Citrus Sinensis ID: 026400

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
MIPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMNRIQ
cHHHHHHHHHHHHHccccccccccccccccccccccEEccccccccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccccEEEEcccccccHHHHcccccccccEEEEcccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccccccccccccccc
ccHHHHHHHHHHHHccccccccccHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccHHHccccccHHHHHHHHHHHHHHcccccccccEccccccHHHHHccHHHHHccEEEEccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccEEEEEHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccccccccEEEcccc
MIPILMKAHdflknsqvtdnpqgdfRSMFRhiskggwtfsdkdhglpvsdcssesfvcclhlstmppeivgekmeperfydaANFMLYIQSKtggitgwepagapswiellnpieflDEVIIEHDYVECTASALKAMTLFQKlypkhkknevNNFITngvkftedsqkldgswygtwGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNiqcddggwgesylscpnklhmnriq
MIPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGEsylscpnklhmnriq
MIPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMNRIQ
**************************SMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPN********
MIPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPN*LH*****
MIPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMNRIQ
MIPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMN***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MIPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMNRIQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query239 2.2.26 [Sep-21-2011]
O82140763 Beta-Amyrin Synthase 1 OS N/A no 0.974 0.305 0.639 9e-94
Q9MB42765 Beta-amyrin synthase OS=G N/A no 0.983 0.307 0.634 2e-93
E2IUA6779 Taraxerol synthase OS=Kal N/A no 0.966 0.296 0.636 3e-92
A8CDT2759 Beta-amyrin synthase OS=B N/A no 0.970 0.305 0.637 3e-92
A8CDT3761 Lupeol synthase OS=Brugui N/A no 0.974 0.306 0.635 4e-92
E2IUA8767 Friedelin synthase OS=Kal N/A no 0.966 0.301 0.640 1e-91
Q9LRH7764 Mixed-amyrin synthase OS= N/A no 0.974 0.304 0.630 8e-91
A8C980759 Germanicol synthase OS=Rh N/A no 0.970 0.305 0.633 1e-90
E2IUA9765 Lupeol synthase OS=Kalanc N/A no 0.966 0.301 0.623 4e-90
Q8W3Z1 779 Beta-amyrin synthase OS=B N/A no 0.962 0.295 0.630 8e-90
>sp|O82140|BAMS1_PANGI Beta-Amyrin Synthase 1 OS=Panax ginseng GN=OSCPNY1 PE=1 SV=1 Back     alignment and function desciption
 Score =  342 bits (878), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 149/233 (63%), Positives = 187/233 (80%)

Query: 3   PILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHL 62
           P LMK HDF+K SQV DNP GDF+SM+RHISKG WTFSD+DHG  VSDC++E   CCL  
Sbjct: 439 PTLMKGHDFIKKSQVKDNPSGDFKSMYRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLIF 498

Query: 63  STMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVII 122
           STMP EIVG+K++PER YD+ N +L +Q K GG++ WEPAGA  W+ELLNP EF  +++I
Sbjct: 499 STMPEEIVGKKIKPERLYDSVNVLLSLQRKNGGLSAWEPAGAQEWLELLNPTEFFADIVI 558

Query: 123 EHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFI 182
           EH+YVECT+SA++A+ LF+KLYP H+K E++NFITN V++ ED+Q  DGSWYG WGVCF 
Sbjct: 559 EHEYVECTSSAIQALVLFKKLYPGHRKKEIDNFITNAVRYLEDTQMPDGSWYGNWGVCFT 618

Query: 183 YSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHM 235
           Y +W+A+ GL AA KTY NC A+RKA +FLL  Q DDGGWGESYLSCP K+++
Sbjct: 619 YGSWFALGGLAAAGKTYYNCAAVRKAVEFLLKSQMDDGGWGESYLSCPKKVYV 671
Oxidosqualene cyclase converting oxidosqualene into beta-amyrin, generating five rings and eight asymmetric centers in a single transformation.
Panax ginseng (taxid: 4054)
EC: 5EC: .EC: 4EC: .EC: 9EC: 9EC: .EC: 3EC: 9
>sp|Q9MB42|BAMS_GLYGL Beta-amyrin synthase OS=Glycyrrhiza glabra GN=GgbAS1 PE=1 SV=1 Back     alignment and function description
>sp|E2IUA6|TARS_KALDA Taraxerol synthase OS=Kalanchoe daigremontiana PE=1 SV=1 Back     alignment and function description
>sp|A8CDT2|BAS_BRUGY Beta-amyrin synthase OS=Bruguiera gymnorhiza GN=BAS PE=1 SV=1 Back     alignment and function description
>sp|A8CDT3|LUPS_BRUGY Lupeol synthase OS=Bruguiera gymnorhiza GN=LUS PE=1 SV=1 Back     alignment and function description
>sp|E2IUA8|FRIES_KALDA Friedelin synthase OS=Kalanchoe daigremontiana PE=1 SV=1 Back     alignment and function description
>sp|Q9LRH7|ABAMS_PEA Mixed-amyrin synthase OS=Pisum sativum GN=OSCPSM PE=1 SV=1 Back     alignment and function description
>sp|A8C980|GERS_RHISY Germanicol synthase OS=Rhizophora stylosa GN=M1 PE=1 SV=1 Back     alignment and function description
>sp|E2IUA9|LUPS_KALDA Lupeol synthase OS=Kalanchoe daigremontiana PE=1 SV=1 Back     alignment and function description
>sp|Q8W3Z1|BAMS_BETPL Beta-amyrin synthase OS=Betula platyphylla GN=OSCBPY PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query239
224057567 759 predicted protein [Populus trichocarpa] 0.962 0.303 0.660 6e-93
300431227 763 beta-amyrin synthase [Aralia elata] 0.974 0.305 0.648 3e-92
75220214 763 RecName: Full=Beta-Amyrin Synthase 1 gi| 0.974 0.305 0.639 5e-92
294488497 762 beta-amyrin synthase [Glycyrrhiza uralen 0.983 0.308 0.634 8e-92
75264952 765 RecName: Full=Beta-amyrin synthase gi|67 0.983 0.307 0.634 1e-91
256750576 762 beta-amyrin synthase [Glycyrrhiza uralen 0.983 0.308 0.629 1e-91
357467675 670 Beta-amyrin synthase [Medicago truncatul 0.970 0.346 0.646 5e-91
357467673 762 Beta-amyrin synthase [Medicago truncatul 0.974 0.305 0.639 1e-90
403377890 779 RecName: Full=Taraxerol synthase; Short= 0.966 0.296 0.636 1e-90
353678016 759 RecName: Full=Beta-amyrin synthase; Shor 0.970 0.305 0.637 2e-90
>gi|224057567|ref|XP_002299271.1| predicted protein [Populus trichocarpa] gi|222846529|gb|EEE84076.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  345 bits (886), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 152/230 (66%), Positives = 186/230 (80%)

