Citrus Sinensis ID: 026383

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
MVSATFMKIVSPCWKPSTEGENSNSDGEDNGRVDGLLWYKDSGHHVSGEFSMAVVQANNQLEDCSQLESGPLSSLESGPQGTFVGIYDGHGGPEAARFVNDHLFDNIKTIHGAEFTSESCGISADVITRAFLETEEEFLSLVRNQWLNKPQIASAGSCCLVGIICSGLLYIANAGDSRVVLGRMENDVKEVKAVQLSSEHNASMEFVREELRALHPDDPQIVVLKHKVWRVKGIIQVTI
ccHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccEEcccccccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEEccEEEEEEccccEEEEEEEEcccccEEEEEcccccccccHHHHHHHHHHcccccccEEEEcccEEEEEEEEEcc
cHHHHHHHHHHHHccccccccccccccccccccccEEEEccccccccccEEEEEEEcccccccHHHccccccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHcccccHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHcccccEEEEEEEEccEEEEEEcccccEEEEcccccccEEEEEEcccccccccHHHHHHHHHHccccccEEEEEccEEEEEEEEEEEc
MVSATFMKIvspcwkpstegensnsdgedngrvdgllwykdsghhvsgEFSMAVVQANnqledcsqlesgplsslesgpqgtfvgiydghggpeaaRFVNDHLFDniktihgaeftsescgisADVITRAFLETEEEFLSLVRNQwlnkpqiasagsccLVGIICSGLLYIANAGDSRVVLGRMENDVKEVKAVQLSSEHNASMEFVREELralhpddpqivVLKHKVWRVKGIIQVTI
mvsatfmkivspcwkpstegensnsdgedNGRVDGLLWYKDSGHHVSGEFSMAVVQANNQLEDCSQLESGPLSSLESGPQGTFVGIYDGHGGPEAARFVNDHLFDNIKTIHgaeftsescgISADVITRAFLETEEEFLSLVRNQWLNKPQIASAGSCCLVGIICSGLLYIANAGDSRVVLGRMENDVKEVKavqlssehnASMEFVREELRalhpddpqivvlkhkvwrvkgiiqvti
MVSATFMKIVSPCWKPSTEGENSNSDGEDNGRVDGLLWYKDSGHHVSGEFSMAVVQANNQLEDCsqlesgplsslesgpqgTFVGIYDGHGGPEAARFVNDHLFDNIKTIHGAEFTSESCGISADVITRAFLETEEEFLSLVRNQWLNKPQIASAGSCCLVGIICSGLLYIANAGDSRVVLGRMENDVKEVKAVQLSSEHNASMEFVREELRALHPDDPQIVVLKHKVWRVKGIIQVTI
********IV**********************VDGLLWYKDSGHHVSGEFSMAVVQ*************************TFVGIYDGHGGPEAARFVNDHLFDNIKTIHGAEFTSESCGISADVITRAFLETEEEFLSLVRNQWLNKPQIASAGSCCLVGIICSGLLYIANAGDSRVVLGRMENDVK*****************VR*ELRALHPDDPQIVVLKHKVWRVKGIIQV**
****TFMKIVSPCW***************************SGHHVSGEFSMAVVQANNQLEDCSQLESGPLSSLESGPQGTFVGIYDGHGGPEAARFVNDHLFDNIKTIHGAEFTSESCGISADVITRAFLETEEEFLSLVRN*******IASAGSCCLVGIICSGLLYIANAGDSRVVLGRMENDVKEVKAVQLSSEHNASMEFVREELRALHPDDPQIVVLKHKVWRVKGIIQVT*
MVSATFMKIVSPCWK*************DNGRVDGLLWYKDSGHHVSGEFSMAVVQANNQLEDCS***********SGPQGTFVGIYDGHGGPEAARFVNDHLFDNIKTIHGAEFTSESCGISADVITRAFLETEEEFLSLVRNQWLNKPQIASAGSCCLVGIICSGLLYIANAGDSRVVLGRMENDVKEVKAVQLSSEHNASMEFVREELRALHPDDPQIVVLKHKVWRVKGIIQVTI
*VSATFMKIVSPCWKPST*************RVDGLLWYKDSGHHVSGEFSMAVVQANNQLEDCSQLESGPLSSLESGPQGTFVGIYDGHGGPEAARFVNDHLFDNIKTIHGAEFTSESCGISADVITRAFLETEEEFLSLVRNQWLNKPQIASAGSCCLVGIICSGLLYIANAGDSRVVLGRMENDVKEVKAVQLSSEHNASMEFVREELRALHPDDPQIVVLKHKVWRVKGIIQVTI
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVSATFMKIVSPCWKPSTEGENSNSDGEDNGRVDGLLWYKDSGHHVSGEFSMAVVQANNQLEDCSQLESGPLSSLESGPQGTFVGIYDGHGGPEAARFVNDHLFDNIKTIHGAEFTSESCGISADVITRAFLETEEEFLSLVRNQWLNKPQIASAGSCCLVGIICSGLLYIANAGDSRVVLGRMENDVKEVKAVQLSSEHNASMEFVREELRALHPDDPQIVVLKHKVWRVKGIIQVTI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query239 2.2.26 [Sep-21-2011]
Q9LHJ9 385 Probable protein phosphat yes no 0.958 0.594 0.746 1e-101
Q94CL8 384 Probable protein phosphat no no 0.974 0.606 0.732 1e-99
Q5Z8P0 392 Probable protein phosphat yes no 0.949 0.579 0.613 2e-80
Q10S32 399 Probable protein phosphat no no 0.962 0.576 0.617 4e-80
Q7XCJ7 393 Probable protein phosphat no no 0.970 0.590 0.610 4e-79
Q9SD12 379 Probable protein phosphat no no 0.949 0.598 0.608 4e-79
Q5PNS9 400 Probable protein phosphat no no 0.949 0.567 0.596 2e-76
Q9FKX4 385 Probable protein phosphat no no 0.853 0.529 0.628 5e-74
Q501F9 370 Probable protein phosphat no no 0.920 0.594 0.556 3e-69
Q7XUC5 388 Probable protein phosphat no no 0.907 0.559 0.521 1e-56
>sp|Q9LHJ9|P2C38_ARATH Probable protein phosphatase 2C 38 OS=Arabidopsis thaliana GN=At3g12620 PE=2 SV=1 Back     alignment and function desciption
 Score =  366 bits (940), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/237 (74%), Positives = 206/237 (86%), Gaps = 8/237 (3%)

