Citrus Sinensis ID: 026378

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MVRAFKMKGQKRKKKRDEKYDREEEEEEKEEVEEEELNDSGKRAKLEKTSQNDNKKGEEDGQEEKDVVVHEMEGIPIAPSDQNTKRPGVIFVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGCLLARQVSHIVQKNWLR
Secondary Structure (PSIPRED)
cccccccccHHHccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHccccccccccccccccccEEEEEEccccEEEEEccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHcHHHHHcccccEEEEEEEccEEEEEcccccccccHHHHHHHHHHHHHHccccccccccccEEEEccccccccccccEEEEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEcccccHccccccccccHHHHHHHHccHHHcccccccccHHHcccccccccccccccccccccHcccccccccccccccccEEEEEEEccEEEEEEccccEEEEccHHHHHHHHHccccHHHccccHHHHHHHHHHccHHHHccccEEEEEEEcccEEEEEcccccccccHHHHHHHHHHHHHHccccccccccEHHEEEcccHHHccccccEEEEEEEEcccccEcHHHHcc
Coil and Loop (DISEMBL)
mvrafkmkgqkrkkkrdekydreeeEEEKEEVEEEElndsgkraklektsqndnkkgeedgqeeKDVVVHEmegipiapsdqntkrpgVIFVLEKASLEVAKVgksyqilnsddhsnflrrnnknpadyrpdIVHQALLSILDSRLTKAGRLQAVYVRtdkgvlfevkphvrlprtYKRFAGIMLQLLQKLSITAVGKREKLLRVIKnpvtqylpvnsrkIGCLLARQVSHIVQKNWLR
Flexible Loop (DISEMBL)
mvrafkmkgqkrkkkrdekydreeeeeekeeveeeelndsgkraklektsqndnkkgeedgqeekDVVVHEMEGipiapsdqntkrpGVIFVLEKASLEVAKVGksyqilnsddhsnFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVyvrtdkgvlfevkphvrlprTYKRFAGIMLQLLQKLSITAVGKREKLLRviknpvtqylpvnsrkigcllarqvshivqknwlr
Low Complexity Region (SEG)
MVRAFKMKGQkrkkkrdekydreeeeeekeeveeeeLNDSGKRAKLEKTSQNDNkkgeedgqeekdvvvHEMEGIPIAPSDQNTKRPGVIFVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGCLLARQVSHIVQKNWLR
Disordered region (IsUnstruct)
***************************************************************************************GVIFVLEKASLEVAKVGKSYQILNS*****F*********DYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGCLLARQVSHIVQKNW**
Disordered Region (DISOPRED)
*****************************************************************************************IFVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSI****KREKLLRVIKNPVTQYLPVNSRKIGCLLARQVSHI*QKNWLR
Disordered Region (DISEMBL)
*****************************************KRAKL*******************DVVVHEMEGIPIAPSDQNTKRPGVIFVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGCLLARQVSHIVQKNWLR
Disordered Region (DISPRO)
************************************************************************EGIPI******TKRPGVIFVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGCLLARQVSHIVQKNWLR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVRAFKMKGQKRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRAKLEKTSQNDNKKGEEDGQEEKDVVVHEMEGIPIAPSDQNTKRPGVIFVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGCLLARQVSHIVQKNWLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	239	2.2.26 [Sep-21-2011]
Q10107	359	Probable ribosomal RNA sm	yes	no	0.627	0.417	0.568	7e-42
Q9XX15	231	Ribosomal RNA small subun	yes	no	0.602	0.623	0.551	5e-40
O35130	244	Ribosomal RNA small subun	yes	no	0.556	0.545	0.544	4e-37
Q92979	244	Ribosomal RNA small subun	yes	no	0.556	0.545	0.537	9e-37
Q06287	252	Ribosomal RNA small subun	yes	no	0.602	0.571	0.5	2e-36
Q9P8P7	267	Ribosomal RNA small subun	N/A	no	0.602	0.539	0.487	3e-36
Q9W4J5	252	Ribosomal RNA small subun	yes	no	0.548	0.519	0.5	3e-34
Q96UP2	229	Ribosomal RNA small subun	yes	no	0.615	0.641	0.493	2e-31
O50087	229	Ribosomal RNA small subun	yes	no	0.389	0.406	0.443	3e-10
Q9V0M0	232	Ribosomal RNA small subun	yes	no	0.389	0.400	0.432	1e-09

>sp|Q10107|MRA1_SCHPO Probable ribosomal RNA small subunit methyltransferase mra1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mra1 PE=1 SV=2

 Score =  170 bits (431), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 91/160 (56%), Positives = 111/160 (69%), Gaps = 10/160 (6%)

Query: 68  VVHEMEGIP---IAPSDQNTKRPGVIFVLEKASLEVAKVGKS----YQILNSDDHSNFLR 120
           V   M  IP   I   D  T+R  +I VL++A LE+ KVGK+    YQ+LN DDH   L+
Sbjct: 128 VTTHMAPIPARSIGSHDTTTQR--LIVVLDQACLEIYKVGKAKDAKYQLLNCDDHQGILK 185

Query: 121 RNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRF 180
           + N+N A  RPDI HQ LL++LDS L KAGRLQ VY+ T K VL EV P VR+PRT+KRF
Sbjct: 186 KLNRNIAQARPDITHQCLLTLLDSPLNKAGRLQ-VYIHTAKKVLIEVNPSVRIPRTFKRF 244

Query: 181 AGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRK 220
           +G+M+QLL KLSI +V   EKLL+VIKNPVT YLP N RK
Sbjct: 245 SGLMVQLLHKLSIRSVNGNEKLLKVIKNPVTDYLPPNCRK 284

Involved in 40S ribosomal subunit biogenesis and 18S rRNA processing. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 1189 in S.cerevisiae 18S rRNA. Thus, appears to be the methyltransferase involved in the biosynthesis of the hypermodified N1-methyl-N3-(3-amino-3-carboxypropyl) pseudouridine (m1acp3-Psi) conserved in eukaryotic 18S rRNA (By similarity). Essential for cell growth. It also has a key role in promoting the mating function.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q9XX15|NEP1_CAEEL Ribosomal RNA small subunit methyltransferase nep-1 OS=Caenorhabditis elegans GN=Y39A1A.14 PE=3 SV=1

 Score =  164 bits (415), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 81/147 (55%), Positives = 106/147 (72%), Gaps = 3/147 (2%)

Query: 92  VLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGR 151
           VLE  SLE AKVG  Y IL+SD H+NFLR+  K+PADYRPDI+HQ LL++LDS L +AG+
Sbjct: 31  VLEGCSLETAKVGGEYAILSSDKHANFLRKQKKDPADYRPDILHQCLLNLLDSPLNRAGK 90

Query: 152 LQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVT 211
           L+ V+ RT K VL +V P  R+PRT+ RF G+M+QLL KLSI A    +KL+ V+KNPV+
Sbjct: 91  LR-VFFRTSKNVLVDVSPQCRIPRTFDRFCGLMVQLLHKLSIRAAETTQKLMSVVKNPVS 149

Query: 212 QYLPVNSRKIGCLLARQVSHIVQKNWL 238
            +LPV SRK+  L++  V  +   N L
Sbjct: 150 NHLPVGSRKM--LMSFNVPELTMANKL 174

Involved in 40S ribosomal subunit biogenesis and 18S rRNA processing. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 1248 in human 18S rRNA. Thus, appears to be the methyltransferase involved in the biosynthesis of the hypermodified N1-methyl-N3-(3-amino-3-carboxypropyl) pseudouridine (m1acp3-Psi) conserved in eukaryotic 18S rRNA.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|O35130|NEP1_MOUSE Ribosomal RNA small subunit methyltransferase NEP1 OS=Mus musculus GN=Emg1 PE=1 SV=1

 Score =  154 bits (390), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 73/134 (54%), Positives = 96/134 (71%), Gaps = 1/134 (0%)

Query: 89  VIFVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTK 148
           +I VLE ASLE  KVGK+Y++LN D H + L +N ++P + RPDI HQ+LL ++DS L +
Sbjct: 43  LIVVLEGASLETVKVGKTYELLNCDRHKSMLLKNGRDPGEVRPDITHQSLLMLMDSPLNR 102

Query: 149 AGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKN 208
           AG LQ VY+ T K VL EV P  R+PRT+ RF G+M+QLL KLS+ A    +KLL+VIKN
Sbjct: 103 AGLLQ-VYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKN 161

Query: 209 PVTQYLPVNSRKIG 222
           PV+ + PV   KIG
Sbjct: 162 PVSDHFPVGCMKIG 175

Involved in 40S ribosomal subunit biogenesis and 18S rRNA processing. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 1248 in human 18S rRNA. Thus, appears to be the methyltransferase involved in the biosynthesis of the hypermodified N1-methyl-N3-(3-amino-3-carboxypropyl) pseudouridine (m1acp3-Psi) conserved in eukaryotic 18S rRNA.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q92979|NEP1_HUMAN Ribosomal RNA small subunit methyltransferase NEP1 OS=Homo sapiens GN=EMG1 PE=1 SV=4

 Score =  153 bits (387), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 72/134 (53%), Positives = 96/134 (71%), Gaps = 1/134 (0%)

Query: 89  VIFVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTK 148
           +I VLE ASLE  KVGK+Y++LN D H + L +N ++P + RPDI HQ+LL ++DS L +
Sbjct: 43  LIVVLEGASLETVKVGKTYELLNCDKHKSILLKNGRDPGEARPDITHQSLLMLMDSPLNR 102

Query: 149 AGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKN 208
           AG LQ VY+ T K VL EV P  R+PRT+ RF G+M+QLL KLS+ A    +KLL+VIKN
Sbjct: 103 AGLLQ-VYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKN 161

Query: 209 PVTQYLPVNSRKIG 222
           PV+ + PV   K+G
Sbjct: 162 PVSDHFPVGCMKVG 175

Involved in 40S ribosomal subunit biogenesis and 18S rRNA processing. Specifically catalyzes the N1-methylation of pseudouridine at position 1248 (Psi1248) in 18S rRNA. Thus, appears to be the methyltransferase involved in the biosynthesis of the hypermodified N1-methyl-N3-(3-amino-3-carboxypropyl) pseudouridine (m1acp3-Psi) in position 1248 in 18S rRNA. Is not able to methylate uridine at this position.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q06287|NEP1_YEAST Ribosomal RNA small subunit methyltransferase NEP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=EMG1 PE=1 SV=1

 Score =  152 bits (384), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 79/158 (50%), Positives = 108/158 (68%), Gaps = 14/158 (8%)

Query: 75  IPIAPS-----DQNTKRPGVIFVLEKASLEVAKV------GKSYQILNSDDHSNFLRRNN 123
           +P AP      D+ TKR  +I VL  ASLE  K+      G  Y +LN DDH   L++  
Sbjct: 24  VPQAPPVLTSKDKITKR--MIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKKMG 81

Query: 124 KNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGI 183
           ++ ++ RPDI HQ LL++LDS + KAG+LQ VY++T +G+L EV P VR+PRT+KRF+G+
Sbjct: 82  RDISEARPDITHQCLLTLLDSPINKAGKLQ-VYIQTSRGILIEVNPTVRIPRTFKRFSGL 140

Query: 184 MLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKI 221
           M+QLL KLSI +V   EKLL+VIKNP+T +LP   RK+
Sbjct: 141 MVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKV 178

Has an essential role in 40S ribosomal subunit biogenesis and 18S rRNA processing. Probably catalyzes the N1-methylation of pseudouridine at position 1189 (Psi1189) in 18S rRNA. Thus, is most likely the methyltransferase involved in the biosynthesis of the hypermodified N1-methyl-N3-(3-amino-3-carboxypropyl) pseudouridine (m1acp3-Psi) in position 1189 in 18S rRNA. Is also involved in ribosome assembly.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9P8P7|NEP1_CANAX Ribosomal RNA small subunit methyltransferase NEP1 OS=Candida albicans GN=NEP1 PE=3 SV=1

 Score =  151 bits (382), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 77/158 (48%), Positives = 108/158 (68%), Gaps = 14/158 (8%)

Query: 75  IPIAPS-----DQNTKRPGVIFVLEKASLEVAKV------GKSYQILNSDDHSNFLRRNN 123
           +P+ P+     D+ T+R  +I VL +A LE  K+      G  + +LN DDH   LR+  
Sbjct: 39  VPVQPTALTSRDKTTQR--LIVVLSQACLETYKMNSGGPGGDRFALLNCDDHQGLLRKMG 96

Query: 124 KNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGI 183
           ++ A+ RPDI HQ LL++LDS + KAGRLQ VY++T +GVL EV P VR+PRT+KRF+G+
Sbjct: 97  RDIAEARPDITHQCLLTLLDSPINKAGRLQ-VYIQTARGVLIEVNPSVRIPRTFKRFSGL 155

Query: 184 MLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKI 221
           M+QLL KLSI +   +E LL+VIKNP+T +LP   RK+
Sbjct: 156 MVQLLHKLSIRSENSKEVLLKVIKNPITDHLPTKCRKV 193

Involved in 40S ribosomal subunit biogenesis and 18S rRNA processing. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 1189 in S.cerevisiae 18S rRNA. Thus, appears to be the methyltransferase involved in the biosynthesis of the hypermodified N1-methyl-N3-(3-amino-3-carboxypropyl) pseudouridine (m1acp3-Psi) conserved in eukaryotic 18S rRNA.