Query: 3   PILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHL 62
           P L + H F+KNSQVT+NP GDFR MFRHISKG WTFSDKDHG  VSDC++ES  CCL  
Sbjct: 435 PALKEGHSFIKNSQVTENPPGDFRRMFRHISKGSWTFSDKDHGWQVSDCTAESMKCCLLF 494

Query: 63  STMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVII 122
           STMPPEIVGEKMEP++ +D+ N +L +QSK GG++ WEPAG+  W+E LNP+EFL+++++
Sbjct: 495 STMPPEIVGEKMEPQKLFDSVNILLSLQSKNGGVSAWEPAGSGLWLEWLNPVEFLEDLVV 554

Query: 123 EHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFI 182
           EH+YVECT+S ++A+ LF+KLYP H+  E+ N I NGVKF E+ QK DGSWYG WG+CFI
Sbjct: 555 EHEYVECTSSTIQALVLFKKLYPGHRTKEIQNSIINGVKFIEELQKPDGSWYGNWGICFI 614

Query: 183 YSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNK 232
           Y TW+A+ GL AA KTYSNCLA+RK  DFLL  Q DDGGWGESYLSCP K
Sbjct: 615 YGTWFALGGLAAAGKTYSNCLAVRKGVDFLLGSQRDDGGWGESYLSCPKK 664

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|300431227|gb|ADK12003.1| beta-amyrin synthase [Aralia elata] Back     alignment and taxonomy information
>gi|75220214|sp|O82140.1|BAMS1_PANGI RecName: Full=Beta-Amyrin Synthase 1 gi|3688600|dbj|BAA33461.1| beta-Amyrin Synthase [Panax ginseng] Back     alignment and taxonomy information
>gi|294488497|gb|ADE88148.1| beta-amyrin synthase [Glycyrrhiza uralensis] Back     alignment and taxonomy information
>gi|75264952|sp|Q9MB42.1|BAMS_GLYGL RecName: Full=Beta-amyrin synthase gi|6730969|dbj|BAA89815.1| beta-amyrin synthase [Glycyrrhiza glabra] Back     alignment and taxonomy information
>gi|256750576|gb|ACV21067.1| beta-amyrin synthase [Glycyrrhiza uralensis] Back     alignment and taxonomy information
>gi|357467675|ref|XP_003604122.1| Beta-amyrin synthase [Medicago truncatula] gi|355505177|gb|AES86319.1| Beta-amyrin synthase [Medicago truncatula] Back     alignment and taxonomy information
>gi|357467673|ref|XP_003604121.1| Beta-amyrin synthase [Medicago truncatula] gi|27475608|emb|CAD23247.1| beta-amyrin synthase [Medicago truncatula] gi|355505176|gb|AES86318.1| Beta-amyrin synthase [Medicago truncatula] Back     alignment and taxonomy information
>gi|403377890|sp|E2IUA6.1|TARS_KALDA RecName: Full=Taraxerol synthase; Short=KdTAS gi|300807974|gb|ADK35123.1| taraxerol synthase [Kalanchoe daigremontiana] Back     alignment and taxonomy information
>gi|353678016|sp|A8CDT2.1|BAS_BRUGY RecName: Full=Beta-amyrin synthase; Short=BgbAS gi|157679391|dbj|BAF80443.1| beta amyrin synthase [Bruguiera gymnorhiza] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query239
UNIPROTKB|A8CDT2759 BAS "Beta-amyrin synthase" [Br 0.970 0.305 0.637 1.8e-87
UNIPROTKB|A8CDT3761 LUS "Lupeol synthase" [Bruguie 0.974 0.306 0.635 1.8e-87
UNIPROTKB|E2IUA6779 E2IUA6 "Taraxerol synthase" [K 0.966 0.296 0.636 1.8e-87
UNIPROTKB|E2IUA8767 E2IUA8 "Friedelin synthase" [K 0.966 0.301 0.640 2.9e-87
UNIPROTKB|Q9LRH7764 OSCPSM "Mixed-amyrin synthase" 0.974 0.304 0.630 2.6e-86
UNIPROTKB|E2IUA9765 E2IUA9 "Lupeol synthase" [Kala 0.966 0.301 0.623 1.1e-85
UNIPROTKB|E2IUA7767 E2IUA7 "Glutinol synthase" [Ka 0.966 0.301 0.623 3e-85
UNIPROTKB|Q8W3Z1 779 OSCBPY "Beta-amyrin synthase" 0.962 0.295 0.630 3e-85
UNIPROTKB|Q2XPU7769 Q2XPU7 "Lupeol synthase" [Rici 0.974 0.302 0.618 8e-85
UNIPROTKB|F8WQD0761 SHS1 "Shionone synthase" [Aste 0.974 0.306 0.587 5e-83
UNIPROTKB|A8CDT2 BAS "Beta-amyrin synthase" [Bruguiera gymnorhiza (taxid:39984)] Back     alignment and assigned GO terms
 Score = 874 (312.7 bits), Expect = 1.8e-87, P = 1.8e-87
 Identities = 148/232 (63%), Positives = 182/232 (78%)

Query:     4 ILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLS 63
             +L + HDF+K SQV DNP GDF+SM+RHISKG WTFSD+DHG  VSDC++E   CCL  S
Sbjct:   439 VLRRGHDFIKKSQVRDNPSGDFKSMYRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLLFS 498

Query:    64 TMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIE 123
              MPPEIVGE M PER YD+ N +L +QSK GG++ WEPAGA  W+ELLNP EF  +++IE
Sbjct:   499 MMPPEIVGEHMVPERLYDSVNVLLSLQSKNGGLSAWEPAGAQEWLELLNPTEFFADIVIE 558

Query:   124 HDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIY 183
             H+YVECT+SA+ A+ LF+KLYP H+K E++NFI N V++ E  Q  DG WYG WGVCF Y
Sbjct:   559 HEYVECTSSAIHALVLFKKLYPGHRKKEIDNFIVNAVRYLESIQTSDGGWYGNWGVCFTY 618

