives = 88/239 (36%), Gaps = 31/239 (12%)

Query: 29  ISFSDASFGYPGGPI-LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           + F + +F YPG  +   +N+N  I     +A+VG +G GKSTI  LI        G + 
Sbjct: 14  LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 73

Query: 88  ---------RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG 138
                      A +R  V        L   +               +++           
Sbjct: 74  MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMD 133

Query: 139 NLALQPM----------YTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQ 188
            +                 LSGGQ+ R+A A+   +   I++LDE ++ LD ++  A+  
Sbjct: 134 FINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA 193

Query: 189 GLVLFQGG--ILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD-------YKKMLQS 238
            L   Q     L+++H    I    +E+ VV +G      GT  +       Y ++ + 
Sbjct: 194 ALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIV-ERGTHSELLAQHGVYAQLHKM 250

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 98.4 bits (245), Expect = 1e-25
 Identities = 52/252 (20%), Positives = 95/252 (37%), Gaps = 57/252 (22%)

Query: 29  ISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           I+F +  F Y    P++  N+N  I     I +VG +G GKST+ KLI     P +G V 
Sbjct: 2   ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61

Query: 88  RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCF----------------------PGVPEQ 125
                         +DG DL+     ++ R                        PG+  +
Sbjct: 62  --------------IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVE 107

Query: 126 KLRAHLGSFGVTGNLALQPM----------YTLSGGQKSRVAFAKITFKKPHIILLDEPS 175
           K+       G    ++                LSGGQ+ R+A A+     P I++ DE +
Sbjct: 108 KVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEAT 167

Query: 176 NHLDLDAVEALIQGLVLFQGG--ILMVSHDEHLISGSVEELWVVSEGK----ATP---FH 226
           + LD ++   +++ +     G  +++++H    +  + + + V+ +GK            
Sbjct: 168 SALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNA-DRIIVMEKGKIVEQGKHKELLS 226

Query: 227 GTFHDYKKMLQS 238
                Y  + Q 
Sbjct: 227 EPESLYSYLYQL 238

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 96.9 bits (241), Expect = 2e-25
 Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 14/189 (7%)

Query: 28  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
            +   D S GY   P+L + +   I+  + +   GPNGIGK+T+LK I+  L+P  G + 
Sbjct: 2   KLEIRDLSVGY-DKPVL-ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59

Query: 88  ------RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH--LGSFGVTGN 139
                    K +I    +  +    +S    L  +    GV   K      L S  V   
Sbjct: 60  YNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL 119

Query: 140 LALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV--LFQGGI 197
              + +  LS G   RV  A        I +LD+P   +D D+   +++ ++  L + GI
Sbjct: 120 --KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGI 177

Query: 198 LMVSHDEHL 206
           +++S  E L
Sbjct: 178 VIISSREEL 186

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.7 bits (230), Expect = 2e-23
 Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 34/242 (14%)

Query: 29  ISFSDASFGYPGGP--ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86
           + F D SF YP  P  ++ + L F +      A+VGPNG GKST+  L+    QP+ G +
Sbjct: 12  VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 71

Query: 87  F-----------RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP---GVPEQKLRAHLG 132
                       R    ++A   Q            + Y +   P    +    +++   
Sbjct: 72  LLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAH 131

Query: 133 SF-----GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA---VE 184
           SF             +    LSGGQ+  VA A+   +KP +++LD+ ++ LD ++   VE
Sbjct: 132 SFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVE 191

Query: 185 ALIQGLVLFQG-GILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHD-------YKKML 236
            L+          +L+++    L+  + + +  +  G      GT          Y  M+
Sbjct: 192 QLLYESPERYSRSVLLITQHLSLVEQA-DHILFLEGGAIR-EGGTHQQLMEKKGCYWAMV 249

Query: 237 QS 238
           Q+
Sbjct: 250 QA 251

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 90.7 bits (225), Expect = 8e-23
 Identities = 49/210 (23%), Positives = 87/210 (41%), Gaps = 29/210 (13%)

Query: 28  IISFSDASFGYPGGPILF---KNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSG 84
           +I   + +  Y  G  +    KN+N  I     ++++GP+G GKST+L +I    +P+ G
Sbjct: 1   MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60

Query: 85  TVF---------------RSAKVRIAVFSQHH--VDGLDLSSNPLLYM-MRCFPGVPEQK 126
            V+               +  + +I    Q    +  L    N  L +  +    +  ++
Sbjct: 61  EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120

Query: 127 LRAHL----GSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDA 182
            R           +    A      LSGGQ+ RVA A+     P IIL D+P+  LD   
Sbjct: 121 RRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKT 180

Query: 183 ---VEALIQGLVLFQG-GILMVSHDEHLIS 208
              +  L++ L    G  +++V+HD ++  
Sbjct: 181 GEKIMQLLKKLNEEDGKTVVVVTHDINVAR 210

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 89.3 bits (221), Expect = 3e-22
 Identities = 43/210 (20%), Positives = 82/210 (39%), Gaps = 19/210 (9%)

Query: 29  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF- 87
           +   D         IL K ++F I+      ++GPNG GK+T L++I+  ++PSSG V  
Sbjct: 3   VVVKDLRKRIGKKEIL-KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTV 61

Query: 88  ---------RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSF 134
                       +  I+   +      ++     L  +  F        E+ +       
Sbjct: 62  FGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIA 121

Query: 135 GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQ 194
           G+ G      + T S G   ++  A+     P + +LDEP++ LD+     + + L    
Sbjct: 122 GL-GEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS 180

Query: 195 ---GGILMVSHDEHLISGSVEELWVVSEGK 221
                IL+ SH+   +    + + ++  G 
Sbjct: 181 QEGLTILVSSHNMLEVEFLCDRIALIHNGT 210

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 89.1 bits (221), Expect = 4e-22
 Identities = 45/210 (21%), Positives = 91/210 (43%), Gaps = 19/210 (9%)

Query: 29  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF- 87
           +   + +  +     +   LN  I     + ++GP+G GK+T L++IAG  +P+ G ++ 
Sbjct: 7   VKLENLTKRFGNFTAV-NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF 65

Query: 88  --------RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSFG 135
                         I++  Q +     ++    +         P    ++++R       
Sbjct: 66  GDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQ 125

Query: 136 VTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDL---DAVEALIQGLVL 192
           +   L  +    LSGGQ+ RVA A+    +P ++L+DEP ++LD     A+ A I+ L  
Sbjct: 126 IEE-LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 184

Query: 193 FQGG-ILMVSHDEHLISGSVEELWVVSEGK 221
                 + V+HD+       + + V++ G+
Sbjct: 185 KLKVTTIYVTHDQVEAMTMGDRIAVMNRGQ 214

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 85.0 bits (210), Expect = 9e-21
 Identities = 46/215 (21%), Positives = 79/215 (36%), Gaps = 29/215 (13%)

Query: 28  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           ++   D +            L+  +     + +VGPNG GKST+L  +AG +    G++ 
Sbjct: 3   VMQLQDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQ 56

Query: 88  -----------RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGV 136
                          +  A  SQ             L + +       + L    G+  +
Sbjct: 57  FAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQ-HDKTRTELLNDVAGALAL 115

Query: 137 TGNLALQPMYTLSGGQKSRVAFAKI-------TFKKPHIILLDEPSNHLDL---DAVEAL 186
             +   +    LSGG+  RV  A +             ++LLDEP N LD+    A++ +
Sbjct: 116 D-DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKI 174

Query: 187 IQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGK 221
           +  L      I+M SHD +         W++  GK
Sbjct: 175 LSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGK 209

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 84.3 bits (208), Expect = 3e-20
 Identities = 37/225 (16%), Positives = 78/225 (34%), Gaps = 32/225 (14%)

Query: 28  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           I+   +    +     L   ++  ++      ++GPNG GKST++ +I G L+   G V+
Sbjct: 4   ILRTENIVKYFGEFKAL-DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62

Query: 88  -------------RSAKVRIAVFSQHHVD-----------GLDLSSNPLLYMMRCFPGVP 123
                              +  F                 G        L  +     +P
Sbjct: 63  FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122

Query: 124 EQKLRA----HLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD 179
           +++        +  F    +L  +    LSGGQ   V   +     P +I++DEP   + 
Sbjct: 123 KEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVA 182

Query: 180 LDAVEALIQGLVLFQG---GILMVSHDEHLISGSVEELWVVSEGK 221
                 +   ++  +      L++ H   ++   ++ L+V+  G+
Sbjct: 183 PGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQ 227

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 82.7 bits (204), Expect = 1e-19
 Identities = 49/217 (22%), Positives = 93/217 (42%), Gaps = 25/217 (11%)

Query: 28  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
            +   D    +     + + ++  +     + ++GP+G GK+T L++IAG  +PS G ++
Sbjct: 3   GVRLVDVWKVFGEVTAV-REMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61

Query: 88  ---------------RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVP----EQKLR 128
                                IA+  Q +     ++    +        VP    +Q++R
Sbjct: 62  IGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVR 121

Query: 129 AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDAVEA 185
                 G+T  L  +P   LSGGQ+ RVA  +   +KP + L+DEP ++LD      + A
Sbjct: 122 EVAELLGLTELLNRKP-RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRA 180

Query: 186 LIQGLVLFQG-GILMVSHDEHLISGSVEELWVVSEGK 221
            ++ L    G   + V+HD+       + + V++ G 
Sbjct: 181 ELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGV 217

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 82.7 bits (204), Expect = 1e-19
 Identities = 40/213 (18%), Positives = 77/213 (36%), Gaps = 19/213 (8%)

Query: 27  PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTV 86
            ++        Y     + K ++  +     + ++G NG GK+T L  IAG ++   G +
Sbjct: 5   IVLEVQSLHVYYGAIHAI-KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63

Query: 87  F------------RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPE---QKLRAHL 131
                           ++ IA+  +      +L+    L M        E   + L    
Sbjct: 64  IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIF 123

Query: 132 GSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV 191
             F        Q   TLSGG++  +A  +    +P ++++DEPS  L    V  + + + 
Sbjct: 124 SLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQ 183

Query: 192 LFQG---GILMVSHDEHLISGSVEELWVVSEGK 221
                   IL+V  +           +V+  G+
Sbjct: 184 KINQEGTTILLVEQNALGALKVAHYGYVLETGQ 216

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 81.5 bits (201), Expect = 2e-19
 Identities = 48/209 (22%), Positives = 89/209 (42%), Gaps = 17/209 (8%)

Query: 29  ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF- 87
           +   + +  +    +  K++N  I     +  VGP+G GKST+L++IAG    +SG +F 
Sbjct: 1   VQLQNVTKAWGEVVVS-KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI 59

Query: 88  --------RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA---HLGSFGV 136
                     A+  + +  Q +     LS    +       G  ++ +      +     
Sbjct: 60  GEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQ 119

Query: 137 TGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDAVEALIQGLVLF 193
             +L  +    LSGGQ+ RVA  +    +P + LLDEP ++LD      +   I  L   
Sbjct: 120 LAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR 179

Query: 194 QGG-ILMVSHDEHLISGSVEELWVVSEGK 221
            G  ++ V+HD+       +++ V+  G+
Sbjct: 180 LGRTMIYVTHDQVEAMTLADKIVVLDAGR 208

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 79.5 bits (196), Expect = 1e-18
 Identities = 47/220 (21%), Positives = 95/220 (43%), Gaps = 28/220 (12%)

Query: 28  IISFSDASFGYPGGPILFKNLNFGIDLD----SRIAMVGPNGIGKSTILKLIAGELQPSS 83
           +I  S+ +  +  G    + LN  + L         ++G +G GKST+++ +    +P+ 
Sbjct: 1   MIKLSNITKVFHQGTRTIQALN-NVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTE 59

Query: 84  GTVF--------------RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA 129
           G+V                 A+ +I +  QH       +    + +       P+ +++ 
Sbjct: 60  GSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKR 119

Query: 130 H----LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDA 182
                L   G+ G+        LSGGQK RVA A+     P ++L DE ++ LD     +
Sbjct: 120 RVTELLSLVGL-GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178

Query: 183 VEALIQGLVLFQG-GILMVSHDEHLISGSVEELWVVSEGK 221
           +  L++ +    G  IL+++H+  ++    + + V+S G+
Sbjct: 179 ILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGE 218

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 79.5 bits (196), Expect = 2e-18
 Identities = 45/226 (19%), Positives = 88/226 (38%), Gaps = 33/226 (14%)

Query: 28  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
            +   D    Y G  +L K ++        I+++G +G GKST L+ I    +PS G + 
Sbjct: 2   KLHVIDLHKRYGGHEVL-KGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 60

Query: 88  ------------------------RSAKVRIAVFSQHHVDGLDLS-SNPLLYMMRCFPGV 122
                                   R  + R+ +  QH      ++    ++       G+
Sbjct: 61  VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL 120

Query: 123 PEQKLRAH----LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL 178
            +   R      L   G+      +    LSGGQ+ RV+ A+    +P ++L DEP++ L
Sbjct: 121 SKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSAL 180

Query: 179 DLDAVEALIQGLVLFQG---GILMVSHDEHLISGSVEELWVVSEGK 221
           D + V  +++ +         +++V+H+          +  + +GK
Sbjct: 181 DPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 226

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 76.2 bits (187), Expect = 2e-17
 Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 19/195 (9%)

Query: 45  FKNLNFGIDLDSR---IAMVGPNGIGKSTILKLIAGELQPSSGTVF---------RSAKV 92
             N    +D +       ++GP G GKS  L+LIAG ++P  G V             + 
Sbjct: 11  LGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERR 70

Query: 93  RIAVFSQHH--VDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSG 150
            I    Q +     L +  N    +        ++++R      G+   L  +    LSG
Sbjct: 71  GIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAH-LLDRKPARLSG 129

Query: 151 GQKSRVAFAKITFKKPHIILLDEPSNHLD---LDAVEALIQGLVLFQGG-ILMVSHDEHL 206
           G++ RVA A+    +P ++LLDEP + +D      +   ++ +       IL V+HD   
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE 189

Query: 207 ISGSVEELWVVSEGK 221
            +   +E+ V+  G+
Sbjct: 190 AAMLADEVAVMLNGR 204

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 74.0 bits (181), Expect = 1e-16
 Identities = 53/215 (24%), Positives = 99/215 (46%), Gaps = 22/215 (10%)

Query: 29  ISFSDASFGYPGGPIL-FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           I   + S  +  G ++   N+N  I+   R  ++GP+G GK+T +++IAG   PS+G ++
Sbjct: 4   IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63

Query: 88  --------------RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRA---H 130
                              +I +  Q      +L++   +        + ++++R     
Sbjct: 64  FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE 123

Query: 131 LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDAVEALI 187
           +       ++       LSG Q+ RVA A+   K P ++LLDEP ++LD    D+  AL+
Sbjct: 124 VAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALV 183

Query: 188 QGLVLFQGG-ILMVSHDEHLISGSVEELWVVSEGK 221
           + +    G  +L+VSHD   I    + + V+ +GK
Sbjct: 184 KEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGK 218

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 72.7 bits (177), Expect = 1e-16
 Identities = 20/167 (11%), Positives = 50/167 (29%), Gaps = 14/167 (8%)

Query: 57  RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMM 116
           +I + G  G+GK+T++K I   L   +   +           +     +           
Sbjct: 2   KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTE------GK 55

Query: 117 RCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSN 176
           +          +  +GS+GV         +          A+ +    +  +I++DE   
Sbjct: 56  KKIFSSKFFTSKKLVGSYGVN-----VQYFEELAIPILERAYREAKKDRRKVIIIDEIGK 110

Query: 177 HLDL--DAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGK 221
                    + + Q +      ++       +    V+E+  +    
Sbjct: 111 MELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHP-LVKEIRRLPGAV 156

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 70.9 bits (173), Expect = 2e-15
 Identities = 49/208 (23%), Positives = 84/208 (40%), Gaps = 17/208 (8%)

Query: 28  IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF 87
           +I     S  +    +   NL+  ++      ++GP G GK+  L+LIAG   P SG + 
Sbjct: 1   MIEIESLSRKWKNFSL--DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58

Query: 88  RSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGV----------PEQKLRAHLGSFGVT 137
              K    +  + H       +  L   M     +            +++        + 
Sbjct: 59  LDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIE 118

Query: 138 GNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLD---LDAVEALIQGLVLFQ 194
             L   P+ TLSGG++ RVA A+     P I+LLDEP + LD    +    ++  L    
Sbjct: 119 HLLDRNPL-TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN 177

Query: 195 G-GILMVSHDEHLISGSVEELWVVSEGK 221
              +L ++HD+       + + VV +GK
Sbjct: 178 KLTVLHITHDQTEARIMADRIAVVMDGK 205

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score = 35.3 bits (80), Expect = 0.003
 Identities = 6/23 (26%), Positives = 12/23 (52%)

Query: 58 IAMVGPNGIGKSTILKLIAGELQ 80
          + + G  G+G +T  +L    L+
Sbjct: 4  VVVTGVPGVGSTTSSQLAMDNLR 26

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 58 IAMVGPNGIGKSTILKLIAGELQPSSGTV 86
          + + GP G+GK+T++   +  L+ S   V
Sbjct: 4  VFLTGPPGVGKTTLIHKASEVLKSSGVPV 32

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Length = 223

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 4/95 (4%)

Query: 57  RIAMVGPNGIGKSTILKLIAGELQ---PSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLL 113
           +IA+ GP   GKST+ K+IA +       +G ++R+A   +A+ +Q  V+ ++     L 
Sbjct: 5   QIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAAT-YMALKNQLGVEEVEALLALLD 63

Query: 114 YMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTL 148
                F           +G   +T  +    +   
Sbjct: 64  QHPISFGRSETGDQLVFVGDVDITHPIRENEVTNH 98

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	239
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	100.0
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	100.0
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	100.0
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	100.0
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	100.0
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.92
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.82
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.8
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	99.45
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	99.25
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	99.17
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	98.76
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	98.48
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	98.13
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.89
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.88
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.81
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.8
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	97.8
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.79
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.73
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.71
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.63
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.63
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.61
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.61
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	97.57
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.56
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.55
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.54
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.51
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.5
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.48
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.47
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.45
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.43
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.42
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.39
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.36
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.35
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.33
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.32
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.31
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.3
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.3
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.27
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.25
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.24
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.24
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	97.24
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.23
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.23
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.23
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.22
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.21
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.15
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.12
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.12
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	97.12
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.11
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.11
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.1
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.09
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.08
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.07
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.04
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.03
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.03
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.98
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.98
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.98
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.97
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.97
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.97
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.96
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.94
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.94
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.9
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.89
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.87
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.85
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.85
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.85
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.84
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.83
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.82
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.81
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.79
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.78
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.75
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.74
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.74
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.74
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.73
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.73
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.73
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.73
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.71
d1okkd2	207	GTPase domain of the signal recognition particle r	96.69
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.69
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.68
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.67
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.67
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.66
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.62
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.62
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.61
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.6
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.55
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.55
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.54
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.54
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.54
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.54
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.54
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.54
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	96.52
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.52
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.51
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.49
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.48
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.48
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.47
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	96.47
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.46
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.45
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	96.45
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.44
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.43
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.43
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.42
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.41
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	96.41
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.41
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	96.4
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.4
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.4
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	96.37
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.31
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.3
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.3
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	96.27
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.26
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	96.25
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	96.24
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.22
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.21
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	96.2
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	96.2
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	96.19
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.18
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	96.18
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.17
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.15
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.15
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.14
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	96.13
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.13
d1xpua3	289	Transcription termination factor Rho, ATPase domai	96.12
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.11
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	96.11
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	96.1
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	96.08
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.08
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.06
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.06
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	96.04
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	96.03
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.02
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	96.02
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.01
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	96.0
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.95
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.95
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	95.94
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.91
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.88
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.86
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.82
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.8
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	95.77
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	95.72
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	95.7
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.59
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.57
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.57
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.54
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.45
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.44
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.37
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	95.32
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.28
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	95.27
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	95.23
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	95.21
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.09
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	95.03
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	94.97
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	94.79
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	94.77
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	94.76
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.75
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	94.7
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	94.69
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.62
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	94.61
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	94.44
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.42
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	94.32
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.3
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.15
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.14
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.04
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.72
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	93.66
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	93.53
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	93.43
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	93.24
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	93.17
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.06
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	92.99
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	92.76
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	92.71
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	92.68
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	92.6
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.5
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	92.42
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	92.05
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	92.03
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	91.81
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	90.94
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	90.57
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	89.84
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	89.83
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	89.8
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	89.7
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	89.65
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	89.49
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	89.29
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	88.98
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	88.82
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	88.81
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	88.64
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	88.46
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	88.41
d1tuea_	205	Replication protein E1 helicase domain {Human papi	86.51
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	85.68
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	85.53
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	85.49
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	85.39
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	84.14
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	83.77
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	82.36
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	81.86
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	81.11
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	80.64

