Citrus Sinensis ID: 026385

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MAAGHHHHQDHEALTLERISQYLLNDLTPMDSYSFISNLPQQNPASTDEQILVQKTSSTLSQRKPSSINVRIPPPTTSIFRLKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVDCGKKRKYEENEEFERKVAVKKEETVSGGVGLGPLTPSSWTGFWDDGNGIFSVPPLSPCFGQLGVC
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHcccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccEEEEEccccccccEEEEcccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHcccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcEEEcccccEEEEEEcccccccEEEEcccccHHHHHHHHHHHHHHHHcccEEEcccHHHccccccccccHHHHHHHHHHHHHHccccccccccEEEEcccccccccccccccccEEcccccHccccccccccccEEcc
Coil and Loop (DISEMBL)
maaghhhhqdheaLTLERISQYLLndltpmdsysfisnlpqqnpastdeqILVQKtsstlsqrkpssinvripppttsifrlkdedkdlevaddykerhyrgvrrrpwgkyaaeirdpnkkgtrVWLGTFNTAVEAAKAYDNAAFKMRGRKAILnfpleigeisldsdevqqvdcgkkrkyeenEEFERKVAVKKeetvsggvglgpltpsswtgfwddgngifsvpplspcfgqlgvc
Flexible Loop (DISEMBL)
maaghhhhqdhealTLERISQYLLNDLTPMDSYSFISNLPQQNPASTDEQILVQKTsstlsqrkpssinvripppttsifrlkdedkdlevaddykerhyrgvrrrpwgkyaaeirdpnkkgtrvWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEigeisldsdevqqvdcgkkrkyeeneeferkvavkkeetvsggvglgpltpsSWTGFWDDGNGIFSVPplspcfgqlgvc
Low Complexity Region (SEG)
MAAGHHHHQDHEALTLERISQYLLNDLTPMDSYSFISNLPQQNPASTDEQILVQKTSSTLSQRKPSSINVRIPPPTTSIFRLKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVDCGKKRKYEENEEFERKVAVKKEETVSGGVGLGPLTPSSWTGFWDDGNGIFSVPPLSPCFGQLGVC
Disordered region (IsUnstruct)
****************ERISQYLLNDLTPMDSYSFI********************************************************DDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLD**********************************GGVGLGPLTPSSWTGFWDDGNGIFSVPPLSPCFGQL***
Disordered Region (DISOPRED)
************ALTLERISQYLLNDLTPMDSYSF*******************************************************************VRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPL****************************************************SSWTGFWDDGNGIFSVPPLSPCFGQLGVC
Disordered Region (DISEMBL)
************ALTLERISQYLLNDLTPMDSYSFISNLPQQNPASTDEQILVQK***********SINVRIPPPTTSIFRLKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVDCGKKRKYEENEEFERKVAVKKEETVSGGVGLGPLTPSSWTGFWDDGNGIFSVPPLSPCFGQLGVC
Disordered Region (DISPRO)
************ALTLERISQYLLNDLTPMDSYSFI************************************************************ERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEIS*****************************KKEET*****GLGPLT**SWTGFWDDGNGIFSVPPLSPCFGQLGVC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAGHHHHQDHEALTLERISQYLLNDLTPMDSYSFISNLPQQNPASTDEQILVQKTSSTLSQRKPSSINVRIPPPTTSIFRLKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVDCGxxxxxxxxxxxxxxxxxxxxxTVSGGVGLGPLTPSSWTGFWDDGNGIFSVPPLSPCFGQLGVC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	239	2.2.26 [Sep-21-2011]
Q8VY90	221	Ethylene-responsive trans	yes	no	0.849	0.918	0.472	2e-47
Q40478	291	Ethylene-responsive trans	N/A	no	0.832	0.683	0.479	5e-45
Q9FKG1	241	Ethylene-responsive trans	no	no	0.907	0.900	0.446	5e-43
Q9LW48	282	Ethylene-responsive trans	N/A	no	0.845	0.716	0.450	2e-42
O80341	300	Ethylene-responsive trans	no	no	0.690	0.55	0.452	3e-31
Q9LY05	207	Ethylene-responsive trans	no	no	0.698	0.806	0.41	1e-27
Q8VZ91	282	Ethylene-responsive trans	no	no	0.748	0.634	0.421	3e-27
Q40479	233	Ethylene-responsive trans	N/A	no	0.347	0.356	0.613	9e-24
Q9LW50	237	Ethylene-responsive trans	N/A	no	0.276	0.278	0.742	1e-23
O80337	268	Ethylene-responsive trans	no	no	0.430	0.384	0.509	3e-23

>sp|Q8VY90|EF105_ARATH Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1

 Score =  188 bits (478), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 113/239 (47%), Positives = 140/239 (58%), Gaps = 36/239 (15%)

Query: 1   MAAGHHHHQDHEALTLERISQYLLNDLTPMDSYSFISNLPQQNPASTDEQILVQKTSSTL 60
           MA+ H   Q+ +   L+ I+Q+LL D   +D++           AST        T+STL
Sbjct: 1   MASSHQQQQEQDQSALDLITQHLLTDFPSLDTF-----------ASTIHHC----TTSTL 45

Query: 61  SQRKPSSINVRIPPPTTSIFRLKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNK 120
           SQRKP    + +P  TT+            V  +  +RHYRGVRRRPWGKYAAEIRDPNK
Sbjct: 46  SQRKPPLATIAVP--TTA-----------PVVQENDQRHYRGVRRRPWGKYAAEIRDPNK 92

Query: 121 KGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVDCGKKRK 180
           KG RVWLGTF+TA+EAA+ YD AAFK+RG KAILNFPLE G+     D  + +    KRK
Sbjct: 93  KGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFPLEAGKHEDLGDNKKTISLKAKRK 152

Query: 181 ---YEENEEFERKVAVKKEETVSGGVGLGPLTPSSWTGFWDDGN----GIFSVPPLSPC 232
               E+  +   + AVK+EE         PLTPSSW GFWD  +    GIFSVP LSPC
Sbjct: 153 RQVTEDESQLISRKAVKREEAQVQADAC-PLTPSSWKGFWDGADSKDMGIFSVPLLSPC 210

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q40478|ERF5_TOBAC Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1

 Score =  181 bits (458), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 105/219 (47%), Positives = 132/219 (60%), Gaps = 20/219 (9%)

Query: 19  ISQYLLNDLTPMDSYSFISNLPQQNPASTDEQILVQKTSST-LSQRKPSSINVRIPPPTT 77
           IS +  N  T  DS+ F     +  P  +  +I       T   +RKPS +N+ IP    
Sbjct: 76  ISSFFNNSKTEFDSFEF-----ETKPNVSAARISSNSPKQTSFKERKPS-LNIAIP---- 125

Query: 78  SIFRLKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAA 137
                + E          +++HYRGVR+RPWGK+AAEIRDPN+KGTRVWLGTF+TA+EAA
Sbjct: 126 ---MKQQEVVQKVEVVPTEKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAA 182

Query: 138 KAYDNAAFKMRGRKAILNFPLEIGEISLDSDEV-QQVDCGKKRKYE-ENEEFERKVAVKK 195
           KAYD AAFK+RG KAI+NFPLE+       +E+ Q  + G+KR  E ENEE   K  VK+
Sbjct: 183 KAYDRAAFKLRGSKAIVNFPLEVANFKQQDNEILQPANSGRKRMRETENEEIVIKKEVKR 242