Query:   184 STWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHM 235
              TW+A+ GL AA KTY+NCLA+RKA DFLL IQ D+GGWGESYLSCP K ++
Sbjct:   619 GTWFALGGLAAAGKTYNNCLAMRKAVDFLLRIQRDNGGWGESYLSCPEKRYV 670
GO:0016104 "triterpenoid biosynthetic process" evidence=IDA
GO:0042300 "beta-amyrin synthase activity" evidence=IDA
UNIPROTKB|A8CDT3 LUS "Lupeol synthase" [Bruguiera gymnorhiza (taxid:39984)] Back     alignment and assigned GO terms
UNIPROTKB|E2IUA6 E2IUA6 "Taraxerol synthase" [Kalanchoe daigremontiana (taxid:23013)] Back     alignment and assigned GO terms
UNIPROTKB|E2IUA8 E2IUA8 "Friedelin synthase" [Kalanchoe daigremontiana (taxid:23013)] Back     alignment and assigned GO terms
UNIPROTKB|Q9LRH7 OSCPSM "Mixed-amyrin synthase" [Pisum sativum (taxid:3888)] Back     alignment and assigned GO terms
UNIPROTKB|E2IUA9 E2IUA9 "Lupeol synthase" [Kalanchoe daigremontiana (taxid:23013)] Back     alignment and assigned GO terms
UNIPROTKB|E2IUA7 E2IUA7 "Glutinol synthase" [Kalanchoe daigremontiana (taxid:23013)] Back     alignment and assigned GO terms
UNIPROTKB|Q8W3Z1 OSCBPY "Beta-amyrin synthase" [Betula platyphylla (taxid:78630)] Back     alignment and assigned GO terms
UNIPROTKB|Q2XPU7 Q2XPU7 "Lupeol synthase" [Ricinus communis (taxid:3988)] Back     alignment and assigned GO terms
UNIPROTKB|F8WQD0 SHS1 "Shionone synthase" [Aster tataricus (taxid:588669)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.4.99LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query239
PLN02993763 PLN02993, PLN02993, lupeol synthase 1e-114
PLN03012759 PLN03012, PLN03012, Camelliol C synthase 1e-112
cd02892634 cd02892, SQCY_1, Squalene cyclase (SQCY) domain su 4e-98
cd02889348 cd02889, SQCY, Squalene cyclase (SQCY) domain; fou 1e-88
TIGR01787621 TIGR01787, squalene_cyclas, squalene/oxidosqualene 2e-77
TIGR03463634 TIGR03463, osq_cycl, 2,3-oxidosqualene cyclase 6e-57
COG1657517 COG1657, SqhC, Squalene cyclase [Lipid metabolism] 1e-31
cd00688300 cd00688, ISOPREN_C2_like, This group contains clas 3e-21
TIGR01507635 TIGR01507, hopene_cyclase, squalene-hopene cyclase 2e-16
pfam13249112 pfam13249, Prenyltrans_2, Prenyltransferase-like 1e-09
pfam13243109 pfam13243, Prenyltrans_1, Prenyltransferase-like 7e-08
TIGR04277624 TIGR04277, squa_tetra_cyc, squalene--tetrahymanol 5e-07
pfam13249112 pfam13249, Prenyltrans_2, Prenyltransferase-like 7e-05
cd00688 300 cd00688, ISOPREN_C2_like, This group contains clas 4e-04
pfam0043244 pfam00432, Prenyltrans, Prenyltransferase and squa 0.003
>gnl|CDD|215537 PLN02993, PLN02993, lupeol synthase Back     alignment and domain information 
 Score =  343 bits (880), Expect = e-114
 Identities = 126/229 (55%), Positives = 173/229 (75%)

Query: 4   ILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLS 63
           +L + H+++K SQV +NP GDF+SM+RHISKG WT SD+DHG  VSDC++E+  CC+ LS
Sbjct: 440 VLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGWQVSDCTAEALKCCMLLS 499

Query: 64  TMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIE 123
            MP ++VG+K++PE+ YD+ N +L +QS+ GG+T WEP  A  W+ELLNP +F    ++E
Sbjct: 500 MMPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVE 559

Query: 124 HDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIY 183
            +YVECT++ ++A+ LF++LYP H+  E+   I   V+F E  Q  DGSWYG WG+CFIY
Sbjct: 560 REYVECTSAVIQALVLFKQLYPDHRTKEIIKSIEKAVQFIESKQTPDGSWYGNWGICFIY 619

Query: 184 STWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNK 232
           +TW+A+ GL AA KTY++CLA+RK   FLL IQ DDGGWGESYLSCP +
Sbjct: 620 ATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQRDDGGWGESYLSCPEQ 668

Length = 763
>gnl|CDD|166653 PLN03012, PLN03012, Camelliol C synthase Back     alignment and domain information
>gnl|CDD|239222 cd02892, SQCY_1, Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>gnl|CDD|239219 cd02889, SQCY, Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>gnl|CDD|233578 TIGR01787, squalene_cyclas, squalene/oxidosqualene cyclases Back     alignment and domain information
>gnl|CDD|234220 TIGR03463, osq_cycl, 2,3-oxidosqualene cyclase Back     alignment and domain information
>gnl|CDD|224571 COG1657, SqhC, Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>gnl|CDD|233442 TIGR01507, hopene_cyclase, squalene-hopene cyclase Back     alignment and domain information
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|205423 pfam13243, Prenyltrans_1, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|212000 TIGR04277, squa_tetra_cyc, squalene--tetrahymanol cyclase Back     alignment and domain information
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 239
PLN03012759 Camelliol C synthase 100.0
PLN02993763 lupeol synthase 100.0
KOG0497760 consensus Oxidosqualene-lanosterol cyclase and rel 100.0
TIGR03463634 osq_cycl 2,3-oxidosqualene cyclase. This model ide 100.0
TIGR01507635 hopene_cyclase squalene-hopene cyclase. SHC is an 100.0
TIGR01787621 squalene_cyclas squalene/oxidosqualene cyclases. T 100.0
cd02892634 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; 100.0
PLN03012759 Camelliol C synthase 100.0
cd02889348 SQCY Squalene cyclase (SQCY) domain; found in clas 100.0
PLN02993763 lupeol synthase 99.97
TIGR03463634 osq_cycl 2,3-oxidosqualene cyclase. This model ide 99.97
TIGR01507635 hopene_cyclase squalene-hopene cyclase. SHC is an 99.96
COG1657517 SqhC Squalene cyclase [Lipid metabolism] 99.96
TIGR01787621 squalene_cyclas squalene/oxidosqualene cyclases. T 99.95
cd02892634 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; 99.91
cd02889 348 SQCY Squalene cyclase (SQCY) domain; found in clas 99.88
cd00688300 ISOPREN_C2_like This group contains class II terpe 99.87
PF13249113 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 99.83
cd00688300 ISOPREN_C2_like This group contains class II terpe 99.78
KOG0497760 consensus Oxidosqualene-lanosterol cyclase and rel 99.78
cd02890286 PTase Protein prenyltransferase (PTase) domain, be 99.75
PF13249113 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 99.73
cd02896297 complement_C3_C4_C5 Proteins similar to C3, C4 and 99.72
PLN03201 316 RAB geranylgeranyl transferase beta-subunit; Provi 99.68
cd02897292 A2M_2 Proteins similar to alpha2-macroglobulin (al 99.68
cd02890 286 PTase Protein prenyltransferase (PTase) domain, be 99.68
cd02894287 GGTase-II Geranylgeranyltransferase type II (GGTas 99.67
cd02894287 GGTase-II Geranylgeranyltransferase type II (GGTas 99.65
cd02896297 complement_C3_C4_C5 Proteins similar to C3, C4 and 99.65
PF13243109 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 99.64
TIGR02474290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 99.61
PLN03201316 RAB geranylgeranyl transferase beta-subunit; Provi 99.57
cd02897292 A2M_2 Proteins similar to alpha2-macroglobulin (al 99.57
cd02893299 FTase Protein farnesyltransferase (FTase)_like pro 99.54
PF13243109 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 99.51
cd02895307 GGTase-I Geranylgeranyltransferase types I (GGTase 99.5
cd02895307 GGTase-I Geranylgeranyltransferase types I (GGTase 99.48
PLN02710 439 farnesyltranstransferase subunit beta 99.46
COG1657517 SqhC Squalene cyclase [Lipid metabolism] 99.46
cd02893299 FTase Protein farnesyltransferase (FTase)_like pro 99.43
KOG0366 329 consensus Protein geranylgeranyltransferase type I 99.4
cd02891282 A2M_like Proteins similar to alpha2-macroglobulin 99.36
cd02891282 A2M_like Proteins similar to alpha2-macroglobulin 99.31
PLN02710 439 farnesyltranstransferase subunit beta 99.26
PF07678246 A2M_comp: A-macroglobulin complement component; In 99.23
TIGR02474290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 99.09
KOG0366329 consensus Protein geranylgeranyltransferase type I 99.03
COG5029342 CAL1 Prenyltransferase, beta subunit [Posttranslat 98.89
PF07678246 A2M_comp: A-macroglobulin complement component; In 98.89
PF09492289 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 98.77
KOG0367347 consensus Protein geranylgeranyltransferase Type I 98.75
COG5029342 CAL1 Prenyltransferase, beta subunit [Posttranslat 98.71
KOG0365 423 consensus Beta subunit of farnesyltransferase [Pos 98.62
PF09492289 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 98.34
KOG0367347 consensus Protein geranylgeranyltransferase Type I 98.32
KOG0365 423 consensus Beta subunit of farnesyltransferase [Pos 98.31
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF0043244 Prenyltrans: Prenyltransferase and squalene oxidas 98.24
PF01122326 Cobalamin_bind: Eukaryotic cobalamin-binding prote 98.2
COG1689274 Uncharacterized protein conserved in archaea [Func 98.0
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF0043244 Prenyltrans: Prenyltransferase and squalene oxidas 97.75
COG1689274 Uncharacterized protein conserved in archaea [Func 97.71
PF01122326 Cobalamin_bind: Eukaryotic cobalamin-binding prote 97.22
TIGR01577 616 oligosac_amyl oligosaccharide amylase. The name of 96.46
TIGR01535 648 glucan_glucosid glucan 1,4-alpha-glucosidase. Gluc 96.2
PF07470336 Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte 96.11
PLN02592 800 ent-copalyl diphosphate synthase 96.06
PLN02592 800 ent-copalyl diphosphate synthase 95.39
PLN02279 784 ent-kaur-16-ene synthase 94.63
PLN02279 784 ent-kaur-16-ene synthase 94.4
PF07470336 Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte 94.1
cd00249 384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 94.03
PF07944 520 DUF1680: Putative glycosyl hydrolase of unknown fu 93.36
TIGR01535 648 glucan_glucosid glucan 1,4-alpha-glucosidase. Gluc 92.42
KOG1366 1436 consensus Alpha-macroglobulin [Posttranslational m 91.23
KOG1366 1436 consensus Alpha-macroglobulin [Posttranslational m 91.01
cd00249 384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 90.26
COG2373 1621 Large extracellular alpha-helical protein [General 88.07
COG2373 1621 Large extracellular alpha-helical protein [General 87.91
TIGR01577 616 oligosac_amyl oligosaccharide amylase. The name of 86.88
PF07221 346 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcN 85.43
COG4225357 Predicted unsaturated glucuronyl hydrolase involve 83.72
COG4225357 Predicted unsaturated glucuronyl hydrolase involve 80.62
>PLN03012 Camelliol C synthase Back     alignment and domain information 
Probab=100.00  E-value=1.6e-57  Score=426.92  Aligned_cols=237  Identities=57%  Similarity=1.165  Sum_probs=223.3

Q ss_pred             CHHHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHH
Q 026400            1 MIPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFY   80 (239)
Q Consensus         1 ~~~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~   80 (239)
                      +++.|.||++||+++|++++++|+|..++|+.++|||+|++.+++|||+||||++|+|++.+...++++.+.++..+++.
T Consensus       437 ~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sD~TAe~Lka~lll~~~~~~~~~~~~~~~~l~  516 (759)
T PLN03012        437 IPDVLRRGHDFIKNSQVGENPSGDFKNMYRHISKGAWTFSDRDHGWQASDCTAEGFKCCLLFSMIAPDIVGPKMDPEQLH  516 (759)
T ss_pred             chHHHHHHHHHHHHHhccCCCCChhhhhCCCCCCCcccccCCCCCCCCCCccHHHHHHHHHHHhcccccccccccHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999998777766666566778889999