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.3e-60  Score=391.91  Aligned_cols=201  Identities=23%  Similarity=0.321  Sum_probs=148.0

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEee
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFSQ   99 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~q   99 (239)
                      |+++||+++| ++..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.         ..+||+||
T Consensus         1 Iev~nv~k~y-g~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q   79 (232)
T d2awna2           1 VQLQNVTKAW-GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ   79 (232)
T ss_dssp             EEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECS
T ss_pred             CEEEEEEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeecc
Confidence            6899999999 4678999999999999999999999999999999999999999999998873         35999999


Q ss_pred             ccCCCCCCCCcHHHHHHH--hC----CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 026376          100 HHVDGLDLSSNPLLYMMR--CF----PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDE  173 (239)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDE  173 (239)
                      ++...  ...++.+++..  ..    .....+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||
T Consensus        80 ~~~l~--~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~-~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDE  156 (232)
T d2awna2          80 SYALY--PHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH-LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE  156 (232)
T ss_dssp             SCCC-----------------------CHHHHHHHHHHHHC----------------------CHHHHHHTCCSEEEEES
T ss_pred             ccccc--cchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChh-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            97432  22333333221  11    1123467899999999974 6789999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          174 PSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       174 Pt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      ||++||+.++..+++.+++    .+.|||+||||++++..+|||+++|++|+++ ..|+++++.+
T Consensus       157 Pts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv-~~G~~~el~~  220 (232)
T d2awna2         157 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVA-QVGKPLELYH  220 (232)
T ss_dssp             TTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEeCHHHHHh
Confidence            9999999998888776643    4779999999999999999999999999997 6899988754

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.3e-59  Score=391.34  Aligned_cols=202  Identities=22%  Similarity=0.314  Sum_probs=170.9

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEe
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS   98 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~   98 (239)
                      .|+++||+++| ++..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|++++.         ..+||+|
T Consensus         6 ~I~v~nlsk~y-g~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~   84 (239)
T d1v43a3           6 EVKLENLTKRF-GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF   84 (239)
T ss_dssp             CEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred             eEEEEEEEEEE-CCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEe
Confidence            48999999999 4678999999999999999999999999999999999999999999999874         2499999


Q ss_pred             eccCCCCCCCCcHHHHHHHhC--CCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 026376           99 QHHVDGLDLSSNPLLYMMRCF--PGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLD  172 (239)
Q Consensus        99 q~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllD  172 (239)
                      |++.  +....++.+++....  .+.+    .+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++||||
T Consensus        85 Q~~~--l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllD  161 (239)
T d1v43a3          85 QSYA--VWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEE-LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMD  161 (239)
T ss_dssp             C--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGG-GTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEE
T ss_pred             echh--hcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-hhcCChhhCCHHHHHHHHHHhhhccCCCceeec
Confidence            9974  333456666654221  1222    356788999999974 678999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          173 EPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       173 EPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |||++||+.++..+++.+.+    .+.|||+||||++++.++|||+++|++|+++ ..|+++++..
T Consensus       162 EPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv-~~G~~~el~~  226 (239)
T d1v43a3         162 EPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLL-QIGSPTEVYL  226 (239)
T ss_dssp             STTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence            99999999999888776654    3779999999999999999999999999997 6899988753

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=4.1e-59  Score=388.80  Aligned_cols=202  Identities=25%  Similarity=0.343  Sum_probs=172.9

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------------e
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------------V   92 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------------~   92 (239)
                      .|+++||+|+| ++..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|++++.               .
T Consensus         3 ~i~v~nl~k~y-g~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r   81 (240)
T d1g2912           3 GVRLVDVWKVF-GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR   81 (240)
T ss_dssp             EEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred             cEEEEeEEEEE-CCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccc
Confidence            58999999999 4677999999999999999999999999999999999999999999998763               2


Q ss_pred             EEEEEeeccCCCCCCCCcHHHHHHH--hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 026376           93 RIAVFSQHHVDGLDLSSNPLLYMMR--CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP  166 (239)
Q Consensus        93 ~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p  166 (239)
                      .+||+||++.  +....++.+++..  .....+    .+++.++++.+++.+ ..++++++|||||||||+|||||+.+|
T Consensus        82 ~ig~v~Q~~~--L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~-~~~~~p~~LSGGqkQRv~IAraL~~~P  158 (240)
T d1g2912          82 DIAMVFQSYA--LYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTE-LLNRKPRELSGGQRQRVALGRAIVRKP  158 (240)
T ss_dssp             SEEEECSCCC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGG-GTTCCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred             cceecccchh--hcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence            5999999974  3334455554431  111222    356889999999975 678899999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          167 HIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       167 ~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      ++|||||||+|||+.++..+++.+.+    .+.|||+||||++++..+|||+++|++|+++ ..|+++++.+
T Consensus       159 ~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv-~~G~~~el~~  229 (240)
T d1g2912         159 QVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQ-QVGSPDEVYD  229 (240)
T ss_dssp             SEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred             CEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence            99999999999999999888776643    3789999999999999999999999999997 6799988754

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=5.7e-59  Score=385.17  Aligned_cols=201  Identities=26%  Similarity=0.314  Sum_probs=173.2

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEe
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS   98 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~   98 (239)
                      ||+++||+|+|+ + .+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.         ..+||+|
T Consensus         1 mi~v~nlsk~y~-~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~   78 (229)
T d3d31a2           1 MIEIESLSRKWK-N-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVY   78 (229)
T ss_dssp             CEEEEEEEEECS-S-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEEC
T ss_pred             CEEEEEEEEEeC-C-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeec
Confidence            589999999994 3 5899999999999999999999999999999999999999999999874         2599999


Q ss_pred             eccCCCCCCCCcHHHHHH---HhCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 026376           99 QHHVDGLDLSSNPLLYMM---RCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPS  175 (239)
Q Consensus        99 q~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt  175 (239)
                      |++..  ....++.+++.   ........+++.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||||
T Consensus        79 Q~~~l--~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPt  155 (229)
T d3d31a2          79 QNYSL--FPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEH-LLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPL  155 (229)
T ss_dssp             TTCCC--CTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTT-TTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSS
T ss_pred             ccccc--CccccHHHHHHHHHhhccccHHHHHHHHHHHhcchh-hHhCChhhCCHHHhcchhhhhhhhccCCceeecCCC
Confidence            99743  33345554442   1122345678999999999975 678899999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          176 NHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       176 ~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      ++||+.++..+.+.+++    .+.|||+||||++++.++|||+++|++|+++ +.|+++++.+
T Consensus       156 s~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv-~~g~~~el~~  217 (229)
T d3d31a2         156 SALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLI-QVGKPEEIFE  217 (229)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEE-EEECHHHHHS
T ss_pred             cCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence            99999998887776643    3679999999999999999999999999997 7899998753

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.5e-59  Score=387.22  Aligned_cols=202  Identities=22%  Similarity=0.312  Sum_probs=172.3

Q ss_pred             eEEEEeeEEEcCCCC---ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------
Q 026376           28 IISFSDASFGYPGGP---ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------   91 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~---~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------   91 (239)
                      ||+++||++.|+++.   .+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.             
T Consensus         1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~   80 (240)
T d3dhwc1           1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA   80 (240)
T ss_dssp             CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred             CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhh
Confidence            689999999996442   5899999999999999999999999999999999999999999998874             


Q ss_pred             -eEEEEEeeccCCCCCCCCcHHHHHHH--hCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 026376           92 -VRIAVFSQHHVDGLDLSSNPLLYMMR--CFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK  164 (239)
Q Consensus        92 -~~~~~~~q~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~  164 (239)
                       ..+||+||++.  +....++.+++..  ...+.    ..+++.++|+.+|+.+ ..++++.+|||||||||+|||||+.
T Consensus        81 rr~ig~VfQ~~~--l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~-~~~~~~~~LSGG~~QRvaiAraL~~  157 (240)
T d3dhwc1          81 RRQIGMIFQHFN--LLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD-KHDSYPSNLSGGQKQRVAIARALAS  157 (240)
T ss_dssp             HHHEEECCSSCC--CCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTT-TTSSCBSCCCHHHHHHHHHHHHHHT
T ss_pred             hccccccccccc--cCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHhhhhcc
Confidence             24999999973  3334455555432  11111    2467889999999975 5688999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      +|++|||||||++||+.++..+++.|++    .+.|||+||||++++..+|||+++|++|+++ +.|+++++.
T Consensus       158 ~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv-~~G~~~ei~  229 (240)
T d3dhwc1         158 NPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELI-EQDTVSEVF  229 (240)
T ss_dssp             CCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEE-EEEETTTTT
T ss_pred             CCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence            9999999999999999999888776654    3779999999999999999999999999997 678887764

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=1.1e-58  Score=386.02  Aligned_cols=203  Identities=24%  Similarity=0.322  Sum_probs=173.8

Q ss_pred             eEEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc--------------e
Q 026376           28 IISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK--------------V   92 (239)
Q Consensus        28 ~l~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------~   92 (239)
                      .|+++||++.|+. ...+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.              .
T Consensus         3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr   82 (242)
T d1oxxk2           3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR   82 (242)
T ss_dssp             CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred             EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhc
Confidence            4899999999963 356899999999999999999999999999999999999999999998763              2


Q ss_pred             EEEEEeeccCCCCCCCCcHHHHHHHh--CCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 026376           93 RIAVFSQHHVDGLDLSSNPLLYMMRC--FPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKP  166 (239)
Q Consensus        93 ~~~~~~q~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p  166 (239)
                      ++||+||++.  +....++.+++...  ....+    ++++.++++.+++. ...++++++|||||||||+|||||+.+|
T Consensus        83 ~ig~vfQ~~~--L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~p~~LSGGqkQRvaiARaL~~~P  159 (242)
T d1oxxk2          83 KIGMVFQTWA--LYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH-HVLNHFPRELSGAQQQRVALARALVKDP  159 (242)
T ss_dssp             CEEEEETTSC--CCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             cceEEecccc--ccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChH-hhhhCChhhCCHHHHhHHHHHhHHhhcc
Confidence            5999999874  33345666665421  11222    35688999999997 4678999999999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          167 HIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       167 ~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      ++|||||||++||+.++..+++.+++    .+.|||+||||++++.++|||+++|++|+++ ..|+++++.+
T Consensus       160 ~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv-~~g~~~el~~  230 (242)
T d1oxxk2         160 SLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLV-QVGKPEDLYD  230 (242)
T ss_dssp             SEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred             cceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence            99999999999999998888776643    3779999999999999999999999999997 6899988754

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=3e-58  Score=381.62  Aligned_cols=197  Identities=26%  Similarity=0.344  Sum_probs=165.3

Q ss_pred             eEEEEeeEEEcCCCC---ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-------------
Q 026376           28 IISFSDASFGYPGGP---ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-------------   91 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~---~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------   91 (239)
                      ||+++||+|.|+.+.   .+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|++++.             
T Consensus         1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~   80 (230)
T d1l2ta_           1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI   80 (230)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred             CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchh
Confidence            689999999996432   3799999999999999999999999999999999999999999998874             


Q ss_pred             --eEEEEEeeccCCCCCCCCcHHHHHHH--hC---CCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHH
Q 026376           92 --VRIAVFSQHHVDGLDLSSNPLLYMMR--CF---PGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAK  160 (239)
Q Consensus        92 --~~~~~~~q~~~~~~~~~~~~~~~~~~--~~---~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~lar  160 (239)
                        ..+||+||++.  +....++.+++..  ..   ...+    .+++.++|+.+++.+...++++.+|||||||||+|||
T Consensus        81 r~~~ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAr  158 (230)
T d1l2ta_          81 RRDKIGFVFQQFN--LIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIAR  158 (230)
T ss_dssp             HHHHEEEECTTCC--CCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred             hcceEEEEecchh--hCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHh
Confidence              14999999974  3334455554431  11   1222    3467788999999765678889999999999999999


Q ss_pred             HhccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCC
Q 026376          161 ITFKKPHIILLDEPSNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGT  228 (239)
Q Consensus       161 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~  228 (239)
                      ||+.+|++|||||||++||+.++..+++.+++    .+.|||+||||++++ ++|||+++|++|+|+ .+|+
T Consensus       159 aL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a-~~~drv~~m~~G~Iv-~~g~  228 (230)
T d1l2ta_         159 ALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVE-REEK  228 (230)
T ss_dssp             HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH-TTSSEEEEEETTEEE-EEEE
T ss_pred             hhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHH-HhCCEEEEEECCEEE-Eecc
Confidence            99999999999999999999999988877754    367999999999987 699999999999997 4554

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=4.4e-57  Score=381.39  Aligned_cols=203  Identities=23%  Similarity=0.325  Sum_probs=171.9

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce---------------
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV---------------   92 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~---------------   92 (239)
                      .|+++||+|+| ++..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+++..               
T Consensus         2 ~Lev~nl~k~y-g~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~   80 (258)
T d1b0ua_           2 KLHVIDLHKRY-GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD   80 (258)
T ss_dssp             CEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred             eEEEEEEEEEE-CCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhccccc
Confidence            48999999999 45679999999999999999999999999999999999999999999987632               


Q ss_pred             ---------EEEEEeeccCCCCCCCCcHHHHHHH---hCCCCc----HHHHHHHHHhcCCCcccccCCCCCCChHHHHHH
Q 026376           93 ---------RIAVFSQHHVDGLDLSSNPLLYMMR---CFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRV  156 (239)
Q Consensus        93 ---------~~~~~~q~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv  156 (239)
                               ++||+||++.  +....++.+++..   .....+    .+++.++++.+++.+...++++.+|||||||||
T Consensus        81 ~~~~~~~r~~ig~vfQ~~~--l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv  158 (258)
T d1b0ua_          81 KNQLRLLRTRLTMVFQHFN--LWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRV  158 (258)
T ss_dssp             HHHHHHHHHHEEEECSSCC--CCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHH
T ss_pred             HhHHHHHhcceEEEEechh--hccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHH
Confidence                     4899999974  3333455444321   122222    356788999999986556778899999999999


Q ss_pred             HHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          157 AFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       157 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~---~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      +|||||+.+|++|||||||+|||+.++..+++.++   +.+.|||+||||++++..+||||++|++|+++ +.|+++++.
T Consensus       159 ~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv-~~g~~~ev~  237 (258)
T d1b0ua_         159 SIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE-EEGDPEQVF  237 (258)
T ss_dssp             HHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred             HHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence            99999999999999999999999999888777665   44679999999999999999999999999997 689988864


Q ss_pred             H
Q 026376          234 K  234 (239)
Q Consensus       234 ~  234 (239)
                      .
T Consensus       238 ~  238 (258)
T d1b0ua_         238 G  238 (258)
T ss_dssp             H
T ss_pred             h
Confidence            3

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=5.2e-57  Score=377.57  Aligned_cols=203  Identities=19%  Similarity=0.256  Sum_probs=168.6

Q ss_pred             CCeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce------------E
Q 026376           26 PPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------------R   93 (239)
Q Consensus        26 ~~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------------~   93 (239)
                      +.+|+++||+++| ++..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++..            .
T Consensus         4 d~~Lev~~l~k~y-g~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g   82 (240)
T d1ji0a_           4 DIVLEVQSLHVYY-GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG   82 (240)
T ss_dssp             SEEEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred             ceEEEEeeEEEEE-CCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhc
Confidence            5689999999999 46679999999999999999999999999999999999999999999998742            3


Q ss_pred             EEEEeeccCCCCCCCCcHHHHHHHh-CC--CC--cHHHHHHHHHhc-CCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 026376           94 IAVFSQHHVDGLDLSSNPLLYMMRC-FP--GV--PEQKLRAHLGSF-GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH  167 (239)
Q Consensus        94 ~~~~~q~~~~~~~~~~~~~~~~~~~-~~--~~--~~~~~~~~l~~~-~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~  167 (239)
                      ++|++|+...  ....++.+++... ..  ..  ..+++.++++.+ ++. ...++++++|||||||||+|||||+.+|+
T Consensus        83 i~~~~q~~~l--~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~LSGG~~Qrv~iAraL~~~P~  159 (240)
T d1ji0a_          83 IALVPEGRRI--FPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLK-ERLKQLGGTLSGGEQQMLAIGRALMSRPK  159 (240)
T ss_dssp             EEEECSSCCC--CTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHH-TTTTSBSSSSCHHHHHHHHHHHHHTTCCS
T ss_pred             ccccCccccc--CCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChH-HHHhCchhhCCHHHHHHHHHHHHHHhCCC
Confidence            8999998642  2334555554321 11  11  123455566655 454 45678999999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          168 IILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       168 llllDEPt~~LD~~~~~~l~~~l~---~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      +|||||||+|||+.++.++++.++   +.+.|||++|||++++.++|||+++|++|+++ +.|+++++.
T Consensus       160 lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv-~~g~~~el~  227 (240)
T d1ji0a_         160 LLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIV-LEGKASELL  227 (240)
T ss_dssp             EEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEE-EEEEHHHHH
T ss_pred             EeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHh
Confidence            999999999999999888877665   44679999999999999999999999999997 789999875

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.3e-56  Score=374.54  Aligned_cols=205  Identities=21%  Similarity=0.291  Sum_probs=172.4

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc----------eEEEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK----------VRIAVF   97 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~~~~~   97 (239)
                      .|+++||+++| +++.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.+++.          ..++|+
T Consensus         2 aI~v~nl~k~y-g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~v   80 (238)
T d1vpla_           2 AVVVKDLRKRI-GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYL   80 (238)
T ss_dssp             CEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEE
T ss_pred             CEEEEeEEEEE-CCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEe
Confidence            48899999999 5678999999999999999999999999999999999999999999998774          359999


