Citrus Sinensis ID: 026382

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MTDENQVDVKDEVAELAPFDPTKKKKKKKVVIQDPSDDSVDKLAEKTETLSVSEGLESTFTGLKKKKKKPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVSKYFLKSSFVLNIYKSVVWLLLL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccEEEcccccEEEEcccEEEEEccHHHHHHHcccHHHHHHHHHHHHcccEEEcccccEEEEEEccHHHHHHHHHHHHHHcccccccccccccccccEEcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHcccccccccccccEEEEEccccccHHHHHHHcccccccccccHHHHcHHHccccccHccccHHHHcccHHHHcHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccHHccccccEEccccEEEEEccccEEEHcHHHHHHHHcccHHHHHHHHHHHHccccccccccEEEEEccccHHHHHHHHHHHHHHHHEccEEEEEEEEcHHEHHHc
Coil and Loop (DISEMBL)
mtdenqvdvkdevaelapfdptkkkkkkkvviqdpsddsvDKLAEKTETLSVSEGLESTFtglkkkkkkpvessllndeigdagddldghvgeddeadgsggprqrypwegsdrdYEYEELLGRVFNILRennpelagdrrrtvmrppqvlregtkkTVFVNFMDLCKTMHRQPDHVMTFLLAElgtsgsldgqqrlvvkgrfapknfEGILRRYVSKYFLKSSFVLNIYKSVVWLLLL
Flexible Loop (DISEMBL)
mtdenqvdvkdevaelapfdptkkkkkkkvviqdpsddsvdklaektetlsvseglestftglkkkkkkpvessllndeigdagddldghvgeddeadgsggprqrypwegsDRDYEYEELLGRVFNILRennpelagdrrrtvmrppqvlregtkktVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKgrfapknfeGILRRYVSKyflkssfvlniyKSVVWLLLL
Low Complexity Region (SEG)
MTDENQVDVKDEVAELAPFDPTkkkkkkkVVIQDPSDDSVDKLAEKTETLSVSEGLESTFTGLkkkkkkPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVSKYFLKSSFVLNIYKSVVWLLLL
Disordered region (IsUnstruct)
******************************************************************************************************************DYEYEELLGRVFNILRE*******************LREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVSKYFLKSSFVLNIYKSVVWLLL*
Disordered Region (DISOPRED)
***************LAPF*******************************************************************************************GSDRDYEYEELLGRVFNILRE************VMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVSKYFLKSSFVLNIYKSVVWLLLL
Disordered Region (DISEMBL)
********VKDEVAELAPFDP********************KLAEKTETLSVSEGLESTF*************SLLNDEIGDAGDDLDGHVG************QRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVSKYFLKSSFVLNIYKSVVWLLLL
Disordered Region (DISPRO)
*******DVKDEVAELAPFDPTKKKKKKKVVIQDPSDDSVDKLA*******************************************************************SDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVSKYFLKSSFVLNIYKSVVWLLLL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTDENQVDVKDEVAELAPFDPTKKKKKKKVVIQDPSDDSVDKLAEKTETLSVSEGLESTFTGLKKKKKKPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVSKYFLKSSFVLNIYKSVVWLLLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	239	2.2.26 [Sep-21-2011]
P55871	271	Eukaryotic translation in	N/A	no	0.924	0.815	0.779	1e-89
O24473	270	Eukaryotic translation in	N/A	no	0.916	0.811	0.748	2e-83
Q41969	268	Eukaryotic translation in	yes	no	0.920	0.820	0.729	3e-82
Q99L45	331	Eukaryotic translation in	yes	no	0.531	0.383	0.593	1e-41
Q5R4T9	333	Eukaryotic translation in	yes	no	0.510	0.366	0.620	1e-41
P20042	333	Eukaryotic translation in	yes	no	0.510	0.366	0.620	1e-41
P41035	333	Eukaryotic translation in	yes	no	0.510	0.366	0.620	1e-41
Q5E9D0	333	Eukaryotic translation in	yes	no	0.510	0.366	0.620	2e-41
P41375	312	Eukaryotic translation in	yes	no	0.573	0.439	0.544	2e-39
Q54T27	317	Eukaryotic translation in	yes	no	0.510	0.384	0.495	3e-35

>sp|P55871|IF2B_MALDO Eukaryotic translation initiation factor 2 subunit beta OS=Malus domestica PE=2 SV=2

 Score =  329 bits (843), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 173/222 (77%), Positives = 192/222 (86%), Gaps = 1/222 (0%)

Query: 1   MTDENQVDVKDEV-AELAPFDPTKKKKKKKVVIQDPSDDSVDKLAEKTETLSVSEGLEST 59
           M D+NQ +VKDEV A++APFDPTKKKKKK+VVIQD +DDSV KLAEK E  + SEG EST
Sbjct: 1   MADDNQNEVKDEVVADIAPFDPTKKKKKKEVVIQDTTDDSVGKLAEKAEACTASEGQEST 60

Query: 60  FTGLKKKKKKPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYE 119
           F GLKKKKKKP+E+S+LN+E GDA +DL+   GED+E +G       YPWEGSDRDY YE
Sbjct: 61  FAGLKKKKKKPIETSILNEESGDAVEDLNERTGEDEEGEGIVLETPSYPWEGSDRDYTYE 120

Query: 120 ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMT 179
           ELL RVF ILRENNP+LAGDRRRTVMRPPQVLREGTKK VFVNFMDLCKTMHRQPDHVM 
Sbjct: 121 ELLDRVFTILRENNPDLAGDRRRTVMRPPQVLREGTKKAVFVNFMDLCKTMHRQPDHVMA 180

Query: 180 FLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVSKYFL 221
           FLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYV++Y +
Sbjct: 181 FLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVI 222

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. This complex binds to a 40S ribosomal subunit, followed by mRNA binding to form a 43S preinitiation complex. Junction of the 60S ribosomal subunit to form the 80S initiation complex is preceded by hydrolysis of the GTP bound to eIF-2 and release of an eIF-2-GDP binary complex. In order for eIF-2 to recycle and catalyze another round of initiation, the GDP bound to eIF-2 must exchange with GTP by way of a reaction catalyzed by eIF-2B.
Malus domestica (taxid: 3750)

>sp|O24473|IF2B_WHEAT Eukaryotic translation initiation factor 2 subunit beta OS=Triticum aestivum PE=1 SV=1

 Score =  308 bits (789), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 167/223 (74%), Positives = 190/223 (85%), Gaps = 4/223 (1%)

Query: 1   MTDENQVDVKDEVAELAPFDPTKKKKKKKVVIQDPSDDSVDKLAEKTETLSVSEGLESTF 60
           M DE Q++ K+E  E+APFDPTKKKKKKKVVIQDP+D+ VDKLAEKTE LSV+E  E++F
Sbjct: 1   MADEEQMERKEEATEIAPFDPTKKKKKKKVVIQDPADE-VDKLAEKTEGLSVTESGEASF 59

Query: 61  TGLKKKKKKPVESSLLNDEIGDAGDDLDGHVGEDDEADGS--GGPRQRYPWEGSDRDYEY 118
            GLKKKKKK VE      E GD  D LD  VGED++ +G   GG  Q YPWEG+DRDY+Y
Sbjct: 60  VGLKKKKKKLVELDPSLVEAGDGEDTLDDQVGEDEQGEGIVLGGATQ-YPWEGTDRDYKY 118

Query: 119 EELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVM 178
           +ELLGRVFNILRENNP+LAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQP+HVM
Sbjct: 119 DELLGRVFNILRENNPDLAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPEHVM 178

Query: 179 TFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVSKYFL 221
            FLLAE+GTSGSLDGQQRLV+KGRFAPKNFE ILRRY+++Y +
Sbjct: 179 MFLLAEMGTSGSLDGQQRLVIKGRFAPKNFEAILRRYINEYVI 221

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. This complex binds to a 40S ribosomal subunit, followed by mRNA binding to form a 43S preinitiation complex. Junction of the 60S ribosomal subunit to form the 80S initiation complex is preceded by hydrolysis of the GTP bound to eIF-2 and release of an eIF-2-GDP binary complex. In order for eIF-2 to recycle and catalyze another round of initiation, the GDP bound to eIF-2 must exchange with GTP by way of a reaction catalyzed by eIF-2B.

Triticum aestivum (taxid: 4565)

>sp|Q41969|IF2B_ARATH Eukaryotic translation initiation factor 2 subunit beta OS=Arabidopsis thaliana GN=EMB1401 PE=2 SV=3

 Score =  305 bits (780), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 162/222 (72%), Positives = 190/222 (85%), Gaps = 2/222 (0%)

Query: 1   MTDENQVDVKDEVAELAPFDPTKKKKKKKVVIQDPSDDSVDK-LAEKTETLSVSEGLEST 59
           M DE   ++++E  +LAPFDP+KKKKKKKVVIQ+P +D  +    EK+++L V++GLES+
Sbjct: 1   MADEIN-EIREEQEQLAPFDPSKKKKKKKVVIQEPVEDLAESSQTEKSDSLPVNDGLESS 59

Query: 60  FTGLKKKKKKPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYE 119
           FTG+KKKKKKP ESSLLN+E  DAG+DLD    ++ E +     +QRYPWEGS+RDY Y+
Sbjct: 60  FTGMKKKKKKPTESSLLNNESVDAGEDLDEIANDEQEGEEGIVLQQRYPWEGSERDYIYD 119

Query: 120 ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMT 179
           ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVM 
Sbjct: 120 ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMQ 179

Query: 180 FLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVSKYFL 221
           +LLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRY++ Y +
Sbjct: 180 YLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYITDYVI 221

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. This complex binds to a 40S ribosomal subunit, followed by mRNA binding to form a 43S preinitiation complex. Junction of the 60S ribosomal subunit to form the 80S initiation complex is preceded by hydrolysis of the GTP bound to eIF-2 and release of an eIF-2-GDP binary complex. In order for eIF-2 to recycle and catalyze another round of initiation, the GDP bound to eIF-2 must exchange with GTP by way of a reaction catalyzed by eIF-2B.

Arabidopsis thaliana (taxid: 3702)

>sp|Q99L45|IF2B_MOUSE Eukaryotic translation initiation factor 2 subunit 2 OS=Mus musculus GN=Eif2s2 PE=1 SV=1

 Score =  169 bits (429), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 76/128 (59%), Positives = 97/128 (75%), Gaps = 1/128 (0%)

Query: 93  EDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVL 151
           ED + D       +  W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+
Sbjct: 149 EDSKKDDGISFSSQTAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVV 208

Query: 152 REGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGI 211
           R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+KGRF  K  E +
Sbjct: 209 RVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENV 268

Query: 212 LRRYVSKY 219
           LRRY+ +Y
Sbjct: 269 LRRYIKEY 276

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. This complex binds to a 40S ribosomal subunit, followed by mRNA binding to form a 43S preinitiation complex. Junction of the 60S ribosomal subunit to form the 80S initiation complex is preceded by hydrolysis of the GTP bound to eIF-2 and release of an eIF-2-GDP binary complex. In order for eIF-2 to recycle and catalyze another round of initiation, the GDP bound to eIF-2 must exchange with GTP by way of a reaction catalyzed by eIF-2B.

Mus musculus (taxid: 10090)

>sp|Q5R4T9|IF2B_PONAB Eukaryotic translation initiation factor 2 subunit 2 OS=Pongo abelii GN=EIF2S2 PE=2 SV=1

 Score =  169 bits (429), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 77/124 (62%), Positives = 96/124 (77%), Gaps = 2/124 (1%)

Query: 98  DGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGT 155
           DG     Q  P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GT
Sbjct: 155 DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGT 214

Query: 156 KKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRY 215
           KKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+KGRF  K  E +LRRY
Sbjct: 215 KKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRY 274

Query: 216 VSKY 219
           + +Y
Sbjct: 275 IKEY 278

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. This complex binds to a 40S ribosomal subunit, followed by mRNA binding to form a 43S preinitiation complex. Junction of the 60S ribosomal subunit to form the 80S initiation complex is preceded by hydrolysis of the GTP bound to eIF-2 and release of an eIF-2-GDP binary complex. In order for eIF-2 to recycle and catalyze another round of initiation, the GDP bound to eIF-2 must exchange with GTP by way of a reaction catalyzed by eIF-2B.

Pongo abelii (taxid: 9601)

>sp|P20042|IF2B_HUMAN Eukaryotic translation initiation factor 2 subunit 2 OS=Homo sapiens GN=EIF2S2 PE=1 SV=2

 Score =  169 bits (428), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 77/124 (62%), Positives = 96/124 (77%), Gaps = 2/124 (1%)

Query: 98  DGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGT 155
           DG     Q  P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GT
Sbjct: 155 DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGT 214

Query: 156 KKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRY 215
           KKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+KGRF  K  E +LRRY
Sbjct: 215 KKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRY 274

Query: 216 VSKY 219
           + +Y
Sbjct: 275 IKEY 278

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. This complex binds to a 40S ribosomal subunit, followed by mRNA binding to form a 43S preinitiation complex. Junction of the 60S ribosomal subunit to form the 80S initiation complex is preceded by hydrolysis of the GTP bound to eIF-2 and release of an eIF-2-GDP binary complex. In order for eIF-2 to recycle and catalyze another round of initiation, the GDP bound to eIF-2 must exchange with GTP by way of a reaction catalyzed by eIF-2B.