Candida albicans (taxid: 5476)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9W4J5|NEP1_DROME Ribosomal RNA small subunit methyltransferase NEP1 OS=Drosophila melanogaster GN=CG3527 PE=3 SV=2

 Score =  145 bits (365), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 66/132 (50%), Positives = 91/132 (68%), Gaps = 1/132 (0%)

Query: 89  VIFVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTK 148
           +I VLE A LE  KV  ++++LN DDH+  +R+N ++P   RPDI HQ LL + DS L +
Sbjct: 43  LIIVLEGAQLETVKVHNTFELLNCDDHAGIMRKNQRDPGSCRPDITHQCLLMLFDSPLNR 102

Query: 149 AGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKN 208
           AG LQ V+VRT+  VL E+ P  R+PRT+KRFAG+M+QLL K  I A     +L+ VIKN
Sbjct: 103 AGLLQ-VFVRTEHNVLIEINPQTRIPRTFKRFAGLMVQLLHKFQIRANDSSRRLMSVIKN 161

Query: 209 PVTQYLPVNSRK 220
           P+T ++PV  +K
Sbjct: 162 PITDHVPVGCKK 173

Involved in 40S ribosomal subunit biogenesis and 18S rRNA processing. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 1248 in human 18S rRNA. Thus, appears to be the methyltransferase involved in the biosynthesis of the hypermodified N1-methyl-N3-(3-amino-3-carboxypropyl) pseudouridine (m1acp3-Psi) conserved in eukaryotic 18S rRNA.

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q96UP2|NEP1_CANGA Ribosomal RNA small subunit methyltransferase NEP1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=NEP1 PE=3 SV=1

 Score =  135 bits (341), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/150 (49%), Positives = 97/150 (64%), Gaps = 3/150 (2%)

Query: 74  GIPIAPSDQNTKRPGVIFVLEKASLEVAKVGKS-YQILNSDDHSNFLRRNNKNPADYRPD 132
           G P   S    + P +  VL +ASLE          +LN DDH   LR+  ++ A+ RPD
Sbjct: 10  GGPNNSSVTKKQEPRLYVVLCEASLETYTSNDHRTSLLNCDDHQGILRKMGRDIAEARPD 69

Query: 133 IVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLS 192
           I HQ LL++LDS + KAG LQ VY+ T K VL EV P VR+PRT+KRF+G+M+QLL KLS
Sbjct: 70  ITHQCLLTLLDSPINKAGLLQ-VYILTKKNVLIEVNPSVRIPRTFKRFSGLMVQLLHKLS 128

Query: 193 ITAV-GKREKLLRVIKNPVTQYLPVNSRKI 221
           I ++      LLRV+KNPVT+YLP + RK+
Sbjct: 129 IRSMESSNTHLLRVVKNPVTKYLPADCRKV 158

Involved in 40S ribosomal subunit biogenesis and 18S rRNA processing. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 1189 in S.cerevisiae 18S rRNA. Thus, appears to be the methyltransferase involved in the biosynthesis of the hypermodified N1-methyl-N3-(3-amino-3-carboxypropyl) pseudouridine (m1acp3-Psi) conserved in eukaryotic 18S rRNA.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|O50087|NEP1_PYRHO Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=nep1 PE=3 SV=1

 Score = 65.5 bits (158), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/97 (44%), Positives = 54/97 (55%), Gaps = 4/97 (4%)

Query: 109 ILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVK 168
           IL+S  H   LR+        RPDIVH  LL+ LDS L K  RL+ VYV T    +  +K
Sbjct: 44  ILDSTYHHAALRQLEDGERRGRPDIVHICLLNALDSILNKEDRLR-VYVHTRNDYVIYIK 102

Query: 169 PHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRV 205
           P  RLPR Y RF G+M  L +K    AV +  +LLR+
Sbjct: 103 PETRLPRNYNRFIGLMENLFEK---GAVPEDLELLRM 136

Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA.

Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (taxid: 70601)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9V0M0|NEP1_PYRAB Ribosomal RNA small subunit methyltransferase Nep1 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=nep1 PE=3 SV=1

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 54/97 (55%), Gaps = 4/97 (4%)

Query: 109 ILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVK 168
           IL+S  H   L++        RPDIVH  LL+ LDS L K  RL+ VYV T    +  +K
Sbjct: 44  ILDSTYHHAALKQLEDGERRGRPDIVHICLLNALDSILNKEDRLR-VYVHTRNDYVIYIK 102

Query: 169 PHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRV 205
           P  RLPR Y RF G+M  L +K    AV +  +LLR+
Sbjct: 103 PETRLPRNYNRFIGLMESLFEK---GAVPEDLELLRL 136

Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA.

Pyrococcus abyssi (strain GE5 / Orsay) (taxid: 272844)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
255581478	294	Nucleolar essential protein, putative [R	0.899	0.731	0.707	2e-80
297739930	319	unnamed protein product [Vitis vinifera]	0.832	0.623	0.671	2e-75
225441240	271	PREDICTED: ribosomal RNA small subunit m	0.832	0.734	0.671	4e-75
388522811	272	unknown [Lotus japonicus]	0.836	0.735	0.648	2e-73
225465341	271	PREDICTED: ribosomal RNA small subunit m	0.832	0.734	0.680	4e-73
224086843	284	predicted protein [Populus trichocarpa]	0.627	0.528	0.88	8e-72
358248388	276	uncharacterized protein LOC100788480 [Gl	0.849	0.735	0.618	2e-71
255627521	253	unknown [Glycine max]	0.853	0.806	0.611	5e-71
15230180	298	nucleolar essential protein-related prot	0.924	0.741	0.619	6e-70
358248662	282	uncharacterized protein LOC100778294 [Gl	0.878	0.744	0.621	9e-69

>gi|255581478|ref|XP_002531546.1| Nucleolar essential protein, putative [Ricinus communis] gi|223528837|gb|EEF30840.1| Nucleolar essential protein, putative [Ricinus communis]

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 162/229 (70%), Positives = 187/229 (81%), Gaps = 14/229 (6%)

Query: 1   MVRAFKMKGQKRKKKRDEKYDREEEEEEKEEVEEEELNDSGKRAKLEKTS---QNDNKKG 57
           MVR + +KG KRKK R+EKYD+  +E +      E+  +S KRA L KT    +N +KK 
Sbjct: 1   MVRPYGIKGPKRKK-REEKYDKVGDEVD------EQTEESAKRAMLSKTEMPLENCSKKT 53

Query: 58  EEDGQEEKDVVVHE----MEGIPIAPSDQNTKRPGVIFVLEKASLEVAKVGKSYQILNSD 113
           E++ + ++   +      MEGIPI PSD  TK+PGVIFVLEKASLEVAKVGK+YQILNSD
Sbjct: 54  EQEEEGDEGEELEGEVQEMEGIPIMPSDSKTKKPGVIFVLEKASLEVAKVGKTYQILNSD 113

Query: 114 DHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRL 173
           DH+NFLR+NNKNPADYRPDIV+QALLSILDS L KAGRLQAVYV+T+KGVLFEVKP+VR+
Sbjct: 114 DHANFLRKNNKNPADYRPDIVYQALLSILDSPLNKAGRLQAVYVKTEKGVLFEVKPYVRI 173

Query: 174 PRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIG 222
           PRTYKRF GIMLQLLQKLSITA GKREKLLRVIKNPVTQYLPVNSRKIG
Sbjct: 174 PRTYKRFTGIMLQLLQKLSITAAGKREKLLRVIKNPVTQYLPVNSRKIG 222

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739930|emb|CBI30112.3| unnamed protein product [Vitis vinifera]

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 149/222 (67%), Positives = 173/222 (77%), Gaps = 23/222 (10%)

Query: 1   MVRAFKMKGQKRKKKRDEKYDREEEEEEKEEVEEEELNDSGKRAKLEKTSQNDNKKGEED 60
           MVR + +KG KRK+ R+E YD+EE    K+ +EEE             T+  D  K EE 
Sbjct: 49  MVRPYTIKGHKRKR-REENYDKEEV---KQLLEEET----------AATATQDENKAEE- 93

Query: 61  GQEEKDVVVHEMEGIPIAPSDQNTKRPGVIFVLEKASLEVAKVGKSYQILNSDDHSNFLR 120
                  + HE+ GIP+ P   N K  GV F+LE+A LEVAKVGKSYQ+L+S+DH+NFLR
Sbjct: 94  -------ITHELPGIPLVPFKSNNKT-GVTFILERACLEVAKVGKSYQLLSSEDHANFLR 145

Query: 121 RNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRF 180
           +NNKNPADYRPDI+HQALL+ILDS L KAGRL+AVYVRT+KGVLFEVKPHVR+PRTYKRF
Sbjct: 146 KNNKNPADYRPDILHQALLTILDSPLNKAGRLRAVYVRTEKGVLFEVKPHVRIPRTYKRF 205

Query: 181 AGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIG 222
           +GIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIG
Sbjct: 206 SGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIG 247

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441240|ref|XP_002273311.1| PREDICTED: ribosomal RNA small subunit methyltransferase nep-1 [Vitis vinifera]

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 149/222 (67%), Positives = 173/222 (77%), Gaps = 23/222 (10%)

Query: 1   MVRAFKMKGQKRKKKRDEKYDREEEEEEKEEVEEEELNDSGKRAKLEKTSQNDNKKGEED 60
           MVR + +KG KRK+ R+E YD+EE    K+ +EEE             T+  D  K EE 
Sbjct: 1   MVRPYTIKGHKRKR-REENYDKEEV---KQLLEEET----------AATATQDENKAEE- 45

Query: 61  GQEEKDVVVHEMEGIPIAPSDQNTKRPGVIFVLEKASLEVAKVGKSYQILNSDDHSNFLR 120
                  + HE+ GIP+ P   N K  GV F+LE+A LEVAKVGKSYQ+L+S+DH+NFLR
Sbjct: 46  -------ITHELPGIPLVPFKSNNKT-GVTFILERACLEVAKVGKSYQLLSSEDHANFLR 97

Query: 121 RNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRF 180
           +NNKNPADYRPDI+HQALL+ILDS L KAGRL+AVYVRT+KGVLFEVKPHVR+PRTYKRF
Sbjct: 98  KNNKNPADYRPDILHQALLTILDSPLNKAGRLRAVYVRTEKGVLFEVKPHVRIPRTYKRF 157

Query: 181 AGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIG 222
           +GIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIG
Sbjct: 158 SGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIG 199

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522811|gb|AFK49467.1| unknown [Lotus japonicus]

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 144/222 (64%), Positives = 171/222 (77%), Gaps = 22/222 (9%)

Query: 1   MVRAFKMKGQKRKKKRDEKYDREEEEEEKEEVEEEELNDSGKRAKLEKTSQNDNKKGEED 60
           M R F MKG+KRK K + KYDREE+E+E+ + +   L ++      E  + N     EED
Sbjct: 1   MTRPFGMKGRKRKDK-EAKYDREEDEDEQVQPKRPMLQNA------EVAAAN-----EED 48

Query: 61  GQEEKDVVVHEMEGIPIAPSDQNTKRPGVIFVLEKASLEVAKVGKSYQILNSDDHSNFLR 120
                     E+ GIPI PSD  +  P VIF+LE+ASLEVAKVGK+YQ+LNSDDH+NFLR
Sbjct: 49  ----------ELVGIPIMPSDHKSDNPNVIFILERASLEVAKVGKTYQLLNSDDHANFLR 98

Query: 121 RNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRF 180
           +NNKNP DYRPDI HQALLSILDS L KAGRLQAVY++T+KGVL EVKP+VR+PRT+KRF
Sbjct: 99  KNNKNPGDYRPDITHQALLSILDSPLNKAGRLQAVYIKTEKGVLIEVKPYVRIPRTFKRF 158

Query: 181 AGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIG 222
           +G+MLQLLQKLSI+A GK EKLLR IKNPVTQYLPVNSRKIG
Sbjct: 159 SGVMLQLLQKLSISAAGKHEKLLRTIKNPVTQYLPVNSRKIG 200

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465341|ref|XP_002275293.1| PREDICTED: ribosomal RNA small subunit methyltransferase nep-1 [Vitis vinifera] gi|296085405|emb|CBI29137.3| unnamed protein product [Vitis vinifera]