Q ss_pred             eeccCCCCCCCCcHHHHHH---HhCCCC---cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 026376           98 SQHHVDGLDLSSNPLLYMM---RCFPGV---PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILL  171 (239)
Q Consensus        98 ~q~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llll  171 (239)
                      ||.....  ...+..+++.   ..+...   ..+.++.+++.+++.+ ..++++++||||||||++|||||+.+|++|||
T Consensus        81 pq~~~~~--~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~lSgG~~qrv~iA~al~~~p~illL  157 (238)
T d1vpla_          81 PEEAGAY--RNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGE-KIKDRVSTYSKGMVRKLLIARALMVNPRLAIL  157 (238)
T ss_dssp             CTTCCCC--TTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGG-GGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             eeccccC--CCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHH-HHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence            9986332  2334443331   111111   1345677888999974 56788999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHHhh
Q 026376          172 DEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKMLQ  237 (239)
Q Consensus       172 DEPt~~LD~~~~~~l~~~l~---~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~~~  237 (239)
                      ||||+|||+.++..+.+.++   +.+.|||++|||++++..+||||++|++|+++ +.|+++++.+...
T Consensus       158 DEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv-~~g~~~el~~~~~  225 (238)
T d1vpla_         158 DEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIV-ETGTVEELKERYK  225 (238)
T ss_dssp             ESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEE-EEEEHHHHHHHTT
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHhccC
Confidence            99999999999888777664   44679999999999999999999999999997 7899999876543

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.4e-56  Score=378.26  Aligned_cols=204  Identities=19%  Similarity=0.223  Sum_probs=170.8

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce------------EE
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV------------RI   94 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------------~~   94 (239)
                      .+|+++||+++|+ +..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.+++..            .+
T Consensus         3 ~iL~v~nlsk~yg-~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi   81 (254)
T d1g6ha_           3 EILRTENIVKYFG-EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI   81 (254)
T ss_dssp             EEEEEEEEEEEET-TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred             ceEEEEEEEEEEC-CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcC
Confidence            3799999999994 5679999999999999999999999999999999999999999999998742            49


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHH---------------hCC-CCc---HHHHHHHHHhcCCCcccccCCCCCCChHHHHH
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMR---------------CFP-GVP---EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR  155 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~---------------~~~-~~~---~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr  155 (239)
                      +|+||++...  ...+..+++..               ... ...   .+++.++++.+++.. ..++++++||||||||
T Consensus        82 ~~v~Q~~~~~--~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~Qr  158 (254)
T d1g6ha_          82 VRTFQTPQPL--KEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH-LYDRKAGELSGGQMKL  158 (254)
T ss_dssp             EECCCCCGGG--GGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGG-GTTSBGGGSCHHHHHH
T ss_pred             CccCCccccC--CCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcch-hccCchhhCCcHHHHH
Confidence            9999987422  22344444321               000 111   245778899999974 5788999999999999


Q ss_pred             HHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHH
Q 026376          156 VAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDY  232 (239)
Q Consensus       156 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~---~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~  232 (239)
                      |+|||||+.+|++|||||||+|||+.++..+.+.++   +.+.|||+||||++++.++||||++|++|+++ ..|+++|.
T Consensus       159 v~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv-~~g~~~e~  237 (254)
T d1g6ha_         159 VEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII-AEGRGEEE  237 (254)
T ss_dssp             HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE-EEEESHHH
T ss_pred             HHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEE-EEecHHHH
Confidence            999999999999999999999999999888776654   45779999999999999999999999999997 67998876


Q ss_pred             HHH
Q 026376          233 KKM  235 (239)
Q Consensus       233 ~~~  235 (239)
                      .+.
T Consensus       238 ~~~  240 (254)
T d1g6ha_         238 IKN  240 (254)
T ss_dssp             HHH
T ss_pred             hhc
Confidence            543

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=4.5e-56  Score=372.31  Aligned_cols=202  Identities=22%  Similarity=0.355  Sum_probs=165.8

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV   96 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~   96 (239)
                      ||+++||+|+|++++.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+++.           ..++|
T Consensus         1 mle~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~   80 (242)
T d1mv5a_           1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF   80 (242)
T ss_dssp             CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred             CEEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEE
Confidence            5899999999976667999999999999999999999999999999999999999999998874           25899


Q ss_pred             EeeccCCCCCCCCcHHHHHHHh-CCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhccC
Q 026376           97 FSQHHVDGLDLSSNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKK  165 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~~~  165 (239)
                      ++|++..   +..+..+++... ........+.++++..++.....          ...+.+|||||||||+|||||+.+
T Consensus        81 v~Q~~~l---f~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~  157 (242)
T d1mv5a_          81 VSQDSAI---MAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRN  157 (242)
T ss_dssp             ECCSSCC---CCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred             Ecccccc---CCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence            9998742   334566654322 12234556666666555432211          123467999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          166 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       166 p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |+|||||||||+||+.+...+++.+++.  +.|||+||||++.+. .||+|++|++|+++ +.|+++++.+
T Consensus       158 p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~i~vl~~G~iv-~~G~~~eLl~  226 (242)
T d1mv5a_         158 PKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQIT-GSGKHNELVA  226 (242)
T ss_dssp             CSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEEC-CCSCHHHHHH
T ss_pred             CCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence            9999999999999999888887777654  679999999999886 59999999999997 7899998754

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7e-55  Score=364.49  Aligned_cols=202  Identities=24%  Similarity=0.421  Sum_probs=168.9

Q ss_pred             EEEEeeEEEcCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEEE
Q 026376           29 ISFSDASFGYPG-GPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIAV   96 (239)
Q Consensus        29 l~~~~l~~~y~~-~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~~   96 (239)
                      |+++||+|+|++ .+.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+++.           ..++|
T Consensus         2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~   81 (241)
T d2pmka1           2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV   81 (241)
T ss_dssp             EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred             eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEE
Confidence            789999999964 356999999999999999999999999999999999999999999999874           35999


Q ss_pred             EeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcc----------cccCCCCCCChHHHHHHHHHHHhccCC
Q 026376           97 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITFKKP  166 (239)
Q Consensus        97 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkqrv~laral~~~p  166 (239)
                      ++|++..   +..+..+++....+....+++.++++..++.+.          .....+..|||||||||+|||||+.+|
T Consensus        82 v~Q~~~l---f~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p  158 (241)
T d2pmka1          82 VLQDNVL---LNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP  158 (241)
T ss_dssp             ECSSCCC---TTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred             Eeccccc---CCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhccc
Confidence            9999742   345777776543334556666666665554211          123456899999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376          167 HIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  235 (239)
Q Consensus       167 ~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  235 (239)
                      +|||||||||+||+.+...+++.+.+.  +.|+|+||||++.+. .||+|++|++|+|+ ..|+++++...
T Consensus       159 ~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~i~vl~~G~Iv-~~G~~~ell~~  227 (241)
T d2pmka1         159 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKIV-EQGKHKELLSE  227 (241)
T ss_dssp             SEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEETTEEE-EEECHHHHHHS
T ss_pred             chhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH-hCCEEEEEECCEEE-EECCHHHHHhC
Confidence            999999999999999999998888764  569999999999885 69999999999997 67999987653

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=3e-54  Score=363.36  Aligned_cols=203  Identities=24%  Similarity=0.337  Sum_probs=168.2

Q ss_pred             eEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEE
Q 026376           28 IISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA   95 (239)
Q Consensus        28 ~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~   95 (239)
                      -|+++||+|+|+++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+++.           ..++
T Consensus        13 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~   92 (253)
T d3b60a1          13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVA   92 (253)
T ss_dssp             CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEE
T ss_pred             EEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEE
Confidence            49999999999754 46999999999999999999999999999999999999999999999874           2599


Q ss_pred             EEeeccCCCCCCCCcHHHHHHHh-CCCCcHHHHHHHHHhcCCCcc----------cccCCCCCCChHHHHHHHHHHHhcc
Q 026376           96 VFSQHHVDGLDLSSNPLLYMMRC-FPGVPEQKLRAHLGSFGVTGN----------LALQPMYTLSGGQKSRVAFAKITFK  164 (239)
Q Consensus        96 ~~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkqrv~laral~~  164 (239)
                      |++|++..   +..+...+.... ....+.+++.++++..++.+.          .....+.+|||||||||+|||||+.
T Consensus        93 ~v~Q~~~l---~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~  169 (253)
T d3b60a1          93 LVSQNVHL---FNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR  169 (253)
T ss_dssp             EECSSCCC---CSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred             EEeecccc---CCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhc
Confidence            99998742   233454444322 223456677777766654321          1234567899999999999999999


Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  235 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  235 (239)
                      +|+|||||||||+||+.+...+++.|++.  +.|||+||||++.+. .||+|++|++|+|+ ..|+++++.+.
T Consensus       170 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~v~vl~~G~Iv-~~G~~~eLl~~  240 (253)
T d3b60a1         170 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIV-ERGTHSELLAQ  240 (253)
T ss_dssp             CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEE-EEECHHHHHHH
T ss_pred             CCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHH-hCCEEEEEECCEEE-EECCHHHHHhC
Confidence            99999999999999999999998888754  679999999999885 69999999999997 68999998654

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-53  Score=359.34  Aligned_cols=202  Identities=24%  Similarity=0.404  Sum_probs=163.4

Q ss_pred             eEEEEeeEEEcCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEE
Q 026376           28 IISFSDASFGYPGG--PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRI   94 (239)
Q Consensus        28 ~l~~~~l~~~y~~~--~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~   94 (239)
                      .|+++||+|+|++.  ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.           ..+
T Consensus        11 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i   90 (251)
T d1jj7a_          11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQV   90 (251)
T ss_dssp             CEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHE
T ss_pred             eEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHHh
Confidence            59999999999753  35899999999999999999999999999999999999999999999874           359


Q ss_pred             EEEeeccCCCCCCCCcHHHHHHHhC-CCCcHHHHHH---------HHHhc--CCCcccccCCCCCCChHHHHHHHHHHHh
Q 026376           95 AVFSQHHVDGLDLSSNPLLYMMRCF-PGVPEQKLRA---------HLGSF--GVTGNLALQPMYTLSGGQKSRVAFAKIT  162 (239)
Q Consensus        95 ~~~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~~LSgGqkqrv~laral  162 (239)
                      +|++|++..   +..+...++.... .........+         .++.+  ++. ...++.+.+|||||||||+|||||
T Consensus        91 ~~v~Q~~~l---f~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-~~i~~~~~~LSGGqkQRvaiARal  166 (251)
T d1jj7a_          91 AAVGQEPQV---FGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYD-TEVDEAGSQLSGGQRQAVALARAL  166 (251)
T ss_dssp             EEECSSCCC---CSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGG-CBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred             hhccccccc---cCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccch-hhHhccCccCChhHceEEEEeecc
Confidence            999999742   2345666654321 1222222222         23332  222 223456789999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376          163 FKKPHIILLDEPSNHLDLDAVEALIQGLVLF----QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  235 (239)
Q Consensus       163 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~----~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  235 (239)
                      +.+|+||||||||++||+.+...+++.+.+.    +.|||+||||++.+. .||||++|++|+|+ ..|+++++.+.
T Consensus       167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~-~aDrI~vl~~G~iv-~~Gt~~eLl~~  241 (251)
T d1jj7a_         167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVE-QADHILFLEGGAIR-EGGTHQQLMEK  241 (251)
T ss_dssp             TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHH-TCSEEEEEETTEEE-EEECHHHHHHH
T ss_pred             ccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-EECCHHHHHhC
Confidence            9999999999999999999999998888643    569999999999886 59999999999997 68999998654

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=3.1e-54  Score=358.45  Aligned_cols=198  Identities=26%  Similarity=0.383  Sum_probs=166.7

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc---------eEEEEEe
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK---------VRIAVFS   98 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---------~~~~~~~   98 (239)
                      .|++ ++.++|+ +. .+ ||||++. +|+++|+||||||||||+|+|+|+++|++|+|++++.         ..+||+|
T Consensus         2 ~l~v-~~~k~~g-~~-~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~   76 (240)
T d2onka1           2 FLKV-RAEKRLG-NF-RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVP   76 (240)
T ss_dssp             CEEE-EEEEEET-TE-EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCC
T ss_pred             EEEE-EEEEEEC-CE-EE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeec
Confidence            4777 6789994 43 34 7999995 6899999999999999999999999999999998874         3699999


Q ss_pred             eccCCCCCCCCcHHHHHHHhCCCC----cHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 026376           99 QHHVDGLDLSSNPLLYMMRCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEP  174 (239)
Q Consensus        99 q~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEP  174 (239)
                      |++.  +....++.+++.......    ..+++.++++.+|+.+ ..++++.+|||||||||+|||||+.+|++||||||
T Consensus        77 Q~~~--l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~-~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEP  153 (240)
T d2onka1          77 QDYA--LFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAH-LLDRKPARLSGGERQRVALARALVIQPRLLLLDEP  153 (240)
T ss_dssp             SSCC--CCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTT-TTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEEST
T ss_pred             cchh--hcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHh-hhhCChhhCCHHHHHHHHHHHHHhccCCceEecCc
Confidence            9864  333456666664322222    2356889999999975 67899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHhh----cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          175 SNHLDLDAVEALIQGLVL----FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       175 t~~LD~~~~~~l~~~l~~----~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |+|||+.++..+.+.+++    .+.|||+||||++++.++|||+++|++|+++ +.|+++++.+
T Consensus       154 ts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii-~~G~~~el~~  216 (240)
T d2onka1         154 LSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIV-EKGKLKELFS  216 (240)
T ss_dssp             TSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE-EEecHHHHhc
Confidence            999999999888777654    3679999999999999999999999999997 6899988753

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=1.1e-53  Score=359.87  Aligned_cols=203  Identities=24%  Similarity=0.384  Sum_probs=172.3

Q ss_pred             eEEEEeeEEEcCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc-----------eEEE
Q 026376           28 IISFSDASFGYPGG-PILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK-----------VRIA   95 (239)
Q Consensus        28 ~l~~~~l~~~y~~~-~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~~~   95 (239)
                      .|+++||+|+|+++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+++.           ..++
T Consensus        16 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~   95 (255)
T d2hyda1          16 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIG   95 (255)
T ss_dssp             CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEE
T ss_pred             EEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhheee
Confidence            49999999999754 46999999999999999999999999999999999999999999999874           3599


Q ss_pred             EEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhcCCCcccc----------cCCCCCCChHHHHHHHHHHHhccC
Q 026376           96 VFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKK  165 (239)
Q Consensus        96 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~laral~~~  165 (239)
                      |++|++..   +..+..+++....+....+++.++++.+++.+...          .....+||||||||++|||||+++
T Consensus        96 ~v~Q~~~l---f~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~  172 (255)
T d2hyda1          96 LVQQDNIL---FSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNN  172 (255)
T ss_dssp             EECSSCCC---CSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHC
T ss_pred             eeeccccC---CCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcC
Confidence            99998742   34577777754444456777888888877643221          123467999999999999999999


Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHHH
Q 026376          166 PHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKKM  235 (239)
Q Consensus       166 p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~  235 (239)
                      |+|||||||||+||+.+...+++.+.+.  +.|+|+||||++.+. .||+|++|++|+++ ..|+++++.+.
T Consensus       173 p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~-~~D~ii~l~~G~iv-~~G~~~eLl~~  242 (255)
T d2hyda1         173 PPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT-HADKIVVIENGHIV-ETGTHRELIAK  242 (255)
T ss_dssp             CSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT-TCSEEEEEETTEEE-EEECHHHHHHT
T ss_pred             CCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-EECCHHHHHhC
Confidence            9999999999999999999999988754  569999999999885 69999999999997 67999987653

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.6e-51  Score=339.95  Aligned_cols=197  Identities=24%  Similarity=0.324  Sum_probs=163.2

Q ss_pred             CeEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCce-----------EEE
Q 026376           27 PIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKV-----------RIA   95 (239)
Q Consensus        27 ~~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-----------~~~   95 (239)
                      .+|+++||+++|     .|+||||+|++||++||+||||||||||+++|+|+. |++|+|.+++..           ..+
T Consensus         2 ~il~~~dv~~~~-----~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~   75 (231)
T d1l7vc_           2 IVMQLQDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA   75 (231)
T ss_dssp             EEEEEEEECCTT-----TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred             eEEEEECcccCc-----eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhce
Confidence            478999997655     589999999999999999999999999999999975 689999988742           378


Q ss_pred             EEeeccCCCCCCCCcHHHHHHH-hCCCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc-------CCC
Q 026376           96 VFSQHHVDGLDLSSNPLLYMMR-CFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK-------KPH  167 (239)
Q Consensus        96 ~~~q~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~-------~p~  167 (239)
                      |++|+....  +..+....+.. .......+.+.++++.+++.+ ..++++.+|||||||||+|||||++       +|+
T Consensus        76 ~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~  152 (231)
T d1l7vc_          76 YLSQQQTPP--FATPVWHYLTLHQHDKTRTELLNDVAGALALDD-KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQ  152 (231)
T ss_dssp             EECSCCCCC--SSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTT-TTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCC
T ss_pred             eeeccccCC--ccccHHHHhhhccchhhHHHHHHHHHHhcCCHh-HhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCC
Confidence            998875432  22333333322 222344667888999999975 4678899999999999999999997       779


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHh---hcCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHH
Q 026376          168 IILLDEPSNHLDLDAVEALIQGLV---LFQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYK  233 (239)
Q Consensus       168 llllDEPt~~LD~~~~~~l~~~l~---~~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  233 (239)
                      ||||||||+|||+.++..+.+.++   +.+.|||+||||++++..+|||+++|++|+++ +.|+++++.
T Consensus       153 llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv-~~G~~~ev~  220 (231)
T d1l7vc_         153 LLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKML-ASGRREEVL  220 (231)
T ss_dssp             EEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEEC-CCSBHHHHS
T ss_pred             EEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEE-EECCHHHHh
Confidence            999999999999998887766554   45779999999999999999999999999997 789998874

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.4e-49  Score=335.37  Aligned_cols=195  Identities=25%  Similarity=0.408  Sum_probs=153.6

Q ss_pred             EEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCC
Q 026376           29 ISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLS  108 (239)
Q Consensus        29 l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~  108 (239)
                      +.++|+++  . ++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+++  +++|++|++..   +.
T Consensus        39 i~~~~~~~--~-g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g--~i~~v~Q~~~l---~~  110 (281)
T d1r0wa_          39 VSFSHLCL--V-GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG--RVSFCSQFSWI---MP  110 (281)
T ss_dssp             -CHHHHHH--T-TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS--CEEEECSSCCC---CS
T ss_pred             EEEEEcCC--C-CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC--EEEEEeccccc---cC
Confidence            44555543  2 35799999999999999999999999999999999999999999999887  48999998642   23