Query: 196 EETVSGGVGLGPLTPSSWTGFW--DDGNGIFSVPPLSPC 232
           EE V       PLTPSSW+  W  +DG GIF VPPLSP 
Sbjct: 243 EERVPAAA--APLTPSSWSAIWEGEDGKGIFEVPPLSPL 279

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

>sp|Q9FKG1|EF104_ARATH Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1

 Score =  174 bits (441), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 109/244 (44%), Positives = 138/244 (56%), Gaps = 27/244 (11%)

Query: 11  HEALTLERISQYLLNDLTPM--DSYSFISNLPQQNPASTDEQILVQ---KTSSTLSQRKP 65
            EAL ++ ISQ+LL D   M  D  S  +N      + T  + +     K +STL+QRKP
Sbjct: 5   QEALAIDFISQHLLTDFVSMETDHPSLFTNQLHNFHSETGPRTITNQSPKPNSTLNQRKP 64

Query: 66  SSINVRIPPPTTSIFRLKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRV 125
                  P P  S+ R            + +ERHYRGVRRRPWGKYAAEIRDPNKKG R+
Sbjct: 65  -------PLPNLSVSRTVSTKT----EKEEEERHYRGVRRRPWGKYAAEIRDPNKKGCRI 113

Query: 126 WLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVDCGKKRKYEENE 185
           WLGT++TAVEA +AYD AAF++RGRKAILNFPL++   S        +  GK+++ + + 
Sbjct: 114 WLGTYDTAVEAGRAYDQAAFQLRGRKAILNFPLDVRVTSETCSGEGVIGLGKRKRDKGSP 173

Query: 186 EFERKVAVKKEETVSGGVG---------LGPLTPSSWTGFWD--DGNGIFSVPPLSPCFG 234
             E K A  K E                + PLTPSSW GFWD   G+GIFS+PPLSP   
Sbjct: 174 PEEEKAARVKVEEEESNTSETTEAEVEPVVPLTPSSWMGFWDVGAGDGIFSIPPLSPTSP 233

Query: 235 QLGV 238
              V
Sbjct: 234 NFSV 237

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW48|ERF5_NICSY Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1

 Score =  172 bits (435), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 101/224 (45%), Positives = 141/224 (62%), Gaps = 22/224 (9%)

Query: 19  ISQYLLNDLTPMDSYSFISNLPQQNPASTDEQILVQKTSSTLSQRKPSSINVRIPPPTTS 78
           +S +  N  T  DS+ F   +P  + A +     +++TS    +RKPS +N+ IP     
Sbjct: 72  VSTFFNNSKTEFDSFEF-GTIPNVSAARSSS---LKQTS--FKERKPS-LNIAIP----- 119

Query: 79  IFRLKDED-KDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAA 137
              +K E  + +E+A   K +HYRGVR+RPWGK+AAEIRDPN+KGTRVWLGTF+TA+EAA
Sbjct: 120 ---VKQEVVQKVELAPTEK-KHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAA 175

Query: 138 KAYDNAAFKMRGRKAILNFPLEIGEISLD-SDEVQQVDCGKKRKYEENEEFERKVAVKKE 196
           KAYD AA+K+RG KAI+NFPLE+     + ++E++ +    +++  E    E+ V  K+ 
Sbjct: 176 KAYDRAAYKLRGSKAIVNFPLEVANFKQEFNNEIRPLVNSSRKRVRETVNEEQLVINKEM 235

Query: 197 ETVSGGVGLGPLTPSSWTGFWD--DGNGIFSVPPLSP--CFGQL 236
           +     V   PLTPSSW+  WD  DG GIF VPPLSP   + QL
Sbjct: 236 KIEEERVPTAPLTPSSWSAIWDSGDGKGIFEVPPLSPFGAYSQL 279

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator.

Nicotiana sylvestris (taxid: 4096)

>sp|O80341|EF102_ARATH Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1

 Score =  135 bits (339), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/179 (45%), Positives = 112/179 (62%), Gaps = 14/179 (7%)

Query: 61  SQRKPSSINVRIPPPTTSIFRLKDEDKDLEVADDYKE---RHYRGVRRRPWGKYAAEIRD 117
           SQ +   + + +P  T  I +   E+   EV     E   +HYRGVR+RPWGK+AAEIRD
Sbjct: 115 SQIRKPPLKISLPAKTEWI-QFAAENTKPEVTKPVSEEEKKHYRGVRQRPWGKFAAEIRD 173

Query: 118 PNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVDCGK 177
           PNK+G+RVWLGTF+TA+EAA+AYD AAF++RG KAILNFPLE+G+    +DE +     K
Sbjct: 174 PNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPLEVGKWKPRADEGE-----K 228

Query: 178 KRKYEENEE---FERKVAVKKEETVSGGVGLGPLTPSSWTGFWD-DGNGIFSVPPLSPC 232
           KRK +++E+    E+ +  ++   V+GG    P   S+ T   D D  G  + P LSP 
Sbjct: 229 KRKRDDDEKVTVVEKVLKTEQSVDVNGGETF-PFVTSNLTELCDWDLTGFLNFPLLSPL 286

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LY05|EF106_ARATH Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1

 Score =  123 bits (308), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/200 (41%), Positives = 113/200 (56%), Gaps = 33/200 (16%)

Query: 12  EALTLERISQYLLNDLTPMDSY--------SFISNL-------PQQNPAS--TDEQILVQ 54
           E+  LE I  +LL DL   D +        SF+S L       P+Q P S   D    V 
Sbjct: 6   ESSDLEAIQSHLLEDLLVCDGFMGDFDFDASFVSGLWCIEPHVPKQEPDSPVLDPDSFVN 65

Query: 55  KTSSTLSQRKPSSINVRIPPPTTSIFRLKDEDKDLEVADDYKE----RHYRGVRRRPWGK 110
           +      +   SS        +T      + D+ ++ A+ ++E    RHYRGVRRRPWGK
Sbjct: 66  EFLQVEGESSSSSSPELNSSSSTY-----ETDQSVKKAERFEEEVDARHYRGVRRRPWGK 120

Query: 111 YAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEV 170
           +AAEIRDP KKG+R+WLGTF + V+AA+AYD AAFK+RGRKA+LNFPL+ G+    ++  
Sbjct: 121 FAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPANS- 179

Query: 171 QQVDCGKKRKYEE-NEEFER 189
                G+KRK  + +EE +R
Sbjct: 180 -----GRKRKRSDVHEELQR 194

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZ91|EF103_ARATH Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2

 Score =  122 bits (305), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/211 (42%), Positives = 118/211 (55%), Gaps = 32/211 (15%)

Query: 31  DSYSFISNLPQQNPASTDEQILVQKTSSTLSQRKPSSINVRIPPPTTSI---FRLKDEDK 87
           DS++F SN P+         + VQ      S RKP    ++I PP  +    F   +   
Sbjct: 81  DSFTFQSNPPR---------VTVQ------SNRKPP---LKIAPPNRTKWIQFATGNPKP 122

Query: 88  DLEVADDYKE--RHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAF 145
           +L V     E  RHYRGVR RPWGK+AAEIRDP ++GTRVWLGTF TA+EAA+AYD  AF
Sbjct: 123 ELPVPVVAAEEKRHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAF 182

Query: 146 KMRGRKAILNFPLEIGEISLDSDEVQQVDCGKKRKYEENEEFERKVAVKKEET--VSGG- 202
           ++RG KAILNFPLE+ + +  +++ + +   +KR  EE E    +  +K EE+  VSGG 
Sbjct: 183 RLRGSKAILNFPLEVDKWNPRAEDGRGLYNKRKRDGEEEEVTVVEKVLKTEESYDVSGGE 242

