Citrus Sinensis ID: 026405

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MEPNDTQQLQQLNSYFHHPTATTTSGAAATTGPSPTNGLLPSQHQHHNNNNNNDGGGGGGGMVYPHSVASSAMTSTLEPAKKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQRELHQQQQQLLGSGGSGSSYSGAPGKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITYELRAGPQGVWETVDGVMSQRRLSTTYDEHGSV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHcccccEEEEEccccEEEEEEEcccccccccEEEEEEccHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEEccEEEEEEEEcccccccEEEEEcEEEEEccEEEEEEEEccccEEccccccccc
Coil and Loop (DISEMBL)
MEPNDTQQLQQlnsyfhhptatttsgaaattgpsptngllpsqhqhhnnnnnndgggggggmvyphsvassamtstlepakkkrgrprkygtpeqALAAKKTAAYSNSKGKREQRELHQQQQQLlgsggsgssysgapgksqlggignlgqgftphvISVAAGEDVGQKIMLFMQQSKREICILSasgsisnaslrqpatsggnityelragpqgvweTVDGVMSqrrlsttydehgsv
Flexible Loop (DISEMBL)
MEPNDTQQLQQLNSYFHHPTATTTSGAAATTGPSPTNGLLPSQHQHHNNNNNNDGGGGGGGMVYPHSVASSAMTStlepakkkrgrprkygtpeqalaakktaAYSNSKGKREQRELHQQQQQLLGSGGSGSSYSGAPGKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITYELRAGPQGVWETVDGVMSQrrlsttydehgsv
Low Complexity Region (SEG)
MEPNDTQQLQQLNSYFHHptatttsgaaattgpsptNGLLPSQHQHHnnnnnndgggggggMVYPHSVASSAMTSTLEPAKKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQRELHqqqqqllgsggsgssysgAPGKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITYELRAGPQGVWETVDGVMSQRRLSTTYDEHGSV
Disordered region (IsUnstruct)
************************************************************************************************************************************************GIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSA*****************NITYELRAGPQGVWETVDG*****************
Disordered Region (DISOPRED)
***************************************************************************************************************************************************NLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITYELRAGPQGVWETVDGVMS**************
Disordered Region (DISEMBL)
********LQQLNSYFHHPTATTTSGAAATTGPSPTNGLLPSQHQHHNNNNNNDGGGGGGGMVYPHSVAS*****************************************************************GAPGKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITYELRAGPQGVWETVDGVMSQRRLS*********
Disordered Region (DISPRO)
**********************T**GAAATTGPSPTNGLLPSQHQHHNNNNNNDGGGGGGGMV******************************EQALAAKK********************************************IGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITYELRAGPQGVWETVDGVMSQRRLST********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEPNDTQQLQQLNSYFHHPTATTTSGAAATTGPSPTNGLLPSQHQHHNNNNNNDGGGGGGGMVYPHSVASSAMTSTLEPAKKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQRELHQQQQQLLGSGGSGSSYSGAPGKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITYELRAGPQGVWETVDGVMSQRRLSTTYDEHGSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
356506003	346	PREDICTED: uncharacterized protein LOC10	0.728	0.502	0.546	5e-41
356573149	356	PREDICTED: uncharacterized protein LOC10	0.652	0.438	0.616	8e-41
225463960	357	PREDICTED: uncharacterized protein LOC10	0.728	0.487	0.493	1e-39
297833142	408	hypothetical protein ARALYDRAFT_477717 [	0.753	0.441	0.531	4e-39
79596510	309	AT hook motif DNA-binding family protein	0.753	0.582	0.536	5e-39
6175163	418	unknown protein [Arabidopsis thaliana] g	0.753	0.430	0.536	1e-38
30679188	411	AT hook motif DNA-binding family protein	0.753	0.437	0.536	2e-38
118484865	369	unknown [Populus trichocarpa]	0.811	0.525	0.504	2e-37
449443249	362	PREDICTED: uncharacterized protein LOC10	0.824	0.544	0.566	5e-37
326367379	351	DNA-binding family protein [Coffea arabi	0.803	0.547	0.486	3e-36

>gi|356506003|ref|XP_003521778.1| PREDICTED: uncharacterized protein LOC100809675 [Glycine max]

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 118/216 (54%), Positives = 133/216 (61%), Gaps = 42/216 (19%)

Query: 1   MEPNDTQQLQQLNSYFHHPTATTTSGAAAT---TGPSPTNGLLPSQHQHHNNNNNNDGGG 57
           MEPND     QL S+FHH               T  SPTNGLLP+    H          
Sbjct: 1   MEPND----NQLTSFFHHHHQQHQHHQPPPPPQTTASPTNGLLPNADGSH---------- 46

Query: 58  GGGGMVYPHSVASSAMTSTLEPAKKKRGRPRKYGTPEQALAAKKTA---AYSNSKGKREQ 114
               ++YPHSVAS A++S LEPAK+KRGRPRKYGTPEQALAAKK A   ++S S  K+  
Sbjct: 47  ----ILYPHSVAS-AVSSQLEPAKRKRGRPRKYGTPEQALAAKKAATTLSHSFSVDKKPH 101

Query: 115 RELHQQQQQLLGSGGSGSSYSGAPGKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFM 174
                  +                 KS    +GN GQGFTPHVISVAAGEDVGQKIMLFM
Sbjct: 102 SPTFPSSK-----------------KSHSFALGNAGQGFTPHVISVAAGEDVGQKIMLFM 144

Query: 175 QQSKREICILSASGSISNASLRQPATSGGNITYELR 210
           QQS+RE+CILSASGSISNASLRQPATSGG+I YE R
Sbjct: 145 QQSRREMCILSASGSISNASLRQPATSGGSIAYEGR 180

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573149|ref|XP_003554726.1| PREDICTED: uncharacterized protein LOC100816781 [Glycine max]

 Score =  172 bits (437), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 111/180 (61%), Positives = 123/180 (68%), Gaps = 24/180 (13%)

Query: 31  TGPSPTNGLLPSQHQHHNNNNNNDGGGGGGGMVYPHSVASSAMTSTLEPAKKKRGRPRKY 90
           T  SPTNGLLP+    H              M+YPHSVAS A++S LEPAK+KRGRPRKY
Sbjct: 35  TTASPTNGLLPNADGSH--------------MLYPHSVAS-AVSSQLEPAKRKRGRPRKY 79