Q ss_pred             CcHHHHHHHhCCCCcHHHHHHHHHhcCCCc----------ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 026376          109 SNPLLYMMRCFPGVPEQKLRAHLGSFGVTG----------NLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL  178 (239)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~L  178 (239)
                      .+...++... .........++++...+..          ....+...+|||||||||+|||||+++|+||||||||++|
T Consensus       111 ~tv~eni~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~L  189 (281)
T d1r0wa_         111 GTIKENIIFG-VSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYL  189 (281)
T ss_dssp             EEHHHHHTTT-SCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSS
T ss_pred             ceeecccccc-ccccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccC
Confidence            4566655322 1233444455544443311          1123446789999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHH-hh--cCCEEEEEecCHHHHhhhcCeEEEEeCCeEEeeCCChhHHHH
Q 026376          179 DLDAVEALIQGL-VL--FQGGILMVSHDEHLISGSVEELWVVSEGKATPFHGTFHDYKK  234 (239)
Q Consensus       179 D~~~~~~l~~~l-~~--~~~tii~vsHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~  234 (239)
                      |+.+...+++.+ ..  .+.|+|+|||+++.+. .||||++|++|+++ +.|+++++..
T Consensus       190 D~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~-~aDrI~vl~~G~i~-~~Gt~~eL~~  246 (281)
T d1r0wa_         190 DVFTEEQVFESCVCKLMANKTRILVTSKMEHLR-KADKILILHQGSSY-FYGTFSELQS  246 (281)
T ss_dssp             CHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHH-TCSEEEEEETTEEE-EEECHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhCCCEEEEEechHHHHH-hCCEEEEEECCEEE-EECCHHHHhc
Confidence            999999888764 32  2569999999998875 79999999999997 6899998865

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=4e-48  Score=315.60  Aligned_cols=182  Identities=22%  Similarity=0.344  Sum_probs=145.3

Q ss_pred             eEEEEeeEEEcCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCc------eEEEEEeecc
Q 026376           28 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAK------VRIAVFSQHH  101 (239)
Q Consensus        28 ~l~~~~l~~~y~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------~~~~~~~q~~  101 (239)
                      .|+++||+++|+  +++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.      ..++|++|+.
T Consensus         2 ~lev~~ls~~y~--~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~   79 (200)
T d1sgwa_           2 KLEIRDLSVGYD--KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEI   79 (200)
T ss_dssp             EEEEEEEEEESS--SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSC
T ss_pred             eEEEEEEEEEeC--CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeecc
Confidence            489999999993  46899999999999999999999999999999999999999999999874      3689999986


Q ss_pred             CCCCCCCCcHHHHH---HHhC-CCCcHHHHHHHHHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 026376          102 VDGLDLSSNPLLYM---MRCF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNH  177 (239)
Q Consensus       102 ~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~  177 (239)
                      .....+  +...++   ...+ .....+++.++++.+++.+ . ++++.+||||||||++|||||+.+|++|||||||+|
T Consensus        80 ~~~~~~--t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~g  155 (200)
T d1sgwa_          80 IVPRKI--SVEDYLKAVASLYGVKVNKNEIMDALESVEVLD-L-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVA  155 (200)
T ss_dssp             CCCTTS--BHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC-T-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTT
T ss_pred             cCCCCc--CHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcc-c-ccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccc
Confidence            433222  322222   1222 2345677888999988753 3 467899999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhhc---CC-EEEEEecCHHHHhhhcCeEEEEeC
Q 026376          178 LDLDAVEALIQGLVLF---QG-GILMVSHDEHLISGSVEELWVVSE  219 (239)
Q Consensus       178 LD~~~~~~l~~~l~~~---~~-tii~vsHd~~~~~~~~d~i~~l~~  219 (239)
                      ||+.++..+++.+.+.   ++ +||.++|++    .+||++.+|++
T Consensus       156 LD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l----~~~D~~~~l~~  197 (200)
T d1sgwa_         156 IDEDSKHKVLKSILEILKEKGIVIISSREEL----SYCDVNENLHK  197 (200)
T ss_dssp             SCTTTHHHHHHHHHHHHHHHSEEEEEESSCC----TTSSEEEEGGG
T ss_pred             cCHHHHHHHHHHHHHHHhCCCEEEEEEechh----hhcchhhheee
Confidence            9999988887766543   33 444445554    47999988753

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.82  E-value=1.1e-22  Score=159.62  Aligned_cols=150  Identities=14%  Similarity=0.109  Sum_probs=99.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceE------EEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHH
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVR------IAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH  130 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~------~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (239)
                      .++|+||||||||||+++|+|.++|+.|.+...+...      .++..+.....    .....   ........     .
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~-----~   69 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGK----KKIFS---SKFFTSKK-----L   69 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCC----EEEEE---ETTCCCSS-----E
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHH----HHHHh---hhhhhhhh-----h
Confidence            4899999999999999999999999999987654221      12111110000    00000   00000000     0


Q ss_pred             HHhcCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC--CHHHHHHHHHHHhhcCCEEEEEecCHHHHh
Q 026376          131 LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL--DLDAVEALIQGLVLFQGGILMVSHDEHLIS  208 (239)
Q Consensus       131 l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~L--D~~~~~~l~~~l~~~~~tii~vsHd~~~~~  208 (239)
                      ....+.     +....++|+|+++|.++++++..+|+++++|||....  +......+.+.+.+.+.++|+++|+... .
T Consensus        70 ~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~~~-~  143 (178)
T d1ye8a1          70 VGSYGV-----NVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDV-H  143 (178)
T ss_dssp             ETTEEE-----CHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCC-S
T ss_pred             hhhhhc-----CcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEEEccHHH-H
Confidence            011111     1122358899999999999999999999999986443  4455666777777777899999999865 4


Q ss_pred             hhcCeEEEEeCCeEEe
Q 026376          209 GSVEELWVVSEGKATP  224 (239)
Q Consensus       209 ~~~d~i~~l~~G~i~~  224 (239)
                      .+|++++.+.+|++..
T Consensus       144 ~~~~~i~~~~~~~i~~  159 (178)
T d1ye8a1         144 PLVKEIRRLPGAVLIE  159 (178)
T ss_dssp             HHHHHHHTCTTCEEEE
T ss_pred             HhhceEEEEeCCEEEE
Confidence            5789999999999863

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.45  E-value=1.1e-12  Score=110.30  Aligned_cols=76  Identities=24%  Similarity=0.321  Sum_probs=62.2

Q ss_pred             CCCCCChHHHHHHHHHHHh----ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CCEEEEEecCHHHHhhhcCeEEE-
Q 026376          144 PMYTLSGGQKSRVAFAKIT----FKKPHIILLDEPSNHLDLDAVEALIQGLVLF--QGGILMVSHDEHLISGSVEELWV-  216 (239)
Q Consensus       144 ~~~~LSgGqkqrv~laral----~~~p~llllDEPt~~LD~~~~~~l~~~l~~~--~~tii~vsHd~~~~~~~~d~i~~-  216 (239)
                      ....+|+|||+...++..+    ...+.++++|||-++|+|.....+.+.+++.  +.-||++||.+.++. .+|+++. 
T Consensus       216 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~-~~d~~~~v  294 (308)
T d1e69a_         216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVME-AADLLHGV  294 (308)
T ss_dssp             BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGG-GCSEEEEE
T ss_pred             hhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHH-hcccEEEE
Confidence            3567999999988776653    4578999999999999999999999988764  346999999999886 5798865 


Q ss_pred             -EeCC
Q 026376          217 -VSEG  220 (239)
Q Consensus       217 -l~~G  220 (239)
                       +++|
T Consensus       295 ~~~~g  299 (308)
T d1e69a_         295 TMVNG  299 (308)
T ss_dssp             EESSS
T ss_pred             EEeCC
Confidence             5556

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.17  E-value=4.3e-11  Score=104.11  Aligned_cols=73  Identities=23%  Similarity=0.330  Sum_probs=60.1

Q ss_pred             CCCCCChHHHHHHHHHHHh----ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CCEEEEEecCHHHHhhhcCeEEE
Q 026376          144 PMYTLSGGQKSRVAFAKIT----FKKPHIILLDEPSNHLDLDAVEALIQGLVLF---QGGILMVSHDEHLISGSVEELWV  216 (239)
Q Consensus       144 ~~~~LSgGqkqrv~laral----~~~p~llllDEPt~~LD~~~~~~l~~~l~~~---~~tii~vsHd~~~~~~~~d~i~~  216 (239)
                      +...||||||.+++||-.+    ..++++++||||+++||+..+..+.+.|.+.   +.-+|++||++.++. .||+.+.
T Consensus       329 ~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~-~ad~~~~  407 (427)
T d1w1wa_         329 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFE-KSDALVG  407 (427)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHT-TCSEEEE
T ss_pred             hhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHH-hcccEEE
Confidence            4467899999998877544    4678899999999999999999998888654   235999999999876 6899876


Q ss_pred             E
Q 026376          217 V  217 (239)
Q Consensus       217 l  217 (239)
                      +
T Consensus       408 V  408 (427)
T d1w1wa_         408 V  408 (427)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.76  E-value=1.8e-07  Score=75.23  Aligned_cols=57  Identities=19%  Similarity=0.125  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHhccCCCEEEEeCCCCCCCHHHH----HHHHHHHhhcCCEEEEEecCHHHHh
Q 026376          152 QKSRVAFAKITFKKPHIILLDEPSNHLDLDAV----EALIQGLVLFQGGILMVSHDEHLIS  208 (239)
Q Consensus       152 qkqrv~laral~~~p~llllDEPt~~LD~~~~----~~l~~~l~~~~~tii~vsHd~~~~~  208 (239)
                      |.+++.-..-.+.+..++|+||+..|=++...    ..+++.|.+.+..++++||..+...
T Consensus       101 el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~  161 (224)
T d1ewqa2         101 EMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA  161 (224)
T ss_dssp             HHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred             hHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence            33333333333456679999999999999754    3567777777778999999987755

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.48  E-value=2e-06  Score=69.38  Aligned_cols=47  Identities=15%  Similarity=0.065  Sum_probs=32.8

Q ss_pred             hccCCCEEEEeCCCCCCCHHHHHH----HHHHHhhc-CCEEEEEecCHHHHh
Q 026376          162 TFKKPHIILLDEPSNHLDLDAVEA----LIQGLVLF-QGGILMVSHDEHLIS  208 (239)
Q Consensus       162 l~~~p~llllDEPt~~LD~~~~~~----l~~~l~~~-~~tii~vsHd~~~~~  208 (239)
                      -+.+..++|+||+..|=++.....    +++.+... +..+|++||..+...
T Consensus       117 ~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~~  168 (234)
T d1wb9a2         117 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ  168 (234)
T ss_dssp             HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred             hcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHhh
Confidence            345567999999999999876543    45555443 347889999776543

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=98.13  E-value=4.1e-08  Score=75.68  Aligned_cols=34  Identities=29%  Similarity=0.341  Sum_probs=29.6

Q ss_pred             eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 026376           44 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        44 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .+++.+|++.+| +++|+|||||||||+|.+|.-.
T Consensus        14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~   47 (222)
T d1qhla_          14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA   47 (222)
T ss_dssp             TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred             CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence            367888999876 9999999999999999999644

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.89  E-value=3e-06  Score=63.43  Aligned_cols=24  Identities=33%  Similarity=0.429  Sum_probs=21.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      +++|+|++|||||||++.|+..+.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            789999999999999999986544

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.88  E-value=3.5e-06  Score=64.66  Aligned_cols=27  Identities=22%  Similarity=0.565  Sum_probs=24.1

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhcCcCC
Q 026376           55 DSRIAMVGPNGIGKSTILKLIAGELQP   81 (239)
Q Consensus        55 Ge~~~iiG~NGsGKSTLl~~l~Gl~~p   81 (239)
                      |.+++|+||+|||||||++.|....+.
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~~   28 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIPN   28 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCC
Confidence            889999999999999999999876543

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.81  E-value=5.6e-06  Score=70.89  Aligned_cols=28  Identities=32%  Similarity=0.656  Sum_probs=23.5

Q ss_pred             eEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 026376           49 NFGIDLDSRIAMVGPNGIGKSTILKLIA   76 (239)
Q Consensus        49 sl~i~~Ge~~~iiG~NGsGKSTLl~~l~   76 (239)
                      ++++..+.+++|+|||||||||+|.+|+
T Consensus        19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          19 KVGFGESNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred             EEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence            3455556699999999999999999984

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=1.9e-06  Score=65.05  Aligned_cols=30  Identities=30%  Similarity=0.572  Sum_probs=25.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCceeE
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQPSSGTV   86 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i   86 (239)
                      .+.|+||+|+|||||++.++..+....+.+
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v   32 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPV   32 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHTTCCC
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHCCCEE
Confidence            588999999999999999999887665444

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=0.00021  Score=57.49  Aligned_cols=25  Identities=32%  Similarity=0.385  Sum_probs=21.5

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhc
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      -+|+++.|.|+.|+|||||+-.|+-
T Consensus        27 ~pg~~~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          27 VAGTVGALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCcEEEEEeCCCCCHHHHHHHHHH
Confidence            4699999999999999999866653

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.79  E-value=6.8e-06  Score=65.63  Aligned_cols=34  Identities=29%  Similarity=0.373  Sum_probs=26.6

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEE
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF   87 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~   87 (239)
                      +|..++++|++|+|||||+|.|.|-..-..|+|.
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs  127 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS  127 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence            6899999999999999999999987766667774

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.73  E-value=7e-06  Score=61.68  Aligned_cols=26  Identities=31%  Similarity=0.319  Sum_probs=23.8

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .|.+++|.||+||||||+.+.|+..+
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999999998765

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.71  E-value=4.9e-06  Score=62.72  Aligned_cols=27  Identities=19%  Similarity=0.211  Sum_probs=22.8

Q ss_pred             CEEEEECCCCCcHHHHHHHHhcCcCCC
Q 026376           56 SRIAMVGPNGIGKSTILKLIAGELQPS   82 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~Gl~~p~   82 (239)
                      .+++|+|++|||||||++.|...++..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~   28 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVRE   28 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence            378999999999999999887766643

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.63  E-value=1.1e-05  Score=60.33  Aligned_cols=27  Identities=26%  Similarity=0.373  Sum_probs=23.8

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      ..+.++.|.|++||||||+.+.|+..+
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            356789999999999999999998755

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.63  E-value=1.2e-05  Score=60.36  Aligned_cols=27  Identities=22%  Similarity=0.228  Sum_probs=23.8

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .+|-++.|+|++||||||+-+.|+-.+
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L   30 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTL   30 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999998554

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.61  E-value=1.3e-05  Score=60.33  Aligned_cols=24  Identities=25%  Similarity=0.491  Sum_probs=21.6

Q ss_pred             CEEEEECCCCCcHHHHHHHHhcCc
Q 026376           56 SRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      ..++|+||.|||||||.+.|+..+
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999999999999998765

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=1.7e-05  Score=62.30  Aligned_cols=27  Identities=19%  Similarity=0.368  Sum_probs=23.5

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      +|.+++|+||+|||||||.+.|.-..+
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            589999999999999999998876543

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=97.57  E-value=0.00034  Score=56.40  Aligned_cols=34  Identities=24%  Similarity=0.272  Sum_probs=27.1

Q ss_pred             eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q 026376           44 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        44 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      -|+.+..=+.+|+++.|.|++|+|||||+.-|+-
T Consensus        24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            3455443478999999999999999999877763

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.56  E-value=6.5e-06  Score=65.98  Aligned_cols=34  Identities=29%  Similarity=0.499  Sum_probs=23.0

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEE
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVF   87 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~   87 (239)
                      +|..++++|++|+|||||+|.|.|-..-..|+|.
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs  129 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS  129 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence            6889999999999999999999997766667775

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.55  E-value=2.4e-05  Score=58.60  Aligned_cols=27  Identities=33%  Similarity=0.562  Sum_probs=23.6

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      ++|-.++|.||+||||||+.+.|+-.+
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence            356789999999999999999998654

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.54  E-value=0.00027  Score=54.89  Aligned_cols=24  Identities=17%  Similarity=0.324  Sum_probs=21.6

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHH
Q 026376           52 IDLDSRIAMVGPNGIGKSTILKLI   75 (239)
Q Consensus        52 i~~Ge~~~iiG~NGsGKSTLl~~l   75 (239)
                      +++|+++.|.|++|+|||||.--+
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~   46 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQF   46 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHH
Confidence            789999999999999999997543

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.51  E-value=3e-05  Score=57.90  Aligned_cols=26  Identities=27%  Similarity=0.388  Sum_probs=23.4

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376           55 DSRIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        55 Ge~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      ..++.|.|++||||||+.+.|+..+.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999998764

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=2.5e-05  Score=57.41  Aligned_cols=23  Identities=52%  Similarity=0.741  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .+.|+||+||||||+-+.|+-.+
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998754

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.48  E-value=3.2e-05  Score=58.15  Aligned_cols=27  Identities=22%  Similarity=0.414  Sum_probs=23.2

Q ss_pred             CEEEEECCCCCcHHHHHHHHhcCcCCC
Q 026376           56 SRIAMVGPNGIGKSTILKLIAGELQPS   82 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~Gl~~p~   82 (239)
                      .+++|.|+.||||||+.+.|+-.+...
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~   28 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKE   28 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            589999999999999999998765443

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.47  E-value=2.6e-05  Score=57.20  Aligned_cols=22  Identities=32%  Similarity=0.342  Sum_probs=19.0

Q ss_pred             CEEEEECCCCCcHHHHHHHHhc
Q 026376           56 SRIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      .++.|.|++|||||||.+.|..
T Consensus         3 klIii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999997753

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.45  E-value=2.8e-05  Score=59.23  Aligned_cols=24  Identities=21%  Similarity=0.365  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      ++||.|+.|||||||.+.|+-.+.
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            689999999999999999976544

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.43  E-value=3.6e-05  Score=57.13  Aligned_cols=24  Identities=42%  Similarity=0.668  Sum_probs=21.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      ++.|.||.||||||+.+.|+..+.
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~~~   27 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQLD   27 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            689999999999999999987653

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.42  E-value=3.2e-05  Score=57.64  Aligned_cols=23  Identities=35%  Similarity=0.562  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+||.||||||+.+.|+--+
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999997543

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.39  E-value=3.3e-05  Score=59.40  Aligned_cols=23  Identities=26%  Similarity=0.530  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|||||||++.|+|.-
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~~   47 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCCCHHHHHHHhcCCC
Confidence            49999999999999999999853

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.36  E-value=0.00059  Score=53.61  Aligned_cols=26  Identities=27%  Similarity=0.350  Sum_probs=23.0

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhc
Q 026376           52 IDLDSRIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        52 i~~Ge~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      +.+|.++.|.|++|||||||..-++-
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~   48 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVE   48 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            78999999999999999999866644

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.35  E-value=4.6e-05  Score=58.51  Aligned_cols=22  Identities=50%  Similarity=0.813  Sum_probs=19.6

Q ss_pred             EEEECCCCCcHHHHHHHHhcCc
Q 026376           58 IAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        58 ~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      ++|+||+|||||||++.|+...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999987654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.33  E-value=5.1e-05  Score=59.85  Aligned_cols=22  Identities=27%  Similarity=0.398  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      +++|+|+.|||||||++.|...
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~   23 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRY   23 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Confidence            6899999999999999999753

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=2.8e-05  Score=59.32  Aligned_cols=26  Identities=23%  Similarity=0.342  Sum_probs=23.0

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      +|-++.|+|+.||||||+-+.|+-.+
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l   43 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYL   43 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            57789999999999999999998644

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.31  E-value=5.5e-05  Score=55.42  Aligned_cols=22  Identities=23%  Similarity=0.656  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      +++|+|++|+|||||++.+.+-
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6889999999999999999885

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.30  E-value=6.5e-05  Score=56.43  Aligned_cols=23  Identities=26%  Similarity=0.505  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.|+|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999853

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.30  E-value=4.2e-05  Score=57.48  Aligned_cols=23  Identities=22%  Similarity=0.611  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|||||||++.+.+-.
T Consensus        15 kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          15 KLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             EEEEEEETTSSHHHHHHHHSCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998864