Homo sapiens (taxid: 9606)

>sp|P41035|IF2B_RABIT Eukaryotic translation initiation factor 2 subunit 2 OS=Oryctolagus cuniculus GN=EIF2S2 PE=1 SV=1

 Score =  169 bits (428), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 77/124 (62%), Positives = 96/124 (77%), Gaps = 2/124 (1%)

Query: 98  DGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGT 155
           DG     Q  P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GT
Sbjct: 155 DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGT 214

Query: 156 KKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRY 215
           KKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+KGRF  K  E +LRRY
Sbjct: 215 KKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRY 274

Query: 216 VSKY 219
           + +Y
Sbjct: 275 IKEY 278

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. This complex binds to a 40S ribosomal subunit, followed by mRNA binding to form a 43S preinitiation complex. Junction of the 60S ribosomal subunit to form the 80S initiation complex is preceded by hydrolysis of the GTP bound to eIF-2 and release of an eIF-2-GDP binary complex. In order for eIF-2 to recycle and catalyze another round of initiation, the GDP bound to eIF-2 must exchange with GTP by way of a reaction catalyzed by eIF-2B.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q5E9D0|IF2B_BOVIN Eukaryotic translation initiation factor 2 subunit 2 OS=Bos taurus GN=EIF2S2 PE=2 SV=1

 Score =  169 bits (428), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 77/124 (62%), Positives = 96/124 (77%), Gaps = 2/124 (1%)

Query: 98  DGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGT 155
           DG     Q  P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GT
Sbjct: 155 DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGT 214

Query: 156 KKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRY 215
           KKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+KGRF  K  E +LRRY
Sbjct: 215 KKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRY 274

Query: 216 VSKY 219
           + +Y
Sbjct: 275 IKEY 278

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. This complex binds to a 40S ribosomal subunit, followed by mRNA binding to form a 43S preinitiation complex. Junction of the 60S ribosomal subunit to form the 80S initiation complex is preceded by hydrolysis of the GTP bound to eIF-2 and release of an eIF-2-GDP binary complex. In order for eIF-2 to recycle and catalyze another round of initiation, the GDP bound to eIF-2 must exchange with GTP by way of a reaction catalyzed by eIF-2B.

Bos taurus (taxid: 9913)

>sp|P41375|IF2B_DROME Eukaryotic translation initiation factor 2 subunit 2 OS=Drosophila melanogaster GN=eIF-2beta PE=1 SV=1

 Score =  162 bits (409), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/145 (54%), Positives = 101/145 (69%), Gaps = 8/145 (5%)

Query: 76  LNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPE 135
           L++   D  DD      E+DE + S        W GSDRDY Y+ELL RVF I+ + NP+
Sbjct: 120 LDELFADQADDDKSEDKENDEDNSS-------TWFGSDRDYTYDELLKRVFEIILDKNPD 172

Query: 136 LAGDRR-RTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQ 194
           +A  R+ + VMRPPQVLR GTKKT F NFMD+ KT+HR P H++ FLLAELGTSGS+DG 
Sbjct: 173 MAAGRKPKFVMRPPQVLRVGTKKTSFANFMDIAKTLHRLPKHLLDFLLAELGTSGSMDGN 232

Query: 195 QRLVVKGRFAPKNFEGILRRYVSKY 219
           Q+L++KGRF PK  E +LRRY+ +Y
Sbjct: 233 QQLIIKGRFQPKQIENVLRRYIKEY 257

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. This preinitiation complex mediates ribosomal recognition of a start codon during the scanning process of the leader region.

Drosophila melanogaster (taxid: 7227)

>sp|Q54T27|IF2B_DICDI Eukaryotic translation initiation factor 2 subunit 2 OS=Dictyostelium discoideum GN=eif2s2 PE=3 SV=1

 Score =  149 bits (375), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 61/123 (49%), Positives = 93/123 (75%), Gaps = 1/123 (0%)

Query: 97  ADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTK 156
           +DG    +   PW G+DRDY+Y EL  R++++L+ NNP+L  D++RT M+PPQV+REGTK
Sbjct: 144 SDGDTFVQGTIPWAGTDRDYKYSELTYRIYHLLQANNPDLISDQKRT-MKPPQVMREGTK 202

Query: 157 KTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYV 216
           KT++ NF ++C T++R+ +HV  ++ AELGT+GS+DG QRLV++GRF     E ++R Y+
Sbjct: 203 KTIWANFAEICGTLNRKVEHVYNYVFAELGTNGSIDGNQRLVIRGRFKTSQIEIVIRHYI 262

Query: 217 SKY 219
           S+Y
Sbjct: 263 SEY 265

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. This complex binds to a 40S ribosomal subunit, followed by mRNA binding to form a 43S preinitiation complex. Junction of the 60S ribosomal subunit to form the 80S initiation complex is preceded by hydrolysis of the GTP bound to eIF-2 and release of an eIF-2-GDP binary complex. In order for eIF-2 to recycle and catalyze another round of initiation, the GDP bound to eIF-2 must exchange with GTP by way of a reaction catalyzed by eIF-2B.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
225434323	269	PREDICTED: eukaryotic translation initia	0.920	0.817	0.841	5e-96
297745750	290	unnamed protein product [Vitis vinifera]	0.920	0.758	0.841	6e-96
224126981	270	predicted protein [Populus trichocarpa]	0.920	0.814	0.806	2e-92
118488478	270	unknown [Populus trichocarpa]	0.920	0.814	0.801	2e-92
255648391	268	unknown [Glycine max]	0.916	0.817	0.814	1e-90
449529178	270	PREDICTED: eukaryotic translation initia	0.920	0.814	0.801	5e-90
356499030	354	PREDICTED: eukaryotic translation initia	0.916	0.618	0.809	8e-90
449443396	269	PREDICTED: eukaryotic translation initia	0.916	0.814	0.797	1e-88
255637249	268	unknown [Glycine max]	0.916	0.817	0.800	2e-88
356553184	268	PREDICTED: eukaryotic translation initia	0.916	0.817	0.800	2e-88

>gi|225434323|ref|XP_002265847.1| PREDICTED: eukaryotic translation initiation factor 2 subunit beta [Vitis vinifera]

 Score =  356 bits (913), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 186/221 (84%), Positives = 205/221 (92%), Gaps = 1/221 (0%)

Query: 1   MTDENQVDVKDEVAELAPFDPTKKKKKKKVVIQDPSDDSVDKLAEKTETLSVSEGLESTF 60
           M DENQ +VKDEVAELAPFDPTKKKKKKKVVIQDP+DDSVDKLAEKTE+LSVSEG+E+TF
Sbjct: 1   MADENQNEVKDEVAELAPFDPTKKKKKKKVVIQDPADDSVDKLAEKTESLSVSEGVENTF 60

Query: 61  TGLKKKKKKPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEE 120
           +G+KKKKKKPVE+ +LND+ GD  +DLD H GED+E +G    + RYPWEGSDRDY+YEE
Sbjct: 61  SGMKKKKKKPVETDILNDDGGDGKEDLDDHNGEDEEGEGIV-LQPRYPWEGSDRDYKYEE 119

Query: 121 LLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTF 180
           LLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVM F
Sbjct: 120 LLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAF 179

Query: 181 LLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVSKYFL 221
           LLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRY+++Y +
Sbjct: 180 LLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYINEYVI 220

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745750|emb|CBI15806.3| unnamed protein product [Vitis vinifera]

 Score =  355 bits (912), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 186/221 (84%), Positives = 205/221 (92%), Gaps = 1/221 (0%)

Query: 1   MTDENQVDVKDEVAELAPFDPTKKKKKKKVVIQDPSDDSVDKLAEKTETLSVSEGLESTF 60
           M DENQ +VKDEVAELAPFDPTKKKKKKKVVIQDP+DDSVDKLAEKTE+LSVSEG+E+TF
Sbjct: 22  MADENQNEVKDEVAELAPFDPTKKKKKKKVVIQDPADDSVDKLAEKTESLSVSEGVENTF 81

Query: 61  TGLKKKKKKPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEE 120
           +G+KKKKKKPVE+ +LND+ GD  +DLD H GED+E +G    + RYPWEGSDRDY+YEE
Sbjct: 82  SGMKKKKKKPVETDILNDDGGDGKEDLDDHNGEDEEGEGIV-LQPRYPWEGSDRDYKYEE 140

Query: 121 LLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTF 180
           LLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVM F
Sbjct: 141 LLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAF 200

Query: 181 LLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVSKYFL 221
           LLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRY+++Y +
Sbjct: 201 LLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYINEYVI 241

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126981|ref|XP_002319977.1| predicted protein [Populus trichocarpa] gi|222858353|gb|EEE95900.1| predicted protein [Populus trichocarpa]

 Score =  344 bits (883), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 179/222 (80%), Positives = 205/222 (92%), Gaps = 2/222 (0%)

Query: 1   MTDENQVDVKDEVAELAPFDPTKKKKKKKVVIQDPSDDSVDKLAEKTETLSVSEGLESTF 60
           M D+N  D+KDEVAELAPFDPTKKKKKKKVVIQ+ +D+SVD LAEKTE+LSVS+GLES+F
Sbjct: 1   MADDN-TDLKDEVAELAPFDPTKKKKKKKVVIQENADESVDSLAEKTESLSVSDGLESSF 59

Query: 61  TGLKKKKKKPVESSLLNDEIGDAGD-DLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYE 119
           TGLKKKKKKPVE+SLL++E GDAG+ DLD H GE++  +G+   +QR+PW+G+DRDY+YE
Sbjct: 60  TGLKKKKKKPVETSLLDEETGDAGEEDLDVHAGEEENGEGADLQQQRFPWDGTDRDYDYE 119

Query: 120 ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMT 179
           ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQ DHVM 
Sbjct: 120 ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQADHVMA 179

Query: 180 FLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVSKYFL 221
           FLLAELGTSGSLDGQQRLV+KGRFAPKNFEGILRRY+++Y +
Sbjct: 180 FLLAELGTSGSLDGQQRLVIKGRFAPKNFEGILRRYINEYVI 221

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488478|gb|ABK96053.1| unknown [Populus trichocarpa]

 Score =  344 bits (883), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 178/222 (80%), Positives = 205/222 (92%), Gaps = 2/222 (0%)

Query: 1   MTDENQVDVKDEVAELAPFDPTKKKKKKKVVIQDPSDDSVDKLAEKTETLSVSEGLESTF 60
           M D+N  D+KDEVAELAPFDPTKKKKK+KVVIQ+ +D+SVD LAEKTE+LSVS+GLES+F
Sbjct: 1   MADDN-TDLKDEVAELAPFDPTKKKKKEKVVIQENADESVDSLAEKTESLSVSDGLESSF 59

Query: 61  TGLKKKKKKPVESSLLNDEIGDAGD-DLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYE 119
           TGLKKKKKKPVE+SLL++E GDAG+ DLD H GE++  +G+   +QR+PW+G+DRDY+YE
Sbjct: 60  TGLKKKKKKPVETSLLDEETGDAGEEDLDVHAGEEENGEGADLQQQRFPWDGTDRDYDYE 119

Query: 120 ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMT 179
           ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQ DHVM 
Sbjct: 120 ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQADHVMA 179

Query: 180 FLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVSKYFL 221
           FLLAELGTSGSLDGQQRLV+KGRFAPKNFEGILRRY+++Y +
Sbjct: 180 FLLAELGTSGSLDGQQRLVIKGRFAPKNFEGILRRYINEYVI 221

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255648391|gb|ACU24646.1| unknown [Glycine max]

 Score =  338 bits (866), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 180/221 (81%), Positives = 193/221 (87%), Gaps = 2/221 (0%)

Query: 1   MTDENQVDVKDEVAELAPFDPTKKKKKKKVVIQDPSDDSVDKLAEKTETLSVSEGLESTF 60
           M DE   ++K+EV E+ PFDPTKKKKKKK+ I DP+DD V+KLAEKTE LSVSEG+E+ F
Sbjct: 1   MADETPNEMKEEVPEIVPFDPTKKKKKKKITIVDPADDPVEKLAEKTENLSVSEGVETAF 60

Query: 61  TGLKKKKKKPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEE 120
            GLKKKKKKPVE S LNDE GDA +DLD H  EDDE  G   P  RYPWEGSDRDYEYEE
Sbjct: 61  AGLKKKKKKPVEMSNLNDESGDANEDLDDH-PEDDEG-GVVAPEARYPWEGSDRDYEYEE 118

Query: 121 LLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTF 180
           LLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVM F
Sbjct: 119 LLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAF 178

Query: 181 LLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVSKYFL 221
           LLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYV++Y +
Sbjct: 179 LLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVI 219

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449529178|ref|XP_004171578.1| PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Cucumis sativus]

 Score =  336 bits (861), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 178/222 (80%), Positives = 202/222 (90%), Gaps = 2/222 (0%)

Query: 1   MTDENQVDVKDEVAELAPFDPTKKKKKKKVVIQDPSDDSVDKLAEKTETLSVSEGLES-T 59
           M DE Q DV D+VA++APFDPTKKKKKKKVV+QDP+D+SVDKLAEKTE+LSVS+GLE+ T
Sbjct: 1   MADEVQNDVNDQVADIAPFDPTKKKKKKKVVLQDPTDESVDKLAEKTESLSVSDGLEAAT 60

Query: 60  FTGLKKKKKKPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYE 119
           F+GLKKKKKKPVE+S LN++  DA +DL+   GE+++ +G    + RYPWEG+DRDYEYE
Sbjct: 61  FSGLKKKKKKPVEASSLNEDGADATEDLEDQAGENEDREGLV-LQYRYPWEGTDRDYEYE 119

Query: 120 ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMT 179
           ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVM 
Sbjct: 120 ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMA 179

Query: 180 FLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVSKYFL 221
           FLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYV++Y +
Sbjct: 180 FLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVI 221

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499030|ref|XP_003518347.1| PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Glycine max]

 Score =  335 bits (860), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 179/221 (80%), Positives = 193/221 (87%), Gaps = 2/221 (0%)