Query: 203 -VGLGPLTPSSWTGFWDDGNGIFSVPPLSPC 232
            V  G      W     D     S+P LSP 
Sbjct: 243 NVESGLTAIDDW-----DLTEFLSMPLLSPL 268

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40479|ERF2_TOBAC Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1

 Score =  110 bits (275), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 54/88 (61%), Positives = 63/88 (71%), Gaps = 5/88 (5%)

Query: 96  KERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILN 155
           K RHYRGVR+RPWGK+AAEIRDP K G RVWLGT+ TA EAA AYD AA++MRG KA+LN
Sbjct: 95  KGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLN 154

Query: 156 FPLEIGEISLDSDEVQQVDCGKKRKYEE 183
           FP  IG      +E + V    KR+  E
Sbjct: 155 FPHRIG-----LNEPEPVRLTAKRRSPE 177

Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

>sp|Q9LW50|ERF2_NICSY Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1

 Score =  110 bits (274), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 49/66 (74%), Positives = 55/66 (83%)

Query: 96  KERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILN 155
           K RHYRGVR+RPWGK+AAEIRDP K G RVWLGT+ TA EAA AYD AA++MRG KA+LN
Sbjct: 99  KGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLN 158

Query: 156 FPLEIG 161
           FP  IG
Sbjct: 159 FPHRIG 164

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator.

Nicotiana sylvestris (taxid: 4096)

>sp|O80337|EF100_ARATH Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2

 Score =  108 bits (271), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 56/110 (50%), Positives = 68/110 (61%), Gaps = 7/110 (6%)

Query: 96  KERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILN 155
           K +HYRGVR+RPWGK+AAEIRDP K G RVWLGTF TA +AA AYD AAF+MRG +A+LN
Sbjct: 144 KGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLN 203

Query: 156 FPLEIGEISLDSDEVQQVDCGKKRKYEENEEFERKVAVKKEETVSGGVGL 205
           FPL +     D   ++          E         A KK  TV+ G G+
Sbjct: 204 FPLRVNSGEPDPVRIKSKRSSFSSSNENG-------APKKRRTVAAGGGM 246

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
387169519	223	hypothetical protein 11M19.26 [Arabidops	0.870	0.932	0.469	2e-46
18423250	221	ethylene-responsive transcription factor	0.849	0.918	0.472	1e-45
21592411	221	contains similarity to ethylene responsi	0.849	0.918	0.472	2e-45
449488627	255	PREDICTED: ethylene-responsive transcrip	0.887	0.831	0.489	4e-45
297795923	221	hypothetical protein ARALYDRAFT_495189 [	0.782	0.846	0.488	1e-44
297797121	244	hypothetical protein ARALYDRAFT_496327 [	0.916	0.897	0.471	1e-44
224057956	287	AP2/ERF domain-containing transcription	0.895	0.745	0.473	2e-44
155369214	296	transcription factor DcERF1 [Daucus caro	0.866	0.699	0.468	5e-44
306476397	219	ethylene response factor 56 [Brassica na	0.824	0.899	0.461	1e-43
224112801	288	AP2/ERF domain-containing transcription	0.782	0.649	0.518	2e-43

>gi|387169519|gb|AFJ66180.1| hypothetical protein 11M19.26 [Arabidopsis halleri]

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 115/245 (46%), Positives = 145/245 (59%), Gaps = 37/245 (15%)

Query: 1   MAAGHHHHQDHEALTLERISQYLLNDLTPMDSYSFISNLPQQNPASTDEQILVQKTSSTL 60
           MA+ H   Q+ +   L+ ISQ+LL D + +D+  F+S++                T+STL
Sbjct: 1   MASSHQQQQEQDQSALDLISQHLLTDFSSLDT--FVSSIQHC-------------TTSTL 45

Query: 61  SQRKPSSINVRIPPPTTSIFRLKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNK 120
           SQRKP    + +P    +I  +  ED          +RHYRGVRRRPWGKYAAEIRDPNK
Sbjct: 46  SQRKPPLATIAVP----TIAPVAQEDD---------QRHYRGVRRRPWGKYAAEIRDPNK 92

Query: 121 KGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVDCGKKRK 180
           KG RVWLGTF+TA+EAA+ YD AAFK+RG KAILNFPLE G+     D  + V    KRK
Sbjct: 93  KGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFPLEAGKYEDYRDSSKTVSLKPKRK 152

Query: 181 YEENEE---FERKVAVKKEET-VSGGVGLGPLTPSSWTGFWDDGNG----IFSVPPLSPC 232
            +  E+        AVK+EE  +     + PLTPSSW GFWD  +     IFSVPPLSP 
Sbjct: 153 RQVTEDESHLSSNKAVKREEAEIQAQAEVCPLTPSSWMGFWDGEDSKEMRIFSVPPLSP- 211

Query: 233 FGQLG 237
           +  LG
Sbjct: 212 YPSLG 216

Source: Arabidopsis halleri

Species: Arabidopsis halleri

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18423250|ref|NP_568755.1| ethylene-responsive transcription factor ERF105 [Arabidopsis thaliana] gi|75248477|sp|Q8VY90.1|EF105_ARATH RecName: Full=Ethylene-responsive transcription factor ERF105 gi|18252239|gb|AAL61952.1| putative protein [Arabidopsis thaliana] gi|21387011|gb|AAM47909.1| putative protein [Arabidopsis thaliana] gi|332008667|gb|AED96050.1| ethylene-responsive transcription factor ERF105 [Arabidopsis thaliana]

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 113/239 (47%), Positives = 140/239 (58%), Gaps = 36/239 (15%)

Query: 1   MAAGHHHHQDHEALTLERISQYLLNDLTPMDSYSFISNLPQQNPASTDEQILVQKTSSTL 60
           MA+ H   Q+ +   L+ I+Q+LL D   +D++           AST        T+STL
Sbjct: 1   MASSHQQQQEQDQSALDLITQHLLTDFPSLDTF-----------ASTIHHC----TTSTL 45

Query: 61  SQRKPSSINVRIPPPTTSIFRLKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNK 120
           SQRKP    + +P  TT+            V  +  +RHYRGVRRRPWGKYAAEIRDPNK
Sbjct: 46  SQRKPPLATIAVP--TTA-----------PVVQENDQRHYRGVRRRPWGKYAAEIRDPNK 92

Query: 121 KGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVDCGKKRK 180
           KG RVWLGTF+TA+EAA+ YD AAFK+RG KAILNFPLE G+     D  + +    KRK
Sbjct: 93  KGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFPLEAGKHEDLGDNKKTISLKAKRK 152

Query: 181 ---YEENEEFERKVAVKKEETVSGGVGLGPLTPSSWTGFWDDGN----GIFSVPPLSPC 232
               E+  +   + AVK+EE         PLTPSSW GFWD  +    GIFSVP LSPC
Sbjct: 153 RQVTEDESQLISRKAVKREEAQVQADAC-PLTPSSWKGFWDGADSKDMGIFSVPLLSPC 210

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592411|gb|AAM64362.1| contains similarity to ethylene responsive element binding factor [Arabidopsis thaliana]

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 113/239 (47%), Positives = 141/239 (58%), Gaps = 36/239 (15%)

Query: 1   MAAGHHHHQDHEALTLERISQYLLNDLTPMDSYSFISNLPQQNPASTDEQILVQKTSSTL 60
           MA+ H   Q+ +   L+ I+Q+LL D   +D++           AST        T+STL
Sbjct: 1   MASSHQQQQEQDQSALDLITQHLLTDFPSLDTF-----------ASTIHHC----TTSTL 45