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.27  E-value=6.5e-05  Score=57.93  Aligned_cols=22  Identities=45%  Similarity=0.750  Sum_probs=19.2

Q ss_pred             EEEECCCCCcHHHHHHHHhcCc
Q 026376           58 IAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        58 ~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      ++|+||+|||||||.+.|+-..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            6799999999999999986543

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.25  E-value=5.7e-05  Score=57.13  Aligned_cols=23  Identities=30%  Similarity=0.576  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      -++|+|+.|+|||||++.|.|-.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~   24 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKK   24 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47999999999999999999853

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=7.6e-05  Score=58.16  Aligned_cols=23  Identities=30%  Similarity=0.349  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      ++||.|+.|||||||.+.|+-.+
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l   26 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLL   26 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999887654

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=9.2e-05  Score=56.60  Aligned_cols=23  Identities=17%  Similarity=0.544  Sum_probs=20.4

Q ss_pred             CEEEEECCCCCcHHHHHHHHhcC
Q 026376           56 SRIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      ..++|+||+|||||||++.|...
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHh
Confidence            57899999999999999988753

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.24  E-value=4.6e-05  Score=58.00  Aligned_cols=21  Identities=33%  Similarity=0.683  Sum_probs=19.7

Q ss_pred             EEEECCCCCcHHHHHHHHhcC
Q 026376           58 IAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        58 ~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      +||+|+.++|||||++.|+|-
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999999874

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=8.2e-05  Score=55.96  Aligned_cols=22  Identities=45%  Similarity=0.717  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      +++|+|..|+|||||++.|+|-
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999984

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.23  E-value=7.6e-05  Score=54.70  Aligned_cols=23  Identities=43%  Similarity=0.485  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|||||||++.+++-.
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999987643

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.23  E-value=7.5e-05  Score=55.08  Aligned_cols=23  Identities=39%  Similarity=0.541  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|||||||++.+.+-.
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999998753

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.22  E-value=8.6e-05  Score=56.34  Aligned_cols=23  Identities=35%  Similarity=0.622  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .+||+|+.|+|||||++.|+|-.
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~~   32 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNKE   32 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTST
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999853

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.21  E-value=9.1e-05  Score=56.02  Aligned_cols=22  Identities=41%  Similarity=0.640  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      +++|+|..|+|||||++.|+|.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7999999999999999999986

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.15  E-value=9.9e-05  Score=56.85  Aligned_cols=22  Identities=32%  Similarity=0.724  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|||||||++.|+|-
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999875

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.12  E-value=0.00012  Score=54.84  Aligned_cols=22  Identities=41%  Similarity=0.646  Sum_probs=20.0

Q ss_pred             EEEECCCCCcHHHHHHHHhcCc
Q 026376           58 IAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        58 ~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      +.|+|+.||||||+.+.|+..+
T Consensus         3 I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7889999999999999998765

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.12  E-value=0.0001  Score=54.46  Aligned_cols=23  Identities=30%  Similarity=0.612  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.|+|.-
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~~   25 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGRE   25 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999864

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.12  E-value=7.3e-05  Score=56.63  Aligned_cols=22  Identities=27%  Similarity=0.469  Sum_probs=20.5

Q ss_pred             EEEECCCCCcHHHHHHHHhcCc
Q 026376           58 IAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        58 ~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      +||+|..++|||||++.|+|..
T Consensus         4 VaivG~~nvGKSTLin~L~~~~   25 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRAH   25 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            8999999999999999999864

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.11  E-value=0.0001  Score=61.77  Aligned_cols=31  Identities=23%  Similarity=0.380  Sum_probs=26.7

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcCcCCCc
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGELQPSS   83 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~   83 (239)
                      ..+.-+.|.|+.|||||||+++|++.++|+.
T Consensus       164 ~~~~nili~G~tgSGKTT~l~al~~~i~~~~  194 (323)
T d1g6oa_         164 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE  194 (323)
T ss_dssp             HHTCCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred             HhCCCEEEEeeccccchHHHHHHhhhccccc
Confidence            4455689999999999999999999998754

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.11  E-value=0.0001  Score=56.42  Aligned_cols=25  Identities=24%  Similarity=0.335  Sum_probs=21.5

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           55 DSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        55 Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      ..+++|+||.||||||+.+.|+--+
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4589999999999999999997543

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00018  Score=54.85  Aligned_cols=26  Identities=31%  Similarity=0.328  Sum_probs=23.5

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhc
Q 026376           52 IDLDSRIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        52 i~~Ge~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      +.+|+++.|.||+|||||||.-.++.
T Consensus        20 i~~G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          20 IETGSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence            78999999999999999999877764

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=97.09  E-value=0.00014  Score=54.10  Aligned_cols=23  Identities=48%  Similarity=0.700  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|||||||++.+.+-.
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            47899999999999999998854

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.08  E-value=0.00012  Score=55.02  Aligned_cols=24  Identities=33%  Similarity=0.416  Sum_probs=21.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      ++.|.|++||||||+.+.|+..+.
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            577899999999999999987664

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.07  E-value=0.00013  Score=54.76  Aligned_cols=24  Identities=38%  Similarity=0.520  Sum_probs=20.1

Q ss_pred             CEEEEECCCCCcHHHHHHHHhcCc
Q 026376           56 SRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      +.+.|+|+.||||||+-+.|+-.+
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHh
Confidence            346799999999999999997543

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.04  E-value=0.00016  Score=55.44  Aligned_cols=24  Identities=29%  Similarity=0.392  Sum_probs=21.5

Q ss_pred             CEEEEECCCCCcHHHHHHHHhcCc
Q 026376           56 SRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .+++|+||.||||||+.+.|+--+
T Consensus         9 ~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           9 SVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            469999999999999999998755

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.03  E-value=0.0002  Score=54.65  Aligned_cols=25  Identities=32%  Similarity=0.468  Sum_probs=22.3

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhc
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      ++|=.++|+||.||||||+.+.|+-
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHH
Confidence            3677899999999999999999983

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.03  E-value=0.00013  Score=56.04  Aligned_cols=28  Identities=29%  Similarity=0.331  Sum_probs=24.2

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           52 IDLDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        52 i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      ++++.++.|+||.||||||+.+.|+--+
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4567899999999999999999997643

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.98  E-value=0.00019  Score=53.68  Aligned_cols=23  Identities=43%  Similarity=0.567  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .+.|+|+.||||||+-+.|+-.+
T Consensus         3 ~IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh
Confidence            36788999999999999998654

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=8.7e-05  Score=55.80  Aligned_cols=23  Identities=26%  Similarity=0.485  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.++|||||+|.|.|..
T Consensus        18 ~I~lvG~~NvGKSSL~n~L~~~~   40 (188)
T d1puia_          18 EVAFAGRSNAGKSSALNTLTNQK   40 (188)
T ss_dssp             EEEEEECTTSSHHHHHTTTCCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            59999999999999999998864

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.98  E-value=0.0002  Score=53.89  Aligned_cols=23  Identities=26%  Similarity=0.437  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .+.|+||.||||||+.+.|+--+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999996644

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.97  E-value=0.00023  Score=53.96  Aligned_cols=25  Identities=28%  Similarity=0.238  Sum_probs=21.6

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhc
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      +.-+++.++|+.||||||+.+-++-
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4567999999999999999998753

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.97  E-value=0.00015  Score=55.35  Aligned_cols=23  Identities=26%  Similarity=0.429  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      ++.|+||.||||||+.+.|+--+
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999997543

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.97  E-value=0.00021  Score=54.89  Aligned_cols=23  Identities=39%  Similarity=0.395  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      +++++|..|||||||.+.|+..+
T Consensus         4 li~l~GlpgsGKSTla~~L~~~l   26 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTRYL   26 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999998644

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.96  E-value=0.00019  Score=53.64  Aligned_cols=22  Identities=32%  Similarity=0.525  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|..|||||||++.|.+-
T Consensus        17 kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          17 KVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6889999999999999999885

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00023  Score=54.33  Aligned_cols=23  Identities=26%  Similarity=0.339  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      +++|+||.||||||..+.|+--+
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999997543

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.94  E-value=0.00016  Score=55.32  Aligned_cols=24  Identities=25%  Similarity=0.256  Sum_probs=21.8

Q ss_pred             CEEEEECCCCCcHHHHHHHHhcCc
Q 026376           56 SRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      =+++|-|+.||||||+++.|+..+
T Consensus        10 ~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1          10 FTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999998765

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.00025  Score=55.00  Aligned_cols=26  Identities=27%  Similarity=0.411  Sum_probs=23.4

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      +|.+++|-|+-||||||+++.|+-.+
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L   26 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETL   26 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999999998654

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.89  E-value=0.00022  Score=54.44  Aligned_cols=21  Identities=38%  Similarity=0.555  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q 026376           57 RIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      ++||.|+.||||||+.+.|.-
T Consensus         5 IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999863

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.87  E-value=0.00026  Score=52.63  Aligned_cols=22  Identities=32%  Similarity=0.522  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++++|+.|+|||||++.+.+-
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999988653

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.85  E-value=0.00021  Score=57.01  Aligned_cols=26  Identities=27%  Similarity=0.360  Sum_probs=22.7

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376           55 DSRIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        55 Ge~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      ...+.|.||.|||||||.+.|++.+.
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~~~   57 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEETQ   57 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            34588999999999999999999764

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.85  E-value=0.0003  Score=53.28  Aligned_cols=23  Identities=30%  Similarity=0.442  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      ++.|+||.||||||+.+.|+--+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998654

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.0003  Score=55.00  Aligned_cols=28  Identities=25%  Similarity=0.258  Sum_probs=24.3

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      ++|-+++|-|+-||||||+.+.|+.-+.
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~   28 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALC   28 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4688999999999999999999877543

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.84  E-value=0.00026  Score=57.15  Aligned_cols=23  Identities=39%  Similarity=0.674  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|..|+|||||+|.|.|-.
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            48999999999999999999964

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.83  E-value=7.1e-05  Score=55.30  Aligned_cols=22  Identities=41%  Similarity=0.717  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.|+|.
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999985

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.82  E-value=0.0003  Score=55.02  Aligned_cols=26  Identities=23%  Similarity=0.236  Sum_probs=23.1

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcC
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      ++|-++.|.|.+|||||||.+.|.-.
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~   47 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQ   47 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            57889999999999999999998743

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.81  E-value=0.00027  Score=54.53  Aligned_cols=22  Identities=18%  Similarity=0.270  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      -++|+|+.|||||||++.+.+-
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999999874

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.00035  Score=54.01  Aligned_cols=31  Identities=35%  Similarity=0.597  Sum_probs=24.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC---cCCCceeEE
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE---LQPSSGTVF   87 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl---~~p~~G~i~   87 (239)
                      +++|.||.||||||+-+.|+--   ...+.|.++
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdLl   38 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIY   38 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHH
Confidence            8999999999999999999754   334556553

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.78  E-value=0.00034  Score=52.33  Aligned_cols=22  Identities=18%  Similarity=0.684  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.+.+-
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            3789999999999999988763

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00022  Score=56.10  Aligned_cols=27  Identities=22%  Similarity=0.308  Sum_probs=23.8

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      ++.+++|-|+-||||||+++.|+..+.
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            356899999999999999999998764

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.00035  Score=52.66  Aligned_cols=23  Identities=30%  Similarity=0.453  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .+.|+||.||||||..+.|+--+
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999997543

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.74  E-value=0.00039  Score=54.00  Aligned_cols=30  Identities=40%  Similarity=0.658  Sum_probs=23.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc---CCCceeE
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL---QPSSGTV   86 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~---~p~~G~i   86 (239)
                      +++|-||.||||||+-+.|+--+   ..+.|.+
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl   37 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM   37 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence            57888999999999999997643   3344554

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.74  E-value=0.0004  Score=54.35  Aligned_cols=28  Identities=29%  Similarity=0.395  Sum_probs=25.2

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcCC
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGELQP   81 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p   81 (239)
                      +|.+++|-|+-||||||+.+.|+-.+..
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~   29 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQP   29 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            6999999999999999999999876653

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.73  E-value=0.00034  Score=52.97  Aligned_cols=22  Identities=23%  Similarity=0.376  Sum_probs=20.3

Q ss_pred             EEEECCCCCcHHHHHHHHhcCc
Q 026376           58 IAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        58 ~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      +||+|.-.||||||++.|+|..
T Consensus         8 IaiiG~~naGKSTL~n~L~~~~   29 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTEIA   29 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEeCCCCcHHHHHHHHHHhc
Confidence            9999999999999999999753

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.73  E-value=0.00038  Score=51.99  Aligned_cols=21  Identities=29%  Similarity=0.561  Sum_probs=18.8

Q ss_pred             EEEECCCCCcHHHHHHHHhcC
Q 026376           58 IAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        58 ~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      ++++|+.|+|||||++.+.+-
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            889999999999999987653

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.73  E-value=0.00042  Score=52.27  Aligned_cols=23  Identities=39%  Similarity=0.663  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+||.||||||+.+.|+--+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999997544

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.73  E-value=0.00038  Score=54.62  Aligned_cols=23  Identities=39%  Similarity=0.684  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .+.|.||+|+||||+.++|+..+
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHH
Confidence            47899999999999999998755

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.71  E-value=0.00041  Score=53.78  Aligned_cols=20  Identities=35%  Similarity=0.567  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHh
Q 026376           57 RIAMVGPNGIGKSTILKLIA   76 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~   76 (239)
                      ++||+|+.||||||+.+.+.
T Consensus         4 iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999885

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.69  E-value=0.00051  Score=53.73  Aligned_cols=27  Identities=30%  Similarity=0.455  Sum_probs=21.2

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      ++.+++++||+|+||||.+-=|+-.+.
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~   31 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ   31 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            467999999999999998755555443

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00043  Score=51.97  Aligned_cols=22  Identities=27%  Similarity=0.712  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++++|+.|+|||||++.+.+-
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3889999999999999977653

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.68  E-value=0.051  Score=43.44  Aligned_cols=23  Identities=26%  Similarity=0.258  Sum_probs=20.1

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhc
Q 026376           55 DSRIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        55 Ge~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      ..+++|.|.-|.|||||.+.+.-
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999998753

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.0005  Score=51.08  Aligned_cols=22  Identities=27%  Similarity=0.605  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999988763

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.67  E-value=0.0005  Score=51.95  Aligned_cols=23  Identities=30%  Similarity=0.616  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .+.|+||-||||||+.+.|+--+
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47799999999999999998643

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.66  E-value=0.00039  Score=51.97  Aligned_cols=22  Identities=45%  Similarity=0.752  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++++|+.|+|||||++.+.+-
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4889999999999999999774

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.00044  Score=57.86  Aligned_cols=27  Identities=33%  Similarity=0.407  Sum_probs=22.8

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      ..-++||+||.|||||||++.|+..+.
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~~~~   79 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGMLLI   79 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            355799999999999999999986543

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.62  E-value=0.00061  Score=53.90  Aligned_cols=25  Identities=44%  Similarity=0.678  Sum_probs=21.9

Q ss_pred             CEEEEECCCCCcHHHHHHHHhcCcC
Q 026376           56 SRIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      ..+.|.||+|+||||+.++|+....
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHH
Confidence            3588999999999999999998653

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.61  E-value=0.00058  Score=52.31  Aligned_cols=23  Identities=35%  Similarity=0.562  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+||.||||||+-+.|+--+
T Consensus         8 rIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHB
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            68899999999999999998643

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.60  E-value=0.00051  Score=53.77  Aligned_cols=22  Identities=32%  Similarity=0.647  Sum_probs=20.0

Q ss_pred             EEEECCCCCcHHHHHHHHhcCc
Q 026376           58 IAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        58 ~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      +.|.||+|+||||+.++++..+
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            7899999999999999998754

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.55  E-value=0.00078  Score=49.86  Aligned_cols=21  Identities=24%  Similarity=0.585  Sum_probs=18.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q 026376           57 RIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      .++++|+.|+|||||++-+.+
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999987664

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.0007  Score=50.37  Aligned_cols=21  Identities=33%  Similarity=0.678  Sum_probs=18.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q 026376           57 RIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      .++|+|..|+|||||++-+.+
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999987765

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.00062  Score=50.97  Aligned_cols=22  Identities=27%  Similarity=0.613  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            3789999999999999987654

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.00071  Score=51.14  Aligned_cols=21  Identities=29%  Similarity=0.550  Sum_probs=19.1

Q ss_pred             EEEECCCCCcHHHHHHHHhcC
Q 026376           58 IAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        58 ~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      ++|+|+.|+|||||++.+.+-
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            889999999999999988764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.54  E-value=0.00068  Score=50.26  Aligned_cols=22  Identities=32%  Similarity=0.687  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++++|++|+|||||++.+++-
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999987664

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.54  E-value=0.00066  Score=50.77  Aligned_cols=31  Identities=16%  Similarity=0.204  Sum_probs=26.5

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhcCcCC
Q 026376           51 GIDLDSRIAMVGPNGIGKSTILKLIAGELQP   81 (239)
Q Consensus        51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p   81 (239)
                      ..++|.+++|-|+=|||||||.|.++.-+-.
T Consensus        29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             cCCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence            4578999999999999999999998765543

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.54  E-value=0.0005  Score=53.91  Aligned_cols=26  Identities=38%  Similarity=0.587  Sum_probs=19.9

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376           55 DSRIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        55 Ge~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      -.+++++||+|+||||.+-=|+-.+.
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~~~   34 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQFE   34 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35799999999999997755554443

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.54  E-value=0.0005  Score=54.03  Aligned_cols=26  Identities=35%  Similarity=0.350  Sum_probs=19.5

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcC
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      ++.-+++++||+|+||||.+-=|+-.
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa~   34 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAKM   34 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34458899999999999976544543

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.00076  Score=50.26  Aligned_cols=23  Identities=26%  Similarity=0.696  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|+.|+|||||++.+.+..
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCcCHHHHHHHHhCCc
Confidence            47899999999999999998864

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.00057  Score=51.00  Aligned_cols=21  Identities=33%  Similarity=0.593  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q 026376           57 RIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      .++|+|..|+|||||++.+.+
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999987654

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.51  E-value=0.00065  Score=53.75  Aligned_cols=26  Identities=31%  Similarity=0.374  Sum_probs=21.9

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .+.++.|.||.|+|||||++.++--.
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence            46789999999999999999876543

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.49  E-value=0.00077  Score=52.48  Aligned_cols=26  Identities=23%  Similarity=0.291  Sum_probs=23.3

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhc
Q 026376           52 IDLDSRIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        52 i~~Ge~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      +.+|.++.|.||.|||||||.-.++-
T Consensus        31 i~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            78999999999999999999976653

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.00062  Score=50.55  Aligned_cols=21  Identities=29%  Similarity=0.513  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q 026376           57 RIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      .++|+|+.|+|||||++.+.+
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999998764

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.48  E-value=0.00077  Score=52.31  Aligned_cols=21  Identities=38%  Similarity=0.515  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q 026376           57 RIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      ++||+|..||||||..+++..
T Consensus         5 iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH
Confidence            689999999999999999863

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.47  E-value=0.00074  Score=51.00  Aligned_cols=21  Identities=19%  Similarity=0.686  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q 026376           57 RIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      .++|+|..|+|||||++.+.+
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999987765

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.001  Score=49.76  Aligned_cols=24  Identities=38%  Similarity=0.793  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      .++++|..|+|||||++.+.+...
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~~~   28 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGVHD   28 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCcC
Confidence            478999999999999999987543