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 151/222 (68%), Positives = 173/222 (77%), Gaps = 23/222 (10%)

Query: 1   MVRAFKMKGQKRKKKRDEKYDREEEEEEKEEVEEEELNDSGKRAKLEKTSQNDNKKGEED 60
           MVR + +KG KRKK R+E YDREE E+  EE                 T+  D KK EE 
Sbjct: 1   MVRPYAIKGHKRKK-REENYDREEVEQLLEEETAA-------------TATQDEKKAEE- 45

Query: 61  GQEEKDVVVHEMEGIPIAPSDQNTKRPGVIFVLEKASLEVAKVGKSYQILNSDDHSNFLR 120
                  V  E+ GIP+ PS+ N K  GV F+LE+A LEVAKVGKSYQ+L+S+DH+NFLR
Sbjct: 46  -------VTLELPGIPLVPSNLNNKT-GVTFILERACLEVAKVGKSYQLLSSEDHANFLR 97

Query: 121 RNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRF 180
           +NNKNPA+YRPDI+HQALL+ILDS L KAGRL+AVYVRT+KGVLFEVKPHVR+PRTYKRF
Sbjct: 98  KNNKNPAEYRPDILHQALLTILDSPLNKAGRLRAVYVRTEKGVLFEVKPHVRIPRTYKRF 157

Query: 181 AGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIG 222
           +GIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIG
Sbjct: 158 SGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIG 199

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224086843|ref|XP_002307982.1| predicted protein [Populus trichocarpa] gi|222853958|gb|EEE91505.1| predicted protein [Populus trichocarpa]

 Score =  275 bits (704), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 132/150 (88%), Positives = 142/150 (94%)

Query: 73  EGIPIAPSDQNTKRPGVIFVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPD 132
           EGIPI PS Q  K+PGVIFVLEKASLEVAKVGKSYQILNS++H+NFLRRN KNPADYRPD
Sbjct: 63  EGIPIVPSHQTGKKPGVIFVLEKASLEVAKVGKSYQILNSEEHANFLRRNKKNPADYRPD 122

Query: 133 IVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLS 192
           I++QALLSILDS L KAGRL+AVYV+TDKGVLFEVKPHVR+PRTYKRFAGIMLQLLQKLS
Sbjct: 123 IIYQALLSILDSPLNKAGRLRAVYVKTDKGVLFEVKPHVRIPRTYKRFAGIMLQLLQKLS 182

Query: 193 ITAVGKREKLLRVIKNPVTQYLPVNSRKIG 222
           ITAVG REKLLRVIKNPVTQYLP+NSRKIG
Sbjct: 183 ITAVGNREKLLRVIKNPVTQYLPLNSRKIG 212

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248388|ref|NP_001239618.1| uncharacterized protein LOC100788480 [Glycine max] gi|255636540|gb|ACU18608.1| unknown [Glycine max]

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 138/223 (61%), Positives = 171/223 (76%), Gaps = 20/223 (8%)

Query: 1   MVRAFKMKGQKRKKKRDEKYDREEEEEE-KEEVEEEELNDSGKRAKLEKTSQNDNKKGEE 59
           M R + +KG +++K  + KYD E++E + K+ V E E N      + ++T + D      
Sbjct: 1   MTRPYGVKGGRKRKHAEPKYDEEDQETQPKKAVVEVEHNKE--EEQQQQTPEGD------ 52

Query: 60  DGQEEKDVVVHEMEGIPIAPSDQNTKRPGVIFVLEKASLEVAKVGKSYQILNSDDHSNFL 119
                      E+ GIPI PS+ NT +P VIF+LEKASLEVAKVGK+YQ+LNSDDH+NFL
Sbjct: 53  -----------ELSGIPITPSENNTNKPNVIFILEKASLEVAKVGKTYQLLNSDDHANFL 101

Query: 120 RRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKR 179
           R+NNKNP DYRPDI HQ+LLSILDS L KAGRL++VY+RT+KGVL EVKP VR+PRT+KR
Sbjct: 102 RKNNKNPGDYRPDITHQSLLSILDSPLNKAGRLRSVYIRTEKGVLIEVKPFVRIPRTFKR 161

Query: 180 FAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIG 222
           FAG+ML+LLQKLSI+AVGKREKLLR IKNPVTQYLP+NSRKIG
Sbjct: 162 FAGVMLELLQKLSISAVGKREKLLRTIKNPVTQYLPINSRKIG 204

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255627521|gb|ACU14105.1| unknown [Glycine max]

 Score =  273 bits (697), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 137/224 (61%), Positives = 170/224 (75%), Gaps = 20/224 (8%)

Query: 1   MVRAFKMKGQKRKKKRDEKYDREEEEEE-KEEVEEEELNDSGKRAKLEKTSQNDNKKGEE 59
           M R + +KG +++K  + KYD E++E + K+ V E E N      + ++T + D      
Sbjct: 1   MTRPYGVKGGRKRKHAEPKYDEEDQETQPKKAVVEVEHNKE--EEQQQQTPEGD------ 52

Query: 60  DGQEEKDVVVHEMEGIPIAPSDQNTKRPGVIFVLEKASLEVAKVGKSYQILNSDDHSNFL 119
                      E+ GIPI PS+ NT +P VIF+LEKASLEV KVGK+YQ+LNSDDH+NFL
Sbjct: 53  -----------ELSGIPITPSENNTNKPNVIFILEKASLEVGKVGKTYQLLNSDDHANFL 101

Query: 120 RRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKR 179
           R+NNKNP DYRPDI HQ+LLSILDS L KAGRL++VY+RT+KGVL EVKP VR+PRT+KR
Sbjct: 102 RKNNKNPGDYRPDITHQSLLSILDSPLNKAGRLRSVYIRTEKGVLIEVKPFVRIPRTFKR 161

Query: 180 FAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGC 223
           FAG+ML+LLQKLSI+AVGKREKLLR IKNPVTQYLP+NSRKIG 
Sbjct: 162 FAGVMLELLQKLSISAVGKREKLLRTIKNPVTQYLPINSRKIGL 205

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230180|ref|NP_191259.1| nucleolar essential protein-related protein [Arabidopsis thaliana] gi|6911870|emb|CAB72170.1| putative protein [Arabidopsis thaliana] gi|28466945|gb|AAO44081.1| At3g57000 [Arabidopsis thaliana] gi|110735698|dbj|BAE99829.1| hypothetical protein [Arabidopsis thaliana] gi|332646076|gb|AEE79597.1| nucleolar essential protein-related protein [Arabidopsis thaliana]

 Score =  269 bits (688), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 140/226 (61%), Positives = 180/226 (79%), Gaps = 5/226 (2%)

Query: 1   MVRAFKMKGQKRKKKRDEKYDREEEE-EEKEEVEEEE-LNDSGKRAKLEKTSQNDNKKGE 58
           MVR + +K  KRK+ R+E+YD+EE+E EE+ + E+++   +S K+AK E TS+ +    E
Sbjct: 1   MVRPYGIKVNKRKE-REERYDKEEDEVEEQPKFEQKQKARESSKKAKKESTSRAEEDNDE 59

Query: 59  EDGQEEKDVVVHEM-EGIPIAPSDQNTKRPGVIFVLEKASLEVAKVGKSYQILNSDDHSN 117
           E+   E      ++  GIPI  +  N ++ G++FVLEKASLEVAKVGK+YQ+LNSDDH+N
Sbjct: 60  EEVTVEATAAAEDIVGGIPIVLNAPNKEKSGIVFVLEKASLEVAKVGKTYQLLNSDDHAN 119

Query: 118 FLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTY 177
           FL++NN+NPADYRPDI HQALL ILDS + KAGRL+AVYVRT+KGVLFEVKPHVR+PRT+
Sbjct: 120 FLKKNNRNPADYRPDITHQALLMILDSPVNKAGRLKAVYVRTEKGVLFEVKPHVRIPRTF 179

Query: 178 KRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQ-YLPVNSRKIG 222
           KRFAGIMLQLLQKLSITAV  REKLLR +KNP+ + +LPVNS +IG
Sbjct: 180 KRFAGIMLQLLQKLSITAVNSREKLLRCVKNPIEEHHLPVNSHRIG 225

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248662|ref|NP_001239919.1| uncharacterized protein LOC100778294 [Glycine max] gi|255636941|gb|ACU18803.1| unknown [Glycine max]

 Score =  265 bits (678), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 138/222 (62%), Positives = 168/222 (75%), Gaps = 12/222 (5%)

Query: 1   MVRAFKMKGQKRKKKRDEKYDREEEEEEKEEVEEEELNDSGKRAKLEKTSQNDNKKGEED 60
           M R F +KG +++K  + KYD    +EE+EE  + +          E+  +      E+D
Sbjct: 1   MTRPFGVKGGRKRKHAEPKYD--AHDEEEEEETQPKKTVVEVEHNQEEEEETPAPAPEDD 58

Query: 61  GQEEKDVVVHEMEGIPIAPSDQNTKRPGVIFVLEKASLEVAKVGKSYQILNSDDHSNFLR 120
           G          + GIPIAPS  NT +P VIF+LEKASLEVAKVGK+YQ+LNSDDH+NFLR
Sbjct: 59  G----------LSGIPIAPSANNTNKPNVIFILEKASLEVAKVGKTYQLLNSDDHANFLR 108

Query: 121 RNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRF 180
           +NNKNP DYRPDI HQ+LLSILDS L KAGRL++VY+RT+KGVL EVKP VR+PRT+KRF
Sbjct: 109 KNNKNPGDYRPDITHQSLLSILDSPLNKAGRLRSVYIRTEKGVLIEVKPFVRIPRTFKRF 168

Query: 181 AGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIG 222
           AG+ML+LLQKLSI+AVGKREKLLR IKNPVTQYLP+NSRKIG
Sbjct: 169 AGVMLELLQKLSISAVGKREKLLRTIKNPVTQYLPINSRKIG 210

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
TAIR|locus:2080645	298	AT3G57000 [Arabidopsis thalian	0.769	0.617	0.645	2.2e-59
POMBASE|SPAC18G6.07c	359	mra1 "rRNA (pseudouridine) met	0.589	0.392	0.587	5.5e-38
WB|WBGene00012652	231	Y39A1A.14 [Caenorhabditis eleg	0.652	0.675	0.512	3.9e-37
UNIPROTKB|Q9XX15	231	Y39A1A.14 "Ribosomal RNA small	0.652	0.675	0.512	3.9e-37
ASPGD|ASPL0000035794	260	AN2759 [Emericella nidulans (t	0.602	0.553	0.515	2.7e-36
UNIPROTKB|F1N532	244	EMG1 "Uncharacterized protein"	0.556	0.545	0.544	8.3e-35
UNIPROTKB|I3LPQ4	244	EMG1 "Uncharacterized protein"	0.556	0.545	0.544	8.3e-35
RGD|1307665	244	Emg1 "EMG1 nucleolar protein h	0.556	0.545	0.544	8.3e-35
UNIPROTKB|E2RKH8	244	EMG1 "Uncharacterized protein"	0.556	0.545	0.544	1.1e-34
MGI|MGI:1315195	244	Emg1 "EMG1 nucleolar protein h	0.556	0.545	0.544	1.1e-34

TAIR|locus:2080645 AT3G57000 [Arabidopsis thaliana (taxid:3702)]

 Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
 Identities = 120/186 (64%), Positives = 147/186 (79%)

Query:    39 DSGKRAKLEKTSQNDNXXXXXXXXXXXXXXXHEMEG-IPIAPSDQNTKRPGVIFVLEKAS 97
             +S K+AK E TS+ +                 ++ G IPI  +  N ++ G++FVLEKAS
Sbjct:    40 ESSKKAKKESTSRAEEDNDEEEVTVEATAAAEDIVGGIPIVLNAPNKEKSGIVFVLEKAS 99

Query:    98 LEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYV 157
             LEVAKVGK+YQ+LNSDDH+NFL++NN+NPADYRPDI HQALL ILDS + KAGRL+AVYV
Sbjct:   100 LEVAKVGKTYQLLNSDDHANFLKKNNRNPADYRPDITHQALLMILDSPVNKAGRLKAVYV 159

Query:   158 RTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQY-LPV 216
             RT+KGVLFEVKPHVR+PRT+KRFAGIMLQLLQKLSITAV  REKLLR +KNP+ ++ LPV
Sbjct:   160 RTEKGVLFEVKPHVRIPRTFKRFAGIMLQLLQKLSITAVNSREKLLRCVKNPIEEHHLPV 219

Query:   217 NSRKIG 222
             NS +IG
Sbjct:   220 NSHRIG 225

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

POMBASE|SPAC18G6.07c mra1 "rRNA (pseudouridine) methyltransferase Mra1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 87/148 (58%), Positives = 107/148 (72%)