Query: 1   MTDENQVDVKDEVAELAPFDPTKKKKKKKVVIQDPSDDSVDKLAEKTETLSVSEGLESTF 60
           M DE   ++K+EV E+ PFDPTKKKKKKK+ I DP+DD V+KLAEKTE LSVSEG+E+ F
Sbjct: 87  MADETPNEMKEEVPEIVPFDPTKKKKKKKITIVDPADDPVEKLAEKTENLSVSEGVETAF 146

Query: 61  TGLKKKKKKPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEE 120
            GLKKKKKKPVE S LNDE GDA +DLD H  EDDE +    P  RYPWEGSDRDYEYEE
Sbjct: 147 AGLKKKKKKPVEMSNLNDESGDANEDLDDH-PEDDEGEVVA-PEARYPWEGSDRDYEYEE 204

Query: 121 LLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTF 180
           LLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVM F
Sbjct: 205 LLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAF 264

Query: 181 LLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVSKYFL 221
           LLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYV++Y +
Sbjct: 265 LLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVI 305

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443396|ref|XP_004139463.1| PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Cucumis sativus]

 Score =  332 bits (850), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 177/222 (79%), Positives = 201/222 (90%), Gaps = 3/222 (1%)

Query: 1   MTDENQVDVKDEVAELAPFDPTKKKKKKKVVIQDPSDDSVDKLAEKTETLSVSEGLES-T 59
           M DE Q DV D+VA++APFDPTKKKKKK VV+QDP+D+SVDKLAEKTE+LSVS+GLE+ T
Sbjct: 1   MADEVQNDVNDQVADIAPFDPTKKKKKK-VVLQDPTDESVDKLAEKTESLSVSDGLEAAT 59

Query: 60  FTGLKKKKKKPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYE 119
           F+GLKKKKKKPVE+S LN++  DA +DL+   GE+++ +G    + RYPWEG+DRDYEYE
Sbjct: 60  FSGLKKKKKKPVEASSLNEDGADATEDLEDQAGENEDREGLV-LQYRYPWEGTDRDYEYE 118

Query: 120 ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMT 179
           ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVM 
Sbjct: 119 ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMA 178

Query: 180 FLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVSKYFL 221
           FLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYV++Y +
Sbjct: 179 FLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVI 220

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637249|gb|ACU18955.1| unknown [Glycine max]

 Score =  330 bits (847), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 177/221 (80%), Positives = 194/221 (87%), Gaps = 2/221 (0%)

Query: 1   MTDENQVDVKDEVAELAPFDPTKKKKKKKVVIQDPSDDSVDKLAEKTETLSVSEGLESTF 60
           M DE   ++K+EV E+ PFDPTKKKKKKK+ I DP+D+ V+KLAEKTE LSVSEG+E+ F
Sbjct: 1   MADETPNEMKEEVPEIVPFDPTKKKKKKKITIVDPADEPVEKLAEKTENLSVSEGVETAF 60

Query: 61  TGLKKKKKKPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEE 120
           TGLKKKKKKPVE   LNDE GDA +DLD H  EDDE +    P+ RYPWEGSDR+YEYEE
Sbjct: 61  TGLKKKKKKPVEMGNLNDESGDAIEDLDDH-PEDDEGEMVV-PQARYPWEGSDRNYEYEE 118

Query: 121 LLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTF 180
           LLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVM F
Sbjct: 119 LLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAF 178

Query: 181 LLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVSKYFL 221
           LLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYV++Y +
Sbjct: 179 LLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVI 219

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553184|ref|XP_003544938.1| PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Glycine max]

 Score =  330 bits (847), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 177/221 (80%), Positives = 194/221 (87%), Gaps = 2/221 (0%)

Query: 1   MTDENQVDVKDEVAELAPFDPTKKKKKKKVVIQDPSDDSVDKLAEKTETLSVSEGLESTF 60
           M DE   ++K+EV E+ PFDPTKKKKKKK+ I DP+D+ V+KLAEKTE LSVSEG+E+ F
Sbjct: 1   MADETPNEMKEEVPEIVPFDPTKKKKKKKITIVDPADEPVEKLAEKTENLSVSEGVETAF 60

Query: 61  TGLKKKKKKPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEE 120
           TGLKKKKKKPVE   LNDE GDA +DLD H  EDDE +    P+ RYPWEGSDR+YEYEE
Sbjct: 61  TGLKKKKKKPVEMGNLNDESGDAIEDLDDH-PEDDEGEMVV-PQARYPWEGSDRNYEYEE 118

Query: 121 LLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTF 180
           LLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVM F
Sbjct: 119 LLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAF 178

Query: 181 LLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVSKYFL 221
           LLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYV++Y +
Sbjct: 179 LLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVI 219

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
TAIR|locus:2147162	268	EIF2 BETA "eukaryotic translat	0.920	0.820	0.671	1e-75
UNIPROTKB|F1PZ47	333	EIF2S2 "Uncharacterized protei	0.585	0.420	0.569	6.8e-40
UNIPROTKB|P20042	333	EIF2S2 "Eukaryotic translation	0.585	0.420	0.569	6.8e-40
UNIPROTKB|F1S4Y8	328	EIF2S2 "Uncharacterized protei	0.585	0.426	0.569	6.8e-40
UNIPROTKB|P41035	333	EIF2S2 "Eukaryotic translation	0.585	0.420	0.569	6.8e-40
UNIPROTKB|Q4R5G5	333	Q4R5G5 "Macaca fascicularis br	0.585	0.420	0.569	6.8e-40
RGD|735192	333	Eif2s2 "eukaryotic translation	0.585	0.420	0.569	6.8e-40
UNIPROTKB|Q5E9D0	333	EIF2S2 "Eukaryotic translation	0.585	0.420	0.562	8.7e-40
MGI|MGI:1914454	331	Eif2s2 "eukaryotic translation	0.581	0.419	0.559	2.3e-39
ZFIN|ZDB-GENE-030131-3085	327	eif2s2 "eukaryotic translation	0.573	0.418	0.577	4.8e-39

TAIR|locus:2147162 EIF2 BETA "eukaryotic translation initiation factor 2 beta subunit" [Arabidopsis thaliana (taxid:3702)]

 Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
 Identities = 149/222 (67%), Positives = 177/222 (79%)

Query:     1 MTDENQVDVKDEVAELAPFDPTXXXXXXXVVIQDPSDDSVDKL-AEKTETLSVSEGLEST 59
             M DE   ++++E  +LAPFDP+       VVIQ+P +D  +    EK+++L V++GLES+
Sbjct:     1 MADEIN-EIREEQEQLAPFDPSKKKKKKKVVIQEPVEDLAESSQTEKSDSLPVNDGLESS 59

Query:    60 FTGLXXXXXXPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYE 119
             FTG+      P ESSLLN+E  DAG+DLD    ++ E +     +QRYPWEGS+RDY Y+
Sbjct:    60 FTGMKKKKKKPTESSLLNNESVDAGEDLDEIANDEQEGEEGIVLQQRYPWEGSERDYIYD 119

Query:   120 ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMT 179
             ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVM 
Sbjct:   120 ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMQ 179

Query:   180 FLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVSKYFL 221
             +LLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRY++ Y +
Sbjct:   180 YLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYITDYVI 221

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006413 "translational initiation" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

UNIPROTKB|F1PZ47 EIF2S2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 82/144 (56%), Positives = 105/144 (72%)

Query:    78 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL 136
             DEI +  + L+    + D  DG     Q  P W GS+RDY YEELL RVFNI+RE NP++
Sbjct:   137 DEILEKDEALEDEDSKKD--DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDM 194

Query:   137 -AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQ 195
              AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  
Sbjct:   195 VAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNN 254

Query:   196 RLVVKGRFAPKNFEGILRRYVSKY 219
             +LV+KGRF  K  E +LRRY+ +Y
Sbjct:   255 QLVIKGRFQQKQIENVLRRYIKEY 278

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|P20042 EIF2S2 "Eukaryotic translation initiation factor 2 subunit 2" [Homo sapiens (taxid:9606)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 82/144 (56%), Positives = 105/144 (72%)

Query:    78 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL 136
             DEI +  + L+    + D  DG     Q  P W GS+RDY YEELL RVFNI+RE NP++
Sbjct:   137 DEILEKDEALEDEDNKKD--DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDM 194

Query:   137 -AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQ 195
              AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  
Sbjct:   195 VAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNN 254

Query:   196 RLVVKGRFAPKNFEGILRRYVSKY 219
             +LV+KGRF  K  E +LRRY+ +Y
Sbjct:   255 QLVIKGRFQQKQIENVLRRYIKEY 278

GO:0046872 "metal ion binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IDA

GO:0003723 "RNA binding" evidence=TAS

GO:0005850 "eukaryotic translation initiation factor 2 complex" evidence=TAS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1S4Y8 EIF2S2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 82/144 (56%), Positives = 105/144 (72%)

Query:    78 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL 136
             DEI +  + L+    + D  DG     Q  P W GS+RDY YEELL RVFNI+RE NP++
Sbjct:   132 DEILEKDEALEDEDSKKD--DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDM 189

Query:   137 -AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQ 195
              AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  
Sbjct:   190 VAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNN 249

Query:   196 RLVVKGRFAPKNFEGILRRYVSKY 219
             +LV+KGRF  K  E +LRRY+ +Y
Sbjct:   250 QLVIKGRFQQKQIENVLRRYIKEY 273

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|P41035 EIF2S2 "Eukaryotic translation initiation factor 2 subunit 2" [Oryctolagus cuniculus (taxid:9986)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 82/144 (56%), Positives = 105/144 (72%)

Query:    78 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL 136
             DEI +  + L+    + D  DG     Q  P W GS+RDY YEELL RVFNI+RE NP++
Sbjct:   137 DEILEKDEALEDEDSKKD--DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDM 194

Query:   137 -AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQ 195
              AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  
Sbjct:   195 VAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNN 254

Query:   196 RLVVKGRFAPKNFEGILRRYVSKY 219
             +LV+KGRF  K  E +LRRY+ +Y
Sbjct:   255 QLVIKGRFQQKQIENVLRRYIKEY 278

GO:0003743 "translation initiation factor activity" evidence=ISS

UNIPROTKB|Q4R5G5 Q4R5G5 "Macaca fascicularis brain cDNA clone: QorA-11002, similar to human eukaryotic translation initiation factor 2, subunit 2beta, 38kDa (EIF2S2), mRNA, RefSeq: NM_003908.2" [Macaca fascicularis (taxid:9541)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 82/144 (56%), Positives = 105/144 (72%)

Query:    78 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL 136
             DEI +  + L+    + D  DG     Q  P W GS+RDY YEELL RVFNI+RE NP++
Sbjct:   137 DEILEKDEALEDEDSKKD--DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDM 194

Query:   137 -AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQ 195
              AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  
Sbjct:   195 VAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNN 254

Query:   196 RLVVKGRFAPKNFEGILRRYVSKY 219
             +LV+KGRF  K  E +LRRY+ +Y
Sbjct:   255 QLVIKGRFQQKQIENVLRRYIKEY 278

GO:0003743 "translation initiation factor activity" evidence=ISS

RGD|735192 Eif2s2 "eukaryotic translation initiation factor 2, subunit 2 beta" [Rattus norvegicus (taxid:10116)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 82/144 (56%), Positives = 105/144 (72%)

Query:    78 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL 136
             DEI +  + L+    + D  DG     Q  P W GS+RDY YEELL RVFNI+RE NP++
Sbjct:   137 DEILEKDEALEDEDSKKD--DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDM 194

Query:   137 -AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQ 195
              AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  
Sbjct:   195 VAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNN 254

Query:   196 RLVVKGRFAPKNFEGILRRYVSKY 219
             +LV+KGRF  K  E +LRRY+ +Y
Sbjct:   255 QLVIKGRFQQKQIENVLRRYIKEY 278

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0002176 "male germ cell proliferation" evidence=ISO

GO:0003743 "translation initiation factor activity" evidence=ISO;ISS

GO:0008584 "male gonad development" evidence=ISO

UNIPROTKB|Q5E9D0 EIF2S2 "Eukaryotic translation initiation factor 2 subunit 2" [Bos taurus (taxid:9913)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 81/144 (56%), Positives = 105/144 (72%)

Query:    78 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL 136
             DE+ +  + L+    + D  DG     Q  P W GS+RDY YEELL RVFNI+RE NP++
Sbjct:   137 DEVLEKDEALEDEDSKKD--DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDM 194

Query:   137 -AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQ 195
              AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  
Sbjct:   195 VAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNN 254

Query:   196 RLVVKGRFAPKNFEGILRRYVSKY 219
             +LV+KGRF  K  E +LRRY+ +Y
Sbjct:   255 QLVIKGRFQQKQIENVLRRYIKEY 278

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

MGI|MGI:1914454 Eif2s2 "eukaryotic translation initiation factor 2, subunit 2 (beta)" [Mus musculus (taxid:10090)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 80/143 (55%), Positives = 104/143 (72%)

Query:    78 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPEL- 136
             DEI +  + L+    ED + D       +  W GS+RDY YEELL RVFNI+RE NP++ 
Sbjct:   137 DEILEKDEALED---EDSKKDDGISFSSQTAWAGSERDYTYEELLNRVFNIMREKNPDMV 193

Query:   137 AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQR 196
             AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +
Sbjct:   194 AGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQ 253

Query:   197 LVVKGRFAPKNFEGILRRYVSKY 219
             LV+KGRF  K  E +LRRY+ +Y
Sbjct:   254 LVIKGRFQQKQIENVLRRYIKEY 276

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0002176 "male germ cell proliferation" evidence=IMP

GO:0003743 "translation initiation factor activity" evidence=ISO

GO:0005575 "cellular_component" evidence=ND

GO:0006412 "translation" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0008584 "male gonad development" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

ZFIN|ZDB-GENE-030131-3085 eif2s2 "eukaryotic translation initiation factor 2, subunit 2 beta" [Danio rerio (taxid:7955)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 82/142 (57%), Positives = 104/142 (73%)