Query: 61  SQRKPSSINVRIPPPTTSIFRLKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNK 120
           SQRKP    + +P  TT+            V  +  +RHYRGVRRRPWGKYAAEIRDPNK
Sbjct: 46  SQRKPPLATIAVP--TTA-----------PVVQENDQRHYRGVRRRPWGKYAAEIRDPNK 92

Query: 121 KGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVDCGKKRK 180
           KG RVWLGTF+TA+EAA+ YD AAFK+RG KAILNFPLE G+     D  + +    KRK
Sbjct: 93  KGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFPLEAGKHEDLGDNKKTISLKAKRK 152

Query: 181 YEENEEFERKV---AVKKEETVSGGVGLGPLTPSSWTGFWDDGN----GIFSVPPLSPC 232
            +  E+  + +   AVK+EE         PLTPSSW GFWD  +    GIFSVP LSPC
Sbjct: 153 RQVTEDESQLISHKAVKREEAQVQADAC-PLTPSSWKGFWDGADSKDMGIFSVPLLSPC 210

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449488627|ref|XP_004158119.1| PREDICTED: ethylene-responsive transcription factor 5-like [Cucumis sativus]

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 112/229 (48%), Positives = 149/229 (65%), Gaps = 17/229 (7%)

Query: 12  EALTLERISQYLLNDLTPMDSYSFISNLPQQNPASTDEQILVQKTSSTLSQRKPSSINVR 71
           +A TL+ I Q+LLND   +++  F SNL   + +  + QI    T S ++ R+PS +NV 
Sbjct: 3   DASTLDLIRQHLLNDFNSIEA--FASNLNFDHNSGVNSQI-SSPTPSKVAPRRPS-LNVA 58

Query: 72  IPPPTTSIFRLKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFN 131
           IPP + S+    +   + + +D    RHYRGVRRRPWGK+AAEIRDP K+G RVWLGT++
Sbjct: 59  IPPKSISVGSAVETSIEAK-SDVGVSRHYRGVRRRPWGKFAAEIRDPAKRGARVWLGTYD 117

Query: 132 TAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQV-DCGKKRKYE---ENEEF 187
           TA+EAAKAYD AAF+MRG KAILNFPLE G+   D ++ Q   D G+KR+ E   E  E 
Sbjct: 118 TAIEAAKAYDRAAFRMRGSKAILNFPLEAGK---DVEDPQSTSDVGRKRRRESESEVVEM 174

Query: 188 ERKVAVKKEETVSGGVG----LGPLTPSSWTGFWD-DGNGIFSVPPLSP 231
            +K   K+E + +  +G    + PLTPS W   WD DG GIF+VPPLSP
Sbjct: 175 GKKEMKKEERSETEEIGVPTTVCPLTPSCWASVWDSDGKGIFNVPPLSP 223

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297795923|ref|XP_002865846.1| hypothetical protein ARALYDRAFT_495189 [Arabidopsis lyrata subsp. lyrata] gi|297311681|gb|EFH42105.1| hypothetical protein ARALYDRAFT_495189 [Arabidopsis lyrata subsp. lyrata]

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 109/223 (48%), Positives = 134/223 (60%), Gaps = 36/223 (16%)

Query: 16  LERISQYLLNDLTPMDSYSFISNLPQQNPASTDEQILVQKTSSTLSQRKPSSINVRIPPP 75
           L+ I+Q+LL D   +++  F+S +                T+STLSQRKP    + +P  
Sbjct: 16  LDLITQHLLTDFPSLET--FVSTIHHC-------------TTSTLSQRKPPLATIAVP-- 58

Query: 76  TTSIFRLKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVE 135
           TT             VA +  +RHYRGVRRRPWGKYAAEIRDPN+KG RVWLGTF+TA+E
Sbjct: 59  TTG-----------PVAQEDDQRHYRGVRRRPWGKYAAEIRDPNRKGVRVWLGTFDTAME 107

Query: 136 AAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVDCGKKRKYEENEE---FERKVA 192
           AA+ YD AAFK+RG KAILNFPLE G+     D  + V    KRK +  E+        A
Sbjct: 108 AARGYDKAAFKLRGSKAILNFPLEAGKHEDLGDNNKTVSLKAKRKRQVTEDVSHLSSHKA 167

Query: 193 VKKEETVSGGVGLGPLTPSSWTGFWDDGN----GIFSVPPLSP 231
           VK+EET +      PLTPSSW GFWD  +    GIFSVPPLSP
Sbjct: 168 VKREETQAQADAC-PLTPSSWMGFWDGADSKEMGIFSVPPLSP 209

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797121|ref|XP_002866445.1| hypothetical protein ARALYDRAFT_496327 [Arabidopsis lyrata subsp. lyrata] gi|297312280|gb|EFH42704.1| hypothetical protein ARALYDRAFT_496327 [Arabidopsis lyrata subsp. lyrata]

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/244 (47%), Positives = 149/244 (61%), Gaps = 25/244 (10%)

Query: 11  HEALTLERISQYLLNDLTPMDS-YSFISNLPQQNPASTDEQILVQ---KTSSTLSQRKPS 66
            EAL +E ISQ+LL D   M++  S  +N      + T  + +     K +STL+QRKP 
Sbjct: 8   QEALAIEFISQHLLTDFASMETDPSLFTNQVHNFHSETSPRTISNQSPKPNSTLNQRKPP 67

Query: 67  SINVRIPPPTTSIFRLKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVW 126
             N+ +P       R+     +    ++ +ERHYRGVRRRPWGKYAAEIRDPNKKG+R+W
Sbjct: 68  LPNLPVP-------RMVSTKTE---KEEEEERHYRGVRRRPWGKYAAEIRDPNKKGSRIW 117

Query: 127 LGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVDCGKKRKYEEN-- 184
           LGT++TAVEAA+AYD AAF++RGRKAILNFPL+I   S    E   V  G++++ + +  
Sbjct: 118 LGTYDTAVEAARAYDQAAFQLRGRKAILNFPLDIRATSETCFEEGAVGLGQRKRVKSSPP 177

Query: 185 EEFERKVAVK-------KEETVSGGVGLGPLTPSSWTGFWD--DGNGIFSVPPLSPCFGQ 235
           EE + KV VK         ET    V   PLTPSSW GFWD   G+GIFS+PPLSP    
Sbjct: 178 EEEKEKVRVKVEEEESNTSETTEAEVEAVPLTPSSWMGFWDVGAGDGIFSIPPLSPTSPN 237

Query: 236 LGVC 239
             V 
Sbjct: 238 FSVI 241

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057956|ref|XP_002299408.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222846666|gb|EEE84213.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/266 (47%), Positives = 151/266 (56%), Gaps = 52/266 (19%)

Query: 10  DHEALTLERISQYLLNDLTPMDSYSFISNL-----------------------------P 40
           DHEA TLE I Q+LL D   MDS  FISNL                             P
Sbjct: 5   DHEASTLELIRQHLLTDFASMDS--FISNLDDLCSTSTTSTTDDYYIKSESTEFDPFDQP 62

Query: 41  Q-----QNPASTDEQILVQKTSSTLSQRKPSSI-NVRIPPPTTSIFRLKDEDKDLEVAD- 93
           Q     Q+   +  Q    K+S++LSQRKPS I ++ IPPP T     +     +   D 
Sbjct: 63  QFKLQTQSSIESKPQYSSPKSSTSLSQRKPSMIKDIAIPPPATLNMNPQVAQPVVNKTDL 122