Query:    77 IAPSDQNTKRPGVIFVLEKASLEVAKVGKS----YQILNSDDHSNFLRRNNKNPADYRPD 132
             I   D  T+R  +I VL++A LE+ KVGK+    YQ+LN DDH   L++ N+N A  RPD
Sbjct:   140 IGSHDTTTQR--LIVVLDQACLEIYKVGKAKDAKYQLLNCDDHQGILKKLNRNIAQARPD 197

Query:   133 IVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLS 192
             I HQ LL++LDS L KAGRLQ VY+ T K VL EV P VR+PRT+KRF+G+M+QLL KLS
Sbjct:   198 ITHQCLLTLLDSPLNKAGRLQ-VYIHTAKKVLIEVNPSVRIPRTFKRFSGLMVQLLHKLS 256

Query:   193 ITAVGKREKLLRVIKNPVTQYLPVNSRK 220
             I +V   EKLL+VIKNPVT YLP N RK
Sbjct:   257 IRSVNGNEKLLKVIKNPVTDYLPPNCRK 284

GO:0000747 "conjugation with cellular fusion" evidence=IGI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0019236 "response to pheromone" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0032040 "small-subunit processome" evidence=ISO

GO:0042274 "ribosomal small subunit biogenesis" evidence=ISO

GO:0070037 "rRNA (pseudouridine) methyltransferase activity" evidence=ISO;ISS

GO:0070475 "rRNA base methylation" evidence=ISO

WB|WBGene00012652 Y39A1A.14 [Caenorhabditis elegans (taxid:6239)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 82/160 (51%), Positives = 112/160 (70%)

Query:    80 SDQNTKRPGVIFV-LEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQAL 138
             +D   +   +++V LE  SLE AKVG  Y IL+SD H+NFLR+  K+PADYRPDI+HQ L
Sbjct:    18 TDNQLEDKKILYVVLEGCSLETAKVGGEYAILSSDKHANFLRKQKKDPADYRPDILHQCL 77

Query:   139 LSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGK 198
             L++LDS L +AG+L+ V+ RT K VL +V P  R+PRT+ RF G+M+QLL KLSI A   
Sbjct:    78 LNLLDSPLNRAGKLR-VFFRTSKNVLVDVSPQCRIPRTFDRFCGLMVQLLHKLSIRAAET 136

Query:   199 REKLLRVIKNPVTQYLPVNSRKIGCLLARQVSHIVQKNWL 238
              +KL+ V+KNPV+ +LPV SRK+  L++  V  +   N L
Sbjct:   137 TQKLMSVVKNPVSNHLPVGSRKM--LMSFNVPELTMANKL 174

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

UNIPROTKB|Q9XX15 Y39A1A.14 "Ribosomal RNA small subunit methyltransferase nep-1" [Caenorhabditis elegans (taxid:6239)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 82/160 (51%), Positives = 112/160 (70%)

Query:    80 SDQNTKRPGVIFV-LEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQAL 138
             +D   +   +++V LE  SLE AKVG  Y IL+SD H+NFLR+  K+PADYRPDI+HQ L
Sbjct:    18 TDNQLEDKKILYVVLEGCSLETAKVGGEYAILSSDKHANFLRKQKKDPADYRPDILHQCL 77

Query:   139 LSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGK 198
             L++LDS L +AG+L+ V+ RT K VL +V P  R+PRT+ RF G+M+QLL KLSI A   
Sbjct:    78 LNLLDSPLNRAGKLR-VFFRTSKNVLVDVSPQCRIPRTFDRFCGLMVQLLHKLSIRAAET 136

Query:   199 REKLLRVIKNPVTQYLPVNSRKIGCLLARQVSHIVQKNWL 238
              +KL+ V+KNPV+ +LPV SRK+  L++  V  +   N L
Sbjct:   137 TQKLMSVVKNPVSNHLPVGSRKM--LMSFNVPELTMANKL 174

GO:0070037 "rRNA (pseudouridine) methyltransferase activity" evidence=ISS

ASPGD|ASPL0000035794 AN2759 [Emericella nidulans (taxid:162425)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 81/157 (51%), Positives = 113/157 (71%)

Query:    75 IPIAPSDQNTKRPGVIFVLEKASLEVAKV---GKS-------YQILNSDDHSNFLRRNNK 124
             +PIAP+D+ T+R  +I VL  ASLE  K    G++       Y +LNSD+H   +R+ N+
Sbjct:    33 VPIAPNDKETQR--LIVVLSHASLETFKASHGGRNGTARDEKYSLLNSDEHIGVMRKMNR 90

Query:   125 NPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIM 184
             + ++ RPDI HQ LL++LDS + KAG+LQ +Y+ T KGVL EV P VR+PRT+KRFAG+M
Sbjct:    91 DISEARPDITHQCLLTLLDSPVNKAGKLQ-IYIHTAKGVLIEVNPSVRIPRTFKRFAGLM 149

Query:   185 LQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKI 221
             +QLL +LSI +   +EKLL+VIKNP+T +LP N RK+
Sbjct:   150 VQLLHRLSIRSTNSQEKLLKVIKNPITDHLPPNCRKV 186

GO:0000747 "conjugation with cellular fusion" evidence=IEA

GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0070475 "rRNA base methylation" evidence=IEA

GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0030686 "90S preribosome" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005880 "nuclear microtubule" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0070037 "rRNA (pseudouridine) methyltransferase activity" evidence=IEA

UNIPROTKB|F1N532 EMG1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 73/134 (54%), Positives = 96/134 (71%)

Query:    89 VIFVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTK 148
             +I VLE ASLE  KVGK+Y++LN D H + L +N ++P + RPDI HQ+LL ++DS L +
Sbjct:    43 LIVVLEGASLETVKVGKTYELLNCDKHKSMLLKNGRDPGEVRPDIAHQSLLMLMDSPLNR 102

Query:   149 AGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKN 208
             AG LQ VY+ T K VL EV P  R+PRT+ RF G+M+QLL KLS+ A    +KLL+VIKN
Sbjct:   103 AGLLQ-VYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKN 161

Query:   209 PVTQYLPVNSRKIG 222
             PV+ + PV   KIG
Sbjct:   162 PVSDHFPVGCMKIG 175

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|I3LPQ4 EMG1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 73/134 (54%), Positives = 96/134 (71%)

Query:    89 VIFVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTK 148
             +I VLE ASLE  KVGK+Y++LN D H + L +N ++P + RPDI HQ+LL ++DS L +
Sbjct:    43 LIVVLEGASLETVKVGKTYELLNCDKHKSMLLKNGRDPGEVRPDIAHQSLLMLMDSPLNR 102

Query:   149 AGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKN 208
             AG LQ VY+ T K VL EV P  R+PRT+ RF G+M+QLL KLS+ A    +KLL+VIKN
Sbjct:   103 AGLLQ-VYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKN 161

Query:   209 PVTQYLPVNSRKIG 222
             PV+ + PV   KIG
Sbjct:   162 PVSDHFPVGCMKIG 175

GO:0008168 "methyltransferase activity" evidence=IEA

RGD|1307665 Emg1 "EMG1 nucleolar protein homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 73/134 (54%), Positives = 96/134 (71%)

Query:    89 VIFVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTK 148
             +I VLE ASLE  KVGK+Y++LN D H + L +N ++P + RPDI HQ+LL ++DS L +
Sbjct:    43 LIVVLEGASLETVKVGKTYELLNCDKHKSMLLKNGRDPGEVRPDITHQSLLMLMDSPLNR 102

Query:   149 AGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKN 208
             AG LQ VY+ T K VL EV P  R+PRT+ RF G+M+QLL KLS+ A    +KLL+VIKN
Sbjct:   103 AGLLQ-VYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKN 161

Query:   209 PVTQYLPVNSRKIG 222
             PV+ + PV   KIG
Sbjct:   162 PVSDHFPVGCMKIG 175

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0070037 "rRNA (pseudouridine) methyltransferase activity" evidence=ISO

UNIPROTKB|E2RKH8 EMG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 73/134 (54%), Positives = 96/134 (71%)

Query:    89 VIFVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTK 148
             +I VLE ASLE  KVGK+Y++LN D H + L +N ++P + RPDI HQ+LL ++DS L +
Sbjct:    43 LIVVLEGASLETVKVGKTYELLNCDKHKSVLLKNGRDPGEVRPDIAHQSLLMLMDSPLNR 102

Query:   149 AGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKN 208
             AG LQ VY+ T K VL EV P  R+PRT+ RF G+M+QLL KLS+ A    +KLL+VIKN
Sbjct:   103 AGLLQ-VYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKN 161

Query:   209 PVTQYLPVNSRKIG 222
             PV+ + PV   KIG
Sbjct:   162 PVSDHFPVGCMKIG 175

GO:0008168 "methyltransferase activity" evidence=IEA

MGI|MGI:1315195 Emg1 "EMG1 nucleolar protein homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 73/134 (54%), Positives = 96/134 (71%)

Query:    89 VIFVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTK 148
             +I VLE ASLE  KVGK+Y++LN D H + L +N ++P + RPDI HQ+LL ++DS L +
Sbjct:    43 LIVVLEGASLETVKVGKTYELLNCDRHKSMLLKNGRDPGEVRPDITHQSLLMLMDSPLNR 102

Query:   149 AGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKN 208
             AG LQ VY+ T K VL EV P  R+PRT+ RF G+M+QLL KLS+ A    +KLL+VIKN
Sbjct:   103 AGLLQ-VYIHTQKNVLIEVNPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKN 161

Query:   209 PVTQYLPVNSRKIG 222
             PV+ + PV   KIG
Sbjct:   162 PVSDHFPVGCMKIG 175

GO:0003723 "RNA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0070037 "rRNA (pseudouridine) methyltransferase activity" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XX15	NEP1_CAEEL	2, ., 1, ., 1, ., -	0.5510	0.6025	0.6233	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	239
pfam03587	200	pfam03587, EMG1, EMG1/NEP1 methyltransferase	3e-57
COG1756	223	COG1756, Mra1, Uncharacterized conserved protein [	1e-30
PRK04171	222	PRK04171, PRK04171, ribosome biogenesis protein; P	3e-18
pfam05432	291	pfam05432, BSP_II, Bone sialoprotein II (BSP-II)	4e-04

>gnl|CDD|217628 pfam03587, EMG1, EMG1/NEP1 methyltransferase

 Score =  180 bits (459), Expect = 3e-57
 Identities = 66/134 (49%), Positives = 87/134 (64%), Gaps = 4/134 (2%)

Query: 91  FVLEKASLEVAKVGK--SYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTK 148
            VLE+A+LE+    K   Y++L+SDDH   +++  K     RPDIVHQ LL +LDS L K
Sbjct: 1   IVLEEAALELVPREKKPGYELLDSDDHYAAMKKLKKKEKRGRPDIVHQCLLMLLDSPLNK 60

Query: 149 AGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKN 208
           AG L+ VY+ T  GVL EV P  R+PR Y RF G+M QLL+K  + A G  E LL+V+KN
Sbjct: 61  AGLLR-VYIHTRDGVLIEVSPETRVPRNYNRFVGLMEQLLKKGRVPAEGG-EPLLKVVKN 118

Query: 209 PVTQYLPVNSRKIG 222
           P+T  LP  ++KI 
Sbjct: 119 PLTDLLPEGAKKIL 132

Members of this family are essential for 40S ribosomal biogenesis. The structure of EMG1 has revealed that it is a novel member of the superfamily of alpha/beta knot fold methyltransferases. Length = 200

>gnl|CDD|224670 COG1756, Mra1, Uncharacterized conserved protein [Function unknown]

 Score =  112 bits (283), Expect = 1e-30
 Identities = 56/149 (37%), Positives = 77/149 (51%), Gaps = 9/149 (6%)

Query: 77  IAPSDQNTKRPGVIFVLEKASLEVAKVGKS----YQILNSDDHSNFLRRNNKNPADYRPD 132
           +A ++          V   A L  AK          + +S  H+   +  ++     RPD
Sbjct: 7   LAEAELELIPE--EIVNHPAVLRDAKRRGKRPEKIILDSSYHHTAMKKLEDRE-RRGRPD 63

Query: 133 IVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLS 192
           IVHQ LL++LDS L K G+L+ VY+ T    + EV P  RLPR Y RF G+M QLL+K  
Sbjct: 64  IVHQCLLTLLDSPLNKEGKLR-VYIHTRNDYVIEVNPETRLPRNYNRFIGLMEQLLKKGR 122

Query: 193 ITAVGKREKLLRVIKNPVTQYLPVNSRKI 221
           I + G  E LL V KNP+T  LP N++  
Sbjct: 123 IPSNGG-ETLLEVEKNPLTDLLPENNKVT 150