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.46  E-value=0.0008  Score=51.62  Aligned_cols=23  Identities=35%  Similarity=0.666  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      +++|-|.-||||||+++.|...+
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l   24 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAF   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999998654

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.45  E-value=0.00075  Score=52.74  Aligned_cols=27  Identities=26%  Similarity=0.192  Sum_probs=20.9

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      ...++.++||||+||||.+-=|+-.+.
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~   35 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYYK   35 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            345789999999999998866665443

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.45  E-value=0.00073  Score=57.97  Aligned_cols=23  Identities=30%  Similarity=0.541  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++|+|..|+|||||+|.|.|.-
T Consensus        58 ~Iai~G~~n~GKSSLiNaL~G~~   80 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFINTLRGIG   80 (400)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            38999999999999999999954

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.44  E-value=0.00076  Score=53.00  Aligned_cols=28  Identities=39%  Similarity=0.736  Sum_probs=23.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCce
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQPSSG   84 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~p~~G   84 (239)
                      .+.+.||.|+||||+.++|+..+....+
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~   64 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQTNIH   64 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred             eEEEECCCCCcHHHHHHHHHhccCCCcc
Confidence            4789999999999999999987665433

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.43  E-value=0.00081  Score=49.92  Aligned_cols=21  Identities=29%  Similarity=0.665  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q 026376           57 RIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      .++|+|..|+|||||++-+..
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999988865

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.00092  Score=49.34  Aligned_cols=22  Identities=14%  Similarity=0.525  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|..|+|||||++.+.+-
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999988753

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.0011  Score=49.08  Aligned_cols=22  Identities=23%  Similarity=0.552  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++-+.+-
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5899999999999999888663

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.00093  Score=49.79  Aligned_cols=22  Identities=23%  Similarity=0.659  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.+.+-
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999988763

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=96.41  E-value=0.00048  Score=51.95  Aligned_cols=22  Identities=41%  Similarity=0.590  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++++|+.|+|||||++.+.+-
T Consensus        19 KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          19 RILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHTCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999998654

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.41  E-value=0.00073  Score=55.99  Aligned_cols=24  Identities=29%  Similarity=0.493  Sum_probs=22.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      ++||-|++||||||+.+.|..++.
T Consensus        82 iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCCCcHHHHHHHHHHh
Confidence            899999999999999999988764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.00073  Score=50.70  Aligned_cols=22  Identities=23%  Similarity=0.522  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|++|+|||||++.+.+-
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5789999999999999887654

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.0011  Score=49.04  Aligned_cols=22  Identities=27%  Similarity=0.599  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++|+|+.|+|||||++.+.+-
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3889999999999999877653

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.00087  Score=49.74  Aligned_cols=21  Identities=14%  Similarity=0.480  Sum_probs=18.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q 026376           57 RIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      .++|+|..|+|||||++.+.+
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999997764

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.37  E-value=0.00085  Score=52.81  Aligned_cols=22  Identities=32%  Similarity=0.543  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      ++||+|...||||||++.|.+-
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhh
Confidence            6999999999999999999874

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.001  Score=49.65  Aligned_cols=20  Identities=25%  Similarity=0.649  Sum_probs=17.7

Q ss_pred             EEEECCCCCcHHHHHHHHhc
Q 026376           58 IAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        58 ~~iiG~NGsGKSTLl~~l~G   77 (239)
                      ++|+|+.|+|||||++.+..
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999976654

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.30  E-value=0.0014  Score=48.24  Aligned_cols=20  Identities=20%  Similarity=0.471  Sum_probs=18.1

Q ss_pred             EEEECCCCCcHHHHHHHHhc
Q 026376           58 IAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        58 ~~iiG~NGsGKSTLl~~l~G   77 (239)
                      ++|+|+.|+|||||++.+.+
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987764

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.30  E-value=0.00049  Score=56.47  Aligned_cols=24  Identities=25%  Similarity=0.421  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      ++||.|++||||||+.+.|.-.+.
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~   29 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFR   29 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHh
Confidence            899999999999999999877654

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.0014  Score=49.05  Aligned_cols=22  Identities=32%  Similarity=0.730  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      +++++|+.|+|||||++.+.+-
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3889999999999999988763

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.26  E-value=0.001  Score=52.36  Aligned_cols=24  Identities=42%  Similarity=0.794  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      -+.+.||.|+||||+.+++++.+.
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            367999999999999999998654

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.25  E-value=0.001  Score=50.03  Aligned_cols=30  Identities=30%  Similarity=0.465  Sum_probs=25.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCceeE
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQPSSGTV   86 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i   86 (239)
                      .++++|..|+|||||++-+.....|+.|..
T Consensus         4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~   33 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV   33 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence            578999999999999998877777777754

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.24  E-value=0.0012  Score=49.07  Aligned_cols=21  Identities=24%  Similarity=0.574  Sum_probs=18.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q 026376           57 RIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      .++|+|+.|+|||||++-+.+
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            578999999999999987654

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.22  E-value=0.0012  Score=51.25  Aligned_cols=25  Identities=24%  Similarity=0.373  Sum_probs=22.6

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHh
Q 026376           52 IDLDSRIAMVGPNGIGKSTILKLIA   76 (239)
Q Consensus        52 i~~Ge~~~iiG~NGsGKSTLl~~l~   76 (239)
                      +.+|+++.|.|+.|+|||||.--++
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a   55 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSC   55 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence            7899999999999999999986664

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=96.21  E-value=0.0008  Score=50.26  Aligned_cols=24  Identities=38%  Similarity=0.462  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      .+.++|+.|+|||||++.+.+-..
T Consensus        14 kIvlvG~~~vGKTSli~rl~~~~~   37 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKLGQS   37 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTCCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            478999999999999999876443

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.0011  Score=49.54  Aligned_cols=21  Identities=29%  Similarity=0.561  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q 026376           57 RIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      .++|+|..|+|||||++-+.+
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999987765

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.0013  Score=49.64  Aligned_cols=21  Identities=24%  Similarity=0.458  Sum_probs=18.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q 026376           57 RIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      .++|+|..|+|||||++.+.+
T Consensus         7 KivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999987765

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.0013  Score=48.84  Aligned_cols=21  Identities=29%  Similarity=0.597  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q 026376           57 RIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      .++|+|+.|+|||||++-+.+
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999988875

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.18  E-value=0.0013  Score=54.28  Aligned_cols=26  Identities=35%  Similarity=0.611  Sum_probs=21.9

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      ++.-+.++||.|||||+|.|+|+...
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~   73 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLA   73 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhcc
Confidence            33456799999999999999999864

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.18  E-value=0.0011  Score=50.55  Aligned_cols=20  Identities=30%  Similarity=0.667  Sum_probs=18.3

Q ss_pred             EEEECCCCCcHHHHHHHHhc
Q 026376           58 IAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        58 ~~iiG~NGsGKSTLl~~l~G   77 (239)
                      ++|+|+.|+|||||++.+.+
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            88999999999999997765

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0012  Score=49.32  Aligned_cols=20  Identities=30%  Similarity=0.544  Sum_probs=18.4

Q ss_pred             EEEECCCCCcHHHHHHHHhc
Q 026376           58 IAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        58 ~~iiG~NGsGKSTLl~~l~G   77 (239)
                      ++++|..|+|||||++.+.+
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999998764

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.0014  Score=51.32  Aligned_cols=25  Identities=16%  Similarity=0.203  Sum_probs=22.9

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHh
Q 026376           52 IDLDSRIAMVGPNGIGKSTILKLIA   76 (239)
Q Consensus        52 i~~Ge~~~iiG~NGsGKSTLl~~l~   76 (239)
                      |.+|.++.|.|++|||||||.-.++
T Consensus        34 ip~G~~~~i~G~~GsGKT~lalq~~   58 (258)
T d1v5wa_          34 IESMAITEAFGEFRTGKTQLSHTLC   58 (258)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHH
Confidence            6799999999999999999987765

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.15  E-value=0.0014  Score=51.43  Aligned_cols=24  Identities=21%  Similarity=0.403  Sum_probs=21.5

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHH
Q 026376           52 IDLDSRIAMVGPNGIGKSTILKLI   75 (239)
Q Consensus        52 i~~Ge~~~iiG~NGsGKSTLl~~l   75 (239)
                      +.+|.++.|.||.|||||||.--+
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~   56 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTL   56 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHH
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHH
Confidence            789999999999999999997544

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.14  E-value=0.0014  Score=54.54  Aligned_cols=25  Identities=28%  Similarity=0.494  Sum_probs=21.4

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      ..-++||.|+-|||||||+..|...
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~~   74 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGSL   74 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHHH
Confidence            3457999999999999999988754

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0019  Score=47.97  Aligned_cols=21  Identities=19%  Similarity=0.550  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q 026376           57 RIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      .++++|+.|+|||||++.+.+
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            578999999999999988874

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.13  E-value=0.0017  Score=52.17  Aligned_cols=26  Identities=46%  Similarity=0.758  Sum_probs=22.3

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      ...-+.+.||.|||||+|.+.|+..+
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA~~~   69 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIAGEA   69 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEeeCCCCCCccHHHHHHHHHc
Confidence            33458899999999999999999765

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=96.12  E-value=0.0012  Score=54.09  Aligned_cols=31  Identities=29%  Similarity=0.346  Sum_probs=27.5

Q ss_pred             eEEEeCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           49 NFGIDLDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        49 sl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      =+.|.+|+..+|+|+.|+|||||+..|+...
T Consensus        37 l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          37 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             HSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             cccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            3689999999999999999999999887643

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.11  E-value=0.0014  Score=51.01  Aligned_cols=22  Identities=41%  Similarity=0.628  Sum_probs=19.5

Q ss_pred             EEEECCCCCcHHHHHHHHhcCc
Q 026376           58 IAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        58 ~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      +.+.||.|+||||+.++++..+
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l   60 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHEL   60 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHHHH
Confidence            6799999999999999998654

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.11  E-value=0.0014  Score=51.16  Aligned_cols=29  Identities=34%  Similarity=0.494  Sum_probs=23.3

Q ss_pred             EEEEECCCCCcHHHHHHHH-hcCcCCCcee
Q 026376           57 RIAMVGPNGIGKSTILKLI-AGELQPSSGT   85 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l-~Gl~~p~~G~   85 (239)
                      .+.|+|++|+|||||++-+ .+-..|+-|-
T Consensus         8 KilllG~~~vGKTsll~~~~~~~~~pTiG~   37 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRILHVVLTSGI   37 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCCCSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCcCCCCCe
Confidence            5889999999999999765 4555677773

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.00085  Score=50.12  Aligned_cols=21  Identities=33%  Similarity=0.591  Sum_probs=18.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q 026376           57 RIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      .++++|+.|+|||||++.+++
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999987755

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.08  E-value=0.0016  Score=48.47  Aligned_cols=21  Identities=29%  Similarity=0.551  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q 026376           57 RIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      .++++|+.|+|||||++.+.+
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998765

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.08  E-value=0.0016  Score=51.38  Aligned_cols=28  Identities=21%  Similarity=0.350  Sum_probs=24.1

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhcCcCCC
Q 026376           55 DSRIAMVGPNGIGKSTILKLIAGELQPS   82 (239)
Q Consensus        55 Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~   82 (239)
                      ...+.|.||.|+||||+++.|+..++..
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~l~~~   70 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWELYKDK   70 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHhcc
Confidence            3578999999999999999999877643

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.06  E-value=0.0013  Score=51.45  Aligned_cols=95  Identities=19%  Similarity=0.186  Sum_probs=46.9

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHh
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGS  133 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  133 (239)
                      ...+++++||+|+||||.+-=|+-.+. ..|       .+++++.-+.+     ...            ..+.++.+.+.
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~~~~-~~g-------~kV~lit~Dt~-----R~g------------a~eQL~~~a~~   65 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAYFYK-KKG-------FKVGLVGADVY-----RPA------------ALEQLQQLGQQ   65 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHHHHH-HTT-------CCEEEEECCCS-----SHH------------HHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH-HCC-------CceEEEEeecc-----ccc------------hhHHHHHhccc
Confidence            446799999999999998755554433 122       24555543321     100            12344555666


Q ss_pred             cCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 026376          134 FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHL  178 (239)
Q Consensus       134 ~~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~L  178 (239)
                      +++.-.. -....++.--.  +=++..+...+.+++|.|  |+|.
T Consensus        66 l~v~~~~-~~~~~~~~~~~--~~a~~~~~~~~~d~IlID--TaGr  105 (211)
T d1j8yf2          66 IGVPVYG-EPGEKDVVGIA--KRGVEKFLSEKMEIIIVD--TAGR  105 (211)
T ss_dssp             HTCCEEC-CTTCCCHHHHH--HHHHHHHHHTTCSEEEEE--CCCS
T ss_pred             cCcceee-cccchhhhHHH--HHHHHHhhccCCceEEEe--cCCc
Confidence            6664221 12222332211  124555566778888888  6664

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.06  E-value=0.0013  Score=51.85  Aligned_cols=40  Identities=20%  Similarity=0.349  Sum_probs=30.0

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCC--EEEEEecCHH
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGLVLFQG--GILMVSHDEH  205 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--tii~vsHd~~  205 (239)
                      ..+++++||.-. |.......+.+.+.....  .+|++|++.+
T Consensus       131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~  172 (252)
T d1sxje2         131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMS  172 (252)
T ss_dssp             CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred             CceEEEeccccc-cccccchhhhcccccccccccceeeecccc
Confidence            567999999854 777777777777766543  4788888775

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.0017  Score=48.08  Aligned_cols=21  Identities=24%  Similarity=0.588  Sum_probs=18.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q 026376           57 RIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      .++|+|..|+|||||++-+..
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478999999999999987754

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.03  E-value=0.0011  Score=49.61  Aligned_cols=21  Identities=24%  Similarity=0.642  Sum_probs=9.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q 026376           57 RIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      .++|+|..|+|||||++.+++
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            388999999999999987765

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.02  E-value=0.0018  Score=49.02  Aligned_cols=29  Identities=34%  Similarity=0.519  Sum_probs=23.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC--cCCCcee
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE--LQPSSGT   85 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl--~~p~~G~   85 (239)
                      .+.|+|..|+|||||++-+.-.  ..|+-|-
T Consensus         4 KivllG~~~vGKTsll~r~~f~~~~~pTiG~   34 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMRIIHGQDPTKGI   34 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCCSSE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCeeee
Confidence            5789999999999999988432  3577773

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0018  Score=48.13  Aligned_cols=21  Identities=29%  Similarity=0.670  Sum_probs=18.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q 026376           57 RIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      .++|+|+.|+|||||++.+.+
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            389999999999999986644

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.01  E-value=0.0015  Score=52.12  Aligned_cols=23  Identities=30%  Similarity=0.447  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      -+.|.||.|||||+|.+.|+...
T Consensus        42 ~vLL~GppGtGKT~la~alA~~~   64 (246)
T d1d2na_          42 SVLLEGPPHSGKTALAAKIAEES   64 (246)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhhcc
Confidence            47899999999999999998753

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=96.00  E-value=0.0018  Score=48.11  Aligned_cols=21  Identities=33%  Similarity=0.580  Sum_probs=18.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q 026376           57 RIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      +++|+|..|+|||||++.+.+
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999998754

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.95  E-value=0.0018  Score=50.30  Aligned_cols=41  Identities=20%  Similarity=0.263  Sum_probs=28.2

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhcC-CE-EEEEecCHHH
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGLVLFQ-GG-ILMVSHDEHL  206 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~t-ii~vsHd~~~  206 (239)
                      +.+++++||- ..+.......+...+.+.. .+ ++++|++...
T Consensus        99 ~~kiiiiDe~-d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~  141 (227)
T d1sxjc2          99 GFKLIILDEA-DAMTNAAQNALRRVIERYTKNTRFCVLANYAHK  141 (227)
T ss_dssp             SCEEEEETTG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred             CeEEEEEecc-ccchhhHHHHHHHHhhhcccceeeccccCcHHH
Confidence            3469999996 4677777778888887653 34 6667766543

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.95  E-value=0.002  Score=52.66  Aligned_cols=22  Identities=36%  Similarity=0.377  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      ++||-|+.|||||||.+.|.-.
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~~   50 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYNH   50 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHH
Confidence            7899999999999999877543

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.002  Score=48.43  Aligned_cols=22  Identities=23%  Similarity=0.450  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .++++|+.|+|||||++.+.+-
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999977653

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.002  Score=48.68  Aligned_cols=21  Identities=29%  Similarity=0.521  Sum_probs=18.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q 026376           57 RIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      .++|+|..|+|||||++.+..
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            489999999999999987654

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.88  E-value=0.0018  Score=55.37  Aligned_cols=28  Identities=39%  Similarity=0.428  Sum_probs=23.8

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      .+...+.|.||.||||||++..+...+.
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence            3456899999999999999999887654

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.86  E-value=0.0021  Score=48.31  Aligned_cols=21  Identities=33%  Similarity=0.634  Sum_probs=17.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q 026376           57 RIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      .++++|..|+|||||++-+..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999975544

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.82  E-value=0.0021  Score=51.79  Aligned_cols=29  Identities=34%  Similarity=0.532  Sum_probs=23.9

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376           52 IDLDSRIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        52 i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      +.+..-+.|.||.|+|||+|.+++++...
T Consensus        38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence            33445588999999999999999998763

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.80  E-value=0.0022  Score=51.25  Aligned_cols=23  Identities=39%  Similarity=0.850  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      -+.+.||.|+|||+|.++|+...
T Consensus        44 giLl~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEecCCCCChhHHHHHHHHHc
Confidence            37899999999999999999754

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.0022  Score=48.64  Aligned_cols=21  Identities=24%  Similarity=0.458  Sum_probs=18.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q 026376           57 RIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      .++|+|+.|+|||||++.+.+
T Consensus         5 KvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999976654

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.0022  Score=52.19  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=21.8

Q ss_pred             CEEEEECCCCCcHHHHHHHHhcCc
Q 026376           56 SRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      -+++|+||-++||||||+.|.|..
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCC
Confidence            389999999999999999999854

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=95.70  E-value=0.0033  Score=47.90  Aligned_cols=22  Identities=41%  Similarity=0.578  Sum_probs=20.3

Q ss_pred             EEEECCCCCcHHHHHHHHhcCc
Q 026376           58 IAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        58 ~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      +||+|.-.+|||||++.|+|..
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEeccCCcHHHHHHHHHhhh
Confidence            7999999999999999999854

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.59  E-value=0.0053  Score=46.50  Aligned_cols=32  Identities=19%  Similarity=0.324  Sum_probs=24.8

Q ss_pred             eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 026376           44 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA   76 (239)
Q Consensus        44 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~   76 (239)
                      .++..-+.+ .|.-+.|.|++|+|||||.-.+.
T Consensus         5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~   36 (177)
T d1knxa2           5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI   36 (177)
T ss_dssp             EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred             eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence            345555566 67889999999999999986664

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.57  E-value=0.0015  Score=54.23  Aligned_cols=26  Identities=31%  Similarity=0.493  Sum_probs=23.7

Q ss_pred             CEEEEECCCCCcHHHHHHHHhcCcCC
Q 026376           56 SRIAMVGPNGIGKSTILKLIAGELQP   81 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~Gl~~p   81 (239)
                      .-+.|.||-|+|||||.|.++++++|
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iLp~   54 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALLPE   54 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             CeEEEECCCCccHHHHHHHHHHhCCC
Confidence            45889999999999999999999876