Q ss_pred             hhhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHH
Q 026400           81 DAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGV  160 (239)
Q Consensus        81 ~av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~  160 (239)
                      +||+||+++||+||||++|+.+++..|++.+|++|.|+++|+|++|++||++||.+|..+++..|.++.++++++|+||+
T Consensus       517 ~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~i~~~i~rAv  596 (759)
T PLN03012        517 DAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTEEINAFIKKAA  596 (759)
T ss_pred             HHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchhhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998888888788889999999


Q ss_pred             HHHHhcccCCCCccCCCCcchhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHhccCCCCccCCCCCcCCCCccccC
Q 026400          161 KFTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMNR  237 (239)
Q Consensus       161 ~~L~~~Q~~dG~w~g~~g~~~~~~T~~al~aL~~~g~~~~~~~~i~~a~~~L~~~Q~~dGgWg~~~~s~~~~~y~~~  237 (239)
                      +||++.|++||||+|+||++++|+|++||.||..+|.++.+++.|+||++||+++|++|||||+++.||.++.|+.+
T Consensus       597 ~~L~~~Q~~DGsW~G~Wgv~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~~  673 (759)
T PLN03012        597 EYIENIQMLDGSWYGNWGICFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYIAQ  673 (759)
T ss_pred             HHHHHhcCCCCCCcccccccCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCCCCCCCCccccCC
Confidence            99999999999999999999999999999999999987645699999999999999999999999999999999874

>PLN02993 lupeol synthase Back     alignment and domain information
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase Back     alignment and domain information
>TIGR01507 hopene_cyclase squalene-hopene cyclase Back     alignment and domain information
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases Back     alignment and domain information
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>PLN03012 Camelliol C synthase Back     alignment and domain information
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>PLN02993 lupeol synthase Back     alignment and domain information
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase Back     alignment and domain information
>TIGR01507 hopene_cyclase squalene-hopene cyclase Back     alignment and domain information
>COG1657 SqhC Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases Back     alignment and domain information
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C Back     alignment and domain information
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C Back     alignment and domain information
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement Back     alignment and domain information
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement Back     alignment and domain information
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A Back     alignment and domain information
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>PLN02710 farnesyltranstransferase subunit beta Back     alignment and domain information
>COG1657 SqhC Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>PLN02710 farnesyltranstransferase subunit beta Back     alignment and domain information
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family Back     alignment and domain information
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4 Back     alignment and domain information
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4 Back     alignment and domain information
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family Back     alignment and domain information
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals Back     alignment and domain information
>COG1689 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family Back     alignment and domain information
>COG1689 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals Back     alignment and domain information
>TIGR01577 oligosac_amyl oligosaccharide amylase Back     alignment and domain information
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase Back     alignment and domain information
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [] Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [] Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function Back     alignment and domain information
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase Back     alignment and domain information
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>COG2373 Large extracellular alpha-helical protein [General function prediction only] Back     alignment and domain information
>COG2373 Large extracellular alpha-helical protein [General function prediction only] Back     alignment and domain information
>TIGR01577 oligosac_amyl oligosaccharide amylase Back     alignment and domain information
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5 Back     alignment and domain information
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only] Back     alignment and domain information
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query239
1w6j_A732 Structure Of Human Osc In Complex With Ro 48-8071 L 8e-49
1w6k_A732 Structure Of Human Osc In Complex With Lanosterol L 1e-48
3sqc_A631 Squalene-Hopene Cyclase Length = 631 1e-09
2sqc_A631 Squalene-Hopene Cyclase From Alicyclobacillus Acido 1e-09
1gsz_A631 Crystal Structure Of A Squalene Cyclase In Complex 1e-09
>pdb|1W6J|A Chain A, Structure Of Human Osc In Complex With Ro 48-8071 Length = 732 Back     alignment and structure 
Iteration: 1

 Score =  189 bits (481), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 91/238 (38%), Positives = 140/238 (58%), Gaps = 5/238 (2%)
Query: 5   LMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLST 64
           L KAH+FL+ SQV DNP  D++  +R + KGG++FS  D G  VSDC++E+    L L  
Sbjct: 411 LQKAHEFLRLSQVPDNPP-DYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQE 469
Query: 65  MPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEH 124
             P +  E +  ER  DA   +L +++  GG   +E       +ELLNP E   +++I++
Sbjct: 470 KCPHVT-EHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDY 528
Query: 125 DYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFIYS 184
            YVECT++ ++A+  F K +P+H+  E+   +T G++F    Q+ DGSW G+WGVCF Y 
Sbjct: 529 TYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYG 588
Query: 185 TWWAISGLVAAEKTYSN---CLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMNRIQ 239
           TW+ +       +TY +   C  + +A DFLL+ Q  DGGWGE + SC  + ++   Q
Sbjct: 589 TWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYLQSAQ 646
>pdb|1W6K|A Chain A, Structure Of Human Osc In Complex With Lanosterol Length = 732 Back     alignment and structure
>pdb|3SQC|A Chain A, Squalene-Hopene Cyclase Length = 631 Back     alignment and structure
>pdb|2SQC|A Chain A, Squalene-Hopene Cyclase From Alicyclobacillus Acidocaldarius Length = 631 Back     alignment and structure
>pdb|1GSZ|A Chain A, Crystal Structure Of A Squalene Cyclase In Complex With The Potential Anticholesteremic Drug Ro48-8071 Length = 631 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query239
1w6k_A732 Lanosterol synthase; cyclase, cholesterol, monotop 2e-65
2sqc_A631 Squalene-hopene cyclase; isomerase, triterpene cyc 9e-54
2sqc_A 631 Squalene-hopene cyclase; isomerase, triterpene cyc 1e-05
1r76_A 408 Pectate lyase; A-helical structure; 2.65A {Azospir 3e-10
1r76_A408 Pectate lyase; A-helical structure; 2.65A {Azospir 4e-06
3q7a_B 520 Farnesyltransferase beta subunit; protein prenyltr 1e-04
2bb6_A 414 TCII, TC II, transcobalamin II; alpha_6 - alpha_6 7e-04
3dss_B 331 Geranylgeranyl transferase type-2 subunit beta; pr 7e-04
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Length = 732 Back     alignment and structure
 Score =  214 bits (546), Expect = 2e-65
 Identities = 90/233 (38%), Positives = 137/233 (58%), Gaps = 5/233 (2%)