Length = 223

>gnl|CDD|235238 PRK04171, PRK04171, ribosome biogenesis protein; Provisional

 Score = 79.9 bits (198), Expect = 3e-18
 Identities = 35/76 (46%), Positives = 46/76 (60%), Gaps = 3/76 (3%)

Query: 130 RPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQ 189
           RPDIVH +LL  LDS L K G+L+ VY+ T    +  V P  RLP+ Y RF G+M QLL+
Sbjct: 60  RPDIVHISLLVALDSPLNKEGKLR-VYIHTRDDKVIYVNPETRLPKNYNRFVGLMEQLLK 118

Query: 190 KLSITAVGKREKLLRV 205
           +  +   G  E LL +
Sbjct: 119 EGRVPPNG--EPLLEI 132

Length = 222

>gnl|CDD|114172 pfam05432, BSP_II, Bone sialoprotein II (BSP-II)

 Score = 40.4 bits (94), Expect = 4e-04
 Identities = 25/97 (25%), Positives = 40/97 (41%)

Query: 8   KGQKRKKKRDEKYDREEEEEEKEEVEEEELNDSGKRAKLEKTSQNDNKKGEEDGQEEKDV 67
           K  K  +  +++ + EEEEEE+ EVEE E   +G      +    +   G ++G+E ++ 
Sbjct: 128 KATKEDESDEDEEEEEEEEEEEAEVEENEQGTNGTSTNSTEVDHGNGSSGGDNGEEGEEE 187

Query: 68  VVHEMEGIPIAPSDQNTKRPGVIFVLEKASLEVAKVG 104
            V E E      +   T  P   F       EV    
Sbjct: 188 SVTEAEAEGTTVAGPTTTSPNGGFQPTTPPQEVYGTT 224

Bone sialoprotein (BSP) is a major structural protein of the bone matrix that is specifically expressed by fully-differentiated osteoblasts. The expression of bone sialoprotein (BSP) is normally restricted to mineralised connective tissues of bones and teeth where it has been associated with mineral crystal formation. However, it has been found that ectopic expression of BSP occurs in various lesions, including oral and extraoral carcinomas, in which it has been associated with the formation of microcrystalline deposits and the metastasis of cancer cells to bone. Length = 291

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	239
KOG3073	236	consensus Protein required for 18S rRNA maturation	100.0
PF03587	202	EMG1: EMG1/NEP1 methyltransferase; InterPro: IPR00	100.0
PRK04171	222	ribosome biogenesis protein; Provisional	100.0
COG1756	223	Mra1 Uncharacterized conserved protein [Function u	100.0

>KOG3073 consensus Protein required for 18S rRNA maturation and 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.9e-61  Score=421.07  Aligned_cols=175  Identities=58%  Similarity=0.891  Sum_probs=161.4

Q ss_pred             hhhccccccccccccccccCCcccccchhhhhhhhhcCCCCCCCCCCCCCCcEEEEecCCchheeecCCeeeeecchhhH
Q 026378           37 LNDSGKRAKLEKTSQNDNKKGEEDGQEEKDVVVHEMEGIPIAPSDQNTKRPGVIFVLEKASLEVAKVGKSYQILNSDDHS  116 (239)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~livVLe~A~Le~~k~gk~~~LLn~d~H~  116 (239)
                      +.++...++.++++...+++|+|                 ..|    .+.+++||||++|+||++|+| +|+|||||+|.
T Consensus         2 ~~e~~~~~~~~~~~~~k~d~~~~-----------------~l~----~~~~~~ivVL~~a~le~~Kvg-~y~ll~~d~h~   59 (236)
T KOG3073|consen    2 AVESSRKAKKEKADRAKEDNDEE-----------------ALP----KTKKRLIVVLEGASLETAKVG-KYQLLNSDDHA   59 (236)
T ss_pred             cchhhhhcccccccccccCcccc-----------------ccc----ccCCcEEEEecCCCchhhhhh-heeeeccchhh
Confidence            34556677778888887777775                 112    568999999999999999999 89999999999


Q ss_pred             HHHHhCCCCCCCCCCcHHHHHHHHhhcchhhhcCCccEEEEEecCCeEEEEcCCCCCCcchhHHHHHHHHHHHhCccccC
Q 026378          117 NFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAV  196 (239)
Q Consensus       117 ~~m~kl~~~~~~~RPDIvHq~LL~LLDSPLNKaG~Lq~VYIhT~~g~lIeVsP~~RIPRty~RF~GLM~qLL~k~~I~~~  196 (239)
                      ++++|+++++.++||||+|||||+||||||||||+|| |||||..|+||||||++||||||+||+|||+||||+++|++.
T Consensus        60 ~~lkk~~rdp~d~rpDitHQ~Ll~LlDSPlNkAgkLq-Vyi~T~knvLiEvnp~~rIPrtfkrfsglMvqLLhKlsIra~  138 (236)
T KOG3073|consen   60 NFLKKNNRDPADYRPDITHQCLLMLLDSPLNKAGKLQ-VYIHTAKNVLIEVNPQVRIPRTFKRFSGLMVQLLHKLSIRAV  138 (236)
T ss_pred             HHHHhccCCHHhcCCcHHHHHHHHHhcCcccccceeE-EEEEccCceEEEecccccCCCCHHHHHHHHHHHHHHheEecc
Confidence            9999999999999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             CCccceEEEEecccccccCCCCeEEEEeeccceeeccc
Q 026378          197 GKREKLLRVIKNPVTQYLPVNSRKIGCLLARQVSHIVQ  234 (239)
Q Consensus       197 ~~~e~LLkviknplt~~LP~~~~kIglS~~g~~v~~~~  234 (239)
                      ++.+.||+||||||++|||+||+||||||+|+++.-.+
T Consensus       139 d~~~kLlkVvKNPVtdHlPv~~~Ki~lSf~~p~l~~~~  176 (236)
T KOG3073|consen  139 DGTEKLLKVVKNPVTDHLPVNSRKIGLSFSGPKLSNVR  176 (236)
T ss_pred             CchHHHHHHhcCcccccCCCCccEEeecCCCcccccHH
Confidence            99999999999999999999999999999999876433

>PF03587 EMG1: EMG1/NEP1 methyltransferase; InterPro: IPR005304 Members of this family are essential for 40S ribosomal biogenesis

Probab=100.00  E-value=7.6e-59  Score=403.27  Aligned_cols=143  Identities=49%  Similarity=0.684  Sum_probs=127.0

Q ss_pred             EEecCCchheeecCCeeeeecchhhHHHHHhCCCCCCCCCCcHHHHHHHHhhcchhhhcCCccEEEEEecCCeEEEEcCC
Q 026378           91 FVLEKASLEVAKVGKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPH  170 (239)
Q Consensus        91 vVLe~A~Le~~k~gk~~~LLn~d~H~~~m~kl~~~~~~~RPDIvHq~LL~LLDSPLNKaG~Lq~VYIhT~~g~lIeVsP~  170 (239)
                      |||++|+||+++.+.+++|||+|+|+++|+++++++++|||||||||||+||||||||+|+|+ |||||.+|+||+|||.
T Consensus         1 ivL~~a~LE~v~~~~~~~LLd~~~H~~~m~k~~~~~k~~RPDIvH~~LL~lldSpLNk~G~L~-VYIhT~~~~lI~V~p~   79 (202)
T PF03587_consen    1 IVLEEASLELVPRKPKYQLLDSSDHYNAMKKLPKDEKRGRPDIVHQCLLMLLDSPLNKAGKLQ-VYIHTIDNVLIEVSPQ   79 (202)
T ss_dssp             EEEEEES--BEEGSCGCSB--HHHHCGGHTTTTTGGGCS-HHHHHHHHHHHHTSHHHHTT-EE-EEEEETTSEEEEE-TT
T ss_pred             CCccCCeeeEecCCCCcCccchHHHHHHHHHcCCChhhcCcchHHHHHHHHhcChHHhCCcEE-EEEEecCCEEEEECCC
Confidence            799999999999999999999999999999999999999999999999999999999999999 9999999999999999


Q ss_pred             CCCCcchhHHHHHHHHHHHhCccccCCCccceEEEEecccccccCCCCeEEEEeeccceeeccc
Q 026378          171 VRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGCLLARQVSHIVQ  234 (239)
Q Consensus       171 ~RIPRty~RF~GLM~qLL~k~~I~~~~~~e~LLkviknplt~~LP~~~~kIglS~~g~~v~~~~  234 (239)
                      +||||||+||+|||+|||++|+|++++++++||+|++|||++|||.|+++||||.+|+.+++.+
T Consensus        80 ~RiPR~y~rF~gLm~qLL~~~~I~~~~~~~~Llkv~~~~l~~~l~~~~~~i~ls~~g~~~~~~~  143 (202)
T PF03587_consen   80 TRIPRNYNRFVGLMEQLLKKGKIPAEESGEPLLKVIKNPLTDLLPPGSRKILLSEKGEKVDPKE  143 (202)
T ss_dssp             ----SSHHHHHHHHHHHHHHSEEEETTSTCEEEEEECS-HHHHCCCTCEEEEEETTSCEE-HHH
T ss_pred             CcCCcCHHHHHHHHHHHHhcCcccCCCCCCeeEEEEeCCHHHhcCCCCeEEEEcCCCCcCCHHH
Confidence            9999999999999999999999999988999999999999999999999999999999997653

They play a role in the methylation reaction of pre-rRNA processing. The structure of EMG1 has revealed that it is a novel member of the superfamily of alpha/beta knot fold methyltransferases [, ].; GO: 0008168 methyltransferase activity; PDB: 3BBE_B 3BBD_B 3BBH_B 2V3K_A 3OII_B 3OIJ_B 3OIN_A 2V3J_A 3O7B_A.

>PRK04171 ribosome biogenesis protein; Provisional

Probab=100.00  E-value=6e-55  Score=384.68  Aligned_cols=151  Identities=30%  Similarity=0.443  Sum_probs=134.7

Q ss_pred             chhhhhhhhhcCCCCCCCCCCCCCCcEEEEecCCchheeecCC--eeeeecchhhHHHHHhCCCCCCCCCCcHHHHHHHH
Q 026378           63 EEKDVVVHEMEGIPIAPSDQNTKRPGVIFVLEKASLEVAKVGK--SYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLS  140 (239)
Q Consensus        63 ~~~~~~~~~~~~~p~~~~~~~~~~~~livVLe~A~Le~~k~gk--~~~LLn~d~H~~~m~kl~~~~~~~RPDIvHq~LL~  140 (239)
                      ++++.+|.+|.+.|...++..                  |+||  +++|||+++|+++|+++++++++|||||||||||+
T Consensus         9 s~LElvP~ei~~hp~v~~~a~------------------rr~K~p~~~LLd~~~H~~~m~kl~~~~~rgRPDIvHq~LL~   70 (222)
T PRK04171          9 SALELVPREIWNHPAVVKNAR------------------RRGKKPEEMLLDSSLHYHAMKKLEDKEKRGRPDIVHISLLV   70 (222)
T ss_pred             cccccCCHHHhcCcHHHhhHH------------------HcCCChhhhccChHHHHHHHHhCccchhccCCCHHHHHHHH
Confidence            455666666666665554321                  2355  45699999999999999999999999999999999


Q ss_pred             hhcchhhhcCCccEEEEEecCCeEEEEcCCCCCCcchhHHHHHHHHHHHhCccccCCCccceEEEEecccccccCCC--C
Q 026378          141 ILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVN--S  218 (239)
Q Consensus       141 LLDSPLNKaG~Lq~VYIhT~~g~lIeVsP~~RIPRty~RF~GLM~qLL~k~~I~~~~~~e~LLkviknplt~~LP~~--~  218 (239)
                      +|||||||+|+|+ |||||.+|+||+|||++||||||+||+|||+|||++++|+++  +++||++++|||++|||.+  +
T Consensus        71 lldSpLNk~G~L~-VYIhT~~~~lI~V~P~~RiPR~y~rF~gLM~qLL~k~~I~~~--~~~Llkv~k~~l~~~l~~~~~~  147 (222)
T PRK04171         71 ALDSPLNKEGKLR-VYIHTRDDKVIYVNPETRLPKNYNRFVGLMEQLLKEGRVPPN--GEPLLEIENKSLEELLEEIGPD  147 (222)
T ss_pred             HhcChhhhcCCeE-EEEEecCCEEEEECCCCcCCCCHHHHHHHHHHHHHhCccCCC--CcchheeecCcHHHhccccCCC
Confidence            9999999999999 999999999999999999999999999999999999999986  7899999999999999999  9


Q ss_pred             eEEEEeeccceeeccc
Q 026378          219 RKIGCLLARQVSHIVQ  234 (239)
Q Consensus       219 ~kIglS~~g~~v~~~~  234 (239)
                      ++||||.+|+.+++.+
T Consensus       148 ~~i~lS~~g~~~~~~~  163 (222)
T PRK04171        148 RIILLSEKGELVKPKE  163 (222)
T ss_pred             cEEEECCCCcccCHHH
Confidence            9999999999998653