Query:    82 DAGDDLDGHVGEDDE--ADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-A 137
             D+    DG V +DD   AD      Q  P W GS+RDY Y+ELL RVFNI+RE NP++ A
Sbjct:   132 DSQSKEDG-VEDDDSKNADDITFSTQTGPAWAGSERDYTYDELLNRVFNIMREKNPDMVA 190

Query:   138 GDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRL 197
             G++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +L
Sbjct:   191 GEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLVFLLAELGTSGSIDGNNQL 250

Query:   198 VVKGRFAPKNFEGILRRYVSKY 219
             V+KGRF  K  E +LRRY+ +Y
Sbjct:   251 VIKGRFQQKQIENVLRRYIKEY 272

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q41969	IF2B_ARATH	No assigned EC number	0.7297	0.9205	0.8208	yes	no
P55871	IF2B_MALDO	No assigned EC number	0.7792	0.9246	0.8154	N/A	no
O24473	IF2B_WHEAT	No assigned EC number	0.7488	0.9163	0.8111	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	239
smart00653	110	smart00653, eIF2B_5, domain present in translation	5e-45
pfam01873	125	pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5	8e-43
COG1601	151	COG1601, GCD7, Translation initiation factor 2, be	9e-24
PRK03988	138	PRK03988, PRK03988, translation initiation factor	9e-24
PRK12336	201	PRK12336, PRK12336, translation initiation factor	8e-21
TIGR00311	133	TIGR00311, aIF-2beta, translation initiation facto	1e-12

>gnl|CDD|214764 smart00653, eIF2B_5, domain present in translation initiation factor eIF2B and eIF5

 Score =  146 bits (370), Expect = 5e-45
 Identities = 48/80 (60%), Positives = 59/80 (73%)

Query: 140 RRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVV 199
             R  M PPQVLREG  KTV VNF D+ K ++R PDHV+ FLLAELGT GS+DG+ RL+V
Sbjct: 1   FYRFKMPPPQVLREGKGKTVIVNFADIAKALNRPPDHVLKFLLAELGTQGSIDGKGRLIV 60

Query: 200 KGRFAPKNFEGILRRYVSKY 219
            GRF PK  + +LRRY+ +Y
Sbjct: 61  NGRFTPKKLQDLLRRYIKEY 80

Length = 110

>gnl|CDD|216754 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5

 Score =  140 bits (356), Expect = 8e-43
 Identities = 46/93 (49%), Positives = 64/93 (68%), Gaps = 1/93 (1%)

Query: 130 RENNPE-LAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTS 188
              NP+ +AGD+ R  M PPQV  EG  KT+ VNF D+ K ++R P+H++ +LLAELGT 
Sbjct: 3   FNQNPDRVAGDKFRFEMPPPQVKIEGKIKTIIVNFSDIAKALNRPPEHLLKYLLAELGTQ 62

Query: 189 GSLDGQQRLVVKGRFAPKNFEGILRRYVSKYFL 221
           GS+DG+ RL+V GRF PK  + +L  Y+ +Y L
Sbjct: 63  GSIDGKGRLIVNGRFTPKKLQDVLDDYIKEYVL 95

This family includes the N terminus of eIF-5, and the C terminus of eIF-2 beta. This region corresponds to the whole of the archaebacterial eIF-2 beta homologue. The region contains a putative zinc binding C4 finger. Length = 125

>gnl|CDD|224517 COG1601, GCD7, Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain [Translation, ribosomal structure and biogenesis]

 Score = 92.8 bits (231), Expect = 9e-24
 Identities = 39/109 (35%), Positives = 66/109 (60%), Gaps = 6/109 (5%)

Query: 112 SDRDYEYEELLGRVFNILRENNPELAGDRR-RTVMRPPQVLREGTKKTVFVNFMDLCKTM 170
           S+ + +YEELL R +       PE       R  +  P++ REG  +T+  NF D+ + +
Sbjct: 2   SEMEDDYEELLERAY----SELPEKEVKNDERFRIPEPEINREG-NRTIIRNFGDIAEAL 56

Query: 171 HRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVSKY 219
           +R P+H++ FL  ELGT+GS+DG+ RLV++G+F+       + RY+++Y
Sbjct: 57  NRDPEHLVKFLKKELGTAGSIDGKGRLVLQGKFSDSEIVNEIERYIAEY 105

Length = 151

>gnl|CDD|235189 PRK03988, PRK03988, translation initiation factor IF-2 subunit beta; Validated

 Score = 92.3 bits (230), Expect = 9e-24
 Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 6/105 (5%)

Query: 115 DYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQP 174
            Y+YEELL R +  L    PE      R  +  P V  EG + T+  NF ++   ++R P
Sbjct: 4   YYDYEELLDRAYEKL----PEKVFKESRFEVPKPDVRIEGNR-TIIRNFKEIADRLNRDP 58

Query: 175 DHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVSKY 219
            HV  FLL ELGT+G+++G  RL+++G+F+P+     + RYV +Y
Sbjct: 59  KHVAKFLLKELGTAGNIEG-GRLILQGKFSPRVINEKIDRYVKEY 102

Length = 138

>gnl|CDD|183451 PRK12336, PRK12336, translation initiation factor IF-2 subunit beta; Provisional

 Score = 86.2 bits (214), Expect = 8e-21
 Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 6/104 (5%)

Query: 116 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPD 175
            +YE LL R   +L    PE      R  +  P++  EG K T+  NF ++   ++R PD
Sbjct: 1   MDYESLLDRAMEVL----PEPTKSGERFSIPEPKIFIEG-KTTILTNFGEIADALNRDPD 55

Query: 176 HVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVSKY 219
           H+M FL  ELGT+G ++G  R V  G+F  ++ +  +  YV +Y
Sbjct: 56  HLMKFLQRELGTAGKIEG-GRAVFNGKFTEEDIQAAIDAYVDEY 98

Length = 201

>gnl|CDD|129411 TIGR00311, aIF-2beta, translation initiation factor aIF-2, beta subunit, putative

 Score = 62.9 bits (153), Expect = 1e-12
 Identities = 33/105 (31%), Positives = 60/105 (57%), Gaps = 6/105 (5%)

Query: 117 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDH 176
           +YE+LL R  + L    P+   + +R  +    ++ EG + T+  NF ++ K ++R   H
Sbjct: 1   DYEKLLERAIDQL----PDEVFETKRFEVPKAYIVIEGNR-TIIQNFREVAKALNRDEQH 55

Query: 177 VMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVSKYFL 221
           ++ +LL ELGT+G+L+G  RL+++G+F        +  YV KY +
Sbjct: 56  LLKYLLKELGTAGNLEG-GRLILQGKFTHFLLNERIEDYVRKYVI 99

The trusted cutoff is set high enough to select only archaeal members. The suggested cutoff is set to include most eukaryotic members but largely exclude the related eIF-5 [Protein synthesis, Translation factors]. Length = 133

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	239
KOG2768	231	consensus Translation initiation factor 2, beta su	100.0
PRK03988	138	translation initiation factor IF-2 subunit beta; V	100.0
TIGR00311	133	aIF-2beta translation initiation factor aIF-2, bet	100.0
PRK12336	201	translation initiation factor IF-2 subunit beta; P	100.0
smart00653	110	eIF2B_5 domain present in translation initiation f	100.0
PF01873	125	eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro:	100.0
COG1601	151	GCD7 Translation initiation factor 2, beta subunit	99.97
KOG2767	400	consensus Translation initiation factor 5 (eIF-5)	99.92
PF01253	83	SUI1: Translation initiation factor SUI1; InterPro	94.32
PRK00939	99	translation initiation factor Sui1; Reviewed	90.85
cd00474	77	SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation fac	90.18
TIGR01158	101	SUI1_rel translation initation factor SUI1, putati	88.18
TIGR01159	173	DRP1 density-regulated protein DRP1. This protein	86.32
COG0023	104	SUI1 Translation initiation factor 1 (eIF-1/SUI1)	82.49

>KOG2768 consensus Translation initiation factor 2, beta subunit (eIF-2beta) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.5e-54  Score=380.09  Aligned_cols=176  Identities=58%  Similarity=0.862  Sum_probs=147.9

Q ss_pred             ccccCccccccccccccCCCccCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHH
Q 026382           51 SVSEGLESTFTGLKKKKKKPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILR  130 (239)
Q Consensus        51 ~~~d~~~~~~~~~kKKkKK~~~~~~~~~e~~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~y~YeeLL~R~~~~L~  130 (239)
                      .++++++..+.++||||||++..+.++++...+++..+....++.++ +  .+++.++|.|++++|.|++||.|+|++|+
T Consensus        17 ~~~~~l~~~~~~kKKKKkk~k~~s~~ee~~~~~~e~~~e~~~~~~e~-~--~~~~~~~~~g~e~dy~Y~ElL~rvf~ilr   93 (231)
T KOG2768|consen   17 EASERLDFLSLKKKKKKKKSKSLSALEEEDVNAGEFADEDKDPDKEV-R--QNQQGVSWVGSEPDYTYYELLSRVFNILR   93 (231)
T ss_pred             chhhcccccccccccccCCCCchhhhHHHHHhccchhhhccChhhcc-c--cccccccccccCCCccHHHHHHHHHHHHH
Confidence            34566777777777777777766555555555554333222221121 1  23333999999999999999999999999


Q ss_pred             hcCCCccccccccccCCCeEEEeCceeeEEeehHHHHHHhCCChHHHHHHHHHhhcCceeecCCceEEEEeecChHHHHH
Q 026382          131 ENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEG  210 (239)
Q Consensus       131 ~~nPd~~~~~~Rf~mP~p~V~reG~kKTvi~NF~eI~k~L~R~peHv~kfl~~ELGT~gsidg~~rLII~Grf~~k~Ie~  210 (239)
                      ++|||++|++.+|.|+||||.|+| |||+|+||+|||+.|||+|+||++||++||||+|||||++||||+|||++++||+
T Consensus        94 eknpe~aGe~~k~v~~PPqvlReg-kkT~f~Nf~Dick~mhR~pdHv~~FLlAELgTsGSidg~~rLviKGrfq~kq~e~  172 (231)
T KOG2768|consen   94 EKNPELAGEKRKFVMKPPQVLREG-KKTVFVNFADICKTMHRSPDHVMQFLLAELGTSGSIDGQQRLVIKGRFQQKQFEN  172 (231)
T ss_pred             hcCchhcccccceeeCCHHHHhhc-cceeeeeHHHHHHHhccChHHHHHHHHHHhccccccCCCceEEEeccccHHHHHH
Confidence            999999999999999999999999 6999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccccCCCCcCcc
Q 026382          211 ILRRYVSKYFLKSSFVLNIY  230 (239)
Q Consensus       211 vL~kYI~eYVlC~~C~~~~~  230 (239)
                      +||+||.+||+|..|.-|.+
T Consensus       173 VLRrYI~eyV~C~~CkSpdt  192 (231)
T KOG2768|consen  173 VLRRYIKEYVTCKTCKSPDT  192 (231)
T ss_pred             HHHHHHHHheEeeecCChhH
Confidence            99999999999999998765

>PRK03988 translation initiation factor IF-2 subunit beta; Validated

Probab=100.00  E-value=1.9e-42  Score=286.98  Aligned_cols=113  Identities=35%  Similarity=0.646  Sum_probs=107.3

Q ss_pred             CccHHHHHHHHHHHHHhcCCCccccccccccCCCeEEEeCceeeEEeehHHHHHHhCCChHHHHHHHHHhhcCceeecCC
Q 026382          115 DYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQ  194 (239)
Q Consensus       115 ~y~YeeLL~R~~~~L~~~nPd~~~~~~Rf~mP~p~V~reG~kKTvi~NF~eI~k~L~R~peHv~kfl~~ELGT~gsidg~  194 (239)
                      +|+|++||+|||+.|    |+..++.+||+||+|+|.++|+ ||+|+||.+||++|||+|+||++||++||||+|+|+ +
T Consensus         4 ~~~Y~~lL~R~~~~l----p~~~~~~~R~~~p~~~v~~eG~-kTvi~Nf~~I~~~L~R~~~hv~ky~~~ELgt~g~i~-~   77 (138)
T PRK03988          4 YYDYEELLDRAYEKL----PEKVFKESRFEVPKPDVRIEGN-RTIIRNFKEIADRLNRDPKHVAKFLLKELGTAGNIE-G   77 (138)
T ss_pred             ccCHHHHHHHHHHHC----ccccCCCcceeCCCCeEEEEcC-cEEEecHHHHHHHHCCCHHHHHHHHHHHhCCceeec-C
Confidence            689999999999999    8877888999999999999996 899999999999999999999999999999999996 5


Q ss_pred             ceEEEEeecChHHHHHHHHHHHHhccccCCCCcCccCce
Q 026382          195 QRLVVKGRFAPKNFEGILRRYVSKYFLKSSFVLNIYKSV  233 (239)
Q Consensus       195 ~rLII~Grf~~k~Ie~vL~kYI~eYVlC~~C~~~~~~~~  233 (239)
                      ++|||+|+|++++|+++|++||++||+|++|..|.+.=+
T Consensus        78 ~~lii~G~~~~~~i~~~L~~yI~~yVlC~~C~spdT~l~  116 (138)
T PRK03988         78 GRLILQGKFSPRVINEKIDRYVKEYVICPECGSPDTKLI  116 (138)
T ss_pred             CEEEEEEeeCHHHHHHHHHHHHHhcEECCCCCCCCcEEE
Confidence            799999999999999999999999999999999987543

>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative

Probab=100.00  E-value=9.7e-42  Score=281.21  Aligned_cols=111  Identities=30%  Similarity=0.574  Sum_probs=105.5