Query: 3   PILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHL 62
             L KAH+FL+ SQV DNP  D++  +R + KGG++FS  D G  VSDC++E+    L L
Sbjct: 409 SCLQKAHEFLRLSQVPDNP-PDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLL 467

Query: 63  STMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVII 122
               P +  E +  ER  DA   +L +++  GG   +E       +ELLNP E   +++I
Sbjct: 468 QEKCPHV-TEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMI 526

Query: 123 EHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFI 182
           ++ YVECT++ ++A+  F K +P+H+  E+   +T G++F    Q+ DGSW G+WGVCF 
Sbjct: 527 DYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFT 586

Query: 183 YSTWWAISGLVAAEKTYSN---CLAIRKATDFLLNIQCDDGGWGESYLSCPNK 232
           Y TW+ +       +TY +   C  + +A DFLL+ Q  DGGWGE + SC  +
Sbjct: 587 YGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEER 639
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631 Back     alignment and structure
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631 Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Length = 408 Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Length = 408 Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3CX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Length = 520 Back     alignment and structure
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* Length = 414 Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query239
1w6k_A732 Lanosterol synthase; cyclase, cholesterol, monotop 100.0
2sqc_A631 Squalene-hopene cyclase; isomerase, triterpene cyc 100.0
2sqc_A631 Squalene-hopene cyclase; isomerase, triterpene cyc 99.94
1r76_A408 Pectate lyase; A-helical structure; 2.65A {Azospir 99.93
1gxm_A332 Pectate lyase; mechanism, elimination; 1.32A {Cell 99.91
2h6f_B 437 Protein farnesyltransferase beta subunit; ftase, f 99.9
1w6k_A732 Lanosterol synthase; cyclase, cholesterol, monotop 99.9
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 99.86
2h6f_B 437 Protein farnesyltransferase beta subunit; ftase, f 99.86
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 99.85
3q7a_B 520 Farnesyltransferase beta subunit; protein prenyltr 99.85
1n4q_B 377 Geranyltransferase type-I beta subunit; protein ge 99.84
1qqf_A277 Protein (complement C3DG); alpha-alpha barrel, imm 99.8
2wy7_A310 Complement C3D fragment; immune system, immune res 99.78
1n4q_B377 Geranyltransferase type-I beta subunit; protein ge 99.77
1hzf_A367 Complement factor C4A; alpha-alpha 6 barrel, immun 99.76
3q7a_B 520 Farnesyltransferase beta subunit; protein prenyltr 99.64
1qqf_A277 Protein (complement C3DG); alpha-alpha barrel, imm 99.62
1hzf_A 367 Complement factor C4A; alpha-alpha 6 barrel, immun 99.62
2wy7_A310 Complement C3D fragment; immune system, immune res 99.61
1r76_A408 Pectate lyase; A-helical structure; 2.65A {Azospir 99.54
2hr0_B 915 Complement C3 alpha' chain; complement component C 99.5
1gxm_A 332 Pectate lyase; mechanism, elimination; 1.32A {Cell 99.44
4acq_A 1451 Alpha-2-macroglobulin; hydrolase inhibitor, protei 99.4
2pn5_A 1325 TEP1R, thioester-containing protein I; FULL-length 99.38
4acq_A 1451 Alpha-2-macroglobulin; hydrolase inhibitor, protei 99.25
2pn5_A 1325 TEP1R, thioester-containing protein I; FULL-length 99.22
2hr0_B 915 Complement C3 alpha' chain; complement component C 99.16
2bb6_A 414 TCII, TC II, transcobalamin II; alpha_6 - alpha_6 99.12
2pmv_A 399 Gastric intrinsic factor; cobalamin transport prot 99.11
3dra_B390 Geranylgeranyltransferase type I beta subunit; ger 98.99
3dra_B 390 Geranylgeranyltransferase type I beta subunit; ger 98.92
4fxk_B 767 Complement C4-A alpha chain; immune system, proteo 98.83
2bb6_A414 TCII, TC II, transcobalamin II; alpha_6 - alpha_6 98.8
2b39_A 1661 C3; thioester, immune defense, immune system; HET: 98.52
3prx_B 1642 Cobra venom factor; immune system, complement, imm 98.52
2pmv_A399 Gastric intrinsic factor; cobalamin transport prot 98.46
3cu7_A 1676 Complement C5; Mg domain, inflammation, anaphylato 98.39
4fxk_B 767 Complement C4-A alpha chain; immune system, proteo 98.37
2b39_A 1661 C3; thioester, immune defense, immune system; HET: 98.26
3cu7_A 1676 Complement C5; Mg domain, inflammation, anaphylato 98.17
3prx_B 1642 Cobra venom factor; immune system, complement, imm 98.01
3k11_A 445 Putative glycosyl hydrolase; structural genomics, 96.67
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 96.64
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 96.59
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 96.56
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 96.56
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 95.99
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 95.92
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 95.85
3k11_A445 Putative glycosyl hydrolase; structural genomics, 95.83
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 95.81
3pmm_A382 Putative cytoplasmic protein; structural genomics, 95.35
2gz6_A 388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 94.41
1nc5_A373 Hypothetical protein YTER; structural genomics, he 93.32
1ulv_A 1020 Glucodextranase; GH family 15, (alpha-alpha)6-barr 93.16
3pmm_A382 Putative cytoplasmic protein; structural genomics, 93.13
1lf6_A 684 Glucoamylase; (alpha/alpha) barrel, 6 alpha-helica 92.57
3gt5_A 402 N-acetylglucosamine 2-epimerase; structural genomi 92.45
1nc5_A373 Hypothetical protein YTER; structural genomics, he 92.18
1fp3_A 402 N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr 91.15
2gz6_A 388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 91.08
2vn4_A 599 Glucoamylase; hydrolase, carbohydrate binding, gly 90.87
2fba_A 492 Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hy 89.56
1wgn_A63 UBAP1, ubiquitin associated protein; ubiquitin ass 87.0
1gai_A 472 Glucoamylase-471; hydrolase, glycosidase, polysacc 82.17
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Back     alignment and structure
Probab=100.00  E-value=5.1e-41  Score=319.96  Aligned_cols=232  Identities=38%  Similarity=0.782  Sum_probs=203.9

Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHh
Q 026400            2 IPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYD   81 (239)
Q Consensus         2 ~~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~   81 (239)
                      .+.+++|++||+++|++++ +|+|...||+..+|||+|++.++++|++||||.+|+||..+.+.+++ .+..++.++|.+
T Consensus       408 ~~~l~ka~~~L~~~Q~~~~-~~d~~~~~r~~~~GGW~f~~~~~~~pd~d~TA~vl~aL~~~~~~~~~-~g~~~~~~~i~~  485 (732)
T 1w6k_A          408 SSCLQKAHEFLRLSQVPDN-PPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPH-VTEHIPRERLCD  485 (732)
T ss_dssp             HHHHHHHHHHHHHHSCCCC-CTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTT-CCSCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccc-CCcccccccCCCCCeecCCCCCCCCCccccHHHHHHHHHHHhccccc-ccchhhHHHHHH
Confidence            5689999999999999764 57888899999999999999888999999999999999998653321 134567899999


Q ss_pred             hhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHH
Q 026400           82 AANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVK  161 (239)
Q Consensus        82 av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~  161 (239)
                      +++||+++|++||||+.|+.+++..+++.+++.|.|++.+++++++++|+.+|.+|..++...|.++..+++++|+||++
T Consensus       486 av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~  565 (732)
T 1w6k_A          486 AVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLE  565 (732)
T ss_dssp             HHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHHHHhccccccccchhhHHHHHHHHH
Confidence            99999999999999999999888889999999998988899999999999999999999877777776677889999999


Q ss_pred             HHHhcccCCCCccCCCCcchhhHHHHHHHHHHHcCccCCCH---HHHHHHHHHHHhccCCCCccCCCCCcCCCCccc
Q 026400          162 FTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYSNC---LAIRKATDFLLNIQCDDGGWGESYLSCPNKLHM  235 (239)
Q Consensus       162 ~L~~~Q~~dG~w~g~~g~~~~~~T~~al~aL~~~g~~~~~~---~~i~~a~~~L~~~Q~~dGgWg~~~~s~~~~~y~  235 (239)
                      ||++.|++||+|.+.||.+++|+|++++.||..+|....+.   +.++||++||+++|++||||++.+.|+.++.|.
T Consensus       566 yL~~~Q~~DGsW~g~wg~~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y~  642 (732)
T 1w6k_A          566 FCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYV  642 (732)
T ss_dssp             HHHHHSCTTSCCCCSSBSSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCC
T ss_pred             HHHhhcCCCCCccCcCCCccchHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHhcccCCCCCCCCccccccccC
Confidence            99999999999999999999999999999999999764223   799999999999999999999987665554443
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Back     alignment and structure
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Back     alignment and structure
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Back     alignment and structure
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A Back     alignment and structure
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Back     alignment and structure
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Back     alignment and structure
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A Back     alignment and structure
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 Back     alignment and structure
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Back     alignment and structure
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ... Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Back     alignment and structure
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} Back     alignment and structure
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} Back     alignment and structure
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} Back     alignment and structure
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} Back     alignment and structure
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ... Back     alignment and structure
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* Back     alignment and structure
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A* Back     alignment and structure
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B* Back     alignment and structure
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* Back     alignment and structure
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} Back     alignment and structure
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* Back     alignment and structure
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A* Back     alignment and structure
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A Back     alignment and structure
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B* Back     alignment and structure
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} Back     alignment and structure
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A Back     alignment and structure
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* Back     alignment and structure
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Back     alignment and structure
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A* Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A* Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Back     alignment and structure
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3 Back     alignment and structure
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A* Back     alignment and structure
>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A Back     alignment and structure
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A {Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A* 3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 239
d1w6ka1448 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase { 5e-73
d2sqca1352 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cycla 8e-47
d1r76a_408 a.102.5.1 (A:) Polygalacturonic acid lyase (pectat 9e-11
d1r76a_ 408 a.102.5.1 (A:) Polygalacturonic acid lyase (pectat 4e-09
d1gxma_324 a.102.5.1 (A:) Polygalacturonic acid lyase (pectat 6e-08
d1gxma_ 324 a.102.5.1 (A:) Polygalacturonic acid lyase (pectat 0.002
d2h6fb1 401 a.102.4.3 (B:521-921) Protein farnesyltransferase, 7e-06
d3dssb1 325 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, 5e-05
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 448 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  226 bits (578), Expect = 5e-73
 Identities = 91/233 (39%), Positives = 137/233 (58%), Gaps = 5/233 (2%)

Query: 3   PILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHL 62
             L KAH+FL+ SQV DNP  D++  +R + KGG++FS  D G  VSDC++E+    L L
Sbjct: 125 SCLQKAHEFLRLSQVPDNP-PDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLL 183

Query: 63  STMPPEIVGEKMEPERFYDAANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVII 122
               P  V E +  ER  DA   +L +++  GG   +E       +ELLNP E   +++I
Sbjct: 184 QEKCPH-VTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMI 242

Query: 123 EHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVKFTEDSQKLDGSWYGTWGVCFI 182
           ++ YVECT++ ++A+  F K +P+H+  E+   +T G++F    Q+ DGSW G+WGVCF 
Sbjct: 243 DYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFT 302