>COG1756 Mra1 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2.9e-47  Score=335.74  Aligned_cols=142  Identities=42%  Similarity=0.569  Sum_probs=127.7

Q ss_pred             EEecCCchheeecC-C--eeeeecchhhHHHHHhCCCCCCCCCCcHHHHHHHHhhcchhhhcCCccEEEEEecCCeEEEE
Q 026378           91 FVLEKASLEVAKVG-K--SYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEV  167 (239)
Q Consensus        91 vVLe~A~Le~~k~g-k--~~~LLn~d~H~~~m~kl~~~~~~~RPDIvHq~LL~LLDSPLNKaG~Lq~VYIhT~~g~lIeV  167 (239)
                      |+...|+++.+|+. +  ...|||+++||.+|+++...++||||||+|||||++||||||++|+|+ |||||++|.||+|
T Consensus        19 i~~hpav~~~akrrgk~p~~~iLd~~~hh~am~~l~~~e~RgRPDI~H~~LL~~lDSplnk~~~L~-vYIHT~~~~vI~v   97 (223)
T COG1756          19 IVNHPAVLRDAKRRGKRPEKIILDSSYHHTAMKKLEDRERRGRPDIVHQCLLTLLDSPLNKEGKLR-VYIHTRNDYVIEV   97 (223)
T ss_pred             HhcCHHHHHHHHHhCCCCCcEEEecccCHHHHHHhcChhhcCCCchHHHHHHHHhhccccccccee-EEEEecCCEEEEE
Confidence            34445555565553 3  678999999999999998888999999999999999999999999999 9999999999999


Q ss_pred             cCCCCCCcchhHHHHHHHHHHHhCccccCCCccceEEEEecccccccCCCC-eEEEEeeccceeeccc
Q 026378          168 KPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNS-RKIGCLLARQVSHIVQ  234 (239)
Q Consensus       168 sP~~RIPRty~RF~GLM~qLL~k~~I~~~~~~e~LLkviknplt~~LP~~~-~kIglS~~g~~v~~~~  234 (239)
                      ||.+|+||||+||+|||+|||++++|++++ +++||+++++||++|||.++ ..|-||..|....+++
T Consensus        98 ~p~~R~Prny~RFiGLmeqLlk~~~i~~~~-~e~Ll~v~~~~l~d~l~~~~~~~ill~e~G~~~~p~~  164 (223)
T COG1756          98 NPETRLPRNYNRFIGLMEQLLKKGRIPSNG-GETLLEVEKNPLTDLLPENNKVTILLHEKGELIPPKE  164 (223)
T ss_pred             CCCccCCCCHHHHHHHHHHHHhcCCcCCCC-CcEeeeeecCcHHHhccccCceEEEEcCCCCccCHHH
Confidence            999999999999999999999999999874 89999999999999999998 6688999988877653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	239
3oii_A	253	Crystal Structure Of Saccharomyces Cerevisiae Nep1E		4e-37
2v3k_A	258	The Yeast Ribosome Synthesis Factor Emg1 Alpha Beta		3e-36
3bbe_A	205	M. Jannaschii Nep1 Length = 205		1e-10
3bbd_A	205	M. Jannaschii Nep1 Complexed With S-Adenosyl-Homocy		6e-09
3o7b_A	244	Crystal Structure Of Archaeoglobus Fulgidus Nep1 Bo		6e-07

>pdb|3OII|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nep1EMG1 BOUND TO S- Adenosylhomocysteine Length = 253

Iteration: 1
 Score =  151 bits (381), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 79/158 (50%), Positives = 108/158 (68%), Gaps = 14/158 (8%)
Query: 75  IPIAP-----SDQNTKRPGVIFVLEKASLEVAKV------GKSYQILNSDDHSNFLRRNN 123
           +P AP      D+ TKR  +I VL  ASLE  K+      G  Y +LN DDH   L++  
Sbjct: 25  VPQAPPVLTSKDKITKR--MIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKKMG 82
Query: 124 KNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGI 183
           ++ ++ RPDI HQ LL++LDS + KAG+LQ VY++T +G+L EV P VR+PRT+KRF+G+
Sbjct: 83  RDISEARPDITHQCLLTLLDSPINKAGKLQ-VYIQTSRGILIEVNPTVRIPRTFKRFSGL 141
Query: 184 MLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKI 221
           M+QLL KLSI +V   EKLL+VIKNP+T +LP   RK+
Sbjct: 142 MVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKV 179

>pdb|2V3K|A Chain A, The Yeast Ribosome Synthesis Factor Emg1 Alpha Beta Knot Fold Methyltransferase Length = 258

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 78/158 (49%), Positives = 106/158 (67%), Gaps = 14/158 (8%)
Query: 75  IPIAP-----SDQNTKRPGVIFVLEKASLEVAKV------GKSYQILNSDDHSNFLRRNN 123
           +P AP      D+ TKR   I VL  ASLE  K+      G  Y +LN DDH   L++  
Sbjct: 24  VPQAPPVLTSKDKITKR--XIVVLAXASLETHKISSNGPGGDKYVLLNCDDHQGLLKKXG 81
Query: 124 KNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGI 183
           ++ ++ RPDI HQ LL++LDS + KAG+LQ VY++T +G+L EV P VR+PRT+KRF+G+
Sbjct: 82  RDISEARPDITHQCLLTLLDSPINKAGKLQ-VYIQTSRGILIEVNPTVRIPRTFKRFSGL 140
Query: 184 MLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKI 221
            +QLL KLSI +V   EKLL+VIKNP+T +LP   RK+
Sbjct: 141 XVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKV 178

>pdb|3BBE|A Chain A, M. Jannaschii Nep1 Length = 205

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 77/144 (53%), Gaps = 19/144 (13%)
Query: 92  VLEKASLEVA------KVGKS----YQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSI 141
           +L K++LE+       K+ KS    Y IL+S+ H   + +        RPDI+H +LL+I
Sbjct: 6   ILAKSALELIPEEIKNKIRKSRVYKYDILDSNYHYKAMEKLKDKEMRGRPDIIHISLLNI 65
Query: 142 LDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREK 201
           LDS +    +L  +Y+ T    + ++ P  RLPR Y RF G+M ++L+       G+R  
Sbjct: 66  LDSPINHEKKLN-IYIHTYDDKVLKINPETRLPRNYFRFLGVMEKVLK-------GERNH 117
Query: 202 LLRVIKNPVTQYL-PVNSRKIGCL 224
           L+++ +  +   L  +N++KI  +
Sbjct: 118 LIKMEEKTLEDLLNEINAKKIAIM 141

>pdb|3BBD|A Chain A, M. Jannaschii Nep1 Complexed With S-Adenosyl-Homocysteine Length = 205

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 73/142 (51%), Gaps = 19/142 (13%)
Query: 92  VLEKASLEVA------KVGKS----YQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSI 141
           +L K++LE+       K+ KS    Y IL+S+ H     +        RPDI+H +LL+I
Sbjct: 6   ILAKSALELIPEEIKNKIRKSRVYKYDILDSNYHYKAXEKLKDKEXRGRPDIIHISLLNI 65
Query: 142 LDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREK 201
           LDS +    +L  +Y+ T    + ++ P  RLPR Y RF G+  ++L+       G+R  
Sbjct: 66  LDSPINHEKKLN-IYIHTYDDKVLKINPETRLPRNYFRFLGVXEKVLK-------GERNH 117
Query: 202 LLRVIKNPVTQYL-PVNSRKIG 222
           L++  +  +   L  +N++KI 
Sbjct: 118 LIKXEEKTLEDLLNEINAKKIA 139

>pdb|3O7B|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Nep1 Bound To S- Adenosylhomocysteine Length = 244

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 130 RPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQ 189
           RPDIVHQ LL +LDS L    R   VYV T  G +  V    RLPR Y RF G+M +L +
Sbjct: 86  RPDIVHQCLLLLLDSPL----RDFEVYVHTLNGEIIWVNRETRLPRNYNRFVGLMEKLFE 141
Query: 190 KLSITA 195
           +  ITA
Sbjct: 142 ERRITA 147

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	239
3oii_A	253	Essential for mitotic growth 1; EMG1, scnep1, spou	1e-53
3bbd_A	205	Ribosome biogenesis protein NEP1-like; methyltrans	6e-47
3o7b_A	244	Ribosome biogenesis NEP1 RNA methyltransferase; sp	4e-41
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	5e-05

>3oii_A Essential for mitotic growth 1; EMG1, scnep1, spout, ribosome biogenesis, methyltransferase, processing, ribosomal protein; HET: SAH; 1.85A {Saccharomyces cerevisiae} PDB: 3oij_A* 3oin_A* 2v3j_A 2v3k_A* Length = 253

 Score =  172 bits (437), Expect = 1e-53
 Identities = 74/156 (47%), Positives = 104/156 (66%), Gaps = 8/156 (5%)

Query: 73  EGIPIAPSDQNTKRPGVIFVLEKASLEVAKV------GKSYQILNSDDHSNFLRRNNKNP 126
           +  P+  S     +  +I VL  ASLE  K+      G  Y +LN DDH   L++  ++ 
Sbjct: 27  QAPPVLTSKDKITK-RMIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKKMGRDI 85

Query: 127 ADYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQ 186
           ++ RPDI HQ LL++LDS + KAG+LQ VY++T +G+L EV P VR+PRT+KRF+G+M+Q
Sbjct: 86  SEARPDITHQCLLTLLDSPINKAGKLQ-VYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQ 144

Query: 187 LLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIG 222
           LL KLSI +V   EKLL+VIKNP+T +LP   RK+ 
Sbjct: 145 LLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVT 180

>3bbd_A Ribosome biogenesis protein NEP1-like; methyltransferase, S-adenosyl-methionin adenosyl-homocysteine, rRNA processing; HET: MSE SAH; 2.15A {Methanocaldococcus jannaschii} SCOP: c.116.1.6 PDB: 3bbe_A 3bbh_A* Length = 205

 Score =  153 bits (388), Expect = 6e-47
 Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 11/144 (7%)

Query: 89  VIFVLEKASLEVAKVG----------KSYQILNSDDHSNFLRRNNKNPADYRPDIVHQAL 138
              +L K++LE+                Y IL+S+ H   + +        RPDI+H +L
Sbjct: 3   YNIILAKSALELIPEEIKNKIRKSRVYKYDILDSNYHYKAMEKLKDKEMRGRPDIIHISL 62

Query: 139 LSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGK 198
           L+ILDS +    +L  +Y+ T    + ++ P  RLPR Y RF G+M ++L+      +  
Sbjct: 63  LNILDSPINHEKKLN-IYIHTYDDKVLKINPETRLPRNYFRFLGVMEKVLKGERNHLIKM 121

Query: 199 REKLLRVIKNPVTQYLPVNSRKIG 222
            EK L  + N +         K G
Sbjct: 122 EEKTLEDLLNEINAKKIAIMTKTG 145

>3o7b_A Ribosome biogenesis NEP1 RNA methyltransferase; spout, rRNA processi transferase; HET: TYR SAH; 1.45A {Archaeoglobus fulgidus} Length = 244

 Score =  140 bits (353), Expect = 4e-41
 Identities = 44/153 (28%), Positives = 61/153 (39%), Gaps = 24/153 (15%)

Query: 88  GVIFVLEKASLEVA---------------KVGK--SYQILNSDDHSNFLRRNNKNPADYR 130
           G  FV  +ASLE+                + GK     +L+   H   ++         R
Sbjct: 27  GSAFVFLEASLELIPQKIRGHPAVRADAIRRGKRPEKILLDDSKHHTAMKSLEFREKRGR 86

Query: 131 PDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQK 190
           PDIVHQ LL +LDS L        VYV T  G +  V    RLPR Y RF G+M +L ++
Sbjct: 87  PDIVHQCLLLLLDSPLRDF----EVYVHTLNGEIIWVNRETRLPRNYNRFVGLMEKLFEE 142

Query: 191 LSITAVGKREKLLRVIKNPVTQYLPVNSRKIGC 223
             ITA      L+      +   +      +  
Sbjct: 143 RRITAGD--TTLIEFKDVGLRDIVR-GRDVLLF 172

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 8e-06
 Identities = 39/248 (15%), Positives = 81/248 (32%), Gaps = 57/248 (22%)

Query: 16  RDEKYDREEEEEEKEEVEEEELNDSGKRAKL----EKTSQNDNKKGEEDGQEEKDVVVHE 71
           + E+           E  +   ND+   AK      +      +   E  +  K+V++  
Sbjct: 99  KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-RPAKNVLIDG 157