Query: 94  -DYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKA 152
              ++RHYRGVRRRPWGKYAAEIRDPNKKG RVWLGTF+TA+EAAKAYD+AAF++RG KA
Sbjct: 123 SSEQDRHYRGVRRRPWGKYAAEIRDPNKKGARVWLGTFDTAIEAAKAYDSAAFRLRGSKA 182

Query: 153 ILNFPLEIGEI-SLDSDEVQQVDCGKKRKYE------ENEEFERKVAVKKE----ETVSG 201
           ILNFPLE G+  S   ++  +  C KKRK+E      E         VK+E    E+   
Sbjct: 183 ILNFPLEAGKSNSQQPEQFLETSC-KKRKFEGIKSSVEGTNSITNKVVKRETSSPESEVK 241

Query: 202 GVGLGPLTPSSWTGFWD-DGNGIFSV 226
            V  GPLTPSSW GFWD +  GIFSV
Sbjct: 242 AVASGPLTPSSWKGFWDGETMGIFSV 267

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|155369214|dbj|BAF75651.1| transcription factor DcERF1 [Daucus carota]

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 105/224 (46%), Positives = 139/224 (62%), Gaps = 17/224 (7%)

Query: 19  ISQYLLNDLTPMDSYSFISNLPQQNPASTDEQILVQKT-SSTLSQRKPSSINVRIPPPTT 77
           +S    N+   +DSY   S+    N  S      +++T SS+ S+RKP+ +N+ +PP + 
Sbjct: 56  VSDLTFNNNVAVDSYVAGSHDATLNHFSFQPNSAIKRTNSSSFSERKPT-LNIAVPPASK 114

Query: 78  SIFRLKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAA 137
             F+   +  D  VAD  ++RHYRGVR+RPWGK+AAEIRDPN+KG+RVWLGTF+TA++AA
Sbjct: 115 VGFQPAAKLSDRRVADSGEKRHYRGVRQRPWGKFAAEIRDPNRKGSRVWLGTFDTAIDAA 174

Query: 138 KAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVDCGKKRKYEENEEFERKVAVKKEE 197
           KAYD AAF++RG KAILNFP EI +    S  V  +  G+KR  E   E ER++   K E
Sbjct: 175 KAYDRAAFRLRGSKAILNFPHEIAQSPETSPPVSNI--GRKRVKENKAEQEREI---KRE 229

Query: 198 TVSG-------GVGLGPLTPSSWTGFWDDG---NGIFSVPPLSP 231
            VS          G  PLTPS WT  W+ G    GIF +PPLSP
Sbjct: 230 KVSADSNCEVVAAGACPLTPSMWTEVWEGGEEKGGIFEIPPLSP 273

Source: Daucus carota

Species: Daucus carota

Genus: Daucus

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|306476397|gb|ADM89080.1| ethylene response factor 56 [Brassica napus]

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 108/234 (46%), Positives = 139/234 (59%), Gaps = 37/234 (15%)

Query: 11  HEALTLERISQYLLNDLTPMDSYSFISNLPQ----QNPASTDEQILVQKTSSTLSQRKPS 66
            EAL +E ISQ+LL D    D +      P+     NP          K +STL++RKP 
Sbjct: 5   QEALAIEFISQHLLADFASQDHHLHSETTPRTIGNHNP----------KPNSTLNRRKPP 54

Query: 67  SINVRIPPPTTSIFRLKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVW 126
             N+ +P  +T           ++  ++ ++RHYRGVRRRPWGKYAAEIRDPNKKG+R+W
Sbjct: 55  LPNLSVPVSST-----------MKKPEEEEKRHYRGVRRRPWGKYAAEIRDPNKKGSRLW 103

Query: 127 LGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVDCGKKRKY----- 181
           LGT++TAVEAA+AYD AAF++RGRKAILNFPL++   S    E   V  GK+++      
Sbjct: 104 LGTYDTAVEAARAYDLAAFELRGRKAILNFPLDVRATS----ESCFVGLGKRKRLKSFVA 159

Query: 182 -EENEEFERKVAVKKEETVSGGVGLGPLTPSSWTGFWD--DGNGIFSVPPLSPC 232
            EE      K   K+  T    V   PLTPSSW G WD   G+GIFSVPPL+P 
Sbjct: 160 EEETVPVRVKAEAKESYTTVAEVEAVPLTPSSWKGVWDVGAGDGIFSVPPLTPT 213

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112801|ref|XP_002332694.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222832948|gb|EEE71425.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  181 bits (460), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/212 (51%), Positives = 129/212 (60%), Gaps = 25/212 (11%)

Query: 30  MDSYSFISNLPQQNPASTDEQILVQKTSSTLSQRKPSSI-NVRIPPPTTSIFRLKDEDKD 88
           + S S I + PQ +P          K+ STLSQRKPS I N+ IPPP T     +     
Sbjct: 67  LQSQSSIESKPQSSP----------KSPSTLSQRKPSMIKNIAIPPPATLNMTPQVVQPV 116

Query: 89  LEVAD--DYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFK 146
           +  AD    +ERHYRGVRRRPWGKYAAEIRDPNKKG RVWLGTF+TA+EAAKAYD+AAF+
Sbjct: 117 VIKADVSSEQERHYRGVRRRPWGKYAAEIRDPNKKGARVWLGTFDTAIEAAKAYDSAAFR 176

Query: 147 MRGRKAILNFPLEIGEISLDSDEVQQVDCGKKRKYEENEE--------FERKVAVKKE-- 196
           +RG KAILNFPLE G+ +    E       KKRK EE E            KVA ++   
Sbjct: 177 LRGSKAILNFPLEAGKSNSQQPEQFLETSSKKRKIEEIESSMESTGSVITNKVAKRESSS 236

Query: 197 -ETVSGGVGLGPLTPSSWTGFWD-DGNGIFSV 226
            ET        PLTPSSW GFWD +  GIF+V
Sbjct: 237 PETEVKAAATEPLTPSSWKGFWDGEVMGIFNV 268

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
TAIR|locus:2151591	241	ERF104 "ethylene response fact	0.874	0.867	0.478	3.1e-44
TAIR|locus:2176187	221	AT5G51190 [Arabidopsis thalian	0.682	0.737	0.538	6.6e-42
TAIR|locus:2171529	300	ERF5 "ethylene responsive elem	0.677	0.54	0.451	6.3e-35
TAIR|locus:2129106	282	ERF6 "AT4G17490" [Arabidopsis	0.836	0.709	0.402	4.4e-29
TAIR|locus:2151576	201	AT5G61590 [Arabidopsis thalian	0.489	0.582	0.5	1.8e-25
TAIR|locus:2129116	268	ERF-1 "ethylene responsive ele	0.606	0.541	0.417	7.6e-25
TAIR|locus:2038500	244	ORA59 "octadecanoid-responsive	0.556	0.545	0.429	4.2e-24
UNIPROTKB|Q5MFV1	303	BIERF3 "BTH-induced ERF transc	0.376	0.297	0.585	1.4e-23
TAIR|locus:2171514	243	ERF2 "ethylene responsive elem	0.359	0.353	0.579	3.8e-23
TAIR|locus:2086213	139	TDR1 "Transcriptional Regulato	0.284	0.489	0.676	9e-22

TAIR|locus:2151591 ERF104 "ethylene response factor 104" [Arabidopsis thaliana (taxid:3702)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 113/236 (47%), Positives = 142/236 (60%)