Q ss_pred             cHHHHHHHHHHHHHhcCCCccccccccccCCCeEEEeCceeeEEeehHHHHHHhCCChHHHHHHHHHhhcCceeecCCce
Q 026382          117 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQR  196 (239)
Q Consensus       117 ~YeeLL~R~~~~L~~~nPd~~~~~~Rf~mP~p~V~reG~kKTvi~NF~eI~k~L~R~peHv~kfl~~ELGT~gsidg~~r  196 (239)
                      +|++||+|||+.|    |+..++.+||+||+|+|.++|+ ||+|.||.+||++|||+|+||++||++||||+|++++ ++
T Consensus         1 ~Y~~lL~R~~~~l----~~~~~~~~R~~mP~~~v~~eG~-kTvi~Nf~~Ia~~L~R~~~~v~ky~~~ELgt~g~i~~-~r   74 (133)
T TIGR00311         1 DYEKLLERAIDQL----PDEVFETKRFEVPKAYIVIEGN-RTIIQNFREVAKALNRDEQHLLKYLLKELGTAGNLEG-GR   74 (133)
T ss_pred             CHHHHHHHHHHHC----ccccCCCccccCCCceEEEEcC-cEEEecHHHHHHHHCCCHHHHHHHHHHHhCCCceecC-CE
Confidence            5999999999999    7877788999999999999996 8999999999999999999999999999999999985 69


Q ss_pred             EEEEeecChHHHHHHHHHHHHhccccCCCCcCccCce
Q 026382          197 LVVKGRFAPKNFEGILRRYVSKYFLKSSFVLNIYKSV  233 (239)
Q Consensus       197 LII~Grf~~k~Ie~vL~kYI~eYVlC~~C~~~~~~~~  233 (239)
                      |||+|+|++++|+++|++||++||+|++|..|.+.=+
T Consensus        75 lii~G~~~~~~i~~~L~~yI~~yVlC~~C~sPdT~l~  111 (133)
T TIGR00311        75 LILQGKFTHFLLNERIEDYVRKYVICRECNRPDTRII  111 (133)
T ss_pred             EEEEeecCHHHHHHHHHHHHhheEECCCCCCCCcEEE
Confidence            9999999999999999999999999999999998643

>PRK12336 translation initiation factor IF-2 subunit beta; Provisional

Probab=100.00  E-value=6.9e-40  Score=285.18  Aligned_cols=112  Identities=34%  Similarity=0.663  Sum_probs=106.9

Q ss_pred             ccHHHHHHHHHHHHHhcCCCccccccccccCCCeEEEeCceeeEEeehHHHHHHhCCChHHHHHHHHHhhcCceeecCCc
Q 026382          116 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQ  195 (239)
Q Consensus       116 y~YeeLL~R~~~~L~~~nPd~~~~~~Rf~mP~p~V~reG~kKTvi~NF~eI~k~L~R~peHv~kfl~~ELGT~gsidg~~  195 (239)
                      |+|++||+|||+.|    |+..++.+||+||+|+|.++|+ ||+|.||.+||++|||+|+||++||++||||+|+|++ +
T Consensus         1 ~~Y~~lL~r~~~~l----~~~~~~~~R~~~p~~~v~~eG~-kT~i~N~~~i~~~l~R~~~~~~ky~~~ELgt~~~~~~-~   74 (201)
T PRK12336          1 MDYESLLDRAMEVL----PEPTKSGERFSIPEPKIFIEGK-TTILTNFGEIADALNRDPDHLMKFLQRELGTAGKIEG-G   74 (201)
T ss_pred             CCHHHHHHHHHHHC----CcccCCccceecCCceEEEEcC-cEEEecHHHHHHHHCCCHHHHHHHHHHHhCCcceecC-C
Confidence            57999999999999    8888889999999999999995 9999999999999999999999999999999999986 5


Q ss_pred             eEEEEeecChHHHHHHHHHHHHhccccCCCCcCccCce
Q 026382          196 RLVVKGRFAPKNFEGILRRYVSKYFLKSSFVLNIYKSV  233 (239)
Q Consensus       196 rLII~Grf~~k~Ie~vL~kYI~eYVlC~~C~~~~~~~~  233 (239)
                      +|||+|+|++++|+++|++||++||+|++|..|.+.=+
T Consensus        75 ~~ii~G~~~~~~i~~~l~~yi~~yV~C~~C~~pdT~l~  112 (201)
T PRK12336         75 RAVFNGKFTEEDIQAAIDAYVDEYVICSECGLPDTRLV  112 (201)
T ss_pred             EEEEEeeeCHHHHHHHHHHHHHheEECCCCCCCCcEEE
Confidence            99999999999999999999999999999999988644

>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5

Probab=100.00  E-value=7.9e-38  Score=250.65  Aligned_cols=93  Identities=53%  Similarity=0.880  Sum_probs=89.5

Q ss_pred             cccccCCCeEEEeCceeeEEeehHHHHHHhCCChHHHHHHHHHhhcCceeecCCceEEEEeecChHHHHHHHHHHHHhcc
Q 026382          141 RRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVSKYF  220 (239)
Q Consensus       141 ~Rf~mP~p~V~reG~kKTvi~NF~eI~k~L~R~peHv~kfl~~ELGT~gsidg~~rLII~Grf~~k~Ie~vL~kYI~eYV  220 (239)
                      +||+||+|+|.++|++||+|.||.+||++|||+|+||++||++||||+|+||++++|||+|+|++++|+++|++||++||
T Consensus         2 ~R~~~p~~~v~~eG~~kTvi~Nf~~I~~~L~R~p~hv~kyl~~ELgt~g~id~~~rlii~G~~~~~~i~~~l~~yI~~yV   81 (110)
T smart00653        2 YRFKMPPPQVLREGKGKTVIVNFADIAKALNRPPDHVLKFLLAELGTQGSIDGKGRLIVNGRFTPKKLQDLLRRYIKEYV   81 (110)
T ss_pred             CccccCCCeEEEEcCCeEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeECCCCeEEEEEeeCHHHHHHHHHHHHHhcE
Confidence            69999999999999779999999999999999999999999999999999999889999999999999999999999999


Q ss_pred             ccCCCCcCccCce
Q 026382          221 LKSSFVLNIYKSV  233 (239)
Q Consensus       221 lC~~C~~~~~~~~  233 (239)
                      +|++|..|.+.=+
T Consensus        82 lC~~C~spdT~l~   94 (110)
T smart00653       82 LCPECGSPDTELI   94 (110)
T ss_pred             ECCCCCCCCcEEE
Confidence            9999999987644

>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []

Probab=100.00  E-value=4.9e-38  Score=256.71  Aligned_cols=101  Identities=44%  Similarity=0.788  Sum_probs=92.0

Q ss_pred             hcCCC-ccccccccccCCCeEEEeCceeeEEeehHHHHHHhCCChHHHHHHHHHhhcCceeecCCceEEEEeecChHHHH
Q 026382          131 ENNPE-LAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFE  209 (239)
Q Consensus       131 ~~nPd-~~~~~~Rf~mP~p~V~reG~kKTvi~NF~eI~k~L~R~peHv~kfl~~ELGT~gsidg~~rLII~Grf~~k~Ie  209 (239)
                      ++||+ ..++..||+||+|+|.++|++||+|+||.|||++|||+|+||++||++||||+|+||++++|||+|+|++++|+
T Consensus         4 ~~np~~~~~~~~R~kmP~~~v~~eG~~KTvi~Nf~dI~~~L~R~p~~~~ky~~~ELgt~~~id~~~~lii~G~~~~~~i~   83 (125)
T PF01873_consen    4 EKNPERSNSDKFRYKMPPPQVKIEGKKKTVIVNFVDICKALNRDPEHVLKYFGKELGTQGSIDGKGRLIINGRFSSKQIQ   83 (125)
T ss_dssp             CSSTTTSCSSSSS-CCCT--EEEETSTEEEETTHHHHHHHHTSSHHHHHHHHHHHSSSEEEEETTTEEEEESSSSCCHHH
T ss_pred             HhCcCcccCCCcceecCCCeEEEEccceeeeecHHHHHHHHCCCHHHHHHHHHHHHCCceEECCCCEEEEEEecCHHHHH
Confidence            45799 45666799999999999997799999999999999999999999999999999999997899999999999999


Q ss_pred             HHHHHHHHhccccCCCCcCccC
Q 026382          210 GILRRYVSKYFLKSSFVLNIYK  231 (239)
Q Consensus       210 ~vL~kYI~eYVlC~~C~~~~~~  231 (239)
                      ++|++||++||+|++|..|.+.
T Consensus        84 ~~L~~fI~~yVlC~~C~spdT~  105 (125)
T PF01873_consen   84 DLLDKFIKEYVLCPECGSPDTE  105 (125)
T ss_dssp             HHHHHHHCHHSSCTSTSSSSEE
T ss_pred             HHHHHHHHHEEEcCCCCCCccE
Confidence            9999999999999999999874

Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....

>COG1601 GCD7 Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=1.4e-32  Score=231.09  Aligned_cols=114  Identities=34%  Similarity=0.634  Sum_probs=107.2

Q ss_pred             CCCccHHHHHHHHHHHHHhcCCCcccccc-ccccCCCeEEEeCceeeEEeehHHHHHHhCCChHHHHHHHHHhhcCceee
Q 026382          113 DRDYEYEELLGRVFNILRENNPELAGDRR-RTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSL  191 (239)
Q Consensus       113 ~~~y~YeeLL~R~~~~L~~~nPd~~~~~~-Rf~mP~p~V~reG~kKTvi~NF~eI~k~L~R~peHv~kfl~~ELGT~gsi  191 (239)
                      ...+.|++||+|+|..+    |+..+... ||.||+|.|.++|+ +|+|.||.+||++|||+|+|+++||.+||||+|++
T Consensus         3 ~~~~~yeelLeR~~~~l----P~~~~~~~~R~~ip~~~i~~~g~-~Ti~~Nf~dia~~l~rDp~h~~k~l~kel~t~g~~   77 (151)
T COG1601           3 EMEDDYEELLERAYSEL----PEKEVKNDERFRIPEPEINREGN-RTIIRNFGDIAEALNRDPEHLVKFLKKELGTAGSI   77 (151)
T ss_pred             hhhhhHHHHHHHHHHhC----CccccccccceecCCcceecccc-hhHHHhHHHHHHHhcCCHHHHHHHHHHHhcccccc
Confidence            34678999999999777    99877655 99999999999997 99999999999999999999999999999999999


Q ss_pred             cCCceEEEEeecChHHHHHHHHHHHHhccccCCCCcCccC
Q 026382          192 DGQQRLVVKGRFAPKNFEGILRRYVSKYFLKSSFVLNIYK  231 (239)
Q Consensus       192 dg~~rLII~Grf~~k~Ie~vL~kYI~eYVlC~~C~~~~~~  231 (239)
                      ++.++|||+|+|+++.|++.|++||..||.|+.|.-+++.
T Consensus        78 d~~~rlvl~g~f~~~~i~~~i~~yi~~yv~C~~c~s~dt~  117 (151)
T COG1601          78 DGKGRLVLQGKFSDSEIVNEIERYIAEYVKCKECGSPDTE  117 (151)
T ss_pred             CCcceEEEEecccHHHHHHHHHHHHHheeEeccCCCCchh
Confidence            9988999999999999999999999999999999998875

>KOG2767 consensus Translation initiation factor 5 (eIF-5) [Translation, ribosomal structure and biogenesis]

Probab=99.92  E-value=3.5e-26  Score=213.02  Aligned_cols=95  Identities=25%  Similarity=0.341  Sum_probs=90.1

Q ss_pred             cccccccCCCeEEEeC---ceeeEEeehHHHHHHhCCChHHHHHHHHHhhcCceeecC-CceEEEEeecChHHHHHHHHH
Q 026382          139 DRRRTVMRPPQVLREG---TKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDG-QQRLVVKGRFAPKNFEGILRR  214 (239)
Q Consensus       139 ~~~Rf~mP~p~V~reG---~kKTvi~NF~eI~k~L~R~peHv~kfl~~ELGT~gsidg-~~rLII~Grf~~k~Ie~vL~k  214 (239)
                      .-|||+||+++...||   ++||+|+|+.|||++|+|+|-|+++||++|||++++||. ++|+++||.|.+..||++|+.
T Consensus        12 ~FYRYKMPrl~aKvEGKGNGIKTvIvNm~eIakAL~RPp~Y~tKyFGcELGAQT~fd~kn~ryiVNG~Hd~~KLqdlLdg   91 (400)
T KOG2767|consen   12 PFYRYKMPRLQAKVEGKGNGIKTVIVNMVEIAKALGRPPLYPTKYFGCELGAQTKFDVKNGRYIVNGAHEASKLQDLLDG   91 (400)
T ss_pred             hhhhhccchhhhhccccCCCeeeeeecHHHHHHHhCCCCCcccccceeeccccccccccCCeeeecccccHHHHHHHHHH
Confidence            3689999999999998   499999999999999999999999999999999999986 789999999999999999999


Q ss_pred             HHHhccccCCCCcCccCce
Q 026382          215 YVSKYFLKSSFVLNIYKSV  233 (239)
Q Consensus       215 YI~eYVlC~~C~~~~~~~~  233 (239)
                      ||+.||+||+|+.|.+.-.
T Consensus        92 FIkKFVlC~~C~NPETel~  110 (400)
T KOG2767|consen   92 FIKKFVLCPSCENPETELI  110 (400)
T ss_pred             HHHHheeCcCCCCCceeEE
Confidence            9999999999999987543

>PF01253 SUI1: Translation initiation factor SUI1; InterPro: IPR001950 In Saccharomyces cerevisiae (Baker's yeast), SUI1 is a translation initiation factor that functions in concert with eIF-2 and the initiator tRNA-Met in directing the ribosome to the proper start site of translation []

Probab=94.32  E-value=0.13  Score=38.89  Aligned_cols=57  Identities=9%  Similarity=0.082  Sum_probs=41.8

Q ss_pred             eeeEEeehHHHHHHhCCChHHHHHHHHHhhcCceeec----CCceEEEEeecChHHHHHHHHHHH
Q 026382          156 KKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLD----GQQRLVVKGRFAPKNFEGILRRYV  216 (239)
Q Consensus       156 kKTvi~NF~eI~k~L~R~peHv~kfl~~ELGT~gsid----g~~rLII~Grf~~k~Ie~vL~kYI  216 (239)
                      .-|+|.||.    .-.=+++-+++.|...+|++|++.    .+..+.|+|.+...-.+-++.+|+
T Consensus        19 ~vT~V~gl~----~~~~d~~~lak~lkk~~ac~~sv~~~~~k~~~I~iQGd~~~~i~~~L~~~~~   79 (83)
T PF01253_consen   19 FVTIVSGLE----LFGIDLKELAKELKKKFACGGSVTKDPGKGEEIQIQGDHRDEIKDLLVEKGG   79 (83)
T ss_dssp             EEEEEES------STTSHHHHHHHHHHHHHTS-EEEEE-TTTSSEEEEESS-HHHHHHHHHHHCS
T ss_pred             EEEEEECCc----ccccCHHHHHHHHHHhccCceEEeecCCCCCEEEECCcHHHHHHHHHHHhCC
Confidence            558899998    344578999999999999999992    245799999998887766666663

SUI1 is a protein of 108 residues. Close homologs of SUI1 have been found [] in mammals, insects and plants. SUI1 is also evolutionary related to hypothetical proteins from Escherichia coli (yciH), Haemophilus influenzae (HI1225) and Methanococcus vannielii.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2OGH_A 1D1R_A 2IF1_A 2XZN_F 2XZM_F.