Query: 3   SATFMKIVSPCWK-PSTEGENSNSDGEDNGRVDGLLWYKDSGHHVSGEFSMAVVQANNQL 61
           SAT +++V+PCW+ PS +G++S  D   NGR DGLLWYKDSG+HV+GEFSM+V+QANN L
Sbjct: 4   SATILRMVAPCWRRPSVKGDHSTRDA--NGRCDGLLWYKDSGNHVAGEFSMSVIQANNLL 61

Query: 62  EDCSQLESGPLSSLESGPQGTFVGIYDGHGGPEAARFVNDHLFDNIKTIHGAEFTSESCG 121
           ED S+LESGP+S  +SGPQ TFVG+YDGHGGPEAARFVN HLFDNI+     +FTSE+ G
Sbjct: 62  EDHSKLESGPVSMFDSGPQATFVGVYDGHGGPEAARFVNKHLFDNIR-----KFTSENHG 116

Query: 122 ISADVITRAFLETEEEFLSLVRNQWLNKPQIASAGSCCLVGIICSGLLYIANAGDSRVVL 181
           +SA+VIT+AFL TEE+FLSLVR QW  KPQIAS G+CCLVGIICSGLLYIANAGDSRVVL
Sbjct: 117 MSANVITKAFLATEEDFLSLVRRQWQIKPQIASVGACCLVGIICSGLLYIANAGDSRVVL 176

Query: 182 GRMENDVKEVKAVQLSSEHNASMEFVREELRALHPDDPQIVVLKHKVWRVKGIIQVT 238
           GR+E   K VKAVQLSSEHNAS+E VREELR+LHP+DPQIVVLKHKVWRVKGIIQV+
Sbjct: 177 GRLEKAFKIVKAVQLSSEHNASLESVREELRSLHPNDPQIVVLKHKVWRVKGIIQVS 233

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6
>sp|Q94CL8|P2C48_ARATH Probable protein phosphatase 2C 48 OS=Arabidopsis thaliana GN=PP2C6 PE=2 SV=1 Back     alignment and function description
>sp|Q5Z8P0|P2C60_ORYSJ Probable protein phosphatase 2C 60 OS=Oryza sativa subsp. japonica GN=Os06g0717800 PE=2 SV=1 Back     alignment and function description
>sp|Q10S32|P2C28_ORYSJ Probable protein phosphatase 2C 28 OS=Oryza sativa subsp. japonica GN=Os03g0137200 PE=2 SV=1 Back     alignment and function description
>sp|Q7XCJ7|P2C72_ORYSJ Probable protein phosphatase 2C 72 OS=Oryza sativa subsp. japonica GN=Os10g0544900 PE=2 SV=1 Back     alignment and function description
>sp|Q9SD12|P2C46_ARATH Probable protein phosphatase 2C 46 OS=Arabidopsis thaliana GN=At3g51370 PE=2 SV=1 Back     alignment and function description
>sp|Q5PNS9|P2C64_ARATH Probable protein phosphatase 2C 64 OS=Arabidopsis thaliana GN=At4g38520 PE=2 SV=1 Back     alignment and function description
>sp|Q9FKX4|P2C79_ARATH Probable protein phosphatase 2C 79 OS=Arabidopsis thaliana GN=At5g66080 PE=2 SV=1 Back     alignment and function description
>sp|Q501F9|P2C67_ARATH Probable protein phosphatase 2C 67 OS=Arabidopsis thaliana GN=At5g02760 PE=2 SV=1 Back     alignment and function description
>sp|Q7XUC5|P2C43_ORYSJ Probable protein phosphatase 2C 43 OS=Oryza sativa subsp. japonica GN=Os04g0584300 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query239
449451695 389 PREDICTED: probable protein phosphatase 0.995 0.611 0.789 1e-108
224100889 386 predicted protein [Populus trichocarpa] 0.974 0.603 0.756 1e-104
225448757 385 PREDICTED: probable protein phosphatase 0.970 0.602 0.781 1e-104
224109644 386 predicted protein [Populus trichocarpa] 0.974 0.603 0.743 1e-103
312283243 387 unnamed protein product [Thellungiella h 0.974 0.602 0.748 1e-101
42564100 385 putative protein phosphatase 2C 38 [Arab 0.958 0.594 0.746 4e-99
297834066 386 phosphatase 2C family protein [Arabidops 0.962 0.595 0.742 1e-98
30694180 384 putative protein phosphatase 2C 48 [Arab 0.974 0.606 0.732 8e-98
297820260 384 serine/threonine protein phosphatase 2C 0.974 0.606 0.736 1e-97
12321955 376 protein phosphatase 2C, putative; 16828- 0.933 0.593 0.753 8e-97
>gi|449451695|ref|XP_004143597.1| PREDICTED: probable protein phosphatase 2C 38-like [Cucumis sativus] gi|449509006|ref|XP_004163467.1| PREDICTED: probable protein phosphatase 2C 38-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/238 (78%), Positives = 211/238 (88%)

Query: 1   MVSATFMKIVSPCWKPSTEGENSNSDGEDNGRVDGLLWYKDSGHHVSGEFSMAVVQANNQ 60
           MVS TFMKIVSPCWKP  EGENS+ DG+ +GRVDGLLWYKDSG H++G+FSMAV+QANN 
Sbjct: 1   MVSETFMKIVSPCWKPLVEGENSSRDGDASGRVDGLLWYKDSGRHINGDFSMAVIQANNL 60

Query: 61  LEDCSQLESGPLSSLESGPQGTFVGIYDGHGGPEAARFVNDHLFDNIKTIHGAEFTSESC 120
           LED SQLESGPLSS ESGP GTFVGIYDGHGGPEAA+F+ND LF+N+KT H AEF  E+ 
Sbjct: 61  LEDRSQLESGPLSSYESGPVGTFVGIYDGHGGPEAAQFINDRLFNNMKTFHDAEFIPENQ 120

Query: 121 GISADVITRAFLETEEEFLSLVRNQWLNKPQIASAGSCCLVGIICSGLLYIANAGDSRVV 180
           G+SA++I +AFLETEEEFLSLV+ QWL KPQIAS GSCCLVGIIC GLLYIANAGDSRVV
Sbjct: 121 GVSAEIINKAFLETEEEFLSLVKKQWLIKPQIASVGSCCLVGIICCGLLYIANAGDSRVV 180