Query: 72  MEGIPIAPSDQNTKRPGVIFVLEKASLEVAKVGKSYQILNSDDHSNF-LRRNNKNPADYR 130
           + G             G      K  +    V  SY++    D   F L   N N  +  
Sbjct: 158 VLGS------------G------KTWV-ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 131 PDIVHQALLSILDSRLT------KAGRLQAVYVRTDKGVLFEVKPH---------VRLPR 175
            +++ Q LL  +D   T         +L+   ++ +   L + KP+         V+  +
Sbjct: 199 LEML-QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257

Query: 176 TYKRFAGIMLQLLQKLSITAVGKREK-LLRVIKNPVTQYLPVNSRKIGC-------LLAR 227
            +  F  +  ++L    +T    R K +   +    T ++ ++   +         LL +
Sbjct: 258 AWNAF-NLSCKIL----LTT---RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

Query: 228 QVSHIVQK 235
            +    Q 
Sbjct: 310 YLDCRPQD 317

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 42.1 bits (98), Expect = 5e-05
 Identities = 14/67 (20%), Positives = 35/67 (52%), Gaps = 5/67 (7%)

Query: 2   VRAFKMKGQKRKKKRDEKYDREEEEEEKEEVEEEELNDSGKR--AKLEKTSQNDNKKGEE 59
           +R ++ + +KR ++ D     +  E+E  E  +++L +  +R   ++EK   N N+  ++
Sbjct: 87  IRKWREEQRKRLQELDAA--SKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN-NRIADK 143

Query: 60  DGQEEKD 66
              ++ D
Sbjct: 144 AFYQQPD 150

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	239
3oii_A	253	Essential for mitotic growth 1; EMG1, scnep1, spou	100.0
3bbd_A	205	Ribosome biogenesis protein NEP1-like; methyltrans	100.0
3o7b_A	244	Ribosome biogenesis NEP1 RNA methyltransferase; sp	100.0
2qmm_A	197	UPF0217 protein AF_1056; alpha/beta knot, SAM, str	99.65
3aia_A	211	UPF0217 protein MJ1640; DUF358, rRNA methyltransfe	99.58

>3oii_A Essential for mitotic growth 1; EMG1, scnep1, spout, ribosome biogenesis, methyltransferase, processing, ribosomal protein; HET: SAH; 1.85A {Saccharomyces cerevisiae} PDB: 3oij_A* 3oin_A* 2v3j_A 2v3k_A*

Probab=100.00  E-value=1.1e-61  Score=433.04  Aligned_cols=152  Identities=48%  Similarity=0.817  Sum_probs=143.1

Q ss_pred             CCCCCCcEEEEecCCchheeec------CCeeeeecchhhHHHHHhCCCCCCCCCCcHHHHHHHHhhcchhhhcCCccEE
Q 026378           82 QNTKRPGVIFVLEKASLEVAKV------GKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAV  155 (239)
Q Consensus        82 ~~~~~~~livVLe~A~Le~~k~------gk~~~LLn~d~H~~~m~kl~~~~~~~RPDIvHq~LL~LLDSPLNKaG~Lq~V  155 (239)
                      .+++++|+||||++|+||+++.      +++|+|||+++|+++|+++++++++|||||||||||+|||||||++|+|+ |
T Consensus        35 ~~~~~~rlivVL~~a~LE~v~~~~~~r~~~~~~LLd~~~H~~~m~k~~~~~~~~RPDIvHq~LL~lldSpLNk~G~L~-V  113 (253)
T 3oii_A           35 KDKITKRMIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQ-V  113 (253)
T ss_dssp             TCCSSCCEEEEEEEECCCEECC---------CEECCTTTCHHHHHHTTCCGGGCCHHHHHHHHHHHHTSHHHHTTCEE-E
T ss_pred             cccCCceEEEEeCCCccceeeccccccCCCCeEeechHHHHHHHHHcCCchhhcCCCHHHHHHHHHhcChhhhcCceE-E
Confidence            3357999999999999999995      57899999999999999999999999999999999999999999999999 9


Q ss_pred             EEEecCCeEEEEcCCCCCCcchhHHHHHHHHHHHhCccccCCCccceEEEEecccccccCCCCeEEEEeeccceeeccc
Q 026378          156 YVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGCLLARQVSHIVQ  234 (239)
Q Consensus       156 YIhT~~g~lIeVsP~~RIPRty~RF~GLM~qLL~k~~I~~~~~~e~LLkviknplt~~LP~~~~kIglS~~g~~v~~~~  234 (239)
                      ||||.+|+||+|||++||||||+||+|||+|||++++|++.+++++||+|++|||++|||+||++|+||++|+.|++.+
T Consensus       114 YIhT~~~~lIeV~P~~RiPRty~rF~GLM~qLL~k~~I~~~~~~~~LLkvikn~l~d~Lp~~~~kI~ls~~g~~v~~~~  192 (253)
T 3oii_A          114 YIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAPVIRVQD  192 (253)
T ss_dssp             EEEETTSCEEEECTTCCCCSSHHHHHHHHHHHHHHSEEEETTEEEEEEEEECSCGGGTSCSSEEEEEECTTSCBCCHHH
T ss_pred             EEEecCCEEEEECCCCCCCCCHHHHHHHHHHHHhcCcccCCCCCCeeEEEEcCCHHHhCCCCCeEEEEccCCCccCHHH
Confidence            9999999999999999999999999999999999999999878899999999999999999999999999999887643

>3bbd_A Ribosome biogenesis protein NEP1-like; methyltransferase, S-adenosyl-methionin adenosyl-homocysteine, rRNA processing; HET: MSE SAH; 2.15A {Methanocaldococcus jannaschii} SCOP: c.116.1.6 PDB: 3bbe_A 3bbh_A*

Probab=100.00  E-value=2.9e-58  Score=400.20  Aligned_cols=138  Identities=27%  Similarity=0.480  Sum_probs=134.0

Q ss_pred             EEEEecCCchhee--------ecCC--eeeeecchhhHHHHHhCCCCCCCCCCcHHHHHHHHhhcchhhhcCCccEEEEE
Q 026378           89 VIFVLEKASLEVA--------KVGK--SYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVR  158 (239)
Q Consensus        89 livVLe~A~Le~~--------k~gk--~~~LLn~d~H~~~m~kl~~~~~~~RPDIvHq~LL~LLDSPLNKaG~Lq~VYIh  158 (239)
                      ++|||++|+||++        |+||  +|+|||+++|+++|+++++++++|||||||||||+||||||||+|+|+ ||||
T Consensus         3 l~vvL~~a~LE~vP~ei~~a~k~gk~p~~~LLd~~~H~~~m~k~~~~~~~~RPDIvHq~LL~llDSpLNk~G~L~-VYIh   81 (205)
T 3bbd_A            3 YNIILAKSALELIPEEIKNKIRKSRVYKYDILDSNYHYKAMEKLKDKEMRGRPDIIHISLLNILDSPINHEKKLN-IYIH   81 (205)
T ss_dssp             EEEEEEEESCCBCCGGGGGGCCCBTTBCCSBCCHHHHTTTTTTCTTGGGSSCHHHHHHHHHHHHTSHHHHTTCEE-EEEE
T ss_pred             EEEEECCCccccChhhhhhhHhcCCCCcceecchHHHHHHHHhcccchhccCCcHHHHHHHHHhcChHHHCCCeE-EEEE
Confidence            7899999999999        9999  999999999999999999999999999999999999999999999999 9999


Q ss_pred             ecCCeEEEEcCCCCCCcchhHHHHHHHHHHHhCccccCCCccceEEEEecccccccCCC--CeEEEEeeccceeeccc
Q 026378          159 TDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVN--SRKIGCLLARQVSHIVQ  234 (239)
Q Consensus       159 T~~g~lIeVsP~~RIPRty~RF~GLM~qLL~k~~I~~~~~~e~LLkviknplt~~LP~~--~~kIglS~~g~~v~~~~  234 (239)
                      |.+|+||+|||++||||||+||+|||+|||++++       ++||+|++|||++|||+|  +++||||++|+.+++.+
T Consensus        82 T~~~~lI~V~P~~RiPRty~rF~gLM~qLL~~~~-------~~Llkvik~~l~~~lp~~~~~~~i~ls~~g~~v~~~~  152 (205)
T 3bbd_A           82 TYDDKVLKINPETRLPRNYFRFLGVMEKVLKGER-------NHLIKMEEKTLEDLLNEINAKKIAIMTKTGKLTHPKL  152 (205)
T ss_dssp             ETTSEEEEECTTCCCCSSHHHHHHHHHHHHTTCC-------CSSEEEEECCHHHHHHHTTCCEEEEEEEEEEECCGGG
T ss_pred             ecCCEEEEECCCCCCCCCHHHHHHHHHHHHHhCc-------hhheEEEcCCHHHhcCCCCCceEEEEcCCCcccCHHH
Confidence            9999999999999999999999999999999997       699999999999999999  99999999999887654

>3o7b_A Ribosome biogenesis NEP1 RNA methyltransferase; spout, rRNA processi transferase; HET: TYR SAH; 1.45A {Archaeoglobus fulgidus}

Probab=100.00  E-value=1.4e-55  Score=392.03  Aligned_cols=146  Identities=30%  Similarity=0.395  Sum_probs=134.5

Q ss_pred             CCCCCCcEEEEecCCchheee---------------cCC--eeeeecchhhHHHHHhCCCCCCCCCCcHHHHHHHHhhcc
Q 026378           82 QNTKRPGVIFVLEKASLEVAK---------------VGK--SYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDS  144 (239)
Q Consensus        82 ~~~~~~~livVLe~A~Le~~k---------------~gk--~~~LLn~d~H~~~m~kl~~~~~~~RPDIvHq~LL~LLDS  144 (239)
                      ..-+++|++|||.+|+||++.               +||  +|+|||+++|+++|++++++++||||||||||||+||||
T Consensus        21 ~~~~~~~l~vVL~ea~LElvp~ei~~hp~v~~~a~rrgk~p~~~LLd~~~H~~amkkl~~~~krgRPDIvHq~LL~llDS  100 (244)
T 3o7b_A           21 LYFQGMGSAFVFLEASLELIPQKIRGHPAVRADAIRRGKRPEKILLDDSKHHTAMKSLEFREKRGRPDIVHQCLLLLLDS  100 (244)
T ss_dssp             -----CCEEEEEEEESCCBCCGGGTTSHHHHHHHHHHTSCGGGSBCCHHHHGGGCTTCTTGGGCSCHHHHHHHHHHHHTC
T ss_pred             ceecCcEEEEEECCCcccccchhhccCcchhhhhhhcCCCccccccchHHHHHHHHHCCChhhccCccHHHHHHHHHhhC
Confidence            335789999999999999995               456  499999999999999999999999999999999999999


Q ss_pred             hhhhcCCccEEEEEecCCeEEEEcCCCCCCcchhHHHHHHHHHHHhCccccCCCccceEEEEecccccccCCCCeEEEEe
Q 026378          145 RLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGCL  224 (239)
Q Consensus       145 PLNKaG~Lq~VYIhT~~g~lIeVsP~~RIPRty~RF~GLM~qLL~k~~I~~~~~~e~LLkviknplt~~LP~~~~kIglS  224 (239)
                      ||||   |+ |||||.+|+||+|||.+||||||+||+|||+|||++++|++  ++++||+|++|||++|||++ ++|+||
T Consensus       101 pLNk---L~-VYIHT~~~~lI~V~P~~RiPRty~RF~GLM~qLL~k~~I~~--~~~~LLkvik~~l~~~lp~~-~~I~lS  173 (244)
T 3o7b_A          101 PLRD---FE-VYVHTLNGEIIWVNRETRLPRNYNRFVGLMEKLFEERRITA--GDTTLIEFKDVGLRDIVRGR-DVLLFR  173 (244)
T ss_dssp             SCCS---EE-EEEEETTSCEEEECTTCCCCSSHHHHHHHHHHHHHHSEEEE--TTEEEEEEESSCHHHHTTTS-EEEEEE
T ss_pred             hhhh---eE-EEEEecCCEEEEECCCCCCCCCHHHHHHHHHHHHhhCcCCC--CCCeeEEEEcCCHHHhcCCC-cEEEEc
Confidence            9998   99 99999999999999999999999999999999999999999  46899999999999999999 999999


Q ss_pred             eccceeeccc
Q 026378          225 LARQVSHIVQ  234 (239)
Q Consensus       225 ~~g~~v~~~~  234 (239)
                      ++|+.|++.+
T Consensus       174 ~~G~~v~~~~  183 (244)
T 3o7b_A          174 EKGGRFEFSE  183 (244)
T ss_dssp             EEEECCCHHH
T ss_pred             cCCCcCCHHH
Confidence            9999887643