>PRK00939 translation initiation factor Sui1; Reviewed

Probab=90.85  E-value=0.39  Score=38.24  Aligned_cols=51  Identities=14%  Similarity=0.165  Sum_probs=40.2

Q ss_pred             eCceeeEEeehHHHHHHhCCChHHHHHHHHHhhcCceeecCCceEEEEeecChHHH
Q 026382          153 EGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNF  208 (239)
Q Consensus       153 eG~kKTvi~NF~eI~k~L~R~peHv~kfl~~ELGT~gsidg~~rLII~Grf~~k~I  208 (239)
                      -|+.-|+|.||..-.    =++.-+++.|.+.+|+.|++.+ +.+.|+|-+.....
T Consensus        35 ~gK~VTiI~Gl~~~~----~~lk~l~k~lKk~~gcGgsvk~-~~I~iQGD~r~~v~   85 (99)
T PRK00939         35 YGKEVTIIEGIDPKD----IDLKELAKKLKSKLACGGTVKD-GRIELQGDHRERVK   85 (99)
T ss_pred             CCceEEEEeCCCCcc----hhHHHHHHHHHHHhCCCceEEC-CEEEEeCcHHHHHH
Confidence            355679999996422    2478899999999999999974 47999999876554

>cd00474 SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation factor 1) fold is found in eukaryotes, archaea, and some bacteria and is thought to play an important role in accurate initiator codon recognition during translation initiation

Probab=90.18  E-value=0.51  Score=35.84  Aligned_cols=53  Identities=13%  Similarity=0.076  Sum_probs=41.8

Q ss_pred             CceeeEEeehHHHHHHhCCChHHHHHHHHHhhcCceeecCCceEEEEeecChHHHHHH
Q 026382          154 GTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGI  211 (239)
Q Consensus       154 G~kKTvi~NF~eI~k~L~R~peHv~kfl~~ELGT~gsidg~~rLII~Grf~~k~Ie~v  211 (239)
                      |+.-|+|.+|..-..    +++-+++.|.+.+|++|++.. +.+.|+|-+.....+-+
T Consensus        12 ~K~VT~I~Gl~~~~~----dlk~l~k~lKk~~~cggtv~~-~~I~lQGD~r~~v~~~L   64 (77)
T cd00474          12 GKTVTTVQGLDLEYA----DLKKLAKELKKKCACGGTVKD-EVIELQGDQRKKIKEFL   64 (77)
T ss_pred             CccEEEEECCCCchH----hHHHHHHHHHHHcCCCcEEec-CEEEEeCcHHHHHHHHH
Confidence            445789999974332    689999999999999999975 59999998876655433

This fold, which includes two antiparallel alpha helices packed against the same side of a five-strand beta sheet, is structurally similar to other RNA-binding domains suggesting that SUI1/eIF1 may bind RNA. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown.

>TIGR01158 SUI1_rel translation initation factor SUI1, putative, prokaryotic

Probab=88.18  E-value=0.95  Score=36.01  Aligned_cols=52  Identities=13%  Similarity=0.156  Sum_probs=40.9

Q ss_pred             EeCceeeEEeehHHHHHHhCCChHHHHHHHHHhhcCceeecCCceEEEEeecChHHH
Q 026382          152 REGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNF  208 (239)
Q Consensus       152 reG~kKTvi~NF~eI~k~L~R~peHv~kfl~~ELGT~gsidg~~rLII~Grf~~k~I  208 (239)
                      |-|+.-|+|.||..-.    -+++-++++|.+.+|+.|++. ++.+.|+|-|.....
T Consensus        35 r~gK~VTvV~Gl~~~~----~~l~~l~k~LKk~~gcGgtvk-~~~IeiQGD~~~~v~   86 (101)
T TIGR01158        35 RKGKGVTIIEGLDLSD----IDLKELAKELKSKCGCGGTVK-DGVIEIQGDHRDRVK   86 (101)
T ss_pred             CCCCEEEEEeCCcCch----hhHHHHHHHHHHHhcCCeeEe-CCEEEEeCcHHHHHH
Confidence            3456779999996322    257889999999999999997 458999999876544

This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met.

>TIGR01159 DRP1 density-regulated protein DRP1

Probab=86.32  E-value=2  Score=37.53  Aligned_cols=56  Identities=14%  Similarity=0.204  Sum_probs=46.0

Q ss_pred             eeeEEeehHHHHHHhCCChHHHHHHHHHhhcCceee----cCCceEEEEeecChHHHHHHHHHH
Q 026382          156 KKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSL----DGQQRLVVKGRFAPKNFEGILRRY  215 (239)
Q Consensus       156 kKTvi~NF~eI~k~L~R~peHv~kfl~~ELGT~gsi----dg~~rLII~Grf~~k~Ie~vL~kY  215 (239)
                      .-|+|.+|...    .-++.-++++|..-+||+||+    .+++.++|+|-|....++=++.+|
T Consensus       103 ~VT~V~GLe~f----~idlk~laK~lkkkfacG~SV~k~~~~~~eI~IQGD~~~~v~e~L~~~~  162 (173)
T TIGR01159       103 FVTVIKGLETF----DIDLKKASKTFAQKFATGCSVSKSVTGKEEIVIQGDVMDDIEDYIHEKW  162 (173)
T ss_pred             eEEEEeCCcCC----CcCHHHHHHHHHHHhCCCCccccCCCCCCEEEecCCHHHHHHHHHHHHc
Confidence            46899999753    457899999999999999877    246799999999988887777766

This protein family shows weak but suggestive similarity to translation initiation factor SUI1 and its prokaryotic homologs.

>COG0023 SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]

Probab=82.49  E-value=3.6  Score=33.34  Aligned_cols=58  Identities=14%  Similarity=0.172  Sum_probs=45.8

Q ss_pred             EEeCceeeEEeehHHHHHHhCCChHHHHHHHHHhhcCceeecCCceEEEEeecChHHHHHHHH
Q 026382          151 LREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILR  213 (239)
Q Consensus       151 ~reG~kKTvi~NF~eI~k~L~R~peHv~kfl~~ELGT~gsidg~~rLII~Grf~~k~Ie~vL~  213 (239)
                      .|-|+--|+|.+|..    -.-+++.+++.|-+-+|+.|++-.+ ...|+|-|..+..+=++.
T Consensus        36 rr~gK~VTiI~Gld~----~~~dlk~Lak~LKk~cacGGtvk~~-~IeiQGdhr~~v~~~L~~   93 (104)
T COG0023          36 RRKGKTVTIIEGLDL----KDIDLKKLAKELKKKCACGGTVKDG-EIEIQGDHRDKVKELLIK   93 (104)
T ss_pred             ecCCcEEEEEeCccc----chhhHHHHHHHHHHHcCCCceecCC-EEEEeChHHHHHHHHHHH
Confidence            355767899999986    2345789999999999999999744 999999998876654443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	239
2d74_B	148	Crystal Structure Of Translation Initiation Factor		2e-11
2nxu_A	146	Atomic Structure Of Translation Initiation Factor A		2e-07
2qmu_C	138	Structure Of An Archaeal Heterotrimeric Initiation		2e-07
3cw2_K	139	Crystal Structure Of The Intact Archaeal Translatio		2e-07
1nee_A	138	Structure Of Archaeal Translation Factor Aif2beta F		7e-07

>pdb|2D74|B Chain B, Crystal Structure Of Translation Initiation Factor Aif2betagamma Heterodimer Length = 148

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 63/106 (59%), Gaps = 5/106 (4%)
Query: 116 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPD 175
           Y+YE+LL + +  L EN   +   + R  +    V  EG K T+  NF D+   ++R P 
Sbjct: 6   YDYEKLLEKAYQELPEN---VKHHKSRFEVPGALVTIEGNK-TIIENFKDIADALNRDPQ 61
Query: 176 HVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVSKYFL 221
           H++ FLL E+ T+G+L+G +R+V++GRF P      L++Y+ +Y +
Sbjct: 62  HLLKFLLREIATAGTLEG-RRVVLQGRFTPYLIANKLKKYIKEYVI 106

>pdb|2NXU|A Chain A, Atomic Structure Of Translation Initiation Factor Aif2 Beta-Subunit From Archaebacteria Sulfolobus Solfataricus: High Resolution Nmr In Solution Length = 146

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 117 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDH 176
           EY E+L R+++ L E      G +  T   P  ++      T+  NF + C  + R+   
Sbjct: 13  EYVEMLDRLYSKLPEK-----GRKEGTQSLPNMIILNIGNTTIIRNFAEYCDRIRREDKI 67
Query: 177 VMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVSKY 219
            M +LL EL   G++D +  LV++G+F+ +    ++ R++  Y
Sbjct: 68  CMKYLLKELAAPGNVDDKGELVIQGKFSSQVINTLMERFLKAY 110

>pdb|2QMU|C Chain C, Structure Of An Archaeal Heterotrimeric Initiation Factor 2 Reveals A Nucleotide State Between The Gtp And The Gdp States Length = 138

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 117 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDH 176
           EY E+L R+++ L E      G +  T   P  ++      T+  NF + C  + R+   
Sbjct: 5   EYVEMLDRLYSKLPEK-----GRKEGTQSLPNMIILNIGNTTIIRNFAEYCDRIRREDKI 59
Query: 177 VMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVSKY 219
            M +LL EL   G++D +  LV++G+F+ +    ++ R++  Y
Sbjct: 60  CMKYLLKELAAPGNVDDKGELVIQGKFSSQVINTLMERFLKAY 102

>pdb|3CW2|K Chain K, Crystal Structure Of The Intact Archaeal Translation Initiation Factor 2 From Sulfolobus Solfataricus . Length = 139

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 117 EYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDH 176
           EY E+L R+++ L E      G +  T   P  ++      T+  NF + C  + R+   
Sbjct: 6   EYVEMLDRLYSKLPEK-----GRKEGTQSLPNMIILNIGNTTIIRNFAEYCDRIRREDKI 60
Query: 177 VMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVSKY 219
            M +LL EL   G++D +  LV++G+F+ +    ++ R++  Y
Sbjct: 61  CMKYLLKELAAPGNVDDKGELVIQGKFSSQVINTLMERFLKAY 103

>pdb|1NEE|A Chain A, Structure Of Archaeal Translation Factor Aif2beta From Methanobacterium Thermoautrophicum Length = 138

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 7/111 (6%)
Query: 111 GSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTM 170
           GS  D +YE+LL R  + L    PE+   +R  V +   V++    +T   NF ++   +
Sbjct: 1   GSHMD-DYEKLLERAIDQL---PPEVFETKRFEVPKAYSVIQ--GNRTFIQNFREVADAL 54
Query: 171 HRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVSKYFL 221
           +R P H++ FLL ELGT+G+L+G  R +++G+F        +  YV+K+ +
Sbjct: 55  NRDPQHLLKFLLRELGTAGNLEG-GRAILQGKFTHFLINERIEDYVNKFVI 104

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	239
3cw2_K	139	Translation initiation factor 2 subunit beta; AIF2	3e-39
2d74_B	148	Translation initiation factor 2 beta subunit; prot	4e-35
1nee_A	138	EIF-2-beta, probable translation initiation factor	4e-35
2e9h_A	157	EIF-5, eukaryotic translation initiation factor 5;	1e-27
2g2k_A	170	EIF-5, eukaryotic translation initiation factor 5;	3e-25
1k8b_A	52	EIF-2-beta, probable translation initiation factor	1e-23

>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C* Length = 139

 Score =  132 bits (332), Expect = 3e-39
 Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 5/107 (4%)

Query: 113 DRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHR 172
             + EY E+L R+++ L E        +  T   P  ++      T+  NF + C  + R
Sbjct: 2   SSEKEYVEMLDRLYSKLPEKG-----RKEGTQSLPNMIILNIGNTTIIRNFAEYCDRIRR 56

Query: 173 QPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVSKY 219
           +    M +LL EL   G++D +  LV++G+F+ +    ++ R++  Y
Sbjct: 57  EDKICMKYLLKELAAPGNVDDKGELVIQGKFSSQVINTLMERFLKAY 103