Query:    12 EALTLERISQYLLNDLTPM--DSYSFISNLPQQNPASTDEQILVQ---KTSSTLSQRKPS 66
             EAL ++ ISQ+LL D   M  D  S  +N      + T  + +     K +STL+QRKP 
Sbjct:     6 EALAIDFISQHLLTDFVSMETDHPSLFTNQLHNFHSETGPRTITNQSPKPNSTLNQRKP- 64

Query:    67 SINVRIPPPTTSIFRLKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVW 126
                   P P  S+ R      + E     +ERHYRGVRRRPWGKYAAEIRDPNKKG R+W
Sbjct:    65 ------PLPNLSVSRTVSTKTEKEE----EERHYRGVRRRPWGKYAAEIRDPNKKGCRIW 114

Query:   127 LGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVDCGKKRKYEENEE 186
             LGT++TAVEA +AYD AAF++RGRKAILNFPL++   S        +  GK+++ + +  
Sbjct:   115 LGTYDTAVEAGRAYDQAAFQLRGRKAILNFPLDVRVTSETCSGEGVIGLGKRKRDKGSPP 174

Query:   187 FERKVA-VKKEE-------TVSGGVG-LGPLTPSSWTGFWD--DGNGIFSVPPLSP 231
              E K A VK EE       T    V  + PLTPSSW GFWD   G+GIFS+PPLSP
Sbjct:   175 EEEKAARVKVEEEESNTSETTEAEVEPVVPLTPSSWMGFWDVGAGDGIFSIPPLSP 230

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2176187 AT5G51190 [Arabidopsis thaliana (taxid:3702)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 99/184 (53%), Positives = 118/184 (64%)

Query:    56 TSSTLSQRKPSSINVRIPPPTTSIFRLKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEI 115
             T+STLSQRKP    + +P  TT+            V  +  +RHYRGVRRRPWGKYAAEI
Sbjct:    41 TTSTLSQRKPPLATIAVP--TTA-----------PVVQENDQRHYRGVRRRPWGKYAAEI 87

Query:   116 RDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVDC 175
             RDPNKKG RVWLGTF+TA+EAA+ YD AAFK+RG KAILNFPLE G+     D  + +  
Sbjct:    88 RDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFPLEAGKHEDLGDNKKTISL 147

Query:   176 GKKRKYEENEEFERKV---AVKKEETVSGGVGLGPLTPSSWTGFWDDGN----GIFSVPP 228
               KRK +  E+  + +   AVK+EE         PLTPSSW GFWD  +    GIFSVP 
Sbjct:   148 KAKRKRQVTEDESQLISRKAVKREEAQVQADAC-PLTPSSWKGFWDGADSKDMGIFSVPL 206

Query:   229 LSPC 232
             LSPC
Sbjct:   207 LSPC 210

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2171529 ERF5 "ethylene responsive element binding factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 354 (129.7 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
 Identities = 79/175 (45%), Positives = 115/175 (65%)

Query:    63 RKPSSINVRIPPPTTSI-FRLKDEDKDL-EVADDYKERHYRGVRRRPWGKYAAEIRDPNK 120
             RKP  + + +P  T  I F  ++   ++ +   + +++HYRGVR+RPWGK+AAEIRDPNK
Sbjct:   118 RKPP-LKISLPAKTEWIQFAAENTKPEVTKPVSEEEKKHYRGVRQRPWGKFAAEIRDPNK 176

Query:   121 KGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVDCGKKRK 180
             +G+RVWLGTF+TA+EAA+AYD AAF++RG KAILNFPLE+G+    +DE +     KKRK
Sbjct:   177 RGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPLEVGKWKPRADEGE-----KKRK 231

Query:   181 YEENEEF---ERKVAVKKEETVSGGVGLGPLTPSSWTGFWD-DGNGIFSVPPLSP 231
              +++E+    E+ +  ++   V+GG    P   S+ T   D D  G  + P LSP
Sbjct:   232 RDDDEKVTVVEKVLKTEQSVDVNGGETF-PFVTSNLTELCDWDLTGFLNFPLLSP 285

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2129106 ERF6 "AT4G17490" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 89/221 (40%), Positives = 127/221 (57%)

Query:    23 LLNDLTPMDSYSFISNLPQQNPASTDEQILVQKTSSTL---SQRKPSSINVRIPPP--TT 77
             +++ +TP     F  ++  + P+ +++    Q     +   S RKP    ++I PP  T 
Sbjct:    56 IIDLVTPKPEI-FDFDVKSEIPSESNDSFTFQSNPPRVTVQSNRKPP---LKIAPPNRTK 111

Query:    78 SI-FRLKDEDKDLEV---ADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTA 133
              I F   +   +L V   A + K RHYRGVR RPWGK+AAEIRDP ++GTRVWLGTF TA
Sbjct:   112 WIQFATGNPKPELPVPVVAAEEK-RHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETA 170

Query:   134 VEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDEVQQVDCGKKRKYEENEEFERKVAV 193
             +EAA+AYD  AF++RG KAILNFPLE+ + +  +++ + +   +KR  EE E    +  +
Sbjct:   171 IEAARAYDKEAFRLRGSKAILNFPLEVDKWNPRAEDGRGLYNKRKRDGEEEEVTVVEKVL 230

Query:   194 KKEET--VSGGVGLGPLTPSSWTGFWD-DGNGIFSVPPLSP 231
             K EE+  VSGG  +     S  T   D D     S+P LSP
Sbjct:   231 KTEESYDVSGGENV----ESGLTAIDDWDLTEFLSMPLLSP 267

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0000302 "response to reactive oxygen species" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0009644 "response to high light intensity" evidence=IMP

TAIR|locus:2151576 AT5G61590 [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 63/126 (50%), Positives = 81/126 (64%)

Query:    39 LPQQNPAST--DEQILVQKTSSTLSQRKPSSINVRIPPPTTSIFRLKDEDKDLEVADDYK 96
             +P+  P+S   D    VQ+     ++   SS     P   T   R K   K  E     +
Sbjct:    51 VPKLEPSSPVLDPDSYVQEILQMEAESSSSSSTTTSPEVETVSNRKKT--KRFE-----E 103

Query:    97 ERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNF 156
              RHYRGVRRRPWGK+AAEIRDP KKG+R+WLGTF + ++AA+AYD AAFK+RGRKA+LNF
Sbjct:   104 TRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNF 163

Query:   157 PLEIGE 162
             PL+ G+
Sbjct:   164 PLDAGK 169

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009414 "response to water deprivation" evidence=IEP

TAIR|locus:2129116 ERF-1 "ethylene responsive element binding factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 66/158 (41%), Positives = 93/158 (58%)

Query:    54 QKTSSTLSQRKPSSINVRIPPPTT-----SIFRLKDEDKDLEVA-DDYKERHYRGVRRRP 107
             + +SS+  + + S  +V+I  P +     S+   K++   +  A    K +HYRGVR+RP
Sbjct:    96 EPSSSSSDEDRSSFPSVKIETPESFAAVDSVPVKKEKTSPVSAAVTAAKGKHYRGVRQRP 155

Query:   108 WGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDS 167
             WGK+AAEIRDP K G RVWLGTF TA +AA AYD AAF+MRG +A+LNFPL +     D 
Sbjct:   156 WGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRVNSGEPDP 215

Query:   168 DEVQQVDCGKKRKYEENEEFERKVAVKKEETVSGGVGL 205
               ++     K+  +  + E     A KK  TV+ G G+
Sbjct:   216 VRIKS----KRSSFSSSNE---NGAPKKRRTVAAGGGM 246

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0005643 "nuclear pore" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2038500 ORA59 "octadecanoid-responsive Arabidopsis AP2/ERF 59" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 58/135 (42%), Positives = 84/135 (62%)

Query:    82 LKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYD 141
             +K+E K+  VA + +E+ YRGVR+RPWGK+AAEIRD  +KG RVWLGTF+TA  AA AYD
Sbjct:    64 IKEEGKEATVAAEEEEKSYRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAYD 123

Query:   142 NAAFKMRGRKAILNFPLEIGEISLDSDEVQQVDCGKKR--KYEENEEFERKVAVKKEETV 199
              AAF ++G  A+LNFP ++ E SL   E   ++ G+      +       +   KK+ + 
Sbjct:   124 QAAFALKGSLAVLNFPADVVEESLRKMENVNLNDGESPVIALKRKHSMRNRPRGKKKSSS 183

Query:   200 SGGVGLGPLTPSSWT 214
             S  +   P + SS++
Sbjct:   184 SSTLTSSPSSSSSYS 198

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009861 "jasmonic acid and ethylene-dependent systemic resistance" evidence=IMP

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

UNIPROTKB|Q5MFV1 BIERF3 "BTH-induced ERF transcriptional factor 3" [Oryza sativa Indica Group (taxid:39946)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 55/94 (58%), Positives = 68/94 (72%)

Query:    91 VADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGR 150
             VA   + +HYRGVR+RPWGK+AAEIRDP K G RVWLGTF++A EAA AYD AA++MRG 
Sbjct:   140 VAVASRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFDSAEEAAVAYDRAAYRMRGS 199

Query:   151 KAILNFPLEIG-EISLDSDEVQQVDCGKKRKYEE 183
             +A+LNFPL IG EI+  +        G KR Y +
Sbjct:   200 RALLNFPLRIGSEIAAAAAAAA---AGNKRPYPD 230

GO:0009620 "response to fungus" evidence=IC

TAIR|locus:2171514 ERF2 "ethylene responsive element binding factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 51/88 (57%), Positives = 66/88 (75%)

Query:    75 PTTSIFRLKDEDKD-LEVADD-YKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNT 132
             PT +   ++++ K  + V +   K +HYRGVR+RPWGK+AAEIRDP K G RVWLGTF T
Sbjct:    90 PTENFTAMEEKPKKAIPVTETAVKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFET 149

Query:   133 AVEAAKAYDNAAFKMRGRKAILNFPLEI 160
             A +AA AYD AAF+MRG +A+LNFPL +
Sbjct:   150 AEDAALAYDIAAFRMRGSRALLNFPLRV 177

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2086213 TDR1 "Transcriptional Regulator of Defense Response 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 46/68 (67%), Positives = 55/68 (80%)

Query:    92 ADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRK 151
             + D K+  +RGVRRRPWGK+AAEIRDP++ G R+WLGTF TA EAA+AYD AAF +RG  
Sbjct:    12 SQDDKQARFRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHL 71

Query:   152 AILNFPLE 159
             AILNFP E
Sbjct:    72 AILNFPNE 79

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VY90	EF105_ARATH	No assigned EC number	0.4728	0.8493	0.9185	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	239
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	4e-34
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	3e-31
pfam00847	53	pfam00847, AP2, AP2 domain	2e-14

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  116 bits (294), Expect = 4e-34
 Identities = 45/59 (76%), Positives = 49/59 (83%), Gaps = 1/59 (1%)

Query: 99  HYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP 157
            YRGVR+RPWGK+ AEIRDP  KG RVWLGTF+TA EAA+AYD AAFK RGR A LNFP
Sbjct: 1   KYRGVRQRPWGKWVAEIRDP-SKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFP 58

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  109 bits (274), Expect = 3e-31
 Identities = 41/59 (69%), Positives = 48/59 (81%), Gaps = 1/59 (1%)

Query: 99  HYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP 157
            YRGVR+RPWGK+ AEIRDP   G R+WLGTF+TA EAA+AYD AA K+RG  A+LNFP
Sbjct: 2   KYRGVRQRPWGKWVAEIRDP-SGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFP 59

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 65.0 bits (159), Expect = 2e-14
 Identities = 28/53 (52%), Positives = 33/53 (62%), Gaps = 3/53 (5%)

Query: 99  HYRGVRRRP-WGKYAAEIRDP-NKKGTRVWLGTFNTAVEAAKAYDNAAFKMRG 149
            Y+GVR    WG++ AEIRDP  KK  R  LGTF T  EAA+A   A  K+RG
Sbjct: 2   GYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGTE-EAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	239
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.84
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.84
PHA00280	121	putative NHN endonuclease	99.57
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.24
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	81.46

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.84  E-value=4.5e-21  Score=136.98  Aligned_cols=61  Identities=67%  Similarity=1.225  Sum_probs=56.8

Q ss_pred             ceeeeeEECCCCeeEEEEecCCCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 026385           98 RHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLE  159 (239)
Q Consensus        98 S~YRGV~~r~~GKW~A~I~~~~~~Gkri~LGtFdT~EEAArAYD~AA~kl~G~~A~lNFp~s  159 (239)
                      |+|+||+++++|||+|+|+++.. |+++|||+|+|+||||+|||.|+++++|.++.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~-gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSG-GRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCC-CceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            68999998889999999999432 79999999999999999999999999999999999975

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.84  E-value=1e-20  Score=136.83  Aligned_cols=64  Identities=70%  Similarity=1.215  Sum_probs=59.8

Q ss_pred             eeeeeEECCCCeeEEEEecCCCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCcCCC
Q 026385           99 HYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEI  163 (239)
Q Consensus        99 ~YRGV~~r~~GKW~A~I~~~~~~Gkri~LGtFdT~EEAArAYD~AA~kl~G~~A~lNFp~s~y~~  163 (239)
                      +|+||+++++|||+|+|+++. +|+++|||+|+|+||||+|||.|+++++|.++.+|||.+.|+.
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~-~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~~   64 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPS-KGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYDS   64 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecC-CCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCCC
Confidence            599999988999999999865 4799999999999999999999999999999999999999863

>PHA00280 putative NHN endonuclease

Probab=99.57  E-value=4.2e-15  Score=121.45  Aligned_cols=71  Identities=13%  Similarity=0.083  Sum_probs=59.5

Q ss_pred             cccccc--cchhhhhcccCCCceeeeeEECC-CCeeEEEEecCCCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCCCC
Q 026385           79 IFRLKD--EDKDLEVADDYKERHYRGVRRRP-WGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAI  153 (239)
Q Consensus        79 ~~~~~~--~~~~~~~~~~~~tS~YRGV~~r~-~GKW~A~I~~~~~~Gkri~LGtFdT~EEAArAYD~AA~kl~G~~A~  153 (239)
                      |+++..  ++..|++..++++|+|+||++.+ .|||+|+|++   +||+++||.|+++|+|+.||+ ++.+|+|.+|.
T Consensus        46 NLr~~T~~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~---~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         46 NLRLALPKENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVTA---EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             HhhhcCHHHHhcccCCCCCCCCCCCeeEEecCCCeEEEEEEE---CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            444444  34456667789999999999655 5999999998   899999999999999999997 77899999885

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.24  E-value=1.7e-11  Score=85.37  Aligned_cols=53  Identities=30%  Similarity=0.446  Sum_probs=45.6

Q ss_pred             ceeeeeEECC-CCeeEEEEecCCCCC--cEEecCCCCCHHHHHHHHHHHHHHhcCC
Q 026385           98 RHYRGVRRRP-WGKYAAEIRDPNKKG--TRVWLGTFNTAVEAAKAYDNAAFKMRGR  150 (239)
Q Consensus        98 S~YRGV~~r~-~GKW~A~I~~~~~~G--kri~LGtFdT~EEAArAYD~AA~kl~G~  150 (239)
                      |+|+||++.+ .++|+|+|++...+|  ++++||.|++++||++||+.++.+++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            6899999655 599999999853333  8999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=81.46  E-value=4.8  Score=27.12  Aligned_cols=39  Identities=18%  Similarity=0.117  Sum_probs=29.5

Q ss_pred             eeEEEEe-cC--CCCCcEEecCCCCCHHHHHHHHHHHHHHhc
Q 026385          110 KYAAEIR-DP--NKKGTRVWLGTFNTAVEAAKAYDNAAFKMR  148 (239)
Q Consensus       110 KW~A~I~-~~--~~~Gkri~LGtFdT~EEAArAYD~AA~kl~  148 (239)
                      +|..+|. +.  .++-++++-+-|.|..||-.+...+...+.
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~   42 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE   42 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence            5777773 32  233367888999999999999998877764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	239
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		1e-23
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		1e-23

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/65 (72%), Positives = 55/65 (84%)
Query: 96  KERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILN 155
           K +HYRGVR+RPWGK+AAEIRDP K G RVWLGTF TA +AA AYD AAF+MRG +A+LN
Sbjct: 2   KGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLN 61
Query: 156 FPLEI 160
           FPL +
Sbjct: 62  FPLRV 66

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/63 (73%), Positives = 54/63 (85%)
Query: 98  RHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP 157
           +HYRGVR+RPWGK+AAEIRDP K G RVWLGTF TA +AA AYD AAF+MRG +A+LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60
Query: 158 LEI 160
           L +
Sbjct: 61  LRV 63

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	239
1gcc_A	63	Ethylene responsive element binding factor 1; tran	7e-44
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  140 bits (356), Expect = 7e-44
 Identities = 46/63 (73%), Positives = 54/63 (85%)

Query: 98  RHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP 157
           +HYRGVR+RPWGK+AAEIRDP K G RVWLGTF TA +AA AYD AAF+MRG +A+LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 158 LEI 160
           L +
Sbjct: 61  LRV 63

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 1e-06
 Identities = 40/217 (18%), Positives = 66/217 (30%), Gaps = 65/217 (29%)

Query: 5   HHHHQDHEALTLERISQYLLNDLTPMDSYSFISNLPQQNPASTDEQILVQKTSSTLSQRK 64
           HHHH D E        QY   D+  +   +F+ N         D + +     S LS+ +
Sbjct: 3   HHHHMDFETGEH----QYQYKDILSVFEDAFVDNF--------DCKDVQDMPKSILSKEE 50

Query: 65  PSSINVRIPPPTTSIFRLKD--EDKDLEVADDYKE----RHYRGVRRRPW--GKYAAEIR 116
              I +      +   RL      K  E+   + E     +Y       +       E R
Sbjct: 51  IDHI-IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY------KFLMSPIKTEQR 103

Query: 117 DPNKKGTRVWLGTFNTAVEAAKAY-DNAAF-KM---RG------RKAILNFPLEIGEISL 165
            P+          +    +  + Y DN  F K    R       R+A+L          L
Sbjct: 104 QPSMMTRM-----YIEQRD--RLYNDNQVFAKYNVSRLQPYLKLRQALLE---------L 147

Query: 166 DSDEVQQVD----CGKK-------RKYEENEEFERKV 191
              +   +D     GK          Y+   + + K+
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	239
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.92
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	92.97
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	92.13

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.92  E-value=1.4e-25  Score=162.68  Aligned_cols=62  Identities=74%  Similarity=1.347  Sum_probs=59.1

Q ss_pred             eeeeeEECCCCeeEEEEecCCCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCc
Q 026385           99 HYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEI  160 (239)
Q Consensus        99 ~YRGV~~r~~GKW~A~I~~~~~~Gkri~LGtFdT~EEAArAYD~AA~kl~G~~A~lNFp~s~  160 (239)
                      +||||+++++|||+|+|+++.++|+++|||+|+|+||||+|||.|+++++|.+|.+|||.++
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~   63 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence            69999998999999999998877899999999999999999999999999999999999863

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=92.97  E-value=0.0023  Score=52.79  Aligned_cols=59  Identities=7%  Similarity=-0.035  Sum_probs=38.1

Q ss_pred             ccccccccchhhh--hcccCCCceeeeeEECCCCeeEEEEecCCCCCcEEecCCCCCHHHHHHHHH
Q 026385           78 SIFRLKDEDKDLE--VADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYD  141 (239)
Q Consensus        78 ~~~~~~~~~~~~~--~~~~~~tS~YRGV~~r~~GKW~A~I~~~~~~Gkri~LGtFdT~EEAArAYD  141 (239)
                      .|++|+...++..  ...... ..++||.....++|.+.|.+   + +.++||.|++.+|||++|.
T Consensus        86 ~NL~~~t~~eN~~~~~~~~~~-~~~~g~~~~~~~k~~~vi~~---~-~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M           86 TNLRWVTQKINVENQMSRGTL-NVSKAQQIAKIKNQKPIIVI---S-PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             GGEEEECHHHHHHHHHHHTCC-CCHHHHHHHHHHTCCCEEEE---C-TTSCEEEESCHHHHHHHHT
T ss_pred             HHcEECCHHHHhhcccccCcc-cceeeeeeccCCCCceEEEE---c-CCceEEeeCCHHHHHHHHC
Confidence            3666666544432  222222 22567765333679999987   3 4677999999999999964

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=92.13  E-value=0.076  Score=39.84  Aligned_cols=28  Identities=21%  Similarity=0.177  Sum_probs=21.7

Q ss_pred             CCCceeeeeEECCC-CeeEEEEecCCCCCcEE
Q 026385           95 YKERHYRGVRRRPW-GKYAAEIRDPNKKGTRV  125 (239)
Q Consensus        95 ~~tS~YRGV~~r~~-GKW~A~I~~~~~~Gkri  125 (239)
                      ..+|+|+||++.+. +.|.|.-..   +|++.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e---~g~rr   31 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYD---GASRR   31 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEE---TTEEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEec---CCeEe
Confidence            35799999997766 999999998   45543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	239
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	1e-37

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  124 bits (312), Expect = 1e-37
 Identities = 46/63 (73%), Positives = 54/63 (85%)

Query: 98  RHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP 157
           +HYRGVR+RPWGK+AAEIRDP K G RVWLGTF TA +AA AYD AAF+MRG +A+LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 158 LEI 160
           L +
Sbjct: 61  LRV 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	239
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.92

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.92  E-value=3.6e-26  Score=164.64  Aligned_cols=62  Identities=74%  Similarity=1.347  Sum_probs=58.9

Q ss_pred             eeeeeEECCCCeeEEEEecCCCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCc
Q 026385           99 HYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEI  160 (239)
Q Consensus        99 ~YRGV~~r~~GKW~A~I~~~~~~Gkri~LGtFdT~EEAArAYD~AA~kl~G~~A~lNFp~s~  160 (239)
                      +||||+++++|||+|+|+++.++++++|||+|+|+||||+|||+|+++++|.++.+|||+++
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~~   63 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCccC
Confidence            59999988899999999998888899999999999999999999999999999999999864