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.57  E-value=0.0036  Score=49.02  Aligned_cols=21  Identities=29%  Similarity=0.340  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhc
Q 026376           57 RIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      ++||.|+-||||||..+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999953

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.0033  Score=49.19  Aligned_cols=25  Identities=32%  Similarity=0.561  Sum_probs=21.9

Q ss_pred             CEEEEECCCCCcHHHHHHHHhcCcC
Q 026376           56 SRIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      .+++|=|+-||||||+++.|+-.+.
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHh
Confidence            4789999999999999999987553

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.45  E-value=0.0042  Score=49.68  Aligned_cols=23  Identities=39%  Similarity=0.657  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      -+.|.||.|+|||+|.++++...
T Consensus        40 giLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eeEEecCCCCCchHHHHHHHHHh
Confidence            38899999999999999999854

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.44  E-value=0.0023  Score=50.63  Aligned_cols=23  Identities=30%  Similarity=0.499  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      ++.|.||.|+||||+++.++..+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            35567999999999999998765

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.37  E-value=0.0031  Score=54.64  Aligned_cols=23  Identities=39%  Similarity=0.718  Sum_probs=21.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      -+.++||+|||||-|.|.|++++
T Consensus        51 NILliGPTGvGKTlLAr~LAk~l   73 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAKLA   73 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999999965

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.32  E-value=0.0042  Score=50.97  Aligned_cols=58  Identities=14%  Similarity=0.053  Sum_probs=34.5

Q ss_pred             CCCChHHHHHHHHHHHhccCCCEEEE--eCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHH
Q 026376          146 YTLSGGQKSRVAFAKITFKKPHIILL--DEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHL  206 (239)
Q Consensus       146 ~~LSgGqkqrv~laral~~~p~llll--DEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~  206 (239)
                      ..++.-+.++..-..-+...|-++++  +|..   ..+...++.+.....+..++.++-..+.
T Consensus       196 ~~~~~~e~~~~~~~~~~~~kP~~~v~Nk~d~~---~~e~~~~~~~~~~~~~~~vi~~sa~~E~  255 (319)
T d1wxqa1         196 TKWSQDDLLAFASEIRRVNKPMVIAANKADAA---SDEQIKRLVREEEKRGYIVIPTSAAAEL  255 (319)
T ss_dssp             GGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS---CHHHHHHHHHHHHHTTCEEEEECHHHHH
T ss_pred             hhcCHHHHHHhHHHhhhhcCchhhhcccccch---hhHHHHHHHHHHhhcCCEEEEecHHHHH
Confidence            35667777777766666667766663  2322   2344455555555556677777766554

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.28  E-value=0.0046  Score=46.40  Aligned_cols=28  Identities=29%  Similarity=0.469  Sum_probs=21.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC---cCCCce
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE---LQPSSG   84 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl---~~p~~G   84 (239)
                      .+.|+|..|+|||||++-+..-   ..|+-|
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG   34 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRIIHGSGVPTTG   34 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence            4789999999999999888543   335545

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.27  E-value=0.0055  Score=49.89  Aligned_cols=26  Identities=38%  Similarity=0.611  Sum_probs=22.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcC-CC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQ-PS   82 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~-p~   82 (239)
                      .++|+|.-.||||||+++|+|.-- |.
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~~lP~   52 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRDFLPR   52 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCCCCCC
Confidence            489999999999999999999753 54

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.23  E-value=0.005  Score=50.22  Aligned_cols=22  Identities=32%  Similarity=0.576  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .+||+|..-|||||||++|++-
T Consensus        12 kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          12 KTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5999999999999999999975

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.21  E-value=0.0056  Score=49.57  Aligned_cols=23  Identities=39%  Similarity=0.596  Sum_probs=21.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .++++|.-.||||||+++|+|.-
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHhCCC
Confidence            48899999999999999999975

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.09  E-value=0.011  Score=44.63  Aligned_cols=31  Identities=19%  Similarity=0.341  Sum_probs=23.2

Q ss_pred             eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 026376           45 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA   76 (239)
Q Consensus        45 l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~   76 (239)
                      ++..-+.+ .|.=+.|.|++|+|||||.-.+.
T Consensus         5 lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~   35 (176)
T d1kkma_           5 MHGVLVDI-YGLGVLITGDSGVGKSETALELV   35 (176)
T ss_dssp             EEEEEEEE-TTEEEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence            44444444 57789999999999999886654

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=95.03  E-value=0.0086  Score=48.14  Aligned_cols=28  Identities=21%  Similarity=0.496  Sum_probs=23.3

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 026376           51 GIDLDSRIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      =+..|.++-|.||+|||||||.-.++..
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CccCceEEEEecCCCcHHHHHHHHHHHH
Confidence            4678999999999999999987555544

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.97  E-value=0.0068  Score=49.10  Aligned_cols=30  Identities=20%  Similarity=0.380  Sum_probs=26.1

Q ss_pred             eeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q 026376           48 LNFGIDLDSRIAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        48 isl~i~~Ge~~~iiG~NGsGKSTLl~~l~G   77 (239)
                      .=+.+.+|++.+|+|+.|+|||||+..|+-
T Consensus        61 ~l~pigkGQr~~If~~~g~GKt~l~~~i~~   90 (276)
T d2jdid3          61 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN   90 (276)
T ss_dssp             HHSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred             eeccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence            346899999999999999999999777754

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=94.79  E-value=0.0076  Score=48.58  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      .+||||-.-+||||||+.|++-
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHCC
Confidence            6899999999999999999965

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.77  E-value=0.006  Score=47.67  Aligned_cols=22  Identities=36%  Similarity=0.498  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      ++.|.|.=|||||||++-+..-
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            6789999999999999888663

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.76  E-value=0.0096  Score=45.61  Aligned_cols=24  Identities=33%  Similarity=0.522  Sum_probs=21.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      -++|+|.-.+|||||++.|.|...
T Consensus        10 ni~iiGhVd~GKSTL~~~L~~~~~   33 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAITGIWT   33 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred             EEEEEEccCCcHHHHHHHHHhhhc
Confidence            489999999999999999998654

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.75  E-value=0.0077  Score=49.63  Aligned_cols=23  Identities=26%  Similarity=0.612  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .+.++||+|+|||.|.+.|+-.+
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~l   76 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKAL   76 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHhhc
Confidence            67899999999999999999865

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=94.70  E-value=0.0072  Score=48.75  Aligned_cols=20  Identities=35%  Similarity=0.640  Sum_probs=18.1

Q ss_pred             EEEEECCCCCcHHHHHHHHh
Q 026376           57 RIAMVGPNGIGKSTILKLIA   76 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~   76 (239)
                      -++|+|+.|||||||...|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll   23 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALL   23 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHH
Confidence            37999999999999999883

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.69  E-value=0.0072  Score=48.81  Aligned_cols=28  Identities=25%  Similarity=0.429  Sum_probs=23.4

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhcC
Q 026376           51 GIDLDSRIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      =+..|.++-|.||+|||||||.-.++..
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~   83 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVAN   83 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHH
Confidence            4678999999999999999997555543

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.62  E-value=0.013  Score=43.89  Aligned_cols=31  Identities=19%  Similarity=0.348  Sum_probs=22.4

Q ss_pred             eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 026376           45 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIA   76 (239)
Q Consensus        45 l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~   76 (239)
                      ++..-+.+ .|.=+.|.|++|+|||||.-.+.
T Consensus         6 ~H~~~v~~-~g~gvli~G~sg~GKS~la~~l~   36 (169)
T d1ko7a2           6 LHGVLVDV-YGVGVLITGDSGIGKSETALELI   36 (169)
T ss_dssp             EESEEEEE-TTEEEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence            33333344 57889999999999999875543

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.61  E-value=0.0085  Score=46.13  Aligned_cols=20  Identities=20%  Similarity=0.341  Sum_probs=18.2

Q ss_pred             EEEECCCCCcHHHHHHHHhc
Q 026376           58 IAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        58 ~~iiG~NGsGKSTLl~~l~G   77 (239)
                      ++|+|.-+||||||+..|.+
T Consensus         6 i~iiGhvd~GKSTL~~~Ll~   25 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALTY   25 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            79999999999999999853

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=94.44  E-value=0.0083  Score=48.39  Aligned_cols=94  Identities=19%  Similarity=0.316  Sum_probs=54.5

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHH
Q 026376           51 GIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAH  130 (239)
Q Consensus        51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (239)
                      =++.|.++-|-||+|||||||.-.++...+-..|.+        .|+.-+.  .+                 +.    +.
T Consensus        53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v--------~yiDtE~--~~-----------------~~----~~  101 (268)
T d1xp8a1          53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTC--------AFIDAEH--AL-----------------DP----VY  101 (268)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCE--------EEEESSC--CC-----------------CH----HH
T ss_pred             CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEE--------EEEECCc--cC-----------------CH----HH
Confidence            467899999999999999999877776544323332        3332221  01                 11    12


Q ss_pred             HHhcCCCcccccCCCCCCChHHHHHHHHHHHhcc--CCCEEEEeCCCCCC
Q 026376          131 LGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK--KPHIILLDEPSNHL  178 (239)
Q Consensus       131 l~~~~l~~~~~~~~~~~LSgGqkqrv~laral~~--~p~llllDEPt~~L  178 (239)
                      ++.+|++.+  +-.+..-.-+|++ +.++..|+.  +++++++|=-++-.
T Consensus       102 a~~~Gvd~d--~i~~~~~~~~E~~-~~~~~~l~~~~~~~liIiDSi~al~  148 (268)
T d1xp8a1         102 ARALGVNTD--ELLVSQPDNGEQA-LEIMELLVRSGAIDVVVVDSVAALT  148 (268)
T ss_dssp             HHHTTCCGG--GCEEECCSSHHHH-HHHHHHHHTTTCCSEEEEECTTTCC
T ss_pred             HHHhCCCch--hEEEEcCCCHHHH-HHHHHHHHhcCCCcEEEEecccccc
Confidence            344455321  1111122235555 456666653  58999999887755

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.42  E-value=0.011  Score=45.92  Aligned_cols=22  Identities=32%  Similarity=0.523  Sum_probs=19.4

Q ss_pred             EEEECCCCCcHHHHHHHHhcCc
Q 026376           58 IAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        58 ~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      +.|.||.|||||-|+++++-..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~   60 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEA   60 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            6899999999999999997643

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.32  E-value=0.01  Score=48.08  Aligned_cols=24  Identities=25%  Similarity=0.415  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHH---hcCcC
Q 026376           57 RIAMVGPNGIGKSTILKLI---AGELQ   80 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l---~Gl~~   80 (239)
                      -++|+|..|||||||...|   +|...
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~   34 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIH   34 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCccc
Confidence            3799999999999999888   55544

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.30  E-value=0.011  Score=49.61  Aligned_cols=30  Identities=20%  Similarity=0.180  Sum_probs=26.8

Q ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376           51 GIDLDSRIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        51 ~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      .++++..+.+.||.|+||||+.+.|++.+.
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            457788999999999999999999999764

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.15  E-value=0.013  Score=45.88  Aligned_cols=51  Identities=18%  Similarity=0.169  Sum_probs=35.1

Q ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHhhcC--CEEEEEecCHHHH-hhhcCeEEEE
Q 026376          166 PHIILLDEPSNHLDLDAVEALIQGLVLFQ--GGILMVSHDEHLI-SGSVEELWVV  217 (239)
Q Consensus       166 p~llllDEPt~~LD~~~~~~l~~~l~~~~--~tii~vsHd~~~~-~~~~d~i~~l  217 (239)
                      .+++++||.=. |...+...|+..+.+..  ..+|++|++.+-+ ..+-.|..++
T Consensus       116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i~~~i~SRc~~i  169 (239)
T d1njfa_         116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF  169 (239)
T ss_dssp             SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred             CEEEEEECccc-CCHHHHHHHHHHHhcCCCCeEEEEEcCCccccChhHhhhhccc
Confidence            46999999864 78888888888887643  3588888887543 3344444443

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.14  E-value=0.022  Score=47.25  Aligned_cols=27  Identities=41%  Similarity=0.491  Sum_probs=23.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQPSS   83 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~p~~   83 (239)
                      ++.|=|+=||||||+++.|+..+....
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~~~~   34 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAASGGS   34 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGGCSS
T ss_pred             EEEEECCccCCHHHHHHHHHHHhccCC
Confidence            578899999999999999998776543

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.04  E-value=0.015  Score=44.72  Aligned_cols=52  Identities=10%  Similarity=0.102  Sum_probs=33.7

Q ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHhhcC-C-EEEEEecCHHH-HhhhcCeEEEE
Q 026376          165 KPHIILLDEPSNHLDLDAVEALIQGLVLFQ-G-GILMVSHDEHL-ISGSVEELWVV  217 (239)
Q Consensus       165 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-tii~vsHd~~~-~~~~~d~i~~l  217 (239)
                      +.+|+++||. -.|...+...+++.+.+.. . .+|++|++..- ...+-.|...+
T Consensus       108 ~~kviIide~-d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~tI~SRc~~i  162 (207)
T d1a5ta2         108 GAKVVWVTDA-ALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLH  162 (207)
T ss_dssp             SCEEEEESCG-GGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred             ccceEEechh-hhhhhhhhHHHHHHHHhhcccceeeeeecChhhhhhhhcceeEEE
Confidence            4679999975 3455667778888887643 3 46888988763 33344555443

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.72  E-value=0.015  Score=49.33  Aligned_cols=43  Identities=7%  Similarity=-0.003  Sum_probs=31.9

Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHHHhh
Q 026376          167 HIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISG  209 (239)
Q Consensus       167 ~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~~~~  209 (239)
                      -++++||--+-........++...++++..+++++.++..+..
T Consensus       278 v~l~lDE~~~~~~~~~l~~~l~~~Rk~Gv~~~l~~Qs~~ql~~  320 (433)
T d1e9ra_         278 LWLFIDELASLEKLASLADALTKGRKAGLRVVAGLQSTSQLDD  320 (433)
T ss_dssp             EEEEESCGGGSCBCSSHHHHHHHCTTTTEEEEEEESCHHHHHH
T ss_pred             eEEEechHhhhcccHHHHHHHHHhCCCCceEEEEeccHHHHHH
Confidence            3678899766555455666777777788899999999877643

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=93.66  E-value=0.015  Score=47.02  Aligned_cols=32  Identities=13%  Similarity=0.124  Sum_probs=26.4

Q ss_pred             eeEEEeCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           48 LNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        48 isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .=+.+.+|++++|+|+.|+|||+|+..++-..
T Consensus        60 ~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~   91 (276)
T d1fx0a3          60 AMIPVGRGQRELIIGDRQTGKTAVATDTILNQ   91 (276)
T ss_dssp             TTSCCBTTCBCBEEESSSSSHHHHHHHHHHTC
T ss_pred             ccccccCCceEeeccCCCCChHHHHHHHHhhh
Confidence            33689999999999999999999987654333

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=93.53  E-value=0.028  Score=46.37  Aligned_cols=34  Identities=12%  Similarity=0.167  Sum_probs=25.8

Q ss_pred             eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           45 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        45 l~~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      +.-+-....+| .+.+.||.|+|||.|.+.|++..
T Consensus       114 ~~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~~  147 (321)
T d1w44a_         114 AEFGGHRYASG-MVIVTGKGNSGKTPLVHALGEAL  147 (321)
T ss_dssp             EEETTEEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred             HHHhhcccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence            34344566665 56668999999999999999864

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=93.43  E-value=0.02  Score=43.69  Aligned_cols=21  Identities=24%  Similarity=0.347  Sum_probs=19.3

Q ss_pred             EEEECCCCCcHHHHHHHHhcC
Q 026376           58 IAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        58 ~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      +||+|.-++|||||++.|.+.
T Consensus         6 i~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHH
Confidence            799999999999999999764

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=93.24  E-value=0.019  Score=47.49  Aligned_cols=24  Identities=33%  Similarity=0.605  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      .|+|=|+=||||||+++.|+..+.
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC---
T ss_pred             EEEEECCcCCCHHHHHHHHHHHhC
Confidence            478999999999999999986543

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.17  E-value=0.026  Score=43.14  Aligned_cols=23  Identities=26%  Similarity=0.587  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      -+.|+||.|.|||+++.-|+-.+
T Consensus        45 n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHHH
Confidence            47899999999999998887644

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.06  E-value=0.026  Score=45.30  Aligned_cols=24  Identities=29%  Similarity=0.504  Sum_probs=20.3

Q ss_pred             CEEEEECCCCCcHHHHHHHHhcCc
Q 026376           56 SRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .-+.|+||.|+|||+++.-++..+
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHHH
Confidence            357899999999999999887643

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=92.99  E-value=0.024  Score=46.97  Aligned_cols=26  Identities=31%  Similarity=0.414  Sum_probs=22.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCcCCC
Q 026376           57 RIAMVGPNGIGKSTILKLIAGELQPS   82 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~~p~   82 (239)
                      +++|=|+=||||||+++.|+-.+...
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~~~   32 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFAIT   32 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            58899999999999999999877654

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=92.76  E-value=0.026  Score=46.26  Aligned_cols=20  Identities=25%  Similarity=0.433  Sum_probs=17.8

Q ss_pred             eCCCEEEEECCCCCcHHHHH
Q 026376           53 DLDSRIAMVGPNGIGKSTIL   72 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl   72 (239)
                      +.|++..+.|.+|+|||||-
T Consensus        12 ~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            35899999999999999976

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=92.71  E-value=0.037  Score=45.38  Aligned_cols=19  Identities=26%  Similarity=0.396  Sum_probs=17.2

Q ss_pred             CCCEEEEECCCCCcHHHHH
Q 026376           54 LDSRIAMVGPNGIGKSTIL   72 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl   72 (239)
                      .|++..+.|.+|+|||||-
T Consensus        13 ~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          13 EGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             TCCEEEEEECTTSCHHHHT
T ss_pred             CCCEEEEEccCCCCccccc
Confidence            4889999999999999975

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.68  E-value=0.02  Score=46.52  Aligned_cols=30  Identities=20%  Similarity=0.190  Sum_probs=25.2

Q ss_pred             eeeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q 026376           47 NLNFGIDLDSRIAMVGPNGIGKSTILKLIA   76 (239)
Q Consensus        47 ~isl~i~~Ge~~~iiG~NGsGKSTLl~~l~   76 (239)
                      |.=+.+-+|++++|+|+.|+|||||+.-++
T Consensus        60 D~l~pig~GQr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          60 DSLVPIGRGQRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             HHHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred             ecccCccCCCEEEeecCCCCChHHHHHHHH
Confidence            344789999999999999999999976443

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.60  E-value=0.029  Score=43.50  Aligned_cols=19  Identities=26%  Similarity=0.445  Sum_probs=17.4

Q ss_pred             EEEECCCCCcHHHHHHHHh
Q 026376           58 IAMVGPNGIGKSTILKLIA   76 (239)
Q Consensus        58 ~~iiG~NGsGKSTLl~~l~   76 (239)
                      ++++|.-++|||||+..|.
T Consensus         6 i~viGHVd~GKTTL~~~Ll   24 (224)
T d1jnya3           6 LIVIGHVDHGKSTLVGRLL   24 (224)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEecCCCCHHHHHHHHH
Confidence            7999999999999998873

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.50  E-value=0.028  Score=46.13  Aligned_cols=23  Identities=35%  Similarity=0.749  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Q 026376           57 RIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      .+.++||+|+|||.|.+.|+-.+
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHHh
Confidence            57899999999999999998865

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=92.42  E-value=0.035  Score=46.53  Aligned_cols=27  Identities=30%  Similarity=0.628  Sum_probs=22.1

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           52 IDLDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        52 i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      +.++. +.++||+|+|||-|.|.|+.+.
T Consensus        66 ~p~~n-iLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          66 LSKSN-ILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             CCCCC-EEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCcc-eeeeCCCCccHHHHHHHHHhhc
Confidence            34554 6688999999999999999865

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=92.05  E-value=0.04  Score=44.12  Aligned_cols=28  Identities=29%  Similarity=0.432  Sum_probs=24.7

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           52 IDLDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        52 i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      ..+--++.+.||-++|||||+++|+.++
T Consensus       101 ~~k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_         101 FGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             STTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            3455688999999999999999999987

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=92.03  E-value=0.037  Score=45.45  Aligned_cols=19  Identities=26%  Similarity=0.420  Sum_probs=17.7

Q ss_pred             CCCEEEEECCCCCcHHHHH
Q 026376           54 LDSRIAMVGPNGIGKSTIL   72 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl   72 (239)
                      .|++..+.|-||+|||||-
T Consensus        13 ~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            6789999999999999997

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=91.81  E-value=0.053  Score=42.08  Aligned_cols=19  Identities=26%  Similarity=0.307  Sum_probs=17.8

Q ss_pred             EEEECCCCCcHHHHHHHHh
Q 026376           58 IAMVGPNGIGKSTILKLIA   76 (239)
Q Consensus        58 ~~iiG~NGsGKSTLl~~l~   76 (239)
                      ++++|.-.+|||||+..|.
T Consensus        12 i~viGHVd~GKSTL~~~Ll   30 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLL   30 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            7899999999999999994

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=90.94  E-value=0.035  Score=38.55  Aligned_cols=21  Identities=14%  Similarity=0.135  Sum_probs=17.7

Q ss_pred             EeCCCEEEEECCCCCcHHHHH
Q 026376           52 IDLDSRIAMVGPNGIGKSTIL   72 (239)
Q Consensus        52 i~~Ge~~~iiG~NGsGKSTLl   72 (239)
                      +++|+.+.|.+|.|||||+..
T Consensus         4 l~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTH
T ss_pred             HHcCCcEEEEcCCCCChhHHH
Confidence            467999999999999999543

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=90.57  E-value=0.085  Score=41.99  Aligned_cols=29  Identities=24%  Similarity=0.390  Sum_probs=23.3

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhcCcCCCc
Q 026376           55 DSRIAMVGPNGIGKSTILKLIAGELQPSS   83 (239)
Q Consensus        55 Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~   83 (239)
                      +-.++|+|-.-+|||||+|.|.|......
T Consensus       112 ~~~v~vvG~PNvGKSsliN~L~~~~~~~~  140 (273)
T d1puja_         112 AIRALIIGIPNVGKSTLINRLAKKNIAKT  140 (273)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCC--
T ss_pred             ceEEEEEecCccchhhhhhhhhccceEEE
Confidence            34589999999999999999999765433

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.84  E-value=0.064  Score=44.45  Aligned_cols=23  Identities=26%  Similarity=0.434  Sum_probs=19.8

Q ss_pred             EEEECCCCCcHHHHHHHH---hcCcC
Q 026376           58 IAMVGPNGIGKSTILKLI---AGELQ   80 (239)
Q Consensus        58 ~~iiG~NGsGKSTLl~~l---~Gl~~   80 (239)
                      +||+|.-|+|||||+..|   +|.+.
T Consensus        20 I~iiGhvd~GKTTL~d~Ll~~~g~i~   45 (341)
T d1n0ua2          20 MSVIAHVDHGKSTLTDSLVQRAGIIS   45 (341)
T ss_dssp             EEEECCGGGTHHHHHHHHHHHHBCCB
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcc
Confidence            899999999999999988   46543

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=89.83  E-value=0.065  Score=43.01  Aligned_cols=16  Identities=25%  Similarity=0.551  Sum_probs=13.6

Q ss_pred             EEEEECCCCCcHHHHH
Q 026376           57 RIAMVGPNGIGKSTIL   72 (239)
Q Consensus        57 ~~~iiG~NGsGKSTLl   72 (239)
                      .+.|.|+-||||||.+
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            4779999999999855

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=89.80  E-value=0.064  Score=42.18  Aligned_cols=18  Identities=39%  Similarity=0.449  Sum_probs=17.1

Q ss_pred             EEEECCCCCcHHHHHHHH
Q 026376           58 IAMVGPNGIGKSTILKLI   75 (239)
Q Consensus        58 ~~iiG~NGsGKSTLl~~l   75 (239)
                      ++|+|.-++|||||+..|
T Consensus        27 i~iiGHVD~GKSTL~~~L   44 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNI   44 (245)
T ss_dssp             EEEEECGGGTHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHH
Confidence            799999999999999888

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=89.70  E-value=0.061  Score=42.73  Aligned_cols=17  Identities=18%  Similarity=0.413  Sum_probs=13.9

Q ss_pred             CEEEEECCCCCcHHHHH
Q 026376           56 SRIAMVGPNGIGKSTIL   72 (239)
Q Consensus        56 e~~~iiG~NGsGKSTLl   72 (239)
                      .-+.|+|+-||||||.+
T Consensus        15 ~~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          15 GPCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             SEEEECCCTTSCHHHHH
T ss_pred             CCEEEEeeCCccHHHHH
Confidence            34679999999999754

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=89.65  E-value=0.05  Score=43.29  Aligned_cols=26  Identities=15%  Similarity=0.157  Sum_probs=20.3

Q ss_pred             EeCCCEEEEECCCCCcHHH--HHHHHhc
Q 026376           52 IDLDSRIAMVGPNGIGKST--ILKLIAG   77 (239)
Q Consensus        52 i~~Ge~~~iiG~NGsGKST--Ll~~l~G   77 (239)
                      +.+|+.+.|.+|.|||||+  |..++..
T Consensus         6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~   33 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTKRYLPAIVRE   33 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTTTHHHHHHHH
T ss_pred             hhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence            4689999999999999997  3355443

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=89.49  E-value=0.11  Score=37.25  Aligned_cols=42  Identities=14%  Similarity=0.077  Sum_probs=29.7

Q ss_pred             ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHH
Q 026376          163 FKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHL  206 (239)
Q Consensus       163 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~  206 (239)
                      ..++++++.||-=-==|  ...++.+.+.+.+.+|++..=|.++
T Consensus        77 ~~~~dvI~IDE~QFf~d--~i~~~~~~~~~~g~~Viv~GLd~Df  118 (139)
T d2b8ta1          77 NDETKVIGIDEVQFFDD--RICEVANILAENGFVVIISGLDKNF  118 (139)
T ss_dssp             CTTCCEEEECSGGGSCT--HHHHHHHHHHHTTCEEEEECCSBCT
T ss_pred             ccCcCEEEechhhhcch--hHHHHHHHHHhcCceEEEEEecccc
Confidence            34789999999833213  4566777887778899998765543

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.29  E-value=0.095  Score=41.03  Aligned_cols=19  Identities=26%  Similarity=0.372  Sum_probs=17.1

Q ss_pred             EEEECCCCCcHHHHHHHHh
Q 026376           58 IAMVGPNGIGKSTILKLIA   76 (239)
Q Consensus        58 ~~iiG~NGsGKSTLl~~l~   76 (239)
                      ++|+|.-++|||||...|+
T Consensus         9 i~iiGHvD~GKsTl~~~ll   27 (239)
T d1f60a3           9 VVVIGHVDSGKSTTTGHLI   27 (239)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            7899999999999997773

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=88.98  E-value=0.078  Score=37.15  Aligned_cols=30  Identities=20%  Similarity=0.081  Sum_probs=20.2

Q ss_pred             HHhccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 026376          160 KITFKKPHIILLDEPSNHLDLDAVEALIQGL  190 (239)
Q Consensus       160 ral~~~p~llllDEPt~~LD~~~~~~l~~~l  190 (239)
                      .....+-+++|+||-= .+|..+...+...+
T Consensus        89 ~~~~~~~~~vIiDE~H-~~~~~~~~~~~~~l  118 (136)
T d1a1va1          89 GCSGGAYDIIICDECH-STDATSILGIGTVL  118 (136)
T ss_dssp             GGGGCCCSEEEEETTT-CCSHHHHHHHHHHH
T ss_pred             chhhhcCCEEEEeccc-ccCHHHHHHHHHHH
Confidence            3445678999999985 46877654444443

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=88.82  E-value=0.13  Score=42.72  Aligned_cols=19  Identities=26%  Similarity=0.380  Sum_probs=17.0

Q ss_pred             CCEEEEECCCCCcHHHHHH
Q 026376           55 DSRIAMVGPNGIGKSTILK   73 (239)
Q Consensus        55 Ge~~~iiG~NGsGKSTLl~   73 (239)
                      +.++.|.||-|+||||++.
T Consensus       163 ~~~~vI~G~pGTGKTt~i~  181 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVA  181 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHH
Confidence            6799999999999999873

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.81  E-value=0.12  Score=36.25  Aligned_cols=28  Identities=11%  Similarity=0.043  Sum_probs=22.1

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHh-cCcC
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIA-GELQ   80 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~-Gl~~   80 (239)
                      ++|=.+.+.|-+|||||||.++|. -+.+
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q   32 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTFLQ   32 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            356678899999999999999984 4444

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=88.64  E-value=0.086  Score=44.40  Aligned_cols=20  Identities=30%  Similarity=0.617  Sum_probs=17.0

Q ss_pred             EEEECCCCCcHHHHHHHHhc
Q 026376           58 IAMVGPNGIGKSTILKLIAG   77 (239)
Q Consensus        58 ~~iiG~NGsGKSTLl~~l~G   77 (239)
                      ..|||+.|+|||+++.-++-
T Consensus        46 ~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHHH
T ss_pred             CeEECCCCCCHHHHHHHHHH
Confidence            57999999999999876654

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=88.46  E-value=0.13  Score=40.43  Aligned_cols=28  Identities=21%  Similarity=0.449  Sum_probs=22.8

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCcCC
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGELQP   81 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl~~p   81 (239)
                      .+.-+.|.|+.|+||+++.++|...-..
T Consensus        22 ~~~pvlI~Ge~GtGK~~~A~~ih~~s~~   49 (247)
T d1ny5a2          22 AECPVLITGESGVGKEVVARLIHKLSDR   49 (247)
T ss_dssp             CCSCEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHHhcCC
Confidence            3456889999999999999999765443

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.41  E-value=0.12  Score=39.13  Aligned_cols=116  Identities=9%  Similarity=0.074  Sum_probs=69.2

Q ss_pred             CCEEEEECCCCCcHHHHHHHHhcCcCCCceeEEecCceEEEEEeeccCCCCCCCCcHHHHHHHhCCCCcHHHHHHHHHhc
Q 026376           55 DSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF  134 (239)
Q Consensus        55 Ge~~~iiG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  134 (239)
                      +--+.+.||+|+||||+.+.++..+.-..-               .+.+...+...        .....-+.++++.+.+
T Consensus        15 ~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~---------------~h~D~~~i~~~--------~~~I~Id~IR~i~~~~   71 (198)
T d2gnoa2          15 GISILINGEDLSYPREVSLELPEYVEKFPP---------------KASDVLEIDPE--------GENIGIDDIRTIKDFL   71 (198)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHHHTSCC---------------CTTTEEEECCS--------SSCBCHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHhcccc---------------CCCCEEEEeCC--------cCCCCHHHHHHHHHHH
Confidence            446889999999999999998875421100               00000000000        0112345666666655


Q ss_pred             CCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC-C-EEEEEecCHHH-Hhhhc
Q 026376          135 GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQ-G-GILMVSHDEHL-ISGSV  211 (239)
Q Consensus       135 ~l~~~~~~~~~~~LSgGqkqrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-tii~vsHd~~~-~~~~~  211 (239)
                      ....         ..              .+.+|+++|| .-.|...+...+++.|.+-. . .+|++|++.+- +..+-
T Consensus        72 ~~~~---------~~--------------~~~KviIId~-ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ll~TI~  127 (198)
T d2gnoa2          72 NYSP---------EL--------------YTRKYVIVHD-CERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIK  127 (198)
T ss_dssp             TSCC---------SS--------------SSSEEEEETT-GGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHH
T ss_pred             hhCc---------cc--------------CCCEEEEEeC-ccccchhhhhHHHHHHhCCCCCceeeeccCChhhCHHHHh
Confidence            4321         11              1458999999 55678888889999998753 3 47788888764 34445


Q ss_pred             CeEEEE
Q 026376          212 EELWVV  217 (239)
Q Consensus       212 d~i~~l  217 (239)
                      .|+..+
T Consensus       128 SRC~~i  133 (198)
T d2gnoa2         128 SRVFRV  133 (198)
T ss_dssp             TTSEEE
T ss_pred             cceEEE
Confidence            555544

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=86.51  E-value=0.12  Score=39.44  Aligned_cols=29  Identities=21%  Similarity=0.204  Sum_probs=25.6

Q ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhcCcC
Q 026376           52 IDLDSRIAMVGPNGIGKSTILKLIAGELQ   80 (239)
Q Consensus        52 i~~Ge~~~iiG~NGsGKSTLl~~l~Gl~~   80 (239)
                      +++-.++.+.||-++|||++...|+.++.
T Consensus        50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          50 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence            46678999999999999999999998873

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=85.68  E-value=0.22  Score=44.97  Aligned_cols=26  Identities=23%  Similarity=0.293  Sum_probs=21.8

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcC
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      ...+.+.|.|.+|||||+-.|.|...
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il~y  109 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIMQF  109 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            46789999999999999988777554

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=85.53  E-value=0.21  Score=45.32  Aligned_cols=27  Identities=22%  Similarity=0.347  Sum_probs=22.5

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      ...+.+.|.|++|||||+-.|.|+..+
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            457899999999999999888876543

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=85.49  E-value=0.32  Score=35.45  Aligned_cols=56  Identities=14%  Similarity=0.172  Sum_probs=43.4

Q ss_pred             cCCCEEEEeCCCCCCCHH--HHHHHHHHHhhcC--CEEEEEecCH-HHHhhhcCeEEEEeC
Q 026376          164 KKPHIILLDEPSNHLDLD--AVEALIQGLVLFQ--GGILMVSHDE-HLISGSVEELWVVSE  219 (239)
Q Consensus       164 ~~p~llllDEPt~~LD~~--~~~~l~~~l~~~~--~tii~vsHd~-~~~~~~~d~i~~l~~  219 (239)
                      .+.++++|||-..+++..  ....+++.|++..  .-+|++-++. +.+...||.|..|+.
T Consensus        93 ~~~dllILDEi~~Ai~~gli~~~~v~~ll~~rp~~~evVlTGr~~p~~L~e~ADlVTEm~~  153 (157)
T d1g5ta_          93 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELRP  153 (157)
T ss_dssp             TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred             CccCEEeHHHHHHHHHcCCCCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhcceeeeeee
Confidence            458999999999887754  5677888887653  3699998864 567778999988864

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.39  E-value=0.23  Score=35.11  Aligned_cols=40  Identities=13%  Similarity=0.143  Sum_probs=27.9

Q ss_pred             cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCCEEEEEecCHHH
Q 026376          164 KKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHL  206 (239)
Q Consensus       164 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~tii~vsHd~~~  206 (239)
                      .++++++.||----=|   ...+.+.+.+.+.+|++..=|.++
T Consensus        72 ~~~d~I~IDEaQFf~d---l~~~~~~~~~~~~~Viv~GLd~Df  111 (133)
T d1xbta1          72 LGVAVIGIDEGQFFPD---IVEFCEAMANAGKTVIVAALDGTF  111 (133)
T ss_dssp             HTCSEEEESSGGGCTT---HHHHHHHHHHTTCEEEEECCSBCT
T ss_pred             cccceEEeehhHHHHH---HHHHHHHHHhcCCcEEEEEecccc
Confidence            4799999999754423   344566666778888888765543

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=84.14  E-value=0.26  Score=44.61  Aligned_cols=27  Identities=30%  Similarity=0.336  Sum_probs=21.9

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      +..+.+.|.|.+|||||+-.|.|...+
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            456899999999999999777775543

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.77  E-value=0.18  Score=38.81  Aligned_cols=22  Identities=23%  Similarity=0.326  Sum_probs=18.2

Q ss_pred             eCCCEEEEECCCCCcHHHHHHH
Q 026376           53 DLDSRIAMVGPNGIGKSTILKL   74 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~   74 (239)
                      -.|+-+.|++|.|+|||+..-+
T Consensus        56 l~g~~~~i~apTGsGKT~~~~~   77 (237)
T d1gkub1          56 LRKESFAATAPTGVGKTSFGLA   77 (237)
T ss_dssp             HTTCCEECCCCBTSCSHHHHHH
T ss_pred             HCCCCEEEEecCCChHHHHHHH
Confidence            4688899999999999986443

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=82.36  E-value=0.3  Score=44.77  Aligned_cols=27  Identities=22%  Similarity=0.322  Sum_probs=21.4

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      ...+.+.|.|.+|||||+-.|.|...+
T Consensus       121 ~~~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         121 RENQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             TCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            456889999999999998777665543

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.86  E-value=0.18  Score=37.74  Aligned_cols=18  Identities=17%  Similarity=0.372  Sum_probs=15.5

Q ss_pred             CCCEEEEECCCCCcHHHH
Q 026376           54 LDSRIAMVGPNGIGKSTI   71 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTL   71 (239)
                      .|.-+.|..|.|||||+.
T Consensus        39 ~~~~~il~apTGsGKT~~   56 (202)
T d2p6ra3          39 SGKNLLLAMPTAAGKTLL   56 (202)
T ss_dssp             TCSCEEEECSSHHHHHHH
T ss_pred             cCCCEEEEcCCCCchhHH
Confidence            567788999999999985

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=81.11  E-value=0.34  Score=44.39  Aligned_cols=25  Identities=20%  Similarity=0.224  Sum_probs=20.3

Q ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Q 026376           54 LDSRIAMVGPNGIGKSTILKLIAGE   78 (239)
Q Consensus        54 ~Ge~~~iiG~NGsGKSTLl~~l~Gl   78 (239)
                      ..+.+.|.|++|||||.-.|.|+..
T Consensus       120 ~nQ~IiisGESGaGKTe~~K~il~y  144 (789)
T d1kk8a2         120 ENQSCLITGESGAGKTENTKKVIMY  144 (789)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            4689999999999999976665543

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=80.64  E-value=0.42  Score=43.29  Aligned_cols=27  Identities=22%  Similarity=0.342  Sum_probs=22.4

Q ss_pred             eCCCEEEEECCCCCcHHHHHHHHhcCc
Q 026376           53 DLDSRIAMVGPNGIGKSTILKLIAGEL   79 (239)
Q Consensus        53 ~~Ge~~~iiG~NGsGKSTLl~~l~Gl~   79 (239)
                      ...+.+.|.|++|||||+-.|.+...+
T Consensus        92 ~~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          92 ERNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            457899999999999999887776543