Query: 91  GTPEQALAAKKTAAYSNSKGKREQRELHQQQQQLLGSGGSGSSYSGAPGKSQLGGIGNLG 150
           GTPEQALAAKK A  S S+     ++ H           S  S S A        +GN G
Sbjct: 80  GTPEQALAAKKAATTS-SQSFSADKKPHSPTFPSSSFTSSKKSLSFA--------LGNAG 130

Query: 151 QGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITYELR 210
           QGFTPHVISVAAGEDVGQKIMLFMQQS+RE+CILSASGSISNASLRQPATSGG+ITYE R
Sbjct: 131 QGFTPHVISVAAGEDVGQKIMLFMQQSRREMCILSASGSISNASLRQPATSGGSITYEGR 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463960|ref|XP_002270792.1| PREDICTED: uncharacterized protein LOC100261576 [Vitis vinifera] gi|296087886|emb|CBI35169.3| unnamed protein product [Vitis vinifera]

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/225 (49%), Positives = 130/225 (57%), Gaps = 51/225 (22%)

Query: 1   MEPNDTQQLQQLNSYFHHPTATT---------------TSGAAATTGPSPTNGLLPSQHQ 45
           MEPNDT+    L SYFHH                    T    A T  SP+NGLLP   +
Sbjct: 1   MEPNDTR----LTSYFHHHQQQPQPPPPPPPQPQPHHQTQNPVAATAASPSNGLLPPSER 56

Query: 46  HHNNNNNNDGGGGGGGMVYPHSVASSAMTSTLEPAKKKRGRPRKYGTPEQALAAKKTAAY 105
                           + Y HSV S A+TS  E  ++KRGRPRKYGT EQ L+AKK+ + 
Sbjct: 57  PP--------------LGYHHSVPS-AVTSPPETVRRKRGRPRKYGTSEQGLSAKKSPSS 101

Query: 106 SNSKGKREQRELHQQQQQLLGSGGSGSSYSGAPGKSQLGGIGNLGQGFTPHVISVAAGED 165
           S    K++++          G GGS         KSQL  +GN GQ FTPHVI+VA+GED
Sbjct: 102 SVPVPKKKEQ----------GLGGSSK-------KSQLVSLGNAGQSFTPHVITVASGED 144

Query: 166 VGQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITYELR 210
           V QKIM FMQQSKREICI+SASGSISNASLRQPATSGGN+ YE R
Sbjct: 145 VAQKIMFFMQQSKREICIMSASGSISNASLRQPATSGGNVAYEGR 189

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833142|ref|XP_002884453.1| hypothetical protein ARALYDRAFT_477717 [Arabidopsis lyrata subsp. lyrata] gi|297330293|gb|EFH60712.1| hypothetical protein ARALYDRAFT_477717 [Arabidopsis lyrata subsp. lyrata]

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 101/190 (53%), Positives = 130/190 (68%), Gaps = 10/190 (5%)

Query: 19  PTATTTSGAAATTGPSPTNGLLPSQHQHHNNNNNNDGGGGGGGMVYPHSVASSAMTSTLE 78
           PT   T+ +     PS  NGL P Q Q  +  N+    G     VYPHSV SSA+T+ +E
Sbjct: 45  PTTVATTASTGNAVPSSNNGLFPPQPQPQHQPND----GSSSLAVYPHSVPSSAVTAPME 100

Query: 79  PAKKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQRELHQQQQQLLGSGGSGSSYSGAP 138
           P K+KRGRPRKY TPEQALAAKK A+ ++S   +E+REL         +GG+ S+ SG+ 
Sbjct: 101 PLKRKRGRPRKYVTPEQALAAKKMASSASSSSAKERRELAAV------TGGTVSTNSGSS 154

Query: 139 GKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQP 198
            KSQLG +G  GQ FTPH++++A GEDV QKIM+F  QSK E+C+LSASG+ISNASLRQP
Sbjct: 155 KKSQLGSVGKTGQCFTPHIVNIAPGEDVAQKIMIFANQSKHELCVLSASGTISNASLRQP 214

Query: 199 ATSGGNITYE 208
           AT+G N+ +E
Sbjct: 215 ATAGVNLPHE 224

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79596510|ref|NP_850512.2| AT hook motif DNA-binding family protein [Arabidopsis thaliana] gi|332640580|gb|AEE74101.1| AT hook motif DNA-binding family protein [Arabidopsis thaliana]

 Score =  167 bits (422), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 102/190 (53%), Positives = 130/190 (68%), Gaps = 10/190 (5%)

Query: 19  PTATTTSGAAATTGPSPTNGLLPSQHQHHNNNNNNDGGGGGGGMVYPHSVASSAMTSTLE 78
           PT   T+ +     PS  NGL P Q Q  +  N+    G     VYPHSV SSA+T+ +E
Sbjct: 47  PTTVATTASTGNAVPSSNNGLFPPQPQPQHQPND----GSSSLAVYPHSVPSSAVTAPME 102

Query: 79  PAKKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQRELHQQQQQLLGSGGSGSSYSGAP 138
           P K+KRGRPRKY TPEQALAAKK A+ ++S   +++REL         +GG+ S+ SG+ 
Sbjct: 103 PVKRKRGRPRKYVTPEQALAAKKLASSASSSSAKQRRELAAV------TGGTVSTNSGSS 156

Query: 139 GKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQP 198
            KSQLG +G  GQ FTPH++++A GEDV QKIM+F  QSK E+C+LSASG+ISNASLRQP
Sbjct: 157 KKSQLGSVGKTGQCFTPHIVNIAPGEDVVQKIMMFANQSKHELCVLSASGTISNASLRQP 216

Query: 199 ATSGGNITYE 208
           A SGGN+ YE
Sbjct: 217 APSGGNLPYE 226

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6175163|gb|AAF04889.1|AC011437_4 unknown protein [Arabidopsis thaliana] gi|119657372|tpd|FAA00285.1| TPA: AT-hook motif nuclear localized protein 14 [Arabidopsis thaliana]

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/190 (53%), Positives = 130/190 (68%), Gaps = 10/190 (5%)