>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B* Length = 148

 Score =  121 bits (305), Expect = 4e-35
 Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 5/108 (4%)

Query: 114 RDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQ 173
             Y+YE+LL + +  L EN       + R  +    V  EG  KT+  NF D+   ++R 
Sbjct: 4   DYYDYEKLLEKAYQELPENVK---HHKSRFEVPGALVTIEG-NKTIIENFKDIADALNRD 59

Query: 174 PDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVSKYFL 221
           P H++ FLL E+ T+G+L+G +R+V++GRF P      L++Y+ +Y +
Sbjct: 60  PQHLLKFLLREIATAGTLEG-RRVVLQGRFTPYLIANKLKKYIKEYVI 106

>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1 Length = 138

 Score =  121 bits (304), Expect = 4e-35
 Identities = 34/111 (30%), Positives = 59/111 (53%), Gaps = 7/111 (6%)

Query: 111 GSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTM 170
           GS  D  YE+LL R  + L    P    + +R  +     + +G  +T   NF ++   +
Sbjct: 1   GSHMDD-YEKLLERAIDQL----PPEVFETKRFEVPKAYSVIQG-NRTFIQNFREVADAL 54

Query: 171 HRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVSKYFL 221
           +R P H++ FLL ELGT+G+L+G  R +++G+F        +  YV+K+ +
Sbjct: 55  NRDPQHLLKFLLRELGTAGNLEG-GRAILQGKFTHFLINERIEDYVNKFVI 104

>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 157

 Score =  102 bits (256), Expect = 1e-27
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 4/94 (4%)

Query: 132 NNPELAGDRRRTVMRPPQVLREGTK---KTVFVNFMDLCKTMHRQPDHVMTFLLAELGTS 188
            N  ++    R  M       EG     KTV VN +D+ K ++R P +   +   ELG  
Sbjct: 12  VNRSVSDQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQ 71

Query: 189 GSLD-GQQRLVVKGRFAPKNFEGILRRYVSKYFL 221
              D    R +V G       + +L  ++ K+ L
Sbjct: 72  TQFDVKNDRYIVNGSHEANKLQDMLDGFIKKFVL 105

>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens} Length = 170

 Score = 96.7 bits (240), Expect = 3e-25
 Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 5/98 (5%)

Query: 129 LRENNPELAGD-RRRTVMRPPQVLREGTK---KTVFVNFMDLCKTMHRQPDHVMTFLLAE 184
           L  N      D   R  M       EG     KTV VN +D+ K ++R P +   +   E
Sbjct: 1   LSVNVNRSVMDQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCE 60

Query: 185 LGTSGSLD-GQQRLVVKGRFAPKNFEGILRRYVSKYFL 221
           LG     D    R +V G       + +L  ++ K+ L
Sbjct: 61  LGAQTQFDVKNDRYIVNGSHEANKLQDMLDGFIKKFVL 98

>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1 Length = 52

 Score = 88.6 bits (220), Expect = 1e-23
 Identities = 19/54 (35%), Positives = 35/54 (64%), Gaps = 2/54 (3%)

Query: 149 QVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGR 202
           ++L EG  +T+  NF +L K ++R  +    +LL E G++G+L+G  RL+++ R
Sbjct: 1   EILIEG-NRTIIRNFRELAKAVNRDEEFFAKYLLKETGSAGNLEG-GRLILQRR 52

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	239
2d74_B	148	Translation initiation factor 2 beta subunit; prot	100.0
1nee_A	138	EIF-2-beta, probable translation initiation factor	100.0
3cw2_K	139	Translation initiation factor 2 subunit beta; AIF2	100.0
2e9h_A	157	EIF-5, eukaryotic translation initiation factor 5;	100.0
2g2k_A	170	EIF-5, eukaryotic translation initiation factor 5;	100.0
1k8b_A	52	EIF-2-beta, probable translation initiation factor	99.89
2ogh_A	108	Eukaryotic translation initiation factor EIF-1; al	89.29
4h62_V	31	Mediator of RNA polymerase II transcription subun;	81.45

>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*

Probab=100.00  E-value=1.6e-43  Score=295.32  Aligned_cols=112  Identities=33%  Similarity=0.604  Sum_probs=107.2

Q ss_pred             CccHHHHHHHHHHHHHhcCCCcc-ccccccccCCCeEEEeCceeeEEeehHHHHHHhCCChHHHHHHHHHhhcCceeecC
Q 026382          115 DYEYEELLGRVFNILRENNPELA-GDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDG  193 (239)
Q Consensus       115 ~y~YeeLL~R~~~~L~~~nPd~~-~~~~Rf~mP~p~V~reG~kKTvi~NF~eI~k~L~R~peHv~kfl~~ELGT~gsidg  193 (239)
                      .|+|++||+|||++|    |+.+ ++.+||+||+|+|.++|+ ||+|+||.+||++|||+|+||++||++||||+|+|| 
T Consensus         5 ~~~Y~~LL~R~~~~l----p~~~~~~~~RykmP~~~v~~eGk-KTvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id-   78 (148)
T 2d74_B            5 YYDYEKLLEKAYQEL----PENVKHHKSRFEVPGALVTIEGN-KTIIENFKDIADALNRDPQHLLKFLLREIATAGTLE-   78 (148)
T ss_dssp             TTCHHHHHHTTTSSS----CHHHHSSSCCCCCCCCCEEEETT-EEEESCHHHHHHHHTCCSHHHHHHHHHHSCCCEEEE-
T ss_pred             cccHHHHHHHHHHHC----ccccCCCCCceecCCCeEEEecC-eEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec-
Confidence            578999999999999    8877 778999999999999996 999999999999999999999999999999999999 


Q ss_pred             CceEEEEeecChHHHHHHHHHHHHhccccCCCCcCccCc
Q 026382          194 QQRLVVKGRFAPKNFEGILRRYVSKYFLKSSFVLNIYKS  232 (239)
Q Consensus       194 ~~rLII~Grf~~k~Ie~vL~kYI~eYVlC~~C~~~~~~~  232 (239)
                      ++||||||+|++++|+++|++||++||+|++|..|.+.=
T Consensus        79 ~~rlii~G~~~~~~i~~~L~~yI~~yVlC~~C~sPdT~L  117 (148)
T 2d74_B           79 GRRVVLQGRFTPYLIANKLKKYIKEYVICPVCGSPDTKI  117 (148)
T ss_dssp             TTEEEESSCCCHHHHHHHHHHHHHHHSSCSSSCCTTCCC
T ss_pred             CCEEEEEeeeCHHHHHHHHHHHHHHEEECCCCCCcCcEE
Confidence            789999999999999999999999999999999998753

>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1

Probab=100.00  E-value=1.7e-44  Score=298.09  Aligned_cols=113  Identities=27%  Similarity=0.486  Sum_probs=106.8

Q ss_pred             CccHHHHHHHHHHHHHhcCCCccccccccccCCCeEEEeCceeeEEeehHHHHHHhCCChHHHHHHHHHhhcCceeecCC
Q 026382          115 DYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQ  194 (239)
Q Consensus       115 ~y~YeeLL~R~~~~L~~~nPd~~~~~~Rf~mP~p~V~reG~kKTvi~NF~eI~k~L~R~peHv~kfl~~ELGT~gsidg~  194 (239)
                      +|+|++||+|||++|    |+..++.+||+||+|+|.++|+ ||+|+||.+||++|||+|+||++||++||||+|++| +
T Consensus         4 ~~~Y~~lL~R~~~~l----~~~~~~~~R~~mp~~~v~~eG~-kTvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id-~   77 (138)
T 1nee_A            4 MDDYEKLLERAIDQL----PPEVFETKRFEVPKAYSVIQGN-RTFIQNFREVADALNRDPQHLLKFLLRELGTAGNLE-G   77 (138)
T ss_dssp             CCSSCCCCCSSSSSS----CTTSCCCCCCCCSCCCCCEETT-EEEESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCCB-T
T ss_pred             ccCHHHHHHHHHHHc----ccccCCccceecCCCeEEEECC-cEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec-C
Confidence            688999999999999    5555778999999999999997 799999999999999999999999999999999999 8


Q ss_pred             ceEEEEeecChHHHHHHHHHHHHhccccCCCCcCccCce
Q 026382          195 QRLVVKGRFAPKNFEGILRRYVSKYFLKSSFVLNIYKSV  233 (239)
Q Consensus       195 ~rLII~Grf~~k~Ie~vL~kYI~eYVlC~~C~~~~~~~~  233 (239)
                      +||||||+|++++|+++|++||++||+|++|..|.+.=+
T Consensus        78 ~rlii~G~~~~~~i~~~L~~yI~~yVlC~~C~sPdT~l~  116 (138)
T 1nee_A           78 GRAILQGKFTHFLINERIEDYVNKFVICHECNRPDTRII  116 (138)
T ss_dssp             TTEEEESSCSSSHHHHHHHHHHTHHHHHTCCSSCSSCCE
T ss_pred             CEEEEEeeeCHHHHHHHHHHHHhhEEECCCCCCcCcEEE
Confidence            899999999999999999999999999999999988643

>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*

Probab=100.00  E-value=2.5e-44  Score=297.42  Aligned_cols=112  Identities=26%  Similarity=0.495  Sum_probs=106.6

Q ss_pred             CccHHHHHHHHHHHHHhcCCCccccccccccCCCeEEEeCceeeEEeehHHHHHHhCCChHHHHHHHHHhhcCceeecCC
Q 026382          115 DYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQ  194 (239)
Q Consensus       115 ~y~YeeLL~R~~~~L~~~nPd~~~~~~Rf~mP~p~V~reG~kKTvi~NF~eI~k~L~R~peHv~kfl~~ELGT~gsidg~  194 (239)
                      +|+|++||+|||++|    |+..++.+||+||+|+|.++|+ ||+|+||.+||++|||+|+||++||++||||+|++|++
T Consensus         4 ~~~Y~~lL~R~~~~l----~~~~~~~~R~kmp~~~v~~eG~-kTvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id~~   78 (139)
T 3cw2_K            4 EKEYVEMLDRLYSKL----PEKGRKEGTQSLPNMIILNIGN-TTIIRNFAEYCDRIRREDKICMKYLLKELAAPGNVDDK   78 (139)
T ss_dssp             SGGGHHHHTTTTTSS----TTSSSCSSCCSCCCCCCCCCSS-SCCCSCSSSTTTTTSSCCTTTHHHHSCCSSCCCCCSSS
T ss_pred             ccCHHHHHHHHHHHc----ccccCCccceecCCCeEEEECC-eEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceEECCC
Confidence            689999999999999    5544678999999999999998 79999999999999999999999999999999999988


Q ss_pred             ceEEEEeecChHHHHHHHHHHHHhccccCCCCcCccC
Q 026382          195 QRLVVKGRFAPKNFEGILRRYVSKYFLKSSFVLNIYK  231 (239)
Q Consensus       195 ~rLII~Grf~~k~Ie~vL~kYI~eYVlC~~C~~~~~~  231 (239)
                      +||||||+|++++|+++|++||++||+|++|..|.+.
T Consensus        79 ~rlii~G~~~~~~i~~~L~~yI~~yVlC~~C~sPdT~  115 (139)
T 3cw2_K           79 GELVIQGKFSSQVINTLMERFLKAYVECSTCKSLDTI  115 (139)
T ss_dssp             CCCTTTCSCCSCCSCSTTTTTSSCCSSCCSSSSSCCC
T ss_pred             CeEEEEeeeCHHHHHHHHHHHHHHeeECCCCCCcCcE
Confidence            8999999999999999999999999999999999875

>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=100.00  E-value=6.6e-37  Score=257.53  Aligned_cols=104  Identities=24%  Similarity=0.346  Sum_probs=95.2

Q ss_pred             HHHHHhcCCCccccccccccCCCeEEEeCc---eeeEEeehHHHHHHhCCChHHHHHHHHHhhcCceeec-CCceEEEEe
Q 026382          126 FNILRENNPELAGDRRRTVMRPPQVLREGT---KKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLD-GQQRLVVKG  201 (239)
Q Consensus       126 ~~~L~~~nPd~~~~~~Rf~mP~p~V~reG~---kKTvi~NF~eI~k~L~R~peHv~kfl~~ELGT~gsid-g~~rLII~G  201 (239)
                      +++++.++|.    -+||+||+|+|.++|+   +||+|+||.|||++|||+|+||++||++||||+|+|| +++||||+|
T Consensus        10 ~nI~r~~~d~----~~RykmP~~~v~~eG~gnG~KTvi~Nf~dIak~L~R~p~hv~ky~~~ELGt~g~id~~~~rlii~G   85 (157)
T 2e9h_A           10 VNVNRSVSDQ----FYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNG   85 (157)
T ss_dssp             EESSTTCCCS----CCCCEEECCCEEECSSSSSCEEEETTHHHHHHHTTSCTHHHHHHHHHHHTCCEEEETTTTEEEEEB
T ss_pred             EeccCCCCCc----ccceecCCCeEEEeccCCccEEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeecCCCCEEEEEe
Confidence            4556555554    4699999999999997   8999999999999999999999999999999999999 588999999


Q ss_pred             ecChHHHHHHHHHHHHhccccCCCCcCccCce
Q 026382          202 RFAPKNFEGILRRYVSKYFLKSSFVLNIYKSV  233 (239)
Q Consensus       202 rf~~k~Ie~vL~kYI~eYVlC~~C~~~~~~~~  233 (239)
                      +|++++||++|++||++||+|++|..|.+.=+
T Consensus        86 ~~~~~~i~~~L~~yI~~YVlC~~C~sPdT~L~  117 (157)
T 2e9h_A           86 SHEANKLQDMLDGFIKKFVLCPECENPETDLH  117 (157)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSCTTTCCSCCEEE
T ss_pred             eeCHHHHHHHHHHHHHHeEECCCCCCCccEEE
Confidence            99999999999999999999999999987544

>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}

Probab=100.00  E-value=1.3e-35  Score=252.32  Aligned_cols=95  Identities=24%  Similarity=0.344  Sum_probs=90.5

Q ss_pred             cccccccCCCeEEEeCc---eeeEEeehHHHHHHhCCChHHHHHHHHHhhcCceeecC-CceEEEEeecChHHHHHHHHH
Q 026382          139 DRRRTVMRPPQVLREGT---KKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDG-QQRLVVKGRFAPKNFEGILRR  214 (239)
Q Consensus       139 ~~~Rf~mP~p~V~reG~---kKTvi~NF~eI~k~L~R~peHv~kfl~~ELGT~gsidg-~~rLII~Grf~~k~Ie~vL~k  214 (239)
                      ..+||+||+|+|.++|+   +||+|+||.+||++|||+|+||++||++||||+|+||+ ++||||+|+|++++||++|++
T Consensus        12 ~~~RykmP~~~v~~EG~gnG~KTvi~Nf~dIak~L~R~p~hv~kyf~~ELGt~g~id~~~~rliinG~~~~~~i~~~L~~   91 (170)
T 2g2k_A           12 QFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANKLQDMLDG   91 (170)
T ss_dssp             CCSSCCCCCCCCEEESCTTTCEEECSSHHHHHHHHSSCCTTTHHHHHHHTTCCCEECTTTCCEEEEBCCCHHHHHHHHHH
T ss_pred             ccccccCCCCeEEEeccCCccEEEEEcHHHHHHHhCCCHHHHHHHHHHHhCCceeecCCCCEEEEEeeeCHHHHHHHHHH
Confidence            36799999999999996   79999999999999999999999999999999999997 889999999999999999999


Q ss_pred             HHHhccccCCCCcCccCce
Q 026382          215 YVSKYFLKSSFVLNIYKSV  233 (239)
Q Consensus       215 YI~eYVlC~~C~~~~~~~~  233 (239)
                      ||++||+|++|..|.+.=+
T Consensus        92 yI~~YVlC~~C~sPdT~L~  110 (170)
T 2g2k_A           92 FIKKFVLCPECENPETDLH  110 (170)
T ss_dssp             HHHHHHSCTTTSSSCEEEE
T ss_pred             HHHHeEECCCCCCCccEEE
Confidence            9999999999999987544

>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1

Probab=99.89  E-value=6e-24  Score=149.42  Aligned_cols=52  Identities=35%  Similarity=0.703  Sum_probs=50.0

Q ss_pred             eEEEeCceeeEEeehHHHHHHhCCChHHHHHHHHHhhcCceeecCCceEEEEee
Q 026382          149 QVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGR  202 (239)
Q Consensus       149 ~V~reG~kKTvi~NF~eI~k~L~R~peHv~kfl~~ELGT~gsidg~~rLII~Gr  202 (239)
                      +|.++|+ ||+|+||.|||++|||+|+||++||++||||+|++| ++||||+|+
T Consensus         1 ~v~~eG~-kTvi~Nf~~Ia~~L~R~p~hv~ky~~~ELGt~g~id-~~rlii~G~   52 (52)
T 1k8b_A            1 EILIEGN-RTIIRNFRELAKAVNRDEEFFAKYLLKETGSAGNLE-GGRLILQRR   52 (52)
T ss_dssp             CEEEETT-EEEECCHHHHHHHHHTCHHHHHHHHHHHHSSEEEEE-TTEEEEECC
T ss_pred             CcEEEcC-eEEEECHHHHHHHHCCCHHHHHHHHHHHhCCCeeec-CCEEEEeCC
Confidence            5899998 799999999999999999999999999999999999 789999996

>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae}

Probab=89.29  E-value=0.94  Score=35.27  Aligned_cols=57  Identities=11%  Similarity=0.165  Sum_probs=46.0

Q ss_pred             ceeeEEeehHHHHHHhCCChHHHHHHHHHhhcCceeecCC----ceEEEEeecChHHHHHHHHHHH
Q 026382          155 TKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQ----QRLVVKGRFAPKNFEGILRRYV  216 (239)
Q Consensus       155 ~kKTvi~NF~eI~k~L~R~peHv~kfl~~ELGT~gsidg~----~rLII~Grf~~k~Ie~vL~kYI  216 (239)
                      +.-|+|.+|..     .-+++-+++.|.+.+|++|++-.+    ..+.|+|-+.....+-++.+++
T Consensus        37 K~VT~V~Gl~~-----~~dlk~lak~lKkk~acggsV~~~~~~g~~I~iQGD~r~~v~~~L~~~g~   97 (108)
T 2ogh_A           37 KTLTTVQGVPE-----EYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQRAKVCEFMISQLG   97 (108)
T ss_dssp             CCEEEEECCCT-----TSCHHHHHHHHHHHHCCCEEEECCTTSSCEEEEESSCHHHHHHHHHHHHT
T ss_pred             ceEEEEeCCCc-----chhHHHHHHHHHHHhcCceEEecCCCCceEEEEcCCHHHHHHHHHHHcCC
Confidence            35688999962     448999999999999999999422    3899999999887777777654

>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}

Probab=81.45  E-value=0.83  Score=28.14  Aligned_cols=21  Identities=24%  Similarity=0.496  Sum_probs=17.2

Q ss_pred             eecChHHHHHHHHHHHHhccc
Q 026382          201 GRFAPKNFEGILRRYVSKYFL  221 (239)
Q Consensus       201 Grf~~k~Ie~vL~kYI~eYVl  221 (239)
                      -||..++|+.+|++-|+.||.
T Consensus         7 trfdekqieelldncietfva   27 (31)
T 4h62_V            7 TRFDEKQIEELLDNCIETFVA   27 (31)
T ss_dssp             ---CHHHHHHHHHHHHHHHHT
T ss_pred             ccccHHHHHHHHHHHHHHHHh
Confidence            389999999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	239
d1neea1	98	d.241.1.1 (A:1-98) Translation initiation factor 2	2e-35
d1k8ba_	52	d.241.1.1 (A:) Translation initiation factor 2 bet	3e-22

>d1neea1 d.241.1.1 (A:1-98) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 98

class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
family: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
domain: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score =  119 bits (300), Expect = 2e-35
 Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 6/103 (5%)

Query: 116 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPD 175
            +YE+LL R  + L    P    + +R  +     + +G  +T   NF ++   ++R P 
Sbjct: 2   DDYEKLLERAIDQL----PPEVFETKRFEVPKAYSVIQG-NRTFIQNFREVADALNRDPQ 56

Query: 176 HVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVSK 218
           H++ FLL ELGT+G+L+G  R +++G+F        +  YV+K
Sbjct: 57  HLLKFLLRELGTAGNLEG-GRAILQGKFTHFLINERIEDYVNK 98

>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 52

class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
family: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
domain: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 83.9 bits (208), Expect = 3e-22
 Identities = 19/54 (35%), Positives = 35/54 (64%), Gaps = 2/54 (3%)

Query: 149 QVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGR 202
           ++L EG  +T+  NF +L K ++R  +    +LL E G++G+L+G  RL+++ R
Sbjct: 1   EILIEG-NRTIIRNFRELAKAVNRDEEFFAKYLLKETGSAGNLEG-GRLILQRR 52

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	239
d1neea1	98	Translation initiation factor 2 beta, aIF2beta, N-	100.0
d1k8ba_	52	Translation initiation factor 2 beta, aIF2beta, N-	99.88
d1d1ra_	83	YciH {Escherichia coli [TaxId: 562]}	86.53
d1neea2	37	Zinc-binding domain of translation initiation fact	81.85

>d1neea1 d.241.1.1 (A:1-98) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
family: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
domain: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=100.00  E-value=6.4e-37  Score=237.72  Aligned_cols=97  Identities=32%  Similarity=0.611  Sum_probs=91.6

Q ss_pred             ccHHHHHHHHHHHHHhcCCCccccccccccCCCeEEEeCceeeEEeehHHHHHHhCCChHHHHHHHHHhhcCceeecCCc
Q 026382          116 YEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQ  195 (239)
Q Consensus       116 y~YeeLL~R~~~~L~~~nPd~~~~~~Rf~mP~p~V~reG~kKTvi~NF~eI~k~L~R~peHv~kfl~~ELGT~gsidg~~  195 (239)
                      .+|++||+|||+.|    |+...+..||+||+|+|.++|+ ||+|.||.+||++|||+|+||++||++||||+|++++ +
T Consensus         2 ~~Y~~LL~R~~~~l----~~~~~~~~R~~mP~~~v~~eGk-kTii~Nf~~Ia~~L~R~p~hl~kfl~~ELgt~g~i~~-~   75 (98)
T d1neea1           2 DDYEKLLERAIDQL----PPEVFETKRFEVPKAYSVIQGN-RTFIQNFREVADALNRDPQHLLKFLLRELGTAGNLEG-G   75 (98)
T ss_dssp             CSSCCCCCSSSSSS----CTTSCCCCCCCCSCCCCCEETT-EEEESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCCBT-T
T ss_pred             ccHHHHHHHHHHHC----CcccCCCcceecCCceEEEecc-eEEEechHHHHHHHCCCHHHHHHHHHHHhCCceEEeC-C
Confidence            46999999999999    7766777899999999999996 9999999999999999999999999999999999985 6


Q ss_pred             eEEEEeecChHHHHHHHHHHHHh
Q 026382          196 RLVVKGRFAPKNFEGILRRYVSK  218 (239)
Q Consensus       196 rLII~Grf~~k~Ie~vL~kYI~e  218 (239)
                      +|||+|+|++++|+++|++||++
T Consensus        76 ~lii~G~~~~~~i~~~l~~yI~e   98 (98)
T d1neea1          76 RAILQGKFTHFLINERIEDYVNK   98 (98)
T ss_dssp             TEEEESSCSSSHHHHHHHHHHTH
T ss_pred             EEEEEeeeCHHHHHHHHHHHhcC
Confidence            99999999999999999999975

>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
family: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
domain: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.88  E-value=8.9e-24  Score=146.84  Aligned_cols=52  Identities=37%  Similarity=0.752  Sum_probs=49.6

Q ss_pred             eEEEeCceeeEEeehHHHHHHhCCChHHHHHHHHHhhcCceeecCCceEEEEee
Q 026382          149 QVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGR  202 (239)
Q Consensus       149 ~V~reG~kKTvi~NF~eI~k~L~R~peHv~kfl~~ELGT~gsidg~~rLII~Gr  202 (239)
                      +|.+||+ ||+|.||.+||++|||+|+||++||++||||+|++++ +||||+||
T Consensus         1 ~v~~EGk-kTvi~Nf~eI~~~L~R~p~hv~kfl~~ELgt~g~~~~-~rlii~Gr   52 (52)
T d1k8ba_           1 EILIEGN-RTIIRNFRELAKAVNRDEEFFAKYLLKETGSAGNLEG-GRLILQRR   52 (52)
T ss_dssp             CEEEETT-EEEECCHHHHHHHHHTCHHHHHHHHHHHHSSEEEEET-TEEEEECC
T ss_pred             CceEecc-eEeeecHHHHHHHhCCCHHHHHHHHHHHhCCceeeeC-CEEEEeCC
Confidence            5899995 9999999999999999999999999999999999985 69999997

>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: eIF1-like
superfamily: eIF1-like
family: eIF1-like
domain: YciH
species: Escherichia coli [TaxId: 562]

Probab=86.53  E-value=0.11  Score=37.06  Aligned_cols=54  Identities=7%  Similarity=-0.046  Sum_probs=41.0

Q ss_pred             ceeeEEeehHHHHHHhCCChHHHHHHHHHhhcCceeecCCceEEEEeecChHHHHHHHH
Q 026382          155 TKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILR  213 (239)
Q Consensus       155 ~kKTvi~NF~eI~k~L~R~peHv~kfl~~ELGT~gsidg~~rLII~Grf~~k~Ie~vL~  213 (239)
                      ..-|+|.||.--..    ++..+++.|.+.+|+.||+.+ +.+.|+|-+..+..+=+..
T Consensus        18 K~VT~I~Gl~~~~~----dlk~l~k~lKk~~gcGgsvk~-~~I~lQGd~~~~v~~~L~~   71 (83)
T d1d1ra_          18 KGVCLITGVDLDDA----ELTKLAAELKKKCGCGGAVKD-GVIEIQGDKRDLLKSLLEA   71 (83)
T ss_dssp             CCCEEEECCCSCHH----HHHHHHHHHTTSSSSCCBCCS-SCEEECSCCHHHHHHHHHH
T ss_pred             CeEEEEECCcCCHH----HHHHHHHHHHHHhcCCEEEEC-CEEEEeCcHHHHHHHHHHH
Confidence            34599999973222    368899999999999999974 4899999988766544433

>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Small proteins
fold: Zinc-binding domain of translation initiation factor 2 beta
superfamily: Zinc-binding domain of translation initiation factor 2 beta
family: Zinc-binding domain of translation initiation factor 2 beta
domain: Zinc-binding domain of translation initiation factor 2 beta
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=81.85  E-value=0.15  Score=31.63  Aligned_cols=13  Identities=0%  Similarity=-0.097  Sum_probs=11.8

Q ss_pred             ccccCCCCcCccC
Q 026382          219 YFLKSSFVLNIYK  231 (239)
Q Consensus       219 YVlC~~C~~~~~~  231 (239)
                      ||+|+.|..|.+.
T Consensus         1 YV~C~~C~spDT~   13 (37)
T d1neea2           1 FVICHECNRPDTR   13 (37)
T ss_dssp             HHHHTCCSSCSSC
T ss_pred             CeECCCCCCCCCE
Confidence            8999999999875