>2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7

Probab=99.65  E-value=2.2e-17  Score=142.64  Aligned_cols=97  Identities=12%  Similarity=-0.025  Sum_probs=87.9

Q ss_pred             CCCCcHHHHHHHHhhcchhhhcCCccEEEEEecC------------CeEEEEcCCCCCCcchhHHHHHHHHHHHh--Ccc
Q 026378          128 DYRPDIVHQALLSILDSRLTKAGRLQAVYVRTDK------------GVLFEVKPHVRLPRTYKRFAGIMLQLLQK--LSI  193 (239)
Q Consensus       128 ~~RPDIvHq~LL~LLDSPLNKaG~Lq~VYIhT~~------------g~lIeVsP~~RIPRty~RF~GLM~qLL~k--~~I  193 (239)
                      +|||||+|+||+++|.|++|..|.+. |||||.+            +.|++|+|+.|      +|.|||+|+|.+  +++
T Consensus        27 ~GR~DIl~r~l~~al~~s~~~R~dv~-vyl~l~~~p~p~~ti~f~g~~v~~v~PdeR------~~~gli~kaL~~~~~~~   99 (197)
T 2qmm_A           27 AGRMDVLCRCTSQALFISHGIRRDVE-VYLLLLGPPSPPKSILIKGDEVRRMSPDER------NVAGHIKKALAVECGKS   99 (197)
T ss_dssp             TTSHHHHHHHHHHHHEETTEECTTEE-EEEEECCSSSCCEEEEEETTTCCSCCSSHH------HHHHHHHHHHHSCCCSS
T ss_pred             CCCceeHHHHHHHHHhhhhcccCCeE-EEEEECCCCCCCeeEEecCCeEEEcChhHH------HHHHHHHHHHHhccCcc
Confidence            99999999999999999999999999 9999999            99999999999      999999999999  888


Q ss_pred             ccCCCccceEEEEecccccccCC---CCeEEEEeeccceeecc
Q 026378          194 TAVGKREKLLRVIKNPVTQYLPV---NSRKIGCLLARQVSHIV  233 (239)
Q Consensus       194 ~~~~~~e~LLkviknplt~~LP~---~~~kIglS~~g~~v~~~  233 (239)
                      ++.  ++++++|.+.++++++-.   ....|-|+.+|+.+...
T Consensus       100 ~~~--~~pgi~v~~~sle~ll~e~~~~~~v~~L~E~G~~i~~~  140 (197)
T 2qmm_A          100 WKK--VHSGVYVSRKGLEELIEELSEKYSIIYLKEDGVDISNA  140 (197)
T ss_dssp             CEE--EETTEEEECCCHHHHHHHHHHHSEEEEEEEEEEEGGGS
T ss_pred             cCC--CCCCEEEECCCHHHHHHHhhcCCcEEEEcCCCCCCchh
Confidence            764  479999999999999943   14589999999876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	239
d2v3ka1	227	c.116.1.6 (A:25-251) Essential for mitotic growth	2e-54
d3bbda1	204	c.116.1.6 (A:2-205) Ribosome biogenesis protein NE	6e-46

>d2v3ka1 c.116.1.6 (A:25-251) Essential for mitotic growth 1, EMG1 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 227

class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: EMG1/NEP1-like
domain: Essential for mitotic growth 1, EMG1
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score =  172 bits (437), Expect = 2e-54
 Identities = 76/153 (49%), Positives = 105/153 (68%), Gaps = 9/153 (5%)

Query: 76  PIAPSDQNTKRPGVIFVLEKASLEVAKV------GKSYQILNSDDHSNFLRRNNKNPADY 129
            +   D+ TKR  +I VL  ASLE  K+      G  Y +LN DDH   L++  ++ ++ 
Sbjct: 6   VLTSKDKITKR--MIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKKMGRDISEA 63

Query: 130 RPDIVHQALLSILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQ 189
           RPDI HQ LL++LDS + KAG+LQ VY++T +G+L EV P VR+PRT+KRF+G+M+QLL 
Sbjct: 64  RPDITHQCLLTLLDSPINKAGKLQ-VYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLH 122

Query: 190 KLSITAVGKREKLLRVIKNPVTQYLPVNSRKIG 222
           KLSI +V   EKLL+VIKNP+T +LP   RK+ 
Sbjct: 123 KLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVT 155

>d3bbda1 c.116.1.6 (A:2-205) Ribosome biogenesis protein NEP1 {Methanococcus jannaschii [TaxId: 2190]} Length = 204

class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: EMG1/NEP1-like
domain: Ribosome biogenesis protein NEP1
species: Methanococcus jannaschii [TaxId: 2190]

 Score =  149 bits (379), Expect = 6e-46
 Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 11/142 (7%)

Query: 91  FVLEKASLEVA--------KVGK--SYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLS 140
            +L K++LE+         +  +   Y IL+S+ H   + +        RPDI+H +LL+
Sbjct: 4   IILAKSALELIPEEIKNKIRKSRVYKYDILDSNYHYKAMEKLKDKEMRGRPDIIHISLLN 63

Query: 141 ILDSRLTKAGRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKRE 200
           ILDS +    +L  +Y+ T    + ++ P  RLPR Y RF G+M ++L+      +   E
Sbjct: 64  ILDSPINHEKKLN-IYIHTYDDKVLKINPETRLPRNYFRFLGVMEKVLKGERNHLIKMEE 122

Query: 201 KLLRVIKNPVTQYLPVNSRKIG 222
           K L  + N +         K G
Sbjct: 123 KTLEDLLNEINAKKIAIMTKTG 144

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	239
d2v3ka1	227	Essential for mitotic growth 1, EMG1 {Saccharomyce	100.0
d3bbda1	204	Ribosome biogenesis protein NEP1 {Methanococcus ja	100.0

>d2v3ka1 c.116.1.6 (A:25-251) Essential for mitotic growth 1, EMG1 {Saccharomyces cerevisiae [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: EMG1/NEP1-like
domain: Essential for mitotic growth 1, EMG1
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=100.00  E-value=1.3e-61  Score=422.51  Aligned_cols=157  Identities=47%  Similarity=0.799  Sum_probs=145.5

Q ss_pred             CCCCCCCCCCCCcEEEEecCCchheeec------CCeeeeecchhhHHHHHhCCCCCCCCCCcHHHHHHHHhhcchhhhc
Q 026378           76 PIAPSDQNTKRPGVIFVLEKASLEVAKV------GKSYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKA  149 (239)
Q Consensus        76 p~~~~~~~~~~~~livVLe~A~Le~~k~------gk~~~LLn~d~H~~~m~kl~~~~~~~RPDIvHq~LL~LLDSPLNKa  149 (239)
                      |......+.+++||||||++|+||++|+      |++|+|||+|+|+++|+++++++++|||||||||||+|||||||++
T Consensus         4 ~~~~~~~~~~~~~l~~vL~~a~Le~~k~~~~~~~~~~~~LL~~~~H~~~m~~~~~~~~~~RPDIvH~~LL~l~dSpLnk~   83 (227)
T d2v3ka1           4 PPVLTSKDKITKRMIVVLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKA   83 (227)
T ss_dssp             CCCCCTTCSSSCCEEEEEEEECCCEECC---------CEECCTTTCHHHHHHTTCCGGGCCHHHHHHHHHHHHTSHHHHT
T ss_pred             CCCCCccCCCCceEEEEECCCcceeeeeccccCCCCccEecccHHHHHHHHHcCCcccccCcCHHHHHHHHHhcChhhhc
Confidence            3333445567899999999999999998      4579999999999999999999999999999999999999999999


Q ss_pred             CCccEEEEEecCCeEEEEcCCCCCCcchhHHHHHHHHHHHhCccccCCCccceEEEEecccccccCCCCeEEEEeeccce
Q 026378          150 GRLQAVYVRTDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYLPVNSRKIGCLLARQV  229 (239)
Q Consensus       150 G~Lq~VYIhT~~g~lIeVsP~~RIPRty~RF~GLM~qLL~k~~I~~~~~~e~LLkviknplt~~LP~~~~kIglS~~g~~  229 (239)
                      |+|+ |||||.+|+||+|||.+||||||+||+|||+|||++++|++++++++||++++|||++|+|+|+++|+||.+|+.
T Consensus        84 g~L~-VyihT~~~~lI~V~p~~RvPrty~rF~gLm~qLl~~~~i~~~~~~~~Ll~vikn~Itd~lp~~~k~I~LS~~G~~  162 (227)
T d2v3ka1          84 GKLQ-VYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAPV  162 (227)
T ss_dssp             TCEE-EEEEETTSCEEEECTTCCCCSSHHHHHHHHHHHHHHSEEECTTTCSEEEEEECSCGGGTSCSSEEEEEECTTSCB
T ss_pred             CceE-EEEEecCCEEEEECCCCcCCCCHHHHHHHHHHHHHhCccccCCCccceeeeeccccccccCCCCeEEEECCCCCc
Confidence            9999 999999999999999999999999999999999999999998889999999999999999999999999999998


Q ss_pred             eecc
Q 026378          230 SHIV  233 (239)
Q Consensus       230 v~~~  233 (239)
                      +.+.
T Consensus       163 ~~~~  166 (227)
T d2v3ka1         163 IRVQ  166 (227)
T ss_dssp             CCHH
T ss_pred             cCHH
Confidence            7643

>d3bbda1 c.116.1.6 (A:2-205) Ribosome biogenesis protein NEP1 {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: EMG1/NEP1-like
domain: Ribosome biogenesis protein NEP1
species: Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=4.5e-52  Score=358.72  Aligned_cols=137  Identities=28%  Similarity=0.520  Sum_probs=128.1

Q ss_pred             EEEEecCCchhee--------ecCC--eeeeecchhhHHHHHhCCCCCCCCCCcHHHHHHHHhhcchhhhcCCccEEEEE
Q 026378           89 VIFVLEKASLEVA--------KVGK--SYQILNSDDHSNFLRRNNKNPADYRPDIVHQALLSILDSRLTKAGRLQAVYVR  158 (239)
Q Consensus        89 livVLe~A~Le~~--------k~gk--~~~LLn~d~H~~~m~kl~~~~~~~RPDIvHq~LL~LLDSPLNKaG~Lq~VYIh  158 (239)
                      +.|||++|+||++        ++||  +|+|||+|+|+++|+++++++++|||||||||||+||||||||+|+|| ||||
T Consensus         2 ~~~VL~~a~LElvp~~~~~~~~~~k~~~~~LLd~~~H~~~mkk~~~~~~~gRPDIvHq~LL~lldSpLNk~g~L~-VYIh   80 (204)
T d3bbda1           2 YNIILAKSALELIPEEIKNKIRKSRVYKYDILDSNYHYKAMEKLKDKEMRGRPDIIHISLLNILDSPINHEKKLN-IYIH   80 (204)
T ss_dssp             EEEEEEEESCCBCCGGGGGGCCCBTTBCCSBCCHHHHTTTTTTCTTGGGSSCHHHHHHHHHHHHTSHHHHTTCEE-EEEE
T ss_pred             eEEEEeCCcccccchhhhcCcccCCCccccccchHHHHHHHHhCcCcccccCCCHHHHHHHHHhcChhhhcCCeE-EEEE
Confidence            5699999999998        4455  699999999999999999999999999999999999999999999999 9999


Q ss_pred             ecCCeEEEEcCCCCCCcchhHHHHHHHHHHHhCccccCCCccceEEEEeccccccc-CCCCeEEEEeeccceeecc
Q 026378          159 TDKGVLFEVKPHVRLPRTYKRFAGIMLQLLQKLSITAVGKREKLLRVIKNPVTQYL-PVNSRKIGCLLARQVSHIV  233 (239)
Q Consensus       159 T~~g~lIeVsP~~RIPRty~RF~GLM~qLL~k~~I~~~~~~e~LLkviknplt~~L-P~~~~kIglS~~g~~v~~~  233 (239)
                      |.+|+||+|||.+||||||+||+|||+|||+++++       +|+++.++++++++ |.|+++||+|+.|..+..+
T Consensus        81 T~~~~lI~V~P~~RvPRty~rF~gLM~qLL~~~~~-------~ll~~~~~~l~~l~~~~~~~~i~ls~~~~~~~~~  149 (204)
T d3bbda1          81 TYDDKVLKINPETRLPRNYFRFLGVMEKVLKGERN-------HLIKMEEKTLEDLLNEINAKKIAIMTKTGKLTHP  149 (204)
T ss_dssp             ETTSEEEEECTTCCCCSSHHHHHHHHHHHHTTCCC-------SSEEEEECCHHHHHHHTTCCEEEEEEEEEEECCG
T ss_pred             ccCCEEEEECCCCcCCCCHHHHHHHHHHHhhcCCc-------ceEeccCCcHHHHhCccCCeEEEEEccCCcccCH
Confidence            99999999999999999999999999999987554       58999999999999 9999999999999887654