Query: 183 YSTWWAISGLVAAEKTYSN---CLAIRKATDFLLNIQCDDGGWGESYLSCPNK 232
           Y TW+ +       +TY +   C  + +A DFLL+ Q  DGGWGE + SC  +
Sbjct: 303 YGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEER 355
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 352 Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Length = 408 Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Length = 408 Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Length = 324 Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Length = 324 Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query239
d1w6ka1448 Lanosterol synthase {Human (Homo sapiens) [TaxId: 100.0
d2sqca1352 Squalene-hopene cyclase {Alicyclobacillus acidocal 100.0
d1w6ka1448 Lanosterol synthase {Human (Homo sapiens) [TaxId: 99.96
d2sqca1352 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.95
d1gxma_324 Polygalacturonic acid lyase (pectate lyase) {Cellv 99.82
d1r76a_408 Polygalacturonic acid lyase (pectate lyase) {Azosp 99.79
d3dssb1325 Rab geranylgeranyltransferase, beta subunit {Rat ( 99.66
d2sqca2271 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.66
d3dssb1 325 Rab geranylgeranyltransferase, beta subunit {Rat ( 99.63
d2h6fb1 401 Protein farnesyltransferase, beta-subunit {Human ( 99.54
d2h6fb1 401 Protein farnesyltransferase, beta-subunit {Human ( 99.54
d1r76a_ 408 Polygalacturonic acid lyase (pectate lyase) {Azosp 99.46
d1n4qb_346 Protein farnesyltransferase, beta-subunit {Rat (Ra 99.3
d1gxma_ 324 Polygalacturonic acid lyase (pectate lyase) {Cellv 99.27
d1n4qb_346 Protein farnesyltransferase, beta-subunit {Rat (Ra 99.25
d1hzfa_326 C4adg fragment of complement factor C4a {Human (Ho 99.19
d1c3da_294 C3D, a C3 fragment and ligand for complement recep 98.9
d2sqca2 271 Squalene-hopene cyclase {Alicyclobacillus acidocal 98.83
d1hzfa_ 326 C4adg fragment of complement factor C4a {Human (Ho 98.71
d1w6ka2 279 Lanosterol synthase {Human (Homo sapiens) [TaxId: 98.64
d1c3da_294 C3D, a C3 fragment and ligand for complement recep 98.18
d1w6ka2 279 Lanosterol synthase {Human (Homo sapiens) [TaxId: 98.13
d1ulva1 413 Glucodextranase, domain A {Arthrobacter globiformi 96.39
d1lf6a1 397 Bacterial glucoamylase, C-terminal domain {Thermoa 95.47
d1fp3a_ 402 N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) 94.91
d1lf6a1 397 Bacterial glucoamylase, C-terminal domain {Thermoa 93.57
d1nc5a_363 Hypothetical protein YteR {Bacillus subtilis [TaxI 92.02
d1ia6a_ 431 Nonprocessive cellulase Cel9M {Clostridium cellulo 87.56
d2afaa1 411 Putative NAG isomerase YihS {Salmonella typhimuriu 84.64
d1nc5a_363 Hypothetical protein YteR {Bacillus subtilis [TaxI 81.9
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-51  Score=367.69  Aligned_cols=233  Identities=39%  Similarity=0.796  Sum_probs=213.9

Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCcchhcCCCCCCcccccCCCCCCCCCcchHHHHHHHHHhcCCCCcccCCCCChHHHHh
Q 026400            2 IPILMKAHDFLKNSQVTDNPQGDFRSMFRHISKGGWTFSDKDHGLPVSDCSSESFVCCLHLSTMPPEIVGEKMEPERFYD   81 (239)
Q Consensus         2 ~~~l~~a~~~l~~~Q~~~~~~g~~~~~~~~~~~ggw~~~~~~~~~~~~d~Ta~~l~aL~~~~~~~~~~~~~~~~~~~i~~   81 (239)
                      +++|++|++||+.+|..++ +|+|..++++..+|||.|++.+++|||+||||++|+||+.+....+. .+..+.+++|.+
T Consensus       124 ~~~l~kA~~wL~~~Q~~~~-~gd~~~~~~~~~~GGW~f~~~n~~~Pd~DdTA~~l~al~~~~~~~~~-~~~~~~~~~i~~  201 (448)
T d1w6ka1         124 SSCLQKAHEFLRLSQVPDN-PPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPH-VTEHIPRERLCD  201 (448)
T ss_dssp             HHHHHHHHHHHHHHSCCCC-CTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTT-CCSCCCHHHHHH
T ss_pred             hHHHHHHHHHHHhhccCcC-CCcchhhcCCCCCCceeCCcCCCCCCCCccHHHHHHHHHHHhccCcc-ccccccHHHHHH
Confidence            5789999999999999875 58999999999999999999999999999999999999987654332 345678899999


Q ss_pred             hhhHHhhcccCCcceeeccCCCChhhhhhhchhhhhhhhhccCCCccchHHHHHHHHHhhhhCCCCchhhhHHHHHHHHH
Q 026400           82 AANFMLYIQSKTGGITGWEPAGAPSWIELLNPIEFLDEVIIEHDYVECTASALKAMTLFQKLYPKHKKNEVNNFITNGVK  161 (239)
Q Consensus        82 av~~Ll~~Q~~dGgw~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~~i~ra~~  161 (239)
                      ||+||+++||+||||+.|+.+++..+++.+++.|.|.+.++|++++++|+++|++|..++...|+++..+++++|+||++
T Consensus       202 av~wLl~mQn~dGGw~afd~~~~~~~l~~~~~~~~~~~~~~D~s~~d~T~~~l~aL~~~~~~~p~~r~~~~~~~i~ral~  281 (448)
T d1w6ka1         202 AVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLE  281 (448)
T ss_dssp             HHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCeeeccCCCChhhhhcccchhhhhccccCCCcchHHHHHHHHHHHHhhhCCccccccchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcccCCCCccCCCCcchhhHHHHHHHHHHHcCccCC---CHHHHHHHHHHHHhccCCCCccCCCCCcCCCCcccc
Q 026400          162 FTEDSQKLDGSWYGTWGVCFIYSTWWAISGLVAAEKTYS---NCLAIRKATDFLLNIQCDDGGWGESYLSCPNKLHMN  236 (239)
Q Consensus       162 ~L~~~Q~~dG~w~g~~g~~~~~~T~~al~aL~~~g~~~~---~~~~i~~a~~~L~~~Q~~dGgWg~~~~s~~~~~y~~  236 (239)
                      ||++.|++||+|.+.||.+++|+|+++|.||..+|....   ..+.|+||++||+++|++||||++.+.|+.++.|..
T Consensus       282 yL~~~Q~~DGsW~g~wg~~~~ygT~~al~aL~~~G~~~~~~~~~~~v~ka~~wLls~Q~~DGGWge~~~s~~~~~~~~  359 (448)
T d1w6ka1         282 FCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQ  359 (448)
T ss_dssp             HHHHHSCTTSCCCCSSBSSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCB
T ss_pred             HHHccCCCCCcccccCCCcccHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHhccCCCCCccCCCccccCcccCC
Confidence            999999999999999999999999999999999986531   248999999999999999999999998888877753
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Back     information, alignment and structure
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ulva1 a.102.1.5 (A:274-686) Glucodextranase, domain A {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal domain {Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]} Back     information, alignment and structure
>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal domain {Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]} Back     information, alignment and structure
>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ia6a_ a.102.1.2 (A:) Nonprocessive cellulase Cel9M {Clostridium cellulolyticum [TaxId: 1521]} Back     information, alignment and structure
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure