Citrus Sinensis ID: 026402

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGLLLLVGSFKLDHD
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccccccEEEHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccHccHHHHHHHHHHccccccccHHHHcHHHHHHHHHHHHHHHHHcccHHHccHHHHHHHHHHcEcccccEEccccccEcHHHHHHHHHHHHHcccHHHccHHHHHHHHHHcEcccccEEccccccEcHHHHHHHHHHHHHHccHHHccHHHHHHHHHHcEcccccEcccccccccHHHHHHHHHHHHHcccHHHccHHHHHHHHHccEcccccEcccccccccHHHHHHHHHcHHHcc
Coil and Loop (DISEMBL)
MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDIlgkldavdeEDVISWILKCqdesggfagnighdphVLYTLSAVQVLALFDkvdildadkvSNYIVGLqnedgsfsgdiwgevdTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKnldggfgctpggeshsgqiFCCVGALAIAGALHHVDKDLLGWWLCERQvksgglngrpeklpdvGLLLLVgsfkldhd
Flexible Loop (DISEMBL)
mgelaadkhvkyiisvekkkdsfESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSgglngrpeklpdvgLLLLVGSFKLDHD
Low Complexity Region (SEG)
MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGLLLLVGSFKLDHD
Disordered region (IsUnstruct)
********HVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGLLLLVGSF*****
Disordered Region (DISOPRED)
MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGLLLLVGSFKLD**
Disordered Region (DISEMBL)
MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGLLLLVGSFKLDHD
Disordered Region (DISPRO)
MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGLLLLVGSFKLDH*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGLLLLVGSFKLDHD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	239	2.2.26 [Sep-21-2011]
P53611	331	Geranylgeranyl transferas	yes	no	0.924	0.667	0.590	5e-81
Q5E9B3	331	Geranylgeranyl transferas	yes	no	0.924	0.667	0.585	2e-80
P53612	339	Geranylgeranyl transferas	yes	no	0.924	0.651	0.590	5e-80
Q08603	331	Geranylgeranyl transferas	yes	no	0.924	0.667	0.585	6e-80
B0G172	339	Probable geranylgeranyl t	yes	no	0.933	0.657	0.609	3e-74
P41992	335	Probable geranylgeranyl t	no	no	0.928	0.662	0.497	3e-64
P46960	311	Geranylgeranyl transferas	yes	no	0.933	0.717	0.504	3e-63
P20133	325	Geranylgeranyl transferas	yes	no	0.928	0.683	0.528	2e-60
O93830	341	Geranylgeranyl transferas	N/A	no	0.907	0.636	0.493	1e-51
O13782	382	Protein farnesyltransfera	no	no	0.899	0.562	0.333	6e-27

>sp|P53611|PGTB2_HUMAN Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens GN=RABGGTB PE=1 SV=2

 Score =  300 bits (769), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 131/222 (59%), Positives = 175/222 (78%)

Query: 4   LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
           L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  ++ E+++++I  
Sbjct: 18  LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILAFIKS 77

Query: 64  CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
           CQ E GG + +IGHDPH+LYTLSAVQ+L L+D ++++D +KV  Y+ GLQ EDGSF+GDI
Sbjct: 78  CQHECGGISASIGHDPHLLYTLSAVQILTLYDSINVIDVNKVVEYVKGLQKEDGSFAGDI 137

Query: 124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
           WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct: 138 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197

Query: 184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
            G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct: 198 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 239

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to both cysteines in Rab proteins with an -XXCC, -XCXC and -CCXX C-terminal, such as RAB1A, RAB3A and RAB5A respectively.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 6EC: 0

>sp|Q5E9B3|PGTB2_BOVIN Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus GN=RABGGTB PE=2 SV=1

 Score =  298 bits (764), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 130/222 (58%), Positives = 174/222 (78%)

Query: 4   LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
           L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  ++ E+++++I  
Sbjct: 18  LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILTFIKS 77

Query: 64  CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
           CQ E GG + +IGHDPH+LYTLSAVQ+L L+D ++++D +KV  Y+  LQ EDGSF+GDI
Sbjct: 78  CQHECGGISASIGHDPHLLYTLSAVQILTLYDSINVIDINKVVEYVQSLQKEDGSFAGDI 137

Query: 124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
           WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct: 138 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197

Query: 184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
            G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct: 198 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 239

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to both cysteines in Rab proteins with an -XXCC, -XCXC and -CCXX C-terminal, such as RAB1A, RAB3A and RAB5A respectively.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|P53612|PGTB2_MOUSE Geranylgeranyl transferase type-2 subunit beta OS=Mus musculus GN=Rabggtb PE=1 SV=2

 Score =  297 bits (760), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 131/222 (59%), Positives = 172/222 (77%)

Query: 4   LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
           L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  ++ E+++ +I  
Sbjct: 26  LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNREEILVFIKS 85

Query: 64  CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
           CQ E GG + +IGHDPH+LYTLSAVQ+L L+D V +++ DKV  Y+  LQ EDGSF+GDI
Sbjct: 86  CQHECGGISASIGHDPHLLYTLSAVQILTLYDSVHVINVDKVVAYVQSLQKEDGSFAGDI 145

Query: 124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
           WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct: 146 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 205

Query: 184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
            G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct: 206 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 247

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to both cysteines in Rab proteins with an -XXCC, -XCXC and -CCXX C-terminal, such as RAB1A, RAB3A and RAB5A respectively.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|Q08603|PGTB2_RAT Geranylgeranyl transferase type-2 subunit beta OS=Rattus norvegicus GN=Rabggtb PE=1 SV=1

 Score =  296 bits (759), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 130/222 (58%), Positives = 173/222 (77%)

Query: 4   LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
           L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  +++E+++ +I  
Sbjct: 18  LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKS 77

Query: 64  CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
           CQ E GG + +IGHDPH+LYTLSAVQ+L L+D + +++ DKV  Y+  LQ EDGSF+GDI
Sbjct: 78  CQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDI 137

Query: 124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
           WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct: 138 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197

Query: 184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
            G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct: 198 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 239

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to both cysteines in Rab proteins with an -XXCC, -XCXC and -CCXX C-terminal, such as RAB1A, RAB3A and RAB5A respectively.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|B0G172|PGTB2_DICDI Probable geranylgeranyl transferase type-2 subunit beta OS=Dictyostelium discoideum GN=rabggtb PE=3 SV=1

 Score =  278 bits (710), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 136/223 (60%), Positives = 169/223 (75%)

Query: 3   ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWIL 62
            L  DKHV+YI+ +  KKDSFE  V EH+R+NG YWGL++L +L  LD +D+ +VI W+L
Sbjct: 21  NLLIDKHVEYIVKLGSKKDSFEYWVTEHIRMNGMYWGLSSLYLLKSLDKLDKNEVIQWLL 80

Query: 63  KCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGD 122
            CQ  +GGF GN  HD H+L TLSAVQ+L  +D +D +D + V +Y+V LQ EDGSF GD
Sbjct: 81  SCQKSNGGFGGNTSHDDHLLSTLSAVQILIQYDALDKIDINSVVDYVVKLQREDGSFVGD 140

Query: 123 IWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFC 182
            WGEVDTRFSY AI CLS+L+ LDKIN +KAVEYI+SC+N DGGFG  PG ESH+GQIF 
Sbjct: 141 QWGEVDTRFSYAAIMCLSLLKSLDKINCEKAVEYILSCQNFDGGFGSIPGAESHAGQIFT 200

Query: 183 CVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           CVGAL+I   ++ +D D LGWWL ERQ+ +GGLNGRPEK  DV
Sbjct: 201 CVGALSILNEINKIDIDKLGWWLSERQLPNGGLNGRPEKSSDV 243

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to both cysteines in Rab proteins with an -XXCC, -XCXC and -CCXX C-terminal.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|P41992|GGTB2_CAEEL Probable geranylgeranyl transferase type-2 subunit beta OS=Caenorhabditis elegans GN=ggtb-1 PE=3 SV=2

 Score =  244 bits (624), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 111/223 (49%), Positives = 154/223 (69%)

Query: 3   ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWIL 62
           EL  D H  +I   EK K+S+  ++ EHLR++G YW +  +D+  +L+ +  E++++++L
Sbjct: 23  ELLKDLHANFINQYEKNKNSYHYIMAEHLRVSGIYWCVNAMDLSKQLERMSTEEIVNYVL 82

Query: 63  KCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGD 122
            C++  GG+    GHD H+L+TL AVQ L +F+ ++  DAD +S Y+ GLQ EDGSF GD
Sbjct: 83  GCRNTDGGYGPAPGHDSHLLHTLCAVQTLIIFNSIEKADADTISEYVKGLQQEDGSFCGD 142

Query: 123 IWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFC 182
           + GEVDTRF+  ++    +L RL  +N+D AV +++ C N DGGFG  PG ESHSGQI+C
Sbjct: 143 LSGEVDTRFTLCSLATCHLLGRLSTLNIDSAVRFLMRCYNTDGGFGTRPGSESHSGQIYC 202

Query: 183 CVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           CVGALAIAG L  +D+D    WL  RQ  SGGLNGRPEKLPDV
Sbjct: 203 CVGALAIAGRLDEIDRDRTAEWLAFRQCDSGGLNGRPEKLPDV 245

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to both cysteines in Rab proteins with an -XXCC, -XCXC and -CCXX C-terminal.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|P46960|PGTB2_SCHPO Geranylgeranyl transferase type-2 subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ptb1 PE=3 SV=1

 Score =  241 bits (615), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 113/224 (50%), Positives = 152/224 (67%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           M  L  DKH+ Y+  +  + D  +  + EHL ++  YW   +  +L K D +D+E ++S+
Sbjct: 1   MAVLLRDKHISYLHDIGNRTDELDFWLKEHLHVSAIYWSCMSFWLLKKKDQIDKERIVSF 60

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           +L C  ESGGFA   GHD H+  T+ AVQVLA+ D + ++D DKV++YI+GLQNEDGS  
Sbjct: 61  LLSCLTESGGFACYPGHDDHITNTVYAVQVLAMLDSLHVVDKDKVASYIIGLQNEDGSMK 120

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           GD WGE+D RF Y  I CL+IL +LD +N + AV++++ C N DGGFG  PG ESH   +
Sbjct: 121 GDRWGEIDARFLYSGINCLAILGKLDYLNKNTAVDWLMKCYNFDGGFGLCPGAESHGAMV 180

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPD 224
           F CV AL I   L  +D++LLGWW+ ERQVK GGLNGRPEKLPD
Sbjct: 181 FTCVAALKILNKLDLIDEELLGWWISERQVKGGGLNGRPEKLPD 224

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to proteins having the C-terminal -XCC or -XCXC, where both cysteines may become modified.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|P20133|PGTB2_YEAST Geranylgeranyl transferase type-2 subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BET2 PE=1 SV=3

 Score =  232 bits (591), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 121/229 (52%), Positives = 154/229 (67%), Gaps = 7/229 (3%)

Query: 4   LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
           L  +KH++YI S++ KK +FE  + EHLRLNG YWGLT L +L   +   +E+VIS++L 
Sbjct: 7   LLKEKHIRYIESLDTKKHNFEYWLTEHLRLNGIYWGLTALCVLDSPETFVKEEVISFVLS 66

Query: 64  CQDES-GGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADK---VSNYIVGLQNEDGSF 119
           C D+  G FA    HD H+L TLSAVQ+LA +D +D+L  D+   + ++I G Q EDGSF
Sbjct: 67  CWDDKYGAFAPFPRHDAHLLTTLSAVQILATYDALDVLGKDRKVRLISFIRGNQLEDGSF 126

Query: 120 SGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQ 179
            GD +GEVDTRF Y A+  LSIL  L    VD AV++++ C N DGGFG  P  ESH+ Q
Sbjct: 127 QGDRFGEVDTRFVYTALSALSILGELTSEVVDPAVDFVLKCYNFDGGFGLCPNAESHAAQ 186

Query: 180 IFCCVGALAIAGALHHVDKDLL---GWWLCERQVKSGGLNGRPEKLPDV 225
            F C+GALAIA  L  +  D L   GWWLCERQ+  GGLNGRP KLPDV
Sbjct: 187 AFTCLGALAIANKLDMLSDDQLEEIGWWLCERQLPEGGLNGRPSKLPDV 235

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to proteins having the C-terminal -XCC or -XCXC, where both cysteines may become modified. Acts on YPT1 and SEC4.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|O93830|PGTB2_CANAX Geranylgeranyl transferase type-2 subunit beta OS=Candida albicans GN=BET2 PE=3 SV=1

 Score =  202 bits (515), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 116/235 (49%), Positives = 149/235 (63%), Gaps = 18/235 (7%)

Query: 8   KHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKC-QD 66
           KHV+YI+  E  + SFE  + EHLR+NG YWG+T L  + +L A+ ++DVI +I+ C  D
Sbjct: 17  KHVQYIVEQESHR-SFEYWLSEHLRMNGLYWGVTALITMNELSALAQQDVIDYIMLCWDD 75

Query: 67  ESGGFAGNIGHDPHVLYTLSAVQVLALFDK-VDIL-DADKVSN---------YIVGLQNE 115
           ++G F     HD H+L TLSA+QVL ++D+ + +L D ++ SN         +I GLQ  
Sbjct: 76  KTGAFGSFPKHDGHILSTLSALQVLKIYDQELTVLNDNNESSNGNKRERLIKFITGLQLP 135

Query: 116 DGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGES 175
           DGSF GD +GEVDTRF Y A+  LS+L  L     D A  +I+ C N DGGFG  PG ES
Sbjct: 136 DGSFQGDKYGEVDTRFVYTAVSSLSLLNALTDSIADTASAFIMQCFNFDGGFGLIPGSES 195

Query: 176 HSGQIFCCVGALAIAGALHHVD----KDLLGWWLCERQV-KSGGLNGRPEKLPDV 225
           H+ Q+F CVGALAI   L  +D    K  L  WL ERQV  SGG NGRPEKLPDV
Sbjct: 196 HAAQVFTCVGALAIMNKLDLLDVENKKVKLIDWLTERQVLPSGGFNGRPEKLPDV 250

Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to proteins having the C-terminal -XCC or -XCXC, where both cysteines may become modified. Acts on YPT1 and SEC4.

Candida albicans (taxid: 5476)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 0

>sp|O13782|FNTB_SCHPO Protein farnesyltransferase subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cpp1 PE=1 SV=1

 Score =  120 bits (302), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 122/225 (54%), Gaps = 10/225 (4%)

Query: 7   DKHVKYIISVEKKKDSFES--VVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKC 64
            KH+KY+    K  D   S   V++  R    YW L++L ILGKLD+   E  IS + + 
Sbjct: 32  QKHLKYLT---KMLDPLPSPFTVLDASRAWMVYWELSSLAILGKLDSSVCERAISSVRQL 88

Query: 65  QDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVD---ILDADKVSNYIVGLQNEDGSFSG 121
           +  SGGF G  G D H+L T +++  + L D  D   +++ D++ +++  L+N DGSF  
Sbjct: 89  KGPSGGFCGGNGQDEHLLSTYASILSICLCDSTDAYSLIERDRLYDWLFSLKNPDGSFRV 148

Query: 122 DIWGEVDTRFSYIAICCLSILQ-RLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           +  GE D R  Y A+C  S++   +D    +  ++++  C+  +GG    P  E+H G  
Sbjct: 149 NNEGESDARSVYAAVCVSSLVGISMDDPLFEGTLQWLCKCQTYEGGLSGVPYAEAHGGYT 208

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKS-GGLNGRPEKLPD 224
           FC + A+A+ G L ++++  L  WL +RQ  +  G +GR  KL D
Sbjct: 209 FCALAAIALLGGLDNLNEIKLSTWLVQRQDPALYGFSGRSNKLVD 253

Catalyzes the transfer of a farnesyl moiety from farnesyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
224125104	313	predicted protein [Populus trichocarpa]	0.937	0.715	0.857	1e-112
449436108	317	PREDICTED: geranylgeranyl transferase ty	0.937	0.706	0.831	1e-111
225436251	317	PREDICTED: geranylgeranyl transferase ty	0.937	0.706	0.822	1e-110
388518319	283	unknown [Lotus japonicus]	0.941	0.795	0.822	1e-109
255574367	306	geranylgeranyl transferase type II beta	0.937	0.732	0.831	1e-108
34148075	317	putative Rab geranylgeranyl transferase	0.937	0.706	0.817	1e-108
217072034	247	unknown [Medicago truncatula]	0.941	0.910	0.817	1e-108
363806846	317	uncharacterized protein LOC100793642 [Gl	0.937	0.706	0.813	1e-107
225447413	317	PREDICTED: geranylgeranyl transferase ty	0.937	0.706	0.804	1e-107
356512465	320	PREDICTED: geranylgeranyl transferase ty	0.941	0.703	0.784	1e-105

>gi|224125104|ref|XP_002319501.1| predicted protein [Populus trichocarpa] gi|222857877|gb|EEE95424.1| predicted protein [Populus trichocarpa]

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 193/225 (85%), Positives = 212/225 (94%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           MGEL  DKHVKYI+SVEK+KDSFESVV+EHLR+NGAYWGL TLD+LGKLDA+D  +VI W
Sbjct: 1   MGELVVDKHVKYILSVEKRKDSFESVVLEHLRMNGAYWGLATLDLLGKLDALDSNEVIEW 60

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           I+KCQ ESGGFAGNIGHDPH+LYTLSAVQVLALFDK+++LDADKV+NYI GLQNEDGSFS
Sbjct: 61  IMKCQHESGGFAGNIGHDPHMLYTLSAVQVLALFDKLNVLDADKVANYISGLQNEDGSFS 120

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           GD WGEVD+RFSY+AICCLSIL RLDKINV+KAV YI SCKN+DGGFGCTPGGESH+GQI
Sbjct: 121 GDEWGEVDSRFSYLAICCLSILHRLDKINVEKAVNYIASCKNVDGGFGCTPGGESHAGQI 180

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           FCCVGALAI G+LHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV
Sbjct: 181 FCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436108|ref|XP_004135836.1| PREDICTED: geranylgeranyl transferase type-2 subunit beta-like [Cucumis sativus] gi|449490992|ref|XP_004158768.1| PREDICTED: geranylgeranyl transferase type-2 subunit beta-like [Cucumis sativus]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 187/225 (83%), Positives = 213/225 (94%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           MGELA +KHV+YI+SVEKKKD F+SVVMEHLR+NGAYWGLT LDILGKLD VD ++V+SW
Sbjct: 1   MGELATEKHVQYILSVEKKKDDFQSVVMEHLRMNGAYWGLTALDILGKLDTVDADEVVSW 60

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           ++ CQ ESGGF+GN+GHDPH+LYTLSAVQVLALFDK+D+LD DKV+NY+VGLQNEDGSFS
Sbjct: 61  VMSCQHESGGFSGNVGHDPHILYTLSAVQVLALFDKLDVLDVDKVTNYVVGLQNEDGSFS 120

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           GDIWGEVD+RFSYIAI CLS+L +LDKINV+KAV ++VSCKN+DGGFGCTPGGESHSGQI
Sbjct: 121 GDIWGEVDSRFSYIAILCLSLLHQLDKINVEKAVNFVVSCKNMDGGFGCTPGGESHSGQI 180

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           FCCVGALA+ G+LHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV
Sbjct: 181 FCCVGALALTGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436251|ref|XP_002275861.1| PREDICTED: geranylgeranyl transferase type-2 subunit beta [Vitis vinifera] gi|147860391|emb|CAN82570.1| hypothetical protein VITISV_016117 [Vitis vinifera] gi|296090220|emb|CBI40039.3| unnamed protein product [Vitis vinifera]

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 185/225 (82%), Positives = 212/225 (94%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           +G+L  +KHV+YI+SVEK+KD+FESVVMEHLR+NGAYWGLTTLD+LGKLD VDE+++ISW
Sbjct: 5   IGDLEVEKHVQYILSVEKRKDNFESVVMEHLRMNGAYWGLTTLDLLGKLDMVDEDEIISW 64

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           +++CQ ESGGF GN+GHDPH+LYTLSAVQVLALFDK+++LD DKVSNYI GLQNEDGSFS
Sbjct: 65  VMECQHESGGFGGNVGHDPHILYTLSAVQVLALFDKLNVLDIDKVSNYIAGLQNEDGSFS 124

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           GD+WGE+DTRFSYIAIC LS+LQRLDKINV+KAV YIVSCKNLDGGFGCTPG ESH+GQI
Sbjct: 125 GDMWGEIDTRFSYIAICSLSLLQRLDKINVEKAVNYIVSCKNLDGGFGCTPGAESHAGQI 184

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           FCCV ALA+ G+LHHVDKDLLGWWLCERQVKSG LNGRPEKLPDV
Sbjct: 185 FCCVSALALTGSLHHVDKDLLGWWLCERQVKSGALNGRPEKLPDV 229

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518319|gb|AFK47221.1| unknown [Lotus japonicus]

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 185/225 (82%), Positives = 211/225 (93%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           MGEL ++KHV+YI+SVEK+KD+FESVVMEHLR+NGAYWGLT LD+LGKL  VD ++V+SW
Sbjct: 1   MGELVSEKHVRYILSVEKRKDNFESVVMEHLRMNGAYWGLTALDLLGKLHTVDVDEVVSW 60

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           ++ CQDESGGFAGN+GHDPH+LYTLSAVQVLALFDK+  +D D+V+NYIV LQNEDGSFS
Sbjct: 61  VMSCQDESGGFAGNVGHDPHILYTLSAVQVLALFDKLYAIDVDRVTNYIVSLQNEDGSFS 120

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           GD WGEVDTRFSYIAICCLSIL+RLDKINV+KAV+YI+SCKN+DGGFGCTPGGESH+GQI
Sbjct: 121 GDTWGEVDTRFSYIAICCLSILRRLDKINVEKAVKYIISCKNMDGGFGCTPGGESHAGQI 180

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           FCCVGALAI G+L  VDKDLLGWWLCERQVKSGGLNGRPEKLPDV
Sbjct: 181 FCCVGALAITGSLDLVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574367|ref|XP_002528097.1| geranylgeranyl transferase type II beta subunit, putative [Ricinus communis] gi|223532486|gb|EEF34276.1| geranylgeranyl transferase type II beta subunit, putative [Ricinus communis]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 187/225 (83%), Positives = 207/225 (92%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           MGELA DKHV+YIISVEKK DSFE VVMEHLR+NGAYWGL TLD+LGKLD VD  +VI W
Sbjct: 1   MGELAVDKHVEYIISVEKKNDSFEYVVMEHLRMNGAYWGLATLDLLGKLDVVDSSEVIDW 60

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           I++CQ ESGGFAGNIGHDPH+LYTLSAVQVLALF+K+++LD DKVSNY+ GLQNEDGSFS
Sbjct: 61  IMQCQHESGGFAGNIGHDPHILYTLSAVQVLALFNKLNVLDIDKVSNYVAGLQNEDGSFS 120

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           GD+WGE DTRFSYI ICCLS+L  LDKINV+KAV YI+SCKN+DGGFG +PGGESH+GQI
Sbjct: 121 GDMWGEADTRFSYIGICCLSLLHCLDKINVEKAVNYILSCKNVDGGFGSSPGGESHAGQI 180

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           FCCVGALAI G+LHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV
Sbjct: 181 FCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|34148075|gb|AAQ62584.1| putative Rab geranylgeranyl transferase type II beta subunit [Glycine max]

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 184/225 (81%), Positives = 212/225 (94%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           MGELA +KHV+YI+SVEK+KD+FESVVMEHLR+NGAYWGLTTLD+LGKL +VD ++V+SW
Sbjct: 1   MGELATEKHVRYILSVEKRKDNFESVVMEHLRMNGAYWGLTTLDLLGKLHSVDVDEVVSW 60

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           ++ CQ ESGGF GN+GHDPH+LYTLSAVQVLALFDK++++D DKV++YIV LQNEDGSFS
Sbjct: 61  LMSCQHESGGFGGNVGHDPHILYTLSAVQVLALFDKLNVIDVDKVTSYIVSLQNEDGSFS 120

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           GD+WGEVDTRFSYIAICCLSIL  LDKINV+KAV+YI+SCKN+DGGFGCTPGGESH+GQI
Sbjct: 121 GDMWGEVDTRFSYIAICCLSILHCLDKINVEKAVKYIISCKNMDGGFGCTPGGESHAGQI 180

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           FCCVGALAI G+L  VDKDLLGWWLCERQVKSGGLNGRPEKLPDV
Sbjct: 181 FCCVGALAITGSLDLVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072034|gb|ACJ84377.1| unknown [Medicago truncatula]

 Score =  395 bits (1014), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 184/225 (81%), Positives = 210/225 (93%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           MGEL A+K ++YI+S+EKKKDSFESVVMEHLR+NGAYWGLTTLD+LGKLD VD ++V+SW
Sbjct: 1   MGELVAEKRLRYILSIEKKKDSFESVVMEHLRMNGAYWGLTTLDLLGKLDTVDVDEVVSW 60

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           I+ C    GGFAGN+GHDPH+LYTLSAVQVLALF+K+ ++DADKV+NYIV LQNEDGSFS
Sbjct: 61  IISCHHHDGGFAGNVGHDPHILYTLSAVQVLALFNKLHLIDADKVTNYIVSLQNEDGSFS 120

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           GDIWGEVDTRFSYIAICCLSIL+RLD+INV+ AV+YI+SCKN+DGGFGCTPGGESH+GQI
Sbjct: 121 GDIWGEVDTRFSYIAICCLSILRRLDRINVENAVKYIISCKNMDGGFGCTPGGESHAGQI 180

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           FCCVGALAI G+L  VDKDLLGWWLCERQVKSGGLNGRPEKLPDV
Sbjct: 181 FCCVGALAITGSLDLVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806846|ref|NP_001242036.1| uncharacterized protein LOC100793642 [Glycine max] gi|255635594|gb|ACU18147.1| unknown [Glycine max]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 183/225 (81%), Positives = 211/225 (93%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           MGELA +KHV+YI+SVEK+KD+FESVVMEHLR+NGAYWGLTTLD+LGKL +VD ++V+SW
Sbjct: 1   MGELATEKHVRYILSVEKRKDNFESVVMEHLRMNGAYWGLTTLDLLGKLHSVDVDEVVSW 60

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           ++ CQ ESGGF GN+GHDPH+LYTLSAVQVLALFDK++++D DKV++YIV LQNEDGSFS
Sbjct: 61  LMSCQHESGGFGGNVGHDPHILYTLSAVQVLALFDKLNVIDVDKVTSYIVSLQNEDGSFS 120

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           GD+WGEVDTRFSYI ICCLSIL  LDKINV+KAV+YI+SCKN+DGGFGCTPGGESH+GQI
Sbjct: 121 GDMWGEVDTRFSYIVICCLSILHCLDKINVEKAVKYIISCKNMDGGFGCTPGGESHAGQI 180

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           FCCVGALAI G+L  VDKDLLGWWLCERQVKSGGLNGRPEKLPDV
Sbjct: 181 FCCVGALAITGSLDLVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447413|ref|XP_002281543.1| PREDICTED: geranylgeranyl transferase type-2 subunit beta [Vitis vinifera] gi|147821440|emb|CAN74579.1| hypothetical protein VITISV_024797 [Vitis vinifera] gi|296081232|emb|CBI17976.3| unnamed protein product [Vitis vinifera]

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 181/225 (80%), Positives = 211/225 (93%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           +GEL A+KHV+YI+ VEK+KD FESVV EHLR+NGAYWGLTTLD+LGKL+ VD+++V+SW
Sbjct: 5   IGELEAEKHVQYILLVEKRKDDFESVVTEHLRMNGAYWGLTTLDLLGKLEIVDQDEVVSW 64

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           +++CQ ESGGF GNIGHDPH+++TLSAVQVLALFDK+++LD DK++NYI GLQN DGSFS
Sbjct: 65  VMECQHESGGFGGNIGHDPHIVHTLSAVQVLALFDKLNVLDIDKITNYIAGLQNVDGSFS 124

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           GD+WGE+DTRFSYIAICCLS+LQ LDKINV+KAV YIVSCKNLDGGFGCTPG ESH+GQI
Sbjct: 125 GDMWGEIDTRFSYIAICCLSLLQCLDKINVEKAVNYIVSCKNLDGGFGCTPGAESHAGQI 184

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           FCCVGALA+ G+LHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV
Sbjct: 185 FCCVGALALTGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 229

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512465|ref|XP_003524939.1| PREDICTED: geranylgeranyl transferase type-2 subunit beta-like [Glycine max]

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 182/232 (78%), Positives = 210/232 (90%), Gaps = 7/232 (3%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           MGELA +KHV+YI+SVEK+KD+FESVVMEHLR+NGAYWGLTTLD+LGKL  VD ++V+SW
Sbjct: 1   MGELATEKHVRYILSVEKRKDNFESVVMEHLRMNGAYWGLTTLDLLGKLHTVDVDEVVSW 60

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           ++ CQ +SGGF GN+ HDPH+LYTLSAVQVL+LFDK+D++D DKV++YIV LQNEDGSFS
Sbjct: 61  LMSCQHDSGGFGGNVEHDPHILYTLSAVQVLSLFDKLDVIDVDKVTSYIVSLQNEDGSFS 120

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEY-------IVSCKNLDGGFGCTPGG 173
           GD+WGEVDTRFSYIAICCLSIL RLDKINV+KAV+Y        +SCKN+DGGFGCTPGG
Sbjct: 121 GDMWGEVDTRFSYIAICCLSILHRLDKINVEKAVKYIIFFFFGFISCKNMDGGFGCTPGG 180

Query: 174 ESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           ESH+GQIFCCVGALAI G+L  VDKDLLGWWLCERQVKSGGLNGRPEKLPDV
Sbjct: 181 ESHAGQIFCCVGALAITGSLDLVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 232

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
TAIR|locus:2177058	321	RGTB1 "RAB geranylgeranyl tran	0.941	0.700	0.8	1.1e-101
TAIR|locus:2088614	317	RGTB2 "RAB geranylgeranyl tran	0.933	0.703	0.796	5e-99
UNIPROTKB|P53611	331	RABGGTB "Geranylgeranyl transf	0.928	0.670	0.590	1.3e-77
ZFIN|ZDB-GENE-040426-2116	331	rabggtb "Rab geranylgeranyltra	0.928	0.670	0.594	1.3e-77
UNIPROTKB|F1P6X0	331	RABGGTB "Uncharacterized prote	0.928	0.670	0.585	5.5e-77
UNIPROTKB|G8JKY6	331	RABGGTB "Geranylgeranyl transf	0.928	0.670	0.585	7.1e-77
UNIPROTKB|Q5E9B3	331	RABGGTB "Geranylgeranyl transf	0.928	0.670	0.585	7.1e-77
MGI|MGI:99537	339	Rabggtb "RAB geranylgeranyl tr	0.928	0.654	0.590	1.9e-76
RGD|3530	331	Rabggtb "Rab geranylgeranyltra	0.928	0.670	0.585	2.4e-76
UNIPROTKB|F1LSM6	331	Rabggtb "Geranylgeranyl transf	0.928	0.670	0.585	2.4e-76

TAIR|locus:2177058 RGTB1 "RAB geranylgeranyl transferase beta subunit 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1008 (359.9 bits), Expect = 1.1e-101, P = 1.1e-101
 Identities = 180/225 (80%), Positives = 205/225 (91%)

Query:     1 MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
             M +L ADKHV+YI+  EKKK+SFESVVM+HLR+NGAYWGLTTLD+L KL  V EE+VISW
Sbjct:     9 MVQLVADKHVRYILMAEKKKESFESVVMDHLRMNGAYWGLTTLDLLDKLGCVSEEEVISW 68

Query:    61 ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
             ++ CQ ESGGFAGN GHDPH+LYTLSAVQ+LALFDK++ILD  KVS+Y+  LQNEDGSFS
Sbjct:    69 LMTCQHESGGFAGNTGHDPHILYTLSAVQILALFDKINILDIGKVSSYVAKLQNEDGSFS 128

Query:   121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
             GD+WGE+DTRFSYIAICCLSIL+ LDKINV+KAV+YIVSCKNLDGGFGCTPG ESH+GQI
Sbjct:   129 GDMWGEIDTRFSYIAICCLSILKCLDKINVEKAVKYIVSCKNLDGGFGCTPGAESHAGQI 188

Query:   181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
             FCCVGALAI G+LHHVDKD LGWWLCERQ+K+GGLNGRPEKL DV
Sbjct:   189 FCCVGALAITGSLHHVDKDSLGWWLCERQLKAGGLNGRPEKLADV 233

GO:0003824 "catalytic activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2088614 RGTB2 "RAB geranylgeranyl transferase beta subunit 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 983 (351.1 bits), Expect = 5.0e-99, P = 5.0e-99
 Identities = 180/226 (79%), Positives = 205/226 (90%)

Query:     3 ELAADKHVKYIISV--EKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
             +L A KH++YI+++  EKKK+SFESVVM+HLR+NGAYWGLTTL +L KL +V E++V+SW
Sbjct:     4 KLVAGKHLRYILNLMAEKKKESFESVVMDHLRMNGAYWGLTTLALLDKLGSVSEDEVVSW 63

Query:    61 ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
             ++ CQ ESGGFAGN GHDPHVLYTLSAVQ+LALFDK++ILD +KVSNYI GLQNEDGSFS
Sbjct:    64 VMTCQHESGGFAGNTGHDPHVLYTLSAVQILALFDKLNILDVEKVSNYIAGLQNEDGSFS 123

Query:   121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
             GDIWGEVDTRFSYIAICCLSIL+ LDKINV KAV+YIVSCKNLDGGFGC+PG ESH+GQI
Sbjct:   124 GDIWGEVDTRFSYIAICCLSILKCLDKINVKKAVDYIVSCKNLDGGFGCSPGAESHAGQI 183

Query:   181 FCCVGALAIAGALHHVDKDLLGWWLCERQ-VKSGGLNGRPEKLPDV 225
             FCCVGALAI G LH VDKDLLGWWLCERQ  +SGGLNGRPEKLPDV
Sbjct:   184 FCCVGALAITGNLHRVDKDLLGWWLCERQDYESGGLNGRPEKLPDV 229

GO:0003824 "catalytic activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|P53611 RABGGTB "Geranylgeranyl transferase type-2 subunit beta" [Homo sapiens (taxid:9606)]

 Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
 Identities = 131/222 (59%), Positives = 175/222 (78%)

Query:     4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
             L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  ++ E+++++I  
Sbjct:    18 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILAFIKS 77

Query:    64 CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
             CQ E GG + +IGHDPH+LYTLSAVQ+L L+D ++++D +KV  Y+ GLQ EDGSF+GDI
Sbjct:    78 CQHECGGISASIGHDPHLLYTLSAVQILTLYDSINVIDVNKVVEYVKGLQKEDGSFAGDI 137

Query:   124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
             WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct:   138 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197

Query:   184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
              G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct:   198 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 239

GO:0018344 "protein geranylgeranylation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=NAS

GO:0007601 "visual perception" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-040426-2116 rabggtb "Rab geranylgeranyltransferase, beta subunit" [Danio rerio (taxid:7955)]

 Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
 Identities = 132/222 (59%), Positives = 174/222 (78%)

Query:     4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
             L  DKH  YI +   KKD +E  + E+LR++G YWGLT +D++G+L  ++ E++I +I  
Sbjct:    18 LFLDKHADYIAAYGSKKDDYEYTLSEYLRMSGIYWGLTVMDLMGQLSRMNREEIIEFIKS 77

Query:    64 CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
             CQ + GG + +IGHDPH+LYTLSA+Q+L+L+D V+ +D DKV  Y+ GLQ EDGSF+GD 
Sbjct:    78 CQHDCGGISASIGHDPHLLYTLSAIQILSLYDSVNAIDVDKVVEYVKGLQQEDGSFAGDK 137

Query:   124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
             WGE+DTRFS+ A+  L++L +LD INVDKAVE+++SC N DGGFGC PG ESH+GQI+CC
Sbjct:   138 WGEIDTRFSFCAVATLALLGKLDVINVDKAVEFVMSCMNFDGGFGCRPGSESHAGQIYCC 197

Query:   184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
              G L++ G LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct:   198 TGFLSVTGQLHQVNADLLGWWLCERQLPSGGLNGRPEKLPDV 239

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0018344 "protein geranylgeranylation" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|F1P6X0 RABGGTB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
 Identities = 130/222 (58%), Positives = 174/222 (78%)

Query:     4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
             L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  ++ E+++++I  
Sbjct:    18 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILTFIKS 77

Query:    64 CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
             CQ E GG + +IGHDPH+LYTLSAVQ+L L+D ++++D +KV  Y+  LQ EDGSF+GDI
Sbjct:    78 CQHECGGISASIGHDPHLLYTLSAVQILTLYDSINVIDVNKVVEYVQSLQKEDGSFAGDI 137

Query:   124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
             WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct:   138 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197

Query:   184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
              G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct:   198 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 239

GO:0018344 "protein geranylgeranylation" evidence=IEA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

UNIPROTKB|G8JKY6 RABGGTB "Geranylgeranyl transferase type-2 subunit beta" [Bos taurus (taxid:9913)]

 Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
 Identities = 130/222 (58%), Positives = 174/222 (78%)

Query:     4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
             L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  ++ E+++++I  
Sbjct:    18 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILTFIKS 77

Query:    64 CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
             CQ E GG + +IGHDPH+LYTLSAVQ+L L+D ++++D +KV  Y+  LQ EDGSF+GDI
Sbjct:    78 CQHECGGISASIGHDPHLLYTLSAVQILTLYDSINVIDINKVVEYVQSLQKEDGSFAGDI 137

Query:   124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
             WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct:   138 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197

Query:   184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
              G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct:   198 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 239

GO:0018344 "protein geranylgeranylation" evidence=IEA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

UNIPROTKB|Q5E9B3 RABGGTB "Geranylgeranyl transferase type-2 subunit beta" [Bos taurus (taxid:9913)]

 Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
 Identities = 130/222 (58%), Positives = 174/222 (78%)

Query:     4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
             L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  ++ E+++++I  
Sbjct:    18 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILTFIKS 77

Query:    64 CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
             CQ E GG + +IGHDPH+LYTLSAVQ+L L+D ++++D +KV  Y+  LQ EDGSF+GDI
Sbjct:    78 CQHECGGISASIGHDPHLLYTLSAVQILTLYDSINVIDINKVVEYVQSLQKEDGSFAGDI 137

Query:   124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
             WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct:   138 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197

Query:   184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
              G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct:   198 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 239

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0018344 "protein geranylgeranylation" evidence=IEA

MGI|MGI:99537 Rabggtb "RAB geranylgeranyl transferase, b subunit" [Mus musculus (taxid:10090)]

 Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
 Identities = 131/222 (59%), Positives = 172/222 (77%)

Query:     4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
             L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  ++ E+++ +I  
Sbjct:    26 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNREEILVFIKS 85

Query:    64 CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
             CQ E GG + +IGHDPH+LYTLSAVQ+L L+D V +++ DKV  Y+  LQ EDGSF+GDI
Sbjct:    86 CQHECGGISASIGHDPHLLYTLSAVQILTLYDSVHVINVDKVVAYVQSLQKEDGSFAGDI 145

Query:   124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
             WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct:   146 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 205

Query:   184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
              G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct:   206 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 247

GO:0003824 "catalytic activity" evidence=IEA

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0018344 "protein geranylgeranylation" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

RGD|3530 Rabggtb "Rab geranylgeranyltransferase, beta subunit" [Rattus norvegicus (taxid:10116)]

 Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
 Identities = 130/222 (58%), Positives = 173/222 (77%)

Query:     4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
             L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  +++E+++ +I  
Sbjct:    18 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKS 77

Query:    64 CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
             CQ E GG + +IGHDPH+LYTLSAVQ+L L+D + +++ DKV  Y+  LQ EDGSF+GDI
Sbjct:    78 CQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDI 137

Query:   124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
             WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct:   138 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197

Query:   184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
              G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct:   198 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 239

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IDA

GO:0018344 "protein geranylgeranylation" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1LSM6 Rabggtb "Geranylgeranyl transferase type-2 subunit beta" [Rattus norvegicus (taxid:10116)]

 Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
 Identities = 130/222 (58%), Positives = 173/222 (77%)

Query:     4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
             L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  +++E+++ +I  
Sbjct:    18 LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKS 77

Query:    64 CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
             CQ E GG + +IGHDPH+LYTLSAVQ+L L+D + +++ DKV  Y+  LQ EDGSF+GDI
Sbjct:    78 CQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDI 137

Query:   124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
             WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct:   138 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197

Query:   184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
              G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct:   198 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 239

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0018344 "protein geranylgeranylation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5E9B3	PGTB2_BOVIN	2, ., 5, ., 1, ., 6, 0	0.5855	0.9246	0.6676	yes	no
Q08603	PGTB2_RAT	2, ., 5, ., 1, ., 6, 0	0.5855	0.9246	0.6676	yes	no
P20133	PGTB2_YEAST	2, ., 5, ., 1, ., 6, 0	0.5283	0.9288	0.6830	yes	no
P46960	PGTB2_SCHPO	2, ., 5, ., 1, ., 6, 0	0.5044	0.9330	0.7170	yes	no
B0G172	PGTB2_DICDI	2, ., 5, ., 1, ., 6, 0	0.6098	0.9330	0.6578	yes	no
P53612	PGTB2_MOUSE	2, ., 5, ., 1, ., 6, 0	0.5900	0.9246	0.6519	yes	no
P53611	PGTB2_HUMAN	2, ., 5, ., 1, ., 6, 0	0.5900	0.9246	0.6676	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.5.1.60	0.914
3rd Layer	2.5.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	239
PLN03201	316	PLN03201, PLN03201, RAB geranylgeranyl transferase	1e-168
cd02894	287	cd02894, GGTase-II, Geranylgeranyltransferase type	1e-129
cd02890	286	cd02890, PTase, Protein prenyltransferase (PTase)	1e-100
COG5029	342	COG5029, CAL1, Prenyltransferase, beta subunit [Po	2e-81
cd00688	300	cd00688, ISOPREN_C2_like, This group contains clas	5e-52
cd02893	299	cd02893, FTase, Protein farnesyltransferase (FTase	2e-47
cd02895	307	cd02895, GGTase-I, Geranylgeranyltransferase types	4e-43
PLN02710	439	PLN02710, PLN02710, farnesyltranstransferase subun	1e-29
pfam13249	112	pfam13249, Prenyltrans_2, Prenyltransferase-like	1e-22
cd02890	286	cd02890, PTase, Protein prenyltransferase (PTase)	1e-21
cd02894	287	cd02894, GGTase-II, Geranylgeranyltransferase type	1e-19
COG5029	342	COG5029, CAL1, Prenyltransferase, beta subunit [Po	1e-16
cd00688	300	cd00688, ISOPREN_C2_like, This group contains clas	5e-14
PLN03201	316	PLN03201, PLN03201, RAB geranylgeranyl transferase	3e-13
pfam00432	44	pfam00432, Prenyltrans, Prenyltransferase and squa	3e-12
cd02895	307	cd02895, GGTase-I, Geranylgeranyltransferase types	8e-12
pfam13249	112	pfam13249, Prenyltrans_2, Prenyltransferase-like	9e-12
pfam13249	112	pfam13249, Prenyltrans_2, Prenyltransferase-like	4e-11
pfam13243	109	pfam13243, Prenyltrans_1, Prenyltransferase-like	2e-10
pfam00432	44	pfam00432, Prenyltrans, Prenyltransferase and squa	1e-09
pfam00432	44	pfam00432, Prenyltrans, Prenyltransferase and squa	2e-09
cd00688	300	cd00688, ISOPREN_C2_like, This group contains clas	4e-09
PLN02710	439	PLN02710, PLN02710, farnesyltranstransferase subun	6e-09
pfam13249	112	pfam13249, Prenyltrans_2, Prenyltransferase-like	3e-08
COG5029	342	COG5029, CAL1, Prenyltransferase, beta subunit [Po	7e-07
pfam13243	109	pfam13243, Prenyltrans_1, Prenyltransferase-like	9e-06
cd02894	287	cd02894, GGTase-II, Geranylgeranyltransferase type	1e-05
cd02895	307	cd02895, GGTase-I, Geranylgeranyltransferase types	3e-05
TIGR01787	621	TIGR01787, squalene_cyclas, squalene/oxidosqualene	6e-05
cd02892	634	cd02892, SQCY_1, Squalene cyclase (SQCY) domain su	1e-04
cd02889	348	cd02889, SQCY, Squalene cyclase (SQCY) domain; fou	2e-04
COG1689	274	COG1689, COG1689, Uncharacterized protein conserve	2e-04
PLN03201	316	PLN03201, PLN03201, RAB geranylgeranyl transferase	0.002

>gnl|CDD|215630 PLN03201, PLN03201, RAB geranylgeranyl transferase beta-subunit; Provisional

 Score =  466 bits (1202), Expect = e-168
 Identities = 185/225 (82%), Positives = 211/225 (93%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           MGEL  DKHV+YI S+EKKKDSFESVVMEHLR+NGAYWGLT LD+LGKLD VD ++V+SW
Sbjct: 5   MGELVVDKHVRYIKSLEKKKDSFESVVMEHLRMNGAYWGLTALDLLGKLDDVDRDEVVSW 64

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           +++CQ ESGGF GN GHDPH+LYTLSAVQ+LALFD++D+LDADKV++Y+ GLQNEDGSFS
Sbjct: 65  VMRCQHESGGFGGNTGHDPHILYTLSAVQILALFDRLDLLDADKVASYVAGLQNEDGSFS 124

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           GD WGE+DTRFSY A+CCLS+L+RLDKINV+KAV+YIVSCKN DGGFGCTPGGESH+GQI
Sbjct: 125 GDEWGEIDTRFSYCALCCLSLLKRLDKINVEKAVDYIVSCKNFDGGFGCTPGGESHAGQI 184

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           FCCVGALAI G+LHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV
Sbjct: 185 FCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 229

Length = 316

>gnl|CDD|239224 cd02894, GGTase-II, Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score =  367 bits (944), Expect = e-129
 Identities = 142/225 (63%), Positives = 186/225 (82%), Gaps = 3/225 (1%)

Query: 4   LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
           L  +KH++YI+S+ KKKD +E ++ EHLR++G YWGLT LD+LG+L+ ++ E++I ++  
Sbjct: 1   LLLEKHIEYILSLTKKKDDYEYILTEHLRMSGIYWGLTALDLLGQLERLNREEIIEFVKS 60

Query: 64  CQD-ESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD--ADKVSNYIVGLQNEDGSFS 120
           CQD E GGF G+ GHDPH+L TLSA+Q+LAL+D ++ +D   +K++ +I GLQNEDGSFS
Sbjct: 61  CQDNEDGGFGGSPGHDPHILSTLSAIQILALYDLLNKIDENKEKIAKFIKGLQNEDGSFS 120

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           GD WGEVDTRFSY A+ CL++L +LD I+VDKAV+Y++SC N DGGFGC PG ESH+GQI
Sbjct: 121 GDKWGEVDTRFSYCAVLCLTLLGKLDLIDVDKAVDYLLSCYNFDGGFGCRPGAESHAGQI 180

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           FCCVGALAI G+L  +D+D LGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct: 181 FCCVGALAILGSLDLIDRDRLGWWLCERQLPSGGLNGRPEKLPDV 225

GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltransferases, GGTas-II requires an escort protein to bring the substrate protein to the catalytic heterodimer and to escort the geryanylgeranylated product to the membrane. Length = 287

>gnl|CDD|239220 cd02890, PTase, Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score =  291 bits (748), Expect = e-100
 Identities = 102/224 (45%), Positives = 141/224 (62%), Gaps = 6/224 (2%)

Query: 7   DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWILKCQ 65
           +KH+KY+    K   S     ++  RL   YW L++LD+LG+ LD  +++++I +I  CQ
Sbjct: 2   EKHIKYLQRCLKLLPS-SYTSLDASRLWLLYWILSSLDLLGEDLDDENKDEIIDFIYSCQ 60

Query: 66  -DESGGFAGNIGHDPHVLYTLSAVQVLALFDK--VDILDADKVSNYIVGLQNEDGSFSGD 122
            +E GGF G  G DPH+  T +AV  LA+     +  +D +K+  ++  LQN DGSF GD
Sbjct: 61  VNEDGGFGGGPGQDPHLASTYAAVLSLAILGDDALSRIDREKIYKFLSSLQNPDGSFRGD 120

Query: 123 IWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFC 182
           + GEVDTRF Y A+  LS+L  L  I+ +K ++YI+SC+N DGGFG  PG ESH G  FC
Sbjct: 121 LGGEVDTRFVYCALSILSLLNILTDIDKEKLIDYILSCQNYDGGFGGVPGAESHGGYTFC 180

Query: 183 CVGALAIAGALHHVDKDLLGWWLCERQVKSG-GLNGRPEKLPDV 225
            V +LA+ G L  +DK+ L  WL ERQ+ SG G NGRP KL D 
Sbjct: 181 AVASLALLGRLDLIDKERLLRWLVERQLASGGGFNGRPNKLVDT 224

The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltransferases, GGTase-II does not recognize its protein acceptor directly but requires Rab to complex with REP (Rab escort protein) before prenylation can occur. These enzymes are found exclusively in eukaryotes. Length = 286

>gnl|CDD|227362 COG5029, CAL1, Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]

 Score =  246 bits (630), Expect = 2e-81
 Identities = 100/228 (43%), Positives = 138/228 (60%), Gaps = 5/228 (2%)

Query: 3   ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDA-VDEEDVISWI 61
           +L  DKH+ Y++            ++E  RLN  YWG  +L +L + D  VD+E  IS++
Sbjct: 25  QLLPDKHIGYLVERMAITFPSLFGLLEASRLNTIYWGDNSLWMLKRYDKTVDKERKISFV 84

Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADK---VSNYIVGLQNEDGS 118
           L C   SGGF G  G D H+  T+ A+Q LA+ D +D+L       ++++I GL+N DGS
Sbjct: 85  LGCVGPSGGFGGGPGQDSHLASTVFAIQSLAMLDSLDVLSRIDRDSLASFISGLKNPDGS 144

Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F  D+ GEVDTRF YIA+  LS+L  LDK   + AV+Y+  C+N +GGFG  P  E+H+G
Sbjct: 145 FRSDLEGEVDTRFLYIALSILSLLGDLDKELFEGAVDYLKKCQNYEGGFGLCPYAEAHAG 204

Query: 179 QIFCCVGALAIAGALHHV-DKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
             FC + ALA+ G L  + D + L  WL ERQ+ SGGLNGR  KL D 
Sbjct: 205 YTFCALAALALLGKLDKLSDVEKLIRWLAERQLSSGGLNGRSNKLVDT 252

Length = 342

>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement

 Score =  170 bits (431), Expect = 5e-52
 Identities = 74/241 (30%), Positives = 108/241 (44%), Gaps = 24/241 (9%)

Query: 6   ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDE------EDVIS 59
            +KH+KY++             +   +     W L  L +L     + +      E  I 
Sbjct: 1   IEKHLKYLLRYPYGDGH-WYQSLCGEQTWSTAWPLLALLLLLAATGIRDKADENIEKGIQ 59

Query: 60  WILKCQDESGGFAGNIGHD-PHVLYTLSAVQVLALFDKVDILDAD---KVSNYIVGLQNE 115
            +L  Q   GGF+G  G+D P +  T  A++ L L      +D     +  N+++ LQNE
Sbjct: 60  RLLSYQLSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNE 119

Query: 116 DGSFSGDIWG-------EVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGF 167
           DG F  D  G       E D R +  A+  L++L +L     ++KA++Y++SC+N DGGF
Sbjct: 120 DGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLDPDPLIEKALDYLLSCQNYDGGF 179

Query: 168 GCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPE---KLPD 224
           G  PGGESH     C   ALA+ G L   D      WL  RQ   GG     +   KL D
Sbjct: 180 G--PGGESHGYGTACAAAALALLGDLDSPDAKKALRWLLSRQRPDGGWGEGRDRTNKLSD 237

Query: 225 V 225
            
Sbjct: 238 S 238

Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein. Alpha (2)-M and PZP are known to bind to and, may modulate, the activity of placental protein-14 in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. Length = 300

>gnl|CDD|239223 cd02893, FTase, Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score =  158 bits (401), Expect = 2e-47
 Identities = 85/224 (37%), Positives = 123/224 (54%), Gaps = 8/224 (3%)

Query: 7   DKHVKYII-SVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWILKC 64
           +KH+KY+  S+ +   SF S+      L   YW L +L++LG+ LD    +DVIS++ +C
Sbjct: 2   EKHIKYLKKSLRQLPSSFTSLDASRPWL--LYWILHSLELLGEELDQSYADDVISFLRRC 59

Query: 65  QDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDA---DKVSNYIVGLQNEDGSFSG 121
           Q+ SGGF G  G  PH+  T +AV  LA+    +  D    + +  +++ L+  DGSF  
Sbjct: 60  QNPSGGFGGGPGQLPHLATTYAAVNALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRM 119

Query: 122 DIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIF 181
            + GEVD R +Y AI   S+L  L     +   EYI+SC+  +GGFG  PG E+H G  F
Sbjct: 120 HVGGEVDVRGTYCAISVASLLNILTDELFEGVAEYILSCQTYEGGFGGVPGNEAHGGYTF 179

Query: 182 CCVGALAIAGALHHVDKD-LLGWWLCERQVKSGGLNGRPEKLPD 224
           C + ALAI G    +D + LL W +  +    GG  GR  KL D
Sbjct: 180 CALAALAILGKPDKLDLESLLRWLVARQMRFEGGFQGRTNKLVD 223

FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular processes including Ras/mitogen activated protein kinase signaling pathways in mammals and, abscisic acid signal transduction in Arabidopsis. Length = 299

>gnl|CDD|239225 cd02895, GGTase-I, Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score =  147 bits (373), Expect = 4e-43
 Identities = 80/245 (32%), Positives = 120/245 (48%), Gaps = 29/245 (11%)

Query: 7   DKHVKYII-SVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEED---VISWIL 62
            KHVK+    ++    S++S+    L +  A++ L+ LD+LG LD++  E+   +I WI 
Sbjct: 2   KKHVKFFQRCLQLLPSSYQSLDTNRLTI--AFFALSGLDLLGALDSILVEEKDDIIEWIY 59

Query: 63  KCQ----DESGGFAG---------NIGHD-PHVLYTLSAVQVLA-LFDKVDILDADKVSN 107
             Q       GGF G            +D  ++  T  A+  L  L D +  +D   + N
Sbjct: 60  SLQVLSNLPRGGFRGSSTLGLPGTASKYDTGNLAMTYFALLSLLILGDDLSRVDRKAILN 119

Query: 108 YIVGLQNEDGSFSGDIW---GEVDTRFSYIAICCLSILQRLDK--INVDKAVEYIVSCKN 162
           ++  LQ  DGSF   +    GE D RF Y A+    +L    +  I+ +K ++YI S ++
Sbjct: 120 FLSKLQLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSEEDIDKEKLIDYIKSSQS 179

Query: 163 LDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVD---KDLLGWWLCERQVKSGGLNGRP 219
            DGGFG  PG ESH G  FC + +L++ G L  +     + L  WL  RQV   G NGRP
Sbjct: 180 YDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGRP 239

Query: 220 EKLPD 224
            K  D
Sbjct: 240 NKPAD 244

GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. Length = 307

>gnl|CDD|215380 PLN02710, PLN02710, farnesyltranstransferase subunit beta

 Score =  114 bits (287), Expect = 1e-29
 Identities = 76/229 (33%), Positives = 117/229 (51%), Gaps = 7/229 (3%)

Query: 1   MGELAADKHVKYIISVEKK-KDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVI 58
           M EL  +KH++Y+    ++   SF   V++  R    YW L ++ +LG+ LD   E D I
Sbjct: 41  MLELWREKHLEYLTRGLRQLGPSFS--VLDANRPWLCYWILHSIALLGESLDDELENDTI 98

Query: 59  SWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDIL---DADKVSNYIVGLQNE 115
            ++ +CQD +GG+ G  G  PH+  T +AV  L        L   + +K+  +++ +++ 
Sbjct: 99  DFLSRCQDPNGGYGGGPGQLPHLATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDP 158

Query: 116 DGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGES 175
            G F     GE+D R  Y AI   S+L  LD   V    +YI+SC+  +GG G  PG E+
Sbjct: 159 SGGFRMHDGGEMDVRACYTAISVASLLNILDDELVKGVGDYILSCQTYEGGIGGEPGAEA 218

Query: 176 HSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPD 224
           H G  FC + A+ +   +  +D   L  W+  RQ   GG  GR  KL D
Sbjct: 219 HGGYTFCGLAAMILINEVDRLDLPSLINWVVFRQGVEGGFQGRTNKLVD 267

Length = 439

>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like

 Score = 88.6 bits (220), Expect = 1e-22
 Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 4/113 (3%)

Query: 58  ISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDG 117
           + ++L  Q+  GG+   +G    V  T  A+  LA     +  D  K   +++  QN DG
Sbjct: 1   VDYLLSQQNPDGGWGAAVGGGSDVAMTALALLALAALG--ETPDVKKALAWLLSQQNPDG 58

Query: 118 SFSGD-IWGEVDTRFSYIAICCLSIL-QRLDKINVDKAVEYIVSCKNLDGGFG 168
            F  D      D   +  A+  L +L    D   V+KAV+Y++SC+N DGGFG
Sbjct: 59  GFGYDPQSNSPDLSSTAYALAALELLGGEPDDEAVEKAVDYLLSCQNPDGGFG 111

Length = 112

>gnl|CDD|239220 cd02890, PTase, Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score = 90.3 bits (225), Expect = 1e-21
 Identities = 57/186 (30%), Positives = 92/186 (49%), Gaps = 8/186 (4%)

Query: 10  VKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESG 69
            K++ S++    SF   +   +     Y  L+ L +L  L  +D+E +I +IL CQ+  G
Sbjct: 104 YKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNILTDIDKEKLIDYILSCQNYDG 163

Query: 70  GFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQ-NEDGSFSGDIWGEVD 128
           GF G  G + H  YT  AV  LAL  ++D++D +++  ++V  Q    G F+G     VD
Sbjct: 164 GFGGVPGAESHGGYTFCAVASLALLGRLDLIDKERLLRWLVERQLASGGGFNGRPNKLVD 223

Query: 129 TRFSYIAICCLSILQRLDKINVDKAVEYI-VSCKNLDGGFGCTPGGES---HSGQIFCCV 184
           T +S+     L IL RL  I+ +K  EYI    ++  GGF   PG      H+   +  +
Sbjct: 224 TCYSFWVGASLKILGRLHLIDQEKLREYILSCQQSEVGGFSDKPGKPPDLYHT---YYGL 280

Query: 185 GALAIA 190
             L++ 
Sbjct: 281 SGLSLL 286

The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltransferases, GGTase-II does not recognize its protein acceptor directly but requires Rab to complex with REP (Rab escort protein) before prenylation can occur. These enzymes are found exclusively in eukaryotes. Length = 286

>gnl|CDD|239224 cd02894, GGTase-II, Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score = 85.0 bits (211), Expect = 1e-19
 Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 21/178 (11%)

Query: 6   ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWG----------LTTLDILGKLDAVDEE 55
            +K  K+I  ++ +  SF          +G  WG          +  L +LGKLD +D +
Sbjct: 102 KEKIAKFIKGLQNEDGSF----------SGDKWGEVDTRFSYCAVLCLTLLGKLDLIDVD 151

Query: 56  DVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNE 115
             + ++L C +  GGF    G + H       V  LA+   +D++D D++  ++   Q  
Sbjct: 152 KAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCERQLP 211

Query: 116 DGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNL-DGGFGCTPG 172
            G  +G      D  +S+  +  L I+ RL  IN +K   +I++C++  DGGF   PG
Sbjct: 212 SGGLNGRPEKLPDVCYSWWVLSSLKIIGRLHWINKNKLKNFILACQDEEDGGFADRPG 269

GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltransferases, GGTas-II requires an escort protein to bring the substrate protein to the catalytic heterodimer and to escort the geryanylgeranylated product to the membrane. Length = 287

>gnl|CDD|227362 COG5029, CAL1, Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 77.1 bits (190), Expect = 1e-16
 Identities = 54/182 (29%), Positives = 86/182 (47%), Gaps = 2/182 (1%)

Query: 12  YIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGF 71
           +I  ++    SF S +   +     Y  L+ L +LG LD    E  + ++ KCQ+  GGF
Sbjct: 134 FISGLKNPDGSFRSDLEGEVDTRFLYIALSILSLLGDLDKELFEGAVDYLKKCQNYEGGF 193

Query: 72  AGNIGHDPHVLYTLSAVQVLALFDKVDIL-DADKVSNYIVGLQNEDGSFSGDIWGEVDTR 130
                 + H  YT  A+  LAL  K+D L D +K+  ++   Q   G  +G     VDT 
Sbjct: 194 GLCPYAEAHAGYTFCALAALALLGKLDKLSDVEKLIRWLAERQLSSGGLNGRSNKLVDTC 253

Query: 131 FSYIAICCLSILQRLDKINVDKAVEYIVSCKNLD-GGFGCTPGGESHSGQIFCCVGALAI 189
           +S+  +  L+IL +LD IN ++  +YI+ C+    GGF   PG E         +  L++
Sbjct: 254 YSFWVLSSLAILGKLDFINTEELTDYILDCQQETSGGFSDRPGEEPDVYHTCFGLAGLSL 313

Query: 190 AG 191
             
Sbjct: 314 IE 315

Length = 342

>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement

 Score = 69.5 bits (170), Expect = 5e-14
 Identities = 43/171 (25%), Positives = 74/171 (43%), Gaps = 14/171 (8%)

Query: 10  VKYIISVEKKKDSFESVVMEHLRLNGA-------YWGLTTLDILGKLDA-VDEEDVISWI 61
           + +++S++ +   F      + R+ G         + L  L +LGKLD     E  + ++
Sbjct: 110 LNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLDPDPLIEKALDYL 169

Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSG 121
           L CQ+  GGF    G + H   T  A   LAL   +D  DA K   +++  Q  DG +  
Sbjct: 170 LSCQNYDGGFGP--GGESHGYGTACAAAALALLGDLDSPDAKKALRWLLSRQRPDGGWGE 227

Query: 122 DIWGEVDT-RFSYIAICCLSIL---QRLDKINVDKAVEYIVSCKNLDGGFG 168
                       Y      ++L   +  D  + +K V++++S +N DGGF 
Sbjct: 228 GRDRTNKLSDSCYTEWAAYALLALGKLGDLEDAEKLVKWLLSQQNEDGGFS 278

Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein. Alpha (2)-M and PZP are known to bind to and, may modulate, the activity of placental protein-14 in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. Length = 300

>gnl|CDD|215630 PLN03201, PLN03201, RAB geranylgeranyl transferase beta-subunit; Provisional

 Score = 67.4 bits (165), Expect = 3e-13
 Identities = 40/166 (24%), Positives = 77/166 (46%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           +  L ADK   Y+  ++ +  SF       +    +Y  L  L +L +LD ++ E  + +
Sbjct: 101 LDLLDADKVASYVAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRLDKINVEKAVDY 160

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           I+ C++  GGF    G + H       V  LA+   +  +D D +  ++   Q + G  +
Sbjct: 161 IVSCKNFDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLN 220

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGG 166
           G      D  +S+  +  L I+ R+  I+ DK  ++I+ C++ + G
Sbjct: 221 GRPEKLPDVCYSWWVLSSLIIIDRVHWIDKDKLAKFILDCQDDENG 266

Length = 316

>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat

 Score = 59.5 bits (145), Expect = 3e-12
 Identities = 22/44 (50%), Positives = 32/44 (72%)

Query: 148 INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAG 191
           I+ +K V+Y++SC+N DGGFG  PGGES +   +C + ALA+ G
Sbjct: 1   IDKEKLVDYLLSCQNPDGGFGGRPGGESDTYYTYCALAALALLG 44

Length = 44

>gnl|CDD|239225 cd02895, GGTase-I, Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score = 63.5 bits (155), Expect = 8e-12
 Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 4/126 (3%)

Query: 52  VDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVS---NY 108
           +D+E +I +I   Q   GGF    G + H   T  A+  L+L  K++ L    +     +
Sbjct: 165 IDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRW 224

Query: 109 IVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN-LDGGF 167
           +V  Q     F+G      DT +S+     L +L     I+ +K   Y++S +  L GGF
Sbjct: 225 LVHRQVSGTGFNGRPNKPADTCYSFWVGASLKLLDAFQLIDFEKNRNYLLSTQQSLVGGF 284

Query: 168 GCTPGG 173
              P  
Sbjct: 285 AKNPDS 290

GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. Length = 307

>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like

 Score = 59.7 bits (145), Expect = 9e-12
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 6/111 (5%)

Query: 107 NYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGG 166
           +Y++  QN DG +   + G  D   + +A+  L+ L   +  +V KA+ +++S +N DGG
Sbjct: 2   DYLLSQQNPDGGWGAAVGGGSDVAMTALALLALAALG--ETPDVKKALAWLLSQQNPDGG 59

Query: 167 FGCTPGGESHS-GQIFCCVGALAIAGALHHVD--KDLLGWWLCERQVKSGG 214
           FG  P   S         + AL + G     +  +  +  +L   Q   GG
Sbjct: 60  FGYDPQSNSPDLSSTAYALAALELLGGEPDDEAVEKAV-DYLLSCQNPDGG 109

Length = 112

>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like

 Score = 58.1 bits (141), Expect = 4e-11
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 4/113 (3%)

Query: 10  VKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESG 69
           V Y++S +     + + V     +      L  L  LG+   V +   ++W+L  Q+  G
Sbjct: 1   VDYLLSQQNPDGGWGAAVGGGSDVAMTALALLALAALGETPDVKK--ALAWLLSQQNPDG 58

Query: 70  GFAGN-IGHDPHVLYTLSAVQVL-ALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           GF  +   + P +  T  A+  L  L  + D    +K  +Y++  QN DG F 
Sbjct: 59  GFGYDPQSNSPDLSSTAYALAALELLGGEPDDEAVEKAVDYLLSCQNPDGGFG 111

Length = 112

>gnl|CDD|205423 pfam13243, Prenyltrans_1, Prenyltransferase-like

 Score = 55.8 bits (135), Expect = 2e-10
 Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 4/106 (3%)

Query: 55  EDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDA-DKVSNYIVGLQ 113
           E  + +IL  Q+  G ++ + G D  V  T +  + LAL     +L+A  K   +++  Q
Sbjct: 2   ERAVEYILNTQNPDGSWSYSSGGDVSV--TAALARALALAGDARVLEAIKKAVEWLLDQQ 59

Query: 114 NEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVS 159
            EDG F  D      +  +YI    +  +   D   +++ VE+I+ 
Sbjct: 60  QEDGGFGYDGGEYAYSTATYIVALLIYGIAG-DDEKLERGVEWILK 104

Length = 109

>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat

 Score = 52.1 bits (126), Expect = 1e-09
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query: 101 DADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQ 143
           D +K+ +Y++  QN DG F G   GE DT ++Y A+  L++L 
Sbjct: 2   DKEKLVDYLLSCQNPDGGFGGRPGGESDTYYTYCALAALALLG 44

Length = 44

>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat

 Score = 51.8 bits (125), Expect = 2e-09
 Identities = 16/43 (37%), Positives = 24/43 (55%)

Query: 53 DEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFD 95
          D+E ++ ++L CQ+  GGF G  G +    YT  A+  LAL  
Sbjct: 2  DKEKLVDYLLSCQNPDGGFGGRPGGESDTYYTYCALAALALLG 44

Length = 44

>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement

 Score = 55.2 bits (133), Expect = 4e-09
 Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 4/112 (3%)

Query: 35  GAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGN---IGHDPHVLYTLSAVQVL 91
           G       L +LG LD+ D +  + W+L  Q   GG+              YT  A   L
Sbjct: 189 GTACAAAALALLGDLDSPDAKKALRWLLSRQRPDGGWGEGRDRTNKLSDSCYTEWAAYAL 248

Query: 92  ALFDKV-DILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSIL 142
               K+ D+ DA+K+  +++  QNEDG FS       DT+ +  A+  LS+ 
Sbjct: 249 LALGKLGDLEDAEKLVKWLLSQQNEDGGFSSKPGKSYDTQHTVFALLALSLY 300

Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein. Alpha (2)-M and PZP are known to bind to and, may modulate, the activity of placental protein-14 in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. Length = 300

>gnl|CDD|215380 PLN02710, PLN02710, farnesyltranstransferase subunit beta

 Score = 55.2 bits (133), Expect = 6e-09
 Identities = 53/204 (25%), Positives = 76/204 (37%), Gaps = 16/204 (7%)

Query: 35  GAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF 94
             Y  ++   +L  LD    + V  +IL CQ   GG  G  G + H  YT   +  + L 
Sbjct: 174 ACYTAISVASLLNILDDELVKGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILI 233

Query: 95  DKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKI---NVD 151
           ++VD LD   + N++V  Q  +G F G     VD  +S+      ++LQ+L  I    + 
Sbjct: 234 NEVDRLDLPSLINWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVFALLQQLVTIVDEQLQ 293

Query: 152 KAVEYI-----------VSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDL 200
                I            S    D          S  G  F       + G L H    L
Sbjct: 294 TGGSSIMFEELEDDACETSSSGKDDAGDTDSADYSKVGFDFIKASNQQM-GPLFH-SIAL 351

Query: 201 LGWWLCERQVKSGGLNGRPEKLPD 224
             + L   QV  GGL  +P K  D
Sbjct: 352 QQYILLCSQVLDGGLRDKPGKSRD 375

Length = 439

>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 154 VEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSG 213
           V+Y++S +N DGG+G   GG S        + ALA  G    V K L   WL  +Q   G
Sbjct: 1   VDYLLSQQNPDGGWGAAVGGGSDVAMTALALLALAALGETPDVKKAL--AWLLSQQNPDG 58

Query: 214 GLNGRPEKLPD 224
           G    P+    
Sbjct: 59  GFGYDPQSNSP 69

Length = 112

>gnl|CDD|227362 COG5029, CAL1, Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 49.0 bits (117), Expect = 7e-07
 Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 36  AYWGLTTLDILGKLDAVDEEDVISWILKCQDE-SGGFAGNIGHDPHVLYTLSAVQVLALF 94
           ++W L++L ILGKLD ++ E++  +IL CQ E SGGF+   G +P V +T   +  L+L 
Sbjct: 255 SFWVLSSLAILGKLDFINTEELTDYILDCQQETSGGFSDRPGEEPDVYHTCFGLAGLSLI 314

Query: 95  DKVDILDAD 103
           +   +   D
Sbjct: 315 EYKYLNPVD 323

Length = 342

>gnl|CDD|205423 pfam13243, Prenyltrans_1, Prenyltransferase-like

 Score = 43.1 bits (102), Expect = 9e-06
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 9/70 (12%)

Query: 107 NYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVD----KAVEYIVSCKN 162
            YI+  QN DGS+S    G+V      +       L       V     KAVE+++  + 
Sbjct: 6   EYILNTQNPDGSWSYSSGGDV-----SVTAALARALALAGDARVLEAIKKAVEWLLDQQQ 60

Query: 163 LDGGFGCTPG 172
            DGGFG   G
Sbjct: 61  EDGGFGYDGG 70

Length = 109

>gnl|CDD|239224 cd02894, GGTase-II, Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 37  YWGLTTLDILGKLDAVDEEDVISWILKCQD-ESGGFAGNIGHDPHVLYTLSAVQVLALF 94
           +W L++L I+G+L  +++  + ++IL CQD E GGFA   G+   V +T   +  L+L 
Sbjct: 229 WWVLSSLKIIGRLHWINKNKLKNFILACQDEEDGGFADRPGNMVDVFHTFFGLAGLSLL 287

GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltransferases, GGTas-II requires an escort protein to bring the substrate protein to the catalytic heterodimer and to escort the geryanylgeranylated product to the membrane. Length = 287

>gnl|CDD|239225 cd02895, GGTase-I, Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 4/110 (3%)

Query: 37  YWGLTTLDILGKLDAVDEEDV---ISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLAL 93
           +  + +L +LGKL+ + E+ +     W++  Q    GF G         Y+      L L
Sbjct: 198 FCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGRPNKPADTCYSFWVGASLKL 257

Query: 94  FDKVDILDADKVSNYIVGLQNED-GSFSGDIWGEVDTRFSYIAICCLSIL 142
            D   ++D +K  NY++  Q    G F+ +     D   SY+ +  LS++
Sbjct: 258 LDAFQLIDFEKNRNYLLSTQQSLVGGFAKNPDSHPDPLHSYLGLAALSLI 307

GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. Length = 307

>gnl|CDD|233578 TIGR01787, squalene_cyclas, squalene/oxidosqualene cyclases

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 39/143 (27%), Positives = 57/143 (39%), Gaps = 35/143 (24%)

Query: 56  DVISWILKCQDESGGFA--------------------GNIGHDP-HVLYTLSAVQVLALF 94
           D ++WIL  Q  +GGFA                    G+I  DP +V  T   +Q L  F
Sbjct: 392 DAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAF 451

Query: 95  DKVDILDADKVSN----YIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKI-- 148
                 +   V      Y+   Q  DGS+ G  WG     ++Y     LS L    +   
Sbjct: 452 -GHRADEIRNVLERALEYLRREQRADGSWFGR-WG---VNYTYGTGFVLSALAAAGRTYR 506

Query: 149 ---NVDKAVEYIVSCKNLDGGFG 168
               V KA ++++S +  DGG+G
Sbjct: 507 NCPEVQKACDWLLSRQMPDGGWG 529

This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene , lanosterol , cycloartenol, amyrin, lupeol and isomultiflorenol. Length = 621

>gnl|CDD|239222 cd02892, SQCY_1, Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 45/171 (26%), Positives = 71/171 (41%), Gaps = 46/171 (26%)

Query: 39  GLTTLDILGKLDAVDEE-------DVISWILKCQDESGGFA------------------- 72
            L  L  L +L    E+       D + W+L  Q+ +GGFA                   
Sbjct: 380 ALKALLRLQELPPFGEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFED 439

Query: 73  -GNIGHDP-HVLYTLSAVQVLALFDKVDILDADKVSN-------YIVGLQNEDGSFSGDI 123
            G+I  DP +V  T S ++ L LF K+      ++         Y++  Q  DGS+ G  
Sbjct: 440 FGDIMIDPPYVECTGSVLEALGLFGKLYPGHRREIDPAIRRAVKYLLREQEPDGSWYGR- 498

Query: 124 WGEVDTRFSY---IAICCLSILQRLDKIN---VDKAVEYIVSCKNLDGGFG 168
           WG     + Y    A+  L+     D  N   + KA ++++S +N DGG+G
Sbjct: 499 WG---VCYIYGTWFALEALAA-AGEDYENSPYIRKACDFLLSKQNPDGGWG 545

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. Length = 634

>gnl|CDD|239219 cd02889, SQCY, Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 44/167 (26%), Positives = 69/167 (41%), Gaps = 41/167 (24%)

Query: 39  GLTTLDILGKLDAVDEE-------DVISWILKCQDESGGFA------------------G 73
            L  L  L K     ++       D + W+L  Q+ +GGFA                  G
Sbjct: 97  ALKALLRLQKKPPDGKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDG 156

Query: 74  NIGHD-PHVLYTLSAVQVLALFDKVDILDADKVSN-------YIVGLQNEDGSFSGDIWG 125
           +I  D P+V  T S ++ L LF K+      ++         Y+   Q  DGS+ G  WG
Sbjct: 157 DIMIDPPYVECTGSVLEALGLFGKLYPEHRREIDPAIRRAVKYLEREQEPDGSWYGR-WG 215

Query: 126 EVDTRFSY---IAICCLSIL-QRLDKINVDKAVEYIVSCKNLDGGFG 168
                F Y    A+  L+   +  +   V KA ++++S +N DGG+G
Sbjct: 216 ---VCFIYGTWFALEALAAAGEDENSPYVRKACDWLLSKQNPDGGWG 259

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain. Length = 348

>gnl|CDD|224603 COG1689, COG1689, Uncharacterized protein conserved in archaea [Function unknown]

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 10/134 (7%)

Query: 13  IISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFA 72
           +I   ++    ++  + H      Y  L TL   G  +     +V  + L C D  GGF 
Sbjct: 148 VIEFVREFGIGDAYGVTHPNTTMTYQALYTLGSKGPKE-----EVRHFELCCGDW-GGFT 201

Query: 73  GN-IGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDT-R 130
                + P++  T  A++ L L      +       +I  LQN++G F       + T  
Sbjct: 202 EVPNSYPPYIEPTFYALRGLELLGGKYCISD--HIRFIRSLQNQNGGFRRSYELGISTFE 259

Query: 131 FSYIAICCLSILQR 144
            +Y A+  L+ L R
Sbjct: 260 NTYRALASLASLHR 273

Length = 274

>gnl|CDD|215630 PLN03201, PLN03201, RAB geranylgeranyl transferase beta-subunit; Provisional

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 1/101 (0%)

Query: 43  LDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDA 102
           L I G L  VD++ +  W+ + Q +SGG  G     P V Y+   +  L + D+V  +D 
Sbjct: 191 LAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIIIDRVHWIDK 250

Query: 103 DKVSNYIVGLQN-EDGSFSGDIWGEVDTRFSYIAICCLSIL 142
           DK++ +I+  Q+ E+G  S      VD   ++  +  LS+L
Sbjct: 251 DKLAKFILDCQDDENGGISDRPDDAVDVFHTFFGVAGLSLL 291

Length = 316

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	239
PLN03201	316	RAB geranylgeranyl transferase beta-subunit; Provi	100.0
KOG0366	329	consensus Protein geranylgeranyltransferase type I	100.0
PLN02710	439	farnesyltranstransferase subunit beta	100.0
cd02893	299	FTase Protein farnesyltransferase (FTase)_like pro	100.0
cd02894	287	GGTase-II Geranylgeranyltransferase type II (GGTas	100.0
cd02895	307	GGTase-I Geranylgeranyltransferase types I (GGTase	100.0
cd02895	307	GGTase-I Geranylgeranyltransferase types I (GGTase	100.0
COG5029	342	CAL1 Prenyltransferase, beta subunit [Posttranslat	100.0
cd02894	287	GGTase-II Geranylgeranyltransferase type II (GGTas	100.0
cd02890	286	PTase Protein prenyltransferase (PTase) domain, be	100.0
PLN03201	316	RAB geranylgeranyl transferase beta-subunit; Provi	100.0
KOG0365	423	consensus Beta subunit of farnesyltransferase [Pos	100.0
cd02890	286	PTase Protein prenyltransferase (PTase) domain, be	100.0
KOG0367	347	consensus Protein geranylgeranyltransferase Type I	100.0
PLN02710	439	farnesyltranstransferase subunit beta	100.0
cd02893	299	FTase Protein farnesyltransferase (FTase)_like pro	100.0
KOG0366	329	consensus Protein geranylgeranyltransferase type I	100.0
COG5029	342	CAL1 Prenyltransferase, beta subunit [Posttranslat	100.0
KOG0367	347	consensus Protein geranylgeranyltransferase Type I	100.0
KOG0365	423	consensus Beta subunit of farnesyltransferase [Pos	100.0
cd00688	300	ISOPREN_C2_like This group contains class II terpe	99.98
cd00688	300	ISOPREN_C2_like This group contains class II terpe	99.97
TIGR03463	634	osq_cycl 2,3-oxidosqualene cyclase. This model ide	99.95
TIGR01507	635	hopene_cyclase squalene-hopene cyclase. SHC is an	99.94
cd02892	634	SQCY_1 Squalene cyclase (SQCY) domain subgroup 1;	99.92
PLN03012	759	Camelliol C synthase	99.92
cd02889	348	SQCY Squalene cyclase (SQCY) domain; found in clas	99.92
PLN02993	763	lupeol synthase	99.92
cd02889	348	SQCY Squalene cyclase (SQCY) domain; found in clas	99.91
TIGR01787	621	squalene_cyclas squalene/oxidosqualene cyclases. T	99.91
PF13249	113	Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B	99.87
TIGR03463	634	osq_cycl 2,3-oxidosqualene cyclase. This model ide	99.86
cd02892	634	SQCY_1 Squalene cyclase (SQCY) domain subgroup 1;	99.84
PF13249	113	Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B	99.84
TIGR01507	635	hopene_cyclase squalene-hopene cyclase. SHC is an	99.84
COG1689	274	Uncharacterized protein conserved in archaea [Func	99.83
TIGR01787	621	squalene_cyclas squalene/oxidosqualene cyclases. T	99.81
cd02896	297	complement_C3_C4_C5 Proteins similar to C3, C4 and	99.8
PLN03012	759	Camelliol C synthase	99.78
cd02897	292	A2M_2 Proteins similar to alpha2-macroglobulin (al	99.77
PLN02993	763	lupeol synthase	99.75
COG1689	274	Uncharacterized protein conserved in archaea [Func	99.62
KOG0497	760	consensus Oxidosqualene-lanosterol cyclase and rel	99.61
cd02896	297	complement_C3_C4_C5 Proteins similar to C3, C4 and	99.52
cd02897	292	A2M_2 Proteins similar to alpha2-macroglobulin (al	99.46
PF13243	109	Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A	99.45
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF00432	44	Prenyltrans: Prenyltransferase and squalene oxidas	99.45
cd02891	282	A2M_like Proteins similar to alpha2-macroglobulin	99.43
PF13243	109	Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A	99.32
PF07678	246	A2M_comp: A-macroglobulin complement component; In	99.29
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF00432	44	Prenyltrans: Prenyltransferase and squalene oxidas	99.26
COG1657	517	SqhC Squalene cyclase [Lipid metabolism]	99.23
cd02891	282	A2M_like Proteins similar to alpha2-macroglobulin	99.21
KOG0497	760	consensus Oxidosqualene-lanosterol cyclase and rel	99.16
PF07678	246	A2M_comp: A-macroglobulin complement component; In	98.72
COG1657	517	SqhC Squalene cyclase [Lipid metabolism]	98.39
TIGR02474	290	pec_lyase pectate lyase, PelA/Pel-15E family. Memb	98.01
TIGR02474	290	pec_lyase pectate lyase, PelA/Pel-15E family. Memb	97.86
PLN02279	784	ent-kaur-16-ene synthase	97.25
KOG1366	1436	consensus Alpha-macroglobulin [Posttranslational m	97.18
PLN02592	800	ent-copalyl diphosphate synthase	96.51
KOG1366	1436	consensus Alpha-macroglobulin [Posttranslational m	96.06
PF09492	289	Pec_lyase: Pectic acid lyase; InterPro: IPR012669	95.88
PLN02279	784	ent-kaur-16-ene synthase	95.61
PLN02592	800	ent-copalyl diphosphate synthase	95.51
PF09492	289	Pec_lyase: Pectic acid lyase; InterPro: IPR012669	94.15
PF05817	636	Ribophorin_II: Oligosaccharyltransferase subunit R	92.98
PF01122	326	Cobalamin_bind: Eukaryotic cobalamin-binding prote	90.78
PF01122	326	Cobalamin_bind: Eukaryotic cobalamin-binding prote	89.49

>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional

Probab=100.00  E-value=1e-59  Score=404.72  Aligned_cols=236  Identities=79%  Similarity=1.390  Sum_probs=223.8

Q ss_pred             CCcccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhccCCCCCCCCCCCCCCc
Q 026402            1 MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPH   80 (239)
Q Consensus         1 ~~~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~   80 (239)
                      |-++.++||++||+++++.+++|.....++++++.+||++.+|++|+..+.++++++++||++||++||||+..++.++|
T Consensus         5 ~~~l~~~kh~~yl~~~~~~~~~~~~~~~~~~r~~~~y~~l~~L~lL~~~~~~~~~~~i~~l~~cq~~~GGF~~~~~~~~h   84 (316)
T PLN03201          5 MGELVVDKHVRYIKSLEKKKDSFESVVMEHLRMNGAYWGLTALDLLGKLDDVDRDEVVSWVMRCQHESGGFGGNTGHDPH   84 (316)
T ss_pred             hhhccHHHHHHHHHHhCCCCCCccccccccchHHHHHHHHHHHHHhCCCccccHHHHHHHHHHhcCCCCCcCCCCCCccc
Confidence            34789999999999999988999877667889999999999999999876778999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhc
Q 026402           81 VLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC  160 (239)
Q Consensus        81 ~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~  160 (239)
                      +.+||+|+++|.++++++.+|++++++||.++|++||||.++++++.|+++||||++++.+++.++.++++++++||++|
T Consensus        85 ~~~Ty~al~~L~ll~~~~~id~~~~~~~l~s~Q~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~~~i~~~~~~~~i~sc  164 (316)
T PLN03201         85 ILYTLSAVQILALFDRLDLLDADKVASYVAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRLDKINVEKAVDYIVSC  164 (316)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhcCCCCCccCCCCCCccHHHHHHHHHHHHHhCccchhHHHHHHHHHHHh
Confidence            99999999999999888889999999999999999999999999999999999999999999987778899999999999


Q ss_pred             cCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccCCccCCCCCCCCChhhhhhhhccCC
Q 026402          161 KNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGLLLLVGSFKL  236 (239)
Q Consensus       161 Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~~k~~D~c~s~~~~~~l~  236 (239)
                      |++||||+.+|+.|+|+++||||+++|.+++..+..+.+++++||++||..+|||++||||.+|+|||||++++|.
T Consensus       165 q~~dGGF~~~p~~esh~g~T~caiaaL~llg~~~~~d~~~l~~wL~~rQ~~~GGf~grp~k~~D~cys~w~~a~L~  240 (316)
T PLN03201        165 KNFDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLI  240 (316)
T ss_pred             cCCCCCcCCCCCCCCccceehHHHHHHHHcCccccCCHHHHHHHHHHhCCCCCCcCCCCCCCCchHHHHHHHHHHH
Confidence            9999999999999999999999999999999888889999999999999999999999999999999999999874

>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-59  Score=377.72  Aligned_cols=234  Identities=67%  Similarity=1.207  Sum_probs=227.8

Q ss_pred             cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhccCCCCCCCCCCCCCCchh
Q 026402            3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVL   82 (239)
Q Consensus         3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~   82 (239)
                      ++..+||++||++..+++.+|.++..++-++++.||.+.+|.++++....++++++.|+++||+++|||+.+++++||+.
T Consensus        17 ~Ll~dkH~~yI~~~~~kk~~fey~l~EhlRmsgiYWg~tal~ll~~le~~~~eeiv~~v~~C~~~~GGfa~~~Ghd~hll   96 (329)
T KOG0366|consen   17 ELLKDKHARYIESYGKKKDSFEYCLTEHLRMSGIYWGLTALDLLGQLERMSREEIVSFVLSCQHEDGGFAGCPGHDPHLL   96 (329)
T ss_pred             HHHHHHHHHHHHHhccccchHHHHHHhHhhhcchhhhhhHHHHhcccchhhHHHHHHHHHheecCCCCcCCCCCCChHHH
Confidence            57789999999999999999999999999999999999999999998777899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhccC
Q 026402           83 YTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN  162 (239)
Q Consensus        83 ~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~Q~  162 (239)
                      +|++|+++|.+.+.+..+|++++.+||..+|++||+|.+.-++|.|+|++|||+++|++|+.++.++++++++|+++|-|
T Consensus        97 ~TlsAvQiL~~ydsi~~~d~d~v~~yi~gLq~edGsF~gD~wGEvDTRfs~~av~~L~lLg~ld~~nve~aVd~~~~CyN  176 (329)
T KOG0366|consen   97 YTLSAVQILALYDSINVLDRDKVASYIKGLQQEDGSFSGDIWGEVDTRFSYCAVACLALLGKLDTINVEKAVDFVLSCYN  176 (329)
T ss_pred             HHHHHHHHHHHHcccccccHHHHHHHHHhhcCcCCcccCCcccccchhhhHHHHHHHHHHhhHHHhhHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccCCccCCCCCCCCChhhhhhhhccCC
Q 026402          163 LDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGLLLLVGSFKL  236 (239)
Q Consensus       163 ~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~~k~~D~c~s~~~~~~l~  236 (239)
                      -||||+.+|+.|||+...||++++|+++++++.+|.+.+..||+.||.+.||.+|||.|.||+|||||+++||.
T Consensus       177 ~DGGFG~~pGaESHagqifcCvgaLai~~~L~~vd~d~lgwwlceRQ~~sGGLNGRpeKlpDVCYSwWvlsSL~  250 (329)
T KOG0366|consen  177 FDGGFGCRPGAESHAGQIFCCVGALAITGKLHLVDRDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLSSLA  250 (329)
T ss_pred             cCCCcCCCCCcccccceehhhHHHHHHccchhhcCHHHHHHHHHhccCCCCCCCCCcccCcchhhHHHHHhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999984

>PLN02710 farnesyltranstransferase subunit beta

Probab=100.00  E-value=1.3e-58  Score=406.92  Aligned_cols=233  Identities=31%  Similarity=0.529  Sum_probs=217.8

Q ss_pred             CcccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHhccCCCCCCCCCCCCCCc
Q 026402            2 GELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQDESGGFAGNIGHDPH   80 (239)
Q Consensus         2 ~~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~-~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~   80 (239)
                      .+|++++|++|+++..++ -+..+...+.+++|.+||+|.+|.+|+.. +..+++++++||.+||++||||+..++.++|
T Consensus        42 ~~l~~~~H~~yl~~~l~~-lp~~~~~lDa~r~~~~Yw~L~sL~lLg~~l~~~~~~~ii~~l~~cQ~~dGGFgg~pg~~~h  120 (439)
T PLN02710         42 LELWREKHLEYLTRGLRQ-LGPSFSVLDANRPWLCYWILHSIALLGESLDDELENDTIDFLSRCQDPNGGYGGGPGQLPH  120 (439)
T ss_pred             ccccHHHHHHHHHHHhhc-CChhhhhhhhhhHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhcCCCcCCCCCCCCCcc
Confidence            479999999999998774 33445556789999999999999999973 4457899999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhcCC---CCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHH
Q 026402           81 VLYTLSAVQVLALFDK---VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYI  157 (239)
Q Consensus        81 ~~~T~~al~~L~~l~~---~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l  157 (239)
                      +..||+|+.+|.++++   ++.+|++++++||.++|++||||.+.+++|+|+++||||++++.+++.++..+.+++++||
T Consensus       121 l~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s~q~~dGgF~~~~~gE~D~R~tYcAlail~LL~~l~~~~~e~~~~~I  200 (439)
T PLN02710        121 LATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDPSGGFRMHDGGEMDVRACYTAISVASLLNILDDELVKGVGDYI  200 (439)
T ss_pred             HHHHHHHHHHHHHcCCchhhcccCHHHHHHHHHHcCCCCCCcccCCCCCCCcCCcHHHHHHHHHhCcCchhhHHHHHHHH
Confidence            9999999999999985   5678999999999999999999999999999999999999999999998888999999999


Q ss_pred             HhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccCCccCCCCCCCCChhhhhhhhccC
Q 026402          158 VSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGLLLLVGSFK  235 (239)
Q Consensus       158 ~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~~k~~D~c~s~~~~~~l  235 (239)
                      ++||++||||+..|+.|+|+++||||+++|.+|++.+.+|.+++++||+.||+.+|||+|||||.+|+|||||++++|
T Consensus       201 ~scQ~~dGGF~g~P~~EaH~gyTfcavAsL~LLg~l~~id~~~l~~WL~~rQ~~~GGF~GR~nKl~D~CYSfW~~a~L  278 (439)
T PLN02710        201 LSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVDRLDLPSLINWVVFRQGVEGGFQGRTNKLVDGCYSFWQGGVF  278 (439)
T ss_pred             HHhCCCCCCCCCCCCCCCchHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcCcCCCcCCCCCCCCCchhhHHHHHHH
Confidence            999999999999999999999999999999999998889999999999999999999999999999999999999986

>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=8.5e-56  Score=378.23  Aligned_cols=229  Identities=39%  Similarity=0.679  Sum_probs=212.3

Q ss_pred             HHHHHHHHHHccc-CCCCccccccccchHHHHHHHHHHHHhhCC-CCCcCHHHHHHHHHhccCCCCCCCCCCCCCCchhH
Q 026402            6 ADKHVKYIISVEK-KKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLY   83 (239)
Q Consensus         6 ~~~~~~yl~~~q~-~dg~~~~~~~~~~~~~~~y~al~~l~ll~~-~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~   83 (239)
                      +++|++|++++.. .+++|...  +.++++.+||++.+|.+|+. ...+.++++++||++||++||||+..++.++|+.+
T Consensus         1 ~~~h~~~~~~~l~~~p~~~~~~--d~~~~~~~y~~l~~l~lL~~~~~~~~~~~~i~~i~~~q~~~GgF~~~~~~~~h~~~   78 (299)
T cd02893           1 REKHIKYLKKSLRQLPSSFTSL--DASRPWLLYWILHSLELLGEELDQSYADDVISFLRRCQNPSGGFGGGPGQLPHLAT   78 (299)
T ss_pred             ChHHHHHHHHHhhcCCcccccc--ccccHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhcCCCCCCCCCCCCCccHHH
Confidence            5899999999988 44556533  57899999999999999997 33457899999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCC---CCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhc
Q 026402           84 TLSAVQVLALFDK---VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC  160 (239)
Q Consensus        84 T~~al~~L~~l~~---~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~  160 (239)
                      ||+|+.+|.+++.   .+.++++++++||.++|++||||...+.+++|+++|||+++++.+++.+++.+++++++||++|
T Consensus        79 Ty~A~~~L~ll~~~~~~~~id~~~~~~~l~~~q~~dGgf~~~~~~e~D~r~tycava~~~lL~~~~~~~~~~~~~~l~~c  158 (299)
T cd02893          79 TYAAVNALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVASLLNILTDELFEGVAEYILSC  158 (299)
T ss_pred             HHHHHHHHHHhCCchhhhHhhHHHHHHHHHHhcCCCCCeeCCCCCCchHhHHHHHHHHHHHhCCCchhhHHHHHHHHHHc
Confidence            9999999999986   4567899999999999999999999999999999999999999999988888899999999999


Q ss_pred             cCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhcccc-CCccCCCCCCCCChhhhhhhhccCC
Q 026402          161 KNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDVGLLLLVGSFKL  236 (239)
Q Consensus       161 Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~-~GGf~~~~~k~~D~c~s~~~~~~l~  236 (239)
                      |++||||+.+|+.|+|+++||||+++|.+++..+.++.+++++||++||.+ +|||++||+|.+|+|||||++++|.
T Consensus       159 Q~~dGGF~~~p~~e~h~~yTfcavasL~llg~~~~~d~~~l~~wl~~~q~~~~GGf~grp~k~~D~cys~w~~a~l~  235 (299)
T cd02893         159 QTYEGGFGGVPGNEAHGGYTFCALAALAILGKPDKLDLESLLRWLVARQMRFEGGFQGRTNKLVDGCYSFWVGGSLP  235 (299)
T ss_pred             CCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCccccCHHHHHHHHHhhcCCCCCCcCCCCCCCCccHHHHHHHHHHH
Confidence            999999999999999999999999999999998889999999999999987 9999999999999999999999863

FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro

>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=1.8e-55  Score=375.19  Aligned_cols=232  Identities=62%  Similarity=1.163  Sum_probs=218.8

Q ss_pred             ccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhcc-CCCCCCCCCCCCCCchh
Q 026402            4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQ-DESGGFAGNIGHDPHVL   82 (239)
Q Consensus         4 ~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~q-~~dGgf~~~~~~~~~~~   82 (239)
                      |+++||++|++++.+....+.....+.++++.+||++++|.+|+..+.++++++++||++|| +++|||...++.++|+.
T Consensus         1 ~~~~~h~~y~~~~~~~~~~~~~~~~~~~r~~~~y~~l~~l~lL~~~~~~~~~~~i~fl~~~q~~~~GgF~~~~~~~~~~~   80 (287)
T cd02894           1 LLLEKHIEYILSLTKKKDDYEYILTEHLRMSGIYWGLTALDLLGQLERLNREEIIEFVKSCQDNEDGGFGGSPGHDPHIL   80 (287)
T ss_pred             CCHHHHHHHHHHhccccCChhhhhHHhhHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHhcCCCCCCCCCCCCcchHH
Confidence            58999999999999965556677778999999999999999999876678999999999999 78999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCC--HHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhc
Q 026402           83 YTLSAVQVLALFDKVDILD--ADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC  160 (239)
Q Consensus        83 ~T~~al~~L~~l~~~~~~~--~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~  160 (239)
                      +||+|+.+|.+++.++.++  ++++++||.++|++||||.+.+.+++|+++||+|++++.+++..+.++++++++||++|
T Consensus        81 ~t~~a~~~L~ll~~~~~i~~~~~~~~~~i~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~~~i~~~~~~~~l~~~  160 (287)
T cd02894          81 STLSAIQILALYDLLNKIDENKEKIAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLGKLDLIDVDKAVDYLLSC  160 (287)
T ss_pred             HHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHcCCCCCeecCCCCCchHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHc
Confidence            9999999999987767777  89999999999999999999999999999999999999999987788999999999999


Q ss_pred             cCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccCCccCCCCCCCCChhhhhhhhccC
Q 026402          161 KNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGLLLLVGSFK  235 (239)
Q Consensus       161 Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~~k~~D~c~s~~~~~~l  235 (239)
                      |++||||+.+|+.++|+++||||+++|.+++..+.++.+++++||++||.++|||++||+|.+|+|||||++++|
T Consensus       161 q~~dGGF~~~~~~es~~~~t~cavasL~llg~~~~~~~~~~~~~L~~~q~~~GGf~gr~~k~~D~~ysf~~~a~l  235 (287)
T cd02894         161 YNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLSSL  235 (287)
T ss_pred             CCCCCCcCCCCCCCCchhHHHHHHHHHHHcCcccccCHHHHHHHHHHhCCCCCCcCCCCCCCCchhHhhHHHHHH
Confidence            999999999999999999999999999999998888999999999999999999999999999999999999987

GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr

>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=5.7e-53  Score=361.84  Aligned_cols=229  Identities=34%  Similarity=0.594  Sum_probs=207.7

Q ss_pred             HHHHHHHHHHcccCC-CCccccccccchHHHHHHHHHHHHhhCCCC---CcCHHHHHHHHHhcc----CCCCCCCCCCC-
Q 026402            6 ADKHVKYIISVEKKK-DSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILKCQ----DESGGFAGNIG-   76 (239)
Q Consensus         6 ~~~~~~yl~~~q~~d-g~~~~~~~~~~~~~~~y~al~~l~ll~~~~---~~~~~~~i~~l~~~q----~~dGgf~~~~~-   76 (239)
                      ++||++|++++.++- .+|.  ..+.++++.+||+|.+|.+|+...   .++++++++||.+||    ++||||+..++ 
T Consensus         1 ~~~H~~y~~~~l~~lp~~~~--~~d~~r~~~~yf~l~~L~lL~~~~~~~~~~r~~~i~~i~~~q~~~~~~~GgF~~~~~~   78 (307)
T cd02895           1 KKKHVKFFQRCLQLLPSSYQ--SLDTNRLTIAFFALSGLDLLGALDSILVEEKDDIIEWIYSLQVLSNLPRGGFRGSSTL   78 (307)
T ss_pred             ChHHHHHHHHHhhhCCchhh--hhhhhhHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhcccCCCCCCCCCCCCC
Confidence            479999999988732 3343  346899999999999999999764   468899999999999    99999999876 


Q ss_pred             ---------CCCchhHHHHHHHHHHhcCC-CCCCCHHHHHHHHHhccCCCCCcccCC---CCCCCcchhHHHHhHHHhhc
Q 026402           77 ---------HDPHVLYTLSAVQVLALFDK-VDILDADKVSNYIVGLQNEDGSFSGDI---WGEVDTRFSYIAICCLSILQ  143 (239)
Q Consensus        77 ---------~~~~~~~T~~al~~L~~l~~-~~~~~~~~~~~~l~~~Q~~dGgf~~~~---~~~~d~~~ty~al~~l~~l~  143 (239)
                               +++|+..||+|+.+|.+++. .+.+|++++++||.++|++||||++.+   .+++|+++||||++++.+++
T Consensus        79 ~~~~~~~~~~~~~l~~ty~Al~~L~lL~~~~~~idr~~i~~~l~~~q~~dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~  158 (307)
T cd02895          79 GLPGTASKYDTGNLAMTYFALLSLLILGDDLSRVDRKAILNFLSKLQLPDGSFGSVLDSEGGENDMRFCYCAVAICYMLD  158 (307)
T ss_pred             ccccccccCCcccHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHhCCCCCCccCCcCCcCCCccHHHHHHHHHHHHHhC
Confidence                     47999999999999999975 456789999999999999999999987   78999999999999999999


Q ss_pred             cCC--hhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCC---CCCHHHHHHHHHhccccCCccCCC
Q 026402          144 RLD--KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALH---HVDKDLLGWWLCERQVKSGGLNGR  218 (239)
Q Consensus       144 ~~~--~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~---~~~~~~~~~~L~~~Q~~~GGf~~~  218 (239)
                      ..+  .++.+++++||++||++||||+..|+.|+|+++||||+++|.+++..+   .++.+++++||++||+.+|||++|
T Consensus       159 ~~~~~~~d~~~li~~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~lL~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr  238 (307)
T cd02895         159 DWSEEDIDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGR  238 (307)
T ss_pred             CCccccccHHHHHHHHHHccCCCCCccCCCCCCccccHHHHHHHHHHHcCCccccccccHHHHHHHHHHhcCCCCCcCCC
Confidence            876  578999999999999999999999999999999999999999999875   688999999999999999999999


Q ss_pred             CCCCCChhhhhhhhccCC
Q 026402          219 PEKLPDVGLLLLVGSFKL  236 (239)
Q Consensus       219 ~~k~~D~c~s~~~~~~l~  236 (239)
                      |+|.+|+|||||++++|.
T Consensus       239 ~~k~~D~cysfw~~a~L~  256 (307)
T cd02895         239 PNKPADTCYSFWVGASLK  256 (307)
T ss_pred             CCCCCccchhhHHHHHHH
Confidence            999999999999999873

GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r

>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=9.2e-52  Score=354.38  Aligned_cols=233  Identities=22%  Similarity=0.318  Sum_probs=216.9

Q ss_pred             cccHHHHHHHHHHcc----cCCCCcccccc----------ccchHHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHhccCC
Q 026402            3 ELAADKHVKYIISVE----KKKDSFESVVM----------EHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQDE   67 (239)
Q Consensus         3 ~~~~~~~~~yl~~~q----~~dg~~~~~~~----------~~~~~~~~y~al~~l~ll~~~-~~~~~~~~i~~l~~~q~~   67 (239)
                      .+++++.++||.++|    +++|||.....          ++++++.||||+.+|.+|+.. ..++++++++||++||++
T Consensus        48 ~~~r~~~i~~i~~~q~~~~~~~GgF~~~~~~~~~~~~~~~~~~~l~~ty~Al~~L~lL~~~~~~idr~~i~~~l~~~q~~  127 (307)
T cd02895          48 VEEKDDIIEWIYSLQVLSNLPRGGFRGSSTLGLPGTASKYDTGNLAMTYFALLSLLILGDDLSRVDRKAILNFLSKLQLP  127 (307)
T ss_pred             HHHHHHHHHHHHHHhcccCCCCCCCCCCCCCccccccccCCcccHHHHHHHHHHHHHhCCchhhhhHHHHHHHHHHhCCC
Confidence            578899999999999    99999986543          478999999999999999864 346899999999999999


Q ss_pred             CCCCCCCC---CCCCchhHHHHHHHHHHhcCCCC--CCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhh
Q 026402           68 SGGFAGNI---GHDPHVLYTLSAVQVLALFDKVD--ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSIL  142 (239)
Q Consensus        68 dGgf~~~~---~~~~~~~~T~~al~~L~~l~~~~--~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l  142 (239)
                      ||||+..+   +.++|+..||+|+.++.+++..+  .++++++++||.+||++||||+..|+.|+|.++|||++++|.++
T Consensus       128 dGgF~~~~~~~~~e~d~r~ty~Av~~l~lL~~~~~~~~d~~~li~~l~s~Q~~dGGF~~~~~~Esh~g~Tyca~asL~lL  207 (307)
T cd02895         128 DGSFGSVLDSEGGENDMRFCYCAVAICYMLDDWSEEDIDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTFCAIASLSLL  207 (307)
T ss_pred             CCCccCCcCCcCCCccHHHHHHHHHHHHHhCCCccccccHHHHHHHHHHccCCCCCccCCCCCCccccHHHHHHHHHHHc
Confidence            99999987   78999999999999999999765  57899999999999999999999999999999999999999999


Q ss_pred             ccCC---hhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccc-cCCccCCC
Q 026402          143 QRLD---KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQV-KSGGLNGR  218 (239)
Q Consensus       143 ~~~~---~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~-~~GGf~~~  218 (239)
                      +.+.   .++.+++++||++||+++|||+.+|++++|++||||++++|.+++..+.+|.+++.+||++||+ .+|||+++
T Consensus       208 ~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr~~k~~D~cysfw~~a~L~iL~~~~~id~~~l~~~l~~~q~~~~GGf~~~  287 (307)
T cd02895         208 GKLEELSEKFLERLKRWLVHRQVSGTGFNGRPNKPADTCYSFWVGASLKLLDAFQLIDFEKNRNYLLSTQQSLVGGFAKN  287 (307)
T ss_pred             CCccccccccHHHHHHHHHHhcCCCCCcCCCCCCCCccchhhHHHHHHHHcCcccccCHHHHHHHHHHHcCCCCCCcCCC
Confidence            9875   6889999999999999999999999999999999999999999998888999999999999985 58999999


Q ss_pred             CCCCCChhhhhhhhccC
Q 026402          219 PEKLPDVGLLLLVGSFK  235 (239)
Q Consensus       219 ~~k~~D~c~s~~~~~~l  235 (239)
                      |+|.||.|||||++++|
T Consensus       288 p~~~~D~~ht~~~la~L  304 (307)
T cd02895         288 PDSHPDPLHSYLGLAAL  304 (307)
T ss_pred             CCCCCChhHHHHHHHHH
Confidence            99999999999999987

GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r

>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-52  Score=346.07  Aligned_cols=234  Identities=43%  Similarity=0.706  Sum_probs=218.8

Q ss_pred             cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCC-CcCHHHHHHHHHhccCCCCCCCCCCCCCCch
Q 026402            3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD-AVDEEDVISWILKCQDESGGFAGNIGHDPHV   81 (239)
Q Consensus         3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~-~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~   81 (239)
                      .+.+++|+.|+.+.-...-.+.++..++.+++..||...++.++++.. .+.+++.+.++++|+.+.|||+..+++++|+
T Consensus        25 ~L~~~~H~~yl~~~~~~~~~~~~~l~~~~~~~~iyw~~~sl~~l~~~~~~~~~er~i~~v~~~~~~~G~f~~~~g~~~hL  104 (342)
T COG5029          25 QLLPDKHIGYLVERMAITFPSLFGLLEASRLNTIYWGDNSLWMLKRYDKTVDKERKISFVLGCVGPSGGFGGGPGQDSHL  104 (342)
T ss_pred             ccccchHHHHHHHhhhccccchhhhhhhcchhhhhhccchHHHhcCcchhhhhhhhheeeeeeecCCCCcCCCCccchhH
Confidence            577899999999987665556677778899999999999999999875 6789999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhcCC---CCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHH
Q 026402           82 LYTLSAVQVLALFDK---VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIV  158 (239)
Q Consensus        82 ~~T~~al~~L~~l~~---~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~  158 (239)
                      .+|++|+++|.+++.   ++.++++.+.+||..+|+|||+|.+.-.+++|++..|+|+.++++++.++.++.+.+++||+
T Consensus       105 ~sT~~Ai~~L~~~d~~~~~~~idr~~l~~fi~~lk~pdGsF~~~~~gevDtr~~Y~al~ilsllg~~~~~~~e~~vdyl~  184 (342)
T COG5029         105 ASTVFAIQSLAMLDSLDVLSRIDRDSLASFISGLKNPDGSFRSDLEGEVDTRFLYIALSILSLLGDLDKELFEGAVDYLK  184 (342)
T ss_pred             HHHHHHHHHHHHhccccccchhhHHHHHHHHHhccCCCCceecccCCcchHHHHHHHHHHHHHHhhcchhhhHHHHHHHH
Confidence            999999999999975   45667888999999999999999998889999999999999999999999999999999999


Q ss_pred             hccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCC-HHHHHHHHHhccccCCccCCCCCCCCChhhhhhhhccCC
Q 026402          159 SCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVD-KDLLGWWLCERQVKSGGLNGRPEKLPDVGLLLLVGSFKL  236 (239)
Q Consensus       159 ~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~-~~~~~~~L~~~Q~~~GGf~~~~~k~~D~c~s~~~~~~l~  236 (239)
                      +|||.||||+..|+.|+|+++||||+++|++|+.++..+ ++++++||++||.+.|||+||+||.+|+||+||+++||.
T Consensus       185 kCqnyeGGFg~~p~aEaHag~tFcalaalalL~~Ld~ls~~E~l~~Wl~~RQ~ssgGl~GR~nKl~D~CYs~WvlsSl~  263 (342)
T COG5029         185 KCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLDKLSDVEKLIRWLAERQLSSGGLNGRSNKLVDTCYSFWVLSSLA  263 (342)
T ss_pred             HhhccCCcccCCCchhhccchHHHHHHHHHHHhcccccchHHHHHHHHHHcccccCCcCCCcccCccchhhhhhcchHH
Confidence            999999999999999999999999999999999999888 799999999999999999999999999999999999974

>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=1.2e-51  Score=351.63  Aligned_cols=233  Identities=22%  Similarity=0.349  Sum_probs=218.4

Q ss_pred             cccHHHHHHHHHHcc-cCCCCccccccccchHHHHHHHHHHHHhhCCCCCcC--HHHHHHHHHhccCCCCCCCCCCCCCC
Q 026402            3 ELAADKHVKYIISVE-KKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVD--EEDVISWILKCQDESGGFAGNIGHDP   79 (239)
Q Consensus         3 ~~~~~~~~~yl~~~q-~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~~~~--~~~~i~~l~~~q~~dGgf~~~~~~~~   79 (239)
                      .++++++++||+++| +++|+|......++++..||.|+.+|.+++..+.++  ++++++||+++|++||||+..++.++
T Consensus        48 ~~~~~~~i~fl~~~q~~~~GgF~~~~~~~~~~~~t~~a~~~L~ll~~~~~i~~~~~~~~~~i~~~q~~dGgf~~~~~~e~  127 (287)
T cd02894          48 RLNREEIIEFVKSCQDNEDGGFGGSPGHDPHILSTLSAIQILALYDLLNKIDENKEKIAKFIKGLQNEDGSFSGDKWGEV  127 (287)
T ss_pred             hhhHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHcCCCCCeecCCCCCc
Confidence            468899999999999 689999877666788889999999999987544456  89999999999999999999999999


Q ss_pred             chhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHh
Q 026402           80 HVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVS  159 (239)
Q Consensus        80 ~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~  159 (239)
                      |+..||+|+++|.+++..+.++++++++||.++|++||||+++|++++|+++|||++++|.+++..+..+.+++++||++
T Consensus       128 d~~~ty~a~~~l~ll~~~~~i~~~~~~~~l~~~q~~dGGF~~~~~~es~~~~t~cavasL~llg~~~~~~~~~~~~~L~~  207 (287)
T cd02894         128 DTRFSYCAVLCLTLLGKLDLIDVDKAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCE  207 (287)
T ss_pred             hHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHcCcccccCHHHHHHHHHH
Confidence            99999999999999988788899999999999999999999999999999999999999999999888899999999999


Q ss_pred             ccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhcc-ccCCccCCCCCCCCChhhhhhhhccC
Q 026402          160 CKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQ-VKSGGLNGRPEKLPDVGLLLLVGSFK  235 (239)
Q Consensus       160 ~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q-~~~GGf~~~~~k~~D~c~s~~~~~~l  235 (239)
                      +|+++|||+.+|+.++|++||||++++|.+++..+..+.+++.+||+++| .++|||+++|+|.+|+|||||++++|
T Consensus       208 ~q~~~GGf~gr~~k~~D~~ysf~~~a~l~~l~~~~~~~~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~L  284 (287)
T cd02894         208 RQLPSGGLNGRPEKLPDVCYSWWVLSSLKIIGRLHWINKNKLKNFILACQDEEDGGFADRPGNMVDVFHTFFGLAGL  284 (287)
T ss_pred             hCCCCCCcCCCCCCCCchhHhhHHHHHHHHhccccccCHHHHHHHHHHhcCCCCCCcCCCCCCCCChhHHHHHHHHH
Confidence            99999999999999999999999999999999877789999999999999 57899999999999999999999887

GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr

>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=1.1e-51  Score=352.23  Aligned_cols=230  Identities=45%  Similarity=0.795  Sum_probs=214.9

Q ss_pred             HHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCC-CCCcCHHHHHHHHHhcc-CCCCCCCCCCCCCCchhH
Q 026402            6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWILKCQ-DESGGFAGNIGHDPHVLY   83 (239)
Q Consensus         6 ~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~-~~~~~~~~~i~~l~~~q-~~dGgf~~~~~~~~~~~~   83 (239)
                      +++|++||++.++.+ .+.....++++++.+||++.+|.+|+. .+..+++++++||++|| ++||||+..+++++|+..
T Consensus         1 ~~~h~~~l~~~~~~~-~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~   79 (286)
T cd02890           1 REKHIKYLQRCLKLL-PSSYTSLDASRLWLLYWILSSLDLLGEDLDDENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLAS   79 (286)
T ss_pred             ChHHHHHHHHHhhcC-ChhhhhHHhhHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHH
Confidence            589999999999977 556566678999999999999999998 34558999999999999 999999999999999999


Q ss_pred             HHHHHHHHHhcCC--CCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhcc
Q 026402           84 TLSAVQVLALFDK--VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCK  161 (239)
Q Consensus        84 T~~al~~L~~l~~--~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~Q  161 (239)
                      ||+|+.+|.+++.  .+.++++++++||.++|++||||.+.+.+++|+++||++++++.+++.....+++++++||++||
T Consensus        80 T~~al~~l~llg~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~Q  159 (286)
T cd02890          80 TYAAVLSLAILGDDALSRIDREKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNILTDIDKEKLIDYILSCQ  159 (286)
T ss_pred             HHHHHHHHHHcCccccchhhHHHHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHhC
Confidence            9999999999987  57778999999999999999999999989999999999999999999877788999999999999


Q ss_pred             CCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccCC-ccCCCCCCCCChhhhhhhhccCC
Q 026402          162 NLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSG-GLNGRPEKLPDVGLLLLVGSFKL  236 (239)
Q Consensus       162 ~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~G-Gf~~~~~k~~D~c~s~~~~~~l~  236 (239)
                      ++||||+.+|+.++|+++||||+++|.+++..++++++++++||++||+++| ||++||+|.+|+||+||++++|.
T Consensus       160 ~~dGGf~~~~~~es~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~~q~~~ggGf~g~~~~~~d~~yt~~~~~~l~  235 (286)
T cd02890         160 NYDGGFGGVPGAESHGGYTFCAVASLALLGRLDLIDKERLLRWLVERQLASGGGFNGRPNKLVDTCYSFWVGASLK  235 (286)
T ss_pred             CCCCCcCCCCCCCCCccHhHHHHHHHHHcCCCcccCHHHHHHHHHHhCCCCCCCcCCCCCCCCccchhhHHHHHHH
Confidence            9999999999999999999999999999999888999999999999998887 99999999999999999999873

The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re

>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional

Probab=100.00  E-value=4.5e-50  Score=345.03  Aligned_cols=233  Identities=21%  Similarity=0.342  Sum_probs=220.2

Q ss_pred             cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhccCCCCCCCCCCCCCCchh
Q 026402            3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVL   82 (239)
Q Consensus         3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~   82 (239)
                      .++++++++||.++|+++|+|.....+++++..||+|+.+|.+++....++++++++||.++|++||||...++.+.|+.
T Consensus        55 ~~~~~~~i~~l~~cq~~~GGF~~~~~~~~h~~~Ty~al~~L~ll~~~~~id~~~~~~~l~s~Q~~dGgF~~~~~ge~D~r  134 (316)
T PLN03201         55 DVDRDEVVSWVMRCQHESGGFGGNTGHDPHILYTLSAVQILALFDRLDLLDADKVASYVAGLQNEDGSFSGDEWGEIDTR  134 (316)
T ss_pred             cccHHHHHHHHHHhcCCCCCcCCCCCCcccHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhcCCCCCccCCCCCCccHH
Confidence            57899999999999999999997776778999999999999999766567899999999999999999999888899999


Q ss_pred             HHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhccC
Q 026402           83 YTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN  162 (239)
Q Consensus        83 ~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~Q~  162 (239)
                      .||+|++++.+++..+.++++++++||.+||++||||+++|++|+|..+|||++++|.+++.++..+.+++++||.++|.
T Consensus       135 ~ty~a~a~l~LL~~~~~i~~~~~~~~i~scq~~dGGF~~~p~~esh~g~T~caiaaL~llg~~~~~d~~~l~~wL~~rQ~  214 (316)
T PLN03201        135 FSYCALCCLSLLKRLDKINVEKAVDYIVSCKNFDGGFGCTPGGESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQV  214 (316)
T ss_pred             HHHHHHHHHHHhCccchhHHHHHHHHHHHhcCCCCCcCCCCCCCCccceehHHHHHHHHcCccccCCHHHHHHHHHHhCC
Confidence            99999999999998777899999999999999999999999999999999999999999998877788999999999999


Q ss_pred             CCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhcccc-CCccCCCCCCCCChhhhhhhhccC
Q 026402          163 LDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDVGLLLLVGSFK  235 (239)
Q Consensus       163 ~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~-~GGf~~~~~k~~D~c~s~~~~~~l  235 (239)
                      ++|||+.+|++.+|++||||++++|.+++..+.+|.+++.+||++||++ .|||+++|+|.||.|||||.+++|
T Consensus       215 ~~GGf~grp~k~~D~cys~w~~a~L~ll~~~~~~d~~~l~~~i~~~q~~~~GGf~~~p~~~~D~~ht~~~l~~l  288 (316)
T PLN03201        215 KSGGLNGRPEKLPDVCYSWWVLSSLIIIDRVHWIDKDKLAKFILDCQDDENGGISDRPDDAVDVFHTFFGVAGL  288 (316)
T ss_pred             CCCCcCCCCCCCCchHHHHHHHHHHHHhccccccCHHHHHHHHHHHcCCCCCCcCCCcCCCCChhHHHHHHHHH
Confidence            9999999999999999999999999999988889999999999999975 799999999999999999999876

>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-50  Score=336.77  Aligned_cols=228  Identities=31%  Similarity=0.574  Sum_probs=210.9

Q ss_pred             HHHHHHHHHHcccCC-CCccccccccchHHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHhccCCCCCCCCCCCCCCchhH
Q 026402            6 ADKHVKYIISVEKKK-DSFESVVMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQDESGGFAGNIGHDPHVLY   83 (239)
Q Consensus         6 ~~~~~~yl~~~q~~d-g~~~~~~~~~~~~~~~y~al~~l~ll~~~-~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~   83 (239)
                      ++||..||.+..+.- ..|.  -.+.++.|..||.+.+|++|+.. +..-.+++|+||..||.|.|||++-||..+|+..
T Consensus        74 r~kH~~YL~~~Lr~Lp~~~~--~LDASR~Wm~YWil~sl~lL~~~~dd~v~~~~i~fL~~c~~PeGGfgGGPGQl~HLA~  151 (423)
T KOG0365|consen   74 RQKHLMYLDKMLRQLPSQYT--CLDASRPWMCYWILNSLALLDEWLDDDVKENAIDFLFTCQGPEGGFGGGPGQLPHLAP  151 (423)
T ss_pred             HHHHHHHHHHHHHhCCCccc--ccccCcchhHHHHHHHHHHhcCcCCHHHHHHHHHHHHhcCCCCCCCCCCCccchhhhH
Confidence            899999999977643 2233  34789999999999999999964 3345788999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCC---CCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhc
Q 026402           84 TLSAVQVLALFDK---VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC  160 (239)
Q Consensus        84 T~~al~~L~~l~~---~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~  160 (239)
                      ||+|+.+|.+++.   ++.+++++++.||.+++++||||....++|.|+|.+|||+++..+++.+.++-.+.+.+||.+|
T Consensus       152 TYAAVnaL~~~~~e~A~~~InR~~l~~fL~slK~~dGgFrmh~~GE~DvRs~YcA~svasllni~~deL~eG~~~wi~~C  231 (423)
T KOG0365|consen  152 TYAAVNALCLCGSEDAYSSINREKLYQFLFSLKDPDGGFRMHVEGEVDVRSAYCALSVASLLNIPMDELFEGTLDWIASC  231 (423)
T ss_pred             HHHHHHHHHhcCcHHHHHHhhHHHHHHHHHHhcCCCCCeEeecCCcchHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc
Confidence            9999999999975   5788999999999999999999999999999999999999999999998888889999999999


Q ss_pred             cCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccc-cCCccCCCCCCCCChhhhhhhhccC
Q 026402          161 KNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQV-KSGGLNGRPEKLPDVGLLLLVGSFK  235 (239)
Q Consensus       161 Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~-~~GGf~~~~~k~~D~c~s~~~~~~l  235 (239)
                      |+.+|||+..|+.|+|.+|||||+|+|++|+..+..|.+++.+|...||. .+|||+||.||.+|-|||||++++.
T Consensus       232 QtyEGG~GG~P~~EAHGGYTFCalAalalLn~~d~ln~~~Ll~W~~~RQm~~E~GFqGRtNKLVDGCYSFWvga~~  307 (423)
T KOG0365|consen  232 QTYEGGFGGEPGVEAHGGYTFCALAALALLNEMDQLNLEKLLEWAVRRQMRFEGGFQGRTNKLVDGCYSFWVGASA  307 (423)
T ss_pred             ccccCCcCCCccccccCCeeHHHHHHHHHHhhhhhhCHHHHHHHHHHhhhhhhccccccccchhhhhHHHHhcchH
Confidence            99999999999999999999999999999999999999999999999996 7899999999999999999999874

>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=8.3e-49  Score=334.43  Aligned_cols=233  Identities=25%  Similarity=0.434  Sum_probs=219.0

Q ss_pred             cccHHHHHHHHHHcc-cCCCCccccccccchHHHHHHHHHHHHhhCCC--CCcCHHHHHHHHHhccCCCCCCCCCCCCCC
Q 026402            3 ELAADKHVKYIISVE-KKKDSFESVVMEHLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQDESGGFAGNIGHDP   79 (239)
Q Consensus         3 ~~~~~~~~~yl~~~q-~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~--~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~   79 (239)
                      ..+++++++||+++| +++|+|.....+++++..||+|+.+|.+++..  ..++++++++||.++|++||||...+..++
T Consensus        46 ~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~T~~al~~l~llg~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~~~~~  125 (286)
T cd02890          46 DENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLASTYAAVLSLAILGDDALSRIDREKIYKFLSSLQNPDGSFRGDLGGEV  125 (286)
T ss_pred             hHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHHHHHHHHHHHHcCccccchhhHHHHHHHHHHhcCCCCCcccCCCCCc
Confidence            568999999999999 99999998777789999999999999999973  456889999999999999999999888899


Q ss_pred             chhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHh
Q 026402           80 HVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVS  159 (239)
Q Consensus        80 ~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~  159 (239)
                      |+..||+|+.+|.+++.....+++++++||.++|++||||+.+|++++|+++|||++++|.+++..+.++++++++||++
T Consensus       126 d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~es~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~  205 (286)
T cd02890         126 DTRFVYCALSILSLLNILTDIDKEKLIDYILSCQNYDGGFGGVPGAESHGGYTFCAVASLALLGRLDLIDKERLLRWLVE  205 (286)
T ss_pred             hHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHhCCCCCCcCCCCCCCCCccHhHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence            99999999999999987767789999999999999999999999999999999999999999999888899999999999


Q ss_pred             ccCCCC-CccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHH-hccccCCccCCCCCCCCChhhhhhhhccC
Q 026402          160 CKNLDG-GFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLC-ERQVKSGGLNGRPEKLPDVGLLLLVGSFK  235 (239)
Q Consensus       160 ~Q~~dG-Gf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~-~~Q~~~GGf~~~~~k~~D~c~s~~~~~~l  235 (239)
                      ||+++| ||+.+|+.++|++||||++++|.+++..+..+.+++.+||+ .+|.++|||+++|++.+|.|||||.+++|
T Consensus       206 ~q~~~ggGf~g~~~~~~d~~yt~~~~~~l~~l~~~~~~~~~~l~~~l~~~~q~~~Ggf~~~~~~~~d~~~T~~~l~~l  283 (286)
T cd02890         206 RQLASGGGFNGRPNKLVDTCYSFWVGASLKILGRLHLIDQEKLREYILSCQQSEVGGFSDKPGKPPDLYHTYYGLSGL  283 (286)
T ss_pred             hCCCCCCCcCCCCCCCCccchhhHHHHHHHHcccccccCHHHHHHHHHhhcCCCCCCcCCCCCCCCCchhHHHHHHHH
Confidence            999997 99999999999999999999999999877789999999999 56789999999999999999999999876

The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re

>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.7e-49  Score=323.04  Aligned_cols=232  Identities=34%  Similarity=0.592  Sum_probs=204.1

Q ss_pred             cccHHHHHHHHHHccc-CCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhccCCC--------CCCCC
Q 026402            3 ELAADKHVKYIISVEK-KKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDES--------GGFAG   73 (239)
Q Consensus         3 ~~~~~~~~~yl~~~q~-~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~q~~d--------Ggf~~   73 (239)
                      ++.++||++|+++..+ -+-.|...  +.+++..+||++.+|++|+..+.++++..|+||.+.|-..        .||-+
T Consensus        10 ~~~~~kH~~ff~RhL~llP~~y~sh--d~~R~tiafFaisGLd~L~~ld~v~k~d~i~Wiy~~~v~~~dr~~~k~~GF~G   87 (347)
T KOG0367|consen   10 RFERKKHIKFFERHLQLLPSPYQSH--DTNRLTIAFFAISGLDLLDALDSVDKDDIIEWIYKLQVTPTDRTNLKICGFRG   87 (347)
T ss_pred             hhhHHHHHHHHHHHHHhCCCccccc--ccchHHHHHHHHcchhhhhhhhccchhHHHHHHHhceeccccCCCceeeeeee
Confidence            6889999999999776 33444433  4688888999999999999988889999999999987422        24443


Q ss_pred             C----------CCCCCchhHHHHHHHHHHhcCC-CCCCCHHHHHHHHHhccCCCCCcccCC-CCCCCcchhHHHHhHHHh
Q 026402           74 N----------IGHDPHVLYTLSAVQVLALFDK-VDILDADKVSNYIVGLQNEDGSFSGDI-WGEVDTRFSYIAICCLSI  141 (239)
Q Consensus        74 ~----------~~~~~~~~~T~~al~~L~~l~~-~~~~~~~~~~~~l~~~Q~~dGgf~~~~-~~~~d~~~ty~al~~l~~  141 (239)
                      +          +..++|+..||.++..|..+++ ++.+|++.+++++..+|++||+|...+ +.++|+|+.|||++++++
T Consensus        88 sr~~~~p~~~~~~~~~~lA~Ty~sl~~L~~lGddLsrlDrksil~~v~~~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ym  167 (347)
T KOG0367|consen   88 SRSMNIPIATNTYNEPHLAMTYTSLACLVILGDDLSRLDRKSILRFVSACQRPDGSFVSINVGSESDMRFVYCAVAICYM  167 (347)
T ss_pred             eccccCCCCCCCCcchhHHHHHHHHHHHHHHcchHhhhhHHHHHHHHHHhcCCCCceeecCCCCchhhHHHHHHHHHHHH
Confidence            2          1246899999999999999975 788999999999999999999998655 468999999999999999


Q ss_pred             hccCChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCC--C----CCCHHHHHHHHHhccccCCcc
Q 026402          142 LQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGAL--H----HVDKDLLGWWLCERQVKSGGL  215 (239)
Q Consensus       142 l~~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~--~----~~~~~~~~~~L~~~Q~~~GGf  215 (239)
                      ++....++.++++.||++||++||||+..|+.|+|.++|||||++|++++++  +    ..+++++++|+..||..+|||
T Consensus       168 Ld~~s~iD~ek~~~yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~~~l~~e~l~~~~~~erlirWli~RQ~~sgGf  247 (347)
T KOG0367|consen  168 LDFWSGIDKEKLIGYIRSSQRYDGGFGQHPGGESHGGATFCALASLALMGKLIPEELSNTSKVERLIRWLIQRQVSSGGF  247 (347)
T ss_pred             hccccccCHHHHHHHHHHhhccccccccCCCCCCCcchhHHHHHHHHHHhhhhhhhhccccCHHHHHHHHHHHhhccCCc
Confidence            9988889999999999999999999999999999999999999999999986  2    345899999999999999999


Q ss_pred             CCCCCCCCChhhhhhhhccCC
Q 026402          216 NGRPEKLPDVGLLLLVGSFKL  236 (239)
Q Consensus       216 ~~~~~k~~D~c~s~~~~~~l~  236 (239)
                      +|||||++|+||+||++++|+
T Consensus       248 qGR~NKp~DTCYaFWigasLk  268 (347)
T KOG0367|consen  248 QGRTNKPVDTCYAFWIGASLK  268 (347)
T ss_pred             CCCCCCCchhHHHHHHHHHHH
Confidence            999999999999999999985

>PLN02710 farnesyltranstransferase subunit beta

Probab=100.00  E-value=1e-47  Score=338.12  Aligned_cols=233  Identities=18%  Similarity=0.301  Sum_probs=216.3

Q ss_pred             cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhccCCCCCCCCCCCCCC
Q 026402            3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGHDP   79 (239)
Q Consensus         3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~   79 (239)
                      +.+++++++||.++|+++|||....++.+++..||+|+.+|.+|+..   ..++++++++||++||++||||...++.++
T Consensus        91 ~~~~~~ii~~l~~cQ~~dGGFgg~pg~~~hl~~TY~Av~~L~iLg~~~~l~~Idr~~l~~fl~s~q~~dGgF~~~~~gE~  170 (439)
T PLN02710         91 DELENDTIDFLSRCQDPNGGYGGGPGQLPHLATTYAAVNTLVTIGGERALSSINREKLYTFLLRMKDPSGGFRMHDGGEM  170 (439)
T ss_pred             HHHHHHHHHHHHHhcCCCcCCCCCCCCCccHHHHHHHHHHHHHcCCchhhcccCHHHHHHHHHHcCCCCCCcccCCCCCC
Confidence            45779999999999999999998877889999999999999999964   356899999999999999999999999999


Q ss_pred             chhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHh
Q 026402           80 HVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVS  159 (239)
Q Consensus        80 ~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~  159 (239)
                      |+..||+|++++.+++.++..+++++++||.+||+.||||+++|++|+|.++|||++++|.+++.++.++.+++++||++
T Consensus       171 D~R~tYcAlail~LL~~l~~~~~e~~~~~I~scQ~~dGGF~g~P~~EaH~gyTfcavAsL~LLg~l~~id~~~l~~WL~~  250 (439)
T PLN02710        171 DVRACYTAISVASLLNILDDELVKGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMILINEVDRLDLPSLINWVVF  250 (439)
T ss_pred             CcCCcHHHHHHHHHhCcCchhhHHHHHHHHHHhCCCCCCCCCCCCCCCchHHHHHHHHHHHHcCCccccCHHHHHHHHHH
Confidence            99999999999999998877889999999999999999999999999999999999999999999888899999999999


Q ss_pred             ccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCC---------------------------------------------
Q 026402          160 CKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALH---------------------------------------------  194 (239)
Q Consensus       160 ~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~---------------------------------------------  194 (239)
                      +|+.+|||+++|++.+|++|+||++++|+++++..                                             
T Consensus       251 rQ~~~GGF~GR~nKl~D~CYSfW~~a~L~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (439)
T PLN02710        251 RQGVEGGFQGRTNKLVDGCYSFWQGGVFALLQQLVTIVDEQLQTGGSSIMFEELEDDACETSSSGKDDAGDTDSADYSKV  330 (439)
T ss_pred             hcCcCCCcCCCCCCCCCchhhHHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999999998531                                             


Q ss_pred             --------------CCCHHHHHHHHHhcc-ccCCccCCCCCCCCChhhhhhhhccC
Q 026402          195 --------------HVDKDLLGWWLCERQ-VKSGGLNGRPEKLPDVGLLLLVGSFK  235 (239)
Q Consensus       195 --------------~~~~~~~~~~L~~~Q-~~~GGf~~~~~k~~D~c~s~~~~~~l  235 (239)
                                    .++.+++.+||+.|| .+.|||+..|+|.+|.+||+++++.|
T Consensus       331 ~~~~~~~~~~~~~~~~d~~aL~~yIL~c~q~~~GG~~DkPgk~~D~YHT~y~LsGL  386 (439)
T PLN02710        331 GFDFIKASNQQMGPLFHSIALQQYILLCSQVLDGGLRDKPGKSRDYYHTCYCLSGL  386 (439)
T ss_pred             ccccccccccccccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHH
Confidence                          145678999999885 67899999999999999999999876

>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold)

Probab=100.00  E-value=2.9e-47  Score=325.61  Aligned_cols=233  Identities=22%  Similarity=0.328  Sum_probs=216.0

Q ss_pred             cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhccCCCCCCCCCCCCCC
Q 026402            3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGHDP   79 (239)
Q Consensus         3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~   79 (239)
                      ++++++.++||+++|+++|+|.....+++++..||+|+.+|.+++..   ..++++++++||+++|++||||...++.++
T Consensus        46 ~~~~~~~i~~i~~~q~~~GgF~~~~~~~~h~~~Ty~A~~~L~ll~~~~~~~~id~~~~~~~l~~~q~~dGgf~~~~~~e~  125 (299)
T cd02893          46 QSYADDVISFLRRCQNPSGGFGGGPGQLPHLATTYAAVNALAIIGTEEAYDVIDREALYKFLLSLKQPDGSFRMHVGGEV  125 (299)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCCCccHHHHHHHHHHHHHhCCchhhhHhhHHHHHHHHHHhcCCCCCeeCCCCCCc
Confidence            35679999999999999999998777789999999999999999974   345788999999999999999999999999


Q ss_pred             chhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHh
Q 026402           80 HVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVS  159 (239)
Q Consensus        80 ~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~  159 (239)
                      |+..||+|+.++.+++..+..+++++++||.+||++||||++.|++++|.++|||++++|.+++..+.++.+++++||++
T Consensus       126 D~r~tycava~~~lL~~~~~~~~~~~~~~l~~cQ~~dGGF~~~p~~e~h~~yTfcavasL~llg~~~~~d~~~l~~wl~~  205 (299)
T cd02893         126 DVRGTYCAISVASLLNILTDELFEGVAEYILSCQTYEGGFGGVPGNEAHGGYTFCALAALAILGKPDKLDLESLLRWLVA  205 (299)
T ss_pred             hHhHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCccccCHHHHHHHHHh
Confidence            99999999999999988777789999999999999999999999999999999999999999998877899999999999


Q ss_pred             ccCC-CCCccCCCCCCCchhhHHHHHHHHHHhCCC-------------CCCCHHHHHHHHHhcc-ccCCccCCCCCCCCC
Q 026402          160 CKNL-DGGFGCTPGGESHSGQIFCCVGALAIAGAL-------------HHVDKDLLGWWLCERQ-VKSGGLNGRPEKLPD  224 (239)
Q Consensus       160 ~Q~~-dGGf~~~~~~~s~~~~T~~al~aL~~l~~~-------------~~~~~~~~~~~L~~~Q-~~~GGf~~~~~k~~D  224 (239)
                      +|.+ +|||+.+|++.+|++||||++++|.+++..             ..++.+++.+||+.+| .++|||+++|++.+|
T Consensus       206 ~q~~~~GGf~grp~k~~D~cys~w~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~q~~~GGf~~~p~~~~D  285 (299)
T cd02893         206 RQMRFEGGFQGRTNKLVDGCYSFWVGGSLPILEAILNAEKKFDDSAEGTLFDQEALQEYILLCCQSEEGGLRDKPGKPRD  285 (299)
T ss_pred             hcCCCCCCcCCCCCCCCccHHHHHHHHHHHHHHHHhcccccccccccccccCHHHHHHHHHHhcCCCCCCcCCCCCCCCC
Confidence            9988 899999999999999999999999999863             3468899999999665 678999999999999


Q ss_pred             hhhhhhhhccC
Q 026402          225 VGLLLLVGSFK  235 (239)
Q Consensus       225 ~c~s~~~~~~l  235 (239)
                      .+||+..+++|
T Consensus       286 ~yHT~~~l~~L  296 (299)
T cd02893         286 FYHTCYALSGL  296 (299)
T ss_pred             chhHHHHHHHH
Confidence            99999999876

FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro

>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.7e-41  Score=272.98  Aligned_cols=233  Identities=21%  Similarity=0.336  Sum_probs=223.1

Q ss_pred             cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhccCCCCCCCCCCCCCCchh
Q 026402            3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVL   82 (239)
Q Consensus         3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~   82 (239)
                      .+++|+++.|++++|+.+|||....+..+.+-.|+.||.+|++....+..++++++.||...|++||.|......+-++.
T Consensus        65 ~~~~eeiv~~v~~C~~~~GGfa~~~Ghd~hll~TlsAvQiL~~ydsi~~~d~d~v~~yi~gLq~edGsF~gD~wGEvDTR  144 (329)
T KOG0366|consen   65 RMSREEIVSFVLSCQHEDGGFAGCPGHDPHLLYTLSAVQILALYDSINVLDRDKVASYIKGLQQEDGSFSGDIWGEVDTR  144 (329)
T ss_pred             hhhHHHHHHHHHheecCCCCcCCCCCCChHHHHHHHHHHHHHHHcccccccHHHHHHHHHhhcCcCCcccCCcccccchh
Confidence            67899999999999999999998888888898899999999999877667899999999999999999999888899999


Q ss_pred             HHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhccC
Q 026402           83 YTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN  162 (239)
Q Consensus        83 ~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~Q~  162 (239)
                      .+|+|+..|.+|+.++.++++++++|+.+|.|-||||+..|+.|++....||.+++|++++++...+.+.+-.||-..|.
T Consensus       145 fs~~av~~L~lLg~ld~~nve~aVd~~~~CyN~DGGFG~~pGaESHagqifcCvgaLai~~~L~~vd~d~lgwwlceRQ~  224 (329)
T KOG0366|consen  145 FSYCAVACLALLGKLDTINVEKAVDFVLSCYNFDGGFGCRPGAESHAGQIFCCVGALAITGKLHLVDRDLLGWWLCERQL  224 (329)
T ss_pred             hhHHHHHHHHHHhhHHHhhHHHHHHHHHhhcccCCCcCCCCCcccccceehhhHHHHHHccchhhcCHHHHHHHHHhccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccc-cCCccCCCCCCCCChhhhhhhhccC
Q 026402          163 LDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQV-KSGGLNGRPEKLPDVGLLLLVGSFK  235 (239)
Q Consensus       163 ~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~-~~GGf~~~~~k~~D~c~s~~~~~~l  235 (239)
                      +.||...+|.+-+|.+|.+|++++|+++++++.++.+++.+||++||. +.|||+.||+..+|+.|+++++|.|
T Consensus       225 ~sGGLNGRpeKlpDVCYSwWvlsSL~iigrl~wId~ekL~~FIl~cQd~~~GGfsDRpgd~~D~fHt~FgiAGL  298 (329)
T KOG0366|consen  225 PSGGLNGRPEKLPDVCYSWWVLSSLAIIGRLHWIDREKLTKFILACQDEETGGFSDRPGDEVDIFHTLFGIAGL  298 (329)
T ss_pred             CCCCCCCCcccCcchhhHHHHHhHHHHhhhhhhccHHHHHHHHHhcCCCCCCCcCCCCCCcccHHHHHHHHhhH
Confidence            999999999999999999999999999999999999999999999995 8999999999999999999998865

>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.6e-40  Score=272.02  Aligned_cols=232  Identities=20%  Similarity=0.366  Sum_probs=217.0

Q ss_pred             ccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhccCCCCCCCCCCCCCCc
Q 026402            4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGHDPH   80 (239)
Q Consensus         4 ~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~   80 (239)
                      +++|+.+-|+.+++.+.|+|+....+++.+..||+|+.+|.+++..   ...+++.+.+||.++|+|||+|-....++.+
T Consensus        75 ~~~er~i~~v~~~~~~~G~f~~~~g~~~hL~sT~~Ai~~L~~~d~~~~~~~idr~~l~~fi~~lk~pdGsF~~~~~gevD  154 (342)
T COG5029          75 VDKERKISFVLGCVGPSGGFGGGPGQDSHLASTVFAIQSLAMLDSLDVLSRIDRDSLASFISGLKNPDGSFRSDLEGEVD  154 (342)
T ss_pred             hhhhhhheeeeeeecCCCCcCCCCccchhHHHHHHHHHHHHHhccccccchhhHHHHHHHHHhccCCCCceecccCCcch
Confidence            4678899999999999999998888899999999999999999743   3457888999999999999999988778899


Q ss_pred             hhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhc-HHHHHHHHHh
Q 026402           81 VLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKIN-VDKAVEYIVS  159 (239)
Q Consensus        81 ~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~-~~~~~~~l~~  159 (239)
                      ....|.|+.+|.+++.++..+.+.+++||++||+.||||+..|..|++..+|||++++|++++.++..+ .|++++||.+
T Consensus       155 tr~~Y~al~ilsllg~~~~~~~e~~vdyl~kCqnyeGGFg~~p~aEaHag~tFcalaalalL~~Ld~ls~~E~l~~Wl~~  234 (342)
T COG5029         155 TRFLYIALSILSLLGDLDKELFEGAVDYLKKCQNYEGGFGLCPYAEAHAGYTFCALAALALLGKLDKLSDVEKLIRWLAE  234 (342)
T ss_pred             HHHHHHHHHHHHHHhhcchhhhHHHHHHHHHhhccCCcccCCCchhhccchHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence            999999999999999988889999999999999999999999999999999999999999999998877 6999999999


Q ss_pred             ccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhcccc-CCccCCCCCCCCChhhhhhhhccC
Q 026402          160 CKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDVGLLLLVGSFK  235 (239)
Q Consensus       160 ~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~-~GGf~~~~~k~~D~c~s~~~~~~l  235 (239)
                      +|.+.|||.+++++.+|.+|.||++++|+++++.+.++.+++.+||+.||.+ .|||+.+|.+.+|.+||=++++.|
T Consensus       235 RQ~ssgGl~GR~nKl~D~CYs~WvlsSl~il~~~~~in~e~L~~yiL~c~q~~sGGfsdrp~~~~D~yHt~~~lagL  311 (342)
T COG5029         235 RQLSSGGLNGRSNKLVDTCYSFWVLSSLAILGKLDFINTEELTDYILDCQQETSGGFSDRPGEEPDVYHTCFGLAGL  311 (342)
T ss_pred             cccccCCcCCCcccCccchhhhhhcchHHhcchhhhcCHHHHHHHHHhhcccCCCCCCCCCcccchHHHHHHHHHHH
Confidence            9999999999999999999999999999999998889999999999999865 899999999999999999988876

>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.5e-36  Score=246.98  Aligned_cols=233  Identities=22%  Similarity=0.361  Sum_probs=207.5

Q ss_pred             cccHHHHHHHHHHccc-C--CCC-----cccc----------ccccchHHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHh
Q 026402            3 ELAADKHVKYIISVEK-K--KDS-----FESV----------VMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILK   63 (239)
Q Consensus         3 ~~~~~~~~~yl~~~q~-~--dg~-----~~~~----------~~~~~~~~~~y~al~~l~ll~~~-~~~~~~~~i~~l~~   63 (239)
                      .++++.+++||.+.|- |  +.+     |..+          ..+.+.+..||++++.|..||.. ..++++.+++++..
T Consensus        57 ~v~k~d~i~Wiy~~~v~~~dr~~~k~~GF~Gsr~~~~p~~~~~~~~~~lA~Ty~sl~~L~~lGddLsrlDrksil~~v~~  136 (347)
T KOG0367|consen   57 SVDKDDIIEWIYKLQVTPTDRTNLKICGFRGSRSMNIPIATNTYNEPHLAMTYTSLACLVILGDDLSRLDRKSILRFVSA  136 (347)
T ss_pred             ccchhHHHHHHHhceeccccCCCceeeeeeeeccccCCCCCCCCcchhHHHHHHHHHHHHHHcchHhhhhHHHHHHHHHH
Confidence            4678899999999885 3  122     3211          12456788999999999999975 45789999999999


Q ss_pred             ccCCCCCCCCCC-CCCCchhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhh
Q 026402           64 CQDESGGFAGNI-GHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSIL  142 (239)
Q Consensus        64 ~q~~dGgf~~~~-~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l  142 (239)
                      ||++||.|.... |.++++..-|+|+.+..+++..+.+|.++++.||+++|+.||||+..|++|++..+||||+++|+++
T Consensus       137 ~Q~~dGsF~~~~~GSe~DmRFvYcA~aI~ymLd~~s~iD~ek~~~yI~~~q~YdgGfg~~pg~EsHgG~TfCAlAsL~L~  216 (347)
T KOG0367|consen  137 CQRPDGSFVSINVGSESDMRFVYCAVAICYMLDFWSGIDKEKLIGYIRSSQRYDGGFGQHPGGESHGGATFCALASLALM  216 (347)
T ss_pred             hcCCCCceeecCCCCchhhHHHHHHHHHHHHhccccccCHHHHHHHHHHhhccccccccCCCCCCCcchhHHHHHHHHHH
Confidence            999999998754 7889999999999999999988999999999999999999999999999999999999999999999


Q ss_pred             ccC------ChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccC-Ccc
Q 026402          143 QRL------DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKS-GGL  215 (239)
Q Consensus       143 ~~~------~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~-GGf  215 (239)
                      +++      +..+++++++|+.+.|..+|||.++++++.|.+|.||..++|.+|+....++.+++.+||+.+|.+- |||
T Consensus       217 ~~l~~e~l~~~~~~erlirWli~RQ~~sgGfqGR~NKp~DTCYaFWigasLklL~~~~~~d~~~lr~fll~~Q~~~iGGF  296 (347)
T KOG0367|consen  217 GKLIPEELSNTSKVERLIRWLIQRQVSSGGFQGRTNKPVDTCYAFWIGASLKLLDADWLIDKQVLRKFLLSTQDKLIGGF  296 (347)
T ss_pred             hhhhhhhhccccCHHHHHHHHHHHhhccCCcCCCCCCCchhHHHHHHHHHHHHccchHhhhHHHHHHHHHHhhhhhcCcc
Confidence            986      2345899999999999999999999999999999999999999999887889999999999999765 999


Q ss_pred             CCCCCCCCChhhhhhhhccC
Q 026402          216 NGRPEKLPDVGLLLLVGSFK  235 (239)
Q Consensus       216 ~~~~~k~~D~c~s~~~~~~l  235 (239)
                      .+.|+..||..|||.+.++|
T Consensus       297 sK~P~~~pD~~HsylG~~al  316 (347)
T KOG0367|consen  297 SKWPEEDPDLLHSYLGLAAL  316 (347)
T ss_pred             cCCCccCchHHHHHHHHHHH
Confidence            99999999999999998875

>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-33  Score=235.22  Aligned_cols=230  Identities=20%  Similarity=0.312  Sum_probs=207.5

Q ss_pred             HHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCC---CcCHHHHHHHHHhccCCCCCCCCCCCCCCchh
Q 026402            6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILKCQDESGGFAGNIGHDPHVL   82 (239)
Q Consensus         6 ~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~---~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~   82 (239)
                      .+++++||..+|.|.|||+.-+++.+.+..||-||.+|-+++..+   .+++++..+||.++.++||||-...+++.++.
T Consensus       122 ~~~~i~fL~~c~~PeGGfgGGPGQl~HLA~TYAAVnaL~~~~~e~A~~~InR~~l~~fL~slK~~dGgFrmh~~GE~DvR  201 (423)
T KOG0365|consen  122 KENAIDFLFTCQGPEGGFGGGPGQLPHLAPTYAAVNALCLCGSEDAYSSINREKLYQFLFSLKDPDGGFRMHVEGEVDVR  201 (423)
T ss_pred             HHHHHHHHHhcCCCCCCCCCCCccchhhhHHHHHHHHHHhcCcHHHHHHhhHHHHHHHHHHhcCCCCCeEeecCCcchHH
Confidence            579999999999999999988888899999999999999999753   57999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhccC
Q 026402           83 YTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN  162 (239)
Q Consensus        83 ~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~Q~  162 (239)
                      +.|+|+.+-.+++-....--+...+||.+||+.+|||++.|..|++..||||++++|.+++..+..+.+++.+|..+.|.
T Consensus       202 s~YcA~svasllni~~deL~eG~~~wi~~CQtyEGG~GG~P~~EAHGGYTFCalAalalLn~~d~ln~~~Ll~W~~~RQm  281 (423)
T KOG0365|consen  202 SAYCALSVASLLNIPMDELFEGTLDWIASCQTYEGGFGGEPGVEAHGGYTFCALAALALLNEMDQLNLEKLLEWAVRRQM  281 (423)
T ss_pred             HHHHHHHHHHHHCCCcHHHHHHHHHHHHhcccccCCcCCCccccccCCeeHHHHHHHHHHhhhhhhCHHHHHHHHHHhhh
Confidence            99999998888875443335788999999999999999999999999999999999999999999999999999999998


Q ss_pred             -CCCCccCCCCCCCchhhHHHHHHHHHHhCCC-----C-----CCCHHHHHHHHHh-ccccCCccCCCCCCCCChhhhhh
Q 026402          163 -LDGGFGCTPGGESHSGQIFCCVGALAIAGAL-----H-----HVDKDLLGWWLCE-RQVKSGGLNGRPEKLPDVGLLLL  230 (239)
Q Consensus       163 -~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~-----~-----~~~~~~~~~~L~~-~Q~~~GGf~~~~~k~~D~c~s~~  230 (239)
                       ..|||..+.++-.|.+|+||.-+...++...     +     ..+.+++.+|++. ||.++|||..-|+|+.|.+|+=+
T Consensus       282 ~~E~GFqGRtNKLVDGCYSFWvga~~~il~~~~~~~~~s~~~~~F~~~~LqeYIL~CcQ~~~GGlrDKP~K~~DfYHTCY  361 (423)
T KOG0365|consen  282 RFEGGFQGRTNKLVDGCYSFWVGASAPILQAFYSSAGHSLEHLLFNKEALQEYILLCCQSPSGGLRDKPGKPRDFYHTCY  361 (423)
T ss_pred             hhhccccccccchhhhhHHHHhcchHHHHHHHhcccccchhhhhcCHHHHHHHHHhhccCCCCCccCCCCCCcchhhhhh
Confidence             6899999999999999999998888877531     1     3678999999986 59999999999999999999988


Q ss_pred             hhccC
Q 026402          231 VGSFK  235 (239)
Q Consensus       231 ~~~~l  235 (239)
                      +++.|
T Consensus       362 cLsGL  366 (423)
T KOG0365|consen  362 CLSGL  366 (423)
T ss_pred             Hhcch
Confidence            87765

>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement

Probab=99.98  E-value=4.3e-31  Score=223.48  Aligned_cols=231  Identities=26%  Similarity=0.321  Sum_probs=202.2

Q ss_pred             ccHHHHHHHHHHcccCCCCccccccc-cchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhccCCCCCCCCCCCC--
Q 026402            4 LAADKHVKYIISVEKKKDSFESVVME-HLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGH--   77 (239)
Q Consensus         4 ~~~~~~~~yl~~~q~~dg~~~~~~~~-~~~~~~~y~al~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~--   77 (239)
                      -.++++++||.+.|++||+|..+... .++++.|++++.+|..++..   .....+++++||.++|++||||......  
T Consensus        52 ~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~  131 (300)
T cd00688          52 ENIEKGIQRLLSYQLSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNEDGGFREDGPGNH  131 (300)
T ss_pred             HHHHHHHHHHHhccCCCCCccCCCCCCCcchHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCCCCeeeecCCCC
Confidence            46789999999999999999987655 68999999999999999864   2336889999999999999999977553  


Q ss_pred             -----CCchhHHHHHHHHHHhcCCCC-CCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHH
Q 026402           78 -----DPHVLYTLSAVQVLALFDKVD-ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVD  151 (239)
Q Consensus        78 -----~~~~~~T~~al~~L~~l~~~~-~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~  151 (239)
                           .+++..|++++.+|..++... ...++++++||.++|++||||  .+..++++..|++++.+|..++......++
T Consensus       132 ~~~~~~~~~~~t~~al~aL~~~~~~~~~~~~~~~~~~l~~~q~~~g~~--~~~~~~~~~~t~~~~~aL~~~~~~~~~~~~  209 (300)
T cd00688         132 RIGGDESDVRLTAYALIALALLGKLDPDPLIEKALDYLLSCQNYDGGF--GPGGESHGYGTACAAAALALLGDLDSPDAK  209 (300)
T ss_pred             cccCCCCcccHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHhcCCCCc--CCCccccHHHHHHHHHHHHHcCCcchHHHH
Confidence                 678899999999999887643 446899999999999999999  566678999999999999998875456789


Q ss_pred             HHHHHHHhccCCCCCccCCC---CCCCchhhHHHHHHHHHHhCCC-CCCCHHHHHHHHHhccccCCccCCCCCCCCChhh
Q 026402          152 KAVEYIVSCKNLDGGFGCTP---GGESHSGQIFCCVGALAIAGAL-HHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGL  227 (239)
Q Consensus       152 ~~~~~l~~~Q~~dGGf~~~~---~~~s~~~~T~~al~aL~~l~~~-~~~~~~~~~~~L~~~Q~~~GGf~~~~~k~~D~c~  227 (239)
                      ++++||+++|.++|||...+   ...++..+|++++.+|..++.. +....+++++||+++|.++|||...|.+.+|+++
T Consensus       210 ~~~~~L~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~aL~~~~~~~~~~~~~~~~~~L~~~q~~~G~w~~~~~~~~~~~~  289 (300)
T cd00688         210 KALRWLLSRQRPDGGWGEGRDRTNKLSDSCYTEWAAYALLALGKLGDLEDAEKLVKWLLSQQNEDGGFSSKPGKSYDTQH  289 (300)
T ss_pred             HHHHHHHHhcCCCCCcCccccCCCCcCchHHHHHHHHHHHHHhhhcCcccHHHHHHHHHhccCCCCCcCcCCCCCCcchh
Confidence            99999999999999998875   6678999999999999988764 4567899999999999999999999999999999


Q ss_pred             hhhhhccCC
Q 026402          228 LLLVGSFKL  236 (239)
Q Consensus       228 s~~~~~~l~  236 (239)
                      ++|++.+|.
T Consensus       290 t~~al~aL~  298 (300)
T cd00688         290 TVFALLALS  298 (300)
T ss_pred             hHHHHHHHh
Confidence            999998874

Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.

>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement

Probab=99.97  E-value=7.3e-29  Score=209.80  Aligned_cols=228  Identities=33%  Similarity=0.483  Sum_probs=194.2

Q ss_pred             HHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC------CCcCHHHHHHHHHhccCCCCCCCCCCCC-C
Q 026402            6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL------DAVDEEDVISWILKCQDESGGFAGNIGH-D   78 (239)
Q Consensus         6 ~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~------~~~~~~~~i~~l~~~q~~dGgf~~~~~~-~   78 (239)
                      ++++++||++.+.++|+|.... ....++.+++++.++..++..      ....++++++||.++|++||||+..++. .
T Consensus         1 ~~~~~~~L~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~   79 (300)
T cd00688           1 IEKHLKYLLRYPYGDGHWYQSL-CGEQTWSTAWPLLALLLLLAATGIRDKADENIEKGIQRLLSYQLSDGGFSGWGGNDY   79 (300)
T ss_pred             ChhHHHHHHHccccCCCccccC-CcCcHHHHHHHHHHHHHhCCcccccccchHHHHHHHHHHHhccCCCCCccCCCCCCC
Confidence            3689999999999999874322 246677899999999888752      2347899999999999999999998776 7


Q ss_pred             CchhHHHHHHHHHHhcCCC---CCCCHHHHHHHHHhccCCCCCcccCCCC-------CCCcchhHHHHhHHHhhccCC-h
Q 026402           79 PHVLYTLSAVQVLALFDKV---DILDADKVSNYIVGLQNEDGSFSGDIWG-------EVDTRFSYIAICCLSILQRLD-K  147 (239)
Q Consensus        79 ~~~~~T~~al~~L~~l~~~---~~~~~~~~~~~l~~~Q~~dGgf~~~~~~-------~~d~~~ty~al~~l~~l~~~~-~  147 (239)
                      +++..|++++.+|..++..   ....++++++||.++|++||+|......       ..++..|++++.+|..++... .
T Consensus        80 ~~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~~~~~~~t~~al~aL~~~~~~~~~  159 (300)
T cd00688          80 PSLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRLTAYALIALALLGKLDPD  159 (300)
T ss_pred             cchHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCCCCeeeecCCCCcccCCCCcccHHHHHHHHHHHcCCCCCc
Confidence            9999999999999988753   3345789999999999999999865432       578889999999999888743 5


Q ss_pred             hcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccCCccCCCC---CCCCC
Q 026402          148 INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRP---EKLPD  224 (239)
Q Consensus       148 ~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~---~k~~D  224 (239)
                      ..++++++||.++|++||||  .++.++++..|++++.+|..++.......+++++||+++|.++|||...+   .+.+|
T Consensus       160 ~~~~~~~~~l~~~q~~~g~~--~~~~~~~~~~t~~~~~aL~~~~~~~~~~~~~~~~~L~~~q~~~g~~~~~~~~~~~~~~  237 (300)
T cd00688         160 PLIEKALDYLLSCQNYDGGF--GPGGESHGYGTACAAAALALLGDLDSPDAKKALRWLLSRQRPDGGWGEGRDRTNKLSD  237 (300)
T ss_pred             HHHHHHHHHHHHHhcCCCCc--CCCccccHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCCcCccccCCCCcCc
Confidence            67899999999999999999  67778999999999999999986545678999999999999999999885   89999


Q ss_pred             hhhhhhhhccCC
Q 026402          225 VGLLLLVGSFKL  236 (239)
Q Consensus       225 ~c~s~~~~~~l~  236 (239)
                      .|+++|++.+|.
T Consensus       238 ~~~~~~~~~aL~  249 (300)
T cd00688         238 SCYTEWAAYALL  249 (300)
T ss_pred             hHHHHHHHHHHH
Confidence            999999988774

Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.

>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase

Probab=99.95  E-value=1.9e-26  Score=214.57  Aligned_cols=221  Identities=22%  Similarity=0.220  Sum_probs=169.1

Q ss_pred             HHHHHHHHHHccc--------------CCCCcccccc--ccchHHHHHHHHHHHHhhCC---C-----CCcCHHHHHHHH
Q 026402            6 ADKHVKYIISVEK--------------KKDSFESVVM--EHLRLNGAYWGLTTLDILGK---L-----DAVDEEDVISWI   61 (239)
Q Consensus         6 ~~~~~~yl~~~q~--------------~dg~~~~~~~--~~~~~~~~y~al~~l~ll~~---~-----~~~~~~~~i~~l   61 (239)
                      .+|+.+||++.|.              ++|||.....  ..++...|--++.+|..+..   .     +....+++++||
T Consensus       330 l~kA~~wL~~~Q~~~~~gd~~~~~~~~~~GGW~f~~~~~~~pdsD~Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~L  409 (634)
T TIGR03463       330 LERAARFLEANQMLEDTAEPQRFFRDPAKGGWCFSDGDHGWPVSDCTAEALSASLVLEPLGLNPEERVPQARLQDAVEFI  409 (634)
T ss_pred             HHHHHHHHHHhcCCcCCCCchhcCCCCCCCccccccCCCCCCccccHHHHHHHHHHHhhcCCcccccccHHHHHHHHHHH
Confidence            4699999999994              5688875532  23444456667766655332   1     112577899999


Q ss_pred             HhccCCCCCCCCCCC---------------------CCCchhHHHHHHHHHHhcCCCCC--------CCHHHHHHHHHhc
Q 026402           62 LKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKVDI--------LDADKVSNYIVGL  112 (239)
Q Consensus        62 ~~~q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~~~--------~~~~~~~~~l~~~  112 (239)
                      +++||+||||+.++.                     ..+++..|..+|.+|..+.....        ..++++++||++.
T Consensus       410 l~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~  489 (634)
T TIGR03463       410 LSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSR  489 (634)
T ss_pred             HHhcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHh
Confidence            999999999996542                     34678899999999988754221        1268899999999


Q ss_pred             cCCCCCcccCCCCCCCcchhHHHHhHHHhhccC-ChhcHHHHHHHHHhccCCCCCccCC----------CCCCCchhhHH
Q 026402          113 QNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCT----------PGGESHSGQIF  181 (239)
Q Consensus       113 Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~-~~~~~~~~~~~l~~~Q~~dGGf~~~----------~~~~s~~~~T~  181 (239)
                      |++||||.+..+ ...+..|++++.+|..++.. ....++++++||+++|++||||+..          ++.+|++..|+
T Consensus       490 Q~~dGsW~g~Wg-~~~~Y~T~~al~aL~~~G~~~~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~~S~~~~TA  568 (634)
T TIGR03463       490 QREDGSFPGSWG-VCFTYGTFHGVMGLRAAGASPDDMALQRAAAWLRSYQRADGGWGEVYESCLQARYVEGKQSQAVMTS  568 (634)
T ss_pred             cCCCCCccccCC-CCCcHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCccCccCccccccccCCCCCcHHHHH
Confidence            999999987643 34455688888888887763 4567899999999999999999753          34578999999


Q ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHhccccCCccCCCC--CCCCChhh
Q 026402          182 CCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRP--EKLPDVGL  227 (239)
Q Consensus       182 ~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~--~k~~D~c~  227 (239)
                      |||.+|..++..+...++++++||+++|.++|||...+  +-++-.||
T Consensus       569 ~Al~aL~~~g~~~~~~i~rgi~~L~~~Q~~dG~W~~~~~~G~f~~~~~  616 (634)
T TIGR03463       569 WALLALAEAGEGGHDAVQRGVAWLRSRQQEDGRWPREPINGVFFGTAM  616 (634)
T ss_pred             HHHHHHHHcCCcCCHHHHHHHHHHHHhCCCCCCCCCCceeeeeCccee
Confidence            99999999987666678999999999999999998765  44666564

This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.

>TIGR01507 hopene_cyclase squalene-hopene cyclase

Probab=99.94  E-value=3.4e-25  Score=206.01  Aligned_cols=212  Identities=19%  Similarity=0.163  Sum_probs=161.7

Q ss_pred             HHHHHHHHHHccc-------------CCCCcccccc--ccchHHHHHHHHHHHHhhCCCC----CcCHHHHHHHHHhccC
Q 026402            6 ADKHVKYIISVEK-------------KKDSFESVVM--EHLRLNGAYWGLTTLDILGKLD----AVDEEDVISWILKCQD   66 (239)
Q Consensus         6 ~~~~~~yl~~~q~-------------~dg~~~~~~~--~~~~~~~~y~al~~l~ll~~~~----~~~~~~~i~~l~~~q~   66 (239)
                      +.|+.+||++.|-             ++|||.+...  ..+++..|-.++.+|..++..+    ....+++++||+++||
T Consensus       338 l~kA~~~L~~~Qi~~~~~w~~~~~~~~~GGW~f~~~~~~~pd~ddTa~~L~AL~~~~~~~~~~~~~~i~ra~~wLl~~Qn  417 (635)
T TIGR01507       338 LVKAGEWLLDKQITVPGDWAVKRPNLEPGGWAFQFDNVYYPDVDDTAVVVWALNGLRLPDERRRRDAMTKAFRWIAGMQS  417 (635)
T ss_pred             HHHHHHHHHhhcccCCCCccccCCCCCCCccCCCCCCCCCCCchhHHHHHHHHHHcCCCccccchHHHHHHHHHHHHhcC
Confidence            5799999999872             3577765532  2478888999999998875321    2368899999999999


Q ss_pred             CCCCCCCCCC-------------------CCCchhHHHHHHHHHHhcCCC-CCCCHHHHHHHHHhccCCCCCcccCCCCC
Q 026402           67 ESGGFAGNIG-------------------HDPHVLYTLSAVQVLALFDKV-DILDADKVSNYIVGLQNEDGSFSGDIWGE  126 (239)
Q Consensus        67 ~dGgf~~~~~-------------------~~~~~~~T~~al~~L~~l~~~-~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~  126 (239)
                      +||||+.+..                   +.|.+..|..++.+|...+.. ....++++++||.+.|++||||.++++ .
T Consensus       418 ~dGgw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~~l~al~~~g~~~~~~~i~rav~~L~~~Q~~dG~W~g~wg-~  496 (635)
T TIGR01507       418 SNGGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTARVLECLGSFGYDDAWPVIERAVEYLKREQEPDGSWFGRWG-V  496 (635)
T ss_pred             CCCCEecccCCcchhHHhcCCccccccccCCCCccHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCCCCCCccCCC-C
Confidence            9999986532                   235667788999999876532 222478999999999999999966543 2


Q ss_pred             CCcchhHHHHhHHHhhcc-CChhcHHHHHHHHHhccCCCCCccCC----------CCCCCchhhHHHHHHHHHHhCCCCC
Q 026402          127 VDTRFSYIAICCLSILQR-LDKINVDKAVEYIVSCKNLDGGFGCT----------PGGESHSGQIFCCVGALAIAGALHH  195 (239)
Q Consensus       127 ~d~~~ty~al~~l~~l~~-~~~~~~~~~~~~l~~~Q~~dGGf~~~----------~~~~s~~~~T~~al~aL~~l~~~~~  195 (239)
                      .++..|..++.+|...+. .....++++++||+++|++||||++.          ..+++++..|.|||.+|..++..+.
T Consensus       497 ~~~Y~T~~al~aL~~~g~~~~~~~i~rAv~wL~~~Q~~DGGWge~~~sy~~~~~~g~g~s~~s~TA~AL~AL~~ag~~~~  576 (635)
T TIGR01507       497 NYLYGTGAVLSALKAVGIDTREPYIQKALAWLESHQNPDGGWGEDCRSYEDPAYAGKGASTASQTAWALIALIAAGRAES  576 (635)
T ss_pred             ccccHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCCCCCcccccccccCCCCCcHHHHHHHHHHHHHhCCCCc
Confidence            233334445555555443 23457899999999999999999864          2247899999999999999987666


Q ss_pred             CCHHHHHHHHHhccccCCccCCC
Q 026402          196 VDKDLLGWWLCERQVKSGGLNGR  218 (239)
Q Consensus       196 ~~~~~~~~~L~~~Q~~~GGf~~~  218 (239)
                      ..++++++||.++|+++|||.-.
T Consensus       577 ~~I~rav~~L~~~Q~~dG~W~e~  599 (635)
T TIGR01507       577 EAARRGVQYLVETQRPDGGWDEP  599 (635)
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCc
Confidence            67899999999999999999754

SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.

>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

Probab=99.92  E-value=2.7e-24  Score=201.23  Aligned_cols=213  Identities=23%  Similarity=0.267  Sum_probs=161.8

Q ss_pred             cHHHHHHHHHHccc--------------CCCCcccccc--ccchHHHHHHHHHHHHhhCCCC-------CcCHHHHHHHH
Q 026402            5 AADKHVKYIISVEK--------------KKDSFESVVM--EHLRLNGAYWGLTTLDILGKLD-------AVDEEDVISWI   61 (239)
Q Consensus         5 ~~~~~~~yl~~~q~--------------~dg~~~~~~~--~~~~~~~~y~al~~l~ll~~~~-------~~~~~~~i~~l   61 (239)
                      ..+++++||++.|.              ++|||.+...  ..+++..|-.++.+|..++..+       ...++++++||
T Consensus       330 ~l~ka~~wL~~~Q~~~~~gdw~~~~~~~~~GGW~fs~~~~~~pd~d~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wL  409 (634)
T cd02892         330 ALKKALDWLLESQILDNPGDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKALLRLQELPPFGEKVSRERLYDAVDWL  409 (634)
T ss_pred             HHHHHHHHHHHHHcCCCCCchhhhCCCCCCCCCCCCCCCCCCCCcCchHHHHHHHHHhhccCCcchhhHHHHHHHHHHHH
Confidence            35799999999995              3567664321  2345556888888888776532       12577899999


Q ss_pred             HhccCCCCCCCCCCC---------------------CCCchhHHHHHHHHHHhcCCCCCC-------CHHHHHHHHHhcc
Q 026402           62 LKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKVDIL-------DADKVSNYIVGLQ  113 (239)
Q Consensus        62 ~~~q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~~~~-------~~~~~~~~l~~~Q  113 (239)
                      +++|++||||+.+..                     ..+++..|.+++.+|..++.....       .++++++||.+.|
T Consensus       410 l~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r~~i~~~i~rAv~~L~~~Q  489 (634)
T cd02892         410 LGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGLFGKLYPGHRREIDPAIRRAVKYLLREQ  489 (634)
T ss_pred             HhccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHcc
Confidence            999999999985421                     135667899999999988653321       3789999999999


Q ss_pred             CCCCCcccCCCCCCCcchhHHHHhHHHhhccC--ChhcHHHHHHHHHhccCCCCCccCCC----------CCCCchhhHH
Q 026402          114 NEDGSFSGDIWGEVDTRFSYIAICCLSILQRL--DKINVDKAVEYIVSCKNLDGGFGCTP----------GGESHSGQIF  181 (239)
Q Consensus       114 ~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~--~~~~~~~~~~~l~~~Q~~dGGf~~~~----------~~~s~~~~T~  181 (239)
                      ++||||.++.+ ...+..|+.++.+|..++..  ....++++++||+++|++||||+..+          +.++++..|.
T Consensus       490 ~~DGsW~g~wg-~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~~~L~s~Q~~DGgWge~~~s~~~~~~~~~~~s~~~~TA  568 (634)
T cd02892         490 EPDGSWYGRWG-VCYIYGTWFALEALAAAGEDYENSPYIRKACDFLLSKQNPDGGWGESYLSYEDKSYAGGGRSTVVQTA  568 (634)
T ss_pred             CCCCCccccCC-CccHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHhcCCCCCCCCCccccccCcccCCCCCCcHHHHH
Confidence            99999976543 23334455677777777653  24578999999999999999998632          3468899999


Q ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHhccccCCccCCC
Q 026402          182 CCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGR  218 (239)
Q Consensus       182 ~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~GGf~~~  218 (239)
                      +||.+|..++..+...++++++||+++|.++|+|.-.
T Consensus       569 ~AllaLl~~g~~~~~~i~r~i~wL~~~Q~~~G~w~~~  605 (634)
T cd02892         569 WALLALMAAGEPDSEAVERGIKYLLNTQLPDGDWPQE  605 (634)
T ss_pred             HHHHHHHHcCCCChHHHHHHHHHHHHcCCCCCCCCCc
Confidence            9999998888765567899999999999999999763

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.

>PLN03012 Camelliol C synthase

Probab=99.92  E-value=2.2e-24  Score=200.94  Aligned_cols=218  Identities=19%  Similarity=0.217  Sum_probs=157.6

Q ss_pred             HHHHHHHHHHcccC---------------CCCcccccc--ccchHHHHHHHHHH---HHhhCCC---C---CcCHHHHHH
Q 026402            6 ADKHVKYIISVEKK---------------KDSFESVVM--EHLRLNGAYWGLTT---LDILGKL---D---AVDEEDVIS   59 (239)
Q Consensus         6 ~~~~~~yl~~~q~~---------------dg~~~~~~~--~~~~~~~~y~al~~---l~ll~~~---~---~~~~~~~i~   59 (239)
                      ..|+.+||++.|..               .|+|.....  ..++...|-=++.+   ++++...   .   .....++++
T Consensus       441 l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sD~TAe~Lka~lll~~~~~~~~~~~~~~~~l~~av~  520 (759)
T PLN03012        441 LRRGHDFIKNSQVGENPSGDFKNMYRHISKGAWTFSDRDHGWQASDCTAEGFKCCLLFSMIAPDIVGPKMDPEQLHDAVN  520 (759)
T ss_pred             HHHHHHHHHHHhccCCCCChhhhhCCCCCCCcccccCCCCCCCCCCccHHHHHHHHHHHhcccccccccccHHHHHHHHH
Confidence            56899999998863               255543321  22333345544443   4444321   1   125778999


Q ss_pred             HHHhccCCCCCCCCCCC---------------------CCCchhHHHHHHHHHHhcCCCC------CC--CHHHHHHHHH
Q 026402           60 WILKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKVD------IL--DADKVSNYIV  110 (239)
Q Consensus        60 ~l~~~q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~~------~~--~~~~~~~~l~  110 (239)
                      ||+++||+||||+.+..                     ..+....|..+|.+|.++....      .+  .++++++||+
T Consensus       521 wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~i~~~i~rAv~~L~  600 (759)
T PLN03012        521 ILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTEEINAFIKKAAEYIE  600 (759)
T ss_pred             HHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchhhhHHHHHHHHHHHH
Confidence            99999999999987653                     2455667888999988876421      12  3688999999


Q ss_pred             hccCCCCCcccCCCCCCCcchhH---HHHhHHHhhccC--ChhcHHHHHHHHHhccCCCCCccCCCC------------C
Q 026402          111 GLQNEDGSFSGDIWGEVDTRFSY---IAICCLSILQRL--DKINVDKAVEYIVSCKNLDGGFGCTPG------------G  173 (239)
Q Consensus       111 ~~Q~~dGgf~~~~~~~~d~~~ty---~al~~l~~l~~~--~~~~~~~~~~~l~~~Q~~dGGf~~~~~------------~  173 (239)
                      +.|++||||.++.+    ++++|   +++.+|...+..  ....++|+++||++.|++||||++...            .
T Consensus       601 ~~Q~~DGsW~G~Wg----v~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~~~~~  676 (759)
T PLN03012        601 NIQMLDGSWYGNWG----ICFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYIAQEGE  676 (759)
T ss_pred             HhcCCCCCCccccc----ccCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCCCCCCCCccccCCCCC
Confidence            99999999998765    35544   466666666652  236789999999999999999998642            3


Q ss_pred             CCchhhHHHHHHHHHHhCCCC--CCCHHHHHHHHHhccccCCccCCCC--CCCCChhh
Q 026402          174 ESHSGQIFCCVGALAIAGALH--HVDKDLLGWWLCERQVKSGGLNGRP--EKLPDVGL  227 (239)
Q Consensus       174 ~s~~~~T~~al~aL~~l~~~~--~~~~~~~~~~L~~~Q~~~GGf~~~~--~k~~D~c~  227 (239)
                      .|++..|+||+.+|...+..+  +..+.|+++||+++|.++|+|.-..  +.++-.||
T Consensus       677 ~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~dG~W~q~~~~G~F~~~~~  734 (759)
T PLN03012        677 ISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLENGDFPQQEATGAFLKNCL  734 (759)
T ss_pred             CCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccCCCCCCCceeeeeeccceE
Confidence            589999999999999998743  3468999999999999999987542  44555554

>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

Probab=99.92  E-value=4.4e-24  Score=186.67  Aligned_cols=228  Identities=17%  Similarity=0.162  Sum_probs=174.9

Q ss_pred             HHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC--CCcCHHHHHHHHHhcc--------------CCCC
Q 026402            6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQ--------------DESG   69 (239)
Q Consensus         6 ~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~--~~~~~~~~i~~l~~~q--------------~~dG   69 (239)
                      +++.++||.+.|++||+|....   +++..|.+++.+|...+..  ....++++++||.+.|              .++|
T Consensus         1 ~~~~~~~L~~~Q~~dG~W~~~~---~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~G   77 (348)
T cd02889           1 IRRALDFLLSLQAPDGHWPGEY---SQVWDTALALQALLEAGLAPEFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKG   77 (348)
T ss_pred             CchHHHHHHHhccCCCCccccC---CchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCC
Confidence            4789999999999999998554   7788899999999888863  2346899999999999              6899


Q ss_pred             CCCCCCC--CCCchhHHHHHHHHHHhcCCCC-------CCCHHHHHHHHHhccCCCCCcccCCC----------------
Q 026402           70 GFAGNIG--HDPHVLYTLSAVQVLALFDKVD-------ILDADKVSNYIVGLQNEDGSFSGDIW----------------  124 (239)
Q Consensus        70 gf~~~~~--~~~~~~~T~~al~~L~~l~~~~-------~~~~~~~~~~l~~~Q~~dGgf~~~~~----------------  124 (239)
                      ||+....  ..++...|..++.+|..++...       ...++++++||.++|++||+|.....                
T Consensus        78 gw~y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~  157 (348)
T cd02889          78 GWAFSTANQGYPDSDDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDGD  157 (348)
T ss_pred             cCcccCcCCCCCCCCChHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhcC
Confidence            9886432  2355668888888877665432       12368899999999999999974211                


Q ss_pred             ---CCCCcchhHHHHhHHHhhccCCh-------hcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCC
Q 026402          125 ---GEVDTRFSYIAICCLSILQRLDK-------INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALH  194 (239)
Q Consensus       125 ---~~~d~~~ty~al~~l~~l~~~~~-------~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~  194 (239)
                         ..+++..|..++.+|..++....       ..++++++||+++|++||||.... ..++.+.|++++.+|..++...
T Consensus       158 ~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~i~~a~~~L~~~q~~dG~w~~~~-~~~~~y~ta~a~~aL~~~g~~~  236 (348)
T cd02889         158 IMIDPPYVECTGSVLEALGLFGKLYPEHRREIDPAIRRAVKYLEREQEPDGSWYGRW-GVCFIYGTWFALEALAAAGEDE  236 (348)
T ss_pred             CccCCCCcchHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHhCCCCCCccccC-CCcchHHHHHHHHHHHHcCCCc
Confidence               12345557777888777775422       357899999999999999996433 2356778889999998888632


Q ss_pred             -CCCHHHHHHHHHhccccCCccCCC----------CCCCCChhhhhhhhccCCC
Q 026402          195 -HVDKDLLGWWLCERQVKSGGLNGR----------PEKLPDVGLLLLVGSFKLD  237 (239)
Q Consensus       195 -~~~~~~~~~~L~~~Q~~~GGf~~~----------~~k~~D~c~s~~~~~~l~~  237 (239)
                       ...++++++||+++|.++|||...          +...+|++.+.|++-+|+.
T Consensus       237 ~~~~~~~~~~~L~~~Q~~dG~w~~~~~~~~~~~~~~~~~~~~~~Ta~al~aL~~  290 (348)
T cd02889         237 NSPYVRKACDWLLSKQNPDGGWGESYESYEDPSYAGGGRSTVVQTAWALLALMA  290 (348)
T ss_pred             CcHHHHHHHHHHHHccCCCCCcCCcccccccccccCCCCCcHHHHHHHHHHHHh
Confidence             345789999999999999999863          3457899999999988764

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.

>PLN02993 lupeol synthase

Probab=99.92  E-value=3.9e-24  Score=199.58  Aligned_cols=221  Identities=18%  Similarity=0.204  Sum_probs=162.1

Q ss_pred             HHHHHHHHHHcccC---------------CCCcccccc--ccchHHHHHHHHH---HHHhhCCC---C---CcCHHHHHH
Q 026402            6 ADKHVKYIISVEKK---------------KDSFESVVM--EHLRLNGAYWGLT---TLDILGKL---D---AVDEEDVIS   59 (239)
Q Consensus         6 ~~~~~~yl~~~q~~---------------dg~~~~~~~--~~~~~~~~y~al~---~l~ll~~~---~---~~~~~~~i~   59 (239)
                      .+|+.+||++.|-.               .|||.+...  ..++...|-=++.   .|..+...   .   .....++++
T Consensus       441 l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sDdTAe~lka~l~l~~~~~~~~~~~~~~~~l~~av~  520 (763)
T PLN02993        441 LRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGWQVSDCTAEALKCCMLLSMMPADVVGQKIDPEQLYDSVN  520 (763)
T ss_pred             HHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCCCcCCchHHHHHHHHHHhhCccccccccchHHHHHHHHH
Confidence            56899999988862               366654422  2344444555554   44433311   1   124778999


Q ss_pred             HHHhccCCCCCCCCCCC---------------------CCCchhHHHHHHHHHHhcCCC-C-----C--CCHHHHHHHHH
Q 026402           60 WILKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKV-D-----I--LDADKVSNYIV  110 (239)
Q Consensus        60 ~l~~~q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~-~-----~--~~~~~~~~~l~  110 (239)
                      ||+++||+||||+.+..                     ..+.+..|..+|.+|..++.. .     .  ..++++++||+
T Consensus       521 wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~ei~~~i~rAv~yL~  600 (763)
T PLN02993        521 LLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDHRTKEIIKSIEKAVQFIE  600 (763)
T ss_pred             HHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHH
Confidence            99999999999998752                     256778999999999988642 1     1  13689999999


Q ss_pred             hccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCC--hhcHHHHHHHHHhccCCCCCccCCC------------CCCCc
Q 026402          111 GLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLD--KINVDKAVEYIVSCKNLDGGFGCTP------------GGESH  176 (239)
Q Consensus       111 ~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~--~~~~~~~~~~l~~~Q~~dGGf~~~~------------~~~s~  176 (239)
                      +.|++||||.++.+ ...+..|++++.+|...+...  ...++|+++||+++|++||||++..            +..|+
T Consensus       601 ~~Q~~DGSW~G~Wg-v~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~~DGGWGEs~~S~~~~~y~~~~~~~St  679 (763)
T PLN02993        601 SKQTPDGSWYGNWG-ICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQRDDGGWGESYLSCPEQRYIPLEGNRSN  679 (763)
T ss_pred             HhcCCCCCcccccc-cccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCCCCcCcCcCcCCCcccccCCCCCCc
Confidence            99999999998643 334445667788887777642  2578999999999999999998752            23588


Q ss_pred             hhhHHHHHHHHHHhCCCCC--CCHHHHHHHHHhccccCCccCCC--CCCCCChhh
Q 026402          177 SGQIFCCVGALAIAGALHH--VDKDLLGWWLCERQVKSGGLNGR--PEKLPDVGL  227 (239)
Q Consensus       177 ~~~T~~al~aL~~l~~~~~--~~~~~~~~~L~~~Q~~~GGf~~~--~~k~~D~c~  227 (239)
                      ++.|.||+.+|...|..+.  ..++|+++||.++|.++|+|--.  .+-++-.||
T Consensus       680 ~~qTAwAllaL~~aG~~~~~~~~l~Rgi~~L~~~Q~~~G~W~q~~~~G~F~~~~~  734 (763)
T PLN02993        680 LVQTAWAMMGLIHAGQAERDLIPLHRAAKLIITSQLENGDFPQQEILGAFMNTCM  734 (763)
T ss_pred             hhhHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCCcceeceECccce
Confidence            9999999999999886432  35899999999999999998754  344666666

>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

Probab=99.91  E-value=2.1e-23  Score=182.40  Aligned_cols=212  Identities=24%  Similarity=0.259  Sum_probs=157.9

Q ss_pred             cHHHHHHHHHHcc--------------cCCCCccccccc--cchHHHHHHHHHHHHhhCCCC-------CcCHHHHHHHH
Q 026402            5 AADKHVKYIISVE--------------KKKDSFESVVME--HLRLNGAYWGLTTLDILGKLD-------AVDEEDVISWI   61 (239)
Q Consensus         5 ~~~~~~~yl~~~q--------------~~dg~~~~~~~~--~~~~~~~y~al~~l~ll~~~~-------~~~~~~~i~~l   61 (239)
                      ..+|+++||.+.|              .++|+|......  .++...|-+++.+|..++...       ...++++++||
T Consensus        47 ~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Ggw~y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L  126 (348)
T cd02889          47 ALKKALEWLLKSQIRDNPDDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWL  126 (348)
T ss_pred             HHHHHHHHHHhcCCCCCCCchhhcCCCCCCCcCcccCcCCCCCCCCChHHHHHHHHHhhccCcccchhhHHHHHHHHHHH
Confidence            3579999999999              688888754221  233334666666666665431       22578899999


Q ss_pred             HhccCCCCCCCCCCC-------------------CCCchhHHHHHHHHHHhcCCCCC-------CCHHHHHHHHHhccCC
Q 026402           62 LKCQDESGGFAGNIG-------------------HDPHVLYTLSAVQVLALFDKVDI-------LDADKVSNYIVGLQNE  115 (239)
Q Consensus        62 ~~~q~~dGgf~~~~~-------------------~~~~~~~T~~al~~L~~l~~~~~-------~~~~~~~~~l~~~Q~~  115 (239)
                      +++|++||||..+..                   ..+++..|..++.+|..++....       ..++++++||.+.|++
T Consensus       127 ~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~i~~a~~~L~~~q~~  206 (348)
T cd02889         127 LSMQNSNGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVECTGSVLEALGLFGKLYPEHRREIDPAIRRAVKYLEREQEP  206 (348)
T ss_pred             HHhccCCCCEeeecCCccHHHHhcCchhhcCCccCCCCcchHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHhCCC
Confidence            999999999985422                   23567789999999888765322       1367899999999999


Q ss_pred             CCCcccCCCCCCCcchhHHHHhHHHhhccC-ChhcHHHHHHHHHhccCCCCCccCC----------CCCCCchhhHHHHH
Q 026402          116 DGSFSGDIWGEVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCT----------PGGESHSGQIFCCV  184 (239)
Q Consensus       116 dGgf~~~~~~~~d~~~ty~al~~l~~l~~~-~~~~~~~~~~~l~~~Q~~dGGf~~~----------~~~~s~~~~T~~al  184 (239)
                      ||+|.+... ......|+.++.+|..++.. ....++++++||+++|++||||+..          +...++...|.++|
T Consensus       207 dG~w~~~~~-~~~~y~ta~a~~aL~~~g~~~~~~~~~~~~~~L~~~Q~~dG~w~~~~~~~~~~~~~~~~~~~~~~Ta~al  285 (348)
T cd02889         207 DGSWYGRWG-VCFIYGTWFALEALAAAGEDENSPYVRKACDWLLSKQNPDGGWGESYESYEDPSYAGGGRSTVVQTAWAL  285 (348)
T ss_pred             CCCccccCC-CcchHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCcCCcccccccccccCCCCCcHHHHHHHH
Confidence            999975432 22333455566666666652 3457899999999999999999863          23467889999999


Q ss_pred             HHHHHhCCCCCCCHHHHHHHHHhccccCCccCC
Q 026402          185 GALAIAGALHHVDKDLLGWWLCERQVKSGGLNG  217 (239)
Q Consensus       185 ~aL~~l~~~~~~~~~~~~~~L~~~Q~~~GGf~~  217 (239)
                      .+|...+..+...++++++||.++|+++|||..
T Consensus       286 ~aL~~~g~~~~~~v~~a~~wL~~~Q~~dG~f~~  318 (348)
T cd02889         286 LALMAAGEPDSEAVKRGVKYLLNTQQEDGDWPQ  318 (348)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHhcCCCCCcCC
Confidence            999888765556689999999999999999986

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.

>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases

Probab=99.91  E-value=2.5e-23  Score=193.45  Aligned_cols=221  Identities=21%  Similarity=0.187  Sum_probs=159.0

Q ss_pred             HHHHHHHHHHcccCC---------------CCcccccc--ccchHHHHHHHHHHHHhhCCC-C---CcCHHHHHHHHHhc
Q 026402            6 ADKHVKYIISVEKKK---------------DSFESVVM--EHLRLNGAYWGLTTLDILGKL-D---AVDEEDVISWILKC   64 (239)
Q Consensus         6 ~~~~~~yl~~~q~~d---------------g~~~~~~~--~~~~~~~~y~al~~l~ll~~~-~---~~~~~~~i~~l~~~   64 (239)
                      +.|+.+||++.|..+               |+|.+...  ..+++..|-.++.++.++... .   ....+++++||+++
T Consensus       321 i~ka~~wL~~~Q~~~~~~g~~~~~~~~~~pGgW~fs~~~~~~PdvdDta~~~la~~l~~~~~~~~~~~~l~~a~~~Ll~~  400 (621)
T TIGR01787       321 LVKAHEWLLLSQIPDNPPGDWKVYRHNLKPGGWAFSFLNCGYPDVDDTAVVALKAVLLLQEDEHVKRDRLRDAVNWILGM  400 (621)
T ss_pred             HHHHHHHHHHHhCCCCCCCchhhhCCCCCCCcccCccCCCCCCCchhHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHH
Confidence            579999999999865               66653321  224565566665555444432 1   12467899999999


Q ss_pred             cCCCCCCCCCCC---------------------CCCchhHHHHHHHHHHhcCCC-C--CCCHHHHHHHHHhccCCCCCcc
Q 026402           65 QDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKV-D--ILDADKVSNYIVGLQNEDGSFS  120 (239)
Q Consensus        65 q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~-~--~~~~~~~~~~l~~~Q~~dGgf~  120 (239)
                      ||+||||+.++.                     ..+.+..|..++.+|...+.. +  ...++++++||.+.|++||+|.
T Consensus       401 Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~~r~~~~~~~i~rAl~~L~~~Q~~DGsw~  480 (621)
T TIGR01787       401 QSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFGHRADEIRNVLERALEYLRREQRADGSWF  480 (621)
T ss_pred             cCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhcCccHhHHHHHHHHHHHHHHhcCCCCCCc
Confidence            999999986531                     123446899999999877531 1  1247899999999999999998


Q ss_pred             cCCCCCCCcchhHHHHhHHHhhccCC--hhcHHHHHHHHHhccCCCCCccCCC----------CCCCchhhHHHHHHHHH
Q 026402          121 GDIWGEVDTRFSYIAICCLSILQRLD--KINVDKAVEYIVSCKNLDGGFGCTP----------GGESHSGQIFCCVGALA  188 (239)
Q Consensus       121 ~~~~~~~d~~~ty~al~~l~~l~~~~--~~~~~~~~~~l~~~Q~~dGGf~~~~----------~~~s~~~~T~~al~aL~  188 (239)
                      ++.+ ...+..|..++.+|..++...  ...++++++||+++|++||||+...          ..+|++..|.|||.+|.
T Consensus       481 g~wg-~~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~DGGWge~~~s~~~~~y~~~~~S~~s~Ta~AL~AL~  559 (621)
T TIGR01787       481 GRWG-VNYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMPDGGWGEDCFSYEDPSYVGSGGSTPSQTGWALMALI  559 (621)
T ss_pred             ccCC-CCCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCCCCCCCcCCccccccccCCCCCCCHHHHHHHHHHHH
Confidence            7543 223333555666676666532  2568999999999999999998642          23689999999999998


Q ss_pred             HhCCCCCCCHHHHHHHHHhccccCCccCCCC--CC-CCChhh
Q 026402          189 IAGALHHVDKDLLGWWLCERQVKSGGLNGRP--EK-LPDVGL  227 (239)
Q Consensus       189 ~l~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~--~k-~~D~c~  227 (239)
                      .++..+...++++++||.++|.++|||...+  +. .|-.||
T Consensus       560 ~ag~~~~~ai~rgv~~L~~~Q~~dG~w~~~~~~g~~~p~~~~  601 (621)
T TIGR01787       560 AAGEADSEAIERGVKYLLETQRPDGDWPQEYITGVGFPKNFY  601 (621)
T ss_pred             HcCccchHHHHHHHHHHHHhCCCCCCCCCccccCCCCcccce
Confidence            8886555568999999999999999997643  33 335565

This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.

>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C

Probab=99.87  E-value=2e-22  Score=148.34  Aligned_cols=109  Identities=34%  Similarity=0.618  Sum_probs=91.5

Q ss_pred             HHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCCCCCCHHHH--HHHHHhccCCCCCcccCCC-CCCCcchhHH
Q 026402           58 ISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKV--SNYIVGLQNEDGSFSGDIW-GEVDTRFSYI  134 (239)
Q Consensus        58 i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~--~~~l~~~Q~~dGgf~~~~~-~~~d~~~ty~  134 (239)
                      |+||+++|++||||+.. +..+++..|+.|+.+|..++...  +++++  ++||.++|++||||...+. .++|+..|++
T Consensus         1 v~~L~~~Q~~dGgw~~~-~~~~~~~~T~~al~aL~~~g~~~--~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~t~~   77 (113)
T PF13249_consen    1 VDWLLSRQNPDGGWGGF-GGPSDVWDTAFALLALAALGEEP--DRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYTTYV   77 (113)
T ss_dssp             HHHHHHHB-TTSSBBSS-TS-BEHHHHHHHHHHHHHHTSHH--CHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHHHHH
T ss_pred             CHhhHHHcCCCCCCcCC-CCCCCHHHHHHHHHHHHHhCCcc--cHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHHHHH
Confidence            68999999999999988 77899999999999999987643  47888  9999999999999999884 4678999999


Q ss_pred             HHhHHHhhccCCh-hcHHHHHHHHHhccCCCCCccC
Q 026402          135 AICCLSILQRLDK-INVDKAVEYIVSCKNLDGGFGC  169 (239)
Q Consensus       135 al~~l~~l~~~~~-~~~~~~~~~l~~~Q~~dGGf~~  169 (239)
                      ++++|.+++.... ..++++++||+++|++||||++
T Consensus        78 ~l~~l~~~~~~~~~~~~~~a~~~l~~~Q~~dGg~~y  113 (113)
T PF13249_consen   78 ALAALELLGRPDDEEAVRKAVDWLLSCQNPDGGWGY  113 (113)
T ss_dssp             HHHHHHHHT-GGCHTTHCCHHHHHHHTB-TTSSB-S
T ss_pred             HHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCCc
Confidence            9999999987543 6789999999999999999975

...

>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase

Probab=99.86  E-value=2.4e-20  Score=173.86  Aligned_cols=229  Identities=15%  Similarity=0.110  Sum_probs=162.2

Q ss_pred             HHHHHHHHHHccc--CCCCccccccccchHHHHHHHHHHHHhhCCCC-C--cCHHHHHHHHHhccC--------------
Q 026402            6 ADKHVKYIISVEK--KKDSFESVVMEHLRLNGAYWGLTTLDILGKLD-A--VDEEDVISWILKCQD--------------   66 (239)
Q Consensus         6 ~~~~~~yl~~~q~--~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~-~--~~~~~~i~~l~~~q~--------------   66 (239)
                      ..+|+++|.+..-  ++|+...... .+..|.|-+++.+|.-.+..+ +  ...+++.+||++.|.              
T Consensus       278 ~~k~l~~l~~~~~~~~~~g~~~q~~-~s~~WDTala~~AL~e~g~~~~~~~~~l~kA~~wL~~~Q~~~~~gd~~~~~~~~  356 (634)
T TIGR03463       278 VAAHLEGLEDYRYEDDDRGLRYNGY-NSSEWDTAFAVQALAATPETAGRHRRMLERAARFLEANQMLEDTAEPQRFFRDP  356 (634)
T ss_pred             HHHHHHHHHhhEEEcCCCCEEEeeC-CCCchhHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHhcCCcCCCCchhcCCCC
Confidence            5789999988774  4433222221 234488899998887666422 1  246889999999994              


Q ss_pred             CCCCCCCCC--CCCCchhHHHHHHHHHHhcCCC--------CCCCHHHHHHHHHhccCCCCCcccCCC------------
Q 026402           67 ESGGFAGNI--GHDPHVLYTLSAVQVLALFDKV--------DILDADKVSNYIVGLQNEDGSFSGDIW------------  124 (239)
Q Consensus        67 ~dGgf~~~~--~~~~~~~~T~~al~~L~~l~~~--------~~~~~~~~~~~l~~~Q~~dGgf~~~~~------------  124 (239)
                      +.|||+...  ...++...|..+|.+|..+...        ....++++++||.++|++||||+....            
T Consensus       357 ~~GGW~f~~~~~~~pdsD~Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~  436 (634)
T TIGR03463       357 AKGGWCFSDGDHGWPVSDCTAEALSASLVLEPLGLNPEERVPQARLQDAVEFILSRQNEDGGFGTYERQRGPRVLELLNP  436 (634)
T ss_pred             CCCccccccCCCCCCccccHHHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCCh
Confidence            579988774  4567788898888887664321        112357899999999999999983210            


Q ss_pred             ---------CCCCcchhHHHHhHHHhhccCC--------hhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHH
Q 026402          125 ---------GEVDTRFSYIAICCLSILQRLD--------KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGAL  187 (239)
Q Consensus       125 ---------~~~d~~~ty~al~~l~~l~~~~--------~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL  187 (239)
                               ..+.+--|-.++.+|..++...        ...++++++||++.|++||||....+ ....+.|++++.+|
T Consensus       437 ~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~Q~~dGsW~g~Wg-~~~~Y~T~~al~aL  515 (634)
T TIGR03463       437 SEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSRQREDGSFPGSWG-VCFTYGTFHGVMGL  515 (634)
T ss_pred             HHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHhcCCCCCccccCC-CCCcHHHHHHHHHH
Confidence                     0112233444555555554322        12478999999999999999976544 35667899999999


Q ss_pred             HHhCCC-CCCCHHHHHHHHHhccccCCccCCC----------CCCCCChhhhhhhhccCC
Q 026402          188 AIAGAL-HHVDKDLLGWWLCERQVKSGGLNGR----------PEKLPDVGLLLLVGSFKL  236 (239)
Q Consensus       188 ~~l~~~-~~~~~~~~~~~L~~~Q~~~GGf~~~----------~~k~~D~c~s~~~~~~l~  236 (239)
                      ..++.. +...++++++||+++|+++|||+..          ++..+....|.|++.+|.
T Consensus       516 ~~~G~~~~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~~S~~~~TA~Al~aL~  575 (634)
T TIGR03463       516 RAAGASPDDMALQRAAAWLRSYQRADGGWGEVYESCLQARYVEGKQSQAVMTSWALLALA  575 (634)
T ss_pred             HHcCCCcCcHHHHHHHHHHHHccCCCCCccCccCccccccccCCCCCcHHHHHHHHHHHH
Confidence            988863 3455899999999999999999763          334677888999988874

This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.

>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold

Probab=99.84  E-value=1.1e-19  Score=170.16  Aligned_cols=229  Identities=16%  Similarity=0.127  Sum_probs=167.9

Q ss_pred             HHHHHHHHHHcc--cCCCCccccccccchHHHHHHHHHHHHhhCCCC--CcCHHHHHHHHHhccC--------------C
Q 026402            6 ADKHVKYIISVE--KKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD--AVDEEDVISWILKCQD--------------E   67 (239)
Q Consensus         6 ~~~~~~yl~~~q--~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~--~~~~~~~i~~l~~~q~--------------~   67 (239)
                      ..+|+++|.+..  .+||++.. ....+.+|.|-+++.+|.-.|..+  ....+++++||++.|.              +
T Consensus       280 ~~~~l~~l~~~~~~~~~g~~~~-~~~~s~~wDTala~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~gdw~~~~~~~~  358 (634)
T cd02892         280 FKRHLERIDDFLWLGPEGMKMC-QTNGSQVWDTALAVQALLEAGLAPEFDPALKKALDWLLESQILDNPGDWKVKYRHLR  358 (634)
T ss_pred             HHHHHHHHHhcEEEecCCcEEE-cCCCCchHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHHcCCCCCchhhhCCCCC
Confidence            468888888866  46776533 223467899999999997777542  2357899999999995              4


Q ss_pred             CCCCCCC--CCCCCchhHHHHHHHHHHhcCCCC----CC---CHHHHHHHHHhccCCCCCcccC-CCC------------
Q 026402           68 SGGFAGN--IGHDPHVLYTLSAVQVLALFDKVD----IL---DADKVSNYIVGLQNEDGSFSGD-IWG------------  125 (239)
Q Consensus        68 dGgf~~~--~~~~~~~~~T~~al~~L~~l~~~~----~~---~~~~~~~~l~~~Q~~dGgf~~~-~~~------------  125 (239)
                      .|||+..  +...|++..|..++.+|..+....    .+   .++++++||.++|++||||... +..            
T Consensus       359 ~GGW~fs~~~~~~pd~d~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e  438 (634)
T cd02892         359 KGGWAFSTANQGYPDSDDTAEALKALLRLQELPPFGEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFE  438 (634)
T ss_pred             CCCCCCCCCCCCCCCcCchHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchh
Confidence            6777754  234577788988888887776432    12   3678999999999999999742 110            


Q ss_pred             --------CCCcchhHHHHhHHHhhccCCh-------hcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHh
Q 026402          126 --------EVDTRFSYIAICCLSILQRLDK-------INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIA  190 (239)
Q Consensus       126 --------~~d~~~ty~al~~l~~l~~~~~-------~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l  190 (239)
                              .+.+..|..++.+|..++...+       ..++++++||+++|++||||.... .....+.|++++.+|..+
T Consensus       439 ~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r~~i~~~i~rAv~~L~~~Q~~DGsW~g~w-g~~~~Y~T~~al~AL~~~  517 (634)
T cd02892         439 DFGDIMIDPPYVECTGSVLEALGLFGKLYPGHRREIDPAIRRAVKYLLREQEPDGSWYGRW-GVCYIYGTWFALEALAAA  517 (634)
T ss_pred             hhcccccCCCCcchHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHccCCCCCccccC-CCccHHHHHHHHHHHHHh
Confidence                    1233457778888887765432       357899999999999999996543 346677899999999998


Q ss_pred             CCC--CCCCHHHHHHHHHhccccCCccCCCC----------CCCCChhhhhhhhccCC
Q 026402          191 GAL--HHVDKDLLGWWLCERQVKSGGLNGRP----------EKLPDVGLLLLVGSFKL  236 (239)
Q Consensus       191 ~~~--~~~~~~~~~~~L~~~Q~~~GGf~~~~----------~k~~D~c~s~~~~~~l~  236 (239)
                      +..  ....++++++||+++|+++|||...+          ...+++..|.|++-+|+
T Consensus       518 G~~~~~~~~i~~a~~~L~s~Q~~DGgWge~~~s~~~~~~~~~~~s~~~~TA~AllaLl  575 (634)
T cd02892         518 GEDYENSPYIRKACDFLLSKQNPDGGWGESYLSYEDKSYAGGGRSTVVQTAWALLALM  575 (634)
T ss_pred             CCcccCcHHHHHHHHHHHhcCCCCCCCCCccccccCcccCCCCCCcHHHHHHHHHHHH
Confidence            864  23467999999999999999997532          23566788888877764

Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.

>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C

Probab=99.84  E-value=4.9e-21  Score=140.93  Aligned_cols=108  Identities=29%  Similarity=0.450  Sum_probs=90.6

Q ss_pred             HHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHH--HHHHHhccCCCCCccCCC-CCCCchhhHHH
Q 026402          106 SNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKA--VEYIVSCKNLDGGFGCTP-GGESHSGQIFC  182 (239)
Q Consensus       106 ~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~--~~~l~~~Q~~dGGf~~~~-~~~s~~~~T~~  182 (239)
                      ++||.++|++||||... ..++++..|+.++.+|..++...  +.+++  ++||.++|++||||+..+ +.+++..+|++
T Consensus         1 v~~L~~~Q~~dGgw~~~-~~~~~~~~T~~al~aL~~~g~~~--~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~t~~   77 (113)
T PF13249_consen    1 VDWLLSRQNPDGGWGGF-GGPSDVWDTAFALLALAALGEEP--DRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYTTYV   77 (113)
T ss_dssp             HHHHHHHB-TTSSBBSS-TS-BEHHHHHHHHHHHHHHTSHH--CHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHHHHH
T ss_pred             CHhhHHHcCCCCCCcCC-CCCCCHHHHHHHHHHHHHhCCcc--cHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHHHHH
Confidence            68999999999999987 66788999999999999988744  47788  999999999999999998 46789999999


Q ss_pred             HHHHHHHhCCCCC-CCHHHHHHHHHhccccCCccC
Q 026402          183 CVGALAIAGALHH-VDKDLLGWWLCERQVKSGGLN  216 (239)
Q Consensus       183 al~aL~~l~~~~~-~~~~~~~~~L~~~Q~~~GGf~  216 (239)
                      ++++|.+++..+. ..++++++||+++|+++|||+
T Consensus        78 ~l~~l~~~~~~~~~~~~~~a~~~l~~~Q~~dGg~~  112 (113)
T PF13249_consen   78 ALAALELLGRPDDEEAVRKAVDWLLSCQNPDGGWG  112 (113)
T ss_dssp             HHHHHHHHT-GGCHTTHCCHHHHHHHTB-TTSSB-
T ss_pred             HHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCC
Confidence            9999999987543 668999999999999999997

...

>TIGR01507 hopene_cyclase squalene-hopene cyclase

Probab=99.84  E-value=2.9e-19  Score=166.48  Aligned_cols=229  Identities=17%  Similarity=0.066  Sum_probs=164.0

Q ss_pred             HHHHHHHHHHccc-CCCCccccccccchHHHHHHHHHHHHhhCCCC-CcCHHHHHHHHHhccC-------------CCCC
Q 026402            6 ADKHVKYIISVEK-KKDSFESVVMEHLRLNGAYWGLTTLDILGKLD-AVDEEDVISWILKCQD-------------ESGG   70 (239)
Q Consensus         6 ~~~~~~yl~~~q~-~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~-~~~~~~~i~~l~~~q~-------------~dGg   70 (239)
                      +.+|+++|++..- .+|++..... .+.+|.|.+++.+|...|... ....+++.+||+++|-             +.||
T Consensus       289 ~~~~l~~l~~~~~~~~~g~~~~~~-~s~vWDTa~ai~AL~~ag~~~~~p~l~kA~~~L~~~Qi~~~~~w~~~~~~~~~GG  367 (635)
T TIGR01507       289 IKLGWEGIDLYGVELDDSWMFQAC-VSPVWDTALAVLALREAGLPADHDALVKAGEWLLDKQITVPGDWAVKRPNLEPGG  367 (635)
T ss_pred             HHHHHHHHHHheEecCCceEecCC-CCcHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhcccCCCCccccCCCCCCCc
Confidence            5678999877554 4465543332 468899999999998888532 2357899999999973             3688


Q ss_pred             CCCC--CCCCCchhHHHHHHHHHHhcCCCC----CCCHHHHHHHHHhccCCCCCcccCC------------CC-------
Q 026402           71 FAGN--IGHDPHVLYTLSAVQVLALFDKVD----ILDADKVSNYIVGLQNEDGSFSGDI------------WG-------  125 (239)
Q Consensus        71 f~~~--~~~~~~~~~T~~al~~L~~l~~~~----~~~~~~~~~~l~~~Q~~dGgf~~~~------------~~-------  125 (239)
                      |+..  +...|++..|..++.+|..++..+    ...++++++||.++|++||||....            .+       
T Consensus       368 W~f~~~~~~~pd~ddTa~~L~AL~~~~~~~~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d~~~~~D  447 (635)
T TIGR01507       368 WAFQFDNVYYPDVDDTAVVVWALNGLRLPDERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCDFGAVTD  447 (635)
T ss_pred             cCCCCCCCCCCCchhHHHHHHHHHHcCCCccccchHHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCCccccccccC
Confidence            8876  334689999999999998764211    1247899999999999999996411            10       


Q ss_pred             CCCcchhHHHHhHHHhhcc-CChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCC-CCCCHHHHHH
Q 026402          126 EVDTRFSYIAICCLSILQR-LDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGAL-HHVDKDLLGW  203 (239)
Q Consensus       126 ~~d~~~ty~al~~l~~l~~-~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~-~~~~~~~~~~  203 (239)
                      .+++--|-.++.+|...+. .....++++++||++.|++||||-...+ ..+.+.|..++.+|+..+.. ....++++++
T Consensus       448 ~~~~d~Ta~~l~al~~~g~~~~~~~i~rav~~L~~~Q~~dG~W~g~wg-~~~~Y~T~~al~aL~~~g~~~~~~~i~rAv~  526 (635)
T TIGR01507       448 PPTADVTARVLECLGSFGYDDAWPVIERAVEYLKREQEPDGSWFGRWG-VNYLYGTGAVLSALKAVGIDTREPYIQKALA  526 (635)
T ss_pred             CCCccHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCCCCCCccCCC-CccccHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence            1222224445555554443 2245689999999999999999844433 45677888899999887752 2345899999


Q ss_pred             HHHhccccCCccCCC----------CCCCCChhhhhhhhccCC
Q 026402          204 WLCERQVKSGGLNGR----------PEKLPDVGLLLLVGSFKL  236 (239)
Q Consensus       204 ~L~~~Q~~~GGf~~~----------~~k~~D~c~s~~~~~~l~  236 (239)
                      ||+++|+++|||+..          +....|+--|.|++-+|.
T Consensus       527 wL~~~Q~~DGGWge~~~sy~~~~~~g~g~s~~s~TA~AL~AL~  569 (635)
T TIGR01507       527 WLESHQNPDGGWGEDCRSYEDPAYAGKGASTASQTAWALIALI  569 (635)
T ss_pred             HHHHhcCCCCCCCCCCcccccccccCCCCCcHHHHHHHHHHHH
Confidence            999999999999843          112578888999988774

SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.

>COG1689 Uncharacterized protein conserved in archaea [Function unknown]

Probab=99.83  E-value=8e-20  Score=144.24  Aligned_cols=221  Identities=14%  Similarity=0.151  Sum_probs=165.3

Q ss_pred             cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHh-ccCCCCCCCCC-------
Q 026402            3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK-CQDESGGFAGN-------   74 (239)
Q Consensus         3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~-~q~~dGgf~~~-------   74 (239)
                      .+|.++.+.||.+.|+.||||+....-+..+..||||+.++.+||.+++ .++++++||.+ +|..-+|+...       
T Consensus         5 ~i~l~rvi~fi~~RrhedGGy~f~~~Lpdti~~TyYAi~i~s~lg~evP-r~EktiefL~d~~qt~~~~~a~~~~~l~~l   83 (274)
T COG1689           5 YINLNRVIEFIEKRRHEDGGYCFVSQLPDTINDTYYAIKIYSLLGHEVP-RKEKTIEFLYDQMQTAGVGVAMAIEFLRIL   83 (274)
T ss_pred             hhhHHHHHHHHHHhhcCCCCeEEeccCcchhhhhhhhhhhhhhcCCcCc-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence            5789999999999999999999776545557889999999999998765 78999999988 34443343310       


Q ss_pred             ---------------------------------CCCCCchhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCccc
Q 026402           75 ---------------------------------IGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSG  121 (239)
Q Consensus        75 ---------------------------------~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~  121 (239)
                                                       .++..-+..||+.+.+|.+.+..   ..+...+|+.+-|+++|++.+
T Consensus        84 g~~d~~r~~~~l~~~~~~~~e~Kf~~~lggs~~f~t~~~Le~ty~~~~~l~~~n~~---~~eE~k~~v~~~~re~~~g~~  160 (274)
T COG1689          84 GAKDLARNKMLLLFLKYNPLEEKFAVGLGGSEEFGTATPLEATYWMMSALNMVNYE---YLEEMKEKVIEFVREFGIGDA  160 (274)
T ss_pred             cccccchhhHHHHHhhcCchhHHHhhhcCceeecCCCchHHHHHHHHHHHHHhCcC---chHHHHHHHHHHhhhhccccc
Confidence                                             01122356888888888877631   246788899999999877765


Q ss_pred             CCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhccCCCCCccCCCCC-CCchhhHHHHHHHHHHhCCCCCCCHHH
Q 026402          122 DIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGG-ESHSGQIFCCVGALAIAGALHHVDKDL  200 (239)
Q Consensus       122 ~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~-~s~~~~T~~al~aL~~l~~~~~~~~~~  200 (239)
                      .--.-+.+..||.|+-+|...     ...+....|=..|- .+|||...|+. +|-...||+|+..|.+|++.  .-+.+
T Consensus       161 YGv~~pnt~~t~~aly~l~~k-----~~~~~v~~Fe~~c~-~~Ggf~~~P~syPPYiE~t~ya~r~lelL~~k--~~i~~  232 (274)
T COG1689         161 YGVTHPNTTMTYQALYTLGSK-----GPKEEVRHFELCCG-DWGGFTEVPNSYPPYIEPTFYALRGLELLGGK--YCISD  232 (274)
T ss_pred             cccCCcchHHHHHHHHhhccc-----cchHHHHhHHhccc-cCCCcccCCCCCCCccchHHHHHhHHHHHccC--cCchH
Confidence            433345667777665544432     24566677776665 48999999986 67788999999999999975  44678


Q ss_pred             HHHHHHhccccCCccCCCC-CCCCChhhhhhhhccC
Q 026402          201 LGWWLCERQVKSGGLNGRP-EKLPDVGLLLLVGSFK  235 (239)
Q Consensus       201 ~~~~L~~~Q~~~GGf~~~~-~k~~D~c~s~~~~~~l  235 (239)
                      .++|+.+.|+++|||+... .-+.-.-+||-.+++|
T Consensus       233 ~~rFI~slqN~nGGFRRS~~~GISt~e~tYrAl~~L  268 (274)
T COG1689         233 HIRFIRSLQNQNGGFRRSYELGISTFENTYRALASL  268 (274)
T ss_pred             HHHHHHHhhcCCCCeeeeEeccccchHHHHHHHHHH
Confidence            9999999999999999875 4466667777766655

>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases

Probab=99.81  E-value=1.4e-18  Score=161.79  Aligned_cols=228  Identities=18%  Similarity=0.140  Sum_probs=160.7

Q ss_pred             HHHHHHHHHHc--ccCCCCccccccccchHHHHHHHHHHHHhhCC--CC--CcCHHHHHHHHHhccCCC-----------
Q 026402            6 ADKHVKYIISV--EKKKDSFESVVMEHLRLNGAYWGLTTLDILGK--LD--AVDEEDVISWILKCQDES-----------   68 (239)
Q Consensus         6 ~~~~~~yl~~~--q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~--~~--~~~~~~~i~~l~~~q~~d-----------   68 (239)
                      ..+|++.|++.  ..+||.+...  -.+.+|.|-+++.+|.-.|.  .+  ....+++++||++.|..+           
T Consensus       269 ~~~~l~~l~~~~~~~~dg~~~q~--~~s~vWDTalai~AL~~ag~~~~~~~~~~i~ka~~wL~~~Q~~~~~~g~~~~~~~  346 (621)
T TIGR01787       269 FQKHLQRIDDYLWLQLDGMKMQG--TGSQVWDTAFAIQALRESGDHRLPEFHPALVKAHEWLLLSQIPDNPPGDWKVYRH  346 (621)
T ss_pred             HHHHHHHHhhcEEEeCCccEEec--CCCcHHHHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhCCCCCCCchhhhCC
Confidence            46788888776  4577655311  14678999999999976663  22  235789999999999866           


Q ss_pred             ----CCCCCCC--CCCCchhHHHHHHHHHHhcCC-CCC---CCHHHHHHHHHhccCCCCCcccC-------------C--
Q 026402           69 ----GGFAGNI--GHDPHVLYTLSAVQVLALFDK-VDI---LDADKVSNYIVGLQNEDGSFSGD-------------I--  123 (239)
Q Consensus        69 ----Ggf~~~~--~~~~~~~~T~~al~~L~~l~~-~~~---~~~~~~~~~l~~~Q~~dGgf~~~-------------~--  123 (239)
                          |||+...  ...|++..|..++.++.++.. ...   ..++++++||.++|++||||...             |  
T Consensus       347 ~~~pGgW~fs~~~~~~PdvdDta~~~la~~l~~~~~~~~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e  426 (621)
T TIGR01787       347 NLKPGGWAFSFLNCGYPDVDDTAVVALKAVLLLQEDEHVKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSE  426 (621)
T ss_pred             CCCCCcccCccCCCCCCCchhHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchh
Confidence                7776542  345677777777655444322 112   23578999999999999999742             1  


Q ss_pred             -CC-----CCCcchhHHHHhHHHhhccC---ChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCC
Q 026402          124 -WG-----EVDTRFSYIAICCLSILQRL---DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALH  194 (239)
Q Consensus       124 -~~-----~~d~~~ty~al~~l~~l~~~---~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~  194 (239)
                       ..     .+.+..|..++.+|..++..   ....++++++||+++|++||+|..+.+. ...+.|.+++.+|..++...
T Consensus       427 ~f~d~~~d~~~~~~T~~~l~aL~~~~~r~~~~~~~i~rAl~~L~~~Q~~DGsw~g~wg~-~y~YgT~~al~aL~~~G~~~  505 (621)
T TIGR01787       427 VFGDIMIDPPYVDVTARVIQALGAFGHRADEIRNVLERALEYLRREQRADGSWFGRWGV-NYTYGTGFVLSALAAAGRTY  505 (621)
T ss_pred             hhccccccCCCCchHHHHHHHHHHhcCccHhHHHHHHHHHHHHHHhcCCCCCCcccCCC-CCchhHHHHHHHHHHhCCcc
Confidence             00     11123466677777666531   1346899999999999999999765443 44566889999999888642


Q ss_pred             --CCCHHHHHHHHHhccccCCccCCCC----------CCCCChhhhhhhhccCC
Q 026402          195 --HVDKDLLGWWLCERQVKSGGLNGRP----------EKLPDVGLLLLVGSFKL  236 (239)
Q Consensus       195 --~~~~~~~~~~L~~~Q~~~GGf~~~~----------~k~~D~c~s~~~~~~l~  236 (239)
                        ...++++++||+++|+++|||+...          ...+|+..+.|++.+|.
T Consensus       506 ~~~~~i~rA~~~L~~~Q~~DGGWge~~~s~~~~~y~~~~~S~~s~Ta~AL~AL~  559 (621)
T TIGR01787       506 RNCPEVQKACDWLLSRQMPDGGWGEDCFSYEDPSYVGSGGSTPSQTGWALMALI  559 (621)
T ss_pred             cCCHHHHHHHHHHHhhcCCCCCCCcCCccccccccCCCCCCCHHHHHHHHHHHH
Confidence              2458999999999999999998542          23578999999998875

This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.

>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement

Probab=99.80  E-value=3.9e-18  Score=146.24  Aligned_cols=197  Identities=14%  Similarity=0.061  Sum_probs=143.5

Q ss_pred             HHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCC---CcCHHHHHHHHHhccCCCCCCCCCCC------
Q 026402            6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILKCQDESGGFAGNIG------   76 (239)
Q Consensus         6 ~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~---~~~~~~~i~~l~~~q~~dGgf~~~~~------   76 (239)
                      +++.++.+.+.|++||+|..|...+..+|.|.+++.+|...+...   +...+++++||.+.|++||+|.....      
T Consensus        54 i~~g~~r~l~~q~~dGsf~~w~~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m  133 (297)
T cd02896          54 IRQGYQRQLSYRKPDGSYAAWKNRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSPVIHREM  133 (297)
T ss_pred             HHHHHHHHHhccCCCCCccCCCCCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhc
Confidence            345666667889999999988877889999999999998887532   22577899999999999999996521      


Q ss_pred             ------CCCchhHHHHHHHHHHhcCCCC-------CCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhc
Q 026402           77 ------HDPHVLYTLSAVQVLALFDKVD-------ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQ  143 (239)
Q Consensus        77 ------~~~~~~~T~~al~~L~~l~~~~-------~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~  143 (239)
                            .++++..|.+++.+|...+...       ...++++++||.+.+.+-          .++..+..+.-+|.+.+
T Consensus       134 ~gg~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL~~~~~~~----------~~~Y~~Al~ayALal~~  203 (297)
T cd02896         134 TGGVEGSEGDVSLTAFVLIALQEARSICPPEVQNLDQSIRKAISYLENQLPNL----------QRPYALAITAYALALAD  203 (297)
T ss_pred             cCCccccCCCccchHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhcccC----------CChHHHHHHHHHHHHcC
Confidence                  1356778889988887765422       124689999999987541          11111222223334443


Q ss_pred             cCChhcHHHHHHHHHhccCCCCCccCCC---------C--CCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccC
Q 026402          144 RLDKINVDKAVEYIVSCKNLDGGFGCTP---------G--GESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKS  212 (239)
Q Consensus       144 ~~~~~~~~~~~~~l~~~Q~~dGGf~~~~---------~--~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~  212 (239)
                      .   ...+++.++|+++|+.|||+++..         .  ...++..|.|||.++...+  +.....+.++||.+.|+..
T Consensus       204 ~---~~~~~a~~~L~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~vE~TAYALLall~~~--~~~~a~~iv~WL~~qr~~~  278 (297)
T cd02896         204 S---PLSHAANRKLLSLAKRDGNGWYWWTIDSPYWPVPGPSAITVETTAYALLALLKLG--DIEYANPIARWLTEQRNYG  278 (297)
T ss_pred             C---hhhHHHHHHHHHHhhhCCCcceeccCcCccCCCCCCchhhhHHHHHHHHHHHhcC--CchhHHHHHHHHHhcCCCC
Confidence            3   367889999999999999987521         1  2237889999997776665  3446788999999999999


Q ss_pred             CccCC
Q 026402          213 GGLNG  217 (239)
Q Consensus       213 GGf~~  217 (239)
                      |||..
T Consensus       279 Ggf~s  283 (297)
T cd02896         279 GGFGS  283 (297)
T ss_pred             CCeeh
Confidence            99973

The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.

>PLN03012 Camelliol C synthase

Probab=99.78  E-value=3.8e-18  Score=159.43  Aligned_cols=165  Identities=17%  Similarity=0.150  Sum_probs=127.4

Q ss_pred             cHHHHHHHHHHcccCCCCcccccc---------------------ccchHHHHHHHHHHHHhhCCCC--------CcCHH
Q 026402            5 AADKHVKYIISVEKKKDSFESVVM---------------------EHLRLNGAYWGLTTLDILGKLD--------AVDEE   55 (239)
Q Consensus         5 ~~~~~~~yl~~~q~~dg~~~~~~~---------------------~~~~~~~~y~al~~l~ll~~~~--------~~~~~   55 (239)
                      ...++++||.++|++||||..+..                     +++-...|--+|.+|.+++...        ...++
T Consensus       514 ~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~i~~~i~  593 (759)
T PLN03012        514 QLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTEEINAFIK  593 (759)
T ss_pred             HHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchhhhHHHHH
Confidence            356899999999999999853321                     2333334666788888876521        12477


Q ss_pred             HHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCCC--CCCHHHHHHHHHhccCCCCCcccCCC---------
Q 026402           56 DVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVD--ILDADKVSNYIVGLQNEDGSFSGDIW---------  124 (239)
Q Consensus        56 ~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~--~~~~~~~~~~l~~~Q~~dGgf~~~~~---------  124 (239)
                      ++++||++.|++||||.+..+. ..+..|.+||.+|...+...  ...++++++||++.|++||||+++..         
T Consensus       594 rAv~~L~~~Q~~DGsW~G~Wgv-~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~  672 (759)
T PLN03012        594 KAAEYIENIQMLDGSWYGNWGI-CFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYIA  672 (759)
T ss_pred             HHHHHHHHhcCCCCCCcccccc-cCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCCCCCCCCccccC
Confidence            8999999999999999987653 44568999999998877532  23489999999999999999997532         


Q ss_pred             ---CCCCcchhHHHHhHHHhhccCC--hhcHHHHHHHHHhccCCCCCccCC
Q 026402          125 ---GEVDTRFSYIAICCLSILQRLD--KINVDKAVEYIVSCKNLDGGFGCT  170 (239)
Q Consensus       125 ---~~~d~~~ty~al~~l~~l~~~~--~~~~~~~~~~l~~~Q~~dGGf~~~  170 (239)
                         +.+.+..|.||+.+|...+...  +..++|+++||++.|.+||+|-..
T Consensus       673 ~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~dG~W~q~  723 (759)
T PLN03012        673 QEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLENGDFPQQ  723 (759)
T ss_pred             CCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccCCCCCCCc
Confidence               2366778999999998888643  346899999999999999999653

>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M)

Probab=99.77  E-value=5.1e-17  Score=139.06  Aligned_cols=199  Identities=13%  Similarity=0.085  Sum_probs=138.5

Q ss_pred             HHHHHHHHH-------HcccCCCCccccccc--cchHHHHHHHHHHHHhhCCCC---CcCHHHHHHHHHhccCCCCCCCC
Q 026402            6 ADKHVKYII-------SVEKKKDSFESVVME--HLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILKCQDESGGFAG   73 (239)
Q Consensus         6 ~~~~~~yl~-------~~q~~dg~~~~~~~~--~~~~~~~y~al~~l~ll~~~~---~~~~~~~i~~l~~~q~~dGgf~~   73 (239)
                      ++++.+||+       +.|++||+|..|+..  ++.+|.|.+++.+|...+...   ...++++++||.+.|++||||..
T Consensus        44 ~~~~~~~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~v~~~~i~ra~~wL~~~Q~~dG~f~~  123 (292)
T cd02897          44 ESKALGFLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARPFIYIDENVLQQALTWLSSHQKSNGCFRE  123 (292)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCCeecccCCCCCcchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCCCCCCC
Confidence            356666666       579999999988654  678999999999998877422   23588899999999999999986


Q ss_pred             CC---------CCCCchhHHHHHHHHHHhcCCCC-CCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhc
Q 026402           74 NI---------GHDPHVLYTLSAVQVLALFDKVD-ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQ  143 (239)
Q Consensus        74 ~~---------~~~~~~~~T~~al~~L~~l~~~~-~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~  143 (239)
                      ..         +..+.+..|.+++.+|...+... ...++++++||.+.+.+          ..++..+..+..+|.+.+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~~~~~i~~a~~yL~~~~~~----------~~~~y~~al~a~AL~~~~  193 (292)
T cd02897         124 VGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPSERPVVEKALSCLEAALDS----------ISDPYTLALAAYALTLAG  193 (292)
T ss_pred             CCcccChhhcCCCCCCcchHHHHHHHHHhcCCccccHHHHHHHHHHHHhccc----------CCCHHHHHHHHHHHHHcC
Confidence            42         12345678899999888776532 22368999999998764          112333333445555555


Q ss_pred             cCChhcHHHHHHHHHh---ccCCCCCccCC----------C-CCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhcc
Q 026402          144 RLDKINVDKAVEYIVS---CKNLDGGFGCT----------P-GGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQ  209 (239)
Q Consensus       144 ~~~~~~~~~~~~~l~~---~Q~~dGGf~~~----------~-~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q  209 (239)
                      .   ...+++++.+.+   .++.+|+|+..          + +..+++..|.|+|.+|...+..+.....+.++||.+.|
T Consensus       194 ~---~~~~~~~~~l~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ve~TAyaLlall~~~~~~~~~~~~~v~WL~~~q  270 (292)
T cd02897         194 S---EKRPEALKKLDELAISEDGTKHWSRPPPSEEGPSYYWQAPSAEVEMTAYALLALLSAGGEDLAEALPIVKWLAKQR  270 (292)
T ss_pred             C---ccHHHHHHHHHHHHhccCCCCCCCcCCCcccccccCCCCCcchHHHHHHHHHHHHHcCCccHhHHHHHHHHHHHcC
Confidence            2   224455555544   44556777642          1 12468889999998887776322344677899999999


Q ss_pred             ccCCccCC
Q 026402          210 VKSGGLNG  217 (239)
Q Consensus       210 ~~~GGf~~  217 (239)
                      +++|||..
T Consensus       271 ~~~Ggf~s  278 (292)
T cd02897         271 NSLGGFSS  278 (292)
T ss_pred             CCCCCccc
Confidence            99999974

This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.

>PLN02993 lupeol synthase

Probab=99.75  E-value=4.5e-17  Score=152.55  Aligned_cols=206  Identities=17%  Similarity=0.097  Sum_probs=147.3

Q ss_pred             cchHHHHHHHHHHHHhhCCC--CCcCHHHHHHHHHhccCC---------------CCCCCCC--CCCCCchhHHHHHHHH
Q 026402           30 HLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQDE---------------SGGFAGN--IGHDPHVLYTLSAVQV   90 (239)
Q Consensus        30 ~~~~~~~y~al~~l~ll~~~--~~~~~~~~i~~l~~~q~~---------------dGgf~~~--~~~~~~~~~T~~al~~   90 (239)
                      .+.+|.|-+++.+|.--|..  .....+++.+||++.|-.               .|||+..  ....|+...|..++.+
T Consensus       415 gSqvWDTa~a~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sDdTAe~lka  494 (763)
T PLN02993        415 GSQLWDTGFAIQALLASDLSDETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGWQVSDCTAEALKC  494 (763)
T ss_pred             CCchHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCCCcCCchHHHHHH
Confidence            47899999999999887753  233688999999998862               2887765  3467888899888875


Q ss_pred             HHhcCCCC------CC---CHHHHHHHHHhccCCCCCcccC------------C------CCCCCcchhHH---HHhHHH
Q 026402           91 LALFDKVD------IL---DADKVSNYIVGLQNEDGSFSGD------------I------WGEVDTRFSYI---AICCLS  140 (239)
Q Consensus        91 L~~l~~~~------~~---~~~~~~~~l~~~Q~~dGgf~~~------------~------~~~~d~~~ty~---al~~l~  140 (239)
                      +.++....      .+   ...++++||.++|++||||+.-            |      +-..|..+.+|   ++.+|.
T Consensus       495 ~l~l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~  574 (763)
T PLN02993        495 CMLLSMMPADVVGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALV  574 (763)
T ss_pred             HHHHhhCccccccccchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHH
Confidence            54443221      12   2578999999999999998742            1      00123344455   444444


Q ss_pred             hhccCC--------hhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCC--CCHHHHHHHHHhccc
Q 026402          141 ILQRLD--------KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHH--VDKDLLGWWLCERQV  210 (239)
Q Consensus       141 ~l~~~~--------~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~--~~~~~~~~~L~~~Q~  210 (239)
                      +++...        ...++++++||++.|++||||..+.+ ....+.|++||.+|..+|....  ..++++++||+++|+
T Consensus       575 ~~~~~~p~~r~~ei~~~i~rAv~yL~~~Q~~DGSW~G~Wg-v~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~  653 (763)
T PLN02993        575 LFKQLYPDHRTKEIIKSIEKAVQFIESKQTPDGSWYGNWG-ICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQR  653 (763)
T ss_pred             HhcccCcchhhhhHHHHHHHHHHHHHHhcCCCCCcccccc-cccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC
Confidence            444311        24678999999999999999987543 4677789999999998887432  458999999999999


Q ss_pred             cCCccCCCC------------CCCCChhhhhhhhccCC
Q 026402          211 KSGGLNGRP------------EKLPDVGLLLLVGSFKL  236 (239)
Q Consensus       211 ~~GGf~~~~------------~k~~D~c~s~~~~~~l~  236 (239)
                      ++|||+...            +..+-+.-+.|++-+|.
T Consensus       654 ~DGGWGEs~~S~~~~~y~~~~~~~St~~qTAwAllaL~  691 (763)
T PLN02993        654 DDGGWGESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLI  691 (763)
T ss_pred             CCCCcCcCcCcCCCcccccCCCCCCchhhHHHHHHHHH
Confidence            999998642            12344577777766553

>COG1689 Uncharacterized protein conserved in archaea [Function unknown]

Probab=99.62  E-value=1.3e-14  Score=114.90  Aligned_cols=151  Identities=18%  Similarity=0.201  Sum_probs=123.8

Q ss_pred             cchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 026402           30 HLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYI  109 (239)
Q Consensus        30 ~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l  109 (239)
                      +..+..+||+..+|.+.+...   .+++-+|+++.|+++|++...-...|++..||.|+.+|....     .++....|=
T Consensus       120 ~~~Le~ty~~~~~l~~~n~~~---~eE~k~~v~~~~re~~~g~~YGv~~pnt~~t~~aly~l~~k~-----~~~~v~~Fe  191 (274)
T COG1689         120 ATPLEATYWMMSALNMVNYEY---LEEMKEKVIEFVREFGIGDAYGVTHPNTTMTYQALYTLGSKG-----PKEEVRHFE  191 (274)
T ss_pred             CchHHHHHHHHHHHHHhCcCc---hHHHHHHHHHHhhhhccccccccCCcchHHHHHHHHhhcccc-----chHHHHhHH
Confidence            456888999999999999754   578888999999999888887777888899998888876433     345555554


Q ss_pred             HhccCCCCCcccCCCC-CCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhccCCCCCccCCC-CCCCchhhHHHHHHHH
Q 026402          110 VGLQNEDGSFSGDIWG-EVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTP-GGESHSGQIFCCVGAL  187 (239)
Q Consensus       110 ~~~Q~~dGgf~~~~~~-~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~Q~~dGGf~~~~-~~~s~~~~T~~al~aL  187 (239)
                      .. --.+|||...|++ ++.+..||.++.+|.+|+..  ..+.+.++||++.||+||||+.+. .+-|....||+|++.|
T Consensus       192 ~~-c~~~Ggf~~~P~syPPYiE~t~ya~r~lelL~~k--~~i~~~~rFI~slqN~nGGFRRS~~~GISt~e~tYrAl~~L  268 (274)
T COG1689         192 LC-CGDWGGFTEVPNSYPPYIEPTFYALRGLELLGGK--YCISDHIRFIRSLQNQNGGFRRSYELGISTFENTYRALASL  268 (274)
T ss_pred             hc-cccCCCcccCCCCCCCccchHHHHHhHHHHHccC--cCchHHHHHHHHhhcCCCCeeeeEeccccchHHHHHHHHHH
Confidence            44 4567999999987 66788999999999999874  457889999999999999998765 4679999999999999


Q ss_pred             HHhC
Q 026402          188 AIAG  191 (239)
Q Consensus       188 ~~l~  191 (239)
                      +.+.
T Consensus       269 ~~l~  272 (274)
T COG1689         269 ASLH  272 (274)
T ss_pred             HHHh
Confidence            8774

>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]

Probab=99.61  E-value=2.4e-14  Score=129.96  Aligned_cols=159  Identities=28%  Similarity=0.328  Sum_probs=125.0

Q ss_pred             HHHHHHHhccCCCCCCCCCCC---------------------CCCchhHHHHHHHHHHhcCCCC------CC--CHHHHH
Q 026402           56 DVISWILKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKVD------IL--DADKVS  106 (239)
Q Consensus        56 ~~i~~l~~~q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~~------~~--~~~~~~  106 (239)
                      .+++.|+..|..+|||....-                     .++.+..|-+++++|......-      .+  .+++++
T Consensus       516 dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~~yvEcT~s~I~aL~~F~k~~p~~r~~Ei~~~i~~av  595 (760)
T KOG0497|consen  516 DAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAEVFGDIMVEYEYVECTSSAIQALVYFHKLFPGHRKKEIEKSIEKAV  595 (760)
T ss_pred             HHHHHHHhhhhccCccccccccchHHHHHhcCchhcccceeeeecccccHHHHHHHHHhhcccCccHHHHHHHHHHHHHH
Confidence            477789999999999986531                     1345678889999998775421      11  268899


Q ss_pred             HHHHhccCCCCCcccCCCCCCCcchhHHHHhHH---HhhccC--ChhcHHHHHHHHHhccCCCCCccCCCC---------
Q 026402          107 NYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCL---SILQRL--DKINVDKAVEYIVSCKNLDGGFGCTPG---------  172 (239)
Q Consensus       107 ~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l---~~l~~~--~~~~~~~~~~~l~~~Q~~dGGf~~~~~---------  172 (239)
                      +||++.|.+||+|.++++    +|+||.+..++   ...|+.  .-..++++++||++.|++||||++.+-         
T Consensus       596 ~~ie~~Q~~DGSWyGsWg----vCFtY~t~Fa~~gl~aaGkty~nc~~irka~~Fll~~Q~~~GGWgEs~lscp~~~Yi~  671 (760)
T KOG0497|consen  596 EFIEKLQLPDGSWYGSWG----VCFTYGTWFALRGLAAAGKTYENCEAIRKACDFLLSKQNPDGGWGESYLSCPEKRYIP  671 (760)
T ss_pred             HHHHHcCCCCCcccchhh----HHHHHHHHHhcchhhhcchhhhccHHHHHHHHHHHhhhcccCCCccccccCccccccc
Confidence            999999999999999875    78888755544   334432  235689999999999999999998742         


Q ss_pred             ---CCCchhhHHHHHHHHHHhCCCC--CCCHHHHHHHHHhccccCCccCCC
Q 026402          173 ---GESHSGQIFCCVGALAIAGALH--HVDKDLLGWWLCERQVKSGGLNGR  218 (239)
Q Consensus       173 ---~~s~~~~T~~al~aL~~l~~~~--~~~~~~~~~~L~~~Q~~~GGf~~~  218 (239)
                         ..++...|.||+.+|.+.++.+  +.++.|++..|.+.|.++|-|.-.
T Consensus       672 ~~gn~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~linsQ~~nGdfpqq  722 (760)
T KOG0497|consen  672 LEGNKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLINSQLENGDFPQQ  722 (760)
T ss_pred             cccccccchhHHHHHHHHHhcCCcccccchHHHHHHHHHhcccccCCcchh
Confidence               2477889999999999999854  457899999999999999988744

>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement

Probab=99.52  E-value=3.3e-13  Score=115.78  Aligned_cols=171  Identities=18%  Similarity=0.087  Sum_probs=123.4

Q ss_pred             HHHHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCCCCCC---HHHHHHHHHhccCCCCCcccCC-------
Q 026402           54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVGLQNEDGSFSGDI-------  123 (239)
Q Consensus        54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~~Q~~dGgf~~~~-------  123 (239)
                      ++++++.++++|++||||+.+....++++.|.+++.+|........++   ++++++||.+.|++||+|....       
T Consensus        54 i~~g~~r~l~~q~~dGsf~~w~~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m  133 (297)
T cd02896          54 IRQGYQRQLSYRKPDGSYAAWKNRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSPVIHREM  133 (297)
T ss_pred             HHHHHHHHHhccCCCCCccCCCCCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhc
Confidence            566777888999999999988877889999999999998776433333   5789999999999999998642       


Q ss_pred             -CC----CCCcchhHHHHhHHHhhccCC-------hhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhC
Q 026402          124 -WG----EVDTRFSYIAICCLSILQRLD-------KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAG  191 (239)
Q Consensus       124 -~~----~~d~~~ty~al~~l~~l~~~~-------~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~  191 (239)
                       ++    ++++..|-.++.+|...+...       ...++++++||.++|..          ..+++.+..+.-+|++.+
T Consensus       134 ~gg~~~~~~~~~lTA~vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL~~~~~~----------~~~~Y~~Al~ayALal~~  203 (297)
T cd02896         134 TGGVEGSEGDVSLTAFVLIALQEARSICPPEVQNLDQSIRKAISYLENQLPN----------LQRPYALAITAYALALAD  203 (297)
T ss_pred             cCCccccCCCccchHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcC
Confidence             01    235555666666665554422       23678999999998753          235555555555666665


Q ss_pred             CCCCCCHHHHHHHHHhccccCCccCCC-----------CCCCCChhhhhhhhccCCC
Q 026402          192 ALHHVDKDLLGWWLCERQVKSGGLNGR-----------PEKLPDVGLLLLVGSFKLD  237 (239)
Q Consensus       192 ~~~~~~~~~~~~~L~~~Q~~~GGf~~~-----------~~k~~D~c~s~~~~~~l~~  237 (239)
                      .   ....++.++|.++|+.+||+..+           +....++.-|-|++-+++.
T Consensus       204 ~---~~~~~a~~~L~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~vE~TAYALLall~  257 (297)
T cd02896         204 S---PLSHAANRKLLSLAKRDGNGWYWWTIDSPYWPVPGPSAITVETTAYALLALLK  257 (297)
T ss_pred             C---hhhHHHHHHHHHHhhhCCCcceeccCcCccCCCCCCchhhhHHHHHHHHHHHh
Confidence            3   25788999999999999988743           2234478788777766543

The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.

>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M)

Probab=99.46  E-value=5e-12  Score=108.21  Aligned_cols=187  Identities=13%  Similarity=0.075  Sum_probs=119.4

Q ss_pred             HHHHHHHHhhCCCCCcCHHHHHHHH-------HhccCCCCCCCCCCCC--CCchhHHHHHHHHHHhcCCCCCC---CHHH
Q 026402           37 YWGLTTLDILGKLDAVDEEDVISWI-------LKCQDESGGFAGNIGH--DPHVLYTLSAVQVLALFDKVDIL---DADK  104 (239)
Q Consensus        37 y~al~~l~ll~~~~~~~~~~~i~~l-------~~~q~~dGgf~~~~~~--~~~~~~T~~al~~L~~l~~~~~~---~~~~  104 (239)
                      .+++.-|...+..++..++++++||       +++|++||||+.+...  .++++.|.+++.+|........+   .+++
T Consensus        27 ~~~~~yl~~~~~~~~~~~~~~~~~l~~g~~~~~~~q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~v~~~~i~r  106 (292)
T cd02897          27 IYVLDYLKATGQLTPEIESKALGFLRTGYQRQLTYKHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARPFIYIDENVLQQ  106 (292)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhccCCCCCeecccCCCCCcchhhHHHHHHHHHHHhccCCCCHHHHHH
Confidence            3444444444433322344554444       5689999999987543  78899999999998876542222   3688


Q ss_pred             HHHHHHhccCCCCCcccC-C--------CCCCCcchhHHHHhHHHhhccCC-hhcHHHHHHHHHhccCCCCCccCCCCCC
Q 026402          105 VSNYIVGLQNEDGSFSGD-I--------WGEVDTRFSYIAICCLSILQRLD-KINVDKAVEYIVSCKNLDGGFGCTPGGE  174 (239)
Q Consensus       105 ~~~~l~~~Q~~dGgf~~~-~--------~~~~d~~~ty~al~~l~~l~~~~-~~~~~~~~~~l~~~Q~~dGGf~~~~~~~  174 (239)
                      +++||.+.|++||||... +        ...+++..|-.++.+|...+... ...++++++||.+.+..          .
T Consensus       107 a~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~TA~vl~aL~~~g~~~~~~~i~~a~~yL~~~~~~----------~  176 (292)
T cd02897         107 ALTWLSSHQKSNGCFREVGRVFHKAMQGGVDDEVALTAYVLIALLEAGLPSERPVVEKALSCLEAALDS----------I  176 (292)
T ss_pred             HHHHHHHhcCCCCCCCCCCcccChhhcCCCCCCcchHHHHHHHHHhcCCccccHHHHHHHHHHHHhccc----------C
Confidence            999999999999999842 1        01123344555666666666532 34679999999987764          3


Q ss_pred             CchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhc---cccCCccCCC-----------CCCCCChhhhhhhhccCC
Q 026402          175 SHSGQIFCCVGALAIAGALHHVDKDLLGWWLCER---QVKSGGLNGR-----------PEKLPDVGLLLLVGSFKL  236 (239)
Q Consensus       175 s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~---Q~~~GGf~~~-----------~~k~~D~c~s~~~~~~l~  236 (239)
                      .+++.+..+..+|..++.   ....+++++|...   +...|+|...           ....+|+.-|-|++-+|.
T Consensus       177 ~~~y~~al~a~AL~~~~~---~~~~~~~~~l~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ve~TAyaLlall  249 (292)
T cd02897         177 SDPYTLALAAYALTLAGS---EKRPEALKKLDELAISEDGTKHWSRPPPSEEGPSYYWQAPSAEVEMTAYALLALL  249 (292)
T ss_pred             CCHHHHHHHHHHHHHcCC---ccHHHHHHHHHHHHhccCCCCCCCcCCCcccccccCCCCCcchHHHHHHHHHHHH
Confidence            566778777888888872   2245555555544   4445565421           123567777777665553

This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.

>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A

Probab=99.45  E-value=3.6e-14  Score=103.69  Aligned_cols=106  Identities=22%  Similarity=0.324  Sum_probs=40.3

Q ss_pred             HHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccC-ChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhH
Q 026402          102 ADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI  180 (239)
Q Consensus       102 ~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~-~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T  180 (239)
                      ++++++||.+.|++||||.+...  .++..|++++.+|..++.. ....++++++||+++|++||||+..+  ..+...|
T Consensus         1 i~~~~~~l~~~Q~~dG~W~~~~~--~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~~--~~~~~~t   76 (109)
T PF13243_consen    1 IKRAAEWLLSQQNPDGSWGYNWG--SDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQNPDGGWGYSG--GEYVSMT   76 (109)
T ss_dssp             ------------------------------------------TS-SSBSSHHHHHHHHH---TTS--S-TS----HHHHH
T ss_pred             Ccccccccccccccccccccccc--ccccccccccccccccCCCCcHHHHHHHHHHHHHhcCCCCCCCCcC--CCCHHHH
Confidence            36789999999999999986533  4677788888887777652 24568999999999999999999873  3334566


Q ss_pred             HHHHHHHHHhCCC-CCCCHHHHHHHHHhcccc
Q 026402          181 FCCVGALAIAGAL-HHVDKDLLGWWLCERQVK  211 (239)
Q Consensus       181 ~~al~aL~~l~~~-~~~~~~~~~~~L~~~Q~~  211 (239)
                      ..++.+|.+.+.. +...++++++||+++|.+
T Consensus        77 ~~~~~~l~~~~~~~~~~~~~r~~~wi~~~~~~  108 (109)
T PF13243_consen   77 AAAIAALALAGVYPDDEAVERGLEWILSHQLD  108 (109)
T ss_dssp             HHHHHHHHHHHTT--HHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Confidence            6777777666543 234489999999998753

>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family

Probab=99.45  E-value=1.5e-13  Score=83.87  Aligned_cols=44  Identities=45%  Similarity=1.005  Sum_probs=41.8

Q ss_pred             hcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhC
Q 026402          148 INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAG  191 (239)
Q Consensus       148 ~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~  191 (239)
                      ++++++++||++||++||||+..|+.++|+++|||++++|++++
T Consensus         1 id~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg   44 (44)
T PF00432_consen    1 IDVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG   44 (44)
T ss_dssp             SHHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence            46899999999999999999999999999999999999999985

; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....

>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M)

Probab=99.43  E-value=1.6e-11  Score=104.18  Aligned_cols=197  Identities=16%  Similarity=0.123  Sum_probs=126.0

Q ss_pred             HHHHHHHHHHcccCCCCccccccc-cchHHHHHHHHHHHHhhCCCC---CcCHHHHHHHHHhccCCCCCCCCCCC-----
Q 026402            6 ADKHVKYIISVEKKKDSFESVVME-HLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILKCQDESGGFAGNIG-----   76 (239)
Q Consensus         6 ~~~~~~yl~~~q~~dg~~~~~~~~-~~~~~~~y~al~~l~ll~~~~---~~~~~~~i~~l~~~q~~dGgf~~~~~-----   76 (239)
                      +++++++|.+.|++||||..|... .++++.|.+++.+|..++...   +...+++++||.+.|++||+|.....     
T Consensus        51 i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~~  130 (282)
T cd02891          51 IRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRELGPVIHRE  130 (282)
T ss_pred             HHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCCCCccCHh
Confidence            568889999999999999988766 789999999999998765422   22488999999999999999987543     


Q ss_pred             ----CCCchhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHH
Q 026402           77 ----HDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDK  152 (239)
Q Consensus        77 ----~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~  152 (239)
                          ..+....|.+++.+|...+......++++++||.+.....          .+......+..+|.+.+.  ....++
T Consensus       131 ~~~~~~~~~~~tA~al~~L~~~g~~~~~~~~~a~~~L~~~~~~~----------~~~~~~a~la~al~~~g~--~~~~~~  198 (282)
T cd02891         131 MKGGVDDSVSLTAYVLIALAEAGKACDASIEKALAYLETQLDGL----------LDPYALAILAYALALAGD--STRADE  198 (282)
T ss_pred             hcCCcCCCcchHHHHHHHHHHhcccchHHHHHHHHHHHHhcccC----------CChHHHHHHHHHHHHcCc--cHHHHH
Confidence                2344567888888888766543345788999999876531          112222223344455544  122344


Q ss_pred             HHHHHHhccCCCCCc-------cCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccCCccC
Q 026402          153 AVEYIVSCKNLDGGF-------GCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLN  216 (239)
Q Consensus       153 ~~~~l~~~Q~~dGGf-------~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~GGf~  216 (239)
                      +++-|...-...++.       ....+.......|.+++.  ..+...+.....+.++||.+.+...|+|.
T Consensus       199 ~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~a~a~all--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~  267 (282)
T cd02891         199 ALKKLLEAAREKGGTAHWSLSWPGDYGSSLRVEATAYALL--ALLKLGDLEEAGPIAKWLAQQRNSGGGFL  267 (282)
T ss_pred             HHHHHHHHhhhcCCcccccCCCCCCCCchhhHHHHHHHHH--HHHhcCChhhHHHHHHHHHHcCCCCCCcc
Confidence            455554433222321       111222334445555553  33332234456889999998666666765

Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga

>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A

Probab=99.32  E-value=1.4e-12  Score=95.31  Aligned_cols=105  Identities=21%  Similarity=0.264  Sum_probs=36.2

Q ss_pred             HHHHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCC-CCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchh
Q 026402           54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKV-DILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFS  132 (239)
Q Consensus        54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~-~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~t  132 (239)
                      ++++++||++.|++||+|....  .++...|++++.+|...+.. ....++++++||.++|++||||...+.  .+...|
T Consensus         1 i~~~~~~l~~~Q~~dG~W~~~~--~~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q~~dG~w~~~~~--~~~~~t   76 (109)
T PF13243_consen    1 IKRAAEWLLSQQNPDGSWGYNW--GSDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSHQNPDGGWGYSGG--EYVSMT   76 (109)
T ss_dssp             ------------------------------------------TS-SSBSSHHHHHHHHH---TTS--S-TS----HHHHH
T ss_pred             Cccccccccccccccccccccc--cccccccccccccccccCCCCcHHHHHHHHHHHHHhcCCCCCCCCcCC--CCHHHH
Confidence            3688999999999999997553  36678888888888777642 222479999999999999999997632  223334


Q ss_pred             HHHHhHHHhhcc-CChhcHHHHHHHHHhccC
Q 026402          133 YIAICCLSILQR-LDKINVDKAVEYIVSCKN  162 (239)
Q Consensus       133 y~al~~l~~l~~-~~~~~~~~~~~~l~~~Q~  162 (239)
                      ..++.++.+.+. .....++++++||++.|.
T Consensus        77 ~~~~~~l~~~~~~~~~~~~~r~~~wi~~~~~  107 (109)
T PF13243_consen   77 AAAIAALALAGVYPDDEAVERGLEWILSHQL  107 (109)
T ss_dssp             HHHHHHHHHHHTT--HHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Confidence            445555544433 245668999999999864

>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family

Probab=99.29  E-value=4.9e-11  Score=99.65  Aligned_cols=194  Identities=14%  Similarity=0.127  Sum_probs=127.5

Q ss_pred             HHHHHHHcccCCCCcccc-ccccchHHHHHHHHHHHHhhCCCCCc---CHHHHHHHHHhccCCCCCCCCCCCC-------
Q 026402            9 HVKYIISVEKKKDSFESV-VMEHLRLNGAYWGLTTLDILGKLDAV---DEEDVISWILKCQDESGGFAGNIGH-------   77 (239)
Q Consensus         9 ~~~yl~~~q~~dg~~~~~-~~~~~~~~~~y~al~~l~ll~~~~~~---~~~~~i~~l~~~q~~dGgf~~~~~~-------   77 (239)
                      ..+-+.+.+++||+|..+ ...++.+|.|-|++..+....+...+   .++++++||.+.|++||.|......       
T Consensus         2 GYqr~L~y~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g   81 (246)
T PF07678_consen    2 GYQRQLSYRRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQG   81 (246)
T ss_dssp             HHHHHHTTB-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSG
T ss_pred             chHHHhcCCCCCCCeeccccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCC
Confidence            345577888999999988 66789999999999999988875332   4788999999999999999864321       


Q ss_pred             --CCchhHHHHHHHHHHhcCCCC-------CCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHH-HHhHHHhhccCCh
Q 026402           78 --DPHVLYTLSAVQVLALFDKVD-------ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYI-AICCLSILQRLDK  147 (239)
Q Consensus        78 --~~~~~~T~~al~~L~~l~~~~-------~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~-al~~l~~l~~~~~  147 (239)
                        ..++..|.+.+.+|...+...       ...++++++||++....             ....|. |+.+..+......
T Consensus        82 ~~~~~~~lTA~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~~~~-------------~~~~Y~lAl~aYAL~la~~~  148 (246)
T PF07678_consen   82 GVEDDIALTAYVLIALLEAGSLCDSEKPEYENAINKALNYLERHLDN-------------IQDPYTLALVAYALALAGDS  148 (246)
T ss_dssp             GGTHHHHHHHHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHHHGC-------------TSSHHHHHHHHHHHHHTTTC
T ss_pred             CCCCCeeehHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhccc-------------cCCHHHHHHHHHHHHhhccc
Confidence              234566777777776655321       12368999999877211             111332 2322222211134


Q ss_pred             hcHHHHHHHHHhccCCCCCccCCCCC--------------CCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccCC
Q 026402          148 INVDKAVEYIVSCKNLDGGFGCTPGG--------------ESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSG  213 (239)
Q Consensus       148 ~~~~~~~~~l~~~Q~~dGGf~~~~~~--------------~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~G  213 (239)
                      ...+++.+-|.+....+|+..+-+..              ..++..|.+||.++...  .+.......++||.+.|+..|
T Consensus       149 ~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~s~~vEtTaYaLLa~l~~--~~~~~~~~iv~WL~~qr~~~G  226 (246)
T PF07678_consen  149 PQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWSRGSSLDVETTAYALLALLKR--GDLEEASPIVRWLISQRNSGG  226 (246)
T ss_dssp             HHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT-SHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHCTTTTS
T ss_pred             chHHHHHHHHHHhhhhccccCcccCCcccccccccccccchHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHhcCCCC
Confidence            56678888888877666654221111              13567899998666555  334557889999999999999


Q ss_pred             ccCC
Q 026402          214 GLNG  217 (239)
Q Consensus       214 Gf~~  217 (239)
                      ||..
T Consensus       227 gf~S  230 (246)
T PF07678_consen  227 GFGS  230 (246)
T ss_dssp             STSS
T ss_pred             ccCc
Confidence            9974

The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....

>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family

Probab=99.26  E-value=5.2e-12  Score=76.99  Aligned_cols=44  Identities=39%  Similarity=0.704  Sum_probs=41.7

Q ss_pred             CCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhc
Q 026402          100 LDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQ  143 (239)
Q Consensus       100 ~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~  143 (239)
                      +|++++++||.++|++||||+++|++++|+.+||+++++|.+++
T Consensus         1 id~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg   44 (44)
T PF00432_consen    1 IDVEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG   44 (44)
T ss_dssp             SHHHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence            46899999999999999999999999999999999999999875

; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....

>COG1657 SqhC Squalene cyclase [Lipid metabolism]

Probab=99.23  E-value=2.9e-11  Score=108.58  Aligned_cols=204  Identities=18%  Similarity=0.094  Sum_probs=134.3

Q ss_pred             CCCCcccccc--ccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhccCCCCCCCCCCCC-------------------
Q 026402           19 KKDSFESVVM--EHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGH-------------------   77 (239)
Q Consensus        19 ~dg~~~~~~~--~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~-------------------   77 (239)
                      ..|+|..+.+  ..++...|-=++..+....  +..+.+.+++|+...|+..|||..++..                   
T Consensus       248 ~~g~W~f~~~~~~ypd~d~T~~~~~al~~~~--~~~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~~~~~  325 (517)
T COG1657         248 SPGGWGFSNINTGYPDADDTAGVVRALIGVQ--SLPNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVKAMVD  325 (517)
T ss_pred             CCCccceeecccCCCCchhhhHHHHHHHhhc--chhhHHhhhhHhhhcccccCceeeeccccccHHHhhCCHhhcccccc
Confidence            4577776654  2344433333333333333  2336788999999999999999987521                   


Q ss_pred             CCchhHHHHHHHHHHhcCCCC----CCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCC-----hh
Q 026402           78 DPHVLYTLSAVQVLALFDKVD----ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLD-----KI  148 (239)
Q Consensus        78 ~~~~~~T~~al~~L~~l~~~~----~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~-----~~  148 (239)
                      .+.+..|-..+.+|..++...    ...++++++||.+.|.++|.|.+...    +|++|.....+..+....     ..
T Consensus       326 ~s~adct~~~~~~l~a~~~yl~~~~~~~i~~a~e~LL~~Q~~~GsW~g~w~----v~~iY~~s~a~~~l~~~g~~~~~~~  401 (517)
T COG1657         326 PSTADCTHRVVLALAALNAYLEAYDGQPIERALEWLLSDQEPDGSWYGRWG----VCYIYGTSGALSALALVGETDENEV  401 (517)
T ss_pred             CCcccCCCccHHHHhhhhhccccccCCcccHHHhhhhhhccccCceeeEEE----EEEEEehhhhhhhhhccCccccchH
Confidence            222222322333333333221    35689999999999999999988764    577776655555544322     24


Q ss_pred             cHHHHHHHHHhccCCCCCccCCCCC----------CCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccCCccCCC
Q 026402          149 NVDKAVEYIVSCKNLDGGFGCTPGG----------ESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGR  218 (239)
Q Consensus       149 ~~~~~~~~l~~~Q~~dGGf~~~~~~----------~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~GGf~~~  218 (239)
                      .+.+++.|+.++|++||||+.....          .+-...|.||+..+......+...++..++.+.+.|.++|.+..+
T Consensus       402 ~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~~~~~t~~sl~~~~~wal~~~~~a~~~~~~~i~~~~~~~~~~~~~~g~~~~~  481 (517)
T COG1657         402 LVRKLISWLVSKQMPDGGWGEAKEAISDPVYTGTESSLLVQTNWALIALLTALEPNQEAIKPGINLLVSDQEPDGSWREA  481 (517)
T ss_pred             HHHHHHHHhhhccccCCCcccccccccccccccccchhhcchhHHHHHHHHhcccchhhhcccccccccCcCCCCccccc
Confidence            5789999999999999999886432          233457788888887776655555788999999999998888877


Q ss_pred             CCCCCChhhh
Q 026402          219 PEKLPDVGLL  228 (239)
Q Consensus       219 ~~k~~D~c~s  228 (239)
                      +-.-.=-|+.
T Consensus       482 ~~eg~~~~~~  491 (517)
T COG1657         482 EREGGFNCNF  491 (517)
T ss_pred             eecccCCCCc
Confidence            5333333443

>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M)

Probab=99.21  E-value=6.3e-10  Score=94.46  Aligned_cols=145  Identities=19%  Similarity=0.109  Sum_probs=102.0

Q ss_pred             CHHHHHHHHHhccCCCCCCCCCCCC-CCchhHHHHHHHHHHhcCCCCCCC---HHHHHHHHHhccCCCCCcccCCC----
Q 026402           53 DEEDVISWILKCQDESGGFAGNIGH-DPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVGLQNEDGSFSGDIW----  124 (239)
Q Consensus        53 ~~~~~i~~l~~~q~~dGgf~~~~~~-~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~~Q~~dGgf~~~~~----  124 (239)
                      .+++++++|+++|++||||+.+++. .++++.|.+++.+|........++   ++++++||.+.|.+||+|.....    
T Consensus        50 ~i~~~~~~l~~~Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~  129 (282)
T cd02891          50 YIRKGYQRLLTYQRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRELGPVIHR  129 (282)
T ss_pred             HHHHHHHHHHhhcCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCCCCccCH
Confidence            4677999999999999999999887 889999999999998765433333   78999999999999999986432    


Q ss_pred             -----CCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHH
Q 026402          125 -----GEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKD  199 (239)
Q Consensus       125 -----~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~  199 (239)
                           ...+...|..++.+|...+......++++++||.+....          ..++........+|.+++.  .....
T Consensus       130 ~~~~~~~~~~~~tA~al~~L~~~g~~~~~~~~~a~~~L~~~~~~----------~~~~~~~a~la~al~~~g~--~~~~~  197 (282)
T cd02891         130 EMKGGVDDSVSLTAYVLIALAEAGKACDASIEKALAYLETQLDG----------LLDPYALAILAYALALAGD--STRAD  197 (282)
T ss_pred             hhcCCcCCCcchHHHHHHHHHHhcccchHHHHHHHHHHHHhccc----------CCChHHHHHHHHHHHHcCc--cHHHH
Confidence                 123334566666666666654445789999999986643          2333444444555666654  23345


Q ss_pred             HHHHHHHhcc
Q 026402          200 LLGWWLCERQ  209 (239)
Q Consensus       200 ~~~~~L~~~Q  209 (239)
                      ++++-|...-
T Consensus       198 ~~l~~l~~~~  207 (282)
T cd02891         198 EALKKLLEAA  207 (282)
T ss_pred             HHHHHHHHHh
Confidence            5566665553

Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga

>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]

Probab=99.16  E-value=1.2e-10  Score=106.20  Aligned_cols=115  Identities=20%  Similarity=0.326  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC--CCcCHHHHHHHHHhccCCCCCCCCCC--------
Q 026402            6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQDESGGFAGNI--------   75 (239)
Q Consensus         6 ~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~--~~~~~~~~i~~l~~~q~~dGgf~~~~--------   75 (239)
                      ++++++||++.|.+||+|.... +...+.+|++++.+|...|..  +....+++++||++.|++||||+.++        
T Consensus       591 i~~av~~ie~~Q~~DGSWyGsW-gvCFtY~t~Fa~~gl~aaGkty~nc~~irka~~Fll~~Q~~~GGWgEs~lscp~~~Y  669 (760)
T KOG0497|consen  591 IEKAVEFIEKLQLPDGSWYGSW-GVCFTYGTWFALRGLAAAGKTYENCEAIRKACDFLLSKQNPDGGWGESYLSCPEKRY  669 (760)
T ss_pred             HHHHHHHHHHcCCCCCcccchh-hHHHHHHHHHhcchhhhcchhhhccHHHHHHHHHHHhhhcccCCCccccccCccccc
Confidence            5799999999999999986332 268888999999999999975  33478999999999999999999764        


Q ss_pred             ----CCCCchhHHHHHHHHHHhcCCCCC--CCHHHHHHHHHhccCCCCCccc
Q 026402           76 ----GHDPHVLYTLSAVQVLALFDKVDI--LDADKVSNYIVGLQNEDGSFSG  121 (239)
Q Consensus        76 ----~~~~~~~~T~~al~~L~~l~~~~~--~~~~~~~~~l~~~Q~~dGgf~~  121 (239)
                          +..+++..|..|+++|.+.+..+.  ..+++++..|...|.++|-|..
T Consensus       670 i~~~gn~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~linsQ~~nGdfpq  721 (760)
T KOG0497|consen  670 IPLEGNKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLINSQLENGDFPQ  721 (760)
T ss_pred             cccccccccchhHHHHHHHHHhcCCcccccchHHHHHHHHHhcccccCCcch
Confidence                346789999999999999987543  4789999999999999999874

>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family

Probab=98.72  E-value=9.8e-08  Score=79.79  Aligned_cols=153  Identities=20%  Similarity=0.182  Sum_probs=97.6

Q ss_pred             HHHHHHhccCCCCCCCCC-CCCCCchhHHHHHHHHHHhcCCCCCCC---HHHHHHHHHhccCCCCCcccCCC---C----
Q 026402           57 VISWILKCQDESGGFAGN-IGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVGLQNEDGSFSGDIW---G----  125 (239)
Q Consensus        57 ~i~~l~~~q~~dGgf~~~-~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~~Q~~dGgf~~~~~---~----  125 (239)
                      +.+-+++.+++||+|+.+ ...+++++.|.+++..|....+.-.+|   ++++++||.+.|++||+|.....   .    
T Consensus         2 GYqr~L~y~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g   81 (246)
T PF07678_consen    2 GYQRQLSYRRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQG   81 (246)
T ss_dssp             HHHHHHTTB-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSG
T ss_pred             chHHHhcCCCCCCCeeccccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCC
Confidence            445678899999999999 777899999999999999887764444   57899999999999999975321   0    


Q ss_pred             --CCCcchhHHHHhHHHhhccC-------ChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCC
Q 026402          126 --EVDTRFSYIAICCLSILQRL-------DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV  196 (239)
Q Consensus       126 --~~d~~~ty~al~~l~~l~~~-------~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~  196 (239)
                        ..++..|-.++.+|.-.+..       ....++++++||.+...          ...+++...-+--||.+++  +..
T Consensus        82 ~~~~~~~lTA~VliAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~~~----------~~~~~Y~lAl~aYAL~la~--~~~  149 (246)
T PF07678_consen   82 GVEDDIALTAYVLIALLEAGSLCDSEKPEYENAINKALNYLERHLD----------NIQDPYTLALVAYALALAG--DSP  149 (246)
T ss_dssp             GGTHHHHHHHHHHHHHHHCHCCHTTTHHCHHHHHHHHHHHHHHHHG----------CTSSHHHHHHHHHHHHHTT--TCH
T ss_pred             CCCCCeeehHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhcc----------ccCCHHHHHHHHHHHHhhc--ccc
Confidence              11233343344444333311       13467899999986621          1233333322223344444  345


Q ss_pred             CHHHHHHHHHhccccCCccCCCCCC
Q 026402          197 DKDLLGWWLCERQVKSGGLNGRPEK  221 (239)
Q Consensus       197 ~~~~~~~~L~~~Q~~~GGf~~~~~k  221 (239)
                      ..+++.+-|.+....+|+...++..
T Consensus       150 ~~~~~~~~L~~~a~~~~~~~~W~~~  174 (246)
T PF07678_consen  150 QASKLLNKLNSMATTEGGLRYWSSD  174 (246)
T ss_dssp             HHHHHHHHHHCHCEETTTTCEE-SS
T ss_pred             hHHHHHHHHHHhhhhccccCcccCC
Confidence            5677888888887777776655433

The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....

>COG1657 SqhC Squalene cyclase [Lipid metabolism]

Probab=98.39  E-value=4.6e-07  Score=81.88  Aligned_cols=177  Identities=20%  Similarity=0.184  Sum_probs=117.3

Q ss_pred             HHHHHHHHhccCCCCCCCCCCC--CCCchhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCC--------
Q 026402           55 EDVISWILKCQDESGGFAGNIG--HDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIW--------  124 (239)
Q Consensus        55 ~~~i~~l~~~q~~dGgf~~~~~--~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~--------  124 (239)
                      .+...|-...+...|||+....  ..++...|-.++..+....  +..+.++.++|+...|+..|||.....        
T Consensus       236 ~~~~~~~~~~~~~~g~W~f~~~~~~ypd~d~T~~~~~al~~~~--~~~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~  313 (517)
T COG1657         236 LKYADWAVKRKFSPGGWGFSNINTGYPDADDTAGVVRALIGVQ--SLPNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLR  313 (517)
T ss_pred             HHhhccccccccCCCccceeecccCCCCchhhhHHHHHHHhhc--chhhHHhhhhHhhhcccccCceeeeccccccHHHh
Confidence            3344444445556777776543  5678888888888776544  344577899999999999999874311        


Q ss_pred             -------C-CCCcc---hhHHHHhHHHhhccC-C---hhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHH
Q 026402          125 -------G-EVDTR---FSYIAICCLSILQRL-D---KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAI  189 (239)
Q Consensus       125 -------~-~~d~~---~ty~al~~l~~l~~~-~---~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~  189 (239)
                             + ..+..   -|-..+..|..++.- +   ...++++++||++.|.++|.|-...+. -..+.|.-++.+|..
T Consensus       314 ~L~~~~~~~~~~~s~adct~~~~~~l~a~~~yl~~~~~~~i~~a~e~LL~~Q~~~GsW~g~w~v-~~iY~~s~a~~~l~~  392 (517)
T COG1657         314 LLPPAEVKAMVDPSTADCTHRVVLALAALNAYLEAYDGQPIERALEWLLSDQEPDGSWYGRWGV-CYIYGTSGALSALAL  392 (517)
T ss_pred             hCCHhhccccccCCcccCCCccHHHHhhhhhccccccCCcccHHHhhhhhhccccCceeeEEEE-EEEEehhhhhhhhhc
Confidence                   0 01111   122233333333321 2   356899999999999999988655432 233446666677777


Q ss_pred             hCCCC--CCCHHHHHHHHHhccccCCccCCCCCCCCChhhhhhhhccC
Q 026402          190 AGALH--HVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGLLLLVGSFK  235 (239)
Q Consensus       190 l~~~~--~~~~~~~~~~L~~~Q~~~GGf~~~~~k~~D~c~s~~~~~~l  235 (239)
                      .+..+  ...+.+++.||..+|+++|||+..-..++|..|++= ..++
T Consensus       393 ~g~~~~~~~~v~~~~~~l~~~~~~~~Gw~e~~~~~~~~~~~~t-~~sl  439 (517)
T COG1657         393 VGETDENEVLVRKLISWLVSKQMPDGGWGEAKEAISDPVYTGT-ESSL  439 (517)
T ss_pred             cCccccchHHHHHHHHHhhhccccCCCcccccccccccccccc-cchh
Confidence            77543  234789999999999999999998888888877765 4443

>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family

Probab=98.01  E-value=0.0001  Score=62.39  Aligned_cols=86  Identities=20%  Similarity=0.240  Sum_probs=50.5

Q ss_pred             hHHHHHHHHHHhcCCCC-----CCCHHHHHHHHHhccCCCCCcccCCC-CC-CCcchhHH---HHhHHHhhccC------
Q 026402           82 LYTLSAVQVLALFDKVD-----ILDADKVSNYIVGLQNEDGSFSGDIW-GE-VDTRFSYI---AICCLSILQRL------  145 (239)
Q Consensus        82 ~~T~~al~~L~~l~~~~-----~~~~~~~~~~l~~~Q~~dGgf~~~~~-~~-~d~~~ty~---al~~l~~l~~~------  145 (239)
                      ..|...+..|..+-...     ....+++++||.+.|.++|||..... .. -...-||.   .+.++.+|..+      
T Consensus        44 ~aT~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~  123 (290)
T TIGR02474        44 GATVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDP  123 (290)
T ss_pred             ccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCC
Confidence            35666666665542211     11268899999999999999985421 11 00111221   23333333211      


Q ss_pred             ----C-------hhcHHHHHHHHHhccCCCCCc
Q 026402          146 ----D-------KINVDKAVEYIVSCKNLDGGF  167 (239)
Q Consensus       146 ----~-------~~~~~~~~~~l~~~Q~~dGGf  167 (239)
                          +       ...++|+++||+++|-++||+
T Consensus       124 ~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~  156 (290)
T TIGR02474       124 FDVFPDSTRTRAKTAVTKGIECILKTQVVQNGK  156 (290)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHhhcccCCc
Confidence                0       235789999999999888765

Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.

>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family

Probab=97.86  E-value=0.00019  Score=60.77  Aligned_cols=133  Identities=12%  Similarity=0.030  Sum_probs=74.5

Q ss_pred             hHHHHHHHHHHHHhhCC---CC--CcCHHHHHHHHHhccCCCCCCCCCCC----CCCch----hHHHHHHHHHHhcCC--
Q 026402           32 RLNGAYWGLTTLDILGK---LD--AVDEEDVISWILKCQDESGGFAGNIG----HDPHV----LYTLSAVQVLALFDK--   96 (239)
Q Consensus        32 ~~~~~y~al~~l~ll~~---~~--~~~~~~~i~~l~~~q~~dGgf~~~~~----~~~~~----~~T~~al~~L~~l~~--   96 (239)
                      |-..|+..+.-|+-+-.   ..  ....+++++||++.|+++|||+.+..    ...|+    ..+..++..|..+..  
T Consensus        42 DN~aT~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~  121 (290)
T TIGR02474        42 DNGATVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGK  121 (290)
T ss_pred             cCccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhcc
Confidence            44446665555554421   11  22578899999999999999997642    12222    123345555543311  


Q ss_pred             --CCC----------CCHHHHHHHHHhccCCCCCcccCCCC---------------CCC-cc--hhHHHHhHHHhhccCC
Q 026402           97 --VDI----------LDADKVSNYIVGLQNEDGSFSGDIWG---------------EVD-TR--FSYIAICCLSILQRLD  146 (239)
Q Consensus        97 --~~~----------~~~~~~~~~l~~~Q~~dGgf~~~~~~---------------~~d-~~--~ty~al~~l~~l~~~~  146 (239)
                        ...          ..++++++||.+.|.++||+.+.+..               |.. ++  -+-.++..|.-+..++
T Consensus       122 ~~~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps  201 (290)
T TIGR02474       122 DPFDVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQPNPS  201 (290)
T ss_pred             CCcccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCCCCC
Confidence              011          12589999999999999887654321               111 11  1222333322233333


Q ss_pred             h---hcHHHHHHHHHhccCCC
Q 026402          147 K---INVDKAVEYIVSCKNLD  164 (239)
Q Consensus       147 ~---~~~~~~~~~l~~~Q~~d  164 (239)
                      +   ..++.+++|+.+.+-++
T Consensus       202 ~~i~~ai~~A~~W~~~~~i~g  222 (290)
T TIGR02474       202 AEIKEAIRAGVAWFDTSRIRG  222 (290)
T ss_pred             HHHHHHHHHHHHHHHHCCCCC
Confidence            2   35788999999887543

Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.

>PLN02279 ent-kaur-16-ene synthase

Probab=97.25  E-value=0.0081  Score=57.99  Aligned_cols=203  Identities=13%  Similarity=0.080  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhccCCCCCCCCCCCCC----Cch
Q 026402            6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHD----PHV   81 (239)
Q Consensus         6 ~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~----~~~   81 (239)
                      .+.+++-|++..+.-. .      .+-...|.|+...=+. +........++++||+..|.+||+|+..+...    ..+
T Consensus        35 ~~~~~~~i~~~l~~~e-~------s~s~YDTAWvamv~~~-~~~~~p~Fp~~~~wil~nQ~~dGsWg~~~~~~~~~~D~l  106 (784)
T PLN02279         35 FEGTKERIKKMFDKVE-L------SVSSYDTAWVAMVPSP-NSQQAPLFPECVKWLLENQLEDGSWGLPHDHPLLVKDAL  106 (784)
T ss_pred             chhHHHHHHHHhccCc-C------CCchhhhHHHHhcccC-CCCCCCCChHHHHHHHhcCCCCCCCCCCCCCcchhHHhh
Confidence            3455566665554331 1      2334557776554443 32222257889999999999999999653322    345


Q ss_pred             hHHHHHHHHHHhcCCCCCCCHHHHHHHHHhccC----CC----CCcccC-CC-----C--CCCcchhHHHHhHHHhhccC
Q 026402           82 LYTLSAVQVLALFDKVDILDADKVSNYIVGLQN----ED----GSFSGD-IW-----G--EVDTRFSYIAICCLSILQRL  145 (239)
Q Consensus        82 ~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~----~d----Ggf~~~-~~-----~--~~d~~~ty~al~~l~~l~~~  145 (239)
                      .+|.++|.+|.--+. ....+++.+.||.+--.    .+    =||.-. |.     .  ..+..+--..+..+  +.+.
T Consensus       107 l~TlAcvlAL~~w~~-~~~~~~~gl~fi~~n~~~~~d~~~~~pvGfei~fP~ll~~a~~~gl~~~~~~~~l~~~--~~~r  183 (784)
T PLN02279        107 SSTLASILALKKWGV-GEEQINKGLQFIELNSASVTDEKQHKPIGFDIIFPGMIEYAKDLDLNLPLGSEVVDAM--LHKR  183 (784)
T ss_pred             HHHHHHHHHHHHHhc-CcccchhhHHHHHHHHHhhcccccCCCceEEEehHHHHHHHHHcCCCCCCChHHHHHH--HHhh
Confidence            799999988865433 12234666777764211    00    122210 00     0  00111111111111  1100


Q ss_pred             C--------------h----hcHHH---HHHH--HHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHH
Q 026402          146 D--------------K----INVDK---AVEY--IVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLG  202 (239)
Q Consensus       146 ~--------------~----~~~~~---~~~~--l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~  202 (239)
                      .              +    -..|.   .++|  ++..|..||+|...|      ..|.+++.     .   .. -+++.
T Consensus       184 ~~~l~~~~~~~~~~~~~~l~~s~Egl~~~~dw~~v~~~q~~~Gs~~~SP------saTAa~l~-----~---~~-~~~~~  248 (784)
T PLN02279        184 DLDLKSGGGSNTKGREAYLAYVSEGIGKLQDWEMVMKYQRKNGSLFNSP------STTAAAFS-----H---LQ-NAGCL  248 (784)
T ss_pred             hHHHhhcchhhcCCCcchHHHHHhhccccccHHHHHhhcCCCCCcccCc------HHHHHHHH-----c---cC-ChHHH
Confidence            0              0    00111   1233  567788999998665      33654442     1   11 37889


Q ss_pred             HHHHhccccCCccCCCCCC-CCChhhhhhhhccCC
Q 026402          203 WWLCERQVKSGGLNGRPEK-LPDVGLLLLVGSFKL  236 (239)
Q Consensus       203 ~~L~~~Q~~~GGf~~~~~k-~~D~c~s~~~~~~l~  236 (239)
                      +||..-+...||  +.|+. +.|....-|++.+|.
T Consensus       249 ~yL~~~~~~~~g--~vP~~yp~~~fe~l~lvd~L~  281 (784)
T PLN02279        249 RYLRSLLQKFGN--AVPTVYPLDQYARLSMVDTLE  281 (784)
T ss_pred             HHHHHHHHhcCC--CCCCCCcccHHHHhHHHHHHH
Confidence            999877665553  56755 677777778777664

>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]

Probab=97.18  E-value=0.0075  Score=61.52  Aligned_cols=86  Identities=15%  Similarity=0.224  Sum_probs=64.9

Q ss_pred             HHHHHHHHHhhCCCCCcCHHHHHHHHH-------hccCCCCCCCCCCC--CCCchhHHHHHHHHHHhcCCCCCCC---HH
Q 026402           36 AYWGLTTLDILGKLDAVDEEDVISWIL-------KCQDESGGFAGNIG--HDPHVLYTLSAVQVLALFDKVDILD---AD  103 (239)
Q Consensus        36 ~y~al~~l~ll~~~~~~~~~~~i~~l~-------~~q~~dGgf~~~~~--~~~~~~~T~~al~~L~~l~~~~~~~---~~  103 (239)
                      .++++.=|...++..+..+++++++|.       ..+++||.|+.+-.  ..+.++-|.+.+..+.....+-.+|   +.
T Consensus       948 ni~v~~YL~~t~q~~~~~k~ka~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWLtafvlr~f~~a~~~i~id~~~i~ 1027 (1436)
T KOG1366|consen  948 NIYVLKYLPKTNQLTPELKRKALKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWLTAFVLRVFSQAKEYIFIDPNVIT 1027 (1436)
T ss_pred             hhhHHHHHhhhhccChhHHHHHHHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHHHHHHHHHhhhccCceEecHHHHH
Confidence            566677777777665445667777764       45679999998865  5677889999998888776543333   67


Q ss_pred             HHHHHHHhccCCCCCccc
Q 026402          104 KVSNYIVGLQNEDGSFSG  121 (239)
Q Consensus       104 ~~~~~l~~~Q~~dGgf~~  121 (239)
                      +++.||...|.++|+|..
T Consensus      1028 ~a~~wl~~~Qk~~GsF~e 1045 (1436)
T KOG1366|consen 1028 QALNWLSQQQKENGSFKE 1045 (1436)
T ss_pred             HHHHHHHHhhccCceEec
Confidence            899999999999999974

>PLN02592 ent-copalyl diphosphate synthase

Probab=96.51  E-value=0.08  Score=51.25  Aligned_cols=56  Identities=14%  Similarity=0.115  Sum_probs=35.0

Q ss_pred             HHHHHHHHcccCCCCccccc--cccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhc
Q 026402            8 KHVKYIISVEKKKDSFESVV--MEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKC   64 (239)
Q Consensus         8 ~~~~yl~~~q~~dg~~~~~~--~~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~   64 (239)
                      +.++||..-|.+||+|+...  ....++-.|.-||.+|.-=+..+ ..+++++.||.+.
T Consensus       119 ~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~-~~i~rGl~fi~~n  176 (800)
T PLN02592        119 SSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSWNLHP-EKCEKGMSFFREN  176 (800)
T ss_pred             HHHHHHHHccCCCCCCCCCCCcchHHHHHhHHHHHHHHHHhhccH-HHHHHHHHHHHHH
Confidence            57899999999999997531  11233444555555554322222 2567888888763

>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]

Probab=96.06  E-value=0.095  Score=53.83  Aligned_cols=69  Identities=13%  Similarity=0.161  Sum_probs=53.4

Q ss_pred             HHHHHHHHHH-------cccCCCCcccccc--ccchHHHHHHHHHHHHhhCCCC---CcCHHHHHHHHHhccCCCCCCCC
Q 026402            6 ADKHVKYIIS-------VEKKKDSFESVVM--EHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILKCQDESGGFAG   73 (239)
Q Consensus         6 ~~~~~~yl~~-------~q~~dg~~~~~~~--~~~~~~~~y~al~~l~ll~~~~---~~~~~~~i~~l~~~q~~dGgf~~   73 (239)
                      .+++++||+.       .+++||+|..++.  .....|.|-|++..+.......   +.-..++++||...|.++|.|-.
T Consensus       966 k~ka~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWLtafvlr~f~~a~~~i~id~~~i~~a~~wl~~~Qk~~GsF~e 1045 (1436)
T KOG1366|consen  966 KRKALKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWLTAFVLRVFSQAKEYIFIDPNVITQALNWLSQQQKENGSFKE 1045 (1436)
T ss_pred             HHHHHHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHHHHHHHHHhhhccCceEecHHHHHHHHHHHHHhhccCceEec
Confidence            3567777764       4569999998876  5677888999999988886542   33577899999999999999875


Q ss_pred             C
Q 026402           74 N   74 (239)
Q Consensus        74 ~   74 (239)
                      .
T Consensus      1046 ~ 1046 (1436)
T KOG1366|consen 1046 V 1046 (1436)
T ss_pred             c
Confidence            3

>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4

Probab=95.88  E-value=0.028  Score=47.79  Aligned_cols=84  Identities=17%  Similarity=0.178  Sum_probs=44.4

Q ss_pred             CcchhHHHHhHHHhhccCC-----hhcHHHHHHHHHhccCCCCCccCC-CCC-CCchhhHH---HHHHHHHHhC----CC
Q 026402          128 DTRFSYIAICCLSILQRLD-----KINVDKAVEYIVSCKNLDGGFGCT-PGG-ESHSGQIF---CCVGALAIAG----AL  193 (239)
Q Consensus       128 d~~~ty~al~~l~~l~~~~-----~~~~~~~~~~l~~~Q~~dGGf~~~-~~~-~s~~~~T~---~al~aL~~l~----~~  193 (239)
                      |-..|+..+.-|.-+-...     .....|+++||++.|.++|||... |.. .-+...||   ..+..|.+|.    ..
T Consensus        37 DN~aT~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~  116 (289)
T PF09492_consen   37 DNDATTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGK  116 (289)
T ss_dssp             GGGTTHHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-
T ss_pred             cChhHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhc
Confidence            4456776666654443211     245789999999999999999764 321 12222232   1223333332    11


Q ss_pred             CCC-------------CHHHHHHHHHhcccc
Q 026402          194 HHV-------------DKDLLGWWLCERQVK  211 (239)
Q Consensus       194 ~~~-------------~~~~~~~~L~~~Q~~  211 (239)
                      .+.             .+++++++|+.+|..
T Consensus       117 ~~~~~v~~~~~~r~~~A~~kgi~ciL~tQi~  147 (289)
T PF09492_consen  117 GDFAFVDESLRARARAAVDKGIDCILKTQIR  147 (289)
T ss_dssp             TTSTTS-HHHHHHHHHHHHHHHHHHHHHS-E
T ss_pred             CCccccCHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            111             257789999999963

2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.

>PLN02279 ent-kaur-16-ene synthase

Probab=95.61  E-value=0.6  Score=45.41  Aligned_cols=55  Identities=13%  Similarity=0.097  Sum_probs=35.5

Q ss_pred             HHHHHHHHcccCCCCcccccc----ccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHh
Q 026402            8 KHVKYIISVEKKKDSFESVVM----EHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK   63 (239)
Q Consensus         8 ~~~~yl~~~q~~dg~~~~~~~----~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~   63 (239)
                      +.++||..-|.+||+|+....    ..-.+-.|--||.+|.-=+..+ ..+++.+.||.+
T Consensus        77 ~~~~wil~nQ~~dGsWg~~~~~~~~~~D~ll~TlAcvlAL~~w~~~~-~~~~~gl~fi~~  135 (784)
T PLN02279         77 ECVKWLLENQLEDGSWGLPHDHPLLVKDALSSTLASILALKKWGVGE-EQINKGLQFIEL  135 (784)
T ss_pred             HHHHHHHhcCCCCCCCCCCCCCcchhHHhhHHHHHHHHHHHHHhcCc-ccchhhHHHHHH
Confidence            578999999999999974311    1234445666666665444432 246777788764

>PLN02592 ent-copalyl diphosphate synthase

Probab=95.51  E-value=0.055  Score=52.32  Aligned_cols=97  Identities=13%  Similarity=0.213  Sum_probs=58.0

Q ss_pred             HHHHHHHHccc--CCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhccCCCCCCCCCCC--CCCchhH
Q 026402            8 KHVKYIISVEK--KKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIG--HDPHVLY   83 (239)
Q Consensus         8 ~~~~yl~~~q~--~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~--~~~~~~~   83 (239)
                      ..++-|+++.+  .||..      ++-...|.| |+....++........+.++||+..|.+||+|+....  ....+.+
T Consensus        76 ~~~~~ir~~l~~~~~g~~------S~S~YDTAW-VAmVp~~~g~~~p~FP~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~  148 (800)
T PLN02592         76 ERVKTVKSMLSSMEDGEI------SISAYDTAW-VALVEDINGSGTPQFPSSLQWIANNQLSDGSWGDAYLFSAHDRLIN  148 (800)
T ss_pred             HHHHHHHHHHhcccCCCc------CCcHHHhHH-HhhcccCCCCCCCCCHHHHHHHHHccCCCCCCCCCCCcchHHHHHh
Confidence            44555555444  33322      244556788 3332233222122567899999999999999997532  1234689


Q ss_pred             HHHHHHHHHhcCCCCCCCHHHHHHHHHhc
Q 026402           84 TLSAVQVLALFDKVDILDADKVSNYIVGL  112 (239)
Q Consensus        84 T~~al~~L~~l~~~~~~~~~~~~~~l~~~  112 (239)
                      |.+|+.+|.--+. ....+++++.||.+.
T Consensus       149 TLAcvlAL~~w~~-~~~~i~rGl~fi~~n  176 (800)
T PLN02592        149 TLACVVALKSWNL-HPEKCEKGMSFFREN  176 (800)
T ss_pred             HHHHHHHHHHhhc-cHHHHHHHHHHHHHH
Confidence            9999988864322 122357788888753

>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4

Probab=94.15  E-value=0.21  Score=42.59  Aligned_cols=136  Identities=15%  Similarity=0.128  Sum_probs=63.9

Q ss_pred             hHHHHHHHHHHHHhhCCC--C---CcCHHHHHHHHHhccCCCCCCCCCC----CCCCch----hHHHHHHHHHHhc----
Q 026402           32 RLNGAYWGLTTLDILGKL--D---AVDEEDVISWILKCQDESGGFAGNI----GHDPHV----LYTLSAVQVLALF----   94 (239)
Q Consensus        32 ~~~~~y~al~~l~ll~~~--~---~~~~~~~i~~l~~~q~~dGgf~~~~----~~~~~~----~~T~~al~~L~~l----   94 (239)
                      |-..|+-.+.-|+-+-..  +   ....+++++||++.|.++|||..+.    ++..|+    ..+.-.|..|...    
T Consensus        37 DN~aT~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~  116 (289)
T PF09492_consen   37 DNDATTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGK  116 (289)
T ss_dssp             GGGTTHHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-
T ss_pred             cChhHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhc
Confidence            333455555555443221  1   1257889999999999999999752    222222    1222233333322    


Q ss_pred             CCCCCCC----------HHHHHHHHHhccCCC----CCcccC-------C-----CCCCCcchhHHHHhHHHhhc--cCC
Q 026402           95 DKVDILD----------ADKVSNYIVGLQNED----GSFSGD-------I-----WGEVDTRFSYIAICCLSILQ--RLD  146 (239)
Q Consensus        95 ~~~~~~~----------~~~~~~~l~~~Q~~d----Ggf~~~-------~-----~~~~d~~~ty~al~~l~~l~--~~~  146 (239)
                      +....++          +++++++|.++|...    -+|..-       |     ...+-++..-++-.+..|+.  .++
T Consensus       117 ~~~~~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps  196 (289)
T PF09492_consen  117 GDFAFVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSGSESVGIVRFLMSLPNPS  196 (289)
T ss_dssp             TTSTTS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TTT-SB---STT--SSEECCCHHHHHHHHCTSSS--
T ss_pred             CCccccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcccccccccccCCCcccccccHHHHHHHHhcCCCCC
Confidence            1122222          588999999999843    335421       1     11122222222222223333  233


Q ss_pred             h---hcHHHHHHHHHhccCCCCCc
Q 026402          147 K---INVDKAVEYIVSCKNLDGGF  167 (239)
Q Consensus       147 ~---~~~~~~~~~l~~~Q~~dGGf  167 (239)
                      +   ..++.+++|+.+.+-++.-|
T Consensus       197 ~~v~~aI~~AvaWl~~~ki~g~~~  220 (289)
T PF09492_consen  197 PEVLAAIEAAVAWLESVKIPGKRW  220 (289)
T ss_dssp             HHHHHHHHHHHHHHCCTSEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhCcCCCcee
Confidence            2   35788999999876554433

2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.

>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins

Probab=92.98  E-value=4.3  Score=38.71  Aligned_cols=131  Identities=19%  Similarity=0.206  Sum_probs=87.1

Q ss_pred             cchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 026402           30 HLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYI  109 (239)
Q Consensus        30 ~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l  109 (239)
                      ..++..+||++.+|..||...+ +.+.+++++.+.-.+.         .+++...|+++.+...++.... -..++.+-+
T Consensus        46 ~~dLes~yyav~glk~Lg~~~~-~~~~~C~~~~~~~~~s---------~~~~e~lfya~~~~~~L~C~~~-~~~~~~~~l  114 (636)
T PF05817_consen   46 SSDLESAYYAVLGLKLLGIKVP-DSKAACKFLKKALDES---------SNDLESLFYAASASKALKCKVS-VSNEVKSLL  114 (636)
T ss_pred             cccHHHHHHHHhhHHHhCCCCC-ChhhHHHHHHHhhccc---------cchHHHHHHHHHHHhhcCCccc-CcHHHHHHH
Confidence            3667889999999999998754 5889999998864331         1457888999998888873222 134455555


Q ss_pred             HhccCCCCCcccCCCCCCCcchhHHHHhHHHhhcc-CChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHH
Q 026402          110 VGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQR-LDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALA  188 (239)
Q Consensus       110 ~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~-~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~  188 (239)
                      ...-++|          +++...|.++.++..++. ....+.++.++-|...+..|.          .+..+-+|+.+++
T Consensus       115 ~~~l~~~----------s~~~~iy~av~sl~~lg~~v~~~~~~~v~k~l~~~l~kdd----------s~~s~g~al~~aa  174 (636)
T PF05817_consen  115 KAALSED----------SSVSQIYYAVSSLKLLGLKVDEADSDEVVKALQASLKKDD----------SLLSLGYALHAAA  174 (636)
T ss_pred             HHHhcCC----------ccHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHhcccc----------cHHHHHHHHHHHH
Confidence            5544333          245558999999999975 223467778888877776533          2233444555555


Q ss_pred             HhC
Q 026402          189 IAG  191 (239)
Q Consensus       189 ~l~  191 (239)
                      .|+
T Consensus       175 ~L~  177 (636)
T PF05817_consen  175 QLS  177 (636)
T ss_pred             hhc
Confidence            554

The mammalian oligosaccharyltransferase (OST) is a protein complex that effects the cotranslational N-glycosylation of newly synthesised polypeptides, and is composed of at least four rough ER-specific membrane proteins: ribophorins I and II (RI and RII), OST48, and Dadl. The mechanism(s) by which the subunits of this complex are retained in the ER are not well understood [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane, 0008250 oligosaccharyltransferase complex

>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals

Probab=90.78  E-value=1.4  Score=38.35  Aligned_cols=117  Identities=18%  Similarity=0.142  Sum_probs=67.1

Q ss_pred             HHHHHHhhCCCCCcCHHHHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCCCCC----------CHHHHHHH
Q 026402           39 GLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDIL----------DADKVSNY  108 (239)
Q Consensus        39 al~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~----------~~~~~~~~  108 (239)
                      ++..|++--.... .....+.-|....+.+..|+    +.-++..+..|+.+|..+.+....          .++++++.
T Consensus       149 sL~vLALCv~~~~-~~~~~v~kL~~~~~~~~~~~----~~~sVDT~AmA~LALtCv~~~~~~~~~~~~~i~~~i~~~~~k  223 (326)
T PF01122_consen  149 SLGVLALCVHNKR-VSLSVVAKLLKAENHNFYHG----SQFSVDTGAMAVLALTCVKNSNPNGPELRRRIQQAIRSLVEK  223 (326)
T ss_dssp             HHHHHHHHHTTHH-HHHHHHHHHHHHHHSSTSS-----STCHHHHHHHHHHHHHHHHTTTSTTGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCC-cCHHHHHHHHHHHHhhcccC----CCCCccHHHHHHHHHHHHhccCcCcHhHHHHHHHHHHHHHHH
Confidence            5666665533222 23344555555555552222    123466666777777766442111          15778889


Q ss_pred             HHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCC---hhcHHHHHHHHHhccCCCCCcc
Q 026402          109 IVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLD---KINVDKAVEYIVSCKNLDGGFG  168 (239)
Q Consensus       109 l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~---~~~~~~~~~~l~~~Q~~dGGf~  168 (239)
                      |.+.|.+||-|+.       +.+|--|+.+|...+...   ..+-.++.+.++... ++|.|.
T Consensus       224 Il~~q~~~G~~GN-------iySTglAmQAL~~~~~~~~~~~w~C~k~~~~ll~~i-~~G~F~  278 (326)
T PF01122_consen  224 ILSQQKPNGLFGN-------IYSTGLAMQALSVSPSPPSESEWNCQKALDALLKEI-SQGAFQ  278 (326)
T ss_dssp             HHHTB-TTS-BSS-------TTTHHHHHHHHTT-SS-SSHHHHHHHHHHHHHHHHH-TTTTT-
T ss_pred             HHHhcCCCCcccc-------hhhHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHh-hcCCCC
Confidence            9999999999883       455666777766665522   235678889988743 489886

Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.

>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals

Probab=89.49  E-value=1.6  Score=37.89  Aligned_cols=109  Identities=18%  Similarity=0.249  Sum_probs=60.4

Q ss_pred             HHHHHHHHHhhCCCCCc----------CHHHHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCCCC---CCH
Q 026402           36 AYWGLTTLDILGKLDAV----------DEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDI---LDA  102 (239)
Q Consensus        36 ~y~al~~l~ll~~~~~~----------~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~---~~~  102 (239)
                      ..-|+.+|..+......          .++++++.|++.|.+||-||       ++++|--|+++|...+....   -+.
T Consensus       189 ~AmA~LALtCv~~~~~~~~~~~~~i~~~i~~~~~kIl~~q~~~G~~G-------NiySTglAmQAL~~~~~~~~~~~w~C  261 (326)
T PF01122_consen  189 GAMAVLALTCVKNSNPNGPELRRRIQQAIRSLVEKILSQQKPNGLFG-------NIYSTGLAMQALSVSPSPPSESEWNC  261 (326)
T ss_dssp             HHHHHHHHHHHHTTTSTTGGGHHHHHHHHHHHHHHHHHTB-TTS-BS-------STTTHHHHHHHHTT-SS-SSHHHHHH
T ss_pred             HHHHHHHHHHHhccCcCcHhHHHHHHHHHHHHHHHHHHhcCCCCccc-------chhhHHHHHHHHhcCCCCCcchhhHH
Confidence            55566667766553211          24557777888899999885       68999999999987765321   236


Q ss_pred             HHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhh-ccCChhcHHHHHHHHHhccCCCCCcc
Q 026402          103 DKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSIL-QRLDKINVDKAVEYIVSCKNLDGGFG  168 (239)
Q Consensus       103 ~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l-~~~~~~~~~~~~~~l~~~Q~~dGGf~  168 (239)
                      .++.+++.+. .++|.|..-         . .+..+|-.| |+ +..++..     .+|+.++|-+.
T Consensus       262 ~k~~~~ll~~-i~~G~F~nP---------~-a~aQiLPaL~gK-TYLDv~~-----~~C~~~~~~~~  311 (326)
T PF01122_consen  262 QKALDALLKE-ISQGAFQNP---------M-AIAQILPALNGK-TYLDVNS-----VDCSSPDGNLN  311 (326)
T ss_dssp             HHHHHHHHHH-HTTTTT-SH---------H-HHHHHHHHHTT---GGGGGS-------SSS--EE--
T ss_pred             HHHHHHHHHH-hhcCCCCCH---------H-HHHHHHHHHcCC-CccccCC-----CCCCCCCCccc
Confidence            7888888885 458988731         1 233444333 33 2223211     46888887765

Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	239
1dce_B	331	Crystal Structure Of Rab Geranylgeranyltransferase		5e-81
3pz1_B	330	Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig)		5e-81
2h6g_B	437	W102t Protein Farnesyltransferase Mutant Complexed		9e-22
2h6i_B	437	W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTAN		9e-22
1jcq_B	437	Crystal Structure Of Human Protein Farnesyltransfer		3e-21
2h6h_B	437	Y365f Protein Farnesyltransferase Mutant Complexed		3e-21
3euv_B	427	Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subu		4e-21
1n94_B	397	Aryl Tetrahydropyridine Inhbitors Of Farnesyltransf		1e-20
1ft2_B	401	Co-Crystal Structure Of Protein Farnesyltransferase		1e-20
1o1r_B	427	Structure Of Fpt Bound To Ggpp Length = 427		1e-20
1nl4_B	401	Crystal Structure Of Rat Farnesyl Transferase In Co		1e-20
1n95_B	402	Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranf		1e-20
1ft1_B	437	Crystal Structure Of Protein Farnesyltransferase At		1e-20
2zir_B	440	Crystal Structure Of Rat Protein Farnesyltransferas		2e-20
3pz4_B	426	Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subu		2e-20
1n4p_B	377	Protein Geranylgeranyltransferase Type-I Complexed		1e-18
3q73_B	520	Cryptococcus Neoformans Protein Farnesyltransferase		1e-07

>pdb|1DCE|B Chain B, Crystal Structure Of Rab Geranylgeranyltransferase From Rat Brain Length = 331

Iteration: 1
 Score =  296 bits (759), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 130/222 (58%), Positives = 173/222 (77%)
Query: 4   LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
           L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  +++E+++ +I  
Sbjct: 18  LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKS 77
Query: 64  CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
           CQ E GG + +IGHDPH+LYTLSAVQ+L L+D + +++ DKV  Y+  LQ EDGSF+GDI
Sbjct: 78  CQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDI 137
Query: 124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
           WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct: 138 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197
Query: 184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
            G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct: 198 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 239

>pdb|3PZ1|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In Complex With Bms3 Length = 330

Iteration: 1
 Score =  296 bits (759), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 130/222 (58%), Positives = 173/222 (77%)
Query: 4   LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
           L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  +++E+++ +I  
Sbjct: 17  LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKS 76
Query: 64  CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
           CQ E GG + +IGHDPH+LYTLSAVQ+L L+D + +++ DKV  Y+  LQ EDGSF+GDI
Sbjct: 77  CQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDI 136
Query: 124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
           WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct: 137 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 196
Query: 184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
            G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct: 197 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 238

>pdb|2H6G|B Chain B, W102t Protein Farnesyltransferase Mutant Complexed With A Geranylgeranylated Ddptasacvls Peptide Product At 1.85a Resolution Length = 437

Iteration: 1
 Score =  100 bits (248), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 73  LQREKHFHYLKRGLRQLTDAYE--CLDASRPTLCYWILHSLELLDEPIPQIVATDVCQFL 130
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  DI++ +K+  Y+  L+  DGS
Sbjct: 131 ELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGS 190
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 251 YTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 297

>pdb|2H6I|B Chain B, W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTANT COMPLEXED WITH A Geranylgeranylated Ddptasacvls Peptide Product At 3.0a Length = 437

Iteration: 1
 Score =  100 bits (248), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 73  LQREKHFHYLKRGLRQLTDAYE--CLDASRPTLCYWILHSLELLDEPIPQIVATDVCQFL 130
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  DI++ +K+  Y+  L+  DGS
Sbjct: 131 ELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGS 190
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 251 YTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 297

>pdb|1JCQ|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase Complexed With Farnesyl Diphosphate And The Peptidomimetic Inhibitor L-739,750 Length = 437

Iteration: 1
 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 73  LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 130
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  DI++ +K+  Y+  L+  DGS
Sbjct: 131 ELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGS 190
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 251 YTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 297

>pdb|2H6H|B Chain B, Y365f Protein Farnesyltransferase Mutant Complexed With A Farnesylated Ddptasacvls Peptide Product At 1.8a Length = 437

Iteration: 1
 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 73  LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 130
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  DI++ +K+  Y+  L+  DGS
Sbjct: 131 ELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGS 190
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 251 YTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 297

>pdb|3EUV|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit Delta C10, W102t, Y154t) In Complex With Biotingpp Length = 427

Iteration: 1
 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 73  LQREKHFHYLKRGLRQLTDAYE--CLDASRPTLCYWILHSLELLDEPIPQIVATDVCQFL 130
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  ++++ +K+  Y+  L+  DGS
Sbjct: 131 ELCQSPDGGFGGGPGQYPHLAPTTAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 190
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 251 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 297

>pdb|1N94|B Chain B, Aryl Tetrahydropyridine Inhbitors Of Farnesyltransferase: Glycine, Phenylalanine And Histidine Derivates Length = 397

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 52  LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 109
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  ++++ +K+  Y+  L+  DGS
Sbjct: 110 ELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 169
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 170 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 229
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 230 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 276

>pdb|1FT2|B Chain B, Co-Crystal Structure Of Protein Farnesyltransferase Complexed With A Farnesyl Diphosphate Substrate Length = 401

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 52  LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 109
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  ++++ +K+  Y+  L+  DGS
Sbjct: 110 ELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 169
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 170 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 229
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 230 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 276

>pdb|1O1R|B Chain B, Structure Of Fpt Bound To Ggpp Length = 427

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 73  LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 130
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  ++++ +K+  Y+  L+  DGS
Sbjct: 131 ELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 190
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 251 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 297

>pdb|1NL4|B Chain B, Crystal Structure Of Rat Farnesyl Transferase In Complex With A Potent Biphenyl Inhibitor Length = 401

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 51  LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 108
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  ++++ +K+  Y+  L+  DGS
Sbjct: 109 ELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 168
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 169 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 228
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 229 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 275

>pdb|1N95|B Chain B, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase: Glycine, Phenylalanine And Histidine Derivatives Length = 402

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 52  LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 109
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  ++++ +K+  Y+  L+  DGS
Sbjct: 110 ELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 169
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 170 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 229
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 230 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 276

>pdb|1FT1|B Chain B, Crystal Structure Of Protein Farnesyltransferase At 2.25 Angstroms Resolution Length = 437

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 73  LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 130
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  ++++ +K+  Y+  L+  DGS
Sbjct: 131 ELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 190
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 251 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 297

>pdb|2ZIR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase Complexed With A Benzofuran Inhibitor And Fpp Length = 440

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 76  LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 133
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  ++++ +K+  Y+  L+  DGS
Sbjct: 134 ELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 193
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 194 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 253
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 254 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 300

>pdb|3PZ4|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit Delta C10) In Complex With Bms3 And Lipid Substrate Fpp Length = 426

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 8/227 (3%)
Query: 4   LAADKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
           L  +KH  Y+   + +  D++E   ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 72  LQREKHFHYLKRGLRQLTDAYE--CLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 129
Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +  ++++ +K+  Y+  L+  DGS
Sbjct: 130 ELCQSPDGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYNVINREKLLQYLYSLKQPDGS 189
Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 190 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 249
Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPD 224
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D
Sbjct: 250 YTFCGLAALVILKKERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVD 296

>pdb|1N4P|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With Geranylgeranyl Diphosphate Length = 377

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 118/260 (45%), Gaps = 37/260 (14%)
Query: 7   DKHVKYIIS-VEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWI---- 61
           D+HV++    ++   + + S  +E  RL  A++ L+ LD+L  LD V+++D+I WI    
Sbjct: 23  DRHVRFFQRCLQVLPERYSS--LETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQ 80
Query: 62  -LKCQDESG----GFAG--------NIGHDP---------HVLYTLSAVQVLALF-DKVD 98
            L  +D S     GF G        N   +P         H+  T + +  L +  D + 
Sbjct: 81  VLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLS 140
Query: 99  ILDADKVSNYIVGLQNEDGSFSGDIWG-EVDTRFSYIAICCLSILQRLDKINVDKAVEYI 157
            +D +     +  LQ EDGSF     G E D RF Y A C   +L     +++ KA+ YI
Sbjct: 141 RVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYI 200
Query: 158 VSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV--DKDL--LGWWLCERQVKSG 213
               + D G     G ESH G  FC + +L + G L  V  +K+L  +  W   RQ    
Sbjct: 201 RRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QN 258
Query: 214 GLNGRPEKLPDVGLLLLVGS 233
           G +GRP K  D      VG+
Sbjct: 259 GYHGRPNKPVDTCYSFWVGA 278

>pdb|3Q73|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase, Apo Enzyme Length = 520

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 23/150 (15%)
Query: 37  YWGLTTLDILG-KLDAVDEEDVISWILKCQDESGGFAGNIGHD--PHVLYTLSAVQVLAL 93
           +W + +LD+LG  LD   ++ V+S +L      GGF G   +   PH+L T ++V  LA+
Sbjct: 93  FWTVHSLDLLGVALDQGTKDRVVSTLLHFLSPKGGFGGGPANSQIPHLLPTYASVCSLAI 152
Query: 94  FDK-------VDILDADK-VSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL 145
                      D+  A + +  + +  +  DG F     GEVD R +Y   C L +   L
Sbjct: 153 AGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTY---CLLVVATLL 209
Query: 146 DKI------NVDKAVEYIVSCKNLDGGFGC 169
           D I      NVDK   ++ +C+  +GGF C
Sbjct: 210 DIITPELLHNVDK---FVSACQTYEGGFAC 236

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	239
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	3e-89
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	2e-30
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	2e-16
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	4e-06
2h6f_B	437	Protein farnesyltransferase beta subunit; ftase, f	7e-82
2h6f_B	437	Protein farnesyltransferase beta subunit; ftase, f	2e-28
3q7a_B	520	Farnesyltransferase beta subunit; protein prenyltr	5e-78
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	1e-71
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	6e-35
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	1e-24
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	2e-10
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	4e-06
3dra_B	390	Geranylgeranyltransferase type I beta subunit; ger	2e-70
3dra_B	390	Geranylgeranyltransferase type I beta subunit; ger	1e-17
3dra_B	390	Geranylgeranyltransferase type I beta subunit; ger	3e-14
2sqc_A	631	Squalene-hopene cyclase; isomerase, triterpene cyc	8e-11
2sqc_A	631	Squalene-hopene cyclase; isomerase, triterpene cyc	1e-05
1w6k_A	732	Lanosterol synthase; cyclase, cholesterol, monotop	1e-05

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331

 Score =  266 bits (680), Expect = 3e-89
 Identities = 130/223 (58%), Positives = 173/223 (77%)

Query: 3   ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWIL 62
            L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  +++E+++ +I 
Sbjct: 17  TLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIK 76

Query: 63  KCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGD 122
            CQ E GG + +IGHDPH+LYTLSAVQ+L L+D + +++ DKV  Y+  LQ EDGSF+GD
Sbjct: 77  SCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGD 136

Query: 123 IWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFC 182
           IWGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+C
Sbjct: 137 IWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYC 196

Query: 183 CVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           C G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct: 197 CTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 239

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331

 Score =  114 bits (286), Expect = 2e-30
 Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 1/194 (0%)

Query: 7   DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQD 66
           DK V Y+ S++K+  SF   +   +    ++  + TL +LGKLDA++ E  I ++L C +
Sbjct: 117 DKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMN 176

Query: 67  ESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGE 126
             GGF    G + H          LA+  ++  +++D +  ++   Q   G  +G     
Sbjct: 177 FDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKL 236

Query: 127 VDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC-KNLDGGFGCTPGGESHSGQIFCCVG 185
            D  +S+  +  L I+ RL  I+ +K   +I++C     GGF   PG           + 
Sbjct: 237 PDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIA 296

Query: 186 ALAIAGALHHVDKD 199
            L++ G        
Sbjct: 297 GLSLLGEEQIKPVS 310

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331

 Score = 75.9 bits (186), Expect = 2e-16
 Identities = 24/131 (18%), Positives = 56/131 (42%)

Query: 95  DKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAV 154
           D  D L  +K ++YI    ++   +   +   +     Y  +  + ++ +L ++N ++ +
Sbjct: 13  DAPDTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEIL 72

Query: 155 EYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGG 214
            +I SC++  GG   + G + H       V  L +  ++H ++ D +  ++   Q + G 
Sbjct: 73  VFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGS 132

Query: 215 LNGRPEKLPDV 225
             G      D 
Sbjct: 133 FAGDIWGEIDT 143

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331

 Score = 45.9 bits (108), Expect = 4e-06
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 37  YWGLTTLDILGKLDAVDEEDVISWILKCQ-DESGGFAGNIGHDPHVLYTLSAVQVLALFD 95
           +W L +L I+G+L  +D E + S+IL CQ +E+GGFA   G      +TL  +  L+L  
Sbjct: 243 WWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLG 302

Query: 96  KVDILDADKVSN 107
           +  I     V  
Sbjct: 303 EEQIKPVSPVFC 314

>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Length = 437

 Score =  250 bits (639), Expect = 7e-82
 Identities = 68/228 (29%), Positives = 106/228 (46%), Gaps = 6/228 (2%)

Query: 3   ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGK-LDAVDEEDVISWI 61
            L  +KH  Y+    ++        ++  R    YW L +L++L + +  +   DV  ++
Sbjct: 72  VLQREKHFHYLKRGLRQLTD-AYECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFL 130

Query: 62  LKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDIL---DADKVSNYIVGLQNEDGS 118
             CQ   GGF G  G  PH+  T +AV  L +    +     + +K+  Y+  L+  DGS
Sbjct: 131 ELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGS 190

Query: 119 FSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSG 178
           F   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H G
Sbjct: 191 FLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGG 250

Query: 179 QIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDV 225
             FC + AL I      ++   L  W+  RQ++  GG  GR  KL D 
Sbjct: 251 YTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDG 298

>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Length = 437

 Score =  110 bits (275), Expect = 2e-28
 Identities = 44/200 (22%), Positives = 75/200 (37%), Gaps = 15/200 (7%)

Query: 7   DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQD 66
           +K ++Y+ S+++   SF   V   + +  AY   +   +   +     E    WI +CQ+
Sbjct: 175 EKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQN 234

Query: 67  ESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQ-NEDGSFSGDIWG 125
             GG  G  G + H  YT   +  L +  +   L+   +  ++   Q   +G F G    
Sbjct: 235 WEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNK 294

Query: 126 EVDTRFSYIAICCLSILQRLDK-------------INVDKAVEYI-VSCKNLDGGFGCTP 171
            VD  +S+     L +L R                 +     EYI + C+   GG    P
Sbjct: 295 LVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKP 354

Query: 172 GGESHSGQIFCCVGALAIAG 191
           G          C+  L+IA 
Sbjct: 355 GKSRDFYHTCYCLSGLSIAQ 374

>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3CX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Length = 520

 Score =  242 bits (619), Expect = 5e-78
 Identities = 57/274 (20%), Positives = 104/274 (37%), Gaps = 44/274 (16%)

Query: 3   ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILG-KLDAVDEEDVISWI 61
            L   +H +++ S   +    + V ++  R    +W + +LD+LG  LD   ++ V+S +
Sbjct: 60  GLRKQEHTQFLASSFFQLPG-KFVSLDASRPWLVFWTVHSLDLLGVALDQGTKDRVVSTL 118

Query: 62  LKCQDESGGFAGNIGHD--PHVLYTLSAVQVLALFDKVD--------ILDADKVSNYIVG 111
           L      GGF G   +   PH+L T ++V  LA+                   +  + + 
Sbjct: 119 LHFLSPKGGFGGGPANSQIPHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMR 178

Query: 112 LQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCT- 170
            +  DG F     GEVD R +Y  +   ++L  +    +    +++ +C+  +GGF C  
Sbjct: 179 CKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDIITPELLHNVDKFVSACQTYEGGFACAS 238

Query: 171 ----------------------PGGESHSGQIFCCVGALAIAGALH------HVDKDLLG 202
                                    E+H G   C + +  +  ++        +D +   
Sbjct: 239 FPFPSVVPSTSAFPTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAAL 298

Query: 203 WWLCERQVK---SGGLNGRPEKLPDVGLLLLVGS 233
            W   +Q +    GG  GR  KL D      VG 
Sbjct: 299 RWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGG 332

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Length = 377

 Score =  222 bits (566), Expect = 1e-71
 Identities = 65/257 (25%), Positives = 101/257 (39%), Gaps = 35/257 (13%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
             +   D+HV++     +         +E  RL  A++ L+ LD+L  LD V+++D+I W
Sbjct: 17  RLDFLRDRHVRFFQRCLQVLPE-RYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEW 75

Query: 61  ILKCQ--------------------------DESGGFAGNIGHDPHVLYTLSAVQVLALF 94
           I   Q                                  +     H+  T + +  L + 
Sbjct: 76  IYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIIL 135

Query: 95  -DKVDILDADKVSNYIVGLQNEDGSFSG-DIWGEVDTRFSYIAICCLSILQRLDKINVDK 152
            D +  +D +     +  LQ EDGSF       E D RF Y A C   +L     +++ K
Sbjct: 136 GDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKK 195

Query: 153 AVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV----DKDLLGWWLCER 208
           A+ YI    + D G     G ESH G  FC + +L + G L  V    + + +  W   R
Sbjct: 196 AISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMR 255

Query: 209 QVKSGGLNGRPEKLPDV 225
           Q    G +GRP K  D 
Sbjct: 256 Q--QNGYHGRPNKPVDT 270

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Length = 377

 Score =  127 bits (319), Expect = 6e-35
 Identities = 38/194 (19%), Positives = 72/194 (37%), Gaps = 5/194 (2%)

Query: 37  YWGLTTLDILG-KLDAVDEEDVISWILKCQDESGGFAGN-IGHDPHVLYTLSAVQVLALF 94
           Y GL+ L ILG  L  VD+E  ++ +   Q E G F     G +  + +   A  +  + 
Sbjct: 126 YTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYML 185

Query: 95  DKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAV 154
           +    +D  K  +YI    + D   +     E     ++  I  L ++ +L+++  +K +
Sbjct: 186 NNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKEL 245

Query: 155 EYIVS--CKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLL-GWWLCERQVK 211
             I          G+   P     +   F     L +     + + +    + L  +   
Sbjct: 246 NRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRL 305

Query: 212 SGGLNGRPEKLPDV 225
            GG    P+  PD 
Sbjct: 306 VGGFAKWPDSHPDA 319

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Length = 377

 Score = 99.1 bits (246), Expect = 1e-24
 Identities = 39/192 (20%), Positives = 76/192 (39%), Gaps = 10/192 (5%)

Query: 7   DKHVKYIISVEKKKDSFESVVMEHLR-LNGAYWGLTTLDILGKLDAVDEEDVISWILKCQ 65
           +  +  + +++ +  SF +V       +   Y       +L     +D +  IS+I +  
Sbjct: 145 EACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSM 204

Query: 66  DESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVG--LQNEDGSFSGDI 123
               G A   G + H   T   +  L L  K++ + ++K  N I    +  +   + G  
Sbjct: 205 SYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQQNGYHGRP 264

Query: 124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN-LDGGFGCTPGGES---HSGQ 179
              VDT +S+     L +L+     N +K   YI+S ++ L GGF   P       H+  
Sbjct: 265 NKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHA-- 322

Query: 180 IFCCVGALAIAG 191
            +  +  L++  
Sbjct: 323 -YFGICGLSLME 333

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Length = 377

 Score = 58.6 bits (141), Expect = 2e-10
 Identities = 29/150 (19%), Positives = 50/150 (33%), Gaps = 7/150 (4%)

Query: 7   DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAV----DEEDVISWIL 62
            K + YI       +               + G+ +L ++GKL+ V    +   +  W +
Sbjct: 194 KKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCI 253

Query: 63  KCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVG-LQNEDGSFSG 121
             Q    G+ G         Y+      L L       + +K  NYI+       G F+ 
Sbjct: 254 MRQQ--NGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAK 311

Query: 122 DIWGEVDTRFSYIAICCLSILQRLDKINVD 151
                 D   +Y  IC LS+++      V 
Sbjct: 312 WPDSHPDALHAYFGICGLSLMEESGICKVH 341

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Length = 377

 Score = 45.9 bits (108), Expect = 4e-06
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 1/73 (1%)

Query: 36  AYWGLTTLDILGKLDAVDEEDVISWILKC-QDESGGFAGNIGHDPHVLYTLSAVQVLALF 94
           ++W   TL +L      + E   ++IL       GGFA      P  L+    +  L+L 
Sbjct: 273 SFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLM 332

Query: 95  DKVDILDADKVSN 107
           ++  I       N
Sbjct: 333 EESGICKVHPALN 345

>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Length = 390

 Score =  220 bits (560), Expect = 2e-70
 Identities = 59/306 (19%), Positives = 101/306 (33%), Gaps = 76/306 (24%)

Query: 1   MGELAADKHVKYII-SVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEE--DV 57
           M +L  +KH K+    +     + +S   +  +L   Y+ L  L ++ K    ++E    
Sbjct: 1   MNQLLINKHEKFFNRCLIGLPSTAQS--EDSNKLAIIYFCLHGLQLIQKFQFTNQELIYY 58

Query: 58  ISWILKCQDE------------SGGFAGNIGHDPHVLYTLSAVQVLALF--DKVDILDAD 103
            ++I+                            P++  TL A+  L +       I++  
Sbjct: 59  RNFIINQFMIENNQIISFRSTHYFQKTNQKYDCPNLSSTLFALYNLLILKSPYHTIINRK 118

Query: 104 KVSNYIVGLQNEDGSFSG---------------DIWGEVDTRFSYIAICCLSILQRLDK- 147
           K+ N++   Q +DG   G                 +GE D R  Y+A+    +++  D  
Sbjct: 119 KIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLIRHLMKYDDNN 178

Query: 148 ------------INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHH 195
                       I++    ++I+   N++GGF  T   ESH G  FC + +L +      
Sbjct: 179 NNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLKLLN-YPL 237

Query: 196 VDKDLLGWWLCERQVKS----------------------------GGLNGRPEKLPDVGL 227
                   WL  RQV                              GG NGR  KL D   
Sbjct: 238 EKLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCY 297

Query: 228 LLLVGS 233
                 
Sbjct: 298 SWWCTG 303

>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Length = 390

 Score = 79.9 bits (196), Expect = 1e-17
 Identities = 42/250 (16%), Positives = 72/250 (28%), Gaps = 61/250 (24%)

Query: 37  YWGLTTLDILGK--LDAVDEEDVISWILKCQDESGGFAGNIGHDPHVL------------ 82
            + L  L IL       ++ + +++++ KCQ + G   G      +              
Sbjct: 98  LFALYNLLILKSPYHTIINRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEP 157

Query: 83  ---YTLSAVQVLALFDKVDIL-------------DADKVSNYIVGLQNEDGSFSGDIWGE 126
                  A+ +  L    D               D   +  +I+   N +G FS  I  E
Sbjct: 158 DLRVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDE 217

Query: 127 VDTRFSYIAICCLSILQRLDK---------------------------INVDKAVEYIVS 159
               F++ AI  L +L    +                                   Y   
Sbjct: 218 SHLGFTFCAIASLKLLNYPLEKLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYY 277

Query: 160 CKNLDGGFGCTPGGESHSGQIFCCVGALAI--AGALHHVDKDLL-GWWLCERQVKS-GGL 215
                GGF       S +   + C G+L       +  VD +    + L + Q +  GG 
Sbjct: 278 RNIDIGGFNGRENKLSDTCYSWWCTGSLYNIDVNFIKLVDLNKAEDYLLNKTQNQLFGGF 337

Query: 216 NGRPEKLPDV 225
              P+  PD 
Sbjct: 338 GRDPDSTPDP 347

>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Length = 390

 Score = 70.2 bits (171), Expect = 3e-14
 Identities = 31/190 (16%), Positives = 62/190 (32%), Gaps = 31/190 (16%)

Query: 33  LNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLA 92
           +                  +D   +  +IL   + +GGF+  I  + H+ +T  A+  L 
Sbjct: 172 MKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLK 231

Query: 93  LFDKVDI---------------------------LDADKVSNYIVGLQNEDGSFSGDIWG 125
           L +                                      NY      + G F+G    
Sbjct: 232 LLNYPLEKLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENK 291

Query: 126 EVDTRFSYIAICCLSILQ--RLDKINVDKAVEYIVSC--KNLDGGFGCTPGGESHSGQIF 181
             DT +S+     L  +    +  ++++KA +Y+++     L GGFG  P         +
Sbjct: 292 LSDTCYSWWCTGSLYNIDVNFIKLVDLNKAEDYLLNKTQNQLFGGFGRDPDSTPDPMHSY 351

Query: 182 CCVGALAIAG 191
             + +L++  
Sbjct: 352 LALASLSLWN 361

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631

 Score = 60.6 bits (146), Expect = 8e-11
 Identities = 36/193 (18%), Positives = 60/193 (31%), Gaps = 36/193 (18%)

Query: 55  EDVISWILKCQDESGGFA-------------------GNIGHDPHVLYTLSAVQVLALFD 95
                WI+  Q  +GG+                    G +   P    T   ++    F 
Sbjct: 401 TKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFG 460

Query: 96  KVDILDA-DKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSIL-QRLDKINVDKA 153
             D      +   Y+   Q  DGS+    WG      +   +  L  +     +  + KA
Sbjct: 461 YDDAWKVIRRAVEYLKREQKPDGSW-FGRWGVNYLYGTGAVVSALKAVGIDTREPYIQKA 519

Query: 154 VEYIVSCKNLDGGFG----------CTPGGESHSGQIFCCVGALAIAGALHH--VDKDLL 201
           ++++   +N DGG+G              G S   Q    + AL   G        + + 
Sbjct: 520 LDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAESEAARRGVQ 579

Query: 202 GWWLCERQVKSGG 214
             +L E Q   GG
Sbjct: 580 --YLVETQRPDGG 590

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631

 Score = 44.8 bits (105), Expect = 1e-05
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 2/90 (2%)

Query: 102 ADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCK 161
            D+   Y++  Q ++G + G +    +       +    IL R+D+  ++K   Y++  +
Sbjct: 15  LDRAVEYLLSCQKDEGYWWGPL--LSNVTMEAEYVLLCHILDRVDRDRMEKIRRYLLHEQ 72

Query: 162 NLDGGFGCTPGGESHSGQIFCCVGALAIAG 191
             DG +   PGG            AL   G
Sbjct: 73  REDGTWALYPGGPPDLDTTIEAYVALKYIG 102

>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Length = 732

 Score = 44.8 bits (105), Expect = 1e-05
 Identities = 35/205 (17%), Positives = 67/205 (32%), Gaps = 49/205 (23%)

Query: 55  EDVISWILKCQDESGGFA--------------------GNIGHDPHVLY-TLSAVQVLAL 93
            D ++ +L  ++  GGFA                    G+I  D   +  T + +Q L  
Sbjct: 484 CDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKY 543

Query: 94  FDKV--------DILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSIL--- 142
           F K               +   +    Q  DGS+ G  WG   T  ++  +   + +   
Sbjct: 544 FHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGS-WGVCFTYGTWFGLEAFACMGQT 602

Query: 143 --QRLDKINVDKAVEYIVSCKNLDGGFG----------CTPGGESHSGQIFCCVGALAIA 190
                    V +A ++++S +  DGG+G               +S        +  L   
Sbjct: 603 YRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMAV 662

Query: 191 GALHH--VDKDLLGWWLCERQVKSG 213
                   ++ +    L E+Q+ +G
Sbjct: 663 RHPDIEAQERGVR--CLLEKQLPNG 685

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	239
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	100.0
3q7a_B	520	Farnesyltransferase beta subunit; protein prenyltr	100.0
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	100.0
3dra_B	390	Geranylgeranyltransferase type I beta subunit; ger	100.0
2h6f_B	437	Protein farnesyltransferase beta subunit; ftase, f	100.0
3dss_B	331	Geranylgeranyl transferase type-2 subunit beta; pr	100.0
2h6f_B	437	Protein farnesyltransferase beta subunit; ftase, f	100.0
1n4q_B	377	Geranyltransferase type-I beta subunit; protein ge	100.0
3dra_B	390	Geranylgeranyltransferase type I beta subunit; ger	100.0
3q7a_B	520	Farnesyltransferase beta subunit; protein prenyltr	100.0
2sqc_A	631	Squalene-hopene cyclase; isomerase, triterpene cyc	99.95
1w6k_A	732	Lanosterol synthase; cyclase, cholesterol, monotop	99.94
1w6k_A	732	Lanosterol synthase; cyclase, cholesterol, monotop	99.87
2sqc_A	631	Squalene-hopene cyclase; isomerase, triterpene cyc	99.87
1qqf_A	277	Protein (complement C3DG); alpha-alpha barrel, imm	99.76
2wy7_A	310	Complement C3D fragment; immune system, immune res	99.74
1qqf_A	277	Protein (complement C3DG); alpha-alpha barrel, imm	99.68
2wy7_A	310	Complement C3D fragment; immune system, immune res	99.64
1hzf_A	367	Complement factor C4A; alpha-alpha 6 barrel, immun	99.61
1hzf_A	367	Complement factor C4A; alpha-alpha 6 barrel, immun	99.53
2hr0_B	915	Complement C3 alpha' chain; complement component C	99.36
2pn5_A	1325	TEP1R, thioester-containing protein I; FULL-length	99.34
2hr0_B	915	Complement C3 alpha' chain; complement component C	99.25
4acq_A	1451	Alpha-2-macroglobulin; hydrolase inhibitor, protei	99.19
2pn5_A	1325	TEP1R, thioester-containing protein I; FULL-length	99.09
1r76_A	408	Pectate lyase; A-helical structure; 2.65A {Azospir	99.09
1r76_A	408	Pectate lyase; A-helical structure; 2.65A {Azospir	99.06
4fxk_B	767	Complement C4-A alpha chain; immune system, proteo	98.95
1gxm_A	332	Pectate lyase; mechanism, elimination; 1.32A {Cell	98.94
2b39_A	1661	C3; thioester, immune defense, immune system; HET:	98.89
1gxm_A	332	Pectate lyase; mechanism, elimination; 1.32A {Cell	98.84
4acq_A	1451	Alpha-2-macroglobulin; hydrolase inhibitor, protei	98.68
3cu7_A	1676	Complement C5; Mg domain, inflammation, anaphylato	98.6
3prx_B	1642	Cobra venom factor; immune system, complement, imm	98.59
2bb6_A	414	TCII, TC II, transcobalamin II; alpha_6 - alpha_6	98.56
2b39_A	1661	C3; thioester, immune defense, immune system; HET:	98.29
4fxk_B	767	Complement C4-A alpha chain; immune system, proteo	98.25
2bb6_A	414	TCII, TC II, transcobalamin II; alpha_6 - alpha_6	98.19
3cu7_A	1676	Complement C5; Mg domain, inflammation, anaphylato	97.97
2pmv_A	399	Gastric intrinsic factor; cobalamin transport prot	97.95
2pmv_A	399	Gastric intrinsic factor; cobalamin transport prot	97.89
3prx_B	1642	Cobra venom factor; immune system, complement, imm	97.37
3sdr_A	817	Alpha-bisabolene synthase; lyase, terpene synthase	96.23
3sdr_A	817	Alpha-bisabolene synthase; lyase, terpene synthase	96.04
3s9v_A	785	Abietadiene synthase, chloroplastic; alpha bundle/	96.04
3p5p_A	764	Taxadiene synthase; class I and II terpene cyclase	95.98
3p5p_A	764	Taxadiene synthase; class I and II terpene cyclase	95.95
3pya_A	727	ENT-copalyl diphosphate synthase, chloroplastic; c	95.91
3pya_A	727	ENT-copalyl diphosphate synthase, chloroplastic; c	95.05
3s9v_A	785	Abietadiene synthase, chloroplastic; alpha bundle/	93.99
3k11_A	445	Putative glycosyl hydrolase; structural genomics,	83.09

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*

Probab=100.00  E-value=4.6e-59  Score=402.12  Aligned_cols=233  Identities=56%  Similarity=1.085  Sum_probs=222.7

Q ss_pred             cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhccCCCCCCCCCCCCCCchh
Q 026402            3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVL   82 (239)
Q Consensus         3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~   82 (239)
                      +|++++|++||+++.+....+.++..++++++.+||++.+|++|+..+.++++++++||++||++||||+..++.++|+.
T Consensus        17 ~l~~~~h~~y~~~~~~~~~~~~~~~~d~~r~~~~yw~l~~L~lLg~l~~~~r~~~i~~l~s~Q~~dGGF~g~~g~~~~l~   96 (331)
T 3dss_B           17 TLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVSASIGHDPHLL   96 (331)
T ss_dssp             SCCHHHHHHHHHHTTSSSCGGGSGGGGGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTSCBCHH
T ss_pred             hhhHHHHHHHHHHhccCCCCccceeccccHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhhhcCCCCCcCCCCCCCccHH
Confidence            78999999999998666666777888899999999999999999987777899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhccC
Q 026402           83 YTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN  162 (239)
Q Consensus        83 ~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~Q~  162 (239)
                      .||+|+++|.+++.++.++++++++||.++|++||||.+.+++++|+++||||+++|.+++.++.++++++++||++||+
T Consensus        97 ~Ty~Al~~L~~l~~~~~id~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~~ty~Al~~L~llg~~~~~~~~k~v~~L~s~Q~  176 (331)
T 3dss_B           97 YTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMN  176 (331)
T ss_dssp             HHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHTTBC
T ss_pred             HHHHHHHHHHHcCCccHHHHHHHHHHHhccCCCCCCEecccCCCCchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCc
Confidence            99999999999998888999999999999999999999998899999999999999999999888899999999999999


Q ss_pred             CCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccCCccCCCCCCCCChhhhhhhhccC
Q 026402          163 LDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGLLLLVGSFK  235 (239)
Q Consensus       163 ~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~~k~~D~c~s~~~~~~l  235 (239)
                      +||||+..|+.++|+.+||||+++|.++++.+.++++++++||+++|+++|||++||+|++|+|||||++++|
T Consensus       177 ~dGGfg~~pg~esh~~~T~~al~aL~llg~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~cys~w~l~~L  249 (331)
T 3dss_B          177 FDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASL  249 (331)
T ss_dssp             TTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHhCCCCCCcCCCCCCCCcchhHHHHHHHH
Confidence            9999999999999999999999999999998888999999999999999999999999999999999999987

>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*

Probab=100.00  E-value=6.1e-57  Score=401.81  Aligned_cols=232  Identities=25%  Similarity=0.425  Sum_probs=210.1

Q ss_pred             cccHHHHHHHHHHcccC-CCCccccccccchHHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHhccCCCCCCCCCC--CCC
Q 026402            3 ELAADKHVKYIISVEKK-KDSFESVVMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQDESGGFAGNI--GHD   78 (239)
Q Consensus         3 ~~~~~~~~~yl~~~q~~-dg~~~~~~~~~~~~~~~y~al~~l~ll~~~-~~~~~~~~i~~l~~~q~~dGgf~~~~--~~~   78 (239)
                      +|++++|++||+++... ...|  ...+.+++|.+||++.+|.+||.. +...++++++||++||++||||+..+  +..
T Consensus        60 ~L~~~~Hi~yl~~~L~~LP~~y--~~~Dasr~wl~Yw~l~aL~LLg~~ld~~~~~~~I~~Ils~Q~~dGGFgg~p~~~~~  137 (520)
T 3q7a_B           60 GLRKQEHTQFLASSFFQLPGKF--VSLDASRPWLVFWTVHSLDLLGVALDQGTKDRVVSTLLHFLSPKGGFGGGPANSQI  137 (520)
T ss_dssp             CCCHHHHHHHHHHHHSCBCGGG--GGGGGGHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTBCTTSSBCSSCTTTSC
T ss_pred             ccCHHHHHHHHHHHhhhCChhh--hhcccchHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCCCCCCCCCCCCCC
Confidence            69999999999998743 2333  345789999999999999999953 44578899999999999999999999  899


Q ss_pred             CchhHHHHHHHHHHhcCCC------CCCC--HHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcH
Q 026402           79 PHVLYTLSAVQVLALFDKV------DILD--ADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINV  150 (239)
Q Consensus        79 ~~~~~T~~al~~L~~l~~~------~~~~--~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~  150 (239)
                      +|+..||+||++|.+++..      +.++  ++++++||.++|++||||.+..+++.|+++||||++++.+++.++.+++
T Consensus       138 ~hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~slQ~~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~~~~~~v  217 (520)
T 3q7a_B          138 PHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDIITPELL  217 (520)
T ss_dssp             CCHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHHHBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCCCHHHH
T ss_pred             CcHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHHHhCCCCCEecCCCCCchHHHHHHHHHHHHHcCCCChHHH
Confidence            9999999999999999763      3567  8999999999999999999988899999999999999999999888899


Q ss_pred             HHHHHHHHhccCCCCCccC-----------------------CCCCCCchhhHHHHHHHHHHhCCCC------CCCHHHH
Q 026402          151 DKAVEYIVSCKNLDGGFGC-----------------------TPGGESHSGQIFCCVGALAIAGALH------HVDKDLL  201 (239)
Q Consensus       151 ~~~~~~l~~~Q~~dGGf~~-----------------------~~~~~s~~~~T~~al~aL~~l~~~~------~~~~~~~  201 (239)
                      +++++||++||++||||+.                       .|+.|+|+++|||||++|++|++++      ..+.+++
T Consensus       218 ~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp~~~~Pg~EaHgGyTfCalAaL~lL~~l~~~~~~~~~d~~~l  297 (520)
T 3q7a_B          218 HNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAA  297 (520)
T ss_dssp             TTHHHHHHTTBCTTSSBCSCEEEEC------------CCSEEEECSCCCHHHHHHHHHHHHHHHTSCCTTCSCCCCHHHH
T ss_pred             HHHHHHHHHhcCCCCCccCccccccccccccccccccccccCCCCCccchhHHHHHHHHHHHhccccccccccccCHHHH
Confidence            9999999999999999999                       6799999999999999999999863      5789999


Q ss_pred             HHHHHhccc---cCCccCCCCCCCCChhhhhhhhccCC
Q 026402          202 GWWLCERQV---KSGGLNGRPEKLPDVGLLLLVGSFKL  236 (239)
Q Consensus       202 ~~~L~~~Q~---~~GGf~~~~~k~~D~c~s~~~~~~l~  236 (239)
                      ++||+.||.   ++|||+|||||++|+|||||++++|.
T Consensus       298 ~~WL~~RQ~~~~e~GGF~GR~NKlvD~CYSfWvggsl~  335 (520)
T 3q7a_B          298 LRWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAP  335 (520)
T ss_dssp             HHHHHHTBCCGGGTTCBBSSTTSCBCTTHHHHTGGGHH
T ss_pred             HHHHHHhCCcccCCCcccCCCCCCCchhhhhHHHHHHH
Confidence            999999996   56999999999999999999999863

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*

Probab=100.00  E-value=5.6e-56  Score=387.63  Aligned_cols=230  Identities=30%  Similarity=0.522  Sum_probs=209.1

Q ss_pred             cccHHHHHHHHHHcccC-CCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhccC---------CCCCCC
Q 026402            3 ELAADKHVKYIISVEKK-KDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQD---------ESGGFA   72 (239)
Q Consensus         3 ~~~~~~~~~yl~~~q~~-dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~q~---------~dGgf~   72 (239)
                      +|++++|++||+++.+. +.+|  ...++++++.+||++.+|++|+..+.++++++++||+++|+         ++|||+
T Consensus        19 ~l~~~~H~~y~~~~l~~lp~~~--~~~d~~r~~~~yw~l~~L~lLg~l~~~~~~~~i~wils~Q~~p~~~~~~~~~GGF~   96 (377)
T 1n4q_B           19 DFLRDRHVRFFQRCLQVLPERY--SSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFR   96 (377)
T ss_dssp             CCCHHHHHHHHHHHHHEECGGG--GGGGGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTEECCCTTCTTGGGCEEC
T ss_pred             ccCHHHHHHHHHHHhhcCCccc--cccccchHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHhcCCccccccCCCCCccC
Confidence            57899999999998874 3444  44578999999999999999998666679999999999999         689999


Q ss_pred             CCCCC-----------------CCchhHHHHHHHHHHhcC-CCCCCCHHHHHHHHHhccCCCCCcccC-CCCCCCcchhH
Q 026402           73 GNIGH-----------------DPHVLYTLSAVQVLALFD-KVDILDADKVSNYIVGLQNEDGSFSGD-IWGEVDTRFSY  133 (239)
Q Consensus        73 ~~~~~-----------------~~~~~~T~~al~~L~~l~-~~~~~~~~~~~~~l~~~Q~~dGgf~~~-~~~~~d~~~ty  133 (239)
                      .++..                 .+|+..||+|+++|.+++ .++.++++++++||+++|++||||.+. .+++.|+++||
T Consensus        97 g~~~~~~p~~d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~~~~~id~~~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY  176 (377)
T 1n4q_B           97 GSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVY  176 (377)
T ss_dssp             SSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCSTTSCHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHH
T ss_pred             CCcccCCChhhhccccccccCCCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHhcCCCCCeeeccCCCcchhHHHH
Confidence            98753                 489999999999999997 467789999999999999999999987 57899999999


Q ss_pred             HHHhHHHhhccCChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCC----CHHHHHHHHHhcc
Q 026402          134 IAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV----DKDLLGWWLCERQ  209 (239)
Q Consensus       134 ~al~~l~~l~~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~----~~~~~~~~L~~~Q  209 (239)
                      ||++++.+++..+.++++++++||++||++||||+..|+.|||+.+||||+++|.++++.+..    +++++++||.+||
T Consensus       177 ~Al~~l~llg~~~~~~v~ka~~fL~scQn~DGGfGe~p~~ESh~g~T~cAlaaL~llg~~~~~~~~~~~~rli~wL~~rQ  256 (377)
T 1n4q_B          177 CASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ  256 (377)
T ss_dssp             HHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCcccccchhhHHHHHHHHHhcC
Confidence            999999999988888999999999999999999999999999999999999999999976532    6899999999999


Q ss_pred             ccCCccCCCCCCCCChhhhhhhhccCC
Q 026402          210 VKSGGLNGRPEKLPDVGLLLLVGSFKL  236 (239)
Q Consensus       210 ~~~GGf~~~~~k~~D~c~s~~~~~~l~  236 (239)
                        +|||+|||||++|+|||||++++|.
T Consensus       257 --~gGf~GR~nK~~D~CYSfWv~~~l~  281 (377)
T 1n4q_B          257 --QNGYHGRPNKPVDTCYSFWVGATLK  281 (377)
T ss_dssp             --SSSBCSSTTSCCCTTHHHHHHHHHH
T ss_pred             --CCCcCCCCCcchhHHHHHHHHHHHH
Confidence              8999999999999999999999873

>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=100.00  E-value=1.2e-55  Score=384.99  Aligned_cols=233  Identities=24%  Similarity=0.348  Sum_probs=206.1

Q ss_pred             CCcccHHHHHHHHHHcccC-CCCccccccccchHHHHHHHHHHHHhhCCC--CCcCHHHHHHHHHhccCCC----CCCCC
Q 026402            1 MGELAADKHVKYIISVEKK-KDSFESVVMEHLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQDES----GGFAG   73 (239)
Q Consensus         1 ~~~~~~~~~~~yl~~~q~~-dg~~~~~~~~~~~~~~~y~al~~l~ll~~~--~~~~~~~~i~~l~~~q~~d----Ggf~~   73 (239)
                      |.+|+++||++|++++.+. +..|.  ..++++++.+||++.+|++|+..  .+.++++.++||++||.++    |||+.
T Consensus         1 ~~~l~~~kHiky~~~~L~~Lp~~~~--s~D~~R~~l~Yw~l~~L~lLg~~~~~~~~~~~~i~~i~~~q~~~~~~~gGF~g   78 (390)
T 3dra_B            1 MNQLLINKHEKFFNRCLIGLPSTAQ--SEDSNKLAIIYFCLHGLQLIQKFQFTNQELIYYRNFIINQFMIENNQIISFRS   78 (390)
T ss_dssp             -CCCCHHHHHHHHHHHHHCCCGGGG--GGTTCHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHEEECSSCEEECS
T ss_pred             CccccHHHHHHHHHHHHHhCCcchh--hcchhhHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHhccccCCCCCcCC
Confidence            7789999999999987653 23333  34789999999999999999986  3446889999999998653    99999


Q ss_pred             CC-----C---CCCchhHHHHHHHHHHhcCCC--CCCCHHHHHHHHHhccC---C-CCCcccCC-----------CCCCC
Q 026402           74 NI-----G---HDPHVLYTLSAVQVLALFDKV--DILDADKVSNYIVGLQN---E-DGSFSGDI-----------WGEVD  128 (239)
Q Consensus        74 ~~-----~---~~~~~~~T~~al~~L~~l~~~--~~~~~~~~~~~l~~~Q~---~-dGgf~~~~-----------~~~~d  128 (239)
                      .+     +   ..+|+.+||+|+.+|.++++.  +.+|++++++||.++|+   + ||||...+           .++.|
T Consensus        79 ~~~~~~~g~~~~~~hl~~Ty~Al~~L~ilg~~~~~~vdr~~i~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg~~~~~ge~D  158 (390)
T 3dra_B           79 THYFQKTNQKYDCPNLSSTLFALYNLLILKSPYHTIINRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPD  158 (390)
T ss_dssp             SGGGGGSCTTTSCCBHHHHHHHHHHHHHTTCCGGGTCCHHHHHHHHHHHBCCSSTTTTCBCSEEEEETTTTEEEEESCCC
T ss_pred             CccCCCCCCccCcccHHHHHHHHHHHHHhCchhhccccHHHHHHHHHHHhCCCCCCCCceeeeccccccccccccCCcch
Confidence            85     4   579999999999999999874  77899999999999998   6 89999543           57999


Q ss_pred             cchhHHHHhHHHhhccCC-------------hhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCC
Q 026402          129 TRFSYIAICCLSILQRLD-------------KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHH  195 (239)
Q Consensus       129 ~~~ty~al~~l~~l~~~~-------------~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~  195 (239)
                      +|++|||++++.+++.+.             .++++++++||++||+.||||+..|+.|||+++|||||++|++|++. .
T Consensus       159 ~R~~YcA~~i~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~~p~~EsH~G~TfCalaaL~lL~~~-~  237 (390)
T 3dra_B          159 LRVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLKLLNYP-L  237 (390)
T ss_dssp             HHHHHHHHHHHHHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTCC-G
T ss_pred             HHHHHHHHHHHHHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCCCCCcccccchhHHHHHHHHHhCcc-c
Confidence            999999999999999876             57899999999999999999999999999999999999999999986 4


Q ss_pred             CCHHHHHHHHHhccc----------------------------cCCccCCCCCCCCChhhhhhhhccCC
Q 026402          196 VDKDLLGWWLCERQV----------------------------KSGGLNGRPEKLPDVGLLLLVGSFKL  236 (239)
Q Consensus       196 ~~~~~~~~~L~~~Q~----------------------------~~GGf~~~~~k~~D~c~s~~~~~~l~  236 (239)
                      .+++++++||++||.                            ++|||+|||||.+|+|||||++++|.
T Consensus       238 ~d~~~l~~WL~~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~nKl~D~CYS~Wv~~sL~  306 (390)
T 3dra_B          238 EKLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENKLSDTCYSWWCTGSLY  306 (390)
T ss_dssp             GGCHHHHHHHHTTBCCCCTTTCC------------CCTTCCGGGTTSBBSSTTCCBCTHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHcCccccccccccccccccccccccccccccccCCCccCCCCCccchhHHHHHHHHHH
Confidence            788999999999997                            57999999999999999999999873

>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...

Probab=100.00  E-value=2.3e-55  Score=390.38  Aligned_cols=231  Identities=31%  Similarity=0.526  Sum_probs=215.0

Q ss_pred             cccHHHHHHHHHHc-ccCCCCccccccccchHHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHhccCCCCCCCCCCCCCCc
Q 026402            3 ELAADKHVKYIISV-EKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL-DAVDEEDVISWILKCQDESGGFAGNIGHDPH   80 (239)
Q Consensus         3 ~~~~~~~~~yl~~~-q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~-~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~   80 (239)
                      ++++++|++||+++ |+.+|+|....  .++++.+||++.+|.+|+.. +...++++++||+++|++||||+.++...+|
T Consensus        72 ~l~~~~hi~~l~~~lq~~~gg~~a~D--~~r~~l~y~~l~aL~lLg~~~~~~~~~r~v~~l~s~Q~~dGGf~g~~~~~~~  149 (437)
T 2h6f_B           72 VLQREKHFHYLKRGLRQLTDAYECLD--ASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPH  149 (437)
T ss_dssp             CCCHHHHHHHHHHHTTEECGGGGGGT--TCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHBCTTSSBBSSTTCCBC
T ss_pred             cccHHHHHHHHHHcCCCCCCCccccc--CCCccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCCCcCCccCCCcc
Confidence            58899999999999 88999998653  45778899999999999964 3346889999999999999999999988999


Q ss_pred             hhHHHHHHHHHHhcCCC---CCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHH
Q 026402           81 VLYTLSAVQVLALFDKV---DILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYI  157 (239)
Q Consensus        81 ~~~T~~al~~L~~l~~~---~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l  157 (239)
                      +..|++|+.+|.+++..   +.++++++++||+++|++||||.+++++++|+++||+++++|.+++..+...++++++||
T Consensus       150 i~~T~~Al~aL~~lg~~~~~~~i~i~kav~~L~s~Q~~DGsf~~~~~Ge~d~~~ty~A~~~L~llg~~~~~~v~k~~~~L  229 (437)
T 2h6f_B          150 LAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWI  229 (437)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCCCTTTTTTHHHHH
T ss_pred             hhHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhCCCCCCeeecCCCCccchhHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            99999999999999863   678899999999999999999999988999999999999999999987777889999999


Q ss_pred             HhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccc-cCCccCCCCCCCCChhhhhhhhccC
Q 026402          158 VSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQV-KSGGLNGRPEKLPDVGLLLLVGSFK  235 (239)
Q Consensus       158 ~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~-~~GGf~~~~~k~~D~c~s~~~~~~l  235 (239)
                      ++||++||||+..|+.+||+.+|||||++|.++++.+..+++++++||++||. ++|||++||+|.+|+|||||++++|
T Consensus       230 ~s~Q~~DGGwg~~pg~eSh~~~T~~Al~aL~~lg~~~~~~~~rl~~wL~~rQ~~~~GGf~gRp~K~~D~cYSfw~~a~L  308 (437)
T 2h6f_B          230 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLL  308 (437)
T ss_dssp             HHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHTBCTTTCSBBSSTTSCBCTTHHHHTTTHH
T ss_pred             HHccCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCCCCCccCCCCCccchHHHHHHHHHH
Confidence            99999999999999999999999999999999999888899999999999998 7899999999999999999999986

>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*

Probab=100.00  E-value=3.4e-52  Score=359.23  Aligned_cols=233  Identities=21%  Similarity=0.314  Sum_probs=222.0

Q ss_pred             cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhccCCCCCCCCCCCCCCchh
Q 026402            3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVL   82 (239)
Q Consensus         3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~   82 (239)
                      +++++++++||+++|++||||.....+++++..||.|+.+|.+++..+.++++++++||.++|++||||+..+..++|+.
T Consensus        65 ~~~r~~~i~~l~s~Q~~dGGF~g~~g~~~~l~~Ty~Al~~L~~l~~~~~id~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~  144 (331)
T 3dss_B           65 RMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTR  144 (331)
T ss_dssp             GSCHHHHHHHHHHTBCTTSCBBSSTTSCBCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHH
T ss_pred             hhhHHHHHHHHhhhcCCCCCcCCCCCCCccHHHHHHHHHHHHHcCCccHHHHHHHHHHHhccCCCCCCEecccCCCCchH
Confidence            57899999999999999999998777789999999999999999876667899999999999999999999888899999


Q ss_pred             HHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhccC
Q 026402           83 YTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN  162 (239)
Q Consensus        83 ~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~Q~  162 (239)
                      .||+|+.+|.+++..+.++++++++||.++|++||||+++|+.++|+.+|||++++|.+++.++.++++++++||+++|+
T Consensus       145 ~ty~Al~~L~llg~~~~~~~~k~v~~L~s~Q~~dGGfg~~pg~esh~~~T~~al~aL~llg~~~~~~~~~~~~wL~~~Q~  224 (331)
T 3dss_B          145 FSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQL  224 (331)
T ss_dssp             HHHHHHHHHHHHTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBC
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCcCCCCcCCCCCCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHhCC
Confidence            99999999999998888899999999999999999999999999999999999999999999888899999999999999


Q ss_pred             CCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccC-CccCCCCCCCCChhhhhhhhccC
Q 026402          163 LDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKS-GGLNGRPEKLPDVGLLLLVGSFK  235 (239)
Q Consensus       163 ~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~-GGf~~~~~k~~D~c~s~~~~~~l  235 (239)
                      +||||+.+|++++|+++|||++++|.++++.+.++.+++++||++||+++ |||+.+|++.+|.+||||++++|
T Consensus       225 ~dGGf~gr~~k~~D~cys~w~l~~L~llg~~~~~~~~~~~~fil~cQ~~~~GGf~~~pg~~~d~~hT~~~l~~L  298 (331)
T 3dss_B          225 PSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGL  298 (331)
T ss_dssp             TTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTTCCBCSSTTSCCBHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCCCcchhHHHHHHHHHHcCCcchhhHHHHHHHHHHhcCCCCCCcCCCCCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999988899999999999999886 99999999999999999999876

>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...

Probab=100.00  E-value=2.1e-46  Score=332.88  Aligned_cols=232  Identities=19%  Similarity=0.250  Sum_probs=214.2

Q ss_pred             ccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhccCCCCCCCCCCCCCCc
Q 026402            4 LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGHDPH   80 (239)
Q Consensus         4 ~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~   80 (239)
                      .+++++++||.++|++||||.....+.+++..||.||.+|.++|..   +.++++++++||+++|++||||+..+..+++
T Consensus       121 ~~~~r~v~~l~s~Q~~dGGf~g~~~~~~~i~~T~~Al~aL~~lg~~~~~~~i~i~kav~~L~s~Q~~DGsf~~~~~Ge~d  200 (437)
T 2h6f_B          121 IVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVD  200 (437)
T ss_dssp             HHHHHHHHHHHHHBCTTSSBBSSTTCCBCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSSTTCCBS
T ss_pred             HHHHHHHHHHHHhCCCCCCcCCccCCCcchhHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhCCCCCCeeecCCCCcc
Confidence            4578999999999999999987666678999999999999999974   4568999999999999999999998888999


Q ss_pred             hhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhc
Q 026402           81 VLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSC  160 (239)
Q Consensus        81 ~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~  160 (239)
                      +..||+|+.+|.+++..+...++++++||.++|++||||+++|+++++..+||||+++|.+++..+.++++++++||+++
T Consensus       201 ~~~ty~A~~~L~llg~~~~~~v~k~~~~L~s~Q~~DGGwg~~pg~eSh~~~T~~Al~aL~~lg~~~~~~~~rl~~wL~~r  280 (437)
T 2h6f_B          201 VRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSR  280 (437)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHT
T ss_pred             chhHHHHHHHHHHhCCCChHHHHHHHHHHHHccCCCCCcCCCCCCCCCccHHHHHHHHHHHcCCCCcccHHHHHHHHHhc
Confidence            99999999999999887667789999999999999999999999999999999999999999998888999999999999


Q ss_pred             cC-CCCCccCCCCCCCchhhHHHHHHHHHHhCCC-------------CCCCHHHHHHHHHh-ccccCCccCCCCCCCCCh
Q 026402          161 KN-LDGGFGCTPGGESHSGQIFCCVGALAIAGAL-------------HHVDKDLLGWWLCE-RQVKSGGLNGRPEKLPDV  225 (239)
Q Consensus       161 Q~-~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~-------------~~~~~~~~~~~L~~-~Q~~~GGf~~~~~k~~D~  225 (239)
                      |. ++|||..+|++.+|++||||++++|.+|++.             ..+|.+++.+||+. +|+++|||+.+|++.+|.
T Consensus       281 Q~~~~GGf~gRp~K~~D~cYSfw~~a~L~lL~~~~~~~~~~~~~~~~~l~d~~~l~~yIL~~~Q~~~GGf~d~Pg~~~D~  360 (437)
T 2h6f_B          281 QMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRDF  360 (437)
T ss_dssp             BCTTTCSBBSSTTSCBCTTHHHHTTTHHHHHHHHHHHTTCTTCCSSCCSSCHHHHHHHHHHHSBCTTSCBCSSTTSCCCH
T ss_pred             CCCCCCCccCCCCCccchHHHHHHHHHHHHHhhhhhcccccccccccccCCHHHHHHHHHHHccCCCCCccCCCCCCCCH
Confidence            98 7899999999999999999999999999753             14789999999997 789999999999999999


Q ss_pred             hhhhhhhccC
Q 026402          226 GLLLLVGSFK  235 (239)
Q Consensus       226 c~s~~~~~~l  235 (239)
                      +|||+++++|
T Consensus       361 yHT~y~L~gL  370 (437)
T 2h6f_B          361 YHTCYCLSGL  370 (437)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999875

>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*

Probab=100.00  E-value=1.5e-44  Score=315.53  Aligned_cols=231  Identities=17%  Similarity=0.246  Sum_probs=211.9

Q ss_pred             cccHHHHHHHHHHccc---------CCCCcccccc-----------------ccchHHHHHHHHHHHHhhCCC-CCcCHH
Q 026402            3 ELAADKHVKYIISVEK---------KKDSFESVVM-----------------EHLRLNGAYWGLTTLDILGKL-DAVDEE   55 (239)
Q Consensus         3 ~~~~~~~~~yl~~~q~---------~dg~~~~~~~-----------------~~~~~~~~y~al~~l~ll~~~-~~~~~~   55 (239)
                      .++++++++||.++|+         ++|||..+..                 +++.+..||.||.+|.+++.. +.++++
T Consensus        66 ~~~~~~~i~wils~Q~~p~~~~~~~~~GGF~g~~~~~~p~~d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~~~~~id~~  145 (377)
T 1n4q_B           66 VVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKE  145 (377)
T ss_dssp             GSCHHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCSTTSCHH
T ss_pred             ccCHHHHHHHHHHhcCCccccccCCCCCccCCCcccCCChhhhccccccccCCCCCHHHHHHHHHHHHHhCcccchhhHH
Confidence            4679999999999999         5899975542                 247799999999999999953 457899


Q ss_pred             HHHHHHHhccCCCCCCCCC-CCCCCchhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHH
Q 026402           56 DVISWILKCQDESGGFAGN-IGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYI  134 (239)
Q Consensus        56 ~~i~~l~~~q~~dGgf~~~-~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~  134 (239)
                      ++++||+++|++||+|... ...+.++..||+|+.++.+++..+.++++++++||.+||+.||||+..|..+++..+|||
T Consensus       146 ~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~~~~~~v~ka~~fL~scQn~DGGfGe~p~~ESh~g~T~c  225 (377)
T 1n4q_B          146 ACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFC  225 (377)
T ss_dssp             HHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHH
T ss_pred             HHHHHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhHHHH
Confidence            9999999999999999986 567899999999999999999877889999999999999999999999999999999999


Q ss_pred             HHhHHHhhccCChh----cHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccc
Q 026402          135 AICCLSILQRLDKI----NVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQV  210 (239)
Q Consensus       135 al~~l~~l~~~~~~----~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~  210 (239)
                      |+++|.+++..+..    +++++++||.+.|  +|||.++|++.+|++|+||++++|.+|++.+.+|.+++.+||+.||+
T Consensus       226 AlaaL~llg~~~~~~~~~~~~rli~wL~~rQ--~gGf~GR~nK~~D~CYSfWv~~~l~iL~~~~~~d~~~l~~fil~cQ~  303 (377)
T 1n4q_B          226 GIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQD  303 (377)
T ss_dssp             HHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB--SSSBCSSTTSCCCTTHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBC
T ss_pred             HHHHHHHhcCcccccchhhHHHHHHHHHhcC--CCCcCCCCCcchhHHHHHHHHHHHHHhCCccccCHHHHHHHHHHHcC
Confidence            99999999976543    7899999999999  89999999999999999999999999998878999999999999999


Q ss_pred             c-CCccCCCCCCCCChhhhhhhhccC
Q 026402          211 K-SGGLNGRPEKLPDVGLLLLVGSFK  235 (239)
Q Consensus       211 ~-~GGf~~~~~k~~D~c~s~~~~~~l  235 (239)
                      + +|||+.+|++.+|.+|||+++++|
T Consensus       304 ~~~GGf~~~p~~~~D~~HT~~~LagL  329 (377)
T 1n4q_B          304 RLVGGFAKWPDSHPDALHAYFGICGL  329 (377)
T ss_dssp             TTTCSBCSSTTSCCBHHHHHHHHHHH
T ss_pred             CCCCCcCCCCCCCCCHHHHHHHHHHH
Confidence            8 999999999999999999999876

>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=100.00  E-value=1.9e-43  Score=308.07  Aligned_cols=231  Identities=22%  Similarity=0.292  Sum_probs=207.7

Q ss_pred             ccHHHHHHHHHHcccCC----CCccccc-----c---ccchHHHHHHHHHHHHhhCCC--CCcCHHHHHHHHHhccC---
Q 026402            4 LAADKHVKYIISVEKKK----DSFESVV-----M---EHLRLNGAYWGLTTLDILGKL--DAVDEEDVISWILKCQD---   66 (239)
Q Consensus         4 ~~~~~~~~yl~~~q~~d----g~~~~~~-----~---~~~~~~~~y~al~~l~ll~~~--~~~~~~~~i~~l~~~q~---   66 (239)
                      .++++.++||.++|.++    |||....     +   +.+.+..||+||.+|.+|+..  ..++++++++||.++|+   
T Consensus        53 ~~~~~~i~~i~~~q~~~~~~~gGF~g~~~~~~~g~~~~~~hl~~Ty~Al~~L~ilg~~~~~~vdr~~i~~~l~~lQ~~~~  132 (390)
T 3dra_B           53 QELIYYRNFIINQFMIENNQIISFRSTHYFQKTNQKYDCPNLSSTLFALYNLLILKSPYHTIINRKKIMNFLCKCQVKDG  132 (390)
T ss_dssp             HHHHHHHHHHHHHHEEECSSCEEECSSGGGGGSCTTTSCCBHHHHHHHHHHHHHTTCCGGGTCCHHHHHHHHHHHBCCSS
T ss_pred             HHHHHHHHHHHHHhccccCCCCCcCCCccCCCCCCccCcccHHHHHHHHHHHHHhCchhhccccHHHHHHHHHHHhCCCC
Confidence            35788999999998653    8887553     2   468899999999999999985  45799999999999999   


Q ss_pred             C-CCCCCCCC-----------CCCCchhHHHHHHHHHHhcCCCC-------------CCCHHHHHHHHHhccCCCCCccc
Q 026402           67 E-SGGFAGNI-----------GHDPHVLYTLSAVQVLALFDKVD-------------ILDADKVSNYIVGLQNEDGSFSG  121 (239)
Q Consensus        67 ~-dGgf~~~~-----------~~~~~~~~T~~al~~L~~l~~~~-------------~~~~~~~~~~l~~~Q~~dGgf~~  121 (239)
                      + ||||...+           +.+.++..||+|+.++.+|+...             .++++++++||.+||+.||||+.
T Consensus       133 ~~dGsF~~~~~~~~~dg~~~~~ge~D~R~~YcA~~i~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~  212 (390)
T 3dra_B          133 INKGGFVPTLYYNEENGDYKQYGEPDLRVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSS  212 (390)
T ss_dssp             TTTTCBCSEEEEETTTTEEEEESCCCHHHHHHHHHHHHHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCS
T ss_pred             CCCCceeeeccccccccccccCCcchHHHHHHHHHHHHHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCC
Confidence            6 99999654           57899999999999999998766             68899999999999999999999


Q ss_pred             CCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhccC----------------------------CCCCccCCCCC
Q 026402          122 DIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN----------------------------LDGGFGCTPGG  173 (239)
Q Consensus       122 ~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~Q~----------------------------~dGGf~~~~~~  173 (239)
                      .|+.|++..+||||+++|.+++.+ ..+.+++++||.++|.                            ++|||.++|++
T Consensus       213 ~p~~EsH~G~TfCalaaL~lL~~~-~~d~~~l~~WL~~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~nK  291 (390)
T 3dra_B          213 TIMDESHLGFTFCAIASLKLLNYP-LEKLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRENK  291 (390)
T ss_dssp             STTSCCCHHHHHHHHHHHHHTTCC-GGGCHHHHHHHHTTBCCCCTTTCC------------CCTTCCGGGTTSBBSSTTC
T ss_pred             CCCcccccchhHHHHHHHHHhCcc-cccHHHHHHHHHHcCccccccccccccccccccccccccccccccCCCccCCCCC
Confidence            999999999999999999999987 3688999999999997                            47999999999


Q ss_pred             CCchhhHHHHHHHHHHhCC--CCCCCHHHHHHHHHhc-ccc-CCccCCCCCCCCChhhhhhhhccC
Q 026402          174 ESHSGQIFCCVGALAIAGA--LHHVDKDLLGWWLCER-QVK-SGGLNGRPEKLPDVGLLLLVGSFK  235 (239)
Q Consensus       174 ~s~~~~T~~al~aL~~l~~--~~~~~~~~~~~~L~~~-Q~~-~GGf~~~~~k~~D~c~s~~~~~~l  235 (239)
                      .+|++|+||++++|.+|+.  .+.+|.+++.+||+.| |.+ .|||+.+|++.+|.+|||.++++|
T Consensus       292 l~D~CYS~Wv~~sL~iL~~~~~~l~d~~~l~~yiL~c~Q~~~~GGf~d~Pg~~pD~yHT~~gLagL  357 (390)
T 3dra_B          292 LSDTCYSWWCTGSLYNIDVNFIKLVDLNKAEDYLLNKTQNQLFGGFGRDPDSTPDPMHSYLALASL  357 (390)
T ss_dssp             CBCTHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHTTBCTTTCSBCSSTTSCCCHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHhccccccccCHHHHHHHHHHhccCCCCCCcCCCCCCCCchHHHHHHHHHH
Confidence            9999999999999999994  4678999999999998 565 899999999999999999999876

>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*

Probab=100.00  E-value=1.3e-43  Score=316.17  Aligned_cols=232  Identities=19%  Similarity=0.227  Sum_probs=210.3

Q ss_pred             ccHHHHHHHHHHcccCCCCccccc--cccchHHHHHHHHHHHHhhCCCC------CcC--HHHHHHHHHhccCCCCCCCC
Q 026402            4 LAADKHVKYIISVEKKKDSFESVV--MEHLRLNGAYWGLTTLDILGKLD------AVD--EEDVISWILKCQDESGGFAG   73 (239)
Q Consensus         4 ~~~~~~~~yl~~~q~~dg~~~~~~--~~~~~~~~~y~al~~l~ll~~~~------~~~--~~~~i~~l~~~q~~dGgf~~   73 (239)
                      .+++++++||.++|+++|||..+.  .+.+.+..||.||.+|.+++...      .++  ++++++||+++|++||+|..
T Consensus       109 ~~~~~~I~~Ils~Q~~dGGFgg~p~~~~~~hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~slQ~~DGSF~g  188 (520)
T 3q7a_B          109 GTKDRVVSTLLHFLSPKGGFGGGPANSQIPHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVV  188 (520)
T ss_dssp             HHHHHHHHHHHTTBCTTSSBCSSCTTTSCCCHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHHHBCTTSCBBS
T ss_pred             HHHHHHHHHHHHHcCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHHHhCCCCCEec
Confidence            467899999999999999999887  78899999999999999999742      245  88999999999999999998


Q ss_pred             CCCCCCchhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCccc-----------------------CCCCCCCcc
Q 026402           74 NIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSG-----------------------DIWGEVDTR  130 (239)
Q Consensus        74 ~~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~-----------------------~~~~~~d~~  130 (239)
                      ....+.++..||+|+.+|.+++..+..+++++++||.+||+.||||+.                       .|+.|+|..
T Consensus       189 ~~wGe~Dir~TY~Al~~L~lLg~~~~~~v~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp~~~~Pg~EaHgG  268 (520)
T 3q7a_B          189 CEGGEVDVRGTYCLLVVATLLDIITPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMAEAHGG  268 (520)
T ss_dssp             STTCCBCHHHHHHHHHHHHHHTCCCHHHHTTHHHHHHTTBCTTSSBCSCEEEEC------------CCSEEEECSCCCHH
T ss_pred             CCCCCchHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCCccCccccccccccccccccccccccCCCCCccchh
Confidence            877789999999999999999987777889999999999999999998                       568899999


Q ss_pred             hhHHHHhHHHhhccC------ChhcHHHHHHHHHhccC---CCCCccCCCCCCCchhhHHHHHHHHHHhCCC--------
Q 026402          131 FSYIAICCLSILQRL------DKINVDKAVEYIVSCKN---LDGGFGCTPGGESHSGQIFCCVGALAIAGAL--------  193 (239)
Q Consensus       131 ~ty~al~~l~~l~~~------~~~~~~~~~~~l~~~Q~---~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~--------  193 (239)
                      +|||++++|.+++.+      ...+.+++++||.++|.   ++|||.+++++.+|++|+||+.++|.+|+..        
T Consensus       269 yTfCalAaL~lL~~l~~~~~~~~~d~~~l~~WL~~RQ~~~~e~GGF~GR~NKlvD~CYSfWvggsl~iL~~~~~~~~~~~  348 (520)
T 3q7a_B          269 YTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRGRTNKLVDGCYSWWVGGGAPVAEELVRREKSRK  348 (520)
T ss_dssp             HHHHHHHHHHHHHTSCCTTCSCCCCHHHHHHHHHHTBCCGGGTTCBBSSTTSCBCTTHHHHTGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccccccccCHHHHHHHHHHhCCcccCCCcccCCCCCCCchhhhhHHHHHHHHHHHHhhcccccc
Confidence            999999999999986      35789999999999996   4699999999999999999999999998753        


Q ss_pred             ------------------------CCCCHHHHHHHHH-hccccC---CccCCCCCCCCChhhhhhhhccC
Q 026402          194 ------------------------HHVDKDLLGWWLC-ERQVKS---GGLNGRPEKLPDVGLLLLVGSFK  235 (239)
Q Consensus       194 ------------------------~~~~~~~~~~~L~-~~Q~~~---GGf~~~~~k~~D~c~s~~~~~~l  235 (239)
                                              ..+|.+++.+||+ .||.+.   |||+.+|+|.+|.+|||++++.|
T Consensus       349 ~~~~~~~~~~~~~~~~w~~~~~~~~l~d~~~L~~yIL~~~Q~~~~~~GGf~DkPg~~pD~yHT~y~LaGL  418 (520)
T 3q7a_B          349 VKKSRIEVFEEEKEGDWEDVPPIPPIFNRVALQEFTLVAAQQDPGSTGGLRDKPGKRPDQYHTCNNLSGL  418 (520)
T ss_dssp             C---------------------CCCSSCHHHHHHHHHHTTBCCTTSSCCBCSSTTSCCCHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccCHHHHHHHHHHHccCCCCCCCCCCCCCCCCcchhHHHHHHHHH
Confidence                                    2368899999998 589887   99999999999999999999865

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*

Probab=99.95  E-value=1.8e-26  Score=214.80  Aligned_cols=219  Identities=19%  Similarity=0.202  Sum_probs=168.6

Q ss_pred             HHHHHHHHHHcccCC-CC------------ccccc--cccchHHHHHHHHHHHHhhCCCC----CcCHHHHHHHHHhccC
Q 026402            6 ADKHVKYIISVEKKK-DS------------FESVV--MEHLRLNGAYWGLTTLDILGKLD----AVDEEDVISWILKCQD   66 (239)
Q Consensus         6 ~~~~~~yl~~~q~~d-g~------------~~~~~--~~~~~~~~~y~al~~l~ll~~~~----~~~~~~~i~~l~~~q~   66 (239)
                      ++|+++||++.|..+ |.            |....  ...++++.|.+++.+|..++..+    ....+++++||+++|+
T Consensus       333 ~~ka~~~L~~~q~~~~g~~~~~~~~~s~GgW~f~~~~~~~p~v~dTA~al~AL~~~~~~~~~~~~~~l~~a~~wLls~Q~  412 (631)
T 2sqc_A          333 LVKAGEWLLDRQITVPGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQS  412 (631)
T ss_dssp             HHHHHHHHHHTCCCSCCGGGGTCTTSCCCCBCSSSSCTTCCBHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHhcCCCCCChhhhcCCCCCCCCccccCCCCCCchHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHhhcC
Confidence            679999999998643 33            32211  12367899999999999998742    1257789999999999


Q ss_pred             CCCCCCCCCC-------------------CCCchhHHHHHHHHHHhcCCC-CCCCHHHHHHHHHhccCCCCCcccCCCCC
Q 026402           67 ESGGFAGNIG-------------------HDPHVLYTLSAVQVLALFDKV-DILDADKVSNYIVGLQNEDGSFSGDIWGE  126 (239)
Q Consensus        67 ~dGgf~~~~~-------------------~~~~~~~T~~al~~L~~l~~~-~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~  126 (239)
                      +||||+.++.                   ..+++..|..++.+|..++.. ....++++++||.++|++||||.+.+   
T Consensus       413 ~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~vl~aL~~~g~~~~~~~i~rai~~L~~~Q~~DGsw~g~w---  489 (631)
T 2sqc_A          413 SNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRW---  489 (631)
T ss_dssp             TTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHCCTTSCCCCSS---
T ss_pred             CCCCCCccCCCCccccccccccccCCcccCCCCchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCCCCCCCCC---
Confidence            9999976532                   126778999999999888642 22347899999999999999997654   


Q ss_pred             CCcchhHHHHhHHHhhccC----ChhcHHHHHHHHHhccCCCCCccCCC----------CCCCchhhHHHHHHHHHHhCC
Q 026402          127 VDTRFSYIAICCLSILQRL----DKINVDKAVEYIVSCKNLDGGFGCTP----------GGESHSGQIFCCVGALAIAGA  192 (239)
Q Consensus       127 ~d~~~ty~al~~l~~l~~~----~~~~~~~~~~~l~~~Q~~dGGf~~~~----------~~~s~~~~T~~al~aL~~l~~  192 (239)
                       +++++|++..++..|...    ....++++++||+++|++||||+..+          +.++++..|+|||.+|..++.
T Consensus       490 -g~~~~y~Ta~~l~aL~~~g~~~~~~~i~rav~~L~s~Q~~DGgWg~~~~sy~~~~~~~~~~s~v~~Ta~ALlaL~~ag~  568 (631)
T 2sqc_A          490 -GVNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGR  568 (631)
T ss_dssp             -BSSHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHTTC
T ss_pred             -CCCchHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhCcCCCCcCCccccccccccCCCCCCCHHHHHHHHHHHHHcCC
Confidence             355677655555444332    24578999999999999999997643          457899999999999999987


Q ss_pred             CCCCCHHHHHHHHHhccccCCccCCCCCC---CCChhhh
Q 026402          193 LHHVDKDLLGWWLCERQVKSGGLNGRPEK---LPDVGLL  228 (239)
Q Consensus       193 ~~~~~~~~~~~~L~~~Q~~~GGf~~~~~k---~~D~c~s  228 (239)
                      .+...++++++||.++|+++|||......   .+..||.
T Consensus       569 ~~~~~i~rav~wL~~~Q~~dGgw~~~~~tg~gf~~~~yl  607 (631)
T 2sqc_A          569 AESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYL  607 (631)
T ss_dssp             SSSHHHHHHHHHHHHHCCTTSCCCCCSCCEEEETTTEEE
T ss_pred             CChHHHHHHHHHHHhccCCCCCcCCCCccccccccccee
Confidence            65556899999999999999999987654   5677765

>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*

Probab=99.94  E-value=3.8e-26  Score=215.12  Aligned_cols=221  Identities=16%  Similarity=0.152  Sum_probs=170.5

Q ss_pred             HHHHHHHHHHcccCC--------------CCcccccc--ccchHHHHHHHHHHHHhhCCC--------CCcCHHHHHHHH
Q 026402            6 ADKHVKYIISVEKKK--------------DSFESVVM--EHLRLNGAYWGLTTLDILGKL--------DAVDEEDVISWI   61 (239)
Q Consensus         6 ~~~~~~yl~~~q~~d--------------g~~~~~~~--~~~~~~~~y~al~~l~ll~~~--------~~~~~~~~i~~l   61 (239)
                      ++++++||++.|.++              |+|.....  ..+++..|.+++.+|..+...        ....++++++||
T Consensus       411 l~ka~~~L~~~Q~~~~~~d~~~~~r~~~~GGW~f~~~~~~~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wL  490 (732)
T 1w6k_A          411 LQKAHEFLRLSQVPDNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVL  490 (732)
T ss_dssp             HHHHHHHHHHHSCCCCCTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccCCcccccccCCCCCeecCCCCCCCCCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHH
Confidence            479999999999755              88875432  246888899999999877421        122468899999


Q ss_pred             HhccCCCCCCCCCCC---------------------CCCchhHHHHHHHHHHhcCCC----C----CCCHHHHHHHHHhc
Q 026402           62 LKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKV----D----ILDADKVSNYIVGL  112 (239)
Q Consensus        62 ~~~q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~----~----~~~~~~~~~~l~~~  112 (239)
                      +++|++||||+.+..                     ..+++..|.+++.+|..++..    .    ...++++++||.++
T Consensus       491 ls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~~  570 (732)
T 1w6k_A          491 LNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQ  570 (732)
T ss_dssp             HTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhh
Confidence            999999999975432                     124667888999988876531    1    12378999999999


Q ss_pred             cCCCCCcccCCCCCCCcchhHHHHhHHHhhccCC-h----hcHHHHHHHHHhccCCCCCccCC----------CCCCCch
Q 026402          113 QNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLD-K----INVDKAVEYIVSCKNLDGGFGCT----------PGGESHS  177 (239)
Q Consensus       113 Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~-~----~~~~~~~~~l~~~Q~~dGGf~~~----------~~~~s~~  177 (239)
                      |++||||.+.++ ..++..|++++.+|..++... .    ..++++++||+++|++||||+..          ++.++++
T Consensus       571 Q~~DGsW~g~wg-~~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y~~~~~s~v  649 (732)
T 1w6k_A          571 QRADGSWEGSWG-VCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQI  649 (732)
T ss_dssp             SCTTSCCCCSSB-SSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCH
T ss_pred             cCCCCCccCcCC-CccchHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHhcccCCCCCCCCccccccccCCCCCCCH
Confidence            999999987653 234455667888888887643 1    46899999999999999999864          3557899


Q ss_pred             hhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccCCccCCCC--CCCCChhh
Q 026402          178 GQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRP--EKLPDVGL  227 (239)
Q Consensus       178 ~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~--~k~~D~c~  227 (239)
                      ..|.||+.+|..++..+..+++++++||.++|+++|||...+  +..++.||
T Consensus       650 ~~TAwALlALl~ag~~~~~~i~r~v~wL~~~Q~~~Ggf~~~~~~g~f~~~~~  701 (732)
T 1w6k_A          650 HNTCWAMMGLMAVRHPDIEAQERGVRCLLEKQLPNGDWPQENIAGVFNKSCA  701 (732)
T ss_dssp             HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCTTSCCCCCSCCEEETTTEE
T ss_pred             HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCCCccCCcccccccchhh
Confidence            999999999988887655568899999999999999999665  33566776

>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*

Probab=99.87  E-value=2e-21  Score=183.00  Aligned_cols=228  Identities=13%  Similarity=0.089  Sum_probs=164.6

Q ss_pred             HHHHHHHHHc--ccCCCCccccccccchHHHHHHHHHHHHhhCCCC----CcCHHHHHHHHHhccCCC------------
Q 026402            7 DKHVKYIISV--EKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD----AVDEEDVISWILKCQDES------------   68 (239)
Q Consensus         7 ~~~~~yl~~~--q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~----~~~~~~~i~~l~~~q~~d------------   68 (239)
                      .+|++.|.+.  ..+||.+. ..-..+.++.|-+++.+|.-.|...    ....+++++||+++|..+            
T Consensus       359 ~~~l~~l~~~l~~~~dG~~~-q~~~gs~vwdTalal~AL~~ag~~~~~~~~~~l~ka~~~L~~~Q~~~~~~d~~~~~r~~  437 (732)
T 1w6k_A          359 QEHVSRIPDYLWMGLDGMKM-QGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNPPDYQKYYRQM  437 (732)
T ss_dssp             HHHHHTSGGGEEEETTEEEE-CSSSCCHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCCCTTGGGGTCCC
T ss_pred             HHHHHHHHHhheeCCCCcee-CCCCCCchHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHHhcccccCCcccccccCC
Confidence            4556665554  34666432 1111267888999999998887532    124678999999999766            


Q ss_pred             --CCCCCCCC--CCCchhHHHHHHHHHHhcCCCC-----CC---CHHHHHHHHHhccCCCCCcccCCC------------
Q 026402           69 --GGFAGNIG--HDPHVLYTLSAVQVLALFDKVD-----IL---DADKVSNYIVGLQNEDGSFSGDIW------------  124 (239)
Q Consensus        69 --Ggf~~~~~--~~~~~~~T~~al~~L~~l~~~~-----~~---~~~~~~~~l~~~Q~~dGgf~~~~~------------  124 (239)
                        |||+....  ..+++..|..++.+|..+....     .+   .++++++||.++|++||||.....            
T Consensus       438 ~~GGW~f~~~~~~~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~  517 (732)
T 1w6k_A          438 RKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNP  517 (732)
T ss_dssp             CTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCC
T ss_pred             CCCeecCCCCCCCCCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcc
Confidence              89887643  4578999999999988774321     22   358899999999999999963210            


Q ss_pred             ----CC-----CCcchhHHHHhHHHhhccC--------ChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHH
Q 026402          125 ----GE-----VDTRFSYIAICCLSILQRL--------DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGAL  187 (239)
Q Consensus       125 ----~~-----~d~~~ty~al~~l~~l~~~--------~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL  187 (239)
                          +.     +.+..|..++.+|..++..        ....++++++||+++|++||||....+ ..+.+.|++++.+|
T Consensus       518 ~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~~Q~~DGsW~g~wg-~~~~Y~T~~al~AL  596 (732)
T 1w6k_A          518 SEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWG-VCFTYGTWFGLEAF  596 (732)
T ss_dssp             CSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCSSB-SSHHHHHHHHHHHH
T ss_pred             hhcccccccCCCcchHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhhcCCCCCccCcCC-CccchHHHHHHHHH
Confidence                11     1122355566667666542        134689999999999999999987654 35667899999999


Q ss_pred             HHhCCCCC-----CCHHHHHHHHHhccccCCccCCC----------CCCCCChhhhhhhhccCC
Q 026402          188 AIAGALHH-----VDKDLLGWWLCERQVKSGGLNGR----------PEKLPDVGLLLLVGSFKL  236 (239)
Q Consensus       188 ~~l~~~~~-----~~~~~~~~~L~~~Q~~~GGf~~~----------~~k~~D~c~s~~~~~~l~  236 (239)
                      ..++....     ..++++++||+++|+++|||+..          +.+.+|++.|.|++-+|.
T Consensus       597 ~~aG~~~~~~~~~~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y~~~~~s~v~~TAwALlALl  660 (732)
T 1w6k_A          597 ACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLM  660 (732)
T ss_dssp             HHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCHHHHHHHHHHHH
T ss_pred             HHhCCcccccchhHHHHHHHHHHHHhcccCCCCCCCCccccccccCCCCCCCHHHHHHHHHHHH
Confidence            99987432     34789999999999999999864          356789999999988774

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*

Probab=99.87  E-value=6.3e-21  Score=177.45  Aligned_cols=229  Identities=17%  Similarity=0.044  Sum_probs=166.9

Q ss_pred             HHHHHHHHHHcc--cCCCCccccccccchHHHHHHHHHHHHhhCCCC-CcCHHHHHHHHHhccCCC-------------C
Q 026402            6 ADKHVKYIISVE--KKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD-AVDEEDVISWILKCQDES-------------G   69 (239)
Q Consensus         6 ~~~~~~yl~~~q--~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~-~~~~~~~i~~l~~~q~~d-------------G   69 (239)
                      .++|++.|.+..  .+||++..... .+.+|.|.+++.+|..+|... ....+++++||.++|..+             |
T Consensus       283 ~~~~~~~~~~~~~~~~dGg~~~~~~-~s~vwdta~~l~AL~~~G~~~~~~~~~ka~~~L~~~q~~~~g~~~~~~~~~s~G  361 (631)
T 2sqc_A          283 FIKGWEGLELYGVELDYGGWMFQAS-ISPVWDTGLAVLALRAAGLPADHDRLVKAGEWLLDRQITVPGDWAVKRPNLKPG  361 (631)
T ss_dssp             HHHHHHGGGGGEEECTTSCEEECSS-CCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHTCCCSCCGGGGTCTTSCCC
T ss_pred             HHHHHHHHHhceEEcCCCceeeCCC-CChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCCCCChhhhcCCCCCC
Confidence            345666666554  46766543332 377999999999999999753 336889999999998643             4


Q ss_pred             CCCCC--CCCCCchhHHHHHHHHHHhcCCCC----CCCHHHHHHHHHhccCCCCCcccCCC-------------------
Q 026402           70 GFAGN--IGHDPHVLYTLSAVQVLALFDKVD----ILDADKVSNYIVGLQNEDGSFSGDIW-------------------  124 (239)
Q Consensus        70 gf~~~--~~~~~~~~~T~~al~~L~~l~~~~----~~~~~~~~~~l~~~Q~~dGgf~~~~~-------------------  124 (239)
                      ||+..  +...+++..|..++.+|..++...    ...++++++||.++|++||||+....                   
T Consensus       362 gW~f~~~~~~~p~v~dTA~al~AL~~~~~~~~~~~~~~l~~a~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~  441 (631)
T 2sqc_A          362 GFAFQFDNVYYPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVT  441 (631)
T ss_dssp             CBCSSSSCTTCCBHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSS
T ss_pred             CCccccCCCCCCchHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHhhcCCCCCCCccCCCCccccccccccccCCccc
Confidence            54432  234588999999999998877532    11367899999999999999964211                   


Q ss_pred             CCCCcchhHHHHhHHHhhccC-ChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCC-CCCHHHHH
Q 026402          125 GEVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALH-HVDKDLLG  202 (239)
Q Consensus       125 ~~~d~~~ty~al~~l~~l~~~-~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~-~~~~~~~~  202 (239)
                      ..+++..|..++.+|..++.. ....++++++||+++|++||||....+ ..+.+.|..++.+|..++... ...+++++
T Consensus       442 d~~~vd~Ta~vl~aL~~~g~~~~~~~i~rai~~L~~~Q~~DGsw~g~wg-~~~~y~Ta~~l~aL~~~g~~~~~~~i~rav  520 (631)
T 2sqc_A          442 DPPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRWG-VNYLYGTGAVVSALKAVGIDTREPYIQKAL  520 (631)
T ss_dssp             CCCBHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHCCTTSCCCCSSB-SSHHHHHHHHHHHHHHTTCCTTSHHHHHHH
T ss_pred             CCCCchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcCCCCCCCCCCC-CCchHHHHHHHHHHHHhCCcccHHHHHHHH
Confidence            013444566677777776642 235689999999999999999965543 345677888888888887532 34579999


Q ss_pred             HHHHhccccCCccCCCC----------CCCCChhhhhhhhccCC
Q 026402          203 WWLCERQVKSGGLNGRP----------EKLPDVGLLLLVGSFKL  236 (239)
Q Consensus       203 ~~L~~~Q~~~GGf~~~~----------~k~~D~c~s~~~~~~l~  236 (239)
                      +||+++|+++|||+..+          ...+|+..|+|++.+|.
T Consensus       521 ~~L~s~Q~~DGgWg~~~~sy~~~~~~~~~~s~v~~Ta~ALlaL~  564 (631)
T 2sqc_A          521 DWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALI  564 (631)
T ss_dssp             HHHHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHH
T ss_pred             HHHHHhCcCCCCcCCccccccccccCCCCCCCHHHHHHHHHHHH
Confidence            99999999999997543          34678999999998764

>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A

Probab=99.76  E-value=1.8e-17  Score=139.50  Aligned_cols=162  Identities=17%  Similarity=0.160  Sum_probs=119.6

Q ss_pred             HHHHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCCCCCC---HHHHHHHHHh-ccCCCCCcccCCCC----
Q 026402           54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVG-LQNEDGSFSGDIWG----  125 (239)
Q Consensus        54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~-~Q~~dGgf~~~~~~----  125 (239)
                      +++++++++++|++||||+.+++.+++.+.|.+++.+|..+.....++   ++++++||.+ .|++||+|.+...-    
T Consensus        40 i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~  119 (277)
T 1qqf_A           40 IKKGYTQQLAFKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQE  119 (277)
T ss_dssp             HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGG
T ss_pred             HHHHHHHHHHhcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCCCccCCccccchh
Confidence            555667799999999999999998999999999999999887654444   4689999996 99999999875321    


Q ss_pred             ---------CCCcchhHHHHhHHHhhccC-------ChhcHHHHHHHHHhccCC--------------------------
Q 026402          126 ---------EVDTRFSYIAICCLSILQRL-------DKINVDKAVEYIVSCKNL--------------------------  163 (239)
Q Consensus       126 ---------~~d~~~ty~al~~l~~l~~~-------~~~~~~~~~~~l~~~Q~~--------------------------  163 (239)
                               ++++..|..++.+|...+..       ....++++++||.++++.                          
T Consensus       120 ~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAl~l~g~~~~~~l~  199 (277)
T 1qqf_A          120 MIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYLEASYLNLQRPYTVAIAGYALALMNKLEEPYLT  199 (277)
T ss_dssp             GGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTCCCTTHHH
T ss_pred             hcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence                     11233455555555444321       134678999999998764                          


Q ss_pred             -------CCCccCCCCCC-CchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccCCccCC
Q 026402          164 -------DGGFGCTPGGE-SHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNG  217 (239)
Q Consensus       164 -------dGGf~~~~~~~-s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~GGf~~  217 (239)
                             +|++-..++.. .+...|.|+|.+|..++.  ..++.++++||.++|+++|||..
T Consensus       200 ~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--~~~~~~~v~wL~~qq~~~Ggw~s  259 (277)
T 1qqf_A          200 KFLNTAKDRNRWEEPGQQLYNVEATSYALLALLLLKD--FDSVPPVVRWLNDERYYGGGYGS  259 (277)
T ss_dssp             HHHHHSBTTTBCCCTTCHHHHHHHHHHHHHHHHHTTC--TTSHHHHHHHHHHCCCCTTSTTC
T ss_pred             HHHHhccCCCCCCCCCCccchhHHHHHHHHHHHhcCC--hhhHHHHHHHHHHccCCCCCeec
Confidence                   44443333321 256788899888777654  46789999999999999999985

>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A

Probab=99.74  E-value=3.9e-17  Score=139.63  Aligned_cols=162  Identities=19%  Similarity=0.157  Sum_probs=119.5

Q ss_pred             HHHHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCCCCCC---HHHHHHHHHh-ccCCCCCcccCCCC----
Q 026402           54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVG-LQNEDGSFSGDIWG----  125 (239)
Q Consensus        54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~-~Q~~dGgf~~~~~~----  125 (239)
                      +++++++++++|++||||+.+++.+++.+.|.+++.+|..+.....++   ++++++||.+ .|++||+|.+...-    
T Consensus        56 i~~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~  135 (310)
T 2wy7_A           56 IKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQE  135 (310)
T ss_dssp             HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGG
T ss_pred             HHHHHHHHHHhcCCCCCcccCCCCCccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCCccccCCCccCHh
Confidence            556777799999999999999988999999999999999887654444   4689999996 99999999875321    


Q ss_pred             ---------CCCcchhHHHHhHHHhhccC-------ChhcHHHHHHHHHhccCC--------------------------
Q 026402          126 ---------EVDTRFSYIAICCLSILQRL-------DKINVDKAVEYIVSCKNL--------------------------  163 (239)
Q Consensus       126 ---------~~d~~~ty~al~~l~~l~~~-------~~~~~~~~~~~l~~~Q~~--------------------------  163 (239)
                               ++++..|..++.+|...+..       ....++++++||.++|+.                          
T Consensus       136 ~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAL~l~g~~~~~~l~  215 (310)
T 2wy7_A          136 MIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLN  215 (310)
T ss_dssp             GGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred             hcCCcccccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence                     11233455555555444321       134678999999998764                          


Q ss_pred             -------CCCccCCCCCC-CchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccCCccCC
Q 026402          164 -------DGGFGCTPGGE-SHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNG  217 (239)
Q Consensus       164 -------dGGf~~~~~~~-s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~GGf~~  217 (239)
                             +|++-..++.. .+...|.|||.+|...+.  ..++.++++||.++|+++|||..
T Consensus       216 ~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--~~~~~~~v~wL~~qq~~~Ggw~s  275 (310)
T 2wy7_A          216 KFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKD--FDFVPPVVRWLNEQRYYGGGYGS  275 (310)
T ss_dssp             HHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTC--TTTHHHHHHHHHHTTCCCCSTTC
T ss_pred             HHHHhccCCCCCCCCCCcccchHHHHHHHHHHHhcCC--hhhHHHHHHHHHHccCCCCCeec
Confidence                   34443333321 266789999988877764  46789999999999999999974

>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A

Probab=99.68  E-value=9.9e-16  Score=128.88  Aligned_cols=173  Identities=15%  Similarity=0.144  Sum_probs=122.0

Q ss_pred             HHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCc---CHHHHHHHHHh-ccCCCCCCCCCCCC------
Q 026402            8 KHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAV---DEEDVISWILK-CQDESGGFAGNIGH------   77 (239)
Q Consensus         8 ~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~~~---~~~~~i~~l~~-~q~~dGgf~~~~~~------   77 (239)
                      +.++.+.+.|++||||..|..+++..+.|-+++.+|..+.....+   .++++++||.+ .|++||+|......      
T Consensus        42 ~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~~~  121 (277)
T 1qqf_A           42 KGYTQQLAFKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQEMI  121 (277)
T ss_dssp             HHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGG
T ss_pred             HHHHHHHHhcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCCCccCCccccchhhc
Confidence            344448889999999999988888999999999999999853222   46789999996 99999999865421      


Q ss_pred             -------CCchhHHHHHHHHHHhcCC-----CC--CCCHHHHHHHHHhccCC----------------------------
Q 026402           78 -------DPHVLYTLSAVQVLALFDK-----VD--ILDADKVSNYIVGLQNE----------------------------  115 (239)
Q Consensus        78 -------~~~~~~T~~al~~L~~l~~-----~~--~~~~~~~~~~l~~~Q~~----------------------------  115 (239)
                             ++++..|.+++.+|...+.     ..  ...++++++||.+++++                            
T Consensus       122 g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAl~l~g~~~~~~l~~l  201 (277)
T 1qqf_A          122 GGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYLEASYLNLQRPYTVAIAGYALALMNKLEEPYLTKF  201 (277)
T ss_dssp             GGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTCCCTTHHHHH
T ss_pred             CCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence                   2235567777777765421     11  22467899999998764                            


Q ss_pred             -----CCCcccCCCCC-CCcchhHHHHhHHHhhccCChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHH
Q 026402          116 -----DGSFSGDIWGE-VDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAI  189 (239)
Q Consensus       116 -----dGgf~~~~~~~-~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~  189 (239)
                           +|.|...+... .++..|.+++.++...+.  ....+++++||.+.|+++|||..       +..|..||-||+-
T Consensus       202 ~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--~~~~~~~v~wL~~qq~~~Ggw~s-------Tq~T~~aL~AL~~  272 (277)
T 1qqf_A          202 LNTAKDRNRWEEPGQQLYNVEATSYALLALLLLKD--FDSVPPVVRWLNDERYYGGGYGS-------TQATFMVFQALAQ  272 (277)
T ss_dssp             HHHSBTTTBCCCTTCHHHHHHHHHHHHHHHHHTTC--TTSHHHHHHHHHHCCCCTTSTTC-------HHHHHHHHHHHHH
T ss_pred             HHhccCCCCCCCCCCccchhHHHHHHHHHHHhcCC--hhhHHHHHHHHHHccCCCCCeec-------chHHHHHHHHHHH
Confidence                 33343322210 134455555555555544  35789999999999999999974       3568888877764

>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A

Probab=99.64  E-value=3.7e-15  Score=127.34  Aligned_cols=175  Identities=15%  Similarity=0.131  Sum_probs=123.0

Q ss_pred             HHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCc---CHHHHHHHHHh-ccCCCCCCCCCCCC------
Q 026402            8 KHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAV---DEEDVISWILK-CQDESGGFAGNIGH------   77 (239)
Q Consensus         8 ~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~~~---~~~~~i~~l~~-~q~~dGgf~~~~~~------   77 (239)
                      +.++.+.+.|++||||..|..+++..+.|-+++.+|..+.....+   .++++++||.+ .|++||+|....+.      
T Consensus        58 ~g~~~~l~~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~  137 (310)
T 2wy7_A           58 KGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMI  137 (310)
T ss_dssp             HHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGG
T ss_pred             HHHHHHHHhcCCCCCcccCCCCCccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCCccccCCCccCHhhc
Confidence            444458899999999998887788999999999999998853222   46789999996 99999999865431      


Q ss_pred             -------CCchhHHHHHHHHHHhcCC-----CC--CCCHHHHHHHHHhccCC----------------------------
Q 026402           78 -------DPHVLYTLSAVQVLALFDK-----VD--ILDADKVSNYIVGLQNE----------------------------  115 (239)
Q Consensus        78 -------~~~~~~T~~al~~L~~l~~-----~~--~~~~~~~~~~l~~~Q~~----------------------------  115 (239)
                             ++++..|.+++.+|...+.     ..  ...++++++||.++|++                            
T Consensus       138 g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAL~l~g~~~~~~l~~l  217 (310)
T 2wy7_A          138 GGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKF  217 (310)
T ss_dssp             GGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             CCcccccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence                   2335567777777765522     11  12467899999998764                            


Q ss_pred             -----CCCcccCCCC-CCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHH
Q 026402          116 -----DGSFSGDIWG-EVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAI  189 (239)
Q Consensus       116 -----dGgf~~~~~~-~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~  189 (239)
                           +|.|...+.. ..++..|.+++.++...+.  ...++++++||++.|+++|||..       ...|..+|.||+.
T Consensus       218 ~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~--~~~~~~~v~wL~~qq~~~Ggw~s-------Tq~T~~aL~AL~~  288 (310)
T 2wy7_A          218 LTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKD--FDFVPPVVRWLNEQRYYGGGYGS-------TQATFMVFQALAQ  288 (310)
T ss_dssp             HHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTC--TTTHHHHHHHHHHTTCCCCSTTC-------HHHHHHHHHHHHH
T ss_pred             HHhccCCCCCCCCCCcccchHHHHHHHHHHHhcCC--hhhHHHHHHHHHHccCCCCCeec-------cHHHHHHHHHHHH
Confidence                 2333322221 0134456556665555554  35789999999999999999964       3568888888776


Q ss_pred             hC
Q 026402          190 AG  191 (239)
Q Consensus       190 l~  191 (239)
                      ..
T Consensus       289 y~  290 (310)
T 2wy7_A          289 YQ  290 (310)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4

Probab=99.61  E-value=5.6e-15  Score=129.08  Aligned_cols=164  Identities=16%  Similarity=0.165  Sum_probs=115.8

Q ss_pred             CHHHHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCCCCCC---HHHHHHHHHhccCCCCCcccCCCC----
Q 026402           53 DEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVGLQNEDGSFSGDIWG----  125 (239)
Q Consensus        53 ~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~~Q~~dGgf~~~~~~----  125 (239)
                      .++++++||+++|++||||+.+++..++.+.|.+++.+|..+...-.++   ++++++||.+.|++||+|.+....    
T Consensus        92 ~i~~g~~~ll~~Q~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~  171 (367)
T 1hzf_A           92 LIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRS  171 (367)
T ss_dssp             HHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGG
T ss_pred             HHHHHHHHHHhccCCCCCeeccCCCCCcHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccCCCccccccccccc
Confidence            4667899999999999999999887888999999999998776432333   688999999999999999875221    


Q ss_pred             --------CCCcchhHHHHhHHHhhccC------------ChhcHHHHHHHHHhc--cC---------------------
Q 026402          126 --------EVDTRFSYIAICCLSILQRL------------DKINVDKAVEYIVSC--KN---------------------  162 (239)
Q Consensus       126 --------~~d~~~ty~al~~l~~l~~~------------~~~~~~~~~~~l~~~--Q~---------------------  162 (239)
                              ++++..|.+++.+|...+..            ....++++++||.+.  ++                     
T Consensus       172 ~~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~~~~~~~~~y~~Al~ayAL~l~~~~~  251 (367)
T 1hzf_A          172 MQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAGLLGAHAAAITAYALTLTKAPA  251 (367)
T ss_dssp             GGGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTCCH
T ss_pred             ccCCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHhcCCcH
Confidence                    12344556666666544421            123578889998765  21                     


Q ss_pred             ---------------CCCC---ccCCC---------------------CCC-CchhhHHHHHHHHHHhCCCCCCCHHHHH
Q 026402          163 ---------------LDGG---FGCTP---------------------GGE-SHSGQIFCCVGALAIAGALHHVDKDLLG  202 (239)
Q Consensus       163 ---------------~dGG---f~~~~---------------------~~~-s~~~~T~~al~aL~~l~~~~~~~~~~~~  202 (239)
                                     .+|+   |....                     ... .++..|.|+|.+|...+. +.....+.+
T Consensus       252 ~~~~~~~~~L~~~a~~~~~~~~W~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~vE~TAyaLLall~~~~-~~~~~~~iv  330 (367)
T 1hzf_A          252 DLRGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHEG-KAEMADQAS  330 (367)
T ss_dssp             HHHHHHHHHHHTTCEECSSCEECC------------------------CCCHHHHHHHHHHHHHHHHHTC-SSHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhcCCCCccCCCCCcccccccccccccccccccCCCccchhHHHHHHHHHHHhccC-chhhhHHHH
Confidence                           1444   54321                     012 267889999988766542 334578899


Q ss_pred             HHHHhccccCCccCC
Q 026402          203 WWLCERQVKSGGLNG  217 (239)
Q Consensus       203 ~~L~~~Q~~~GGf~~  217 (239)
                      +||.+.|+.+|||..
T Consensus       331 ~WL~~qrn~~Ggw~s  345 (367)
T 1hzf_A          331 AWLTRQGSFQGGFRS  345 (367)
T ss_dssp             HHHHHHTTSTTCSCS
T ss_pred             HHHHhCcCCCCCccc
Confidence            999999999999973

>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4

Probab=99.53  E-value=1.3e-13  Score=120.48  Aligned_cols=177  Identities=17%  Similarity=0.167  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhccCCCCCCCCCCCC-----
Q 026402            6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGH-----   77 (239)
Q Consensus         6 ~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~-----   77 (239)
                      +++++++|.+.|++||||..|..+..+.+.|.+++..|..++..   +....+++++||.+.|++||+|......     
T Consensus        93 i~~g~~~ll~~Q~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~  172 (367)
T 1hzf_A           93 IQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSM  172 (367)
T ss_dssp             HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGG
T ss_pred             HHHHHHHHHhccCCCCCeeccCCCCCcHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccCCCcccccccccccc
Confidence            45778899999999999998877677889999999999888743   2235788999999999999999875321     


Q ss_pred             -------CCchhHHHHHHHHHHhcCCC--C----------CCCHHHHHHHHHhc--cC----------------------
Q 026402           78 -------DPHVLYTLSAVQVLALFDKV--D----------ILDADKVSNYIVGL--QN----------------------  114 (239)
Q Consensus        78 -------~~~~~~T~~al~~L~~l~~~--~----------~~~~~~~~~~l~~~--Q~----------------------  114 (239)
                             ++.+..|.+++.+|...+..  +          ...++++++||.+.  ++                      
T Consensus       173 ~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~~~~~~~~~y~~Al~ayAL~l~~~~~~  252 (367)
T 1hzf_A          173 QGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAGLLGAHAAAITAYALTLTKAPAD  252 (367)
T ss_dssp             GGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTCCHH
T ss_pred             cCCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHhcCCcHH
Confidence                   23466777888887654421  1          11357788888665  21                      


Q ss_pred             --------------CCCC---cccCCC---------------------CC-CCcchhHHHHhHHHhhccCChhcHHHHHH
Q 026402          115 --------------EDGS---FSGDIW---------------------GE-VDTRFSYIAICCLSILQRLDKINVDKAVE  155 (239)
Q Consensus       115 --------------~dGg---f~~~~~---------------------~~-~d~~~ty~al~~l~~l~~~~~~~~~~~~~  155 (239)
                                    .+|+   |.....                     .. .++..|.+++.++...+. +....+++++
T Consensus       253 ~~~~~~~~L~~~a~~~~~~~~W~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~vE~TAyaLLall~~~~-~~~~~~~iv~  331 (367)
T 1hzf_A          253 LRGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHEG-KAEMADQASA  331 (367)
T ss_dssp             HHHHHHHHHHTTCEECSSCEECC------------------------CCCHHHHHHHHHHHHHHHHHTC-SSHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhcCCCCccCCCCCcccccccccccccccccccCCCccchhHHHHHHHHHHHhccC-chhhhHHHHH
Confidence                          1333   322100                     00 134445445555433322 2346789999


Q ss_pred             HHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHh
Q 026402          156 YIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIA  190 (239)
Q Consensus       156 ~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l  190 (239)
                      ||.+.|+++|||+.       ...|..||-||+..
T Consensus       332 WL~~qrn~~Ggw~s-------TqdTvvAL~AL~~y  359 (367)
T 1hzf_A          332 WLTRQGSFQGGFRS-------TQDTVIALDALSAY  359 (367)
T ss_dssp             HHHHHTTSTTCSCS-------HHHHHHHHHHHHHH
T ss_pred             HHHhCcCCCCCccc-------HHHHHHHHHHHHHH
Confidence            99999999999964       25688888777654

>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...

Probab=99.36  E-value=8e-12  Score=120.77  Aligned_cols=160  Identities=19%  Similarity=0.189  Sum_probs=113.9

Q ss_pred             HHHHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCCCCCC---HHHHHHHHHh-ccCCCCCcccCCC-----
Q 026402           54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVG-LQNEDGSFSGDIW-----  124 (239)
Q Consensus        54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~-~Q~~dGgf~~~~~-----  124 (239)
                      +++++++++++|++||||+++++.+++.+.|.+++..|..+.....++   ++++++||.+ .|.+||+|.....     
T Consensus       301 i~~g~~rll~~Q~~DGsfs~w~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~  380 (915)
T 2hr0_B          301 IKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQE  380 (915)
T ss_dssp             HHHHHHHHGGGCCTTTCCBSSSSSCBCHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSC
T ss_pred             HHHHHHHHHHhhcCCCCccccCCCCCcceehHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccCccccchh
Confidence            455777899999999999999988899999999999998876544444   5789999995 9999999975421     


Q ss_pred             ---C-----CCCcchhHHHHhHHHhhccC-------ChhcHHHHHHHHHhccCC--------------------------
Q 026402          125 ---G-----EVDTRFSYIAICCLSILQRL-------DKINVDKAVEYIVSCKNL--------------------------  163 (239)
Q Consensus       125 ---~-----~~d~~~ty~al~~l~~l~~~-------~~~~~~~~~~~l~~~Q~~--------------------------  163 (239)
                         +     ++++..|..++.+|...+..       ....++++++||.+.+..                          
T Consensus       381 m~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~~~~~~~~y~~a~layAL~l~g~~a~~~l~  460 (915)
T 2hr0_B          381 MIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLN  460 (915)
T ss_dssp             CCCSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHHHHHGGGCCSHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred             hcCCccCccccccccHHHHHHHHHhcccccccCcccchHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHcCChHHHHHH
Confidence               0     12333444556666555432       123567888898876433                          


Q ss_pred             -------CCC-ccCCCCC-CCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccCCccC
Q 026402          164 -------DGG-FGCTPGG-ESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLN  216 (239)
Q Consensus       164 -------dGG-f~~~~~~-~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~GGf~  216 (239)
                             +|. |.. ++. ..+...|.|||.+|...+.  .....+.++||.+.|+.+|||.
T Consensus       461 ~L~~~~~~~~~w~~-~~~~~~~ve~TayaLlall~~~~--~~~~~~~v~wL~~qq~~~Ggw~  519 (915)
T 2hr0_B          461 KFLTTAKDKNRWED-PGKQLYNVEATSYALLALLQLKD--FDFVPPVVRWLNEQRYYGGGYG  519 (915)
T ss_dssp             HHHHTSBTTTBCCC-SSCHHHHHHHHHHHHHHHHHTTC--TTTHHHHHHHHHTCCCSSSSCC
T ss_pred             HHHhhccCCCCCCC-CCCCccchHHHHHHHHHHHhcCC--hhhHHHHHHHHHhcccCCCCcc
Confidence                   222 322 111 1256788999988877765  3458899999999999999997

>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}

Probab=99.34  E-value=1.2e-11  Score=123.63  Aligned_cols=179  Identities=12%  Similarity=0.110  Sum_probs=120.4

Q ss_pred             HHHHHHHHHhhCCCCCc-------CHHHHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCCCC-CC---HHH
Q 026402           36 AYWGLTTLDILGKLDAV-------DEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDI-LD---ADK  104 (239)
Q Consensus        36 ~y~al~~l~ll~~~~~~-------~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~-~~---~~~  104 (239)
                      ..++..-|.-.++..+.       ..++++++++++|++||||++++++.++.+.|.+++.+|..+..... ++   .++
T Consensus       849 ~~~~~~yl~~~~~~~~~~~~~~~~~i~~g~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a~~~~~~v~~~~l~~  928 (1325)
T 2pn5_A          849 NILVLDYLHAIGSKEQHLIDKATNLLRQGYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKYISDIDAAMVEK  928 (1325)
T ss_dssp             HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHTTTCSCSCHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHHHHhhEEcCCHHHHHH
Confidence            34444555544543311       24556677899999999999999999999999999999998865443 44   578


Q ss_pred             HHHHHHhccCCCCCcccCCC-------CCCCcchhHHH--HhHHHhhccCC---hhcHHHHHHHHHhccCC-CCCccCC-
Q 026402          105 VSNYIVGLQNEDGSFSGDIW-------GEVDTRFSYIA--ICCLSILQRLD---KINVDKAVEYIVSCKNL-DGGFGCT-  170 (239)
Q Consensus       105 ~~~~l~~~Q~~dGgf~~~~~-------~~~d~~~ty~a--l~~l~~l~~~~---~~~~~~~~~~l~~~Q~~-dGGf~~~-  170 (239)
                      +++||.+.|.+||+|.+...       +..+.+.+|.+  +.+|...+...   ...++++++||.++|+. +++|+.. 
T Consensus       929 a~~~L~~~q~~dG~f~~~~~~~~~~~~g~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~~~~~~~~~a~ 1008 (1325)
T 2pn5_A          929 ALDWLASKQHFSGRFDKAGAEYHKEMQGGLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNAYDLSI 1008 (1325)
T ss_dssp             HHHHHHHTCCTTSCCCCCSCCSCHHHHCCSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGGGCCCHHHHHH
T ss_pred             HHHHHHhhhccCCCccccccccChhhcCcccCCccccHHHHHHHhhCcccccccHHHHHHHHHHHHHhhcccCCHHHHHH
Confidence            99999999999999976421       12223333333  33332222221   23577888999887765 5655211 


Q ss_pred             ---------------------------C-------CCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccCCccC
Q 026402          171 ---------------------------P-------GGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLN  216 (239)
Q Consensus       171 ---------------------------~-------~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~GGf~  216 (239)
                                                 .       ...++...|.|||.+|...+.  .....+.++||++.|+.+|||.
T Consensus      1009 ~ayaL~l~g~~~~~~~l~~L~~~~~~~~~~~~~~w~~~s~ve~tA~aLlall~~~~--~~~~~~~v~wL~~q~~~~g~w~ 1086 (1325)
T 2pn5_A         1009 ATYAMMLNGHTMKEEALNKLIDMSFIDADKNERFWNTTNPIETTAYALLSFVMAEK--YTDGIPVMNWLVNQRYVTGSFP 1086 (1325)
T ss_dssp             HHHHHHHHTCTTHHHHHHHHHHTCEEETTTTEEECCSSSHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCCTTSSCS
T ss_pred             HHHHHHhcCCchHHHHHHHHHhhhhhccCCCcccCCCCCchHHHHHHHHHHhhhcc--chhhHHHHHHHHhccCCCCCcc
Confidence                                       0       113466788888877766553  3346788999999999899997

>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...

Probab=99.25  E-value=7.2e-11  Score=114.16  Aligned_cols=174  Identities=15%  Similarity=0.136  Sum_probs=117.7

Q ss_pred             HHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCC---cCHHHHHHHHHh-ccCCCCCCCCCCCC------
Q 026402            8 KHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDA---VDEEDVISWILK-CQDESGGFAGNIGH------   77 (239)
Q Consensus         8 ~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~~---~~~~~~i~~l~~-~q~~dGgf~~~~~~------   77 (239)
                      +.++.+.+.|++||||..|...++..|.|-+++..|..+.....   ...+++++||.+ .|++||+|......      
T Consensus       303 ~g~~rll~~Q~~DGsfs~w~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~  382 (915)
T 2hr0_B          303 KGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMI  382 (915)
T ss_dssp             HHHHHHGGGCCTTTCCBSSSSSCBCHHHHHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSCCC
T ss_pred             HHHHHHHHhhcCCCCccccCCCCCcceehHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccCccccchhhc
Confidence            44555778999999999998878899999999999998874322   247889999995 99999999754221      


Q ss_pred             -------CCchhHHHHHHHHHHhcCCC-----CC--CCHHHHHHHHHhccCC----------------------------
Q 026402           78 -------DPHVLYTLSAVQVLALFDKV-----DI--LDADKVSNYIVGLQNE----------------------------  115 (239)
Q Consensus        78 -------~~~~~~T~~al~~L~~l~~~-----~~--~~~~~~~~~l~~~Q~~----------------------------  115 (239)
                             ++++..|.+++.+|...+..     ..  ..++++++||.+.+..                            
T Consensus       383 gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~~~~~~~~y~~a~layAL~l~g~~a~~~l~~L  462 (915)
T 2hr0_B          383 GGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKF  462 (915)
T ss_dssp             CSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHHHHHGGGCCSHHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred             CCccCccccccccHHHHHHHHHhcccccccCcccchHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence                   13455677778877766442     11  1256788888887543                            


Q ss_pred             -----CCCcccCCCC-CCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHH
Q 026402          116 -----DGSFSGDIWG-EVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAI  189 (239)
Q Consensus       116 -----dGgf~~~~~~-~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~  189 (239)
                           +|.|...+.. ..++..|.+++.+|...+..  ....++++||++.|+++|||..       ...|..||-||+.
T Consensus       463 ~~~~~~~~~w~~~~~~~~~ve~TayaLlall~~~~~--~~~~~~v~wL~~qq~~~Ggw~S-------TQdT~~Al~AL~~  533 (915)
T 2hr0_B          463 LTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDF--DFVPPVVRWLNEQRYYGGGYGS-------TQATFMVFQALAQ  533 (915)
T ss_dssp             HHTSBTTTBCCCSSCHHHHHHHHHHHHHHHHHTTCT--TTHHHHHHHHHTCCCSSSSCCS-------HHHHHHHHHHHHH
T ss_pred             HhhccCCCCCCCCCCCccchHHHHHHHHHHHhcCCh--hhHHHHHHHHHhcccCCCCccc-------hhhHHHHHHHHHH
Confidence                 2221111111 01344555566665555543  3578899999999999999964       2457778877765


Q ss_pred             h
Q 026402          190 A  190 (239)
Q Consensus       190 l  190 (239)
                      .
T Consensus       534 y  534 (915)
T 2hr0_B          534 Y  534 (915)
T ss_dssp             H
T ss_pred             H
Confidence            4

>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}

Probab=99.19  E-value=1.7e-10  Score=116.00  Aligned_cols=203  Identities=9%  Similarity=0.058  Sum_probs=132.8

Q ss_pred             HHHHHHHHHcccCCCCcccccc----ccchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhccCCCCCCCCCC----
Q 026402            7 DKHVKYIISVEKKKDSFESVVM----EHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNI----   75 (239)
Q Consensus         7 ~~~~~yl~~~q~~dg~~~~~~~----~~~~~~~~y~al~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~----   75 (239)
                      +++++.+.+.|++||+|..|..    ++...|.|-|++..|..+...   ++...+++++||++.|++||+|....    
T Consensus       986 ~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~~ 1065 (1451)
T 4acq_A          986 NTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLLN 1065 (1451)
T ss_dssp             HHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECCCCCCSC
T ss_pred             HHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccCCcccccCcccc
Confidence            4667778889999999998853    457899999999999988753   23358889999999999999997431    


Q ss_pred             -----CCCCchhHHHHHHHHHHhcCCCC-CCCHHHHHHHHHhccCC--CCCcccCCCCCCCcchhHHHHhHHHhhccCCh
Q 026402           76 -----GHDPHVLYTLSAVQVLALFDKVD-ILDADKVSNYIVGLQNE--DGSFSGDIWGEVDTRFSYIAICCLSILQRLDK  147 (239)
Q Consensus        76 -----~~~~~~~~T~~al~~L~~l~~~~-~~~~~~~~~~l~~~Q~~--dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~  147 (239)
                           +.++++..|.+++.+|...+... ...++++++||++....  +|.-      ..+......+..+|.+.+.  .
T Consensus      1066 ~~m~gg~~~~~~lTAyvl~aL~~~g~~~~~~~i~~A~~~L~~~~~~~~~~~~------~~~~y~~AllAyAlal~g~--~ 1137 (1451)
T 4acq_A         1066 NAIKGGVEDEVTLSAYITIALLEIPLTVTHPVVRNALFCLESAWKTAQEGDH------GSHVYTKALLAYAFALAGN--Q 1137 (1451)
T ss_dssp             GGGCCSCSCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHTSSCS------SSTHHHHHHHHHHHHHHTC--H
T ss_pred             hhhcCCCCCCccchHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhhhcccccc------cCChHHHHHHHHHHHhcCC--h
Confidence                 12356778999999988776422 22367999999876211  1110      0112112222333445554  2


Q ss_pred             hcHHHHHHHHHhccCCCCC---ccCCCC-------------CCCchhhHHHHHHHHHHhCCC----CCCCHHHHHHHHHh
Q 026402          148 INVDKAVEYIVSCKNLDGG---FGCTPG-------------GESHSGQIFCCVGALAIAGAL----HHVDKDLLGWWLCE  207 (239)
Q Consensus       148 ~~~~~~~~~l~~~Q~~dGG---f~~~~~-------------~~s~~~~T~~al~aL~~l~~~----~~~~~~~~~~~L~~  207 (239)
                      ...+.+++=|.+....+||   |+....             ...+...|.|||.+|..++..    +.....+.++||.+
T Consensus      1138 ~~~~~~l~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~s~~vE~TayaLLall~~~~~~~~~d~~~a~~iv~WL~~ 1217 (1451)
T 4acq_A         1138 DKRKEVLKSLNEEAVKKDNSVHWERPQKPKAPVGHFYEPQAPSAEVEMTSYVLLAYLTAQPAPTSEDLTSATNIVKWITK 1217 (1451)
T ss_dssp             HHHHHHHHHHHHHCCBCSSCBCCCCCCCSSSCSSSTTCCCTTGGGGTHHHHHHHHHHCCSSCCCHHHHHHHHTTHHHHTT
T ss_pred             hHHHHHHHHHHHHhhccCCceecCCCCCCccccccccccCCchHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHH
Confidence            2334466666666555666   543211             123567899999777665421    12235678999999


Q ss_pred             ccccCCccCC
Q 026402          208 RQVKSGGLNG  217 (239)
Q Consensus       208 ~Q~~~GGf~~  217 (239)
                      .|+..|||..
T Consensus      1218 qr~~~Ggf~S 1227 (1451)
T 4acq_A         1218 QQNAQGGFSS 1227 (1451)
T ss_dssp             CCCTTSCCSS
T ss_pred             cCCCCCCccc
Confidence            9999999973

>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}

Probab=99.09  E-value=7.7e-10  Score=110.77  Aligned_cols=174  Identities=14%  Similarity=0.090  Sum_probs=114.7

Q ss_pred             HHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCC----CcCHHHHHHHHHhccCCCCCCCCCCC-------
Q 026402            8 KHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD----AVDEEDVISWILKCQDESGGFAGNIG-------   76 (239)
Q Consensus         8 ~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~----~~~~~~~i~~l~~~q~~dGgf~~~~~-------   76 (239)
                      ++++.+.++|++||||..|..+++..|.|.+++.+|..+....    ....+++++||.+.|++||.|.....       
T Consensus       876 ~g~~rll~~q~~dGgf~~f~~~~~s~~lTa~v~~~l~~a~~~~~~v~~~~l~~a~~~L~~~q~~dG~f~~~~~~~~~~~~  955 (1325)
T 2pn5_A          876 QGYQNQMRYRQTDGSFGLWETTNGSVFLTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKEMQ  955 (1325)
T ss_dssp             HHHHHHGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHTTTCSCSCHHHHHHHHHHHHHTCCTTSCCCCCSCCSCHHHH
T ss_pred             HHHHHHHhcCCCCCCeeccCCCCCCeeehHHHHHHHHHHHhhEEcCCHHHHHHHHHHHHhhhccCCCccccccccChhhc
Confidence            4444558899999999999888899999999999999886432    12467899999999999999865421       


Q ss_pred             -C-CCchhHHHHHHHHHHhcCCCC---CCCHHHHHHHHHhccCC-CCCcccC-----------C----------------
Q 026402           77 -H-DPHVLYTLSAVQVLALFDKVD---ILDADKVSNYIVGLQNE-DGSFSGD-----------I----------------  123 (239)
Q Consensus        77 -~-~~~~~~T~~al~~L~~l~~~~---~~~~~~~~~~l~~~Q~~-dGgf~~~-----------~----------------  123 (239)
                       . ......|++++.+|...+...   ...++++++||.+.|.. +++|...           +                
T Consensus       956 g~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~~~~~~~~~a~~ayaL~l~g~~~~~~~l~~L~~~~~~~ 1035 (1325)
T 2pn5_A          956 GGLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNAYDLSIATYAMMLNGHTMKEEALNKLIDMSFID 1035 (1325)
T ss_dssp             CCSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHTCTTHHHHHHHHHHTCEEE
T ss_pred             CcccCCccccHHHHHHHhhCcccccccHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcCCchHHHHHHHHHhhhhhc
Confidence             1 123444555555554322111   12356788898887765 5665311           0                


Q ss_pred             --------CCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHh
Q 026402          124 --------WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIA  190 (239)
Q Consensus       124 --------~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l  190 (239)
                              ...++++.|-+++.+|...+.  .....+.++||++.|+.+|||..       ...|.++|.||+..
T Consensus      1036 ~~~~~~~w~~~s~ve~tA~aLlall~~~~--~~~~~~~v~wL~~q~~~~g~w~s-------Tq~T~~aL~AL~~y 1101 (1325)
T 2pn5_A         1036 ADKNERFWNTTNPIETTAYALLSFVMAEK--YTDGIPVMNWLVNQRYVTGSFPS-------TQDTFVGLKALTKM 1101 (1325)
T ss_dssp             TTTTEEECCSSSHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCCTTSSCSS-------HHHHHHHHHHHHHH
T ss_pred             cCCCcccCCCCCchHHHHHHHHHHhhhcc--chhhHHHHHHHHhccCCCCCccc-------hHHHHHHHHHHHHH
Confidence                    001234444444444433333  34567899999999999999963       35678888777654

>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1

Probab=99.09  E-value=1.6e-10  Score=100.47  Aligned_cols=159  Identities=17%  Similarity=0.044  Sum_probs=96.4

Q ss_pred             HHHHHHHHHhccCCCCCCCCCCC--------------------------------------CCCchhHHHHHHHHHHhcC
Q 026402           54 EEDVISWILKCQDESGGFAGNIG--------------------------------------HDPHVLYTLSAVQVLALFD   95 (239)
Q Consensus        54 ~~~~i~~l~~~q~~dGgf~~~~~--------------------------------------~~~~~~~T~~al~~L~~l~   95 (239)
                      -+++.+.|+..|+++|||.....                                      .+.+...|..++.+|..+.
T Consensus        83 A~~iAd~ll~~Q~~~GGW~kn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~aL~rv~  162 (408)
T 1r76_A           83 ARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQVV  162 (408)
T ss_dssp             HHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccccCCCCCCccccccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHHHHHHH
Confidence            56789999999999999975321                                      0123356888888776653


Q ss_pred             CC-C--C-----CCHHHHHHHHHhccCCCCCcccC-CCCC--------CCcchhHHHHhHHHhhccC-------------
Q 026402           96 KV-D--I-----LDADKVSNYIVGLQNEDGSFSGD-IWGE--------VDTRFSYIAICCLSILQRL-------------  145 (239)
Q Consensus        96 ~~-~--~-----~~~~~~~~~l~~~Q~~dGgf~~~-~~~~--------~d~~~ty~al~~l~~l~~~-------------  145 (239)
                      .. .  .     ..++++++||...|.+||||... +...        +| ..|--++-.|..++..             
T Consensus       163 ~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnD-Dvt~rvle~L~~~~~~~~~~~~~~~~~~~  241 (408)
T 1r76_A          163 SQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYND-DALVHVAELLSDIAAGRDGFGFVPPAIRT  241 (408)
T ss_dssp             HHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGG-GHHHHHHHHHHHHHHTCTTCTTSCHHHHH
T ss_pred             hhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCc-HHHHHHHHHHHHHHhccCcccccchhhhh
Confidence            32 1  1     12579999999999999999753 2211        11 1122233334333331             


Q ss_pred             -ChhcHHHHHHHHHhccCC-CCCccCCCCC---------------C--C-chhhHHHHHHHHHHhCCCCCC-----CHHH
Q 026402          146 -DKINVDKAVEYIVSCKNL-DGGFGCTPGG---------------E--S-HSGQIFCCVGALAIAGALHHV-----DKDL  200 (239)
Q Consensus       146 -~~~~~~~~~~~l~~~Q~~-dGGf~~~~~~---------------~--s-~~~~T~~al~aL~~l~~~~~~-----~~~~  200 (239)
                       ....++|+++||++.|.+ ||.|- +.+.               |  + .+..|.++|.  .+++...+.     .+.+
T Consensus       242 ~~~~av~Rgi~~Ll~~Qe~~dGsw~-rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~--~LM~~~~~~~~~~~aI~~  318 (408)
T 1r76_A          242 RALEATNAAIHCIVETQVVQDGKRL-GWGQQHDALTLRPTSARNFEPAALSSTESARILL--FLMEIEAPSDAVKQAIRG  318 (408)
T ss_dssp             HHHHHHHHHHHHHHHHSCEETTEEC-CCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHH--HHTTSSSCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhcccCCccc-chhcccccccCcchhhhccCCccccHHHHHHHHH--HHccCCCCCHHHHHHHHH
Confidence             124678999999999999 99875 4221               0  0 1223333332  333332222     2789


Q ss_pred             HHHHHHhccccCCccC
Q 026402          201 LGWWLCERQVKSGGLN  216 (239)
Q Consensus       201 ~~~~L~~~Q~~~GGf~  216 (239)
                      +++||.++|.++|+|.
T Consensus       319 Av~WL~s~Q~~dg~w~  334 (408)
T 1r76_A          319 GVAWLNTSVIRDRAWV  334 (408)
T ss_dssp             HHHHHHHSCCCC----
T ss_pred             HHHHHHHhhcCCCcee
Confidence            9999999999999987

>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1

Probab=99.06  E-value=8.9e-11  Score=102.09  Aligned_cols=162  Identities=12%  Similarity=0.069  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHcccCCCCccccc--------------------------------------cccchHHHHHHHHHHHHhhC
Q 026402            6 ADKHVKYIISVEKKKDSFESVV--------------------------------------MEHLRLNGAYWGLTTLDILG   47 (239)
Q Consensus         6 ~~~~~~yl~~~q~~dg~~~~~~--------------------------------------~~~~~~~~~y~al~~l~ll~   47 (239)
                      .+++.+.|.+.|++.|||....                                      ....|...|.-++..|.-+.
T Consensus        83 A~~iAd~ll~~Q~~~GGW~kn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~aL~rv~  162 (408)
T 1r76_A           83 ARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQVV  162 (408)
T ss_dssp             HHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccccCCCCCCccccccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHHHHHHH
Confidence            5678899999999999995311                                      01233344666666665543


Q ss_pred             CC----C----CcCHHHHHHHHHhccCCCCCCCCCCCCC----Cch----hHHHHHHHHHHhcCC----CCC--------
Q 026402           48 KL----D----AVDEEDVISWILKCQDESGGFAGNIGHD----PHV----LYTLSAVQVLALFDK----VDI--------   99 (239)
Q Consensus        48 ~~----~----~~~~~~~i~~l~~~q~~dGgf~~~~~~~----~~~----~~T~~al~~L~~l~~----~~~--------   99 (239)
                      ..    .    ....+++++||+++|.+||||+.+.-..    .++    ..|..+|..|..+..    +..        
T Consensus       163 ~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDvt~rvle~L~~~~~~~~~~~~~~~~~~~~  242 (408)
T 1r76_A          163 SQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIRTR  242 (408)
T ss_dssp             HHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHHHH
T ss_pred             hhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHHHHHHHHHHHHHHhccCcccccchhhhhh
Confidence            21    1    1247789999999999999999875311    111    345556666655432    111        


Q ss_pred             --CCHHHHHHHHHhccCC-CCCcccCCCC---------------CC-CcchhHHHHhHHHhhccC--Ch---hcHHHHHH
Q 026402          100 --LDADKVSNYIVGLQNE-DGSFSGDIWG---------------EV-DTRFSYIAICCLSILQRL--DK---INVDKAVE  155 (239)
Q Consensus       100 --~~~~~~~~~l~~~Q~~-dGgf~~~~~~---------------~~-d~~~ty~al~~l~~l~~~--~~---~~~~~~~~  155 (239)
                        ..++++++||.+.|.+ ||.|. ++..               |. -++..-.+-.++.++...  ++   ..++++++
T Consensus       243 ~~~av~Rgi~~Ll~~Qe~~dGsw~-rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~LM~~~~~~~~~~~aI~~Av~  321 (408)
T 1r76_A          243 ALEATNAAIHCIVETQVVQDGKRL-GWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGGVA  321 (408)
T ss_dssp             HHHHHHHHHHHHHHHSCEETTEEC-CCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcccCCccc-chhcccccccCcchhhhccCCccccHHHHHHHHHHHccCCCCCHHHHHHHHHHHH
Confidence              1368899999999999 99987 3211               00 111111111112222222  11   25899999


Q ss_pred             HHHhccCCCCCcc
Q 026402          156 YIVSCKNLDGGFG  168 (239)
Q Consensus       156 ~l~~~Q~~dGGf~  168 (239)
                      ||.++|++||+|-
T Consensus       322 WL~s~Q~~dg~w~  334 (408)
T 1r76_A          322 WLNTSVIRDRAWV  334 (408)
T ss_dssp             HHHHSCCCC----
T ss_pred             HHHHhhcCCCcee
Confidence            9999999999997

>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*

Probab=98.95  E-value=3.1e-08  Score=94.11  Aligned_cols=194  Identities=16%  Similarity=0.133  Sum_probs=116.8

Q ss_pred             HHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCC---cCHHHHHHHHHhccCCCCCCCCCC--------CC
Q 026402            9 HVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDA---VDEEDVISWILKCQDESGGFAGNI--------GH   77 (239)
Q Consensus         9 ~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~~---~~~~~~i~~l~~~q~~dGgf~~~~--------~~   77 (239)
                      .++-+.+.|++||+|..|++.++..|.|.|++..|..+.....   ....+++.||.+.|.+||.|...-        +.
T Consensus       373 gyqrll~~q~~DGsfs~w~~~~~s~wLTAyV~~~l~~A~~~i~id~~~i~~a~~wL~~~Q~~~G~f~e~g~~~~~~~~gg  452 (767)
T 4fxk_B          373 GYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGG  452 (767)
T ss_dssp             HHHHHTTTBCTTSCBBSSSSSCBCHHHHHHHHHHHHHTCSSSSCCHHHHHHHHHHHHHTBCTTSCBCCSSCSCCCCCCSS
T ss_pred             HHHHHHHhhcCCCCcccCCCCCCCchhHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhcccchhcchhcchhhcCC
Confidence            3333456789999999998888999999999999998876432   246778899999999999997532        11


Q ss_pred             ----CCchhHHHHHHHHHHhcCCCC--C----------CCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHH-HHh--H
Q 026402           78 ----DPHVLYTLSAVQVLALFDKVD--I----------LDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYI-AIC--C  138 (239)
Q Consensus        78 ----~~~~~~T~~al~~L~~l~~~~--~----------~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~-al~--~  138 (239)
                          ..++..|.+.+.+|...+...  .          ..+.++++||.+....+  +          ...|. |+.  +
T Consensus       453 ~~~~~~~~~ltAyvliaL~e~~~~~~~~~~~~~~~~~~~~i~ka~~~L~~~~~~~--~----------~~~y~~Al~aya  520 (767)
T 4fxk_B          453 LVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKANSFLGEKASAG--L----------LGAHAAAITAYA  520 (767)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHHHHHHHHTTSC--C----------CCHHHHHHHHHH
T ss_pred             cCCCccchhHHHHHHHHHHhcCCccccchhhhhHhHHHHHHHHHHHHHHHHhhcc--c----------CCHHHHHHHHHH
Confidence                123556677776665433211  0          12567888887765331  1          11232 222  2


Q ss_pred             HHhhccCChhcHHHHHHHHHhccCCCCC---ccCCCCC---------------------C-CchhhHHHHHHHHHHhCCC
Q 026402          139 LSILQRLDKINVDKAVEYIVSCKNLDGG---FGCTPGG---------------------E-SHSGQIFCCVGALAIAGAL  193 (239)
Q Consensus       139 l~~l~~~~~~~~~~~~~~l~~~Q~~dGG---f~~~~~~---------------------~-s~~~~T~~al~aL~~l~~~  193 (239)
                      |.+.+.. ....+.+.+-|.+.-..+|+   |....+.                     . .+...|.++|.++..... 
T Consensus       521 L~l~~~~-~~~~~~~~~~L~~~a~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEttayaLla~l~~~~-  598 (767)
T 4fxk_B          521 LSLTKAP-VDLLGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHEG-  598 (767)
T ss_dssp             HHHHTCT-THHHHHHHHHHHTTCCBCSSCBCCCCCCCCCGGGGCCSSSCCCSSSCBCCCCHHHHHHHHHHHHHHHHHTS-
T ss_pred             HHHcCCc-HHHHHHHHHHHHhhcEEcCCeeEEeccCCCcccccccccccccccccccccchHHHHHHHHHHHHHHhcCC-
Confidence            3333432 12233444555554333332   2111110                     0 124567888866554432 


Q ss_pred             CCCCHHHHHHHHHhccccCCccC
Q 026402          194 HHVDKDLLGWWLCERQVKSGGLN  216 (239)
Q Consensus       194 ~~~~~~~~~~~L~~~Q~~~GGf~  216 (239)
                      +.....+.++||.+.|+..|||.
T Consensus       599 ~~~~a~~iv~WL~~Qr~~~Ggf~  621 (767)
T 4fxk_B          599 KAEMADQASAWLTRQGSFQGGFR  621 (767)
T ss_dssp             SCHHHHHHHHHHHHTCCTTSSCS
T ss_pred             chhHHHHHHHHHHHhhcCCCCCc
Confidence            23346789999999999899996

>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*

Probab=98.94  E-value=2.4e-10  Score=96.71  Aligned_cols=153  Identities=19%  Similarity=0.175  Sum_probs=94.7

Q ss_pred             HHHHHHHhccCCCCCCCCCCC-------------CCCchhHHHHHHHHHHhcCCCC-----CCCHHHHHHHHHhccCCCC
Q 026402           56 DVISWILKCQDESGGFAGNIG-------------HDPHVLYTLSAVQVLALFDKVD-----ILDADKVSNYIVGLQNEDG  117 (239)
Q Consensus        56 ~~i~~l~~~q~~dGgf~~~~~-------------~~~~~~~T~~al~~L~~l~~~~-----~~~~~~~~~~l~~~Q~~dG  117 (239)
                      .+.+.|+..|+++|||.....             .+++...|..++.+|..+....     ...++++++||...|.++|
T Consensus        35 ~~Ad~~l~~Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nG  114 (332)
T 1gxm_A           35 SRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTG  114 (332)
T ss_dssp             GGHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             HHHHHHHHcCcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCC
Confidence            357889999999999996421             2345567888888886553211     1125899999999999999


Q ss_pred             CcccC-CCCC--------CCcchhHHHHhHHHhhcc----C------------ChhcHHHHHHHHHhccCCCCCccCCCC
Q 026402          118 SFSGD-IWGE--------VDTRFSYIAICCLSILQR----L------------DKINVDKAVEYIVSCKNLDGGFGCTPG  172 (239)
Q Consensus       118 gf~~~-~~~~--------~d~~~ty~al~~l~~l~~----~------------~~~~~~~~~~~l~~~Q~~dGGf~~~~~  172 (239)
                      ||... |...        +| ..|--++-.|..++.    .            ....++|+++||++.|.++|||-.+.+
T Consensus       115 GWpqFdpd~~~Yl~~IpFnD-DvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw~g~Wg  193 (332)
T 1gxm_A          115 ALPQFYPLKGGYSDHATFND-NGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVWC  193 (332)
T ss_dssp             CCBSEESCCSGGGGSEECGG-GHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCC
T ss_pred             CccccCCCcccccccCCcch-HHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCCcCeec
Confidence            99863 2211        12 123334444444431    1            124578999999999999998865543


Q ss_pred             CCCchhhHHH----------------HHHHHH-HhCCCCCC----CHHHHHHHHHhccc
Q 026402          173 GESHSGQIFC----------------CVGALA-IAGALHHV----DKDLLGWWLCERQV  210 (239)
Q Consensus       173 ~~s~~~~T~~----------------al~aL~-~l~~~~~~----~~~~~~~~L~~~Q~  210 (239)
                      . .|.+.|.-                ++..+. +++.....    .++++++||.++|.
T Consensus       194 ~-qydygT~~Pa~ARayE~psL~~~es~giv~~LM~~~~~~~v~~aI~~Av~WL~~~q~  251 (332)
T 1gxm_A          194 A-QHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQTAEIEQAVRAGVAWFNSPRT  251 (332)
T ss_dssp             S-EECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCCCHHHHHHHHHHHHHHTCTTT
T ss_pred             c-ccccccccccccccccccchhHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhccc
Confidence            2 12122222                122222 33432211    27899999999998

>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}

Probab=98.89  E-value=5e-08  Score=99.57  Aligned_cols=191  Identities=14%  Similarity=0.153  Sum_probs=122.1

Q ss_pred             HHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCC---CcCHHHHHHHHHh-ccCCCCCCCCCC--------C--
Q 026402           11 KYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILK-CQDESGGFAGNI--------G--   76 (239)
Q Consensus        11 ~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~---~~~~~~~i~~l~~-~q~~dGgf~~~~--------~--   76 (239)
                      +-+++.|++||+|..|...+...|.|-|++..|..+....   +...+++++||.+ .|++||.|....        +  
T Consensus      1053 ~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~ 1132 (1661)
T 2b39_A         1053 TQQLAFRQKSSAYAAFQYRPPSTWLTAYVVKVFALAANLIAIDSKDLCETVKWLILEKQKPDGIFQEDGPVIHQEMIGGF 1132 (1661)
T ss_dssp             HHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHTBCTTSCBCCCSCCCCTTSCCCT
T ss_pred             HHHHHhhcCCCCccccCCCCCchhhhHHHHHHHHhhhhcccCCHHHHHHHHHHhhHhhCCCCCccccccceechhhcCCc
Confidence            3344688999999999877889999999999999887642   2246789999995 999999986421        1  


Q ss_pred             ---CCCchhHHHHHHHHHHhcCCC-----CCC--CHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCC
Q 026402           77 ---HDPHVLYTLSAVQVLALFDKV-----DIL--DADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLD  146 (239)
Q Consensus        77 ---~~~~~~~T~~al~~L~~l~~~-----~~~--~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~  146 (239)
                         .++++..|.+++.+|...+..     ...  .++++++||.+....   +       .+......+..+|.+.+.. 
T Consensus      1133 ~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~~~i~~a~~yL~~~~~~---~-------~~~y~~A~layAL~l~g~~- 1201 (1661)
T 2b39_A         1133 RDTREKDVSLTAFVLIALHEAKDICEAQVNSLGRSIAKAGDFLENHYRE---L-------RRPYTVAIAAYALALLGKL- 1201 (1661)
T ss_dssp             TCCTTSSHHHHHHHHHHHHHTTTTTTTTCSSHHHHHHHHHHHHHHHTTT---C-------CSHHHHHHHHHHHHHTTCC-
T ss_pred             cccccCccccHHHHHHHHHhccccccccCcchhHHHHHHHHHHHHhhhc---c-------CCHHHHHHHHHHHHHcCCc-
Confidence               112556677777777665432     111  256789999775322   1       1111111122334445543 


Q ss_pred             hhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccCCccCC
Q 026402          147 KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNG  217 (239)
Q Consensus       147 ~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~GGf~~  217 (239)
                         .+++++.|.+.......|....+...+...|.+||.++...+.  .....+.++||.+.|+..|||..
T Consensus      1202 ---a~~~l~~L~~~~~~~~~W~~~~~~~~~vE~tayaLlall~~~~--~~~~~~iv~wL~~qr~~~gg~~S 1267 (1661)
T 2b39_A         1202 ---EGDRLTKFLNTAKEKNRWEEPNQKLYNVEATSYALLALLARKD--YDTTPPVVRWLNEQRYYGGGYGS 1267 (1661)
T ss_dssp             ---CHHHHHHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTC--TTTSHHHHHHHHHCCTBTTBBCS
T ss_pred             ---HHHHHHHHHhhccCCCCCCCCCCCcchHHHHHHHHHHHHhcCC--hhhHHHHHHHHHhcccCCCCccc
Confidence               3556666666544222343221112356688888888877764  34467889999998888899974

>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*

Probab=98.84  E-value=3.6e-10  Score=95.66  Aligned_cols=155  Identities=12%  Similarity=0.133  Sum_probs=98.3

Q ss_pred             HHHHHHHHcccCCCCcccc-------------ccccchHHHHHHHHHHHHhhCCC--C---CcCHHHHHHHHHhccCCCC
Q 026402            8 KHVKYIISVEKKKDSFESV-------------VMEHLRLNGAYWGLTTLDILGKL--D---AVDEEDVISWILKCQDESG   69 (239)
Q Consensus         8 ~~~~yl~~~q~~dg~~~~~-------------~~~~~~~~~~y~al~~l~ll~~~--~---~~~~~~~i~~l~~~q~~dG   69 (239)
                      +..+-|.+.|++.|||...             .....|...|.-++..|+-+...  +   ....+++++||+++|.+||
T Consensus        35 ~~Ad~~l~~Q~~~GGW~kn~d~~~~~~~~~~~~~~t~DnddTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~nG  114 (332)
T 1gxm_A           35 SRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTG  114 (332)
T ss_dssp             GGHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             HHHHHHHHcCcCCCCCCcceecccccccCCCCCCCCccCccHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCCCC
Confidence            3467788999999999631             12245666677777777655321  1   1257899999999999999


Q ss_pred             CCCCCCCC----CCch----hHHHHHHHHHHhcCC----CC------------CCCHHHHHHHHHhccCCCCCcccCCCC
Q 026402           70 GFAGNIGH----DPHV----LYTLSAVQVLALFDK----VD------------ILDADKVSNYIVGLQNEDGSFSGDIWG  125 (239)
Q Consensus        70 gf~~~~~~----~~~~----~~T~~al~~L~~l~~----~~------------~~~~~~~~~~l~~~Q~~dGgf~~~~~~  125 (239)
                      ||+.+.-.    ..++    ..|..+|..|..+..    +.            ...++++++||.+.|.++|||.+.+..
T Consensus       115 GWpqFdpd~~~Yl~~IpFnDDvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Qe~dggw~g~Wg~  194 (332)
T 1gxm_A          115 ALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVWCA  194 (332)
T ss_dssp             CCBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCCS
T ss_pred             CccccCCCcccccccCCcchHHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhhCccCCCcCeecc
Confidence            99987431    1111    356777777776642    11            113688999999999999998876432


Q ss_pred             CCCcchhHH----------------HHhHHH-hhccCChh----cHHHHHHHHHhccCC
Q 026402          126 EVDTRFSYI----------------AICCLS-ILQRLDKI----NVDKAVEYIVSCKNL  163 (239)
Q Consensus       126 ~~d~~~ty~----------------al~~l~-~l~~~~~~----~~~~~~~~l~~~Q~~  163 (239)
                       .+...|+.                ++..+. +++.....    .++++++||.++|++
T Consensus       195 -qydygT~~Pa~ARayE~psL~~~es~giv~~LM~~~~~~~v~~aI~~Av~WL~~~q~~  252 (332)
T 1gxm_A          195 -QHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQTAEIEQAVRAGVAWFNSPRTY  252 (332)
T ss_dssp             -EECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCCCHHHHHHHHHHHHHHTCTTTS
T ss_pred             -ccccccccccccccccccchhHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcccc
Confidence             11111111                222211 22222211    489999999999984

>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}

Probab=98.68  E-value=1.8e-07  Score=94.11  Aligned_cols=158  Identities=15%  Similarity=0.054  Sum_probs=104.4

Q ss_pred             HHHHHHHHHhccCCCCCCCCCCC----CCCchhHHHHHHHHHHhcCCCCCC---CHHHHHHHHHhccCCCCCcccC--C-
Q 026402           54 EEDVISWILKCQDESGGFAGNIG----HDPHVLYTLSAVQVLALFDKVDIL---DADKVSNYIVGLQNEDGSFSGD--I-  123 (239)
Q Consensus        54 ~~~~i~~l~~~q~~dGgf~~~~~----~~~~~~~T~~al~~L~~l~~~~~~---~~~~~~~~l~~~Q~~dGgf~~~--~-  123 (239)
                      .++++++++++|++||||+.++.    ..++.+.|.+++..|..+...-.+   ..+++++||.+.|.+||+|...  . 
T Consensus       985 i~~g~~~ll~~q~~dGgf~~f~~~~~~~~~s~wlTAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~ 1064 (1451)
T 4acq_A          985 LNTGYQRQLNYKHYDGSYSTFGERYGRNQGNTWLTAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLL 1064 (1451)
T ss_dssp             HHHHHHHHGGGBCTTSCBCSSTTGGGCCCCCHHHHHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECCCCCCS
T ss_pred             HHHHHHHHHhhcCCCCCeeeccCCCCCCCCchhHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccCCcccccCccc
Confidence            45788999999999999999864    468899999999999887653222   3688999999999999999742  1 


Q ss_pred             -----CC-CCCcchhHHHHhHHHhhccC-ChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCC
Q 026402          124 -----WG-EVDTRFSYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV  196 (239)
Q Consensus       124 -----~~-~~d~~~ty~al~~l~~l~~~-~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~  196 (239)
                           ++ +.++..|..++.+|...+.. ....++++++||.+.-..   +.. .....+++.....-.||++++.  ..
T Consensus      1065 ~~~m~gg~~~~~~lTAyvl~aL~~~g~~~~~~~i~~A~~~L~~~~~~---~~~-~~~~~~~y~~AllAyAlal~g~--~~ 1138 (1451)
T 4acq_A         1065 NNAIKGGVEDEVTLSAYITIALLEIPLTVTHPVVRNALFCLESAWKT---AQE-GDHGSHVYTKALLAYAFALAGN--QD 1138 (1451)
T ss_dssp             CGGGCCSCSCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHH---HTS-SCSSSTHHHHHHHHHHHHHHTC--HH
T ss_pred             chhhcCCCCCCccchHHHHHHHHHcCCCCCCHHHHHHHHHHHHhhhh---ccc-ccccCChHHHHHHHHHHHhcCC--hh
Confidence                 11 23455566677777666653 234688999999865211   110 0112345555555556677764  22


Q ss_pred             CHHHHHHHHHhccccCCccCC
Q 026402          197 DKDLLGWWLCERQVKSGGLNG  217 (239)
Q Consensus       197 ~~~~~~~~L~~~Q~~~GGf~~  217 (239)
                      ..+.+++-|.+....+||...
T Consensus      1139 ~~~~~l~~L~~~a~~~~~~~~ 1159 (1451)
T 4acq_A         1139 KRKEVLKSLNEEAVKKDNSVH 1159 (1451)
T ss_dssp             HHHHHHHHHHHHCCBCSSCBC
T ss_pred             HHHHHHHHHHHHhhccCCcee
Confidence            234466666666666666333

>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A

Probab=98.60  E-value=4e-07  Score=93.09  Aligned_cols=198  Identities=14%  Similarity=0.046  Sum_probs=120.6

Q ss_pred             HHHHHHHHH-------HcccCCCCccccccccchHHHHHHHHHHHHhhCCCC---CcCHHHHHHHHHh-ccCCCCCCCCC
Q 026402            6 ADKHVKYII-------SVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD---AVDEEDVISWILK-CQDESGGFAGN   74 (239)
Q Consensus         6 ~~~~~~yl~-------~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~---~~~~~~~i~~l~~-~q~~dGgf~~~   74 (239)
                      +++++++|+       +.|++||+|..|...+.+.|.|-|++..|..+....   +...+++++||.+ .|++||.|...
T Consensus      1042 ~~~~~~~i~~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~ 1121 (1676)
T 3cu7_A         1042 KQKLKKKLKEGMLSIMSYRNADYSYSVWKGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKEN 1121 (1676)
T ss_dssp             HHHHHHHHHHHHHHGGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBCCC
T ss_pred             HHHHHHHHHHHHHHHhhccCCCCCccccCCCCCcEEEeHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhCCCCCcccCC
Confidence            445666644       578899999999777889999999999998876532   2246789999999 99999998643


Q ss_pred             CC--------CC------CchhHHHHHHHHHHhcCCCC---C--CCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHH-
Q 026402           75 IG--------HD------PHVLYTLSAVQVLALFDKVD---I--LDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYI-  134 (239)
Q Consensus        75 ~~--------~~------~~~~~T~~al~~L~~l~~~~---~--~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~-  134 (239)
                      ..        ..      +++..|.+++.+|...+...   .  ..+.++++||.+....   +       .+. ++-+ 
T Consensus      1122 ~~~~~~~~~gg~~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~i~~a~~yL~~~~~~---~-------~~~-y~~A~ 1190 (1676)
T 3cu7_A         1122 SQYQPIKLQGTLPVEARENSLYLTAFTVIGIRKAFDICPLVKIDTALIKADNFLLENTLP---A-------QST-FTLAI 1190 (1676)
T ss_dssp             SSCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHTGGGSCCHHHHHHHHHHHHHHHHHHSS---C-------SCH-HHHHH
T ss_pred             ccccchhhcCCcccccccCccccHHHHHHHHHhcccccCCcccHHHHHHHHHHHHHhhhc---c-------CCH-HHHHH
Confidence            11        00      13445666676665443220   1  1246788999775322   1       111 1211 


Q ss_pred             HHhHHHhhccCChhcHHHHHHHHHhccCCCC------CccCCCC-----C---C--CchhhHHHHHHHHHHhCCCCCCCH
Q 026402          135 AICCLSILQRLDKINVDKAVEYIVSCKNLDG------GFGCTPG-----G---E--SHSGQIFCCVGALAIAGALHHVDK  198 (239)
Q Consensus       135 al~~l~~l~~~~~~~~~~~~~~l~~~Q~~dG------Gf~~~~~-----~---~--s~~~~T~~al~aL~~l~~~~~~~~  198 (239)
                      +..+|.+.+... ...+++++.|.+....+|      -|...+.     .   .  .+...|.++|.+|...+  +....
T Consensus      1191 lA~Al~l~g~~~-~~a~~~l~~L~~~a~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ve~tayaLlall~~~--~~~~~ 1267 (1676)
T 3cu7_A         1191 SAYALSLGDKTH-PQFRSIVSALKREALVKGNPPIYRFWKDNLQHKDSSVPNTGTARMVETTAYALLTSLNLK--DINYV 1267 (1676)
T ss_dssp             HHHHHTTSCTTC-HHHHHHHHHHHHHCEEETTTTSEEECCSCSSCCSSCCCSCCCHHHHHHHHHHHHHHHHTT--CHHHH
T ss_pred             HHHHHHhcCCch-hhHHHHHHHHHhhhhhccCCccccCCCCCCCCccccccCCCccchHHHHHHHHHHHHhcC--ChhHH
Confidence            112233344422 115666777776554332      2332210     0   1  24567888887776654  23346


Q ss_pred             HHHHHHHHhccccCCccCC
Q 026402          199 DLLGWWLCERQVKSGGLNG  217 (239)
Q Consensus       199 ~~~~~~L~~~Q~~~GGf~~  217 (239)
                      .+.++||.+.|+..|||..
T Consensus      1268 ~~iv~wL~~qr~~~Gg~~S 1286 (1676)
T 3cu7_A         1268 NPVIKWLSEEQRYGGGFYS 1286 (1676)
T ss_dssp             HHHHHHHHHHSCSSSCCST
T ss_pred             HHHHHHHHhccCCCCCccc
Confidence            7889999998888899974

>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*

Probab=98.59  E-value=5.6e-09  Score=105.74  Aligned_cols=189  Identities=14%  Similarity=0.147  Sum_probs=0.0

Q ss_pred             HHHHHHHH-------HcccCCCCccccccccchHHHHHHHHHHHHhhCCC----CCcCHHHHHHHHHh-ccCCCCCCCCC
Q 026402            7 DKHVKYII-------SVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL----DAVDEEDVISWILK-CQDESGGFAGN   74 (239)
Q Consensus         7 ~~~~~yl~-------~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~----~~~~~~~~i~~l~~-~q~~dGgf~~~   74 (239)
                      +++.+||+       +.|++||+|..|...+...|.|.|++..|......    ++....++++||.+ +|++||.|...
T Consensus      1026 ~ka~~~i~~Gyqr~l~yq~~DGsfs~w~~~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~ 1105 (1642)
T 3prx_B         1026 TEAVNQIVTGYAQQMVYKKADHSYAAFTNRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKEN 1105 (1642)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCeecCCCCCCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCccccc
Confidence            34555554       47789999999987778999999999999877653    22357889999998 89999999753


Q ss_pred             C--------C----CCCchhHHHHHHHHHHhcCCC-----C--CCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHH-
Q 026402           75 I--------G----HDPHVLYTLSAVQVLALFDKV-----D--ILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYI-  134 (239)
Q Consensus        75 ~--------~----~~~~~~~T~~al~~L~~l~~~-----~--~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~-  134 (239)
                      .        |    .+.++..|.+.+.+|...+..     .  ...+++++.||.+.-..             +...|. 
T Consensus      1106 ~~v~~~~m~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~~~~~~~~~i~~a~~~L~~~~~~-------------~~~~Y~~ 1172 (1642)
T 3prx_B         1106 APVLSGTMQGGIQGAEEEVYLTAFILVALLESKTICNDYVNSLDSSIKKATNYLLKKYEK-------------LQRPYTT 1172 (1642)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccchhccCCccCCCCcccchHHHHHHHHhcccccccccccchHHHHHHHHHHHHhhhc-------------CCCHHHH
Confidence            2        1    134566777777766554321     1  12467888899765321             001121 


Q ss_pred             HHh--HHHhhccCChhcHHHHHHHHHhccCCCCCccCCCC-CCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhcccc
Q 026402          135 AIC--CLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPG-GESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVK  211 (239)
Q Consensus       135 al~--~l~~l~~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~-~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~  211 (239)
                      |+.  +|.+.+...   .+.+.++. +.   +.-+-..++ ...+...|.|||.++..++.  .......++||.+.|+.
T Consensus      1173 Ai~aYAl~l~~~~~---~~~l~~l~-~~---~~~~W~~~~~~~~~VE~TaYaLLa~l~~~~--~~~a~~iv~WL~~qr~~ 1243 (1642)
T 3prx_B         1173 ALTAYALAAADQLN---DDRVLMAA-ST---GRDHWEEYNAHTHNIEGTSYALLALLKMKK--FDQTGPIVRWLTDQNFY 1243 (1642)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHhcCCch---HHHHHHHH-hc---CCCCCCCCCCchHHHHHHHHHHHHHhccCc--hhhHHHHHHHHHHhccC
Confidence            111  122333321   11111111 11   222222232 23577899999976655543  34567889999999999


Q ss_pred             CCccCC
Q 026402          212 SGGLNG  217 (239)
Q Consensus       212 ~GGf~~  217 (239)
                      .|||..
T Consensus      1244 ~Ggf~S 1249 (1642)
T 3prx_B         1244 GETYGQ 1249 (1642)
T ss_dssp             ------
T ss_pred             CCcccC
Confidence            999974

>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*

Probab=98.56  E-value=4.9e-07  Score=79.04  Aligned_cols=132  Identities=14%  Similarity=0.037  Sum_probs=90.3

Q ss_pred             HHHHHHHHHhhCCCCCcCHHHHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCCC-C----CCHHHHH----
Q 026402           36 AYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVD-I----LDADKVS----  106 (239)
Q Consensus        36 ~y~al~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~-~----~~~~~~~----  106 (239)
                      .-+++.+|-..|...   .++.++.|+..|. +++|.  .+...++..|..|+++|..+++.. .    ..+++++    
T Consensus       139 ~sL~vLALC~~g~~v---~~~~v~~Ll~~~~-~~~~~--~g~~~sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~al~~l~  212 (414)
T 2bb6_A          139 YSLGILALCVHQKRV---HDSVVGKLLYAVE-HKPHL--LQDHVSVDTMAMAGMAFSCLELSNLNPKQRNRINLALKRVQ  212 (414)
T ss_dssp             HHHHHHHHHHTTCCC---CHHHHHHHHHHHH-SSSCS--CCTTTHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCc---cHHHHHHHHHHhh-ccCcC--CCCcccccHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH
Confidence            344555555666543   4557777777665 44553  233457889999999998875411 1    1145555    


Q ss_pred             HHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCCh---hcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHH
Q 026402          107 NYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDK---INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC  183 (239)
Q Consensus       107 ~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~---~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~a  183 (239)
                      ++|.+.|++||+|+       ++.+|-.|+.+|...+....   .+..+++++|++ |.+||+|.       ++-.|..+
T Consensus       213 ~~l~~~Q~~dG~FG-------N~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~~dG~F~-------np~ataQ~  277 (414)
T 2bb6_A          213 EKILKAQTPEGYFG-------NVYSTPLALQLLMGSLRPSVELGTACLKAKAALQA-SLQHKTFQ-------NPLMISQL  277 (414)
T ss_dssp             HHHHHTBCTTSCBS-------STTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HHTTTCCC-------SHHHHHHH
T ss_pred             HHHHHhhcCCCCcc-------chhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH-hccCCCCC-------ChHHHHHH
Confidence            88889999999997       45668888888887776332   367789999999 99999996       44567777


Q ss_pred             HHHHH
Q 026402          184 VGALA  188 (239)
Q Consensus       184 l~aL~  188 (239)
                      +-+|.
T Consensus       278 lpaL~  282 (414)
T 2bb6_A          278 LPVLN  282 (414)
T ss_dssp             HHHTT
T ss_pred             HHHhc
Confidence            75443

>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}

Probab=98.29  E-value=8.8e-06  Score=83.20  Aligned_cols=141  Identities=18%  Similarity=0.145  Sum_probs=92.1

Q ss_pred             HHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCCCCCC---HHHHHHHHHh-ccCCCCCcccCC--------
Q 026402           56 DVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVG-LQNEDGSFSGDI--------  123 (239)
Q Consensus        56 ~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~-~Q~~dGgf~~~~--------  123 (239)
                      .+++-+++.|++||||+++++.+++.+.|.+++..|..+...-.++   .+++++||.+ .|.+||.|....        
T Consensus      1050 ~g~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~ 1129 (1661)
T 2b39_A         1050 KGYTQQLAFRQKSSAYAAFQYRPPSTWLTAYVVKVFALAANLIAIDSKDLCETVKWLILEKQKPDGIFQEDGPVIHQEMI 1129 (1661)
T ss_dssp             HHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHTBCTTSCBCCCSCCCCTTSC
T ss_pred             HHHHHHHHhhcCCCCccccCCCCCchhhhHHHHHHHHhhhhcccCCHHHHHHHHHHhhHhhCCCCCccccccceechhhc
Confidence            3555567899999999999988899999999999998887654444   5789999995 999999996421        


Q ss_pred             CC-----CCCcchhHHHHhHHHhhccC-------ChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhC
Q 026402          124 WG-----EVDTRFSYIAICCLSILQRL-------DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAG  191 (239)
Q Consensus       124 ~~-----~~d~~~ty~al~~l~~l~~~-------~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~  191 (239)
                      ++     ++++..|..++.+|...+..       ....++++++||.+....          ..+++.....-.||++++
T Consensus      1130 gg~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~~~i~~a~~yL~~~~~~----------~~~~y~~A~layAL~l~g 1199 (1661)
T 2b39_A         1130 GGFRDTREKDVSLTAFVLIALHEAKDICEAQVNSLGRSIAKAGDFLENHYRE----------LRRPYTVAIAAYALALLG 1199 (1661)
T ss_dssp             CCTTCCTTSSHHHHHHHHHHHHHTTTTTTTTCSSHHHHHHHHHHHHHHHTTT----------CCSHHHHHHHHHHHHHTT
T ss_pred             CCccccccCccccHHHHHHHHHhccccccccCcchhHHHHHHHHHHHHhhhc----------cCCHHHHHHHHHHHHHcC
Confidence            11     12444455556665544332       123567899999775321          133333333334455565


Q ss_pred             CCCCCCHHHHHHHHHhccc
Q 026402          192 ALHHVDKDLLGWWLCERQV  210 (239)
Q Consensus       192 ~~~~~~~~~~~~~L~~~Q~  210 (239)
                      ..    .+++++.|.....
T Consensus      1200 ~~----a~~~l~~L~~~~~ 1214 (1661)
T 2b39_A         1200 KL----EGDRLTKFLNTAK 1214 (1661)
T ss_dssp             CC----CHHHHHHHHHHSB
T ss_pred             Cc----HHHHHHHHHhhcc
Confidence            43    4666777776544

>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*

Probab=98.25  E-value=8.9e-05  Score=70.33  Aligned_cols=90  Identities=20%  Similarity=0.207  Sum_probs=68.8

Q ss_pred             hHHHHHHHHHHHHhhCCCC---CcC-------HHHHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCCCCCC
Q 026402           32 RLNGAYWGLTTLDILGKLD---AVD-------EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD  101 (239)
Q Consensus        32 ~~~~~y~al~~l~ll~~~~---~~~-------~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~  101 (239)
                      .+.-..|++..|...++..   +..       .+.+++-+++.|++||||+++++..++.+.|.+++..|..+...-.++
T Consensus       338 ~~~p~i~v~~yl~~t~q~~~l~~~~~~~a~~~l~~gyqrll~~q~~DGsfs~w~~~~~s~wLTAyV~~~l~~A~~~i~id  417 (767)
T 4fxk_B          338 YLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGS  417 (767)
T ss_dssp             GTHHHHHHHHHHHHTCTTTTSCSSHHHHHHHHHHHHHHHHTTTBCTTSCBBSSSSSCBCHHHHHHHHHHHHHTCSSSSCC
T ss_pred             hhhhhhhHHHHHHhhhhhcccCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCchhHHHHHHHHHHHHhhcCcc
Confidence            3434567777777766532   111       344566677899999999999999999999999999999887655444


Q ss_pred             ---HHHHHHHHHhccCCCCCccc
Q 026402          102 ---ADKVSNYIVGLQNEDGSFSG  121 (239)
Q Consensus       102 ---~~~~~~~l~~~Q~~dGgf~~  121 (239)
                         ...++.||.+.|.+||.|..
T Consensus       418 ~~~i~~a~~wL~~~Q~~~G~f~e  440 (767)
T 4fxk_B          418 PEKLQETSNWLLSQQQADGSFQD  440 (767)
T ss_dssp             HHHHHHHHHHHHHTBCTTSCBCC
T ss_pred             hHHHHHHHHHHHHhhhhcccchh
Confidence               56788999999999999974

>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*

Probab=98.19  E-value=5.8e-06  Score=72.29  Aligned_cols=116  Identities=14%  Similarity=0.052  Sum_probs=76.4

Q ss_pred             HHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCC-----hhcHHHHH----HHH
Q 026402           87 AVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLD-----KINVDKAV----EYI  157 (239)
Q Consensus        87 al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~-----~~~~~~~~----~~l  157 (239)
                      ++.+|...+.  .+. .+.+..|...|. +++|...  +..|+-.+-.|+.+|..+++-.     ...+++++    ++|
T Consensus       142 ~vLALC~~g~--~v~-~~~v~~Ll~~~~-~~~~~~g--~~~sVDT~AMA~lAL~C~~~~~~~~~~~~~i~~al~~l~~~l  215 (414)
T 2bb6_A          142 GILALCVHQK--RVH-DSVVGKLLYAVE-HKPHLLQ--DHVSVDTMAMAGMAFSCLELSNLNPKQRNRINLALKRVQEKI  215 (414)
T ss_dssp             HHHHHHHTTC--CCC-HHHHHHHHHHHH-SSSCSCC--TTTHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCC--Ccc-HHHHHHHHHHhh-ccCcCCC--CcccccHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHH
Confidence            5555555543  222 445555556554 3455411  2235666766777777766421     12345555    888


Q ss_pred             HhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCC---CCHHHHHHHHHhccccCCccC
Q 026402          158 VSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHH---VDKDLLGWWLCERQVKSGGLN  216 (239)
Q Consensus       158 ~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~---~~~~~~~~~L~~~Q~~~GGf~  216 (239)
                      ++.|++||+|+       +.+.|..|+.+|...+....   ++..++++||++ |.++|+|.
T Consensus       216 ~~~Q~~dG~FG-------N~~ST~lA~QAL~~~~~~~~~~~w~~~~a~~~Ll~-q~~dG~F~  269 (414)
T 2bb6_A          216 LKAQTPEGYFG-------NVYSTPLALQLLMGSLRPSVELGTACLKAKAALQA-SLQHKTFQ  269 (414)
T ss_dssp             HHTBCTTSCBS-------STTTHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-HHTTTCCC
T ss_pred             HHhhcCCCCcc-------chhhHHHHHHHHHhcCCCcccccchHHHHHHHHHH-hccCCCCC
Confidence            88999999997       45679999999988875321   466789999998 99999997

>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A

Probab=97.97  E-value=5.4e-05  Score=77.56  Aligned_cols=143  Identities=12%  Similarity=0.041  Sum_probs=88.5

Q ss_pred             HHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCCCCCC---HHHHHHHHHh-ccCCCCCcccCCC---CC----
Q 026402           58 ISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD---ADKVSNYIVG-LQNEDGSFSGDIW---GE----  126 (239)
Q Consensus        58 i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~---~~~~~~~l~~-~Q~~dGgf~~~~~---~~----  126 (239)
                      ++-+++.|++||||+++.+..++.+.|.+++..|..+...-.++   .+++++||.+ .|.+||.|.....   .+    
T Consensus      1053 ~~r~l~~q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg 1132 (1676)
T 3cu7_A         1053 MLSIMSYRNADYSYSVWKGGSASTWLTAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKENSQYQPIKLQGT 1132 (1676)
T ss_dssp             HHHGGGGBCTTSCBCSSSSSCCCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBCCCSSCCCCCCCSC
T ss_pred             HHHHhhccCCCCCccccCCCCCcEEEeHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhCCCCCcccCCccccchhhcCC
Confidence            33456789999999999888899999999999998876543444   5789999999 9999999964211   00    


Q ss_pred             -------CCcchhHHHHhHHHhhccC-----ChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCC
Q 026402          127 -------VDTRFSYIAICCLSILQRL-----DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALH  194 (239)
Q Consensus       127 -------~d~~~ty~al~~l~~l~~~-----~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~  194 (239)
                             +++..|..++.+|...+..     ....++++++||.+....          ..+++.....-.||++++.  
T Consensus      1133 ~~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~i~~a~~yL~~~~~~----------~~~~y~~A~lA~Al~l~g~-- 1200 (1676)
T 3cu7_A         1133 LPVEARENSLYLTAFTVIGIRKAFDICPLVKIDTALIKADNFLLENTLP----------AQSTFTLAISAYALSLGDK-- 1200 (1676)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTGGGSCCHHHHHHHHHHHHHHHHHHSS----------CSCHHHHHHHHHHHTTSCT--
T ss_pred             cccccccCccccHHHHHHHHHhcccccCCcccHHHHHHHHHHHHHhhhc----------cCCHHHHHHHHHHHHhcCC--
Confidence                   1333444455555443332     123567899999765321          1233332222223334433  


Q ss_pred             CCC-HHHHHHHHHhccccC
Q 026402          195 HVD-KDLLGWWLCERQVKS  212 (239)
Q Consensus       195 ~~~-~~~~~~~L~~~Q~~~  212 (239)
                      ... .+++++.|.+.....
T Consensus      1201 ~~~~a~~~l~~L~~~a~~~ 1219 (1676)
T 3cu7_A         1201 THPQFRSIVSALKREALVK 1219 (1676)
T ss_dssp             TCHHHHHHHHHHHHHCEEE
T ss_pred             chhhHHHHHHHHHhhhhhc
Confidence            222 566777887765433

>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*

Probab=97.95  E-value=1.8e-05  Score=68.84  Aligned_cols=126  Identities=17%  Similarity=0.112  Sum_probs=87.4

Q ss_pred             HHHHHHhhCCCCCcCHHHHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCC---CC--C-----C--CHHHHH
Q 026402           39 GLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDK---VD--I-----L--DADKVS  106 (239)
Q Consensus        39 al~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~---~~--~-----~--~~~~~~  106 (239)
                      ++..|++--...+ ...+.++-|...|+.||+       .-++..+..|+++|..+.+   ..  .     +  -+++++
T Consensus       118 sL~vLALC~~~~~-v~~~~v~kLl~~~~~~g~-------~~sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~~ai~~~~  189 (399)
T 2pmv_A          118 SLAILALCQKNSE-ATLPIAVRFAKTLLANSS-------PFNVDTGAMATLALTCMYNKIPVGSEEGYRSLFGQVLKDIV  189 (399)
T ss_dssp             HHHHHHHHHHCHH-HHHHHHHHHHHHHHHCCS-------CCCHHHHHHHHHHHHHHHTBCCTTCCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCC-CCHHHHHHHHHHHHccCC-------cccchHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHH
Confidence            4555554422211 356777778888887742       2357888888888877754   11  0     1  157788


Q ss_pred             HHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccC--ChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHH
Q 026402          107 NYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRL--DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCV  184 (239)
Q Consensus       107 ~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~--~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al  184 (239)
                      ++|.+.|++||+|+       |+.+|--|+.+|...+..  ...+..++.++|++ |..||+|+       ++-.|...+
T Consensus       190 ~~l~~~q~~dG~fG-------n~yST~LA~QAL~~~~~~~~~~W~c~~al~~l~~-q~~~G~F~-------np~~taQil  254 (399)
T 2pmv_A          190 EKISMKIKDNGIIG-------DIYSTGLAMQALSVTPEPSKKEWNCKKTTDMILN-EIKQGKFH-------NPMSIAQIL  254 (399)
T ss_dssp             HHHTTSBCTTSCBS-------SHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHHH-HHTTTTTC-------SHHHHHHHH
T ss_pred             HHHHHhhcCCCccc-------ccccHHHHHHHHHhcCCCccccccHHHHHHHHHH-HhhCCCcC-------CHHHHHHHH
Confidence            99999999999997       567777788888777652  22378899999998 99999996       455677666


Q ss_pred             HHH
Q 026402          185 GAL  187 (239)
Q Consensus       185 ~aL  187 (239)
                      -+|
T Consensus       255 PaL  257 (399)
T 2pmv_A          255 PSL  257 (399)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            444

>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*

Probab=97.89  E-value=2.8e-05  Score=67.66  Aligned_cols=100  Identities=12%  Similarity=0.040  Sum_probs=73.1

Q ss_pred             HHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhcc---CC---------hhcHHHHHHHHHhccCCCCCccC
Q 026402          102 ADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQR---LD---------KINVDKAVEYIVSCKNLDGGFGC  169 (239)
Q Consensus       102 ~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~---~~---------~~~~~~~~~~l~~~Q~~dGGf~~  169 (239)
                      ..+.+.-|...|+.||+    +   .++..+..|+.+|..+..   ..         ...+++++++|++.|++||+|+ 
T Consensus       132 ~~~~v~kLl~~~~~~g~----~---~sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~i~~ai~~~~~~l~~~q~~dG~fG-  203 (399)
T 2pmv_A          132 TLPIAVRFAKTLLANSS----P---FNVDTGAMATLALTCMYNKIPVGSEEGYRSLFGQVLKDIVEKISMKIKDNGIIG-  203 (399)
T ss_dssp             HHHHHHHHHHHHHHCCS----C---CCHHHHHHHHHHHHHHHTBCCTTCCSSHHHHHHHHHHHHHHHHTTSBCTTSCBS-
T ss_pred             CHHHHHHHHHHHHccCC----c---ccchHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHhhcCCCccc-
Confidence            45667777777777742    1   244445555666655544   11         1246778899999999999996 


Q ss_pred             CCCCCCchhhHHHHHHHHHHhCCC--CCCCHHHHHHHHHhccccCCccC
Q 026402          170 TPGGESHSGQIFCCVGALAIAGAL--HHVDKDLLGWWLCERQVKSGGLN  216 (239)
Q Consensus       170 ~~~~~s~~~~T~~al~aL~~l~~~--~~~~~~~~~~~L~~~Q~~~GGf~  216 (239)
                            +.+.|.-|+.||...+..  ..++..++++||+. |..+|+|.
T Consensus       204 ------n~yST~LA~QAL~~~~~~~~~~W~c~~al~~l~~-q~~~G~F~  245 (399)
T 2pmv_A          204 ------DIYSTGLAMQALSVTPEPSKKEWNCKKTTDMILN-EIKQGKFH  245 (399)
T ss_dssp             ------SHHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHHH-HHTTTTTC
T ss_pred             ------ccccHHHHHHHHHhcCCCccccccHHHHHHHHHH-HhhCCCcC
Confidence                  688999999999998863  34588999999998 99999997

>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*

Probab=97.37  E-value=2.6e-05  Score=79.29  Aligned_cols=107  Identities=14%  Similarity=0.139  Sum_probs=0.0

Q ss_pred             HHHHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCCCC-C---CHHHHHHHHHh-ccCCCCCcccCC-----
Q 026402           54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDI-L---DADKVSNYIVG-LQNEDGSFSGDI-----  123 (239)
Q Consensus        54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~-~---~~~~~~~~l~~-~Q~~dGgf~~~~-----  123 (239)
                      .+.+++-+++.|++||||+.+.+.+++.+.|.+++..|......-. +   -..++++||.+ +|++||+|....     
T Consensus      1032 i~~Gyqr~l~yq~~DGsfs~w~~~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~~~v~~~ 1111 (1642)
T 3prx_B         1032 IVTGYAQQMVYKKADHSYAAFTNRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKENAPVLSG 1111 (1642)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcCCCCCeecCCCCCCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCcccccccccch
Confidence            3445566677899999999998777899999999998887755322 3   36789999998 899999996431     


Q ss_pred             ---C----CCCCcchhHHHHhHHHhhccC-------ChhcHHHHHHHHHhc
Q 026402          124 ---W----GEVDTRFSYIAICCLSILQRL-------DKINVDKAVEYIVSC  160 (239)
Q Consensus       124 ---~----~~~d~~~ty~al~~l~~l~~~-------~~~~~~~~~~~l~~~  160 (239)
                         +    .+.++..|..++.+|.-.+..       ....+++++.||.+.
T Consensus      1112 ~m~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~~~~~~~~~i~~a~~~L~~~ 1162 (1642)
T 3prx_B         1112 TMQGGIQGAEEEVYLTAFILVALLESKTICNDYVNSLDSSIKKATNYLLKK 1162 (1642)
T ss_dssp             ---------------------------------------------------
T ss_pred             hccCCccCCCCcccchHHHHHHHHhcccccccccccchHHHHHHHHHHHHh
Confidence               1    123455554455554333321       123578899999754

>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*

Probab=96.23  E-value=0.0086  Score=56.95  Aligned_cols=99  Identities=19%  Similarity=0.210  Sum_probs=61.9

Q ss_pred             HHHHHHHHHccc---CCCCccccccccchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhccCCCCCCCCCCCC--C
Q 026402            7 DKHVKYIISVEK---KKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGH--D   78 (239)
Q Consensus         7 ~~~~~yl~~~q~---~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~--~   78 (239)
                      ++.++-+++..+   .||.+..   -.+-+..|.|    ++++...   ......+.++||+..|.+||+|+.....  .
T Consensus        57 ~~Lie~VK~~l~~~~~~g~~g~---~S~S~YDTAW----VAmvp~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~  129 (817)
T 3sdr_A           57 EVLVSEIKAMLNPAITGDGESM---ITPSAYDTAW----VARVPAIDGSARPQFPQTVDWILKNQLKDGSWGIQSHFLLS  129 (817)
T ss_dssp             HHHHHHHHHHHHHHHTSSCCCC---CCCCHHHHHH----HHTCBCTTSCSSBSSHHHHHHHHHCCCTTSCCSCTTCCCHH
T ss_pred             HHHHHHHHHHhccccCCCCCcc---cccCHHHhhH----HheeecCCCCCCCCchHHHHHHHHccCCCCCCCCCCCcchH
Confidence            445556666554   4551111   1345566888    3444332   1225689999999999999999864321  1


Q ss_pred             CchhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcc
Q 026402           79 PHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQ  113 (239)
Q Consensus        79 ~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q  113 (239)
                      ..+.+|++|+.+|..-+. ....+++++.||.+.-
T Consensus       130 d~ll~TlAcvlAL~~w~~-~~~~i~~Gl~fl~~nl  163 (817)
T 3sdr_A          130 DRLLATLSCVLVLLKWNV-GDLQVEQGIEFIKSNL  163 (817)
T ss_dssp             HHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence            246899999998876442 2224678888888753

>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*

Probab=96.04  E-value=0.098  Score=49.77  Aligned_cols=57  Identities=19%  Similarity=0.103  Sum_probs=38.9

Q ss_pred             HHHHHHHHHcccCCCCcccccc--ccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhc
Q 026402            7 DKHVKYIISVEKKKDSFESVVM--EHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKC   64 (239)
Q Consensus         7 ~~~~~yl~~~q~~dg~~~~~~~--~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~   64 (239)
                      ...++||..-|.+||+|+....  ..-++-.|.-||.+|.--+..+ ..+++++.||.+.
T Consensus       104 p~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~~~-~~i~~Gl~fl~~n  162 (817)
T 3sdr_A          104 PQTVDWILKNQLKDGSWGIQSHFLLSDRLLATLSCVLVLLKWNVGD-LQVEQGIEFIKSN  162 (817)
T ss_dssp             HHHHHHHHHCCCTTSCCSCTTCCCHHHHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccCCH-HHHHHHHHHHHHH
Confidence            4678999999999999974211  1224555666676666544332 3688899999875

>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}

Probab=96.04  E-value=0.01  Score=56.11  Aligned_cols=95  Identities=15%  Similarity=0.212  Sum_probs=60.1

Q ss_pred             HHHHHHHHHccc--CCCCccccccccchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhccCCCCCCCCCCCCC--C
Q 026402            7 DKHVKYIISVEK--KKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGHD--P   79 (239)
Q Consensus         7 ~~~~~yl~~~q~--~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~~--~   79 (239)
                      +..++-|++..+  .+|..      .+-+..|.|+    +++...   ......+.++||+..|.+||+|+......  .
T Consensus        34 ~~~~~~i~~~~~~~~~g~~------S~S~YDTAWV----amvp~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d  103 (785)
T 3s9v_A           34 ETLISEIKNMFRCMGYGET------NPSAYDTAWV----ARIPAVDGSDNPHFPETVEWILQNQLKDGSWGEGFYFLAYD  103 (785)
T ss_dssp             HHHHHHHHHHHHHCSSCCC------CCCHHHHHHH----TTSBCTTSCSSBSSHHHHHHHHHCCCTTSCCSCSSSCCHHH
T ss_pred             HHHHHHHHHHhhcCCCCcc------cCcHHHhhHH----hccccCCCCCCCCchHHHHHHHHccCCCCCCCCCCCCchHH
Confidence            344555555543  33432      2445567883    333322   12256899999999999999998643211  2


Q ss_pred             chhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhc
Q 026402           80 HVLYTLSAVQVLALFDKVDILDADKVSNYIVGL  112 (239)
Q Consensus        80 ~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~  112 (239)
                      .+.+|++|+.+|..-+. ....+++++.||.+.
T Consensus       104 ~l~~TlAcvlAL~~w~~-~~~~i~~Gl~fl~~n  135 (785)
T 3s9v_A          104 RILATLACIITLTLWRT-GETQVQKGIEFFRTQ  135 (785)
T ss_dssp             HHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHH
Confidence            37899999999876442 222478888888765

>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*

Probab=95.98  E-value=0.12  Score=48.75  Aligned_cols=57  Identities=9%  Similarity=0.060  Sum_probs=38.3

Q ss_pred             HHHHHHHHHcccCCCCccccc--cccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhc
Q 026402            7 DKHVKYIISVEKKKDSFESVV--MEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKC   64 (239)
Q Consensus         7 ~~~~~yl~~~q~~dg~~~~~~--~~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~   64 (239)
                      ...++||..-|.+||+|+...  ....++-.|.-||.+|.-=+..+ ..+++++.||.+.
T Consensus        56 p~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~~~-~~i~~Gl~fl~~n  114 (764)
T 3p5p_A           56 PQALNWVFNNQLQDGSWGIESHFSLCDRLLNTTNSVIALSVWKTGH-SQVQQGAEFIAEN  114 (764)
T ss_dssp             HHHHHHHHHCCCTTSCCSCTTSCCHHHHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccCCH-HHHHHHHHHHHHH
Confidence            467899999999999997421  11224555666666666544332 3678888998764

>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*

Probab=95.95  E-value=0.011  Score=55.88  Aligned_cols=100  Identities=14%  Similarity=0.209  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHcccC--CCCccccccccchHHHHHHHHHHHHhh--CCCCCcCHHHHHHHHHhccCCCCCCCCCCCCC--C
Q 026402            6 ADKHVKYIISVEKK--KDSFESVVMEHLRLNGAYWGLTTLDIL--GKLDAVDEEDVISWILKCQDESGGFAGNIGHD--P   79 (239)
Q Consensus         6 ~~~~~~yl~~~q~~--dg~~~~~~~~~~~~~~~y~al~~l~ll--~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~--~   79 (239)
                      ++..++-|++..+.  +|..      .+-+..|.|+ +-.-.+  +........+.++||+..|.+||+|+......  .
T Consensus        10 ~~~~~~~i~~~~~~~~~g~~------S~S~YDTAWV-amvp~~~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d   82 (764)
T 3p5p_A           10 ADELVVKIKDMFNALGDGDI------SPSAYDTAWV-ARLATISSDGSEKPRFPQALNWVFNNQLQDGSWGIESHFSLCD   82 (764)
T ss_dssp             HHHHHHHHHHHHHTCSSCCC------CCCHHHHHHH-HHCEEECTTSCEEESCHHHHHHHHHCCCTTSCCSCTTSCCHHH
T ss_pred             HHHHHHHHHHHHhcCCCCcc------cCcHHHHHHH-HhCccccCCCCCCCCChHHHHHHHHccCCCCCCCCCCCcchHH
Confidence            45566677766553  3332      2445668882 222222  21111257889999999999999998643211  2


Q ss_pred             chhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhcc
Q 026402           80 HVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQ  113 (239)
Q Consensus        80 ~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q  113 (239)
                      .+.+|++||.+|..-+. ....+++++.||.+.-
T Consensus        83 ~ll~TlAcvlAL~~w~~-~~~~i~~Gl~fl~~nl  115 (764)
T 3p5p_A           83 RLLNTTNSVIALSVWKT-GHSQVQQGAEFIAENL  115 (764)
T ss_dssp             HHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence            46899999998876432 2224788888887653

>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*

Probab=95.91  E-value=0.19  Score=47.17  Aligned_cols=57  Identities=16%  Similarity=0.138  Sum_probs=37.7

Q ss_pred             HHHHHHHHHcccCCCCcccccc--ccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhc
Q 026402            7 DKHVKYIISVEKKKDSFESVVM--EHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKC   64 (239)
Q Consensus         7 ~~~~~yl~~~q~~dg~~~~~~~--~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~   64 (239)
                      .+-++||..-|.+||+|+....  ..-++-.|.-||.+|.-=+..+ ..+++++.||.+.
T Consensus        53 p~~~~wil~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~-~~i~rGl~fl~~n  111 (727)
T 3pya_A           53 PSAVKWIAENQLSDGSWGDAYLFSYHDRLINTLACVVALRSWNLFP-HQCNKGITFFREN  111 (727)
T ss_dssp             HHHHHHHHHTCCTTSCCSCSSSCCHHHHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHccCCH-HHHHHHHHHHHHH
Confidence            4578999999999999974321  1124555666666665533322 2688899999764

>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*

Probab=95.05  E-value=0.041  Score=51.57  Aligned_cols=96  Identities=14%  Similarity=0.199  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHccc--CCCCccccccccchHHHHHHHHHHHHhhCCCC-CcCHHHHHHHHHhccCCCCCCCCCCCCC--Cc
Q 026402            6 ADKHVKYIISVEK--KKDSFESVVMEHLRLNGAYWGLTTLDILGKLD-AVDEEDVISWILKCQDESGGFAGNIGHD--PH   80 (239)
Q Consensus         6 ~~~~~~yl~~~q~--~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~-~~~~~~~i~~l~~~q~~dGgf~~~~~~~--~~   80 (239)
                      ++..++-|+++..  .+|...      +-+..|.|+    +++...+ .....+.++||+..|.+||+|+......  ..
T Consensus        11 ~~~~~~~ir~~l~~~~~g~~S------~S~YDTAWV----Amvp~~~~~p~Fp~~~~wil~nQ~~DGsWG~~~~~~~~D~   80 (727)
T 3pya_A           11 FKEAVKSVKTILRNLTDGEIT------ISAYDTAWV----ALIDAGDKTPAFPSAVKWIAENQLSDGSWGDAYLFSYHDR   80 (727)
T ss_dssp             HHHHHHHHHHHHHTCCSCCCC------CCHHHHHHH----HTCBCSSSSBSCHHHHHHHHHTCCTTSCCSCSSSCCHHHH
T ss_pred             HHHHHHHHHHHHHhccCCccc------CcHHHhHHH----hhccCCCCCCCCHHHHHHHHhcCCCCCCCCCCCCcchhhH
Confidence            4555666666554  244332      445668883    3443221 1147899999999999999999643211  13


Q ss_pred             hhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhc
Q 026402           81 VLYTLSAVQVLALFDKVDILDADKVSNYIVGL  112 (239)
Q Consensus        81 ~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~  112 (239)
                      +.+|++|+.+|..-+. ..-.+++++.||.+.
T Consensus        81 ll~TLAcvlAL~~w~~-~~~~i~rGl~fl~~n  111 (727)
T 3pya_A           81 LINTLACVVALRSWNL-FPHQCNKGITFFREN  111 (727)
T ss_dssp             HHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence            6899999998875332 222478888888764

>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}

Probab=93.99  E-value=0.058  Score=51.06  Aligned_cols=101  Identities=21%  Similarity=0.241  Sum_probs=55.4

Q ss_pred             HHHHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCC-CCCC-cch
Q 026402           54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIW-GEVD-TRF  131 (239)
Q Consensus        54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~-~~~d-~~~  131 (239)
                      ++..++-|++..+.- |++.   ..+.++.|.+ |+..-..+......-..+++||...|.+||+|+.... ...| +..
T Consensus        33 ~~~~~~~i~~~~~~~-~~g~---~S~S~YDTAW-Vamvp~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~l~~  107 (785)
T 3s9v_A           33 IETLISEIKNMFRCM-GYGE---TNPSAYDTAW-VARIPAVDGSDNPHFPETVEWILQNQLKDGSWGEGFYFLAYDRILA  107 (785)
T ss_dssp             HHHHHHHHHHHHHHC-SSCC---CCCCHHHHHH-HTTSBCTTSCSSBSSHHHHHHHHHCCCTTSCCSCSSSCCHHHHHHH
T ss_pred             HHHHHHHHHHHhhcC-CCCc---ccCcHHHhhH-HhccccCCCCCCCCchHHHHHHHHccCCCCCCCCCCCCchHHHHHH
Confidence            445666666654321 2221   2466888888 3211111111122347899999999999999986421 1113 334


Q ss_pred             hHHHHhHHHhhccCChhcHHHHHHHHHhc
Q 026402          132 SYIAICCLSILQRLDKINVDKAVEYIVSC  160 (239)
Q Consensus       132 ty~al~~l~~l~~~~~~~~~~~~~~l~~~  160 (239)
                      |-+++.+|.--+ ..+..+++++.||.+.
T Consensus       108 TlAcvlAL~~w~-~~~~~i~~Gl~fl~~n  135 (785)
T 3s9v_A          108 TLACIITLTLWR-TGETQVQKGIEFFRTQ  135 (785)
T ss_dssp             HHHHHHHHHHTT-CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcc-cCHHHHHHHHHHHHHH
Confidence            444443333222 2345788999999753

>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}

Probab=83.09  E-value=8.6  Score=33.81  Aligned_cols=163  Identities=12%  Similarity=0.051  Sum_probs=80.1

Q ss_pred             HHHHHHHHHhcc--CCCCCCCCCCCCCCc--hhHHHHHHHHHHhcCCCC--CC--CHHHHH----HHHHhccCCC-CCcc
Q 026402           54 EEDVISWILKCQ--DESGGFAGNIGHDPH--VLYTLSAVQVLALFDKVD--IL--DADKVS----NYIVGLQNED-GSFS  120 (239)
Q Consensus        54 ~~~~i~~l~~~q--~~dGgf~~~~~~~~~--~~~T~~al~~L~~l~~~~--~~--~~~~~~----~~l~~~Q~~d-Ggf~  120 (239)
                      .++..+||+..+  +++|||.-.......  +...|.++-.|..+....  ..  -.+.++    .+...++.++ |-|.
T Consensus       170 a~~~ad~L~~~~pRt~~Ggf~h~~~~~~q~WiD~lyM~~pfla~~~~~tgd~~~~y~d~A~~q~~~~~~~l~D~~tGL~~  249 (445)
T 3k11_A          170 IQNYFDFIINKEYRLADGTFARNRPQRNTLWLDDMFMGIPAVAQMSRYDKEAKNKYLAEAVKQFLQFADRMFIPEKGLYR  249 (445)
T ss_dssp             HHHHHHHHHHTSCBCTTCCBCBCSSSTTEEETHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHEETTTTEEC
T ss_pred             HHHHHHHHHHcCCCCCCCceeecCCCCCceEecchhhHHHHHHHHHHHHCCcchHHHHHHHHHHHHHHHhcccCCCCCEe
Confidence            455678898877  678998865322222  234456655555443211  11  122232    2333445443 4443


Q ss_pred             cC----CCCCCC---cchhHHHHhHH-HhhccCCh---------hcHHHHHHHHHhccCCCCCccCCCCC---CCchhhH
Q 026402          121 GD----IWGEVD---TRFSYIAICCL-SILQRLDK---------INVDKAVEYIVSCKNLDGGFGCTPGG---ESHSGQI  180 (239)
Q Consensus       121 ~~----~~~~~d---~~~ty~al~~l-~~l~~~~~---------~~~~~~~~~l~~~Q~~dGGf~~~~~~---~s~~~~T  180 (239)
                      ..    ....+.   .|..-|++.++ ..+..++.         ...++.++.++++|.+||-|-.....   ..+.+.|
T Consensus       250 Hg~~~~~~~~~~~~WaRGnGW~~~gl~~~l~~lp~~~~~r~~l~~~~~~~a~~l~~~Q~~~G~W~~vld~~~~y~EsSaT  329 (445)
T 3k11_A          250 HGWVESSTDHPAFCWARANGWALLTACELLDVLPEDYPQRPKVMDYFRAHVRGVTALQSGEGFWHQLLDCNDSYLETSAT  329 (445)
T ss_dssp             SEEETTCSSCCCCCBHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHTTCCTTSCEESBTTCTTSCEEHHHH
T ss_pred             eeecCCCCCCCcceecccchHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHhCCCCCchhhccCCCCCCCCccHH
Confidence            21    101111   22233333333 23332221         23567889999999999998765432   2233333


Q ss_pred             HHHHHHH---HHhCCCCC----CCHHHHHHHHHhccccCCccC
Q 026402          181 FCCVGAL---AIAGALHH----VDKDLLGWWLCERQVKSGGLN  216 (239)
Q Consensus       181 ~~al~aL---~~l~~~~~----~~~~~~~~~L~~~Q~~~GGf~  216 (239)
                      .....+|   ..++.++.    ...+++.+.|..+..++|-..
T Consensus       330 Amfaygllkgvr~G~Ld~~~Y~~~A~ka~~~L~~~i~~dG~l~  372 (445)
T 3k11_A          330 AIYVYCLAHAINKGWIDAIAYGPVAQLGWHAVAGKINEEGQVE  372 (445)
T ss_dssp             HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTBCTTSCBC
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCEe
Confidence            3222222   22344432    124677888888777777553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	239
d3dssb1	325	a.102.4.3 (B:7-331) Rab geranylgeranyltransferase,	4e-91
d3dssb1	325	a.102.4.3 (B:7-331) Rab geranylgeranyltransferase,	3e-14
d3dssb1	325	a.102.4.3 (B:7-331) Rab geranylgeranyltransferase,	1e-07
d3dssb1	325	a.102.4.3 (B:7-331) Rab geranylgeranyltransferase,	6e-07
d2h6fb1	401	a.102.4.3 (B:521-921) Protein farnesyltransferase,	1e-77
d2h6fb1	401	a.102.4.3 (B:521-921) Protein farnesyltransferase,	7e-27
d2h6fb1	401	a.102.4.3 (B:521-921) Protein farnesyltransferase,	2e-25
d1n4qb_	346	a.102.4.3 (B:) Protein farnesyltransferase, beta-s	2e-72
d1n4qb_	346	a.102.4.3 (B:) Protein farnesyltransferase, beta-s	3e-25
d1n4qb_	346	a.102.4.3 (B:) Protein farnesyltransferase, beta-s	5e-25
d1n4qb_	346	a.102.4.3 (B:) Protein farnesyltransferase, beta-s	9e-07
d1w6ka1	448	a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {	4e-08
d1w6ka1	448	a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {	8e-04
d2sqca1	352	a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cycla	0.002

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  269 bits (689), Expect = 4e-91
 Identities = 130/223 (58%), Positives = 173/223 (77%)

Query: 3   ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWIL 62
            L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  +++E+++ +I 
Sbjct: 11  TLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIK 70

Query: 63  KCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGD 122
            CQ E GG + +IGHDPH+LYTLSAVQ+L L+D + +++ DKV  Y+  LQ EDGSF+GD
Sbjct: 71  SCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGD 130

Query: 123 IWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFC 182
           IWGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+C
Sbjct: 131 IWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYC 190

Query: 183 CVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDV 225
           C G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDV
Sbjct: 191 CTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDV 233

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 68.9 bits (168), Expect = 3e-14
 Identities = 31/146 (21%), Positives = 63/146 (43%), Gaps = 3/146 (2%)

Query: 7   DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQD 66
           +K +++++S       F             Y     L I  +L  V+ + +  W+ + Q 
Sbjct: 159 EKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQL 218

Query: 67  ESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGE 126
            SGG  G     P V Y+   +  L +  ++  +D +K+ ++I+  Q+E+     D  G+
Sbjct: 219 PSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGD 278

Query: 127 -VDTRFSYIAICCLSILQ--RLDKIN 149
            VD   +   I  LS+L   ++  ++
Sbjct: 279 MVDPFHTLFGIAGLSLLGEEQIKPVS 304

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.2 bits (117), Expect = 1e-07
 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 35  GAYWGLTTLDILGKLDAVDEEDVISWILKCQD-ESGGFAGNIGHDPHVLYTLSAVQVLAL 93
            ++W L +L I+G+L  +D E + S+IL CQD E+GGFA   G      +TL  +  L+L
Sbjct: 235 YSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSL 294

Query: 94  FDKVDILDADKVSN 107
             +  I     V  
Sbjct: 295 LGEEQIKPVSPVFC 308

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.9 bits (111), Expect = 6e-07
 Identities = 13/80 (16%), Positives = 34/80 (42%)

Query: 146 DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWL 205
           D + ++K  +YI S  +    +            ++  +  + + G LH ++K+ +  ++
Sbjct: 10  DTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFI 69

Query: 206 CERQVKSGGLNGRPEKLPDV 225
              Q + GG++      P +
Sbjct: 70  KSCQHECGGVSASIGHDPHL 89

>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  237 bits (605), Expect = 1e-77
 Identities = 72/229 (31%), Positives = 112/229 (48%), Gaps = 8/229 (3%)

Query: 3   ELAADKHVKYII-SVEKKKDSFESVVMEHLRLNGAYWGLTTLDILG-KLDAVDEEDVISW 60
            L  +KH  Y+   + +  D++E   ++  R    YW L +L++L   +  +   DV  +
Sbjct: 52  VLQREKHFHYLKRGLRQLTDAYEC--LDASRPWLCYWILHSLELLDEPIPQIVATDVCQF 109

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF---DKVDILDADKVSNYIVGLQNEDG 117
           +  CQ   GGF G  G  PH+  T +AV  L +    +  DI++ +K+  Y+  L+  DG
Sbjct: 110 LELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDG 169

Query: 118 SFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHS 177
           SF   + GEVD R +Y A    S+   +     +   E+I  C+N +GG G  PG E+H 
Sbjct: 170 SFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHG 229

Query: 178 GQIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDV 225
           G  FC + AL I      ++   L  W+  RQ++  GG  GR  KL D 
Sbjct: 230 GYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDG 278

>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (261), Expect = 7e-27
 Identities = 42/207 (20%), Positives = 77/207 (37%), Gaps = 18/207 (8%)

Query: 37  YWGLTTLDILGKLDAVDEED---VISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLAL 93
           Y  +  L I+G  +A D  +   ++ ++   +   G F  ++G +  V     A  V +L
Sbjct: 134 YAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASL 193

Query: 94  FDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKA 153
            + +     +  + +I   QN +G   G    E    +++  +  L IL+R   +N+   
Sbjct: 194 TNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSL 253

Query: 154 VEYIVSC-KNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKD------------- 199
           ++++ S     +GGF             F   G L +     H   D             
Sbjct: 254 LQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQ 313

Query: 200 -LLGWWLCERQVKSGGLNGRPEKLPDV 225
            L  + L   Q  +GGL  +P K  D 
Sbjct: 314 ALQEYILMCCQCPAGGLLDKPGKSRDF 340

>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (251), Expect = 2e-25
 Identities = 45/203 (22%), Positives = 77/203 (37%), Gaps = 21/203 (10%)

Query: 7   DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQD 66
           +K ++Y+ S+++   SF   V   + +  AY   +   +   +     E    WI +CQ+
Sbjct: 155 EKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQN 214

Query: 67  ESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQ-NEDGSFSGDIWG 125
             GG  G  G + H  YT   +  L +  +   L+   +  ++   Q   +G F G    
Sbjct: 215 WEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNK 274

Query: 126 EVDTRFSYIAICCLSILQRLDK-------------INVDKAVEYIVSC-KNLDGGFGCTP 171
            VD  +S+     L +L R                 +     EYI+ C +   GG    P
Sbjct: 275 LVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKP 334

Query: 172 GGES---HSGQIFCCVGALAIAG 191
           G      H+     C+  L+IA 
Sbjct: 335 GKSRDFYHT---CYCLSGLSIAQ 354

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 346

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  222 bits (567), Expect = 2e-72
 Identities = 67/256 (26%), Positives = 105/256 (41%), Gaps = 37/256 (14%)

Query: 3   ELAADKHVKYII-SVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWI 61
           +   D+HV++    ++   + + S  +E  RL  A++ L+ LD+L  LD V+++D+I WI
Sbjct: 2   DFLRDRHVRFFQRCLQVLPERYSS--LETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWI 59

Query: 62  LKCQ--------------------------DESGGFAGNIGHDPHVLYTLSAVQVLA-LF 94
              Q                                  +     H+  T + +  L  L 
Sbjct: 60  YSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILG 119

Query: 95  DKVDILDADKVSNYIVGLQNEDGSFSGD-IWGEVDTRFSYIAICCLSILQRLDKINVDKA 153
           D +  +D +     +  LQ EDGSF       E D RF Y A C   +L     +++ KA
Sbjct: 120 DDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKA 179

Query: 154 VEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV----DKDLLGWWLCERQ 209
           + YI    + D G     G ESH G  FC + +L + G L  V    + + +  W   RQ
Sbjct: 180 ISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ 239

Query: 210 VKSGGLNGRPEKLPDV 225
               G +GRP K  D 
Sbjct: 240 --QNGYHGRPNKPVDT 253

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 346

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 99.3 bits (247), Expect = 3e-25
 Identities = 38/194 (19%), Positives = 72/194 (37%), Gaps = 5/194 (2%)

Query: 37  YWGLTTLDILG-KLDAVDEEDVISWILKCQDESGGFAGN-IGHDPHVLYTLSAVQVLALF 94
           Y GL+ L ILG  L  VD+E  ++ +   Q E G F     G +  + +   A  +  + 
Sbjct: 109 YTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYML 168

Query: 95  DKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAV 154
           +    +D  K  +YI    + D   +     E     ++  I  L ++ +L+++  +K +
Sbjct: 169 NNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKEL 228

Query: 155 EYIVS--CKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLL-GWWLCERQVK 211
             I          G+   P     +   F     L +     + + +    + L  +   
Sbjct: 229 NRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRL 288

Query: 212 SGGLNGRPEKLPDV 225
            GG    P+  PD 
Sbjct: 289 VGGFAKWPDSHPDA 302

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 346

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 98.5 bits (245), Expect = 5e-25
 Identities = 40/200 (20%), Positives = 79/200 (39%), Gaps = 14/200 (7%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVV---MEHLRLNGAYWGLTTLDILGKLDAVDEEDV 57
           +  +  +  +  + +++ +  SF +V       +R    Y       +L     +D +  
Sbjct: 122 LSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMR--FVYCASCICYMLNNWSGMDMKKA 179

Query: 58  ISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVG--LQNE 115
           IS+I +      G A   G + H   T   +  L L  K++ + ++K  N I    +  +
Sbjct: 180 ISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ 239

Query: 116 DGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN-LDGGFGCTPGGE 174
              + G     VDT +S+     L +L+     N +K   YI+S ++ L GGF   P   
Sbjct: 240 QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSH 299

Query: 175 S---HSGQIFCCVGALAIAG 191
               H+   +  +  L++  
Sbjct: 300 PDALHA---YFGICGLSLME 316

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 346

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.5 bits (110), Expect = 9e-07
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 7/76 (9%)

Query: 36  AYWGLTTLDILGKLDAVDEEDVISWILKCQD-ESGGFAGNIGHDP---HVLYTLSAVQVL 91
           ++W   TL +L      + E   ++IL  QD   GGFA      P   H  + +     L
Sbjct: 256 SFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICG---L 312

Query: 92  ALFDKVDILDADKVSN 107
           +L ++  I       N
Sbjct: 313 SLMEESGICKVHPALN 328

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 448

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (121), Expect = 4e-08
 Identities = 34/205 (16%), Positives = 68/205 (33%), Gaps = 49/205 (23%)

Query: 56  DVISWILKCQDESGGFA--------------------GNIGHDPHVLY-TLSAVQVLALF 94
           D ++ +L  ++  GGFA                    G+I  D   +  T + +Q L  F
Sbjct: 201 DAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYF 260

Query: 95  DK--------VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLD 146
            K               +   +    Q  DGS+ G  WG   T  ++  +   + + +  
Sbjct: 261 HKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGS-WGVCFTYGTWFGLEAFACMGQTY 319

Query: 147 KIN-----VDKAVEYIVSCKNLDGGF----------GCTPGGESHSGQIFCCVGALAIAG 191
           +       V +A ++++S +  DGG+                +S        +  L    
Sbjct: 320 RDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMAVR 379

Query: 192 ALHH--VDKDLLGWWLCERQVKSGG 214
                  ++ +    L E+Q+ +G 
Sbjct: 380 HPDIEAQERGVR--CLLEKQLPNGD 402

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 448

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (87), Expect = 8e-04
 Identities = 17/147 (11%), Positives = 45/147 (30%), Gaps = 16/147 (10%)

Query: 36  AYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALF- 94
            Y+     +             + +  + Q   G + G+         T   ++  A   
Sbjct: 258 KYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGS-WGVCFTYGTWFGLEAFACMG 316

Query: 95  ----DKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSY----------IAICCLS 140
               D     +  +  ++++  Q  DG +  D     + R+             A+  L 
Sbjct: 317 QTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLM 376

Query: 141 ILQRLDKINVDKAVEYIVSCKNLDGGF 167
            ++  D    ++ V  ++  +  +G +
Sbjct: 377 AVRHPDIEAQERGVRCLLEKQLPNGDW 403

>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 352

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

 Score = 36.3 bits (83), Expect = 0.002
 Identities = 21/124 (16%), Positives = 44/124 (35%), Gaps = 12/124 (9%)

Query: 55  EDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVS-NYIVGLQ 113
              + ++ + Q   G + G      ++  T + V  L            + + +++   Q
Sbjct: 191 RRAVEYLKREQKPDGSWFGR-WGVNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQ 249

Query: 114 NEDGSFSGDIWGEVDTRF----------SYIAICCLSILQRLDKINVDKAVEYIVSCKNL 163
           N DG +  D     D  +          +  A+  L    R +     + V+Y+V  +  
Sbjct: 250 NPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAESEAARRGVQYLVETQRP 309

Query: 164 DGGF 167
           DGG+
Sbjct: 310 DGGW 313

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	239
d3dssb1	325	Rab geranylgeranyltransferase, beta subunit {Rat (	100.0
d2h6fb1	401	Protein farnesyltransferase, beta-subunit {Human (	100.0
d1n4qb_	346	Protein farnesyltransferase, beta-subunit {Rat (Ra	100.0
d3dssb1	325	Rab geranylgeranyltransferase, beta subunit {Rat (	100.0
d2h6fb1	401	Protein farnesyltransferase, beta-subunit {Human (	100.0
d1n4qb_	346	Protein farnesyltransferase, beta-subunit {Rat (Ra	100.0
d2sqca1	352	Squalene-hopene cyclase {Alicyclobacillus acidocal	99.94
d1w6ka1	448	Lanosterol synthase {Human (Homo sapiens) [TaxId:	99.93
d2sqca1	352	Squalene-hopene cyclase {Alicyclobacillus acidocal	99.92
d1w6ka1	448	Lanosterol synthase {Human (Homo sapiens) [TaxId:	99.82
d2sqca2	271	Squalene-hopene cyclase {Alicyclobacillus acidocal	99.61
d2sqca2	271	Squalene-hopene cyclase {Alicyclobacillus acidocal	99.42
d1hzfa_	326	C4adg fragment of complement factor C4a {Human (Ho	98.99
d1r76a_	408	Polygalacturonic acid lyase (pectate lyase) {Azosp	98.92
d1r76a_	408	Polygalacturonic acid lyase (pectate lyase) {Azosp	98.88
d1c3da_	294	C3D, a C3 fragment and ligand for complement recep	98.84
d1gxma_	324	Polygalacturonic acid lyase (pectate lyase) {Cellv	98.79
d1c3da_	294	C3D, a C3 fragment and ligand for complement recep	98.52
d1w6ka2	279	Lanosterol synthase {Human (Homo sapiens) [TaxId:	98.49
d1gxma_	324	Polygalacturonic acid lyase (pectate lyase) {Cellv	98.42
d1hzfa_	326	C4adg fragment of complement factor C4a {Human (Ho	98.33
d1w6ka2	279	Lanosterol synthase {Human (Homo sapiens) [TaxId:	98.21

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=7e-59  Score=398.45  Aligned_cols=235  Identities=56%  Similarity=1.073  Sum_probs=224.0

Q ss_pred             CcccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhccCCCCCCCCCCCCCCch
Q 026402            2 GELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHV   81 (239)
Q Consensus         2 ~~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~   81 (239)
                      ++|+++||++||+++......+..+..++++++.+||++.+|++|+..++.+++++++||++||++||||+..+++.+|+
T Consensus        10 ~~l~~~~H~~y~~~~~~~~~~~~~~~~d~~r~~~~yw~l~sL~lLg~l~~~~~~~~i~~L~s~Q~~dGGf~g~~~~~~~l   89 (325)
T d3dssb1          10 DTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVSASIGHDPHL   89 (325)
T ss_dssp             CSCCHHHHHHHHHHTTSSSCGGGSGGGGGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTSCBCH
T ss_pred             hHHHHHHHHHHHHHhcccCCCccceehhhhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCCCCcCCCCCCcccH
Confidence            47899999999999877666777788889999999999999999998777789999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhcc
Q 026402           82 LYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCK  161 (239)
Q Consensus        82 ~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~Q  161 (239)
                      ..||+|+.+|.+++..+.++++++++||.++|++||||.+.++++.|+++||+|++++.+++..+.++++++++||++||
T Consensus        90 ~~T~~al~~L~l~~~~~~~dr~~i~~~L~s~Q~~DGsf~~~~~~e~D~r~ty~Al~~l~ll~~~~~~~~~~~~~~i~scQ  169 (325)
T d3dssb1          90 LYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCM  169 (325)
T ss_dssp             HHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHTTB
T ss_pred             HHHHHHHHHHHhhccccccCHHHHHHHHHHhhCcCCCCccCCCCCccHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhc
Confidence            99999999999999888899999999999999999999999999999999999999999999888889999999999999


Q ss_pred             CCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccCCccCCCCCCCCChhhhhhhhccCC
Q 026402          162 NLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVGLLLLVGSFKL  236 (239)
Q Consensus       162 ~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~~k~~D~c~s~~~~~~l~  236 (239)
                      ++||||+..|+.|+|+.+||||+++|.+++..+..+.+++++||.+||.++|||++||+|.+|+|||||++++|.
T Consensus       170 n~DGGfg~~p~~Esh~g~T~cavasL~ll~~l~~~~~~~l~~wL~~rQ~~~GGf~GR~~K~~D~cys~W~~~~l~  244 (325)
T d3dssb1         170 NFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLK  244 (325)
T ss_dssp             CTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHH
T ss_pred             CCcCCccccCCCCCCcchhHHHHHHHHHhcccccccHHHHHHHHHHhCCCCCCcCCCCCCCCchHHHHHHHHHHH
Confidence            999999999999999999999999999999988889999999999999999999999999999999999999874

>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-57  Score=397.52  Aligned_cols=231  Identities=31%  Similarity=0.535  Sum_probs=213.7

Q ss_pred             cccHHHHHHHHHHcccC-CCCccccccccchHHHHHHHHHHHHhhCCCC-CcCHHHHHHHHHhccCCCCCCCCCCCCCCc
Q 026402            3 ELAADKHVKYIISVEKK-KDSFESVVMEHLRLNGAYWGLTTLDILGKLD-AVDEEDVISWILKCQDESGGFAGNIGHDPH   80 (239)
Q Consensus         3 ~~~~~~~~~yl~~~q~~-dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~-~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~   80 (239)
                      +|++++|++|+++..+. ..+|  ...+.+++|.+||++.+|++|+... ...++++++||.+||+++|||++.++..+|
T Consensus        52 ~L~r~~H~~y~~~~L~~lp~~~--~~lD~~r~~l~yw~l~~L~LL~~~~~~~~~~~ii~~l~~~q~~~GGF~g~pg~~~h  129 (401)
T d2h6fb1          52 VLQREKHFHYLKRGLRQLTDAY--ECLDASRPWLCYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGPGQYPH  129 (401)
T ss_dssp             CCCHHHHHHHHHHHTTEECGGG--GGGTTCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHBCTTSSBBSSTTCCBC
T ss_pred             cccHHHHHHHHHHHHHhCCHHh--hccccccHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHcCCCCCcCCCCCCCcc
Confidence            58899999999987653 2233  3457899999999999999999753 346788999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhcCC---CCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHH
Q 026402           81 VLYTLSAVQVLALFDK---VDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYI  157 (239)
Q Consensus        81 ~~~T~~al~~L~~l~~---~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l  157 (239)
                      +..||+|+.+|.+++.   ++.+|++++++||.++|++||||...+++++|+++||||++++.+++.+++++.+++++||
T Consensus       130 la~Ty~Al~~L~ilg~~~~~~~idR~~i~~fL~slQ~pDGsF~~~~~ge~D~R~~Y~Av~i~~lL~~~~~~~~~~~~~~I  209 (401)
T d2h6fb1         130 LAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWI  209 (401)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCCCTTTTTTHHHHH
T ss_pred             hHHHHHHHHHHHHcCCccccchhhHHHHHHHHHHhcCCCCCccccccCCcccchhHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            9999999999999986   4678999999999999999999999999999999999999999999998888999999999


Q ss_pred             HhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhcccc-CCccCCCCCCCCChhhhhhhhccC
Q 026402          158 VSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVK-SGGLNGRPEKLPDVGLLLLVGSFK  235 (239)
Q Consensus       158 ~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~-~GGf~~~~~k~~D~c~s~~~~~~l  235 (239)
                      ++||+.||||+..|+.|+|+++|||||++|.++++.+..+++++++||.+||.+ +|||+|||||.+|+|||||++++|
T Consensus       210 ~scQ~~dGGfg~~pg~EaHgg~TfCalAaL~lL~~~~~~d~~~l~~WL~~RQ~~~eGGF~GR~nKlvD~CYSfW~ga~l  288 (401)
T d2h6fb1         210 ARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQGRCNKLVDGCYSFWQAGLL  288 (401)
T ss_dssp             HHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHTBCTTTCSBBSSTTSCBCTTHHHHTTTHH
T ss_pred             HHccCCCCCccCCCCCCcchhHHHHHHHHHHHhCCCcccCHHHHHHHHHHcCCCCCCccCCCCCCCcchHHHHHHHHHH
Confidence            999999999999999999999999999999999998889999999999999976 899999999999999999999986

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.8e-54  Score=369.35  Aligned_cols=231  Identities=29%  Similarity=0.470  Sum_probs=203.8

Q ss_pred             cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhccCCCC---------C---
Q 026402            3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESG---------G---   70 (239)
Q Consensus         3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~q~~dG---------g---   70 (239)
                      +|.+|||++|++++..... ..+...+.++++..||+|.+|++|+..+..+++++++||++||..++         |   
T Consensus         2 ~f~~~kH~~y~~~~l~~lp-~~~~~~D~~R~~~~Yw~l~sL~lL~~l~~~~~~~~i~~l~~~q~~~~~~~~~~~~~gf~g   80 (346)
T d1n4qb_           2 DFLRDRHVRFFQRCLQVLP-ERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRG   80 (346)
T ss_dssp             CCCHHHHHHHHHHHHHEEC-GGGGGGGGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTEECCCTTCTTGGGCEECS
T ss_pred             cccHHHHHHHHHHHHhcCC-HHHHHHHhhhHHHHHHHHHHHHHcCCCccccHHHHHHHHHHHhccccccccCccccCccC
Confidence            6899999999998765322 34455678999999999999999998766789999999999996432         2   


Q ss_pred             --------------CCCCCCCCCchhHHHHHHHHHHhcCC-CCCCCHHHHHHHHHhccCCCCCcccCC-CCCCCcchhHH
Q 026402           71 --------------FAGNIGHDPHVLYTLSAVQVLALFDK-VDILDADKVSNYIVGLQNEDGSFSGDI-WGEVDTRFSYI  134 (239)
Q Consensus        71 --------------f~~~~~~~~~~~~T~~al~~L~~l~~-~~~~~~~~~~~~l~~~Q~~dGgf~~~~-~~~~d~~~ty~  134 (239)
                                    ++..+++.+|+.+||+|+.+|.++++ ++.+|++++++||.++|++||||...+ ++++|+|+|||
T Consensus        81 s~~~~~~~~~~~~~~~~~~~~~~hl~~Ty~Al~~L~~lg~~~~~idr~~i~~~l~~lq~~DGsF~~~~~gge~D~R~tY~  160 (346)
T d1n4qb_          81 SSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYC  160 (346)
T ss_dssp             SSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCSTTSCHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHH
T ss_pred             cccccCCCCcccCCCCCCccchhHHHHHHHHHHHHHHhchHhhHhHHHHHHHHHHHhcCCCCCccccCCCCcchHHHHHH
Confidence                          33344567899999999999999964 678899999999999999999997654 56999999999


Q ss_pred             HHhHHHhhccCChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCC----CHHHHHHHHHhccc
Q 026402          135 AICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHV----DKDLLGWWLCERQV  210 (239)
Q Consensus       135 al~~l~~l~~~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~----~~~~~~~~L~~~Q~  210 (239)
                      |++++.+++.+++++.+++++||++||+.||||+..|+.|+|+++||||+++|+++++++..    +++++++||.+|| 
T Consensus       161 A~~i~~lL~~~~~~~~~~~~~~I~scq~~DGGfg~~p~~EsHgg~TfCavasL~ll~~~~~~~~~~~~~~l~~WL~~Rq-  239 (346)
T d1n4qb_         161 ASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ-  239 (346)
T ss_dssp             HHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB-
T ss_pred             HHHHHHHhCCCccccHHHHHHHHHHhcCcCCCccCCCCCCccHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHhcc-
Confidence            99999999998889999999999999999999999999999999999999999999985433    6789999999998 


Q ss_pred             cCCccCCCCCCCCChhhhhhhhccCC
Q 026402          211 KSGGLNGRPEKLPDVGLLLLVGSFKL  236 (239)
Q Consensus       211 ~~GGf~~~~~k~~D~c~s~~~~~~l~  236 (239)
                       +|||+|||||.+|+|||||++++|.
T Consensus       240 -~gGf~GR~nK~~D~CYs~W~~~~l~  264 (346)
T d1n4qb_         240 -QNGYHGRPNKPVDTCYSFWVGATLK  264 (346)
T ss_dssp             -SSSBCSSTTSCCCTTHHHHHHHHHH
T ss_pred             -cCCcCCCCCCccchHHHHHHHHHHH
Confidence             7999999999999999999999873

>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.6e-47  Score=326.28  Aligned_cols=233  Identities=21%  Similarity=0.318  Sum_probs=220.8

Q ss_pred             cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhccCCCCCCCCCCCCCCchh
Q 026402            3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVL   82 (239)
Q Consensus         3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~   82 (239)
                      +.++++.++||.++|+++|||.......+++..||+++.+|.+++....++++++++||+++|++||||...++.++++.
T Consensus        59 ~~~~~~~i~~L~s~Q~~dGGf~g~~~~~~~l~~T~~al~~L~l~~~~~~~dr~~i~~~L~s~Q~~DGsf~~~~~~e~D~r  138 (325)
T d3dssb1          59 RMNKEEILVFIKSCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTR  138 (325)
T ss_dssp             GSCHHHHHHHHHHTBCTTSCBBSSTTSCBCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHH
T ss_pred             hHHHHHHHHHHHHhcCCCCCcCCCCCCcccHHHHHHHHHHHHhhccccccCHHHHHHHHHHhhCcCCCCccCCCCCccHH
Confidence            57899999999999999999997777778999999999999999876667999999999999999999999888999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHhccC
Q 026402           83 YTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKN  162 (239)
Q Consensus        83 ~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~~Q~  162 (239)
                      .||+|+.++.+++..+.++++++++||.+||+.||||+..|+.|+|..+|||++++|.+++.++..+.+++++||.++|.
T Consensus       139 ~ty~Al~~l~ll~~~~~~~~~~~~~~i~scQn~DGGfg~~p~~Esh~g~T~cavasL~ll~~l~~~~~~~l~~wL~~rQ~  218 (325)
T d3dssb1         139 FSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQL  218 (325)
T ss_dssp             HHHHHHHHHHHHTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBC
T ss_pred             HHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCcCCccccCCCCCCcchhHHHHHHHHHhcccccccHHHHHHHHHHhCC
Confidence            99999999999998888899999999999999999999999999999999999999999999888899999999999999


Q ss_pred             CCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhcc-ccCCccCCCCCCCCChhhhhhhhccC
Q 026402          163 LDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQ-VKSGGLNGRPEKLPDVGLLLLVGSFK  235 (239)
Q Consensus       163 ~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q-~~~GGf~~~~~k~~D~c~s~~~~~~l  235 (239)
                      ++|||.++|++.+|+++|||++++|.+|+..+.+|.+++.+||+.|| .+.|||+..|++.||.+|||+++++|
T Consensus       219 ~~GGf~GR~~K~~D~cys~W~~~~l~~L~~~~~~d~~~l~~yil~~~q~~~GGf~~~p~~~pD~~HT~y~l~gL  292 (325)
T d3dssb1         219 PSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGL  292 (325)
T ss_dssp             TTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTTCCBCSSTTSCCBHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCCCchHHHHHHHHHHHHcCccccccHHHHHHHHHHHcCCCCCCcCCCCCCCCChHHHHHHHHHH
Confidence            99999999999999999999999999999888899999999999996 67899999999999999999999865

>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-45  Score=317.99  Aligned_cols=233  Identities=18%  Similarity=0.246  Sum_probs=216.4

Q ss_pred             cccHHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhccCCCCCCCCCCCCCC
Q 026402            3 ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIGHDP   79 (239)
Q Consensus         3 ~~~~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~   79 (239)
                      +.++++.++||.++|+++|||.....+.+.+..||+|+.+|.++|..   ..++++++++||.++|++||||...++.++
T Consensus       100 ~~~~~~ii~~l~~~q~~~GGF~g~pg~~~hla~Ty~Al~~L~ilg~~~~~~~idR~~i~~fL~slQ~pDGsF~~~~~ge~  179 (401)
T d2h6fb1         100 QIVATDVCQFLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFLMHVGGEV  179 (401)
T ss_dssp             HHHHHHHHHHHHHHBCTTSSBBSSTTCCBCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSCBBSSTTCCB
T ss_pred             HHHHHHHHHHHHHHcCCCCCcCCCCCCCcchHHHHHHHHHHHHcCCccccchhhHHHHHHHHHHhcCCCCCccccccCCc
Confidence            45678999999999999999998888889999999999999999974   346899999999999999999999999999


Q ss_pred             chhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHHHHhHHHhhccCChhcHHHHHHHHHh
Q 026402           80 HVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVS  159 (239)
Q Consensus        80 ~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~~~~~~~~~~~l~~  159 (239)
                      ++..||+|+.++.+++..+..+++++++||.+||+.||||++.|+.|++..+|||++++|.+++.+...+++++++||.+
T Consensus       180 D~R~~Y~Av~i~~lL~~~~~~~~~~~~~~I~scQ~~dGGfg~~pg~EaHgg~TfCalAaL~lL~~~~~~d~~~l~~WL~~  259 (401)
T d2h6fb1         180 DVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTS  259 (401)
T ss_dssp             SHHHHHHHHHHHHHTTCCCTTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCCCccCCCCCCcchhHHHHHHHHHHHhCCCcccCHHHHHHHHHH
Confidence            99999999999999998888889999999999999999999999999999999999999999999888899999999999


Q ss_pred             ccCC-CCCccCCCCCCCchhhHHHHHHHHHHhCCC-------------CCCCHHHHHHHHHhc-cccCCccCCCCCCCCC
Q 026402          160 CKNL-DGGFGCTPGGESHSGQIFCCVGALAIAGAL-------------HHVDKDLLGWWLCER-QVKSGGLNGRPEKLPD  224 (239)
Q Consensus       160 ~Q~~-dGGf~~~~~~~s~~~~T~~al~aL~~l~~~-------------~~~~~~~~~~~L~~~-Q~~~GGf~~~~~k~~D  224 (239)
                      +|.+ +|||.+++++.+|++|+||..++|.+|+..             ..+|.+++.+||+.| |++.|||+..|+|.+|
T Consensus       260 RQ~~~eGGF~GR~nKlvD~CYSfW~ga~l~lL~~~~~~~~~~~~~~~~~l~d~~~l~~yiL~~~Q~~~GGf~d~Pg~~pD  339 (401)
T d2h6fb1         260 RQMRFEGGFQGRCNKLVDGCYSFWQAGLLPLLHRALHAQGDPALSMSHWMFHQQALQEYILMCCQCPAGGLLDKPGKSRD  339 (401)
T ss_dssp             TBCTTTCSBBSSTTSCBCTTHHHHTTTHHHHHHHHHHHTTCTTCCSSCCSSCHHHHHHHHHHHSBCTTSCBCSSTTSCCC
T ss_pred             cCCCCCCccCCCCCCCcchHHHHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCC
Confidence            9976 899999999999999999999999999742             136899999999876 7899999999999999


Q ss_pred             hhhhhhhhccC
Q 026402          225 VGLLLLVGSFK  235 (239)
Q Consensus       225 ~c~s~~~~~~l  235 (239)
                      .+|||+++++|
T Consensus       340 ~yHT~y~L~gL  350 (401)
T d2h6fb1         340 FYHTCYCLSGL  350 (401)
T ss_dssp             HHHHHHHHHHH
T ss_pred             ccHHHHHHHHH
Confidence            99999999876

>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Protein farnesyltransferase, beta-subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=8.4e-43  Score=297.97  Aligned_cols=231  Identities=16%  Similarity=0.211  Sum_probs=206.3

Q ss_pred             cccHHHHHHHHHHcccCCCCcc--------------------------ccccccchHHHHHHHHHHHHhhCCC-CCcCHH
Q 026402            3 ELAADKHVKYIISVEKKKDSFE--------------------------SVVMEHLRLNGAYWGLTTLDILGKL-DAVDEE   55 (239)
Q Consensus         3 ~~~~~~~~~yl~~~q~~dg~~~--------------------------~~~~~~~~~~~~y~al~~l~ll~~~-~~~~~~   55 (239)
                      ..++++.++||.++|.+++++.                          ....+.+.+..||+|+.+|.+++.. +.++++
T Consensus        49 ~~~~~~~i~~l~~~q~~~~~~~~~~~~~gf~gs~~~~~~~~~~~~~~~~~~~~~~hl~~Ty~Al~~L~~lg~~~~~idr~  128 (346)
T d1n4qb_          49 VVNKDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKE  128 (346)
T ss_dssp             GSCHHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCSTTSCHH
T ss_pred             cccHHHHHHHHHHHhccccccccCccccCccCcccccCCCCcccCCCCCCccchhHHHHHHHHHHHHHHhchHhhHhHHH
Confidence            4568999999999996544321                          1122456888999999999999864 467899


Q ss_pred             HHHHHHHhccCCCCCCCCC-CCCCCchhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcchhHH
Q 026402           56 DVISWILKCQDESGGFAGN-IGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYI  134 (239)
Q Consensus        56 ~~i~~l~~~q~~dGgf~~~-~~~~~~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~  134 (239)
                      ++++||.++|++||||... .+.++|+..||+|+.++.+++..+.++++++++||.+||+.||||+..|+.|+|..+|||
T Consensus       129 ~i~~~l~~lq~~DGsF~~~~~gge~D~R~tY~A~~i~~lL~~~~~~~~~~~~~~I~scq~~DGGfg~~p~~EsHgg~TfC  208 (346)
T d1n4qb_         129 ACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFC  208 (346)
T ss_dssp             HHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHH
T ss_pred             HHHHHHHHhcCCCCCccccCCCCcchHHHHHHHHHHHHHhCCCccccHHHHHHHHHHhcCcCCCccCCCCCCccHHHHHH
Confidence            9999999999999999754 467999999999999999999888899999999999999999999999999999999999


Q ss_pred             HHhHHHhhccCCh----hcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhcc-
Q 026402          135 AICCLSILQRLDK----INVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQ-  209 (239)
Q Consensus       135 al~~l~~l~~~~~----~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q-  209 (239)
                      ++++|.+++.+..    .+++++++||.+.|  +|||.++|++.+|++|+||+.++|.+|+..+.+|.+++.+||+.|| 
T Consensus       209 avasL~ll~~~~~~~~~~~~~~l~~WL~~Rq--~gGf~GR~nK~~D~CYs~W~~~~l~iL~~~~~~d~~~l~~yil~~~q  286 (346)
T d1n4qb_         209 GIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQD  286 (346)
T ss_dssp             HHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB--SSSBCSSTTSCCCTTHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBC
T ss_pred             HHHHHHHhcccccccchhhHHHHHHHHHhcc--cCCcCCCCCCccchHHHHHHHHHHHHcccccccCHHHHHHHHHHHcC
Confidence            9999999998643    37889999999888  7999999999999999999999999999888899999999999996 


Q ss_pred             ccCCccCCCCCCCCChhhhhhhhccC
Q 026402          210 VKSGGLNGRPEKLPDVGLLLLVGSFK  235 (239)
Q Consensus       210 ~~~GGf~~~~~k~~D~c~s~~~~~~l  235 (239)
                      .+.|||+..|++.||.+|||.++++|
T Consensus       287 ~~~GGf~~~p~~~pD~~HT~~~l~gL  312 (346)
T d1n4qb_         287 RLVGGFAKWPDSHPDALHAYFGICGL  312 (346)
T ss_dssp             TTTCSBCSSTTSCCBHHHHHHHHHHH
T ss_pred             CCCCCcCCCCCCCCcHHHHHHHHHHH
Confidence            57899999999999999999999987

>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

Probab=99.94  E-value=4.5e-26  Score=196.38  Aligned_cols=211  Identities=18%  Similarity=0.162  Sum_probs=155.7

Q ss_pred             HHHHHHHHHHccc-------------CCCCcccccc--ccchHHHHHHHHHHHHhhCCCCC----cCHHHHHHHHHhccC
Q 026402            6 ADKHVKYIISVEK-------------KKDSFESVVM--EHLRLNGAYWGLTTLDILGKLDA----VDEEDVISWILKCQD   66 (239)
Q Consensus         6 ~~~~~~yl~~~q~-------------~dg~~~~~~~--~~~~~~~~y~al~~l~ll~~~~~----~~~~~~i~~l~~~q~   66 (239)
                      ..|+++||++.|.             ++|+|.....  ..++...|..++.+|..+...++    ..++++++||+++||
T Consensus        55 l~ka~~~L~~~Q~~~~gd~~~~~~~~~~Ggw~~s~~~~~~p~~d~Ta~~l~aL~~~~~~~~~~~~~ai~~av~~Lls~Qn  134 (352)
T d2sqca1          55 LVKAGEWLLDRQITVPGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQS  134 (352)
T ss_dssp             HHHHHHHHHHTCCCSCCGGGGTCTTSCCCCBCSSSSCTTCCBHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHhcCCCCCChhhhcCCCCCCccccccCCCCCCccccHHHHHHhhhhhcCCchhhHHHHHHHHHHHHHHhhc
Confidence            5689999999883             2466543221  23566667777777776655431    246789999999999


Q ss_pred             CCCCCCCCCC-------------------CCCchhHHHHHHHHHHhcCCC-CCCCHHHHHHHHHhccCCCCCcccCCCCC
Q 026402           67 ESGGFAGNIG-------------------HDPHVLYTLSAVQVLALFDKV-DILDADKVSNYIVGLQNEDGSFSGDIWGE  126 (239)
Q Consensus        67 ~dGgf~~~~~-------------------~~~~~~~T~~al~~L~~l~~~-~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~  126 (239)
                      +||||+.+..                   ..+....|..++.+|...+.. ....++++++||.+.|++||+|.+++. .
T Consensus       135 ~dGGw~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~T~~~l~al~~~g~~~~~~~I~kav~~L~~~Q~~dG~w~~~~~-~  213 (352)
T d2sqca1         135 SNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRWG-V  213 (352)
T ss_dssp             TTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHCCTTSCCCCSSB-S
T ss_pred             CCCCcccccccCccchhhccchhhhhhccCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhccCCCCCccccCC-C
Confidence            9999986421                   234566788888888766532 122479999999999999999987543 2


Q ss_pred             CCcchhHHHHhHHHhhcc-CChhcHHHHHHHHHhccCCCCCccCCC----------CCCCchhhHHHHHHHHHHhCCCCC
Q 026402          127 VDTRFSYIAICCLSILQR-LDKINVDKAVEYIVSCKNLDGGFGCTP----------GGESHSGQIFCCVGALAIAGALHH  195 (239)
Q Consensus       127 ~d~~~ty~al~~l~~l~~-~~~~~~~~~~~~l~~~Q~~dGGf~~~~----------~~~s~~~~T~~al~aL~~l~~~~~  195 (239)
                      ..+..|+.++.+|..++. .....++++++||+++|++||||+..+          ...+++..|.+++.+|...+..+.
T Consensus       214 ~~~y~t~~~l~aL~~~g~~~~~~~v~ka~~~L~~~Q~~dGgWg~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~a~~~~~  293 (352)
T d2sqca1         214 NYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAES  293 (352)
T ss_dssp             SHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHTTCSSS
T ss_pred             CcchHHHHHHHHHHhcccccchHHHHHHHHHHHhccCCCCCcccCcccccCcccCCCCCCcHHHHHHHHHHHHhcCCCCc
Confidence            334445566667777765 234568999999999999999997542          345788999999999988876555


Q ss_pred             CCHHHHHHHHHhccccCCccCC
Q 026402          196 VDKDLLGWWLCERQVKSGGLNG  217 (239)
Q Consensus       196 ~~~~~~~~~L~~~Q~~~GGf~~  217 (239)
                      ..++++++||+++|+++|+|.-
T Consensus       294 ~~i~ra~~~L~~~Q~~dG~w~~  315 (352)
T d2sqca1         294 EAARRGVQYLVETQRPDGGWDE  315 (352)
T ss_dssp             HHHHHHHHHHHHHCCTTSCCCC
T ss_pred             HHHHHHHHHHHHhcCCCCCCCC
Confidence            5689999999999999999984

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4e-25  Score=195.18  Aligned_cols=221  Identities=16%  Similarity=0.151  Sum_probs=162.7

Q ss_pred             HHHHHHHHHHcccCC--------------CCcccccc--ccchHHHHHHHHHHHHhhCCC-----CC---cCHHHHHHHH
Q 026402            6 ADKHVKYIISVEKKK--------------DSFESVVM--EHLRLNGAYWGLTTLDILGKL-----DA---VDEEDVISWI   61 (239)
Q Consensus         6 ~~~~~~yl~~~q~~d--------------g~~~~~~~--~~~~~~~~y~al~~l~ll~~~-----~~---~~~~~~i~~l   61 (239)
                      ++|+.+||+..|..+              |||.+...  ..++...|.-++.+|.++...     ..   ..+.++++||
T Consensus       127 l~kA~~wL~~~Q~~~~~gd~~~~~~~~~~GGW~f~~~n~~~Pd~DdTA~~l~al~~~~~~~~~~~~~~~~~~i~~av~wL  206 (448)
T d1w6ka1         127 LQKAHEFLRLSQVPDNPPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVL  206 (448)
T ss_dssp             HHHHHHHHHHHSCCCCCTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccCcCCCcchhhcCCCCCCceeCCcCCCCCCCCccHHHHHHHHHHHhccCccccccccHHHHHHHHHHH
Confidence            568899999988532              45553322  246777788888887765421     11   1366799999


Q ss_pred             HhccCCCCCCCCCCC---------------------CCCchhHHHHHHHHHHhcCCC-CC-------CCHHHHHHHHHhc
Q 026402           62 LKCQDESGGFAGNIG---------------------HDPHVLYTLSAVQVLALFDKV-DI-------LDADKVSNYIVGL  112 (239)
Q Consensus        62 ~~~q~~dGgf~~~~~---------------------~~~~~~~T~~al~~L~~l~~~-~~-------~~~~~~~~~l~~~  112 (239)
                      +++||+||||+.+..                     +.+.+..|..++.+|..+... ..       ..++++++||.+.
T Consensus       207 l~mQn~dGGw~afd~~~~~~~l~~~~~~~~~~~~~~D~s~~d~T~~~l~aL~~~~~~~p~~r~~~~~~~i~ral~yL~~~  286 (448)
T d1w6ka1         207 LNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQ  286 (448)
T ss_dssp             HTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCCCeeeccCCCChhhhhcccchhhhhccccCCCcchHHHHHHHHHHHHhhhCCccccccchHHHHHHHHHHHcc
Confidence            999999999996632                     245667899999888876421 11       1268899999999


Q ss_pred             cCCCCCcccCCCCCCCcchhHHHHhHHHhhccCC-----hhcHHHHHHHHHhccCCCCCccCC----------CCCCCch
Q 026402          113 QNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLD-----KINVDKAVEYIVSCKNLDGGFGCT----------PGGESHS  177 (239)
Q Consensus       113 Q~~dGgf~~~~~~~~d~~~ty~al~~l~~l~~~~-----~~~~~~~~~~l~~~Q~~dGGf~~~----------~~~~s~~  177 (239)
                      |++||||.++++ ...+..|+.++.+|...+...     ...++|+++||+++|++||||++.          ++..|++
T Consensus       287 Q~~DGsW~g~wg-~~~~ygT~~al~aL~~~G~~~~~~~~~~~v~ka~~wLls~Q~~DGGWge~~~s~~~~~~~~~~~s~~  365 (448)
T d1w6ka1         287 QRADGSWEGSWG-VCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQI  365 (448)
T ss_dssp             SCTTSCCCCSSB-SSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCH
T ss_pred             CCCCCcccccCC-CcccHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHhccCCCCCccCCCccccCcccCCCCCCcH
Confidence            999999988653 334445666777777766421     246899999999999999999764          3567899


Q ss_pred             hhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccCCccCCCC--CCCCChhh
Q 026402          178 GQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRP--EKLPDVGL  227 (239)
Q Consensus       178 ~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~--~k~~D~c~  227 (239)
                      ..|.|||.+|...+..+...++++++||+++|+++|+|.-..  +-++-.||
T Consensus       366 ~~TAwAl~aL~~ag~~~~~~v~rgv~~L~~~Q~~~G~W~~~~~~g~f~~~~~  417 (448)
T d1w6ka1         366 HNTCWAMMGLMAVRHPDIEAQERGVRCLLEKQLPNGDWPQENIAGVFNKSCA  417 (448)
T ss_dssp             HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCTTSCCCCCSCCEEETTTEE
T ss_pred             HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHccCCCCCCCCCceeeeecccce
Confidence            999999999988886555668999999999999999997543  23555554

>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

Probab=99.92  E-value=4.9e-24  Score=183.50  Aligned_cols=227  Identities=19%  Similarity=0.134  Sum_probs=161.0

Q ss_pred             HHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCC-CcCHHHHHHHHHhccC-------------CCCCC
Q 026402            6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD-AVDEEDVISWILKCQD-------------ESGGF   71 (239)
Q Consensus         6 ~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~-~~~~~~~i~~l~~~q~-------------~dGgf   71 (239)
                      ++|+++||++.|++||+|....  .+.+|.|-+++.+|.--|..+ .....++++||+++|.             +.|||
T Consensus         8 i~rav~~L~~~q~~dG~w~~~~--~s~vwdTala~~Al~eaG~~~~~~~l~ka~~~L~~~Q~~~~gd~~~~~~~~~~Ggw   85 (352)
T d2sqca1           8 LDRAVEYLLSCQKDEGYWWGPL--ISPVWDTGLAVLALRAAGLPADHDRLVKAGEWLLDRQITVPGDWAVKRPNLKPGGF   85 (352)
T ss_dssp             HHHHHHHHHHHCCTTSCCCCCE--CCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHTCCCSCCGGGGTCTTSCCCCB
T ss_pred             HHHHHHHHHHhcCCCCceeCCC--CCcHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCCCCChhhhcCCCCCCcc
Confidence            5789999999999999996322  245778888888877677543 2257889999999883             34777


Q ss_pred             CCCC--CCCCchhHHHHHHHHHHhcCCCCC----CCHHHHHHHHHhccCCCCCcccC-CC---------------CCCCc
Q 026402           72 AGNI--GHDPHVLYTLSAVQVLALFDKVDI----LDADKVSNYIVGLQNEDGSFSGD-IW---------------GEVDT  129 (239)
Q Consensus        72 ~~~~--~~~~~~~~T~~al~~L~~l~~~~~----~~~~~~~~~l~~~Q~~dGgf~~~-~~---------------~~~d~  129 (239)
                      +...  ...++...|..++.+|..+...+.    ..++++++||.++|++||||... +.               ...|.
T Consensus        86 ~~s~~~~~~p~~d~Ta~~l~aL~~~~~~~~~~~~~ai~~av~~Lls~Qn~dGGw~~~~~~~~~~~~~~~~~~~~~~~~d~  165 (352)
T d2sqca1          86 AFQFDNVYYPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDP  165 (352)
T ss_dssp             CSSSSCTTCCBHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCC
T ss_pred             ccccCCCCCCccccHHHHHHhhhhhcCCchhhHHHHHHHHHHHHHHhhcCCCCcccccccCccchhhccchhhhhhccCC
Confidence            6543  346788888888888776643221    12578999999999999999732 10               00122


Q ss_pred             ch---hHHHHhHHHhhccC-ChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCC-CCCCHHHHHHH
Q 026402          130 RF---SYIAICCLSILQRL-DKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGAL-HHVDKDLLGWW  204 (239)
Q Consensus       130 ~~---ty~al~~l~~l~~~-~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~-~~~~~~~~~~~  204 (239)
                      ..   |..++.++...+.. ....++++++||.++|++||+|..+.+ .++.+.|+.++.+|..++.. +...++++++|
T Consensus       166 ~~~~~T~~~l~al~~~g~~~~~~~I~kav~~L~~~Q~~dG~w~~~~~-~~~~y~t~~~l~aL~~~g~~~~~~~v~ka~~~  244 (352)
T d2sqca1         166 PSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRWG-VNYLYGTGAVVSALKAVGIDTREPYIQKALDW  244 (352)
T ss_dssp             CBHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHCCTTSCCCCSSB-SSHHHHHHHHHHHHHHTTCCTTSHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhccCCCCCccccCC-CCcchHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            22   33333333333321 245789999999999999999977544 46788899999999998863 23447899999


Q ss_pred             HHhccccCCccCCC----------CCCCCChhhhhhhhccC
Q 026402          205 LCERQVKSGGLNGR----------PEKLPDVGLLLLVGSFK  235 (239)
Q Consensus       205 L~~~Q~~~GGf~~~----------~~k~~D~c~s~~~~~~l  235 (239)
                      |+++|+++|||+..          +....++..+-|++-+|
T Consensus       245 L~~~Q~~dGgWg~~~~~~~~~~~~~~~~s~~~~Ta~al~aL  285 (352)
T d2sqca1         245 VEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMAL  285 (352)
T ss_dssp             HHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHH
T ss_pred             HHhccCCCCCcccCcccccCcccCCCCCCcHHHHHHHHHHH
Confidence            99999999999743          23345666677777665

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.9e-19  Score=156.48  Aligned_cols=228  Identities=12%  Similarity=0.098  Sum_probs=161.7

Q ss_pred             HHHHHHHHHcccCCCCccccc---cccchHHHHHHHHHHHHhhCCC--CC--cCHHHHHHHHHhccCCC-----------
Q 026402            7 DKHVKYIISVEKKKDSFESVV---MEHLRLNGAYWGLTTLDILGKL--DA--VDEEDVISWILKCQDES-----------   68 (239)
Q Consensus         7 ~~~~~yl~~~q~~dg~~~~~~---~~~~~~~~~y~al~~l~ll~~~--~~--~~~~~~i~~l~~~q~~d-----------   68 (239)
                      .+.+.|+..+|.+||.|....   ..-+.+|.|-+++.+|.-.|..  ++  ...+++.+||+..|..+           
T Consensus        73 ~~~~~~~~~~~~edg~w~~~~~~~~~~S~vWDTal~~~AL~~ag~~~~~~~~~~l~kA~~wL~~~Q~~~~~gd~~~~~~~  152 (448)
T d1w6ka1          73 LNGMTFYVGLQAEDGHWTGDYGQGTNGSQIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNPPDYQKYYRQ  152 (448)
T ss_dssp             HHHHHHHHTTBCTTSCBCCCCCCSSSCCHHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCCCTTGGGGTCC
T ss_pred             HhhhhHhhccccCCCchhHhhcCCCCCCChHHHHHHHHHHHHhCCCCCccchHHHHHHHHHHHhhccCcCCCcchhhcCC
Confidence            345668888999999985321   1236789999999999777642  11  24778999999988532           


Q ss_pred             ---CCCCCCC--CCCCchhHHHHHHHHHHhcCC-----CCCCC---HHHHHHHHHhccCCCCCcccCC------------
Q 026402           69 ---GGFAGNI--GHDPHVLYTLSAVQVLALFDK-----VDILD---ADKVSNYIVGLQNEDGSFSGDI------------  123 (239)
Q Consensus        69 ---Ggf~~~~--~~~~~~~~T~~al~~L~~l~~-----~~~~~---~~~~~~~l~~~Q~~dGgf~~~~------------  123 (239)
                         |||+...  ...|+...|..++.+|..+..     ...++   +.++++||.++|++||||..-.            
T Consensus       153 ~~~GGW~f~~~n~~~Pd~DdTA~~l~al~~~~~~~~~~~~~~~~~~i~~av~wLl~mQn~dGGw~afd~~~~~~~l~~~~  232 (448)
T d1w6ka1         153 MRKGGFSFSTLDCGWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLN  232 (448)
T ss_dssp             CCTTCCBSSCTTTCCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGC
T ss_pred             CCCCceeCCcCCCCCCCCccHHHHHHHHHHHhccCccccccccHHHHHHHHHHHHHhcCCCCCeeeccCCCChhhhhccc
Confidence               6776543  356888899999988876532     11222   5679999999999999997320            


Q ss_pred             ------CCCCCcc---hhHHHHhHHHhhccCC--------hhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHH
Q 026402          124 ------WGEVDTR---FSYIAICCLSILQRLD--------KINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGA  186 (239)
Q Consensus       124 ------~~~~d~~---~ty~al~~l~~l~~~~--------~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~a  186 (239)
                            +...|..   .|..++.+|..++...        ...++++++||.+.|++||+|....+. ...+.|.+++.+
T Consensus       233 ~~~~~~~~~~D~s~~d~T~~~l~aL~~~~~~~p~~r~~~~~~~i~ral~yL~~~Q~~DGsW~g~wg~-~~~ygT~~al~a  311 (448)
T d1w6ka1         233 PSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGV-CFTYGTWFGLEA  311 (448)
T ss_dssp             CCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCSSBS-SHHHHHHHHHHH
T ss_pred             chhhhhccccCCCcchHHHHHHHHHHHHhhhCCccccccchHHHHHHHHHHHccCCCCCcccccCCC-cccHHHHHHHHH
Confidence                  0112322   3555555555554311        235789999999999999999876543 577889999999


Q ss_pred             HHHhCCCCC-----CCHHHHHHHHHhccccCCccCC----------CCCCCCChhhhhhhhccC
Q 026402          187 LAIAGALHH-----VDKDLLGWWLCERQVKSGGLNG----------RPEKLPDVGLLLLVGSFK  235 (239)
Q Consensus       187 L~~l~~~~~-----~~~~~~~~~L~~~Q~~~GGf~~----------~~~k~~D~c~s~~~~~~l  235 (239)
                      |..++....     ..++++++||+++|+++|||+.          .++..+++--|-|.+-+|
T Consensus       312 L~~~G~~~~~~~~~~~v~ka~~wLls~Q~~DGGWge~~~s~~~~~~~~~~~s~~~~TAwAl~aL  375 (448)
T d1w6ka1         312 FACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGL  375 (448)
T ss_dssp             HHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCHHHHHHHHHHH
T ss_pred             HHHhCcCcccccccHHHHHHHHHHHhccCCCCCccCCCccccCcccCCCCCCcHHHHHHHHHHH
Confidence            999986321     2378999999999999999974          345667777778877655

>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

Probab=99.61  E-value=3.7e-15  Score=122.95  Aligned_cols=202  Identities=12%  Similarity=0.038  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCC-CcCHHHHHHHHHhccCCCC-------------CC
Q 026402            6 ADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLD-AVDEEDVISWILKCQDESG-------------GF   71 (239)
Q Consensus         6 ~~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~-~~~~~~~i~~l~~~q~~dG-------------gf   71 (239)
                      +++.++||.+.|++||||.....+++++..|.-++.+|.++|... ....+++.+||++.....+             -|
T Consensus        25 ~~~~~~~l~~~Q~~dGgW~~~~~~~~~~~~T~~~~~AL~~~g~~~~~~~~~ra~~~i~~~GG~~~~~~~~k~~LA~~G~~  104 (271)
T d2sqca2          25 MEKIRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRDEEPMQKALRFIQSQGGIESSRVFTRMWLALVGEY  104 (271)
T ss_dssp             HHHHHHHHHHHSCTTSCCCSSTTCCCCHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHccCCCCCccCCCCCCCcHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcCCcccCchHHHHHHHhcCCC
Confidence            568999999999999999877777899999999999999999653 3368899999998843221             11


Q ss_pred             CC--CCCCC--------------C----chhHHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCCCCcccCCCCCCCcch
Q 026402           72 AG--NIGHD--------------P----HVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRF  131 (239)
Q Consensus        72 ~~--~~~~~--------------~----~~~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~  131 (239)
                      .+  .+..+              .    +...++..+..+.........+....+++|...|.+++.|...+.    ..+
T Consensus       105 ~w~~v~~iP~E~~llP~~~p~~p~~~~~~~R~v~~p~~~l~~~~~~~~~~~~~~l~eL~~~~~~~~~~~~~~~----~~~  180 (271)
T d2sqca2         105 PWEKVPMVPPEIMFLGKRMPLNIYEFGSWARATVVALSIVMSRQPVFPLPERARVPELYETDVPPRRRGAKGG----GGW  180 (271)
T ss_dssp             CGGGSCCCCGGGGGSCTTSTTCGGGSCHHHHHHHHHHHHHHHHCCCCCCCGGGCCGGGGCCSSCCCCCCCTTC----CCH
T ss_pred             CccccCCCCHHHHcCCCccccCchhhheehhhhhhhHHHhhccCccCCCchhhHHHHHhcCCCcccccccccc----ccH
Confidence            11  11111              0    112223333333332323333445567888888889988876543    233


Q ss_pred             hHHHH-hHHHhhcc-----CChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 026402          132 SYIAI-CCLSILQR-----LDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWL  205 (239)
Q Consensus       132 ty~al-~~l~~l~~-----~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L  205 (239)
                      .|-++ .++..+..     +....++++++||++.|++||||+..      ...|++++.+|..+|..+.+.+++++++|
T Consensus       181 ~~~~~~~~l~~~e~l~~~~lr~~a~~~a~~wl~~~q~~dGgwG~i------~p~~~~~l~aL~~~G~~~~p~v~r~l~~l  254 (271)
T d2sqca2         181 IFDALDRALHGYQKLSVHPFRRAAEIRALDWLLERQAGDGSWGGI------QPPWFYALIALKILDMTQHPAFIKGWEGL  254 (271)
T ss_dssp             HHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHCCTTSSSTTS------HHHHHHHHHHHHHTTCTTSHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHccCCCCcccc------CHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence            33222 33333322     12456789999999999999999742      12478899999999976666689999999


Q ss_pred             Hh--ccccCCccCC
Q 026402          206 CE--RQVKSGGLNG  217 (239)
Q Consensus       206 ~~--~Q~~~GGf~~  217 (239)
                      .+  .|.++|++.-
T Consensus       255 ~~~~~~~~dG~~~i  268 (271)
T d2sqca2         255 ELYGVELDYGGWMF  268 (271)
T ss_dssp             GGGEEECTTSCEEE
T ss_pred             HHheeEcCCCceec
Confidence            65  4778998753

>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

Probab=99.42  E-value=5.8e-13  Score=109.57  Aligned_cols=182  Identities=19%  Similarity=0.136  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHhhCCCCCcCHHHHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCC-CCCCHHHHHHHHHh
Q 026402           33 LNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKV-DILDADKVSNYIVG  111 (239)
Q Consensus        33 ~~~~y~al~~l~ll~~~~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~-~~~~~~~~~~~l~~  111 (239)
                      +..+.-.+..+.++|..+....+++++||++.|++||||+..++..+++..|..++.+|.+++.. +.....++.+||.+
T Consensus         4 ~~~~a~~i~~~~~~g~~~~~~~~~~~~~l~~~Q~~dGgW~~~~~~~~~~~~T~~~~~AL~~~g~~~~~~~~~ra~~~i~~   83 (271)
T d2sqca2           4 VTMEAEYVLLCHILDRVDRDRMEKIRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMSRDEEPMQKALRFIQS   83 (271)
T ss_dssp             THHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHSCTTSCCCSSTTCCCCHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCCCccCCCCCCCcHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence            34466778999999976655688999999999999999999998899999999999999988742 22237899999999


Q ss_pred             ccCCCCC---------------cccCCC----------C-CCCc-------chhHHHHhHHHhhccCChhcHHHHHHHHH
Q 026402          112 LQNEDGS---------------FSGDIW----------G-EVDT-------RFSYIAICCLSILQRLDKINVDKAVEYIV  158 (239)
Q Consensus       112 ~Q~~dGg---------------f~~~~~----------~-~~d~-------~~ty~al~~l~~l~~~~~~~~~~~~~~l~  158 (239)
                      ..-..+.               |.+.+.          . ..+.       +.++..++.+....-..+......+++|.
T Consensus        84 ~GG~~~~~~~~k~~LA~~G~~~w~~v~~iP~E~~llP~~~p~~p~~~~~~~R~v~~p~~~l~~~~~~~~~~~~~~l~eL~  163 (271)
T d2sqca2          84 QGGIESSRVFTRMWLALVGEYPWEKVPMVPPEIMFLGKRMPLNIYEFGSWARATVVALSIVMSRQPVFPLPERARVPELY  163 (271)
T ss_dssp             TTCGGGSCHHHHHHHHHTTSSCGGGSCCCCGGGGGSCTTSTTCGGGSCHHHHHHHHHHHHHHHHCCCCCCCGGGCCGGGG
T ss_pred             cCCcccCchHHHHHHHhcCCCCccccCCCCHHHHcCCCccccCchhhheehhhhhhhHHHhhccCccCCCchhhHHHHHh
Confidence            8433221               111100          0 0111       11111111111111111223344678888


Q ss_pred             hccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCCC--C---CCHHHHHHHHHhccccCCccCC
Q 026402          159 SCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALH--H---VDKDLLGWWLCERQVKSGGLNG  217 (239)
Q Consensus       159 ~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~~--~---~~~~~~~~~L~~~Q~~~GGf~~  217 (239)
                      ..|.+++.|...... +....+..  ..|..+....  +   ..++++++||+++|+++|||++
T Consensus       164 ~~~~~~~~~~~~~~~-~~~~~~~~--~~l~~~e~l~~~~lr~~a~~~a~~wl~~~q~~dGgwG~  224 (271)
T d2sqca2         164 ETDVPPRRRGAKGGG-GWIFDALD--RALHGYQKLSVHPFRRAAEIRALDWLLERQAGDGSWGG  224 (271)
T ss_dssp             CCSSCCCCCCCTTCC-CHHHHHHH--HHHHHHHHSSCCTTHHHHHHHHHHHHHHHCCTTSSSTT
T ss_pred             cCCCccccccccccc-cHHHHHHH--HHHHHHHhcCCCchhhHHHHHHHHHHHHHccCCCCccc
Confidence            888888887654433 22222222  2233332222  1   2367899999999999999985

>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Complement components
domain: C4adg fragment of complement factor C4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=5e-09  Score=87.38  Aligned_cols=198  Identities=14%  Similarity=0.106  Sum_probs=115.9

Q ss_pred             HHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCC---CCcCHHHHHHHHHhccCCCCCCCCCCC-------
Q 026402            7 DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKL---DAVDEEDVISWILKCQDESGGFAGNIG-------   76 (239)
Q Consensus         7 ~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~---~~~~~~~~i~~l~~~q~~dGgf~~~~~-------   76 (239)
                      +++++-|.+.|++||||..|.+++.+.|.|-+++.+|..+...   ++..+.+.+.|+++.|..+|+|.....       
T Consensus        55 ~~g~~rl~~~Q~~dGgf~~w~~~~~~~wlTayv~~~L~~A~~~g~~~~~~~~~~~~~~l~~q~~~g~~~~~~~~~~~~~~  134 (326)
T d1hzfa_          55 QKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQ  134 (326)
T ss_dssp             HHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGGG
T ss_pred             HHHHHHHHHhcCCCCCcccCCCCCCchHHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHhhhcccccccccccCHHHh
Confidence            4555567788999999999988888999999999999887653   233567788999999999999875432       


Q ss_pred             -----CCCchhHHHHHHHHHHhcCCCC--CC----------CHHHHHHHHHhccCCCCCcccCCCCCCCcchhHH-HHhH
Q 026402           77 -----HDPHVLYTLSAVQVLALFDKVD--IL----------DADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYI-AICC  138 (239)
Q Consensus        77 -----~~~~~~~T~~al~~L~~l~~~~--~~----------~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~-al~~  138 (239)
                           ....+..|.+++.+|...+...  ..          .+.++++||.+....+          .+..++-. +..+
T Consensus       135 ~~~~~~~~~~~~tAyvl~aL~~~~~~~~~~~~~~~~~~~~~~i~kA~~~l~~~~~~~----------~~~~y~~a~~a~a  204 (326)
T d1hzfa_         135 GGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAG----------LLGAHAAAITAYA  204 (326)
T ss_dssp             GGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHT----------CCCHHHHHHHHHH
T ss_pred             ccccccccchhHHHHHHHHHHHcccccccchhhhhHhhHHHHHHHHHHHHHHHhhcc----------cCCHHHHHHHHHH
Confidence                 1223345566666665543211  11          1466788887765432          01111111 2222


Q ss_pred             HHhhccCChhcHHHHHHHHHhccCC-CCC--ccCCCC----------------------CCCchhhHHHHHHHHHHhCCC
Q 026402          139 LSILQRLDKINVDKAVEYIVSCKNL-DGG--FGCTPG----------------------GESHSGQIFCCVGALAIAGAL  193 (239)
Q Consensus       139 l~~l~~~~~~~~~~~~~~l~~~Q~~-dGG--f~~~~~----------------------~~s~~~~T~~al~aL~~l~~~  193 (239)
                      |.+.+. .......+..-+.+.... +++  |....+                      ..++...|.++|.++..... 
T Consensus       205 l~~~~~-~~~~~~~~~~~l~~~a~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~iettayaLla~~~~~~-  282 (326)
T d1hzfa_         205 LTLTKA-PADLRGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHEG-  282 (326)
T ss_dssp             HHHTTC-CHHHHHHHHHHHHTTCEECSSCEECC------------------------CCCHHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHcCC-chHHHHHHHHHHHHHHhhccccceecccccccccccccccccccCCCCCcccchHHHHHHHHHHHHHHhcCC-
Confidence            333333 111222233333333222 222  211111                      11245677788766544432 


Q ss_pred             CCCCHHHHHHHHHhccccCCccC
Q 026402          194 HHVDKDLLGWWLCERQVKSGGLN  216 (239)
Q Consensus       194 ~~~~~~~~~~~L~~~Q~~~GGf~  216 (239)
                      +....+++++||.+.|+..|||.
T Consensus       283 ~~~~~~~~~~WL~~qr~~~Ggw~  305 (326)
T d1hzfa_         283 KAEMADQASAWLTRQGSFQGGFR  305 (326)
T ss_dssp             SSHHHHHHHHHHHHHTTSTTCSC
T ss_pred             CchhHHHHHHHHHHhccCCCCCc
Confidence            33446889999999999999995

>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Azospirillum irakense [TaxId: 34011]

Probab=98.92  E-value=3.6e-09  Score=90.35  Aligned_cols=164  Identities=16%  Similarity=0.051  Sum_probs=92.9

Q ss_pred             CHHHHHHHHHhccCCCCCCCCCCC--------------------------------------CCCchhHHHHHHHHHHhc
Q 026402           53 DEEDVISWILKCQDESGGFAGNIG--------------------------------------HDPHVLYTLSAVQVLALF   94 (239)
Q Consensus        53 ~~~~~i~~l~~~q~~dGgf~~~~~--------------------------------------~~~~~~~T~~al~~L~~l   94 (239)
                      .-+++.+.|+..|+++|||+....                                      ...+-..|..+|..|..+
T Consensus        82 eA~~iAd~lL~~Q~p~GGWpKn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiDN~aTt~el~~La~~  161 (408)
T d1r76a_          82 AARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQV  161 (408)
T ss_dssp             HHHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCCCCccccccccccchhhhhhhccccccccchhhhhhhhhhcccCCCcCcchHHHHHHHHHHH
Confidence            457789999999999999964210                                      011123477777777655


Q ss_pred             CCC--CCC------CHHHHHHHHHhccCCCCCcccCC-CCCCCc-------chhHHHHhHHHhhcc-------CC-----
Q 026402           95 DKV--DIL------DADKVSNYIVGLQNEDGSFSGDI-WGEVDT-------RFSYIAICCLSILQR-------LD-----  146 (239)
Q Consensus        95 ~~~--~~~------~~~~~~~~l~~~Q~~dGgf~~~~-~~~~d~-------~~ty~al~~l~~l~~-------~~-----  146 (239)
                      ...  +.-      .++++++||.+.|++||||.... ......       ..+--++-+|..+..       ++     
T Consensus       162 ~~~~~~~~~~~y~~a~~~~~~~ll~~Q~~~Ggwpqf~p~~~~Y~~~ItfND~~m~~~l~~l~~~~~~~~~~~~~~~~~r~  241 (408)
T d1r76a_         162 VSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIRT  241 (408)
T ss_dssp             HHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHHH
T ss_pred             HHHcCcccchhHHHHHHHHHHHHHHhhCCCCCccccCCCCcccccccccCchHHHHHHHHHHHHHHhccccccCCHHHHH
Confidence            211  111      25789999999999999997642 111110       011113333322221       11     


Q ss_pred             --hhcHHHHHHHHHhccCCCCCccCCCCC---------------C-Cc--hhhHHHHHHHHHHhCCCCCC-----CHHHH
Q 026402          147 --KINVDKAVEYIVSCKNLDGGFGCTPGG---------------E-SH--SGQIFCCVGALAIAGALHHV-----DKDLL  201 (239)
Q Consensus       147 --~~~~~~~~~~l~~~Q~~dGGf~~~~~~---------------~-s~--~~~T~~al~aL~~l~~~~~~-----~~~~~  201 (239)
                        ...++|+++||+++|.++|||-...+.               | +.  ...|...+  +.++...++.     .++++
T Consensus       242 r~~~a~~rgi~~ll~~Q~~~gg~~~~Wg~Qhd~~tl~P~~aR~yE~~sls~~eS~~i~--~~LM~~~~ps~~~~~aI~~a  319 (408)
T d1r76a_         242 RALEATNAAIHCIVETQVVQDGKRLGWGQQHDALTLRPTSARNFEPAALSSTESARIL--LFLMEIEAPSDAVKQAIRGG  319 (408)
T ss_dssp             HHHHHHHHHHHHHHHHSCEETTEECCCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHH--HHHTTSSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccCCCcChHhhccCccccCcccccccCChhhhhhhHHHHH--HHHHhCCCCChhHHHHHHHH
Confidence              135789999999999999996433221               1 11  12343333  3333322221     27889


Q ss_pred             HHHHHhccccCCccCCC
Q 026402          202 GWWLCERQVKSGGLNGR  218 (239)
Q Consensus       202 ~~~L~~~Q~~~GGf~~~  218 (239)
                      +.||.+.|.+++++...
T Consensus       320 v~Wl~~~~~~~~~~~~~  336 (408)
T d1r76a_         320 VAWLNTSVIRDRAWVKS  336 (408)
T ss_dssp             HHHHHHSCCCC------
T ss_pred             HHHHHhcccCCceeeec
Confidence            99999999988888543

>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Azospirillum irakense [TaxId: 34011]

Probab=98.88  E-value=7.8e-09  Score=88.22  Aligned_cols=165  Identities=11%  Similarity=0.055  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHcccCCCCccccc--------------------------------------cccchHHHHHHHHHHHHhhC
Q 026402            6 ADKHVKYIISVEKKKDSFESVV--------------------------------------MEHLRLNGAYWGLTTLDILG   47 (239)
Q Consensus         6 ~~~~~~yl~~~q~~dg~~~~~~--------------------------------------~~~~~~~~~y~al~~l~ll~   47 (239)
                      ..++.+.|+..|+++|||....                                      ....|-..|...+..|+.+-
T Consensus        83 A~~iAd~lL~~Q~p~GGWpKn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TiDN~aTt~el~~La~~~  162 (408)
T d1r76a_          83 ARHVADVIVSFQTPAGGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQVV  162 (408)
T ss_dssp             HHHHHHHHHHHCCTTSCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCCCCCccccccccccchhhhhhhccccccccchhhhhhhhhhcccCCCcCcchHHHHHHHHHHHH
Confidence            4567888999999999995310                                      01223334566666665442


Q ss_pred             C---C-C----CcCHHHHHHHHHhccCCCCCCCCCCC----CCCch----hHHHHHHHHHHhc----CCCCCCC------
Q 026402           48 K---L-D----AVDEEDVISWILKCQDESGGFAGNIG----HDPHV----LYTLSAVQVLALF----DKVDILD------  101 (239)
Q Consensus        48 ~---~-~----~~~~~~~i~~l~~~q~~dGgf~~~~~----~~~~~----~~T~~al~~L~~l----~~~~~~~------  101 (239)
                      .   . .    .....++++||++.|++||||+.+..    +..++    ..+..++..|...    +.+..++      
T Consensus       163 ~~~~~~~~~~y~~a~~~~~~~ll~~Q~~~Ggwpqf~p~~~~Y~~~ItfND~~m~~~l~~l~~~~~~~~~~~~~~~~~r~r  242 (408)
T d1r76a_         163 SQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAIRTR  242 (408)
T ss_dssp             HHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHHHHH
T ss_pred             HHcCcccchhHHHHHHHHHHHHHHhhCCCCCccccCCCCcccccccccCchHHHHHHHHHHHHHHhccccccCCHHHHHH
Confidence            1   1 1    11466899999999999999987642    11221    2333344444332    2222222      


Q ss_pred             ----HHHHHHHHHhccCCCCCcccCCCCC----------------CCcchhHHHHhHHHhhc--cCCh---hcHHHHHHH
Q 026402          102 ----ADKVSNYIVGLQNEDGSFSGDIWGE----------------VDTRFSYIAICCLSILQ--RLDK---INVDKAVEY  156 (239)
Q Consensus       102 ----~~~~~~~l~~~Q~~dGgf~~~~~~~----------------~d~~~ty~al~~l~~l~--~~~~---~~~~~~~~~  156 (239)
                          ++++++||.+.|.++|||.+.+...                +-+..+-++..++.|+.  .+++   ..++++++|
T Consensus       243 ~~~a~~rgi~~ll~~Q~~~gg~~~~Wg~Qhd~~tl~P~~aR~yE~~sls~~eS~~i~~~LM~~~~ps~~~~~aI~~av~W  322 (408)
T d1r76a_         243 ALEATNAAIHCIVETQVVQDGKRLGWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRGGVAW  322 (408)
T ss_dssp             HHHHHHHHHHHHHHHSCEETTEECCCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCCCcChHhhccCccccCcccccccCChhhhhhhHHHHHHHHHhCCCCChhHHHHHHHHHHH
Confidence                5889999999999999976543211                11222223333333333  3332   258899999


Q ss_pred             HHhccCCCCCccCC
Q 026402          157 IVSCKNLDGGFGCT  170 (239)
Q Consensus       157 l~~~Q~~dGGf~~~  170 (239)
                      |.+.|-+||.|...
T Consensus       323 l~~~~~~~~~~~~~  336 (408)
T d1r76a_         323 LNTSVIRDRAWVKS  336 (408)
T ss_dssp             HHHSCCCC------
T ss_pred             HHhcccCCceeeec
Confidence            99999999998653

>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Complement components
domain: C3D, a C3 fragment and ligand for complement receptor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=3.1e-08  Score=81.03  Aligned_cols=161  Identities=20%  Similarity=0.184  Sum_probs=96.7

Q ss_pred             HHHHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCCCCCC----HHHHHHHHHhccCCCCCcccCCCC----
Q 026402           54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILD----ADKVSNYIVGLQNEDGSFSGDIWG----  125 (239)
Q Consensus        54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~~----~~~~~~~l~~~Q~~dGgf~~~~~~----  125 (239)
                      ++++++-|.+.|++||||+++++..++.+.|.+++..|.........+    .+.+..++.+.|..+|.|......    
T Consensus        56 i~~gi~rl~~~Q~~dGgf~~w~~~~~~~~lTayv~~~L~~A~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~e~~~~~~~~  135 (294)
T d1c3da_          56 IKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQE  135 (294)
T ss_dssp             HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGG
T ss_pred             HHHHHHHHHHhcCCCCCcccCCCCCCCcchHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhhhhcCCCccccchHhHHH
Confidence            556777889999999999999999999999999999998876544333    244566777888888887642110    


Q ss_pred             ---------CCCcchhHHHHhHHHhhccC-----Ch--hcHHHHHHHHHhc-----------------------------
Q 026402          126 ---------EVDTRFSYIAICCLSILQRL-----DK--INVDKAVEYIVSC-----------------------------  160 (239)
Q Consensus       126 ---------~~d~~~ty~al~~l~~l~~~-----~~--~~~~~~~~~l~~~-----------------------------  160 (239)
                               ..+...+..++.+|...+..     ..  ..+.++..|+.+.                             
T Consensus       136 ~~~~~~~~~~~~~~~~ay~~~~L~~~~~~~~~~~~~~~~~~~ka~~~l~~~~~~~~~~~~la~~~~~l~~~~~~~~~~~~  215 (294)
T d1c3da_         136 MIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLN  215 (294)
T ss_dssp             GGGGGGSCTTHHHHHHHHHHHHHHHTHHHHTTTCTTHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred             HhcccccccchHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHhHHHHHHHHH
Confidence                     01111222233333332221     00  1122333332210                             


Q ss_pred             ----cCCCCCccCCCCC-CCchhhHHHHHHHHHHhCCCCCCCHHHHHHHHHhccccCCccC
Q 026402          161 ----KNLDGGFGCTPGG-ESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLN  216 (239)
Q Consensus       161 ----Q~~dGGf~~~~~~-~s~~~~T~~al~aL~~l~~~~~~~~~~~~~~L~~~Q~~~GGf~  216 (239)
                          ...++.+-..++. .++...|.++|.++...+  +....+++++||.+.+...|||.
T Consensus       216 ~~~~~~~~~~~w~~~~~~~~~ietta~alla~~~~~--~~~~~~~~~~wL~~qr~~~g~w~  274 (294)
T d1c3da_         216 KFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLK--DFDFVPPVVRWLNEQRYYGGGYG  274 (294)
T ss_dssp             HHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHTT--CTTTHHHHHHHHHHTTCCCCSTT
T ss_pred             HHHHhcccCCCCCCCCCccchHHHHHHHHHHHHhcC--ChhhHHHHHHHHHHcccCCCCCc
Confidence                1134544333322 245566777776665443  44567889999999888889986

>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Cellvibrio cellulosa [TaxId: 155077]

Probab=98.79  E-value=2.2e-09  Score=88.80  Aligned_cols=159  Identities=16%  Similarity=0.170  Sum_probs=90.1

Q ss_pred             HHHHHHHhccCCCCCCCCCCC-----C------C--CchhHHHHHHHHHHhcCCC--C---CCCHHHHHHHHHhccCCCC
Q 026402           56 DVISWILKCQDESGGFAGNIG-----H------D--PHVLYTLSAVQVLALFDKV--D---ILDADKVSNYIVGLQNEDG  117 (239)
Q Consensus        56 ~~i~~l~~~q~~dGgf~~~~~-----~------~--~~~~~T~~al~~L~~l~~~--~---~~~~~~~~~~l~~~Q~~dG  117 (239)
                      +..++|++.|+++|||+....     .      .  -+-..|..++..|..+...  +   ...++++++||.+.|++||
T Consensus        27 ~~Ad~ll~~Q~~~GGW~Kn~d~~~~~~~~~~~~~sTiDn~AT~~~i~~La~~~~~~~d~~~~~A~~Rgi~~LL~~Q~~nG  106 (324)
T d1gxma_          27 SRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTG  106 (324)
T ss_dssp             GGHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             hhhHHHHhcCCCCCCCCccccccCCCCCccCCCCCcccChHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhccCCC
Confidence            467899999999999973211     0      0  1223566666666544211  1   1136889999999999999


Q ss_pred             CcccC-CCCCC-CcchhHH---HHhHHHhhcc------------CC-------hhcHHHHHHHHHhccCCCCCccCCCCC
Q 026402          118 SFSGD-IWGEV-DTRFSYI---AICCLSILQR------------LD-------KINVDKAVEYIVSCKNLDGGFGCTPGG  173 (239)
Q Consensus       118 gf~~~-~~~~~-d~~~ty~---al~~l~~l~~------------~~-------~~~~~~~~~~l~~~Q~~dGGf~~~~~~  173 (239)
                      ||... |.... ....||.   .+.++.++..            ++       ...++|+++||+++|-++|||-...+.
T Consensus       107 GWpqf~P~~~~y~~~ItFND~am~~vl~lL~~~a~~~~~~~~~~~~~~~r~r~~~A~~Rgi~~lL~~Q~~~gg~~t~Wg~  186 (324)
T d1gxma_         107 ALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVWCA  186 (324)
T ss_dssp             CCBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCCS
T ss_pred             CccccccCCCCcccccCCCcHHHHHHHHHhchhhccccchhHHHhhhhhhHhHHHHHHHHHHHHHHhhcccCCCCChhhh
Confidence            99763 22210 0111221   1222222211            11       134689999999999999986433221


Q ss_pred             ---------------C-C--chhhHHHHHHHHHHhCCCCCCC----HHHHHHHHHhccccCCccC
Q 026402          174 ---------------E-S--HSGQIFCCVGALAIAGALHHVD----KDLLGWWLCERQVKSGGLN  216 (239)
Q Consensus       174 ---------------~-s--~~~~T~~al~aL~~l~~~~~~~----~~~~~~~L~~~Q~~~GGf~  216 (239)
                                     | +  ....|...+  +.++...+..+    +++++.||.+++....|+.
T Consensus       187 Qhd~~tl~Pa~AR~yE~~sls~~ES~~iv--~~LM~~~~s~~i~~ai~~avaWl~~~k~~~~~~~  249 (324)
T d1gxma_         187 QHGALDYQPKKARAYELESLSGSESVGVL--AFLMTQPQTAEIEQAVRAGVAWFNSPRTYLEGYT  249 (324)
T ss_dssp             EECTTTCCBCCCSTTCCSSEETTTHHHHH--HHHTTSCCCHHHHHHHHHHHHHHTCTTTSEEEEE
T ss_pred             ccCcccccccccccccChhhhhhhHHHHH--HHHhhcCCcHHHHHHHHHHHHHHHhchhccccee
Confidence                           1 1  112343333  33444332222    5778899999887666663

>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Complement components
domain: C3D, a C3 fragment and ligand for complement receptor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=9.4e-07  Score=71.88  Aligned_cols=67  Identities=16%  Similarity=0.103  Sum_probs=48.9

Q ss_pred             HHHHHHHHHcccCCCCccccccccchHHHHHHHHHHHHhhCCCCCc---C-HHHHHHHHHhccCCCCCCCC
Q 026402            7 DKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAV---D-EEDVISWILKCQDESGGFAG   73 (239)
Q Consensus         7 ~~~~~yl~~~q~~dg~~~~~~~~~~~~~~~y~al~~l~ll~~~~~~---~-~~~~i~~l~~~q~~dGgf~~   73 (239)
                      +++++=|.+.|++||||..|+...++.+.|-|++..|..+.....+   . .+....++.+.|+.+|.|..
T Consensus        57 ~~gi~rl~~~Q~~dGgf~~w~~~~~~~~lTayv~~~L~~A~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~e  127 (294)
T d1c3da_          57 KKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQE  127 (294)
T ss_dssp             HHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCC
T ss_pred             HHHHHHHHHhcCCCCCcccCCCCCCCcchHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhhhhcCCCccc
Confidence            4555567778999999999988788899999999999888654211   2 23344455667888877754

>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=1.2e-07  Score=76.95  Aligned_cols=75  Identities=19%  Similarity=0.078  Sum_probs=63.2

Q ss_pred             HHHhHHHhhcc-CChhcHHHHHHHHHhccCCCCCccCCCCCCCchhhHHHHHHHHHHhCCC-CCCCHHHHHHHHHhc
Q 026402          134 IAICCLSILQR-LDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGAL-HHVDKDLLGWWLCER  208 (239)
Q Consensus       134 ~al~~l~~l~~-~~~~~~~~~~~~l~~~Q~~dGGf~~~~~~~s~~~~T~~al~aL~~l~~~-~~~~~~~~~~~L~~~  208 (239)
                      ..+.++++.+. ++....+++++||.++|++||||+..+++.++...|..+..||.++|.. +....+++.+||+++
T Consensus         8 ~~Vial~i~g~~~~~e~~~e~~ryL~~~Q~~DGgWg~~~~g~s~i~~T~~ay~ALrl~G~~~~~p~m~rAr~wI~~~   84 (279)
T d1w6ka2           8 GLLITCHVARIPLPAGYREEIVRYLRSVQLPDGGWGLHIEDKSTVFGTALNYVSLRILGVGPDDPDLVRARNILHKK   84 (279)
T ss_dssp             HHHHHHHHHTCCCCTTHHHHHHHHHHHHSCTTSCBCSBTTSCCBHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHT
T ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCCccCCCCCCccHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhC
Confidence            35667788886 4556689999999999999999999999999999999999999999963 233478999999886

>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Family 10 polysaccharide lyase
family: Family 10 polysaccharide lyase
domain: Polygalacturonic acid lyase (pectate lyase)
species: Cellvibrio cellulosa [TaxId: 155077]

Probab=98.42  E-value=1.2e-07  Score=78.18  Aligned_cols=162  Identities=12%  Similarity=0.081  Sum_probs=92.6

Q ss_pred             HHHHHHHHcccCCCCccccc--c-----------ccchHHHHHHHHHHHHhhCC---CC--CcCHHHHHHHHHhccCCCC
Q 026402            8 KHVKYIISVEKKKDSFESVV--M-----------EHLRLNGAYWGLTTLDILGK---LD--AVDEEDVISWILKCQDESG   69 (239)
Q Consensus         8 ~~~~yl~~~q~~dg~~~~~~--~-----------~~~~~~~~y~al~~l~ll~~---~~--~~~~~~~i~~l~~~q~~dG   69 (239)
                      +..+.|.+.|+++|||....  .           ...|-..|.-.+..|+.+..   .+  ....+++++||++.|++||
T Consensus        27 ~~Ad~ll~~Q~~~GGW~Kn~d~~~~~~~~~~~~~sTiDn~AT~~~i~~La~~~~~~~d~~~~~A~~Rgi~~LL~~Q~~nG  106 (324)
T d1gxma_          27 SRADVVLSYQQNNGGWPKNLDYNSVGNGGGGNESGTIDNGATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYSTG  106 (324)
T ss_dssp             GGHHHHHHTCCTTSCCCSCCCTTTCCCCCCCCSCEECGGGTTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             hhhHHHHhcCCCCCCCCccccccCCCCCccCCCCCcccChHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhccCCC
Confidence            45678888999999995211  0           01244445555555554432   11  1257889999999999999


Q ss_pred             CCCCCC-C---CCCch----hHHHHHHHHHHhc--CC----CCCC----------CHHHHHHHHHhccCCCCCcccCCCC
Q 026402           70 GFAGNI-G---HDPHV----LYTLSAVQVLALF--DK----VDIL----------DADKVSNYIVGLQNEDGSFSGDIWG  125 (239)
Q Consensus        70 gf~~~~-~---~~~~~----~~T~~al~~L~~l--~~----~~~~----------~~~~~~~~l~~~Q~~dGgf~~~~~~  125 (239)
                      ||+.+. -   ...++    ..+..++..|...  +.    ...+          .++++++||.+.|.++|||.+.+..
T Consensus       107 GWpqf~P~~~~y~~~ItFND~am~~vl~lL~~~a~~~~~~~~~~~~~~~r~r~~~A~~Rgi~~lL~~Q~~~gg~~t~Wg~  186 (324)
T d1gxma_         107 ALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQWKQNGVLTVWCA  186 (324)
T ss_dssp             CCBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEECCCCS
T ss_pred             CccccccCCCCcccccCCCcHHHHHHHHHhchhhccccchhHHHhhhhhhHhHHHHHHHHHHHHHHhhcccCCCCChhhh
Confidence            999862 1   11222    1222233333211  11    0111          1589999999999999997654321


Q ss_pred             ---C-------------CCcchhHHHHhHHHhhccC-Ch---hcHHHHHHHHHhccCCCCCccC
Q 026402          126 ---E-------------VDTRFSYIAICCLSILQRL-DK---INVDKAVEYIVSCKNLDGGFGC  169 (239)
Q Consensus       126 ---~-------------~d~~~ty~al~~l~~l~~~-~~---~~~~~~~~~l~~~Q~~dGGf~~  169 (239)
                         +             +-+...-++-.++.++... ++   ..++.+++|+.+.+..++|+..
T Consensus       187 Qhd~~tl~Pa~AR~yE~~sls~~ES~~iv~~LM~~~~s~~i~~ai~~avaWl~~~k~~~~~~~~  250 (324)
T d1gxma_         187 QHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQTAEIEQAVRAGVAWFNSPRTYLEGYTY  250 (324)
T ss_dssp             EECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCCCHHHHHHHHHHHHHHTCTTTSEEEEEE
T ss_pred             ccCcccccccccccccChhhhhhhHHHHHHHHhhcCCcHHHHHHHHHHHHHHHhchhcccceee
Confidence               1             1112122233333333322 11   2578899999999888777744

>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Complement components
domain: C4adg fragment of complement factor C4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=2.7e-06  Score=70.21  Aligned_cols=68  Identities=22%  Similarity=0.284  Sum_probs=57.4

Q ss_pred             HHHHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCCCCC---CHHHHHHHHHhccCCCCCccc
Q 026402           54 EEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDIL---DADKVSNYIVGLQNEDGSFSG  121 (239)
Q Consensus        54 ~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~~~~---~~~~~~~~l~~~Q~~dGgf~~  121 (239)
                      ++++++-|+++|++||||+++++.+++.+.|.+++..|..+.....+   .+.+.+.|+...|..+|+|..
T Consensus        54 i~~g~~rl~~~Q~~dGgf~~w~~~~~~~wlTayv~~~L~~A~~~g~~~~~~~~~~~~~~l~~q~~~g~~~~  124 (326)
T d1hzfa_          54 IQKGYMRIQQFRKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQD  124 (326)
T ss_dssp             HHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCC
T ss_pred             HHHHHHHHHHhcCCCCCcccCCCCCCchHHHHHHHHHHHHHHHhcccchhhHHhHHHHHHHHhhhcccccc
Confidence            56677788999999999999999999999999999999887654333   356788999999999999865

>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=1.4e-06  Score=70.41  Aligned_cols=74  Identities=19%  Similarity=0.135  Sum_probs=61.7

Q ss_pred             HHHHHHhhCCC-CCcCHHHHHHHHHhccCCCCCCCCCCCCCCchhHHHHHHHHHHhcCCC-CCCCHHHHHHHHHhc
Q 026402           39 GLTTLDILGKL-DAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKV-DILDADKVSNYIVGL  112 (239)
Q Consensus        39 al~~l~ll~~~-~~~~~~~~i~~l~~~q~~dGgf~~~~~~~~~~~~T~~al~~L~~l~~~-~~~~~~~~~~~l~~~  112 (239)
                      .+.++.++|.. +...++++++||.++|++||||+...++.+++..|.-+..+|.+++.- +.....++.+||.+.
T Consensus         9 ~Vial~i~g~~~~~e~~~e~~ryL~~~Q~~DGgWg~~~~g~s~i~~T~~ay~ALrl~G~~~~~p~m~rAr~wI~~~   84 (279)
T d1w6ka2           9 LLITCHVARIPLPAGYREEIVRYLRSVQLPDGGWGLHIEDKSTVFGTALNYVSLRILGVGPDDPDLVRARNILHKK   84 (279)
T ss_dssp             HHHHHHHHTCCCCTTHHHHHHHHHHHHSCTTSCBCSBTTSCCBHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHT
T ss_pred             HHHHHhhcCCCCCHHHHHHHHHHHHHhhcCCCCccCCCCCCccHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhC
Confidence            46777888864 344689999999999999999999999999999999999999999752 233468999999987