Query: 19  PTATTTSGAAATTGPSPTNGLLPSQHQHHNNNNNNDGGGGGGGMVYPHSVASSAMTSTLE 78
           PT   T+ +     PS  NGL P Q Q  +  N+    G     VYPHSV SSA+T+ +E
Sbjct: 47  PTTVATTASTGNAVPSSNNGLFPPQPQPQHQPND----GSSSLAVYPHSVPSSAVTAPME 102

Query: 79  PAKKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQRELHQQQQQLLGSGGSGSSYSGAP 138
           P K+KRGRPRKY TPEQALAAKK A+ ++S   +++REL         +GG+ S+ SG+ 
Sbjct: 103 PVKRKRGRPRKYVTPEQALAAKKLASSASSSSAKQRRELAAV------TGGTVSTNSGSS 156

Query: 139 GKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQP 198
            KSQLG +G  GQ FTPH++++A GEDV QKIM+F  QSK E+C+LSASG+ISNASLRQP
Sbjct: 157 KKSQLGSVGKTGQCFTPHIVNIAPGEDVVQKIMMFANQSKHELCVLSASGTISNASLRQP 216

Query: 199 ATSGGNITYE 208
           A SGGN+ YE
Sbjct: 217 APSGGNLPYE 226

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30679188|ref|NP_187109.2| AT hook motif DNA-binding family protein [Arabidopsis thaliana] gi|119935918|gb|ABM06034.1| At3g04590 [Arabidopsis thaliana] gi|225898615|dbj|BAH30438.1| hypothetical protein [Arabidopsis thaliana] gi|332640581|gb|AEE74102.1| AT hook motif DNA-binding family protein [Arabidopsis thaliana]

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/190 (53%), Positives = 130/190 (68%), Gaps = 10/190 (5%)

Query: 19  PTATTTSGAAATTGPSPTNGLLPSQHQHHNNNNNNDGGGGGGGMVYPHSVASSAMTSTLE 78
           PT   T+ +     PS  NGL P Q Q  +  N+    G     VYPHSV SSA+T+ +E
Sbjct: 47  PTTVATTASTGNAVPSSNNGLFPPQPQPQHQPND----GSSSLAVYPHSVPSSAVTAPME 102

Query: 79  PAKKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQRELHQQQQQLLGSGGSGSSYSGAP 138
           P K+KRGRPRKY TPEQALAAKK A+ ++S   +++REL         +GG+ S+ SG+ 
Sbjct: 103 PVKRKRGRPRKYVTPEQALAAKKLASSASSSSAKQRRELAAV------TGGTVSTNSGSS 156

Query: 139 GKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQP 198
            KSQLG +G  GQ FTPH++++A GEDV QKIM+F  QSK E+C+LSASG+ISNASLRQP
Sbjct: 157 KKSQLGSVGKTGQCFTPHIVNIAPGEDVVQKIMMFANQSKHELCVLSASGTISNASLRQP 216

Query: 199 ATSGGNITYE 208
           A SGGN+ YE
Sbjct: 217 APSGGNLPYE 226

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484865|gb|ABK94299.1| unknown [Populus trichocarpa]

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 113/224 (50%), Positives = 136/224 (60%), Gaps = 30/224 (13%)

Query: 1   MEPNDTQQLQQ-LNSYFHHPTATTTSGAAATTGPSPTNGLLPSQHQHHNNNNNNDGGGGG 59
           MEPND+ Q QQ   SYF   T TTT+   + T     NGLLP  HQ  ++         G
Sbjct: 1   MEPNDSHQQQQHFTSYFSTTTTTTTTTTPSPT-----NGLLPP-HQPTDSTTPT-----G 49

Query: 60  GGMVYPHSVASSAMTSTLEPA-------------KKKRGRPRKYGTPEQALAAKKTAAYS 106
             M+YPHS+  S   +                  K+KRGRPRKYGTPEQALAAKKTA+ +
Sbjct: 50  PHMLYPHSMGPSTTATVTGGGGAPVEAAAAAAAAKRKRGRPRKYGTPEQALAAKKTASSN 109

Query: 107 NSKGKREQRELHQQQQQLLGSGGSGSSYSGAPGKSQLGGIGNLGQGFTPHVISVAAGEDV 166
           ++   RE++E    Q     +  S S+YS    KSQ   +GN G GFTPHVI+VA GEDV
Sbjct: 110 SAAAYREKKE---HQAGSSSTISSFSAYSSK--KSQHASLGNAGHGFTPHVITVAEGEDV 164

Query: 167 GQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITYELR 210
            QKIM F+QQS RE+CILSASGSI +ASL QPATSGGNI+YE R
Sbjct: 165 TQKIMHFLQQSMREMCILSASGSILSASLSQPATSGGNISYEGR 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443249|ref|XP_004139392.1| PREDICTED: uncharacterized protein LOC101221844 [Cucumis sativus] gi|449520142|ref|XP_004167093.1| PREDICTED: uncharacterized protein LOC101229030 [Cucumis sativus]

 Score =  160 bits (404), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 120/212 (56%), Positives = 140/212 (66%), Gaps = 15/212 (7%)

Query: 1   MEPNDTQQLQQLNSYFHHPTATTTSGAAATTGPSPTNGLLPSQHQHHNNNNNNDGGGGGG 60
           MEPN+ Q    L+SYF              T  SPTNGLLP  H       ++D G    
Sbjct: 1   MEPNENQ----LSSYF----HHHQHHHQTPTTTSPTNGLLPPTHHLSAAAASSDAGPH-- 50

Query: 61  GMVYPHSVASSAMTST-LEPAKKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQR-ELH 118
            +VYPHSV S+A++S+ LEPA++KRGRPRKYGTPE+ALAAKK A  S+     + + EL 
Sbjct: 51  -VVYPHSVPSAAVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKKELA 109

Query: 119 QQQQQLLGSGGSGSSYSGAPGKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSK 178
                 L +  + SS+S    KSQL  +GN GQGF PHVI+VAAGEDVGQKIM FMQQ K
Sbjct: 110 SSSS--LNAVSASSSFSTPSKKSQLAALGNAGQGFAPHVINVAAGEDVGQKIMQFMQQCK 167

Query: 179 REICILSASGSISNASLRQPATSGGNITYELR 210
           REICILSASGSISNASLRQPA SGGNI YE R
Sbjct: 168 REICILSASGSISNASLRQPAASGGNIAYEGR 199

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326367379|gb|ADZ55297.1| DNA-binding family protein [Coffea arabica]

 Score =  157 bits (398), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 110/226 (48%), Positives = 133/226 (58%), Gaps = 34/226 (15%)

Query: 1   MEPNDTQQLQQLNSYFHH-----------PTATTTSGAAATTGPSPTNGLLPSQHQHHNN 49
           M+PN++ +L   +SYFHH           PTA TT+  + T   SPTNG+LP        
Sbjct: 1   MDPNESSEL---SSYFHHPQQPPPPSPLNPTAPTTAVGSNT---SPTNGILP-------- 46

Query: 50  NNNNDGGGGGGGMVYP--HSVASSAMTST---LEPAKKKRGRPRKYGTPEQALAAKKTAA 104
           N +N           P  +    S +TS    L+  K+KRGRPRKYGTP +A AAK+ ++
Sbjct: 47  NTSNPAASTTTTTSSPLVYGTVPSVVTSGGAGLDSGKRKRGRPRKYGTPGEAAAAKRLSS 106

Query: 105 YSNSKGKREQRELHQQQQQLLGSGGSGSSYSGAPGKSQLGGIGNLGQGFTPHVISVAAGE 164
            S +      ++         G   S +S      K QL   G+ GQ F PHVI+VAAGE
Sbjct: 107 ASTAASISPPKKKDLGFGGGGGGSTSSASSK----KYQLAASGSTGQSFIPHVITVAAGE 162

Query: 165 DVGQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITYELR 210
           DVGQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITYE R
Sbjct: 163 DVGQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITYEGR 208

Source: Coffea arabica

Species: Coffea arabica

Genus: Coffea

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
TAIR|locus:2084983	411	AT3G04590 [Arabidopsis thalian	0.803	0.467	0.469	3.6e-41
TAIR|locus:2051038	351	AT2G33620 [Arabidopsis thalian	0.548	0.373	0.417	2.7e-20
TAIR|locus:2153142	419	AHL4 "AT-HOOK MOTIF NUCLEAR LO	0.271	0.155	0.606	1.4e-19
TAIR|locus:2122684	404	AHL3 "AT-HOOK MOTIF NUCLEAR LO	0.610	0.361	0.402	2.4e-19
TAIR|locus:2118091	356	AHL1 "AT-hook motif nuclear-lo	0.263	0.176	0.571	5.2e-19
TAIR|locus:2178505	386	AT5G46640 [Arabidopsis thalian	0.539	0.334	0.416	5.6e-18
TAIR|locus:2126946	318	AT4G00200 [Arabidopsis thalian	0.552	0.415	0.4	1.6e-17
TAIR|locus:2141045	439	AT4G17950 [Arabidopsis thalian	0.301	0.164	0.506	2.1e-17
TAIR|locus:2132599	334	AT4G22770 [Arabidopsis thalian	0.242	0.173	0.551	2.5e-17
TAIR|locus:2050766	348	AT2G45850 [Arabidopsis thalian	0.518	0.356	0.371	2.2e-16

TAIR|locus:2084983 AT3G04590 [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 99/211 (46%), Positives = 121/211 (57%)

Query:     7 QQLQQLNS-YFHHX--------XXXXXXXXXXXXXXXXXNGLLPSQHQHHXXXXXXXXXX 57
             QQ Q+L S YFHH                          NGL P Q Q            
Sbjct:    26 QQQQRLTSPYFHHQLQHHHHLPTTVATTASTGNAVPSSNNGLFPPQPQPQHQPNDGSSSL 85

Query:    58 XXXXMVYPHSVASSAMTSTLEPAKKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQREL 117
                  VYPHSV SSA+T+ +EP K+KRGRPRKY TPEQALAAKK A+ ++S   +++REL
Sbjct:    86 A----VYPHSVPSSAVTAPMEPVKRKRGRPRKYVTPEQALAAKKLASSASSSSAKQRREL 141

Query:   118 HXXXXXXXXXXXXXXXXXXAPGKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQS 177
                                +  KSQLG +G  GQ FTPH++++A GEDV QKIM+F  QS
Sbjct:   142 ------AAVTGGTVSTNSGSSKKSQLGSVGKTGQCFTPHIVNIAPGEDVVQKIMMFANQS 195

Query:   178 KREICILSASGSISNASLRQPATSGGNITYE 208
             K E+C+LSASG+ISNASLRQPA SGGN+ YE
Sbjct:   196 KHELCVLSASGTISNASLRQPAPSGGNLPYE 226

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2051038 AT2G33620 [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 61/146 (41%), Positives = 74/146 (50%)

Query:    70 SSAMTST-LEPAKKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQRELHXXXXXXXXXX 128
             S  MT T  EP KK+RGRPRKYG P+             S G                  
Sbjct:    85 SGGMTGTGSEPVKKRRGRPRKYG-PDSG---------EMSLGLNPGAPSFTVSQPSSGGD 134

Query:   129 XXXXXXXXAPGKS----QLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICIL 184
                      PG S    +L  +G+ G GFTPHV++V AGEDV  KIM       R +C+L
Sbjct:   135 GGEKKRGRPPGSSSKRLKLQALGSTGIGFTPHVLTVLAGEDVSSKIMALTHNGPRAVCVL 194

Query:   185 SASGSISNASLRQPATSGGNITYELR 210
             SA+G+ISN +LRQ ATSGG +TYE R
Sbjct:   195 SANGAISNVTLRQSATSGGTVTYEGR 220

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2153142 AHL4 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
 Identities = 40/66 (60%), Positives = 46/66 (69%)

Query:   144 GGIGNL-GQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATSG 202
             GG   +    FTPHV++V AGEDV  KIM F QQ  R ICILSA+G ISN +LRQ  TSG
Sbjct:   168 GGPAEIVSPSFTPHVLTVNAGEDVTMKIMTFSQQGSRAICILSANGPISNVTLRQSMTSG 227

Query:   203 GNITYE 208
             G +TYE
Sbjct:   228 GTLTYE 233

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008283 "cell proliferation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2122684 AHL3 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 2.4e-19, P = 2.4e-19
 Identities = 62/154 (40%), Positives = 78/154 (50%)

Query:    65 PHSVASSAMTSTLEPAKKKRGRPRKY---GTPEQALAAK--KTAAYSNSKGKREQRELHX 119
             P S+      ++ E  KKKRGRPRKY   GT    L+     ++    S+    +R    
Sbjct:    70 PFSLTMPTENTSAEQLKKKRGRPRKYNPDGTLVVTLSPMPISSSVPLTSEFPPRKRGRGR 129

Query:   120 XXXXXXXXXXXXXXXXXAPGKSQLGGIGN---LGQGFTPHVISVAAGEDVGQKIMLFMQQ 176
                              +P  + L G+G    +G  FTPHV+ V AGEDV  KIM F QQ
Sbjct:   130 GKSNRWLKKSQMFQFDRSPVDTNLAGVGTADFVGANFTPHVLIVNAGEDVTMKIMTFSQQ 189

Query:   177 SKREICILSASGSISNASLRQPATSGGNITYELR 210
               R ICILSA+G ISN +LRQ  TSGG +TYE R
Sbjct:   190 GSRAICILSANGPISNVTLRQSMTSGGTLTYEGR 223

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2118091 AHL1 "AT-hook motif nuclear-localized protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 5.2e-19, Sum P(2) = 5.2e-19
 Identities = 36/63 (57%), Positives = 47/63 (74%)

Query:   148 NLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITY 207
             ++G  FTPH+I+V  GEDV  KI+ F QQ  R IC+LSA+G IS+ +LRQP +SGG +TY
Sbjct:   165 SVGGNFTPHIITVNTGEDVTMKIISFSQQGPRSICVLSANGVISSVTLRQPDSSGGTLTY 224

Query:   208 ELR 210
             E R
Sbjct:   225 EGR 227

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2178505 AT5G46640 [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 5.6e-18, P = 5.6e-18
 Identities = 57/137 (41%), Positives = 71/137 (51%)

Query:    81 KKKRGRPRKYGTPEQALA------AKKTAAYSNSKGKREQRELHXXXXXXXXXXXXXXXX 134
             KKKRGRPRKY TP+ ++A      +   +A SNS G+    +                  
Sbjct:   102 KKKRGRPRKY-TPDGSIALGLAPTSPLLSAASNSYGEGGVGDSGGNGNSVDPPVKRNRGR 160

Query:   135 XXAPGKSQLGGIGNL-GQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNA 193
                  K QL  +G   G GFTPHVI V  GED+  K+M F  Q  R ICILSASG++S  
Sbjct:   161 PPGSSKKQLDALGGTSGVGFTPHVIEVNTGEDIASKVMAFSDQGSRTICILSASGAVSRV 220

Query:   194 SLRQPATSGGNITYELR 210
              LRQ + S G +TYE R
Sbjct:   221 MLRQASHSSGIVTYEGR 237

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2126946 AT4G00200 [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 56/140 (40%), Positives = 73/140 (52%)

Query:    73 MTSTLEPA-KKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQRELHXXXXXXXXXXXXX 131
             M S+ E + KK+RGRPRKY      L +           KR + +L+             
Sbjct:    47 MPSSGEASGKKRRGRPRKYEANGAPLPSSSVPLVK----KRVRGKLNGFDMKKMHKTIGF 102

Query:   132 XXXXXAPGKSQLGGIGN-LGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSI 190
                    G    GG+G  +G  FTPHVI+V  GED+  +I+ F QQ  R ICILSA+G I
Sbjct:   103 HSSGERFGVG--GGVGGGVGSNFTPHVITVNTGEDITMRIISFSQQGPRAICILSANGVI 160

Query:   191 SNASLRQPATSGGNITYELR 210
             SN +LRQP + GG +TYE R
Sbjct:   161 SNVTLRQPDSCGGTLTYEGR 180

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2141045 AT4G17950 [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
 Identities = 38/75 (50%), Positives = 46/75 (61%)

Query:   139 GKSQLGGIGNLGQ-GFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQ 197
             GK QL  +G  G  GFTPHVI V  GED+  KI+ F  Q  R ICILSA+G+++N  LRQ
Sbjct:   206 GKKQLDALGGTGGVGFTPHVIEVKTGEDIATKILAFTNQGPRAICILSATGAVTNVMLRQ 265

Query:   198 PATSG--GNITYELR 210
                S   G + YE R
Sbjct:   266 ANNSNPTGTVKYEGR 280

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2132599 AT4G22770 [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
 Identities = 32/58 (55%), Positives = 44/58 (75%)

Query:   153 FTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITYELR 210
             FTPH+I+V AGEDV ++I+ F QQ    IC+L A+G +S+ +LRQP +SGG +TYE R
Sbjct:   150 FTPHIITVNAGEDVTKRIISFSQQGSLAICVLCANGVVSSVTLRQPDSSGGTLTYEGR 207

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2050766 AT2G45850 [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 2.2e-16, P = 2.2e-16
 Identities = 49/132 (37%), Positives = 64/132 (48%)

Query:    79 PAKKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQRELHXXXXXXXXXXXXXXXXXXAP 138
             P K+KRGRPRKYG       A  +++ S        +                      P
Sbjct:    96 PMKRKRGRPRKYGQDGSVSLALSSSSVSTITPNNSNKRGRGRPPGSGKKQRMASVGELMP 155

Query:   139 GKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQP 198
               S        G  FTPHVI+V+ GED+  K++ F QQ  R IC+LSASG++S A+L QP
Sbjct:   156 SSS--------GMSFTPHVIAVSIGEDIASKVIAFSQQGPRAICVLSASGAVSTATLIQP 207

Query:   199 ATSGGNITYELR 210
             + S G I YE R
Sbjct:   208 SASPGAIKYEGR 219

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	239
pfam03479	120	pfam03479, DUF296, Domain of unknown function (DUF	1e-13
cd11378	113	cd11378, DUF296, Domain of unknown function found	2e-09

>gnl|CDD|217587 pfam03479, DUF296, Domain of unknown function (DUF296)

 Score = 64.9 bits (159), Expect = 1e-13
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 153 FTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQP---ATSGGNITYE 208
             PHV+ +  GED+ + +  F +Q      +LS  G++SN +LRQP   A S G +T E
Sbjct: 1   GRPHVLRLEPGEDLVESLEAFARQRGIGAAVLSGIGAVSNVTLRQPDEEAKSYGVVTLE 59

This putative domain is found in proteins that contain AT-hook motifs pfam02178, which strongly suggests a DNA-binding function for the proteins as a whole. There are three highly conserved histidine residues, eg at 117, 119 and 133 in Reut_B5223, which should be a structurally conserved metal-binding unit, based on structural comparison with known metal-binding structures. The proteins should work as trimers. Length = 120

>gnl|CDD|211390 cd11378, DUF296, Domain of unknown function found in archaea, bacteria, and plants

 Score = 53.4 bits (129), Expect = 2e-09
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 154 TPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPAT---SGGNITYE 208
            P V+ +  GED+ + +  F ++   +  +LS  G++SNA+LR P         +T+E
Sbjct: 1   RPFVLRLEPGEDLVESLEAFAREEGIKAAVLSGIGAVSNATLRYPDPEPKEYETVTFE 58

This domain is found in proteins that contain AT-hook motifs, which suggests a role in DNA-binding for the proteins as a whole. Three conserved histidine residues appear to form a zinc-binding site, and the domain has been observed to form homotrimers. It co-occurs with a thioredoxin-like domain in uncharacterized cyanobacterial proteins. Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	239
PF03479	120	DUF296: Domain of unknown function (DUF296); Inter	99.68
COG1661	141	Predicted DNA-binding protein with PD1-like DNA-bi	99.32
PF02178	13	AT_hook: AT hook motif; InterPro: IPR017956 AT hoo	96.43
smart00384	26	AT_hook DNA binding domain with preference for A/T	96.35
PF14621	219	RFX5_DNA_bdg: RFX5 DNA-binding domain	86.28
PF13546	273	DDE_5: DDE superfamily endonuclease	81.66

>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown

Probab=99.68  E-value=6.7e-17  Score=129.15  Aligned_cols=70  Identities=20%  Similarity=0.177  Sum_probs=64.4

Q ss_pred             ceeEEEEEcCCCchHHHHHHHHHhcCceeEEEeccCeeeeEEEeCCC--CCCCceeEEeeeeeEEeeecccc
Q 026405          153 FTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPA--TSGGNITYELRAGPQGVWETVDG  222 (239)
Q Consensus       153 ftpHVIrV~pGEDV~~kI~~Faqq~~rAicILSa~GsVSnVTLRqp~--ssg~tvtyeGrFEILSLsGTl~~  222 (239)
                      |++|+|||++||||+++|++||+++++..|+|+++|+|++|+|++++  ..+..++|+|+|||+||+|||..
T Consensus         1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~   72 (120)
T PF03479_consen    1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISP   72 (120)
T ss_dssp             EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEE
T ss_pred             CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEEC
Confidence            78999999999999999999999999888889999999999999983  34678899999999999999986

Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.

>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

Probab=99.32  E-value=4.3e-12  Score=106.46  Aligned_cols=74  Identities=15%  Similarity=0.122  Sum_probs=67.5

Q ss_pred             CCceeEEEEEcCCCchHHHHHHHHHhcCceeEEEeccCeeeeEEEeCCCCC---CCceeEEeeeeeEEeeecccccc
Q 026405          151 QGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATS---GGNITYELRAGPQGVWETVDGVM  224 (239)
Q Consensus       151 ~~ftpHVIrV~pGEDV~~kI~~Faqq~~rAicILSa~GsVSnVTLRqp~ss---g~tvtyeGrFEILSLsGTl~~~~  224 (239)
                      ..-+-+++||++|||+.+.|.+||+++....+|++|+|++++++||..+..   +..+.+.++||||||.|+|..+.
T Consensus         7 ~~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~   83 (141)
T COG1661           7 SSGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD   83 (141)
T ss_pred             ccceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC
Confidence            344678999999999999999999999977799999999999999999843   67899999999999999998877

>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions

Probab=96.43  E-value=0.0011  Score=35.73  Aligned_cols=12  Identities=67%  Similarity=1.104  Sum_probs=4.6

Q ss_pred             cccCCCCCCCCC
Q 026405           81 KKKRGRPRKYGT   92 (239)
Q Consensus        81 KkKRGRPRKYg~   92 (239)
                      +|+||||+|+..
T Consensus         1 ~r~RGRP~k~~~   12 (13)
T PF02178_consen    1 KRKRGRPRKNAK   12 (13)
T ss_dssp             S--SS--TT---
T ss_pred             CCcCCCCccccC
Confidence            689999999863

These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.

>smart00384 AT_hook DNA binding domain with preference for A/T rich regions

Probab=96.35  E-value=0.0018  Score=40.84  Aligned_cols=14  Identities=57%  Similarity=0.873  Sum_probs=11.9

Q ss_pred             cccCCCCCCCCCCC
Q 026405           81 KKKRGRPRKYGTPE   94 (239)
Q Consensus        81 KkKRGRPRKYg~~~   94 (239)
                      |||||||||+..+.
T Consensus         1 kRkRGRPrK~~~~~   14 (26)
T smart00384        1 KRKRGRPRKAPKDX   14 (26)
T ss_pred             CCCCCCCCCCCCcc
Confidence            69999999997554

Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).

>PF14621 RFX5_DNA_bdg: RFX5 DNA-binding domain

Probab=86.28  E-value=0.26  Score=44.12  Aligned_cols=12  Identities=75%  Similarity=1.115  Sum_probs=10.6

Q ss_pred             cccccCCCCCCC
Q 026405           79 PAKKKRGRPRKY   90 (239)
Q Consensus        79 ~~KkKRGRPRKY   90 (239)
                      -.|||||||||-
T Consensus        66 dAKRKRGRPRKK   77 (219)
T PF14621_consen   66 DAKRKRGRPRKK   77 (219)
T ss_pred             hhhhhcCCCccC
Confidence            579999999976

>PF13546 DDE_5: DDE superfamily endonuclease

Probab=81.66  E-value=0.79  Score=40.48  Aligned_cols=15  Identities=67%  Similarity=1.223  Sum_probs=11.3

Q ss_pred             ccccccCCCCCCCCC
Q 026405           78 EPAKKKRGRPRKYGT   92 (239)
Q Consensus        78 ~~~KkKRGRPRKYg~   92 (239)
                      .+..+|||||||||.
T Consensus       228 ~~~~~~rGRPr~~g~  242 (273)
T PF13546_consen  228 PPPPPKRGRPRKYGR  242 (273)
T ss_pred             cccCCCCCCCCCCCC
Confidence            344556999999994

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	239
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	3e-09
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	2e-07
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	3e-06

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A Length = 154

 Score = 53.2 bits (127), Expect = 3e-09
 Identities = 11/54 (20%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 150 GQGFTPHVISVAAGEDVGQKIMLFMQQSK-REICILSASGSISNASLRQPATSG 202
                 + + +  G++V  ++  F+QQ++ R   I   +GS+++ +LR      
Sbjct: 15  ASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA 68

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae} Length = 142

 Score = 48.4 bits (115), Expect = 2e-07
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 155 PHVISVAAGEDVGQKIMLFMQQSK-REICILSASGSISNASLRQPATSG 202
              + +  G D+ Q+I+  +QQ +     I S  G +S   +R   +  
Sbjct: 4   LIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS 52

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii} Length = 143

 Score = 45.0 bits (106), Expect = 3e-06
 Identities = 10/68 (14%), Positives = 23/68 (33%)

Query: 149 LGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITYE 208
           +      ++  V  GE++   I  F ++   E  I++  G++ N  +             
Sbjct: 5   MFSLGRTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVI 64

Query: 209 LRAGPQGV 216
              G   +
Sbjct: 65  PLKGSYEL 72

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	239
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	99.71
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	99.7
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	99.61
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	99.59
3htn_A	149	Putative DNA binding protein; DUF269 family protei	99.58
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	99.28

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}

Probab=99.71  E-value=2.8e-17  Score=133.94  Aligned_cols=71  Identities=17%  Similarity=0.167  Sum_probs=66.9

Q ss_pred             CceeEEEEEcCCCchHHHHHHHHHhcC-ceeEEEeccCeeeeEEEeCCCCCCCceeEEeeeeeEEeeeccccc
Q 026405          152 GFTPHVISVAAGEDVGQKIMLFMQQSK-REICILSASGSISNASLRQPATSGGNITYELRAGPQGVWETVDGV  223 (239)
Q Consensus       152 ~ftpHVIrV~pGEDV~~kI~~Faqq~~-rAicILSa~GsVSnVTLRqp~ssg~tvtyeGrFEILSLsGTl~~~  223 (239)
                      +|++|+|||.+||||+++|.+||++++ ++.||++++|+|++|+||+++.. ..++++|+|||+||+|||.++
T Consensus         1 ~~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~-~~~~~~g~~EIlsl~Gti~~~   72 (142)
T 2p6y_A            1 MIHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSV-STLQVSAPFEILSLSGTLTYQ   72 (142)
T ss_dssp             CCEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSS-CEEEECSCEEEEEEEEEECSS
T ss_pred             CCcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCC-ccEecCCcEEEEEeEEEEeCC
Confidence            479999999999999999999999998 68999999999999999999986 578899999999999999885

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A

Probab=99.70  E-value=5.3e-17  Score=134.03  Aligned_cols=75  Identities=16%  Similarity=0.197  Sum_probs=69.9

Q ss_pred             CCCCCceeEEEEEcCCCchHHHHHHHHHhcC-ceeEEEeccCeeeeEEEeCCCCCCCceeEEeeeeeEEeeeccccc
Q 026405          148 NLGQGFTPHVISVAAGEDVGQKIMLFMQQSK-REICILSASGSISNASLRQPATSGGNITYELRAGPQGVWETVDGV  223 (239)
Q Consensus       148 ~~g~~ftpHVIrV~pGEDV~~kI~~Faqq~~-rAicILSa~GsVSnVTLRqp~ssg~tvtyeGrFEILSLsGTl~~~  223 (239)
                      +....+++|+|||.+||||+++|.+||++++ ++.|||+++|+|++|+||+++.. .+++|+|+||||||+|||..+
T Consensus        13 ~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~-~~~~~~g~~EIlsl~Gti~~~   88 (154)
T 2hx0_A           13 HNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQE-ATTSLTGTFEVISLNGTLELT   88 (154)
T ss_dssp             CSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCS-SCEEEEEEEEEEEEEEEEETT
T ss_pred             CCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCC-ccEecCCcEEEEEeeeeEeCC
Confidence            4567889999999999999999999999988 69999999999999999999986 478999999999999999885

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}

Probab=99.61  E-value=5.5e-16  Score=125.87  Aligned_cols=70  Identities=16%  Similarity=0.107  Sum_probs=63.2

Q ss_pred             eeEEEEEcCCCchHHHHHHHHHhcCceeEEEeccCeeeeEEEeCCCCC---CCceeEEeeeeeEEeeeccccc
Q 026405          154 TPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATS---GGNITYELRAGPQGVWETVDGV  223 (239)
Q Consensus       154 tpHVIrV~pGEDV~~kI~~Faqq~~rAicILSa~GsVSnVTLRqp~ss---g~tvtyeGrFEILSLsGTl~~~  223 (239)
                      ++|+|||.+||||+++|.+||+++++..|+|+++|+|++|+||+++..   +..++++|+|||+||+|||...
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~   82 (143)
T 2dt4_A           10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLK   82 (143)
T ss_dssp             EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEE
T ss_pred             CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECC
Confidence            699999999999999999999999966666699999999999998765   3468999999999999999874

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3

Probab=99.59  E-value=1.2e-15  Score=124.32  Aligned_cols=70  Identities=13%  Similarity=0.088  Sum_probs=62.5

Q ss_pred             eeEEEEEcCCCchHHHHHHHHHhcCceeEEEeccCeeeeEEEeCCCCCC---CceeEEeeeeeEEeeeccccc
Q 026405          154 TPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATSG---GNITYELRAGPQGVWETVDGV  223 (239)
Q Consensus       154 tpHVIrV~pGEDV~~kI~~Faqq~~rAicILSa~GsVSnVTLRqp~ssg---~tvtyeGrFEILSLsGTl~~~  223 (239)
                      ++|+|||.+||||+++|.+||++++...|+|+++|+|++|+||+++...   ..++++|+||||||+|||...
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~   82 (146)
T 2h6l_A           10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMK   82 (146)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEE
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECC
Confidence            5899999999999999999999999554445999999999999998763   478999999999999999874

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0

Probab=99.58  E-value=1e-15  Score=125.70  Aligned_cols=70  Identities=10%  Similarity=0.138  Sum_probs=63.7

Q ss_pred             eeEEEEEcCCCchHHHHHHHHHhcCceeEEEeccCeeeeEEEeCCCCC---CCceeEEeeeeeEEeeeccccc
Q 026405          154 TPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATS---GGNITYELRAGPQGVWETVDGV  223 (239)
Q Consensus       154 tpHVIrV~pGEDV~~kI~~Faqq~~rAicILSa~GsVSnVTLRqp~ss---g~tvtyeGrFEILSLsGTl~~~  223 (239)
                      +.++|||.+||||+++|.+||++++...|+++++|+|++|+||+++..   +..++++|+|||+||+|||...
T Consensus        16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~   88 (149)
T 3htn_A           16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSM   88 (149)
T ss_dssp             TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEcc
Confidence            789999999999999999999999977777799999999999998764   3478999999999999999874

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}

Probab=99.28  E-value=5.1e-12  Score=103.37  Aligned_cols=68  Identities=13%  Similarity=0.090  Sum_probs=59.9

Q ss_pred             eeEEEEEcCCCchHHHHHHHHHhcCceeEEEeccCeeeeEEEeCCCCC---CCceeEEeeeeeEEeeecccc
Q 026405          154 TPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATS---GGNITYELRAGPQGVWETVDG  222 (239)
Q Consensus       154 tpHVIrV~pGEDV~~kI~~Faqq~~rAicILSa~GsVSnVTLRqp~ss---g~tvtyeGrFEILSLsGTl~~  222 (239)
                      +-+++||.+||||+++|.+||++++...++++++|++++|+|+.++..   +...+++ ++||+||+|||+.
T Consensus        13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~   83 (147)
T 3hwu_A           13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAW   83 (147)
T ss_dssp             TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEc
Confidence            348999999999999999999999976667799999999999987754   3457788 8999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	239
d2h6la1	138	d.290.1.3 (A:1-138) Hypothetical protein AF0104 {A	4e-06
d2hx0a1	136	d.290.1.3 (A:6-141) Hypothetical protein STM3071 {	4e-05

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 138

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 43.0 bits (101), Expect = 4e-06
 Identities = 12/84 (14%), Positives = 31/84 (36%), Gaps = 3/84 (3%)

Query: 156 HVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITYELRAGPQG 215
            ++ +  G+D+ ++I  F+++       +SA G++ +A +            +    P  
Sbjct: 12  FLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEP-- 69

Query: 216 VWETVDGVMSQRRLSTTYDEHGSV 239
             E +    +     +    H  V
Sbjct: 70  -LEILSLSGNVSMKDSKPFCHIHV 92

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]} Length = 136

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

 Score = 40.3 bits (94), Expect = 4e-05
 Identities = 11/48 (22%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 156 HVISVAAGEDVGQKIMLFMQQSK-REICILSASGSISNASLRQPATSG 202
           + + +  G++V  ++  F+QQ++ R   I   +GS+++ +LR      
Sbjct: 9   YALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA 56

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	239
d2hx0a1	136	Hypothetical protein STM3071 {Salmonella typhimuri	99.61
d2h6la1	138	Hypothetical protein AF0104 {Archaeoglobus fulgidu	99.47

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.61  E-value=1.1e-15  Score=121.85  Aligned_cols=76  Identities=16%  Similarity=0.175  Sum_probs=69.9

Q ss_pred             CCCCceeEEEEEcCCCchHHHHHHHHHhcC-ceeEEEeccCeeeeEEEeCCCCCCCceeEEeeeeeEEeeeccccccc
Q 026405          149 LGQGFTPHVISVAAGEDVGQKIMLFMQQSK-REICILSASGSISNASLRQPATSGGNITYELRAGPQGVWETVDGVMS  225 (239)
Q Consensus       149 ~g~~ftpHVIrV~pGEDV~~kI~~Faqq~~-rAicILSa~GsVSnVTLRqp~ssg~tvtyeGrFEILSLsGTl~~~~~  225 (239)
                      .++..+.+++||++||||+++|.+||++++ ++.||++++|++++|+|++++.. ....++|+|||+||+|||....+
T Consensus         2 ~~~~~R~~~lrl~~Gedl~~~i~~~~~~~~I~~a~V~~~iGs~~~~~~~~~~~~-~~~~~~g~~Ei~sl~G~I~~~~~   78 (136)
T d2hx0a1           2 NASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQE-ATTSLTGTFEVISLNGTLELTGE   78 (136)
T ss_dssp             SCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCS-SCEEEEEEEEEEEEEEEEETTEE
T ss_pred             CCCCCcEEEEEECCCChHHHHHHHHHHHhCCCEEEEEEEeeeeEEEEEEeCCCC-CcEEecCcEEEEEEEEEeccCCC
Confidence            467789999999999999999999999999 79999999999999999999875 67889999999999999987653

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.47  E-value=2e-14  Score=113.73  Aligned_cols=69  Identities=13%  Similarity=0.083  Sum_probs=63.2

Q ss_pred             eeEEEEEcCCCchHHHHHHHHHhcCceeEEEeccCeeeeEEEeCCCCC---CCceeEEeeeeeEEeeecccc
Q 026405          154 TPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATS---GGNITYELRAGPQGVWETVDG  222 (239)
Q Consensus       154 tpHVIrV~pGEDV~~kI~~Faqq~~rAicILSa~GsVSnVTLRqp~ss---g~tvtyeGrFEILSLsGTl~~  222 (239)
                      +.++|+|++||||+++|.+||+++++..|+++++|++++|+||+++..   +..+.++|+|||+||+|+|..
T Consensus        10 r~~~~rl~~Gedl~~~l~~~~~~~~i~~a~is~iG~~~~~~l~~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~   81 (138)
T d2h6la1          10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSM   81 (138)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEeecccceEEEecCCCCccceEecCCCEEEEEeEEEEEc
Confidence            679999999999999999999999988899999999999999986554   557899999999999999964