Query: 181 LGRMENDVKEVKAVQLSSEHNASMEFVREELRALHPDDPQIVVLKHKVWRVKGIIQVT 238
           LGR E   KEVKA+QLSSEHNAS+E VREEL +LHP+DPQIVVLKHKVWRVKG+IQV+
Sbjct: 181 LGRFERTHKEVKAIQLSSEHNASIESVREELHSLHPNDPQIVVLKHKVWRVKGVIQVS 238

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224100889|ref|XP_002312054.1| predicted protein [Populus trichocarpa] gi|222851874|gb|EEE89421.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225448757|ref|XP_002281610.1| PREDICTED: probable protein phosphatase 2C 38 [Vitis vinifera] gi|297736452|emb|CBI25323.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224109644|ref|XP_002315265.1| predicted protein [Populus trichocarpa] gi|222864305|gb|EEF01436.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|312283243|dbj|BAJ34487.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|42564100|ref|NP_187868.2| putative protein phosphatase 2C 38 [Arabidopsis thaliana] gi|79313205|ref|NP_001030682.1| putative protein phosphatase 2C 38 [Arabidopsis thaliana] gi|75273276|sp|Q9LHJ9.1|P2C38_ARATH RecName: Full=Probable protein phosphatase 2C 38; Short=AtPP2C38 gi|9294356|dbj|BAB02253.1| protein phosphatase 2C [Arabidopsis thaliana] gi|28466963|gb|AAO44090.1| At3g12620 [Arabidopsis thaliana] gi|110735750|dbj|BAE99854.1| hypothetical protein [Arabidopsis thaliana] gi|222424096|dbj|BAH20008.1| AT3G12620 [Arabidopsis thaliana] gi|222424228|dbj|BAH20072.1| AT3G12620 [Arabidopsis thaliana] gi|332641703|gb|AEE75224.1| putative protein phosphatase 2C 38 [Arabidopsis thaliana] gi|332641704|gb|AEE75225.1| putative protein phosphatase 2C 38 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297834066|ref|XP_002884915.1| phosphatase 2C family protein [Arabidopsis lyrata subsp. lyrata] gi|297330755|gb|EFH61174.1| phosphatase 2C family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30694180|ref|NP_191065.2| putative protein phosphatase 2C 48 [Arabidopsis thaliana] gi|42572685|ref|NP_974438.1| putative protein phosphatase 2C 48 [Arabidopsis thaliana] gi|75249980|sp|Q94CL8.1|P2C48_ARATH RecName: Full=Probable protein phosphatase 2C 48; Short=AtPP2C48; AltName: Full=Protein phosphatase 2C 6 gi|15020818|emb|CAC44619.1| Ser/Thr protein phosphatase 2C [Arabidopsis thaliana] gi|48525333|gb|AAT44968.1| At3g55050 [Arabidopsis thaliana] gi|61656143|gb|AAX49374.1| At3g55050 [Arabidopsis thaliana] gi|110738459|dbj|BAF01155.1| protein phosphatase 2C like protein [Arabidopsis thaliana] gi|332645811|gb|AEE79332.1| putative protein phosphatase 2C 48 [Arabidopsis thaliana] gi|332645812|gb|AEE79333.1| putative protein phosphatase 2C 48 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297820260|ref|XP_002878013.1| serine/threonine protein phosphatase 2C [Arabidopsis lyrata subsp. lyrata] gi|297323851|gb|EFH54272.1| serine/threonine protein phosphatase 2C [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|12321955|gb|AAG51012.1|AC069474_11 protein phosphatase 2C, putative; 16828-18284 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query239
TAIR|locus:2091265 385 AT3G12620 [Arabidopsis thalian 0.958 0.594 0.700 7.2e-84
TAIR|locus:2097238 384 AT3G55050 [Arabidopsis thalian 0.974 0.606 0.682 1.9e-83
TAIR|locus:2081770 379 AT3G51370 [Arabidopsis thalian 0.945 0.596 0.559 3.6e-66
TAIR|locus:2121234 400 AT4G38520 [Arabidopsis thalian 0.966 0.577 0.537 3.3e-63
TAIR|locus:2156877 385 AT5G66080 [Arabidopsis thalian 0.966 0.6 0.535 3.3e-63
TAIR|locus:2151256 370 AT5G02760 [Arabidopsis thalian 0.920 0.594 0.521 3.5e-59
TAIR|locus:2086097 384 AT3G17090 [Arabidopsis thalian 0.933 0.580 0.467 8.3e-51
TAIR|locus:2170234 393 AT5G06750 [Arabidopsis thalian 0.866 0.526 0.484 1.1e-48
TAIR|locus:2118899 380 AT4G33920 [Arabidopsis thalian 0.803 0.505 0.5 1.1e-46
TAIR|locus:2089293 493 AT3G16560 [Arabidopsis thalian 0.543 0.263 0.338 3e-17
TAIR|locus:2091265 AT3G12620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 840 (300.8 bits), Expect = 7.2e-84, P = 7.2e-84
 Identities = 166/237 (70%), Positives = 192/237 (81%)

Query:     3 SATFMKIVSPCWK-PSTEGENSNSDGEDNGRVDGLLWYKDSGHHVSGEFSMAVVQANNQL 61
             SAT +++V+PCW+ PS +G++S  D   NGR DGLLWYKDSG+HV+GEFSM+V+QANN L
Sbjct:     4 SATILRMVAPCWRRPSVKGDHSTRDA--NGRCDGLLWYKDSGNHVAGEFSMSVIQANNLL 61

Query:    62 EDCXXXXXXXXXXXXXXXXXTFVGIYDGHGGPEAARFVNDHLFDNIKTIHGAEFTSESCG 121
             ED                  TFVG+YDGHGGPEAARFVN HLFDNI+     +FTSE+ G
Sbjct:    62 EDHSKLESGPVSMFDSGPQATFVGVYDGHGGPEAARFVNKHLFDNIR-----KFTSENHG 116

Query:   122 ISADVITRAFLETEEEFLSLVRNQWLNKPQIASAGSCCLVGIICSGLLYIANAGDSRVVL 181
             +SA+VIT+AFL TEE+FLSLVR QW  KPQIAS G+CCLVGIICSGLLYIANAGDSRVVL
Sbjct:   117 MSANVITKAFLATEEDFLSLVRRQWQIKPQIASVGACCLVGIICSGLLYIANAGDSRVVL 176

Query:   182 GRMENDVKEVKAVQLSSEHNASMEFVREELRALHPDDPQIVVLKHKVWRVKGIIQVT 238
             GR+E   K VKAVQLSSEHNAS+E VREELR+LHP+DPQIVVLKHKVWRVKGIIQV+
Sbjct:   177 GRLEKAFKIVKAVQLSSEHNASLESVREELRSLHPNDPQIVVLKHKVWRVKGIIQVS 233
GO:0003824 "catalytic activity" evidence=IEA
GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA;ISS
GO:0006470 "protein dephosphorylation" evidence=IEA
GO:0008287 "protein serine/threonine phosphatase complex" evidence=IEA
TAIR|locus:2097238 AT3G55050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081770 AT3G51370 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121234 AT4G38520 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156877 AT5G66080 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2151256 AT5G02760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086097 AT3G17090 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2170234 AT5G06750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118899 AT4G33920 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089293 AT3G16560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LHJ9P2C38_ARATH3, ., 1, ., 3, ., 1, 60.74680.95810.5948yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.3.16LOW CONFIDENCE prediction!
3rd Layer3.1.30.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query239
cd00143254 cd00143, PP2Cc, Serine/threonine phosphatases, fam 5e-30
smart00332252 smart00332, PP2Cc, Serine/threonine phosphatases, 1e-28
pfam00481252 pfam00481, PP2C, Protein phosphatase 2C 2e-13
COG0631262 COG0631, PTC1, Serine/threonine protein phosphatas 1e-10
PLN03145 365 PLN03145, PLN03145, Protein phosphatase 2c; Provis 1e-10
PTZ00224 381 PTZ00224, PTZ00224, protein phosphatase 2C; Provis 0.004
>gnl|CDD|238083 cd00143, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity Back     alignment and domain information 
 Score =  111 bits (280), Expect = 5e-30
 Identities = 49/189 (25%), Positives = 75/189 (39%), Gaps = 24/189 (12%)

Query: 50  FSMAVVQANNQLEDCSQLESGPLSSLESGPQGTFVGIYDGHGGPEAARFVNDHLFDNIKT 109
                       ED   ++        +   G   G++DGHGG  A  F +  L + +  
Sbjct: 4   GVSDKGGDRKTNEDAVVIKPN-----LNNEDGGLFGVFDGHGGHAAGEFASKLLVEELLE 58

Query: 110 IHGAEFTSESCGISADVITRAFLETEEEFLSLVRNQWLNKPQIASAGSCCLVGIICSGLL 169
                 T     I  + + +AFL  +EE L   ++    +P  A +G+  +V +I    L
Sbjct: 59  ELEETLTLSEEDIE-EALRKAFLRADEEILEEAQD----EPDDARSGTTAVVALIRGNKL 113

Query: 170 YIANAGDSRVVLGRMENDVKEVKAVQLSSEHNASMEFVREELRALHPDDPQIVVLKHKVW 229
           Y+AN GDSR VL R        +AVQL+ +H    E  RE +                  
Sbjct: 114 YVANVGDSRAVLCRNG------EAVQLTKDHKPVNEEERERIEKAGGRVSN--------G 159

Query: 230 RVKGIIQVT 238
           RV G++ VT
Sbjct: 160 RVPGVLAVT 168

Length = 254
>gnl|CDD|214625 smart00332, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain Back     alignment and domain information
>gnl|CDD|215938 pfam00481, PP2C, Protein phosphatase 2C Back     alignment and domain information
>gnl|CDD|223704 COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|215603 PLN03145, PLN03145, Protein phosphatase 2c; Provisional Back     alignment and domain information
>gnl|CDD|240318 PTZ00224, PTZ00224, protein phosphatase 2C; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 239
KOG0700 390 consensus Protein phosphatase 2C/pyruvate dehydrog 100.0
KOG0698 330 consensus Serine/threonine protein phosphatase [Si 100.0
PF00481254 PP2C: Protein phosphatase 2C; InterPro: IPR001932 99.97
KOG0697 379 consensus Protein phosphatase 1B (formerly 2C) [Si 99.97
PLN03145 365 Protein phosphatase 2c; Provisional 99.97
PTZ00224 381 protein phosphatase 2C; Provisional 99.96
KOG0699 542 consensus Serine/threonine protein phosphatase [Si 99.93
COG0631262 PTC1 Serine/threonine protein phosphatase [Signal 99.92
smart00332255 PP2Cc Serine/threonine phosphatases, family 2C, ca 99.89
cd00143254 PP2Cc Serine/threonine phosphatases, family 2C, ca 99.87
PRK14559645 putative protein serine/threonine phosphatase; Pro 99.85
KOG1323 493 consensus Serine/threonine phosphatase [Signal tra 99.76
PF13672212 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 99.45
KOG1379330 consensus Serine/threonine protein phosphatase [Si 99.05
smart00331193 PP2C_SIG Sigma factor PP2C-like phosphatases. 99.03
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 98.78
TIGR02865764 spore_II_E stage II sporulation protein E. Stage I 97.26
PF07228193 SpoIIE: Stage II sporulation protein E (SpoIIE); I 96.93
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=4e-50  Score=357.41  Aligned_cols=235  Identities=49%  Similarity=0.793  Sum_probs=207.1

Q ss_pred             chHHHHHhhhccCCCCCCCCCCCC-CCCCCC-CCCccCcccCCCCCccceeeeeeecCCCCCCCceeeccCCCCCCCC-C
Q 026383            2 VSATFMKIVSPCWKPSTEGENSNS-DGEDNG-RVDGLLWYKDSGHHVSGEFSMAVVQANNQLEDCSQLESGPLSSLES-G   78 (239)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~w~~d~~~~~~g~~s~~~~~~r~~~ED~~~v~~~~l~~~~~-~   78 (239)
                      |++..+++.+.|++|..+...... +++..+ +.++++|+++...+..|+++++..+.++.++|...+..+++..... .
T Consensus        17 ~~~~~~~~~~s~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~v~~~n~~q~a~~~~~edrv~~~~s~~   96 (390)
T KOG0700|consen   17 MKSTPMRLKRSCLRPIRRGESSSRSGSDSSGNSVDGLLWYKDRSEHSFGDFSMAVLQANNLQEAQGKAEEDRVSVAVSEE   96 (390)
T ss_pred             hccccchhhhhccCCCccccccccccccCCCCCcccccccccccccCcccchhhhhhhhhhhhhcCCcccCcceeeeecc
Confidence            677889999999999987655443 222233 6799999999999999999999999998889988888777655444 5


Q ss_pred             CCeEEEEEecCCCChHHHHHHHHHHHHHHHHhhcc-------cccccC---------------------CcchHHHHHHH
Q 026383           79 PQGTFVGIYDGHGGPEAARFVNDHLFDNIKTIHGA-------EFTSES---------------------CGISADVITRA  130 (239)
Q Consensus        79 ~~~~lfgVfDGHGG~~aa~~~~~~l~~~l~~~l~~-------~~~~~~---------------------~~~~~~~i~~a  130 (239)
                      ++..|+||||||||++|++|++++|+.++..+|+.       +|..+.                     ...+.++|.+|
T Consensus        97 ~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~~al~~A  176 (390)
T KOG0700|consen   97 NGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSSADQRHGDVLEALSKA  176 (390)
T ss_pred             CCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcccccCccchhHHHHHHHH
Confidence            68999999999999999999999999999977754       244442                     45788999999


Q ss_pred             HHHHHHHHHHHHHhhhccCCCCCCCCCeEEEEEEECCEEEEEEccCCeEEEEeecCCCCceeEEeCCCCCCCCCHHHHHH
Q 026383          131 FLETEEEFLSLVRNQWLNKPQIASAGSCCLVGIICSGLLYIANAGDSRVVLGRMENDVKEVKAVQLSSEHNASMEFVREE  210 (239)
Q Consensus       131 f~~~d~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vANvGDSRavl~r~~~~~~~~~~~~LT~dH~~~~~~Er~R  210 (239)
                      |+++|++|++.+.+.+..+|+.+.+||||+|++|++..|||||+|||||||+...+.++.+.++|||+||++++++|++|
T Consensus       177 f~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~qLS~dHn~~ne~Ev~R  256 (390)
T KOG0700|consen  177 FEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQLSTDHNASNEDEVRR  256 (390)
T ss_pred             HHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEecChhhccccHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999875555589999999999999999999


Q ss_pred             HHHcCCCCCCeEEeeCCeeeeeeEEeec
Q 026383          211 LRALHPDDPQIVVLKHKVWRVKGIIQVT  238 (239)
Q Consensus       211 I~~~g~~d~~~vv~~~g~~RV~G~l~vS  238 (239)
                      |++.||+|++++++++  |||+|+|+||
T Consensus       257 ir~eHPdd~~~vv~~~--~RvkG~L~vs  282 (390)
T KOG0700|consen  257 IRSEHPDDPHIVVNKH--WRVKGILQVS  282 (390)
T ss_pred             HHHhCCCCcceEeecc--ceeeEEEEee
Confidence            9999999999999998  7999999997

>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg Back     alignment and domain information
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms] Back     alignment and domain information
>PLN03145 Protein phosphatase 2c; Provisional Back     alignment and domain information
>PTZ00224 protein phosphatase 2C; Provisional Back     alignment and domain information
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain Back     alignment and domain information
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity Back     alignment and domain information
>PRK14559 putative protein serine/threonine phosphatase; Provisional Back     alignment and domain information
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B Back     alignment and domain information
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02865 spore_II_E stage II sporulation protein E Back     alignment and domain information
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query239
4da1_A389 Crystal Structure Of Branched-Chain Alpha-Ketoacid 2e-07
2iq1_A274 Crystal Structure Of Human Ppm1k Length = 274 2e-07
3rt0_A 340 Crystal Structure Of Pyl10-Hab1 Complex In The Abse 2e-06
4ds8_B 343 Complex Structure Of Abscisic Acid Receptor Pyl3-(+ 4e-06
3nmt_B 341 Crystal Structure Of Pyrabactin Bound Abscisic Acid 4e-06
3ujg_B 350 Crystal Structure Of Snrk2.6 In Complex With Hab1 L 5e-06
3qn1_B 337 Crystal Structure Of The Pyr1 Abscisic Acid Recepto 5e-06
3kb3_B 321 Crystal Structure Of Abscisic Acid-Bound Pyl2 In Co 5e-06
2i0o_A304 Crystal Structure Of Anopheles Gambiae SerTHR PHOSP 1e-05
3mq3_A 467 Crystal Structure Of Native Bovine Pdp1c Length = 4 9e-05
3kdj_B 316 Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1 Le 1e-04
2pnq_A 467 Crystal Structure Of Pyruvate Dehydrogenase Phospha 2e-04
1a6q_A 382 Crystal Structure Of The Protein SerineTHREONINE PH 4e-04
3fxj_A 390 Crystal Structure Of Human Protein Phosphatase 1a ( 4e-04
3nmn_B 319 Crystal Structure Of Pyrabactin-Bound Abscisic Acid 5e-04
3jrq_A 326 Crystal Structure Of (+)-aba-bound Pyl1 In Complex 6e-04
2p8e_A307 Crystal Structure Of The SerineTHREONINE PHOSPHATAS 8e-04
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid Dehydrogenase Phosphatase With Mg (Ii) Ions At The Active Site Length = 389 Back     alignment and structure 
Iteration: 1

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 15/131 (11%)
Query: 83  FVGIYDGHGGPEAARFVNDHLFDNIKTIHGAEFTSESCGISADVITRAFLETEEEFLSLV 142
           +  +YDGHGGP AA F + H+   I  +   E   E+      ++T AFLE ++ F S  
Sbjct: 151 YFAVYDGHGGPAAADFCHTHMEKCIMDLLPKEKNLET------LLTLAFLEIDKAFSSHA 204
Query: 143 RNQWLNKPQIASAGSCCLVGIICSGL-LYIANAGDSRVVLGRMENDVKEVKAVQLSSEHN 201
           R        + ++G+   V ++  G+ L +A+ GDSR +L R      + K ++L+ +H 
Sbjct: 205 R--LSADATLLTSGTTATVALLRDGIELVVASVGDSRAILCR------KGKPMKLTIDHT 256
Query: 202 ASMEFVREELR 212
              +  +E ++
Sbjct: 257 PERKDEKERIK 267
>pdb|2IQ1|A Chain A, Crystal Structure Of Human Ppm1k Length = 274 Back     alignment and structure
>pdb|3RT0|A Chain A, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of Abscisic Acid (Aba) Length = 340 Back     alignment and structure
>pdb|4DS8|B Chain B, Complex Structure Of Abscisic Acid Receptor Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+ Length = 343 Back     alignment and structure
>pdb|3NMT|B Chain B, Crystal Structure Of Pyrabactin Bound Abscisic Acid Receptor Pyl2 Mutant A93f In Complex With Type 2c Protein Phosphatase Hab1 Length = 341 Back     alignment and structure
>pdb|3UJG|B Chain B, Crystal Structure Of Snrk2.6 In Complex With Hab1 Length = 350 Back     alignment and structure
>pdb|3QN1|B Chain B, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In Complex With The Hab1 Type 2c Phosphatase Catalytic Domain Length = 337 Back     alignment and structure
>pdb|3KB3|B Chain B, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex With Hab1 Length = 321 Back     alignment and structure
>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR PHOSPHATASE COMPLEXED With Zn2+ Length = 304 Back     alignment and structure
>pdb|3MQ3|A Chain A, Crystal Structure Of Native Bovine Pdp1c Length = 467 Back     alignment and structure
>pdb|3KDJ|B Chain B, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1 Length = 316 Back     alignment and structure
>pdb|2PNQ|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1 (Pdp1) Length = 467 Back     alignment and structure
>pdb|1A6Q|A Chain A, Crystal Structure Of The Protein SerineTHREONINE PHOSPHATASE 2C AT 2 A Resolution Length = 382 Back     alignment and structure
>pdb|3FXJ|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a) Bound With Phosphate At 3 Mm Of Mn2+ Length = 390 Back     alignment and structure
>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid Receptor Pyl1 In Complex With Type 2c Protein Phosphatase Abi1 Length = 319 Back     alignment and structure
>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With Abi1 Length = 326 Back     alignment and structure
>pdb|2P8E|A Chain A, Crystal Structure Of The SerineTHREONINE PHOSPHATASE Domain Of Human Ppm1b Length = 307 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query239
2j4o_A 401 Mitogen-activated protein kinase kinase kinase 7-i 2e-39
2pnq_A 467 [pyruvate dehydrogenase [lipoamide]]-phosphatase 1 1e-36
2i44_A 324 Serine-threonine phosphatase 2C; PSI-2, 8817Z, str 7e-27
2irm_A 358 Mitogen-activated protein kinase kinase kinase 7 i 9e-27
2iq1_A274 Protein phosphatase 2C kappa, PPM1K; structural ge 1e-25
3qn1_B 337 Protein phosphatase 2C 16; start domain, BET V dom 4e-25
4da1_A389 Protein phosphatase 1K, mitochondrial; metal-ION-a 1e-24
3kdj_B 316 Protein phosphatase 2C 56; ABA, PYL1, abscisic aci 4e-24
2p8e_A 307 PPM1B beta isoform variant 6; structural genomics, 6e-23
1a6q_A 382 Phosphatase 2C; catalytic mechanism, metalloenzyme 3e-22
2i0o_A 304 Ser/Thr phosphatase; beta sandwich, structural gen 4e-22
3d8k_A 377 PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR 4e-13
2isn_A 364 NYSGXRC-8828Z, phosphatase; pathogenic strain, pra 2e-11
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A Length = 401 Back     alignment and structure
 Score =  139 bits (351), Expect = 2e-39
 Identities = 41/237 (17%), Positives = 72/237 (30%), Gaps = 54/237 (22%)

Query: 37  LWYKDSGHHVSGEFSMAVVQ---------ANNQLEDCSQLESGPLSSLESGPQGTFVGIY 87
            W  D           A  +          ++  ED             S       G++
Sbjct: 16  SWTDDLPLCHLSGVGSASNRSYSADGKGTESHPPEDSWL-------KFRSENNCFLYGVF 68

Query: 88  DGHGGPEAARFVNDHLFDNIKTIHGAEFTSESCGISADVITRAFLETEEEFLSLVRNQWL 147
           +G+ G     FV   L   +  + G      +      V+ +AF   E  FL  + +   
Sbjct: 69  NGYDGNRVTNFVAQRLSAEL--LLGQLNAEHAEADVRRVLLQAFDVVERSFLESIDDALA 126

Query: 148 NKPQIA------------------------------SAGSCCLVGIICSGLLYIANAGDS 177
            K  +                               S G+  +V ++ +  LY+AN G +
Sbjct: 127 EKASLQSQLPEGVPQHQLPPQYQKILERLKTLEREISGGAMAVVAVLLNNKLYVANVGTN 186

Query: 178 RVVLGRMENDVKEVKAVQLSSEHNASMEFVREELRALHPDDPQIVVLKHKVWRVKGI 234
           R +L +  + V  ++  QL+ +H    E     L  L  D  +I      V  + G 
Sbjct: 187 RALLCK--STVDGLQVTQLNVDHTTENEDELFRLSQLGLDAGKIKQ----VGIICGQ 237
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A Length = 467 Back     alignment and structure
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii} Length = 324 Back     alignment and structure
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae} Length = 358 Back     alignment and structure
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens} Length = 274 Back     alignment and structure
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3ujg_B 3nmt_B* 3rt0_A 3kb3_B* Length = 337 Back     alignment and structure
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Length = 389 Back     alignment and structure
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B* Length = 316 Back     alignment and structure
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens} Length = 307 Back     alignment and structure
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A Length = 382 Back     alignment and structure
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae} Length = 304 Back     alignment and structure
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii} Length = 377 Back     alignment and structure
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii} Length = 364 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query239
2pnq_A 467 [pyruvate dehydrogenase [lipoamide]]-phosphatase 1 99.97
2irm_A 358 Mitogen-activated protein kinase kinase kinase 7 i 99.97
2j4o_A 401 Mitogen-activated protein kinase kinase kinase 7-i 99.97
2i0o_A 304 Ser/Thr phosphatase; beta sandwich, structural gen 99.97
3qn1_B 337 Protein phosphatase 2C 16; start domain, BET V dom 99.97
3kdj_B 316 Protein phosphatase 2C 56; ABA, PYL1, abscisic aci 99.96
2iq1_A274 Protein phosphatase 2C kappa, PPM1K; structural ge 99.96
2isn_A 364 NYSGXRC-8828Z, phosphatase; pathogenic strain, pra 99.96
1a6q_A 382 Phosphatase 2C; catalytic mechanism, metalloenzyme 99.96
2p8e_A 307 PPM1B beta isoform variant 6; structural genomics, 99.96
2i44_A 324 Serine-threonine phosphatase 2C; PSI-2, 8817Z, str 99.96
4da1_A389 Protein phosphatase 1K, mitochondrial; metal-ION-a 99.96
3d8k_A 377 PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR 99.96
1txo_A237 Putative bacterial enzyme; serine/threonine protei 99.89
2pk0_A250 Serine/threonine protein phosphatase STP1; SI moti 99.88
2j82_A240 TPPHA, protein serine-threonine phosphatase; PP2C 99.87
2jfr_A234 Ser-Thr phosphatase MSPP; hydrolase, PPM phosphata 99.81
3rnr_A211 Stage II sporulation E family protein; structural 99.8
3t91_A242 Stage II sporulation protein E; SPOIIE, phosphatas 98.71
3pu9_A242 Protein serine/threonine phosphatase; PSI-biology, 98.61
3f79_A255 Probable two-component response regulator; adaptor 98.11
3zt9_A193 Serine phosphatase; hydrolase, signal transduction 97.73
3ke6_A 399 Protein RV1364C/MT1410; anti-sigma factor, anti-si 94.5
3eq2_A394 Probable two-component response regulator; adaptor 83.12
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A Back     alignment and structure
Probab=99.97  E-value=2e-32  Score=254.65  Aligned_cols=180  Identities=26%  Similarity=0.311  Sum_probs=135.9

Q ss_pred             eeeeeecCCCCCCCceeeccCCCCCCCCCCCeEEEEEecCCCChHHHHHHHHHHHHHHHHhh------ccc---------
Q 026383           50 FSMAVVQANNQLEDCSQLESGPLSSLESGPQGTFVGIYDGHGGPEAARFVNDHLFDNIKTIH------GAE---------  114 (239)
Q Consensus        50 ~s~~~~~~r~~~ED~~~v~~~~l~~~~~~~~~~lfgVfDGHGG~~aa~~~~~~l~~~l~~~l------~~~---------  114 (239)
                      |.....+.|.+|||++.+....      .++..||||||||||+.||+|++++|+.+|.+.+      ...         
T Consensus        41 ~~s~~g~~R~~nED~~~v~~~~------~~~~~lfgVfDGHGG~~aa~~as~~L~~~i~~~l~~~~~l~~~~~~~~~~~~  114 (467)
T 2pnq_A           41 FDSNRLPANAPIEDRRSATTCL------QTRGMLLGVFDGHAGCACSQAVSERLFYYIAVSLLPHETLLEIENAVESGRA  114 (467)
T ss_dssp             EEEEEECCSSSCCEEEEEEEES------SSSCEEEEEEEEESSSHHHHHHHHHHHHHHHHHHCCHHHHHHHHTTTC----
T ss_pred             EEeeccCCCCCCCCceeeeecc------CCCcEEEEEECCCCCHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhcccc
Confidence            4444455699999999875321      1257899999999999999999999999997542      100         


Q ss_pred             -------------ccc--------------------c-----CCcchHHHHHHHHHHHHHHHHHHHHhh------hccCC
Q 026383          115 -------------FTS--------------------E-----SCGISADVITRAFLETEEEFLSLVRNQ------WLNKP  150 (239)
Q Consensus       115 -------------~~~--------------------~-----~~~~~~~~i~~af~~~d~~~~~~~~~~------~~~~~  150 (239)
                                   +..                    .     ....+.++|++||.++|+.|.+.....      +...+
T Consensus       115 ~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~af~~~d~~i~~~~~~~~~~~~~~~~~~  194 (467)
T 2pnq_A          115 LLPILQWHKHPNDYFSKEASKLYFNGLRTYWQELIDLNTGESADIDVKEALINAFKRLDNDISLEAQVGDPNSFLNYLVL  194 (467)
T ss_dssp             CCCCEEECCCTTCCCCSTTHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred             ccccccccccccccchhhhhhhhhcchhhhhhhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccc
Confidence                         000                    0     111578899999999999998765321      00011


Q ss_pred             CCCCCCCeEEEEEEECCEEEEEEccCCeEEEEeecCCCCceeEEeCCCCCCCCCHHHHHHHHHcCCCCCCeEEeeCCeee
Q 026383          151 QIASAGSCCLVGIICSGLLYIANAGDSRVVLGRMENDVKEVKAVQLSSEHNASMEFVREELRALHPDDPQIVVLKHKVWR  230 (239)
Q Consensus       151 ~~~~~GsTa~v~li~~~~l~vANvGDSRavl~r~~~~~~~~~~~~LT~dH~~~~~~Er~RI~~~g~~d~~~vv~~~g~~R  230 (239)
                      ....+||||++++|.++++||||+|||||||++.. .++.+.+++||.||+|.++.|++||+++||.++.-.+..++  |
T Consensus       195 ~~~~~GtTa~v~li~~~~l~vAnvGDSRa~l~r~~-~~g~~~~~~LT~DH~~~~~~E~~Ri~~~g~~~~~~~~~~~~--R  271 (467)
T 2pnq_A          195 RVAFSGATACVAHVDGVDLHVANTGDSRAMLGVQE-EDGSWSAVTLSNDHNAQNERELQRLKLEHPKNEAKSVVKQD--R  271 (467)
T ss_dssp             HHHHSEECEEEEEEETTEEEEEEESSCEEEEEEEC-TTSCEEEEECCCCCSTTCHHHHHHHHHTSCGGGHHHHBSSS--S
T ss_pred             cCCCCcceEEEEEEECCEEEEEECCCceEEEEEec-CCCcEEEEECCCCCCCCCHHHHHHHHHcCCCcccceeEecC--c
Confidence            23459999999999999999999999999999974 34567899999999999999999999999865432333456  9


Q ss_pred             eeeEEeec
Q 026383          231 VKGIIQVT  238 (239)
Q Consensus       231 V~G~l~vS  238 (239)
                      |+|.|+||
T Consensus       272 v~G~l~vt  279 (467)
T 2pnq_A          272 LLGLLMPF  279 (467)
T ss_dssp             BTTTBSSS
T ss_pred             cccccccc
Confidence            99988876
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae} Back     alignment and structure
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A Back     alignment and structure
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae} Back     alignment and structure
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3zvu_B* 3ujg_B 3nmt_B* 4ds8_B* 3rt0_A 3kb3_B* Back     alignment and structure
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B* Back     alignment and structure
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens} Back     alignment and structure
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii} Back     alignment and structure
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A Back     alignment and structure
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens} Back     alignment and structure
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii} Back     alignment and structure
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Back     alignment and structure
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii} Back     alignment and structure
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases, PSTP/PPP, structural genomics, PSI, protein structure initiative; 1.95A {Mycobacterium tuberculosis} SCOP: d.219.1.1 PDB: 2cm1_A Back     alignment and structure
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae} Back     alignment and structure
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family phosphatase, hydrolase; 1.28A {Synechococcus elongatus} PDB: 2j86_A 2y09_A 2xzv_A Back     alignment and structure
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese, phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A 2jft_A 2v06_A Back     alignment and structure
>3rnr_A Stage II sporulation E family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans} Back     alignment and structure
>3t91_A Stage II sporulation protein E; SPOIIE, phosphatase, manganese binding, PP2C PH domain; HET: GL0 MAN; 2.64A {Bacillus subtilis} PDB: 3t9q_A* Back     alignment and structure
>3pu9_A Protein serine/threonine phosphatase; PSI-biology, MCSG, structural genomics; HET: MSE; 1.55A {Sphaerobacter thermophilus} Back     alignment and structure
>3f79_A Probable two-component response regulator; adaptor, signaling protein; 2.80A {Pseudomonas aeruginosa} PDB: 3es2_A Back     alignment and structure
>3zt9_A Serine phosphatase; hydrolase, signal transduction, protein protein interaction,; HET: PEG; 1.75A {Moorella thermoacetica} Back     alignment and structure
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 239
d1a6qa2295 d.219.1.1 (A:2-296) Protein serine/threonine phosp 3e-09
d1txoa_235 d.219.1.1 (A:) putative serine/threonine phosphata 2e-06
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 295 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: PP2C-like
superfamily: PP2C-like
family: PP2C-like
domain: Protein serine/threonine phosphatase 2C, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 3e-09
 Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 2/114 (1%)

Query: 76  ESGPQGTFVGIYDGHGGPEAARFVNDHLFDNIKTIHGAEFTSESCGISADVITRAFLETE 135
                 +F  +YDGH G + A++  +HL D+I      +F   +   S + +        
Sbjct: 47  SGLESWSFFAVYDGHAGSQVAKYCCEHLLDHITNNQ--DFKGSAGAPSVENVKNGIRTGF 104

Query: 136 EEFLSLVRNQWLNKPQIASAGSCCLVGIICSGLLYIANAGDSRVVLGRMENDVK 189
            E    +R     K     +GS  +  +I     Y  N GDSR +L R      
Sbjct: 105 LEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHF 158
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]} Length = 235 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query239
d1a6qa2 295 Protein serine/threonine phosphatase 2C, catalytic 100.0
d1txoa_235 putative serine/threonine phosphatase pstp/ppp {My 99.91
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: PP2C-like
superfamily: PP2C-like
family: PP2C-like
domain: Protein serine/threonine phosphatase 2C, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-34  Score=248.85  Aligned_cols=168  Identities=25%  Similarity=0.388  Sum_probs=133.3

Q ss_pred             eeeeeec-CCCCCCCceeeccCCCCCCCCCCCeEEEEEecCCCChHHHHHHHHHHHHHHHHhhcccccc--cCCcchHHH
Q 026383           50 FSMAVVQ-ANNQLEDCSQLESGPLSSLESGPQGTFVGIYDGHGGPEAARFVNDHLFDNIKTIHGAEFTS--ESCGISADV  126 (239)
Q Consensus        50 ~s~~~~~-~r~~~ED~~~v~~~~l~~~~~~~~~~lfgVfDGHGG~~aa~~~~~~l~~~l~~~l~~~~~~--~~~~~~~~~  126 (239)
                      |+.++++ .|.+|||++.+..+.   ..+.++..||||||||||+++|+|++++|+..|.+.+......  .....+.++
T Consensus        23 ~g~~s~~G~R~~~ED~~~~~~~~---~~~~~~~~lf~V~DGhGG~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~a   99 (295)
T d1a6qa2          23 YGLSSMQGWRVEMEDAHTAVIGL---PSGLESWSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNG   99 (295)
T ss_dssp             EEEEEEEETSSSCCEEEEEEEEE---TTTEEEEEEEEEEEEESCSHHHHHHHHHHHHHHHTSHHHHCSSSSCCHHHHHHH
T ss_pred             EEEEeCccCCCcccCeeEEEccc---CCCCCceEEEEEEeCCCChHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHH
Confidence            3444444 489999999886432   2333467899999999999999999999999998654322111  112357789


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCCCCCCCCCeEEEEEEECCEEEEEEccCCeEEEEeecCCCCceeEEeCCCCCCCCCHH
Q 026383          127 ITRAFLETEEEFLSLVRNQWLNKPQIASAGSCCLVGIICSGLLYIANAGDSRVVLGRMENDVKEVKAVQLSSEHNASMEF  206 (239)
Q Consensus       127 i~~af~~~d~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vANvGDSRavl~r~~~~~~~~~~~~LT~dH~~~~~~  206 (239)
                      |+++|..+++.+......    .+....+|||+++++|.++++||||+||||||+++.+      .+++||.||+|+++.
T Consensus       100 l~~a~~~~~~~~~~~~~~----~~~~~~~GtTa~~~~i~~~~l~vanvGDSR~~l~~~~------~~~~lT~dH~~~~~~  169 (295)
T d1a6qa2         100 IRTGFLEIDEHMRVMSEK----KHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNR------KVHFFTQDHKPSNPL  169 (295)
T ss_dssp             HHHHHHHHHHHHHHHHHH----TTCCCCCEECEEEEEECSSEEEEEEESSCEEEEEETT------EEEEECCCCCTTSHH
T ss_pred             HHHHHHHHHHHHhhhhhh----ccCcCCCCCeEEEEEeeCCEEEEEecCCCeEEEeecc------cceeeccccCcccHH
Confidence            999999999988765443    3344578999999999999999999999999999988      999999999999999


Q ss_pred             HHHHHHHcCCCCCCeEEeeCCeeeeeeEEeec
Q 026383          207 VREELRALHPDDPQIVVLKHKVWRVKGIIQVT  238 (239)
Q Consensus       207 Er~RI~~~g~~d~~~vv~~~g~~RV~G~l~vS  238 (239)
                      |++||++.|+    .+...    |++|.|.+|
T Consensus       170 E~~Ri~~~gg----~v~~~----r~~g~l~~t  193 (295)
T d1a6qa2         170 EKERIQNAGG----SVMIQ----RVNGSLAVS  193 (295)
T ss_dssp             HHHHHHHTTC----CEETT----EETTTBSCS
T ss_pred             HHhhHhhcCC----ccccc----ccCCceeee
Confidence            9999999995    34332    899988876
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure