Citrus Sinensis ID: 026412

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MERYQIWLALGTLTLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTFT
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHccccccEEcccccHHHHHcccccEEEEEEccccHHHcccHHHHHHHHHHcccccccEEEEccccccHHHHHHcccccccEEEEccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccHHcHHHHHHHHHcccccHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHcccccccEEEEccccHHHHHcccccEEEEEEcccccccEEEcccccEEEEccccccEEEEEEEEHHHHHHHHcHcccccccEEEEEcccccccccccccccHHHHHHHHHHHcccccEEcccHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHHHHccccccHHHHcHHHHHHHHcccccEEccccccccccccccccHHHHHHHHHHHccHHHcc
Coil and Loop (DISEMBL)
MERYQIWLALGTLTLFFVSALADDVvvltednfekevgqdrgalvefyapwcghcknlaPTYEKVAAAFTLEDDVVVANLDADKYKDLAekygvsgfptlkffpkgnkdgeeygggrdlEDFVSFInekcgtsrdgkgqltsTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEvlegstarhGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKknilstft
Flexible Loop (DISEMBL)
MERYQIWLALGTLTLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAekygvsgfptlkffpkgnKDGEEYGGGRDLEDFVSFINEKcgtsrdgkgqlTSTAGIVASLDALVKEFVAASGDEKKAVFSKIErgvevlegstarhgkiyLKVAKNYMDKGSDYAKKEIDRLQRMLDKsisaakadefvlkknilstft
Low Complexity Region (SEG)
MERYQIWLALGTLTLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTFT
Disordered region (IsUnstruct)
***YQIWLALGTLTLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK**EEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYA**********************FVL*********
Disordered Region (DISOPRED)
***YQIWLALGTLTLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN*****************GIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTFT
Disordered Region (DISEMBL)
MERYQIWLALGTLTLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTFT
Disordered Region (DISPRO)
MERYQIWLALGTLTLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTFT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MERYQIWLALGTLTLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTFT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	239	2.2.26 [Sep-21-2011]
P38661	364	Probable protein disulfid	N/A	no	0.920	0.604	0.721	8e-87
O22263	361	Protein disulfide-isomera	yes	no	0.924	0.612	0.698	7e-84
Q942L2	371	Protein disulfide isomera	yes	no	0.928	0.598	0.645	2e-82
Q75M08	366	Protein disulfide isomera	no	no	0.928	0.606	0.645	8e-80
Q86IA3	363	Protein disulfide-isomera	yes	no	0.899	0.592	0.431	3e-44
Q92249	369	Protein disulfide-isomera	N/A	no	0.887	0.574	0.405	1e-38
Q00216	359	Protein disulfide-isomera	yes	no	0.853	0.568	0.419	9e-38
O13811	359	Protein disulfide-isomera	yes	no	0.899	0.598	0.414	4e-37
P21195	509	Protein disulfide-isomera	yes	no	0.464	0.218	0.451	5e-23
P80284	513	Protein disulfide-isomera	N/A	no	0.456	0.212	0.491	7e-23

>sp|P38661|PDIA6_MEDSA Probable protein disulfide-isomerase A6 OS=Medicago sativa PE=2 SV=1

 Score =  320 bits (819), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 161/223 (72%), Positives = 185/223 (82%), Gaps = 3/223 (1%)

Query: 18  VSALADDVVVLTEDNFEKEVGQD--RGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDV 75
           ++     VVVLT + F  EV  D  +  LVEFYAPWCGHCK+LAP YEKVAA F  EDDV
Sbjct: 142 IATAPSHVVVLTPETF-NEVVLDGTKDVLVEFYAPWCGHCKSLAPIYEKVAAVFKSEDDV 200

Query: 76  VVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRD 135
           V+ANLDADKY+DLAEKY VSGFPTLKFFPKGNK GE+YGGGRDL+DFV+FINEK GTSRD
Sbjct: 201 VIANLDADKYRDLAEKYDVSGFPTLKFFPKGNKAGEDYGGGRDLDDFVAFINEKSGTSRD 260

Query: 136 GKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAK 195
            KGQLTS AGIV  LD LVKEFVAA+ +EKKAVF++IE  V+ LEGS +R+GKIYLKV+K
Sbjct: 261 AKGQLTSEAGIVEDLDELVKEFVAANDEEKKAVFARIEEEVKKLEGSASRYGKIYLKVSK 320

Query: 196 NYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 238
            Y++KGSDYAK EI RL+R+L+KSIS AKADE  LKKNILST+
Sbjct: 321 KYLEKGSDYAKNEIQRLERLLEKSISPAKADELTLKKNILSTY 363

Medicago sativa (taxid: 3879)
EC: 5EC: .EC: 3EC: .EC: 4EC: .EC: 1

>sp|O22263|PDI21_ARATH Protein disulfide-isomerase like 2-1 OS=Arabidopsis thaliana GN=PDIL2-1 PE=1 SV=1

 Score =  310 bits (793), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 155/222 (69%), Positives = 181/222 (81%), Gaps = 1/222 (0%)

Query: 18  VSALADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVV 76
           ++A+  +VVVLT DNF++ V  Q++  LVEFYAPWCGHCK+LAPTYEKVA  F  E+ VV
Sbjct: 136 LAAVPQNVVVLTPDNFDEIVLDQNKDVLVEFYAPWCGHCKSLAPTYEKVATVFKQEEGVV 195

Query: 77  VANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDG 136
           +ANLDAD +K L EKYGVSGFPTLKFFPK NK G +Y GGRDL+DFVSFINEK GTSRD 
Sbjct: 196 IANLDADAHKALGEKYGVSGFPTLKFFPKDNKAGHDYDGGRDLDDFVSFINEKSGTSRDS 255

Query: 137 KGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKN 196
           KGQLTS AGIV SLDALVKE VAAS DEKKAV S+IE     L+GST R+GK+YLK+AK+
Sbjct: 256 KGQLTSKAGIVESLDALVKELVAASEDEKKAVLSRIEEEASTLKGSTTRYGKLYLKLAKS 315

Query: 197 YMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 238
           Y++KGSDYA KE +RL R+L KSIS  KADE  LK+NIL+TF
Sbjct: 316 YIEKGSDYASKETERLGRVLGKSISPVKADELTLKRNILTTF 357

Protein disulfide isomerase that may be required for proper pollen development, ovule fertilization and embryo development.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q942L2|PDI22_ORYSJ Protein disulfide isomerase-like 2-2 OS=Oryza sativa subsp. japonica GN=PDIL2-2 PE=2 SV=1

 Score =  305 bits (781), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 144/223 (64%), Positives = 182/223 (81%), Gaps = 1/223 (0%)

Query: 18  VSALADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVV 76
           ++ +   VVVL  DNF+  V  +++  LVEFYAPWCGHCK+LAP YEK+A+ + L+D VV
Sbjct: 148 LATIPSSVVVLGPDNFDSIVLDENKDILVEFYAPWCGHCKHLAPIYEKLASVYKLDDGVV 207

Query: 77  VANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDG 136
           +ANLDADK+KDLAEKYGVSG+PTLKFFPKGNK GE+Y GGR+L+DFV FINEKCGTSRD 
Sbjct: 208 IANLDADKHKDLAEKYGVSGYPTLKFFPKGNKAGEDYDGGRELDDFVKFINEKCGTSRDT 267

Query: 137 KGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKN 196
           KGQLTS AG +ASLDAL KEF+ A+ D++K + S +E  V  L GS A+HGK+Y+ +AK 
Sbjct: 268 KGQLTSEAGRIASLDALAKEFLGAANDKRKEILSNMEEEVVKLSGSAAKHGKVYIAIAKK 327

Query: 197 YMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTFT 239
            +DKG DY KKE +RL+RML+KSIS +KADEF++KKN+LSTF+
Sbjct: 328 ILDKGHDYTKKETERLERMLEKSISPSKADEFIIKKNVLSTFS 370

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q75M08|PDI21_ORYSJ Protein disulfide isomerase-like 2-1 OS=Oryza sativa subsp. japonica GN=PDIL2-1 PE=2 SV=2

 Score =  296 bits (758), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 144/223 (64%), Positives = 177/223 (79%), Gaps = 1/223 (0%)

Query: 18  VSALADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVV 76
           ++A+   VVVLT + F+  V  + +  LVEFYAPWCGHCK+LAP YEK+A+ +  ++ VV
Sbjct: 143 IAAVPSSVVVLTPETFDSVVLDETKDVLVEFYAPWCGHCKHLAPIYEKLASVYKQDEGVV 202

Query: 77  VANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDG 136
           +ANLDADK+  LAEKYGVSGFPTLKFFPKGNK GE+Y GGR+L+DFV FINEKCGTSRD 
Sbjct: 203 IANLDADKHTALAEKYGVSGFPTLKFFPKGNKAGEDYDGGRELDDFVKFINEKCGTSRDS 262

Query: 137 KGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKN 196
           KGQLTS AGIV SL  LVKEF+ A+ D++K   SK+E  V  L G  A++GKIY+  AK 
Sbjct: 263 KGQLTSEAGIVESLAPLVKEFLGAANDKRKEALSKMEEDVAKLTGPAAKYGKIYVNSAKK 322

Query: 197 YMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTFT 239
            M+KGS+Y KKE +RLQRML+KSIS +KADEFV+KKNILSTF+
Sbjct: 323 IMEKGSEYTKKESERLQRMLEKSISPSKADEFVIKKNILSTFS 365

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q86IA3|PDI1_DICDI Protein disulfide-isomerase 1 OS=Dictyostelium discoideum GN=pdi1 PE=1 SV=2

 Score =  178 bits (452), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 94/218 (43%), Positives = 133/218 (61%), Gaps = 3/218 (1%)

Query: 24  DVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 82
           +VV L+  NF+  V  + +  LVEFYAPWCGHCK L P YE +   +  E DVV+A +D 
Sbjct: 143 NVVDLSPSNFDSVVLDKSKNVLVEFYAPWCGHCKKLMPDYEILGNTYANEKDVVIAKIDC 202

Query: 83  DK--YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQL 140
           D    K +  KYGV+GFPTLK+F K +KDGE+Y  GRDL+ F+++IN++ G +R   G+L
Sbjct: 203 DAADNKAICSKYGVTGFPTLKWFGKQSKDGEKYEQGRDLDTFINYINKQAGVNRVKGGKL 262

Query: 141 TSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDK 200
              AG V  LD +  EF+AA+ + +K +  K +  V+ L       G  Y+KV K   +K
Sbjct: 263 AVGAGRVEQLDTIATEFIAAAAEVRKELVKKAQTVVDSLPEELRTEGSYYVKVMKTIAEK 322

Query: 201 GSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 238
             D+   EI R+ +++  S+S  KADEF  K NIL +F
Sbjct: 323 SIDFVTTEIARITKLVSGSMSGKKADEFAKKLNILESF 360

Participates in the folding of proteins containing disulfide bonds, may be involved in glycosylation, prolyl hydroxylation and triglyceride transfer.

Dictyostelium discoideum (taxid: 44689)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q92249|ERP38_NEUCR Protein disulfide-isomerase erp38 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=erp38 PE=2 SV=2

 Score =  159 bits (402), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 88/217 (40%), Positives = 126/217 (58%), Gaps = 5/217 (2%)

Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
           V +L +   +  +G D+  LV F APWCGHCKNLAPT+EK+AA F  + ++ +A +DAD 
Sbjct: 143 VNILNDATIKGAIGGDKNVLVAFTAPWCGHCKNLAPTWEKLAATFASDPEITIAKVDADA 202

Query: 85  Y--KDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTS 142
              K  A +YGVSGFPT+KFFPKG+   E+Y GGR   D V F+NEK GT R   G L +
Sbjct: 203 PTGKKSAAEYGVSGFPTIKFFPKGSTTPEDYNGGRSEADLVKFLNEKAGTHRTPGGGLDT 262

Query: 143 TAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGS 202
            AG +A+LD +V ++   +    +      E    +   +  ++   YL+V  + + K  
Sbjct: 263 VAGTIAALDEIVAKYTGGA-SLAEVAEEAKEAVKSLKNSAELKYADYYLRVL-DKLSKSE 320

Query: 203 DYAKKEIDRLQRMLDK-SISAAKADEFVLKKNILSTF 238
            YA KE  RL+ +L K  ++ AK DE  +K N+L  F
Sbjct: 321 GYATKEFARLEGILKKGGLAPAKVDELTVKVNVLRKF 357

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q00216|TIGA_ASPNG Protein disulfide-isomerase tigA OS=Aspergillus niger GN=tigA PE=2 SV=1

 Score =  156 bits (395), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 91/217 (41%), Positives = 131/217 (60%), Gaps = 13/217 (5%)

Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
           V +L +  F+  VG D   LV F APWCGHCKNLAPT+E +A  F LE +VV+A +DAD 
Sbjct: 142 VEMLNDATFKGAVGGDNDVLVAFTAPWCGHCKNLAPTWEALANDFVLEPNVVIAKVDADA 201

Query: 85  Y--KDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTS 142
              K  A + GVSG+PT+KFFPKG+ +   Y G R  + F+ F+NEK GT R   G L +
Sbjct: 202 ENGKATAREQGVSGYPTIKFFPKGSTESVPYEGARSEQAFIDFLNEKTGTHRTVGGGLDT 261

Query: 143 TAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGS 202
            AG +ASLD L+    AA       + + +++    L+   A++   Y+KVA + + + +
Sbjct: 262 KAGTIASLDELIASTSAAD------LAAAVKKAATELKDKYAQY---YVKVA-DKLSQNA 311

Query: 203 DYAKKEIDRLQRMLDKSISAA-KADEFVLKKNILSTF 238
           +YA KE+ RL+++L K  SA  K D+ + + NIL  F
Sbjct: 312 EYAAKELARLEKILAKGGSAPEKVDDLISRSNILRKF 348

Aspergillus niger (taxid: 5061)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|O13811|PDI2_SCHPO Protein disulfide-isomerase C17H9.14c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17H9.14c PE=3 SV=1

 Score =  154 bits (390), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 92/222 (41%), Positives = 130/222 (58%), Gaps = 7/222 (3%)

Query: 20  ALADDVVVLTEDNFEKEVGQDR-GALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA 78
            L  +VV L   NF+K V  D+   LVEFYA WCG+CK LAPTYE +   F  E +V + 
Sbjct: 137 VLPSNVVELDSLNFDKVVMDDKKDVLVEFYADWCGYCKRLAPTYETLGKVFKNEPNVEIV 196

Query: 79  NLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEE-YGGGRDLEDFVSFINEKCGTSRDGK 137
            ++AD + D+   + V+ FPT+KFFPK +KD  E Y G R LE  + +IN+K GT R   
Sbjct: 197 KINADVFADIGRLHEVASFPTIKFFPKDDKDKPELYEGDRSLESLIEYINKKSGTQRSPD 256

Query: 138 GQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNY 197
           G L STAG + + D    EF+  S   K+ V  K+++    LE S+ R  K Y KV +  
Sbjct: 257 GTLLSTAGRIPTFDEFAAEFLDMSNAAKEVVLEKVKQL--ALEDSS-RWTKYYKKVFEKI 313

Query: 198 MDKGSDYAKKEIDRLQRML-DKSISAAKADEFVLKKNILSTF 238
           ++   ++  KE  RL ++L  KSI+ A AD+F  + NIL++F
Sbjct: 314 LN-DENWVHKEAKRLSKLLRQKSIALASADDFKTRLNILNSF 354

Participates in the folding of proteins containing disulfide bonds, may be involved in glycosylation, prolyl hydroxylation and triglyceride transfer.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|P21195|PDIA1_RABIT Protein disulfide-isomerase OS=Oryctolagus cuniculus GN=P4HB PE=2 SV=1

 Score =  108 bits (269), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 74/113 (65%), Gaps = 2/113 (1%)

Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLD 81
           D+V+VL   NF +E+   +  LVEFYAPWCGHCK LAP Y K A     E  D+ +A +D
Sbjct: 25  DNVLVLKSSNFAEELAAHKHLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSDIRLAKVD 84

Query: 82  ADKYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINEKCGTS 133
           A +  DLA++YGV G+PT+KFF  G+    +EY  GR+ +D V+++ ++ G +
Sbjct: 85  ATEESDLAQQYGVRGYPTIKFFKNGDTASPKEYTAGREADDIVNWLKKRTGPA 137

This multifunctional protein catalyzes the formation, breakage and rearrangement of disulfide bonds. At the cell surface, seems to act as a reductase that cleaves disulfide bonds of proteins attached to the cell. May therefore cause structural modifications of exofacial proteins. Inside the cell, seems to form/rearrange disulfide bonds of nascent proteins. At high concentrations, functions as a chaperone that inhibits aggregation of misfolded proteins. At low concentrations, facilitates aggregation (anti-chaperone activity). May be involved with other chaperones in the structural modification of the TG precursor in hormone biogenesis. Also acts a structural subunit of various enzymes such as prolyl 4-hydroxylase and microsomal triacylglycerol transfer protein MTTP.

Oryctolagus cuniculus (taxid: 9986)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|P80284|PDI_HORVU Protein disulfide-isomerase OS=Hordeum vulgare GN=PDI PE=1 SV=2

 Score =  107 bits (267), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 55/112 (49%), Positives = 71/112 (63%), Gaps = 3/112 (2%)

Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDD-VVVANLDAD 83
           V+ L  DNF+  +GQ    LVEFYAPWCGHCK+LAP YEK A   +  D  +V+A +DA+
Sbjct: 40  VLTLHADNFDDAIGQHPFILVEFYAPWCGHCKSLAPEYEKAAQLLSKHDPAIVLAKVDAN 99

Query: 84  --KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS 133
             K K LA KY V GFPTLK F  G K  +EY G R+ E  V ++ ++ G +
Sbjct: 100 DEKNKPLAGKYEVQGFPTLKIFRNGGKSIQEYKGPREAEGIVEYLKKQVGPA 151

Participates in the folding of proteins containing disulfide bonds, may be involved in glycosylation, prolyl hydroxylation and triglyceride transfer.

Hordeum vulgare (taxid: 4513)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
255548505	359	protein disulfide isomerase, putative [R	0.924	0.615	0.797	6e-95
341575453	359	protein disulfide isomerase [Gossypium h	0.924	0.615	0.779	9e-95
224068456	359	predicted protein [Populus trichocarpa]	0.924	0.615	0.779	3e-91
147821099	357	hypothetical protein VITISV_038267 [Viti	0.924	0.619	0.738	2e-90
192910920	363	disulfide-isomerase precursor-like prote	0.924	0.608	0.734	4e-90
225450626	357	PREDICTED: probable protein disulfide-is	0.924	0.619	0.738	5e-90
356519270	324	PREDICTED: probable protein disulfide-is	0.924	0.682	0.738	9e-90
351724739	364	protein disulfide isomerase-like protein	0.924	0.607	0.747	1e-89
312261106	280	protein disulfide isomerase S-1 [Glycine	0.924	0.789	0.738	1e-89
255645357	364	unknown [Glycine max]	0.924	0.607	0.747	3e-89

>gi|255548505|ref|XP_002515309.1| protein disulfide isomerase, putative [Ricinus communis] gi|223545789|gb|EEF47293.1| protein disulfide isomerase, putative [Ricinus communis]

 Score =  352 bits (904), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 177/222 (79%), Positives = 192/222 (86%), Gaps = 1/222 (0%)

Query: 18  VSALADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVV 76
           ++A    VVVLT DNF + V  + +  LVEFYAPWCGHCKNLAPTYEKVAAAF  EDDVV
Sbjct: 137 IAAAPSSVVVLTADNFNEVVLDESKDVLVEFYAPWCGHCKNLAPTYEKVAAAFKSEDDVV 196

Query: 77  VANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDG 136
           +ANLDADKY+D+ EKYGVSGFPTLKFFPKGNK GE+Y GGRDLEDFV+FINEK GTSRD 
Sbjct: 197 IANLDADKYRDIGEKYGVSGFPTLKFFPKGNKAGEDYEGGRDLEDFVTFINEKSGTSRDA 256

Query: 137 KGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKN 196
           KGQLTS AGIV  LDALVKEFVAAS DEKKAVFS++E  VE LEGSTAR+GKIYLK AKN
Sbjct: 257 KGQLTSKAGIVEPLDALVKEFVAASNDEKKAVFSRLEEEVEKLEGSTARYGKIYLKSAKN 316

Query: 197 YMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 238
            M+KGSDYAKKEI+RLQRMLDKSIS AKADEF LKKNILSTF
Sbjct: 317 CMEKGSDYAKKEIERLQRMLDKSISPAKADEFTLKKNILSTF 358

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|341575453|gb|AEK80406.1| protein disulfide isomerase [Gossypium hirsutum]

 Score =  352 bits (902), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 173/222 (77%), Positives = 194/222 (87%), Gaps = 1/222 (0%)

Query: 18  VSALADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVV 76
           ++ L  +V VL  DNF++ V  + +  LVEFYAPWCGHCKNLAPTYEKVA AF  E+DVV
Sbjct: 135 IATLPSNVAVLNADNFDEIVLDETKDVLVEFYAPWCGHCKNLAPTYEKVATAFKSEEDVV 194

Query: 77  VANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDG 136
           +ANLDADKY+DLAEKYG+SGFPTLKFFPKGNK GE+Y GGRDL+DFVSFINEKCGTSRD 
Sbjct: 195 IANLDADKYRDLAEKYGISGFPTLKFFPKGNKAGEDYDGGRDLDDFVSFINEKCGTSRDA 254

Query: 137 KGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKN 196
           KGQLTSTAGI++SLDALVKEFVAAS DEKK VFSKIE  VE L+GSTARHGKIYLK AK+
Sbjct: 255 KGQLTSTAGILSSLDALVKEFVAASADEKKVVFSKIEEEVEKLKGSTARHGKIYLKAAKS 314

Query: 197 YMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 238
            ++KG+DY KKEI+RLQRMLDKSIS AKADEF LKKNILSTF
Sbjct: 315 CLEKGADYPKKEIERLQRMLDKSISPAKADEFTLKKNILSTF 356

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068456|ref|XP_002302750.1| predicted protein [Populus trichocarpa] gi|222844476|gb|EEE82023.1| predicted protein [Populus trichocarpa]

 Score =  340 bits (872), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 173/222 (77%), Positives = 189/222 (85%), Gaps = 1/222 (0%)

Query: 18  VSALADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVV 76
           ++A+   VVVLT DNF   V  +++  LVEFYAPWCGHCKNLAP YEKVA AF  E+DVV
Sbjct: 137 IAAVTSSVVVLTADNFNDIVLDENKDVLVEFYAPWCGHCKNLAPIYEKVATAFKSEEDVV 196

Query: 77  VANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDG 136
           VANL+ADKY+DLAEKYGVSGFPTLKFFPKGNK GEEY GGRDL+DFV+FINEK GTSRDG
Sbjct: 197 VANLEADKYRDLAEKYGVSGFPTLKFFPKGNKAGEEYEGGRDLDDFVAFINEKAGTSRDG 256

Query: 137 KGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKN 196
           KGQLTS AGIV SLDALVKEFVAA  DEKKAVFS+IE  VE L+GSTARHGKIYLK AK 
Sbjct: 257 KGQLTSKAGIVESLDALVKEFVAAGDDEKKAVFSRIEEEVEKLKGSTARHGKIYLKAAKT 316

Query: 197 YMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 238
            M KG+ YAK EI+RLQRML+KSIS AKADEF LKKNILSTF
Sbjct: 317 CMVKGAGYAKNEIERLQRMLEKSISPAKADEFTLKKNILSTF 358

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147821099|emb|CAN70962.1| hypothetical protein VITISV_038267 [Vitis vinifera]

 Score =  337 bits (864), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 164/222 (73%), Positives = 193/222 (86%), Gaps = 1/222 (0%)

Query: 18  VSALADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVV 76
           ++A+  +VVVLT D+F++ V  + +  LVEFYAPWCGHCK+LAP YEKVA AF  E DVV
Sbjct: 135 IAAVPSNVVVLTSDSFDEVVLNEKKDVLVEFYAPWCGHCKSLAPIYEKVATAFKSEGDVV 194

Query: 77  VANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDG 136
           +ANLDADKYKDLAEKYGVSG+PTLKFFPKGNK GE+Y GGRDLEDFV+F+NEKCGTSRDG
Sbjct: 195 IANLDADKYKDLAEKYGVSGYPTLKFFPKGNKAGEDYDGGRDLEDFVTFVNEKCGTSRDG 254

Query: 137 KGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKN 196
           KGQLTS AG VASLD+LVKEF++AS DEKKAVF++IE  VE LEGS AR+GKIY+K AK+
Sbjct: 255 KGQLTSKAGTVASLDSLVKEFISASDDEKKAVFARIEEEVEKLEGSAARYGKIYVKAAKS 314

Query: 197 YMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 238
            + KG+DYAK EI RL+RML+KSI+ AKADEF+LKKNILSTF
Sbjct: 315 SLQKGADYAKNEIQRLERMLEKSINQAKADEFILKKNILSTF 356

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|192910920|gb|ACF06568.1| disulfide-isomerase precursor-like protein [Elaeis guineensis]

 Score =  336 bits (862), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 163/222 (73%), Positives = 193/222 (86%), Gaps = 1/222 (0%)

Query: 18  VSALADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVV 76
           V+ +   VVVLT DNF + V  + +  LVEFYAPWCGHCKNLAPTYEKVA A+ LE+DVV
Sbjct: 140 VATVPSSVVVLTADNFNEVVLDETKDVLVEFYAPWCGHCKNLAPTYEKVATAYKLEEDVV 199

Query: 77  VANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDG 136
           +AN+DADKYKDLAEKYGVSG+PTLKFFPKGNK GE+Y GGRDL++FV FINEKCGTSRD 
Sbjct: 200 IANIDADKYKDLAEKYGVSGYPTLKFFPKGNKAGEDYDGGRDLDEFVKFINEKCGTSRDT 259

Query: 137 KGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKN 196
           KG+L+S AGI+ASLDALVKEFV+AS DE+KA+ S++E  VE L+GS+AR+GK YLK AK+
Sbjct: 260 KGKLSSQAGIIASLDALVKEFVSASNDERKAIASQMEEEVEKLKGSSARYGKTYLKAAKS 319

Query: 197 YMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 238
            +DKGSDYAK EI+RLQRMLDKSIS +KADEF++KKNILSTF
Sbjct: 320 CIDKGSDYAKNEIERLQRMLDKSISPSKADEFIIKKNILSTF 361

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450626|ref|XP_002282603.1| PREDICTED: probable protein disulfide-isomerase A6 isoform 1 [Vitis vinifera] gi|296089758|emb|CBI39577.3| unnamed protein product [Vitis vinifera]

 Score =  336 bits (861), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 164/222 (73%), Positives = 193/222 (86%), Gaps = 1/222 (0%)

Query: 18  VSALADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVV 76
           ++A+  +VVVLT D+F++ V  + +  LVEFYAPWCGHCK+LAP YEKVA AF  E DVV
Sbjct: 135 IAAVPSNVVVLTSDSFDEVVLNEKKDVLVEFYAPWCGHCKSLAPIYEKVATAFKSEGDVV 194

Query: 77  VANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDG 136
           +ANLDADKYKDLAEKYGVSG+PTLKFFPKGNK GE+Y GGRDLEDFV+FIN+KCGTSRDG
Sbjct: 195 IANLDADKYKDLAEKYGVSGYPTLKFFPKGNKAGEDYDGGRDLEDFVTFINDKCGTSRDG 254

Query: 137 KGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKN 196
           KGQLTS AG VASLD+LVKEF++AS DEKKAVF++IE  VE LEGS AR+GKIY+K AK+
Sbjct: 255 KGQLTSKAGTVASLDSLVKEFISASDDEKKAVFARIEEEVEKLEGSAARYGKIYVKAAKS 314

Query: 197 YMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 238
            + KG+DYAK EI RL+RML+KSI+ AKADEF+LKKNILSTF
Sbjct: 315 SLQKGADYAKNEIQRLERMLEKSINQAKADEFILKKNILSTF 356

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519270|ref|XP_003528296.1| PREDICTED: probable protein disulfide-isomerase A6-like [Glycine max]

 Score =  335 bits (859), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 164/222 (73%), Positives = 188/222 (84%), Gaps = 1/222 (0%)

Query: 18  VSALADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVV 76
           ++    +VVVLT +NF + V  + +  LVEFYAPWCGHCK+LAP YEKV  AF LE+DVV
Sbjct: 101 IATAPSNVVVLTSENFNEVVLDETKDVLVEFYAPWCGHCKSLAPIYEKVVTAFKLEEDVV 160

Query: 77  VANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDG 136
           +ANLDADKYKDLAEKY VSGFPTLKFFPKGNK GEEYGGGRDL+DFV+FINEK GTSRD 
Sbjct: 161 IANLDADKYKDLAEKYDVSGFPTLKFFPKGNKAGEEYGGGRDLDDFVAFINEKSGTSRDV 220

Query: 137 KGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKN 196
           KGQLTS AGIV SLD LVKEFVAAS +EKK++F+++E  VE L+GS +RHGKIYLK AKN
Sbjct: 221 KGQLTSQAGIVESLDVLVKEFVAASDEEKKSMFTRMEEEVEKLKGSASRHGKIYLKAAKN 280

Query: 197 YMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 238
           Y++KGSDYAK EI RLQR+LDKSIS AKADE  LKKNILST+
Sbjct: 281 YLEKGSDYAKNEIQRLQRILDKSISPAKADELTLKKNILSTY 322

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724739|ref|NP_001236300.1| protein disulfide isomerase-like protein precursor [Glycine max] gi|49615095|dbj|BAD24714.2| protein disulfide isomerase-like protein [Glycine max]

 Score =  335 bits (859), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 166/222 (74%), Positives = 188/222 (84%), Gaps = 1/222 (0%)

Query: 18  VSALADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVV 76
           ++    +VVVLT +NF + V  + +  LVEFYAPWCGHCK+LAPTYEKVA AF LE+DVV
Sbjct: 141 IATAPSNVVVLTSENFNEVVLDETKDVLVEFYAPWCGHCKSLAPTYEKVATAFKLEEDVV 200

Query: 77  VANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDG 136
           +ANLDADKYKDLAEKY VSGFPTLKFFPKGNK GEEYGGGRDL+DFV+FINEK GTSRD 
Sbjct: 201 IANLDADKYKDLAEKYDVSGFPTLKFFPKGNKAGEEYGGGRDLDDFVAFINEKSGTSRDV 260

Query: 137 KGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKN 196
           KGQLTS AGIV SLD LVKEFVAAS +EKK VF+++E  VE L+GS +RHGKIYLK AKN
Sbjct: 261 KGQLTSQAGIVESLDVLVKEFVAASDEEKKFVFTRMEEEVEKLKGSASRHGKIYLKAAKN 320

Query: 197 YMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 238
           Y++KGSDYAK EI RLQR+LDKSIS AK DE  LKKNILST+
Sbjct: 321 YLEKGSDYAKNEIQRLQRILDKSISPAKTDELTLKKNILSTY 362

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312261106|dbj|BAJ33558.1| protein disulfide isomerase S-1 [Glycine max]

 Score =  335 bits (858), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 164/222 (73%), Positives = 189/222 (85%), Gaps = 1/222 (0%)

Query: 18  VSALADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVV 76
           ++    +VVVLT +NF + V  + +  LVEFYAPWCGHCK+LAPTYEKV  AF LE+DVV
Sbjct: 57  IATAPSNVVVLTSENFNEVVLDETKDVLVEFYAPWCGHCKSLAPTYEKVVTAFKLEEDVV 116

Query: 77  VANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDG 136
           +ANLDADKYKDLAEKY VSGFPTLKFFPKGNK GEEYGGGRDL+DFV+FINEK GTSRD 
Sbjct: 117 IANLDADKYKDLAEKYDVSGFPTLKFFPKGNKAGEEYGGGRDLDDFVAFINEKSGTSRDV 176

Query: 137 KGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKN 196
           KGQLTS AGIV SLD LVKEFVAA+ +EKK++F+++E  VE L+GS +RHGKIYLK AKN
Sbjct: 177 KGQLTSQAGIVESLDVLVKEFVAANDEEKKSMFTRMEEEVEKLKGSASRHGKIYLKAAKN 236

Query: 197 YMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 238
           Y++KGSDYAK EI RLQR+LDKSIS AKADE  LKKNILST+
Sbjct: 237 YLEKGSDYAKNEIQRLQRILDKSISPAKADELTLKKNILSTY 278

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645357|gb|ACU23175.1| unknown [Glycine max]

 Score =  333 bits (855), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 166/222 (74%), Positives = 188/222 (84%), Gaps = 1/222 (0%)

Query: 18  VSALADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVV 76
           ++    +VVVLT +NF + V  + +  LVEFYAPWCGHCK+LAPTYEKVA AF LE+DVV
Sbjct: 141 IATAPSNVVVLTSENFNEVVLDETKDVLVEFYAPWCGHCKSLAPTYEKVATAFKLEEDVV 200

Query: 77  VANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDG 136
           +ANLDADKYKDLAEKY VSGFPTLKFFPKGNK GEEYGGGRDL+DFV+FINEK GTSRD 
Sbjct: 201 IANLDADKYKDLAEKYDVSGFPTLKFFPKGNKAGEEYGGGRDLDDFVAFINEKSGTSRDV 260

Query: 137 KGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKN 196
           KGQLTS AGIV SLD LVKEFVAAS +EKK VF+++E  VE L+G  +RHGKIYLK AKN
Sbjct: 261 KGQLTSQAGIVESLDVLVKEFVAASDEEKKFVFTRMEEEVEKLKGFASRHGKIYLKAAKN 320

Query: 197 YMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 238
           Y++KGSDYAK EI RLQR+LDKSIS AKADE  LKKNILST+
Sbjct: 321 YLEKGSDYAKNEIQRLQRILDKSISPAKADELTLKKNILSTY 362

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	239
TAIR|locus:2062029	361	UNE5 "UNFERTILIZED EMBRYO SAC	0.924	0.612	0.698	1.1e-78
DICTYBASE|DDB_G0276141	363	pdi1 "protein disulfide isomer	0.924	0.608	0.424	5e-44
POMBASE|SPAC17H9.14c	359	SPAC17H9.14c "protein disulfid	0.895	0.596	0.416	5.5e-38
ASPGD|ASPL0000061308	368	tigA [Emericella nidulans (tax	0.874	0.567	0.385	2.4e-37
ZFIN|ZDB-GENE-080610-1	509	p4hb "procollagen-proline, 2-o	0.958	0.449	0.327	1e-26
MGI|MGI:97464	509	P4hb "prolyl 4-hydroxylase, be	0.962	0.451	0.325	6.1e-26
RGD|3244	509	P4hb "prolyl 4-hydroxylase, be	0.966	0.453	0.309	1.3e-25
UNIPROTKB|P05307	510	P4HB "Protein disulfide-isomer	0.933	0.437	0.319	1.3e-24
FB|FBgn0025678	433	CaBP1 "calcium-binding protein	0.456	0.251	0.513	2.5e-24
UNIPROTKB|F1NK96	447	PDIA6 "Uncharacterized protein	0.485	0.259	0.471	3.2e-24

TAIR|locus:2062029 UNE5 "UNFERTILIZED EMBRYO SAC 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 791 (283.5 bits), Expect = 1.1e-78, P = 1.1e-78
 Identities = 155/222 (69%), Positives = 181/222 (81%)

Query:    18 VSALADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVV 76
             ++A+  +VVVLT DNF++ V  Q++  LVEFYAPWCGHCK+LAPTYEKVA  F  E+ VV
Sbjct:   136 LAAVPQNVVVLTPDNFDEIVLDQNKDVLVEFYAPWCGHCKSLAPTYEKVATVFKQEEGVV 195

Query:    77 VANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDG 136
             +ANLDAD +K L EKYGVSGFPTLKFFPK NK G +Y GGRDL+DFVSFINEK GTSRD 
Sbjct:   196 IANLDADAHKALGEKYGVSGFPTLKFFPKDNKAGHDYDGGRDLDDFVSFINEKSGTSRDS 255

Query:   137 KGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKN 196
             KGQLTS AGIV SLDALVKE VAAS DEKKAV S+IE     L+GST R+GK+YLK+AK+
Sbjct:   256 KGQLTSKAGIVESLDALVKELVAASEDEKKAVLSRIEEEASTLKGSTTRYGKLYLKLAKS 315

Query:   197 YMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 238
             Y++KGSDYA KE +RL R+L KSIS  KADE  LK+NIL+TF
Sbjct:   316 YIEKGSDYASKETERLGRVLGKSISPVKADELTLKRNILTTF 357

GO:0005576 "extracellular region" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0034976 "response to endoplasmic reticulum stress" evidence=IEP;RCA

GO:0009553 "embryo sac development" evidence=IMP

GO:0048868 "pollen tube development" evidence=IMP

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

DICTYBASE|DDB_G0276141 pdi1 "protein disulfide isomerase" [Dictyostelium discoideum (taxid:44689)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 95/224 (42%), Positives = 134/224 (59%)

Query:    18 VSALADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVV 76
             V     +VV L+  NF+  V  + +  LVEFYAPWCGHCK L P YE +   +  E DVV
Sbjct:   137 VKKAPSNVVDLSPSNFDSVVLDKSKNVLVEFYAPWCGHCKKLMPDYEILGNTYANEKDVV 196

Query:    77 VANLDADKY--KDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSR 134
             +A +D D    K +  KYGV+GFPTLK+F K +KDGE+Y  GRDL+ F+++IN++ G +R
Sbjct:   197 IAKIDCDAADNKAICSKYGVTGFPTLKWFGKQSKDGEKYEQGRDLDTFINYINKQAGVNR 256

Query:   135 DGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVA 194
                G+L   AG V  LD +  EF+AA+ + +K +  K +  V+ L       G  Y+KV 
Sbjct:   257 VKGGKLAVGAGRVEQLDTIATEFIAAAAEVRKELVKKAQTVVDSLPEELRTEGSYYVKVM 316

Query:   195 KNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 238
             K   +K  D+   EI R+ +++  S+S  KADEF  K NIL +F
Sbjct:   317 KTIAEKSIDFVTTEIARITKLVSGSMSGKKADEFAKKLNILESF 360

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0003756 "protein disulfide isomerase activity" evidence=IEA;IGI

GO:0042175 "nuclear outer membrane-endoplasmic reticulum membrane network" evidence=IDA

GO:0006457 "protein folding" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

POMBASE|SPAC17H9.14c SPAC17H9.14c "protein disulfide isomerase" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 92/221 (41%), Positives = 130/221 (58%)

Query:    21 LADDVVVLTEDNFEKEVGQDR-GALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN 79
             L  +VV L   NF+K V  D+   LVEFYA WCG+CK LAPTYE +   F  E +V +  
Sbjct:   138 LPSNVVELDSLNFDKVVMDDKKDVLVEFYADWCGYCKRLAPTYETLGKVFKNEPNVEIVK 197

Query:    80 LDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEE-YGGGRDLEDFVSFINEKCGTSRDGKG 138
             ++AD + D+   + V+ FPT+KFFPK +KD  E Y G R LE  + +IN+K GT R   G
Sbjct:   198 INADVFADIGRLHEVASFPTIKFFPKDDKDKPELYEGDRSLESLIEYINKKSGTQRSPDG 257

Query:   139 QLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYM 198
              L STAG + + D    EF+  S   K+ V  K+++    LE S+ R  K Y KV +  +
Sbjct:   258 TLLSTAGRIPTFDEFAAEFLDMSNAAKEVVLEKVKQ--LALEDSS-RWTKYYKKVFEKIL 314

Query:   199 DKGSDYAKKEIDRLQRML-DKSISAAKADEFVLKKNILSTF 238
             +   ++  KE  RL ++L  KSI+ A AD+F  + NIL++F
Sbjct:   315 ND-ENWVHKEAKRLSKLLRQKSIALASADDFKTRLNILNSF 354

GO:0003756 "protein disulfide isomerase activity" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0006457 "protein folding" evidence=IMP

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IMP

GO:0034599 "cellular response to oxidative stress" evidence=IMP

GO:0045454 "cell redox homeostasis" evidence=IEA

ASPGD|ASPL0000061308 tigA [Emericella nidulans (taxid:162425)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 84/218 (38%), Positives = 129/218 (59%)

Query:    24 DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
             +V +LT+  F+  VG D+   V F APWCGHCK LAPT+E +A  F LE +V++A +DA+
Sbjct:   142 NVEMLTDTTFKSVVGGDKDVFVAFTAPWCGHCKKLAPTWETLATDFALEPNVIIAKVDAE 201

Query:    84 --KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLT 141
                 K  A   GV+G+PT+KFFPKG+ +G  Y G R  E FV F+N   GT R   G L 
Sbjct:   202 AESSKATARSQGVTGYPTIKFFPKGSTEGIVYQGARTEEAFVDFVNNNAGTHRAPGGTLN 261

Query:   142 STAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKG 201
               AG + +LD +V +++ +     K     ++   +V +    ++ + Y+KVA+  + + 
Sbjct:   262 EKAGTILALDEIVAKYITS-----KNFGELVDEAKKVAKTVGGKYAEYYVKVAEK-LAQN 315

Query:   202 SDYAKKEIDRLQRMLDKSISAA-KADEFVLKKNILSTF 238
              +YA KE++RL+++L K  SA  K D+ V + N+L  F
Sbjct:   316 EEYAAKELERLKKVLSKGGSAPEKLDDMVSRSNVLRKF 353

GO:0003756 "protein disulfide isomerase activity" evidence=IEA;ISA

GO:0006457 "protein folding" evidence=IEA

GO:0034599 "cellular response to oxidative stress" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

ZFIN|ZDB-GENE-080610-1 p4hb "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide" [Danio rerio (taxid:7955)]

 Score = 305 (112.4 bits), Expect = 1.0e-26, P = 1.0e-26
 Identities = 78/238 (32%), Positives = 120/238 (50%)

Query:     1 MERYQIWLALGTLTLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAP 60
             M ++ I  AL  ++   + A  +DV+VL + NFE+ +      LVEFYAPWCGHCK LAP
Sbjct:     1 MLKFLIVCALAAMSAAEI-AEEEDVLVLKKSNFEEALKAHPNVLVEFYAPWCGHCKALAP 59

Query:    61 TYEKVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDG-EEYGGGRD 118
              Y K A     E  D+ +A +DA +  +LA+++GV G+PT+KFF  G K   +EY  GR 
Sbjct:    60 EYSKAAGMLKAEGSDIRLAKVDATEESELAQEFGVRGYPTIKFFKGGEKGNPKEYSAGRQ 119

Query:   119 LEDFVSFINEKCGTSRDGKGQLTSTAGIVASLD-ALVKEFVAASGDEKKAVFSKIERGVE 177
              ED VS++ ++ G +      +     I+A  + A++  F     ++ KA F K    V+
Sbjct:   120 AEDIVSWLKKRTGPAATTLNDVMQAESIIADNEVAVIGFFKDVESEDSKA-FIKTAEAVD 178

Query:   178 VLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNIL 235
              +         ++   AK  + K S    K+ D  +   D  +S      F+ K N L
Sbjct:   179 DIPFGITSDDSVF---AKFEVAKDSVVLFKKFDEGRNTFDGEVSKESLLNFI-KANQL 232

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

MGI|MGI:97464 P4hb "prolyl 4-hydroxylase, beta polypeptide" [Mus musculus (taxid:10090)]

 Score = 298 (110.0 bits), Expect = 6.1e-26, P = 6.1e-26
 Identities = 78/240 (32%), Positives = 121/240 (50%)

Query:     1 MERYQIWLALGTLTLFFVSALA--DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNL 58
             + R  + LAL         AL   D+V+VL + NFE+ +   +  LVEFYAPWCGHCK L
Sbjct:     2 LSRALLCLALAWAARVGADALEEEDNVLVLKKSNFEEALAAHKYLLVEFYAPWCGHCKAL 61

Query:    59 APTYEKVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDG-EEYGGG 116
             AP Y K AA    E  ++ +A +DA +  DLA++YGV G+PT+KFF  G+    +EY  G
Sbjct:    62 APEYAKAAAKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFFKNGDTASPKEYTAG 121

Query:   117 RDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVA-ASGDEKKAVFSKIERG 175
             R+ +D V+++ ++ G +        +   +V S +  V  F      D  K      E  
Sbjct:   122 READDIVNWLKKRTGPAATTLSDTAAAESLVDSSEVTVIGFFKDVESDSAKQFLLAAEAI 181

Query:   176 VEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNIL 235
              ++  G T+  G ++   +K  +DK      K+ D  +   +  I+  K  +F+ K N L
Sbjct:   182 DDIPFGITSNSG-VF---SKYQLDKDGVVLFKKFDEGRNNFEGEITKEKLLDFI-KHNQL 236

GO:0003756 "protein disulfide isomerase activity" evidence=ISO

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006457 "protein folding" evidence=ISO

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009986 "cell surface" evidence=ISO

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISO

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IEA;ISO

RGD|3244 P4hb "prolyl 4-hydroxylase, beta polypeptide" [Rattus norvegicus (taxid:10116)]

 Score = 295 (108.9 bits), Expect = 1.3e-25, P = 1.3e-25
 Identities = 74/239 (30%), Positives = 118/239 (49%)

Query:     1 MERYQIWLALGTLTLFFVSALA--DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNL 58
             + R  + LAL         AL   D+V+VL + NF + +      LVEFYAPWCGHCK L
Sbjct:     2 LSRALLCLALAWAARVGADALEEEDNVLVLKKSNFAEALAAHNYLLVEFYAPWCGHCKAL 61

Query:    59 APTYEKVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDG-EEYGGG 116
             AP Y K AA    E  ++ +A +DA +  DLA++YGV G+PT+KFF  G+    +EY  G
Sbjct:    62 APEYAKAAAKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFFKNGDTASPKEYTAG 121

Query:   117 RDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGV 176
             R+ +D V+++ ++ G +        +   +V S +  V  F   +G +    F      V
Sbjct:   122 READDIVNWLKKRTGPAATTLSDTAAAESLVDSSEVTVIGFFKDAGSDSAKQFLLAAEAV 181

Query:   177 EVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNIL 235
             + +      +  ++   +K  +DK      K+ D  +   +  I+  K  +F+ K N L
Sbjct:   182 DDIPFGITSNSDVF---SKYQLDKDGVVLFKKFDEGRNNFEGEITKEKLLDFI-KHNQL 236

GO:0003756 "protein disulfide isomerase activity" evidence=IMP

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=IEA;ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006457 "protein folding" evidence=IMP

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009986 "cell surface" evidence=IEA;ISO

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=IEA;ISO

GO:0042470 "melanosome" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IPI

UNIPROTKB|P05307 P4HB "Protein disulfide-isomerase" [Bos taurus (taxid:9913)]

 Score = 286 (105.7 bits), Expect = 1.3e-24, P = 1.3e-24
 Identities = 75/235 (31%), Positives = 120/235 (51%)

Query:     8 LALGTLTLFFVSALADD----VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYE 63
             L L    LF   A A D    V+VL + NF++ +   +  LVEFYAPWCGHCK LAP Y 
Sbjct:     7 LCLALTALFRAGAGAPDEEDHVLVLHKGNFDEALAAHKYLLVEFYAPWCGHCKALAPEYA 66

Query:    64 KVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDG-EEYGGGRDLED 121
             K A     E  ++ +A +DA +  DLA++YGV G+PT+KFF  G+    +EY  GR+ +D
Sbjct:    67 KAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFFKNGDTASPKEYTAGREADD 126

Query:   122 FVSFINEKCGTSRDGKGQLTSTAGIVASLD-ALVKEFVAASGDEKKAVFSKIERGVEVLE 180
              V+++ ++ G +        +   +V S + A++  F     D  K  F   E   ++  
Sbjct:   127 IVNWLKKRTGPAASTLSDGAAAEALVESSEVAVIGFFKDMESDSAKQFFLAAEVIDDIPF 186

Query:   181 GSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNIL 235
             G T+ +  ++   +K  +DK      K+ D  +   +  ++  K  +F+ K N L
Sbjct:   187 GITS-NSDVF---SKYQLDKDGVVLFKKFDEGRNNFEGEVTKEKLLDFI-KHNQL 236

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0003756 "protein disulfide isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

FB|FBgn0025678 CaBP1 "calcium-binding protein 1" [Drosophila melanogaster (taxid:7227)]

 Score = 280 (103.6 bits), Expect = 2.5e-24, P = 2.5e-24
 Identities = 59/115 (51%), Positives = 76/115 (66%)

Query:    19 SALADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVV 77
             S+  DDV+ LTEDNF+K V   D   LVEF+APWCGHCKNLAP + K  AA  L+  V +
Sbjct:   152 SSSGDDVIELTEDNFDKLVLNSDDIWLVEFFAPWCGHCKNLAPEWAK--AAKELKGKVKL 209

Query:    78 ANLDADKYKDLAEKYGVSGFPTLKFFPKGNK---DGEEYGGGRDLEDFVSFINEK 129
               LDA  ++  A +Y V G+PT+KFFP G+K   D +EY GGR   D VS+ ++K
Sbjct:   210 GALDATAHQSKAAEYNVRGYPTIKFFPAGSKRASDAQEYDGGRTASDIVSWASDK 264

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:2000427 "positive regulation of apoptotic cell clearance" evidence=IMP;IDA

UNIPROTKB|F1NK96 PDIA6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 262 (97.3 bits), Expect = 3.2e-24, Sum P(2) = 3.2e-24
 Identities = 58/123 (47%), Positives = 73/123 (59%)

Query:     6 IWLALGTLTLFF-VSAL---ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAP 60
             +W    + TLF  V+ L   +DDV+ LT  NF KEV Q     LVEFYAPWCGHC+ L P
Sbjct:     9 LWWGTVSCTLFLAVNGLYSASDDVIELTPTNFNKEVIQSESLWLVEFYAPWCGHCQRLTP 68

Query:    61 TYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLE 120
              ++K A A  L+  V V  +DADK++ L  +YGV GFPT+K F       E+Y GGR  E
Sbjct:    69 EWKKAATA--LKGVVKVGAVDADKHQSLGGQYGVRGFPTIKIFGANKNKAEDYQGGRTSE 126

Query:   121 DFV 123
               V
Sbjct:   127 AIV 129

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O22263	PDI21_ARATH	5, ., 3, ., 4, ., 1	0.6981	0.9246	0.6121	yes	no
P38661	PDIA6_MEDSA	5, ., 3, ., 4, ., 1	0.7219	0.9205	0.6043	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.3.4.1	LOW CONFIDENCE prediction!
3rd Layer	5.3.4	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	239
cd02998	105	cd02998, PDI_a_ERp38, PDIa family, endoplasmic ret	7e-56
TIGR01126	102	TIGR01126, pdi_dom, protein disulfide-isomerase do	3e-48
cd02961	101	cd02961, PDI_a_family, Protein Disulfide Isomerase	1e-47
pfam00085	104	pfam00085, Thioredoxin, Thioredoxin	4e-40
cd03001	103	cd03001, PDI_a_P5, PDIa family, P5 subfamily; comp	4e-38
pfam07749	95	pfam07749, ERp29, Endoplasmic reticulum protein ER	1e-34
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	1e-34
cd02995	104	cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal T	3e-33
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	9e-33
cd03002	109	cd03002, PDI_a_MPD1_like, PDI family, MPD1-like su	4e-30
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	3e-29
cd00238	93	cd00238, ERp29c, ERp29 and ERp38, C-terminal domai	3e-29
cd03005	102	cd03005, PDI_a_ERp46, PDIa family, endoplasmic ret	6e-29
cd02997	104	cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily;	4e-26
cd02947	93	cd02947, TRX_family, TRX family; composed of two g	9e-25
TIGR01068	101	TIGR01068, thioredoxin, thioredoxin	2e-22
cd03004	104	cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ER	7e-22
cd02992	114	cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhyd	1e-21
cd03000	104	cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily;	4e-21
PTZ00443	224	PTZ00443, PTZ00443, Thioredoxin domain-containing	2e-20
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	1e-19
cd02996	108	cd02996, PDI_a_ERp44, PDIa family, endoplasmic ret	1e-17
PTZ00051	98	PTZ00051, PTZ00051, thioredoxin; Provisional	1e-15
PRK09381	109	PRK09381, trxA, thioredoxin; Provisional	4e-14
cd02950	142	cd02950, TxlA, TRX-like protein A (TxlA) family; T	3e-13
cd03003	101	cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ER	4e-13
cd02994	101	cd02994, PDI_a_TMX, PDIa family, TMX subfamily; co	4e-13
PRK10996	139	PRK10996, PRK10996, thioredoxin 2; Provisional	2e-11
cd02993	109	cd02993, PDI_a_APS_reductase, PDIa family, 5'-Aden	2e-11
COG3118	304	COG3118, COG3118, Thioredoxin domain-containing pr	3e-10
COG0526	127	COG0526, TrxA, Thiol-disulfide isomerase and thior	2e-09
pfam13098	105	pfam13098, Thioredoxin_2, Thioredoxin-like domain	5e-09
cd02956	96	cd02956, ybbN, ybbN protein family; ybbN is a hypo	8e-09
PLN02309	457	PLN02309, PLN02309, 5'-adenylylsulfate reductase	2e-08
cd02949	97	cd02949, TRX_NTR, TRX domain, novel NADPH thioredo	4e-08
cd01659	69	cd01659, TRX_superfamily, Thioredoxin (TRX) superf	5e-08
cd02999	100	cd02999, PDI_a_ERp44_like, PDIa family, endoplasmi	6e-08
cd02962	152	cd02962, TMX2, TMX2 family; composed of proteins s	3e-07
cd02984	97	cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-int	5e-07
cd02953	104	cd02953, DsbDgamma, DsbD gamma family; DsbD gamma	1e-06
cd03011	123	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family,	2e-06
COG4232	569	COG4232, COG4232, Thiol:disulfide interchange prot	3e-06
TIGR00424	463	TIGR00424, APS_reduc, 5'-adenylylsulfate reductase	3e-06
PRK00293	571	PRK00293, dipZ, thiol:disulfide interchange protei	2e-04
cd02966	116	cd02966, TlpA_like_family, TlpA-like family; compo	2e-04
TIGR02187	215	TIGR02187, GlrX_arch, Glutaredoxin-like domain pro	4e-04
TIGR02187	215	TIGR02187, GlrX_arch, Glutaredoxin-like domain pro	6e-04
pfam13905	94	pfam13905, Thioredoxin_8, Thioredoxin-like	0.001
cd02963	111	cd02963, TRX_DnaJ, TRX domain, DnaJ domain contain	0.001
pfam13899	81	pfam13899, Thioredoxin_7, Thioredoxin-like	0.002
cd02985	103	cd02985, TRX_CDSP32, TRX family, chloroplastic dro	0.004
cd02973	67	cd02973, TRX_GRX_like, Thioredoxin (TRX)-Glutaredo	0.004

>gnl|CDD|239296 cd02998, PDI_a_ERp38, PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

 Score =  173 bits (441), Expect = 7e-56
 Identities = 72/105 (68%), Positives = 85/105 (80%), Gaps = 2/105 (1%)

Query: 24  DVVVLTEDNFEKEVGQDR-GALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 82
           +VV LT+ NF+K VG D+   LVEFYAPWCGHCKNLAP YEK+AA F  EDDVV+A +DA
Sbjct: 1   NVVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDA 60

Query: 83  DK-YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 126
           D+  KDLA+KYGVSGFPTLKFFPKG+ +  +Y GGRDLED V F+
Sbjct: 61  DEANKDLAKKYGVSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKFV 105

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ERp38, respectively. Also included in the alignment is an atypical PDI from Leishmania donovani containing a single a domain, and the C-terminal a domain of a P5-like protein from Entamoeba histolytica. Length = 105

>gnl|CDD|200074 TIGR01126, pdi_dom, protein disulfide-isomerase domain

 Score =  153 bits (390), Expect = 3e-48
 Identities = 61/102 (59%), Positives = 75/102 (73%), Gaps = 1/102 (0%)

Query: 28  LTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD 87
           LT  NF++ V  ++  LVEFYAPWCGHCKNLAP YEK+A     + D+V+A +DA   KD
Sbjct: 1   LTASNFDEIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKKDPDIVLAKVDATAEKD 60

Query: 88  LAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK 129
           LA ++GVSGFPT+KFFPKG K   +Y GGRDLE  V F+NEK
Sbjct: 61  LASRFGVSGFPTIKFFPKG-KKPVDYEGGRDLEAIVEFVNEK 101

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK [Protein fate, Protein folding and stabilization]. Length = 102

>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score =  152 bits (386), Expect = 1e-47
 Identities = 53/101 (52%), Positives = 66/101 (65%)

Query: 26  VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY 85
           V LT+DNF++ V   +  LVEFYAPWCGHCK LAP YEK+A     +  VVVA +D    
Sbjct: 1   VELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN 60

Query: 86  KDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 126
            DL  +YGV G+PT+K FP G+K+  +Y G R LE  V FI
Sbjct: 61  NDLCSEYGVRGYPTIKLFPNGSKEPVKYEGPRTLESLVEFI 101

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101

>gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin

 Score =  133 bits (337), Expect = 4e-40
 Identities = 56/106 (52%), Positives = 73/106 (68%), Gaps = 4/106 (3%)

Query: 24  DVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 82
            V VLT++NF++EV + D+  LV+FYAPWCG CK LAP YEK+A  +   DDV  A +DA
Sbjct: 1   VVKVLTDENFDEEVAKSDKPVLVDFYAPWCGPCKALAPEYEKLAQEYK--DDVKFAKVDA 58

Query: 83  DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 128
           D+  DLA +YGV GFPT+KFF  G K   +Y G R  +D V+FI +
Sbjct: 59  DENPDLASEYGVRGFPTIKFFKNGKKV-SDYVGARTKDDLVAFIKK 103

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. Length = 104

>gnl|CDD|239299 cd03001, PDI_a_P5, PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

 Score =  128 bits (323), Expect = 4e-38
 Identities = 54/103 (52%), Positives = 69/103 (66%), Gaps = 3/103 (2%)

Query: 24  DVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 82
           DVV LT+ NF+K+V   D   LVEFYAPWCGHCKNLAP ++K A A  L+  V V  +DA
Sbjct: 1   DVVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKA--LKGIVKVGAVDA 58

Query: 83  DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSF 125
           D ++ LA++YGV GFPT+K F  G    ++Y GGR  +  VS 
Sbjct: 59  DVHQSLAQQYGVRGFPTIKVFGAGKNSPQDYQGGRTAKAIVSA 101

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. Length = 103

>gnl|CDD|191840 pfam07749, ERp29, Endoplasmic reticulum protein ERp29, C-terminal domain

 Score =  119 bits (300), Expect = 1e-34
 Identities = 41/94 (43%), Positives = 61/94 (64%)

Query: 145 GIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDY 204
           G +  LD L  EFV AS DE+K + S++E  V  L+ S A++ K Y+KV +  ++KG DY
Sbjct: 1   GTIEELDELAAEFVTASDDERKELLSEVEEAVAKLKDSAAKYAKYYVKVMEKILEKGEDY 60

Query: 205 AKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 238
             KE+ RL+R+L+ S++  KADE   + NIL +F
Sbjct: 61  VAKELARLERLLEGSLAPEKADELTSRLNILRSF 94

ERp29 is a ubiquitously expressed endoplasmic reticulum protein found in mammals. ERp29 is comprised of two domains. This domain, the C-terminal domain, has an all helical fold. ERp29 is thought to form part of the thyroglobulin folding complex. Length = 95

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score =  128 bits (323), Expect = 1e-34
 Identities = 55/112 (49%), Positives = 74/112 (66%), Gaps = 5/112 (4%)

Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDD---VVVAN 79
           +DV+VLT+DNF+  +      LVEFYAPWCGHCK+LAP YEK  AA  L+     + +A 
Sbjct: 1   EDVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEK--AADELKKKGPPIKLAK 58

Query: 80  LDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG 131
           +DA + KDLA+KYGVSG+PTLK F  G     +Y G RD +  V ++ ++ G
Sbjct: 59  VDATEEKDLAQKYGVSGYPTLKIFRNGEDSVSDYNGPRDADGIVKYMKKQSG 110

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

>gnl|CDD|239293 cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

 Score =  115 bits (291), Expect = 3e-33
 Identities = 50/104 (48%), Positives = 67/104 (64%), Gaps = 3/104 (2%)

Query: 25  VVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
           V V+   NF++ V   D+  LVEFYAPWCGHCK LAP YE++A     +D+VV+A +DA 
Sbjct: 2   VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT 61

Query: 84  KYKDLAEKYGVSGFPTLKFFPKGNKDGE-EYGGGRDLEDFVSFI 126
              D+  ++ V GFPT+ FFP G+K    +Y G R LED + FI
Sbjct: 62  A-NDVPSEFVVDGFPTILFFPAGDKSNPIKYEGDRTLEDLIKFI 104

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins, while PDI shows a wider substrate specificity. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. EFP1 is a binding partner protein of thyroid oxidase, which is responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. Length = 104

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score =  123 bits (310), Expect = 9e-33
 Identities = 64/189 (33%), Positives = 94/189 (49%), Gaps = 30/189 (15%)

Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAF-TLEDDVVVANLD 81
           + V VLT+  F+K + ++   LV+FYAPWCGHCK LAP Y+K A      + ++V+A++D
Sbjct: 32  EHVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVD 91

Query: 82  ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG---TSRDGKG 138
           A +  +LA+++GV G+PT+KFF KGN     Y GGR  +  VS+I +  G   T  +   
Sbjct: 92  ATEEMELAQEFGVRGYPTIKFFNKGNP--VNYSGGRTADGIVSWIKKLTGPAVTEVESAS 149

Query: 139 QLTSTAGIVASL---------DALVKEFV---------------AASGDEKKAVFSKIER 174
           ++   A  +              L K+F                   G  K  V  K E 
Sbjct: 150 EIKLIAKKIFVAFYGEYTSKDSELYKKFEEVADKHREHAKFFVKKHEGKNKIYVLHKDEE 209

Query: 175 GVEVLEGST 183
           GVE+  G T
Sbjct: 210 GVELFMGKT 218

Length = 477

>gnl|CDD|239300 cd03002, PDI_a_MPD1_like, PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

 Score =  107 bits (270), Expect = 4e-30
 Identities = 50/107 (46%), Positives = 56/107 (52%), Gaps = 5/107 (4%)

Query: 25  VVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
           V  LT  NF+K V   +   LVEFYAPWCGHCKNL P Y K A        V   + D D
Sbjct: 2   VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDED 61

Query: 84  KYKDLAEKYGVSGFPTLKFFPKGNKDG----EEYGGGRDLEDFVSFI 126
           K K L  KYGV GFPTLK F    K      E+Y G R  +  V F+
Sbjct: 62  KNKPLCGKYGVQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. Length = 109

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score =  113 bits (285), Expect = 3e-29
 Identities = 55/118 (46%), Positives = 69/118 (58%), Gaps = 5/118 (4%)

Query: 23  DDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAF-TLEDDVVVANL 80
             V VL   NF++ V  + +  LVEFYAPWCGHCKNLAP YE++A  +   E DVV+A +
Sbjct: 346 GPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKM 405

Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKGNKDGE-EYGGGRDLEDFVSFINEKCGTSRDGK 137
           DA    D+   + V GFPT+KF P G K     Y G R LEDF  FI +      +GK
Sbjct: 406 DATA-NDV-PPFEVEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHATFPLEGK 461

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

>gnl|CDD|238146 cd00238, ERp29c, ERp29 and ERp38, C-terminal domain; composed of the protein disulfide isomerase (PDI)-like proteins ERp29 and ERp38

 Score =  105 bits (263), Expect = 3e-29
 Identities = 39/93 (41%), Positives = 61/93 (65%), Gaps = 1/93 (1%)

Query: 147 VASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAK 206
           +  LD L KEFV AS +E+K +  K++  VE L+ + A++ K Y+KV +  ++KG DY +
Sbjct: 1   IEELDELAKEFVDASDEERKELLEKVKEAVEKLKEAEAKYAKYYVKVMEKILEKGEDYVE 60

Query: 207 KEIDRLQRMLDKSI-SAAKADEFVLKKNILSTF 238
           KE+ RL+R+L+K   +  KADE   + NIL +F
Sbjct: 61  KELARLERLLEKKGLAPEKADELTRRLNILRSF 93

ERp29 (also called ERp28) is a ubiquitous endoplasmic reticulum (ER)-resident protein expressed in high levels in secretory cells. It contains a redox inactive TRX-like domain at the N-terminus. The expression profile of ERp29 suggests a role in secretory protein production, distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex and is essential in regulating the secretion of thyroglobulin. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. ERp38 is a P5-like protein, first isolated from alfalfa (the cDNA clone was named G1), which contains two redox active TRX domains at the N-terminus, like human P5. However, unlike human P5, ERp38 also contains a C-terminal domain with homology to the C-terminal domain of ERp29. It may be a glucose-regulated protein. The function of the all-helical C-terminal domain of ERp29 and ERp38 remains unclear. The C-terminal domain of Wind is thought to provide a distinct site required for interaction with its substrate, Pipe. Length = 93

>gnl|CDD|239303 cd03005, PDI_a_ERp46, PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

 Score =  104 bits (262), Expect = 6e-29
 Identities = 41/103 (39%), Positives = 64/103 (62%), Gaps = 3/103 (2%)

Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAF-TLEDDVVVANLDAD 83
           V+ LTEDNF+  +  +    V+F+APWCGHCK LAPT+E++A  F      V +A +D  
Sbjct: 2   VLELTEDNFDHHI-AEGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCT 60

Query: 84  KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 126
           ++++L  ++ V G+PTL  F K  +  ++Y G RDL+    F+
Sbjct: 61  QHRELCSEFQVRGYPTLLLF-KDGEKVDKYKGTRDLDSLKEFV 102

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. Length = 102

>gnl|CDD|239295 cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

 Score = 97.4 bits (243), Expect = 4e-26
 Identities = 45/105 (42%), Positives = 63/105 (60%), Gaps = 3/105 (2%)

Query: 24  DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
           DVV LT+++F K + +++  LV FYAPWCGHCK + P + K A     +   V+A +D  
Sbjct: 1   DVVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCT 60

Query: 84  K--YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 126
           K  +  L E+Y V GFPT K+F  G K  E+Y G R  ED + F+
Sbjct: 61  KPEHDALKEEYNVKGFPTFKYFENG-KFVEKYEGERTAEDIIEFM 104

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. Length = 104

>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

 Score = 93.4 bits (233), Expect = 9e-25
 Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 10/100 (10%)

Query: 31  DNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAE 90
           + FE+ +   +  +V+F+APWCG CK +AP  E++A  +     V    +D D+  +LAE
Sbjct: 1   EEFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEEY---PKVKFVKVDVDENPELAE 57

Query: 91  KYGVSGFPTLKFFPKGNKDGEEYG---GGRDLEDFVSFIN 127
           +YGV   PT  FF    K+G+E     G    E+   F+ 
Sbjct: 58  EYGVRSIPTFLFF----KNGKEVDRVVGADPKEELEEFLE 93

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93

>gnl|CDD|200072 TIGR01068, thioredoxin, thioredoxin

 Score = 87.7 bits (218), Expect = 2e-22
 Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 3/82 (3%)

Query: 28  LTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 86
           LT+ NF++ +   D+  LV+F+APWCG CK +AP  E++A     E  V    L+ D+  
Sbjct: 1   LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAK--EYEGKVKFVKLNVDENP 58

Query: 87  DLAEKYGVSGFPTLKFFPKGNK 108
           D+A KYG+   PTL  F  G +
Sbjct: 59  DIAAKYGIRSIPTLLLFKNGKE 80

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by This model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin [Energy metabolism, Electron transport]. Length = 101

>gnl|CDD|239302 cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score = 86.2 bits (214), Expect = 7e-22
 Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 4/104 (3%)

Query: 25  VVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
           V+ LT ++F + V   +   LV+FYAPWCG C+ L P   K A A  L+  V V ++D  
Sbjct: 3   VITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARA--LKGKVKVGSVDCQ 60

Query: 84  KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGG-GRDLEDFVSFI 126
           KY+ L ++  +  +PT++ +P        Y G  RD +  + FI
Sbjct: 61  KYESLCQQANIRAYPTIRLYPGNASKYHSYNGWHRDADSILEFI 104

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. Length = 104

>gnl|CDD|239290 cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

 Score = 86.2 bits (214), Expect = 1e-21
 Identities = 38/101 (37%), Positives = 54/101 (53%), Gaps = 13/101 (12%)

Query: 23  DDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDD----VVV 77
           D V+VL   +F   + G     LVEFYA WCGHC+  APT++K+A            V V
Sbjct: 1   DPVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDL---RKWRPVVRV 57

Query: 78  ANLD--ADKYKDLAEKYGVSGFPTLKFFP---KGNKDGEEY 113
           A +D   ++   L   +GV+G+PTL++FP   K   DG + 
Sbjct: 58  AAVDCADEENVALCRDFGVTGYPTLRYFPPFSKEATDGLKQ 98

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate -> dithiol of the QSOX TRX domain -> dithiols of the QSOX ERV1p domain -> FAD -> oxygen. Length = 114

>gnl|CDD|239298 cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

 Score = 84.4 bits (209), Expect = 4e-21
 Identities = 42/99 (42%), Positives = 58/99 (58%), Gaps = 4/99 (4%)

Query: 30  EDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAF-TLEDDVVVANLDADKYKDL 88
           +D+F K+V ++   LV+FYAPWCGHCK L P + +V A   +    V V  LDA  Y  +
Sbjct: 6   DDSF-KDVRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSI 64

Query: 89  AEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN 127
           A ++GV G+PT+K   KG+     Y G R  +D V F N
Sbjct: 65  ASEFGVRGYPTIKLL-KGDLA-YNYRGPRTKDDIVEFAN 101

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. Length = 104

>gnl|CDD|185622 PTZ00443, PTZ00443, Thioredoxin domain-containing protein; Provisional

 Score = 85.8 bits (212), Expect = 2e-20
 Identities = 54/163 (33%), Positives = 82/163 (50%), Gaps = 14/163 (8%)

Query: 22  ADDVVVLTEDNFEKEVGQDRGA-----LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVV 76
           A+ +V+L + NFEK      GA      V+FYAPWC HC+ +AP +E++A A  L+  V 
Sbjct: 29  ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKA--LKGQVN 86

Query: 77  VANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDG 136
           VA+LDA +  +LA+++ + G+PTL  F KG K  +  GG R  E   +F         D 
Sbjct: 87  VADLDATRALNLAKRFAIKGYPTLLLFDKG-KMYQYEGGDRSTEKLAAF------ALGDF 139

Query: 137 KGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVL 179
           K  L +      S  AL  +F  +  +E   ++     G   +
Sbjct: 140 KKALGAPVPAPLSFFALTIDFFVSGTNEALRIYDAAFAGFFTI 182

Length = 224

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score = 86.7 bits (215), Expect = 1e-19
 Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 1/105 (0%)

Query: 25  VVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
           V V+  + FE+ V + D+  L+E YAPWCGHCKNL P Y ++   +   D ++VA ++  
Sbjct: 359 VKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGT 418

Query: 84  KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 128
             +   E++  S FPT+ F   G +    Y G R +E F  F+N+
Sbjct: 419 ANETPLEEFSWSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNK 463

Length = 477

>gnl|CDD|239294 cd02996, PDI_a_ERp44, PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

 Score = 75.5 bits (186), Expect = 1e-17
 Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 4/107 (3%)

Query: 24  DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLE----DDVVVAN 79
           ++V LT  N +  +      LV FYA WC   + L P +E+ AA    E      VV   
Sbjct: 2   EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGK 61

Query: 80  LDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 126
           +D DK  D+A++Y ++ +PTLK F  G     EY G R +E    F+
Sbjct: 62  VDCDKESDIADRYRINKYPTLKLFRNGMMMKREYRGQRSVEALAEFV 108

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Length = 108

>gnl|CDD|173347 PTZ00051, PTZ00051, thioredoxin; Provisional

 Score = 69.5 bits (170), Expect = 1e-15
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 3/92 (3%)

Query: 27  VLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 86
           V ++  FE  + Q+   +V+FYA WCG CK +AP YE+ +  +T    +V   +D D+  
Sbjct: 5   VTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT---KMVFVKVDVDELS 61

Query: 87  DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD 118
           ++AEK  ++  PT K F  G+      G   +
Sbjct: 62  EVAEKENITSMPTFKVFKNGSVVDTLLGANDE 93

Length = 98

>gnl|CDD|181812 PRK09381, trxA, thioredoxin; Provisional

 Score = 65.9 bits (160), Expect = 4e-14
 Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 3/96 (3%)

Query: 21  LADDVVVLTEDNFEKEVGQDRG-ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN 79
           ++D ++ LT+D+F+ +V +  G  LV+F+A WCG CK +AP  +++A  +  +  + VA 
Sbjct: 1   MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAK 58

Query: 80  LDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGG 115
           L+ D+    A KYG+ G PTL  F  G     + G 
Sbjct: 59  LNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGA 94

Length = 109

>gnl|CDD|239248 cd02950, TxlA, TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

 Score = 64.7 bits (158), Expect = 3e-13
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 5/81 (6%)

Query: 36  EVGQDRG--ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYG 93
           EV    G   LVEFYA WC  C+ +AP   K+   +  + + V+ N+D  K+    ++Y 
Sbjct: 14  EVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYR 73

Query: 94  VSGFPTLKFFPKGNKDGEEYG 114
           V G P   F    +++G E G
Sbjct: 74  VDGIPHFVFL---DREGNEEG 91

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. Length = 142

>gnl|CDD|239301 cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score = 62.9 bits (153), Expect = 4e-13
 Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 3/102 (2%)

Query: 24  DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
           ++V L   +F+  V       V FY+P C HC +LAPT+ + A    ++  + +  ++  
Sbjct: 2   EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAK--EMDGVIRIGAVNCG 59

Query: 84  KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSF 125
             + L    GV+ +P+L  FP G    E+Y G R  E  V F
Sbjct: 60  DDRMLCRSQGVNSYPSLYVFPSGMN-PEKYYGDRSKESLVKF 100

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Length = 101

>gnl|CDD|239292 cd02994, PDI_a_TMX, PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

 Score = 63.2 bits (154), Expect = 4e-13
 Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 13/109 (11%)

Query: 24  DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDD--VVVANLD 81
           +VV LT+ N+   V +    ++EFYAPWC  C+ L P +E+ A      DD  + VA +D
Sbjct: 2   NVVELTDSNWT-LVLEGE-WMIEFYAPWCPACQQLQPEWEEFA---DWSDDLGINVAKVD 56

Query: 82  ADKYKDLAEKYGVSGFPTLKFFPKGNKDGE--EYGGGRDLEDFVSFINE 128
             +   L+ ++ V+  PT   +    KDG    Y G RD ED +SFI E
Sbjct: 57  VTQEPGLSGRFFVTALPT--IYHA--KDGVFRRYQGPRDKEDLISFIEE 101

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. Length = 101

>gnl|CDD|182889 PRK10996, PRK10996, thioredoxin 2; Provisional

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 3/89 (3%)

Query: 19  SALAD-DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVV 77
             L D +V+  T +  +K +  D   +++F+APWCG C+N AP +E VAA  + +   V 
Sbjct: 30  HDLFDGEVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVK 89

Query: 78  ANLDADKYKDLAEKYGVSGFPTLKFFPKG 106
            N +A+  ++L+ ++ +   PT+  F  G
Sbjct: 90  VNTEAE--RELSARFRIRSIPTIMIFKNG 116

Length = 139

>gnl|CDD|239291 cd02993, PDI_a_APS_reductase, PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

 Score = 59.0 bits (143), Expect = 2e-11
 Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 7/109 (6%)

Query: 24  DVVVLTEDNFEKEVGQDR---GALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
            VV L+    E     +R     LV  YAPWC  C+ +  +YE++A       +V VA  
Sbjct: 2   AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLA-GSNVKVAKF 60

Query: 81  DADKY-KDLA-EKYGVSGFPTLKFFPKGNKDGEEY-GGGRDLEDFVSFI 126
           +AD   ++ A E+  +  FPT+ FFPK ++   +Y    RD++  + F+
Sbjct: 61  NADGEQREFAKEELQLKSFPTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH -> C-terminal TRX domain -> N-terminal reductase domain -> APS. Plant-type APS reductase shows no homology to that of dissimilatory sulfate-reducing bacteria, which is an iron-sulfur flavoenzyme. Also included in the alignment is EYE2 from Chlamydomonas reinhardtii, a protein required for eyespot assembly. Length = 109

>gnl|CDD|225660 COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 36/85 (42%), Positives = 49/85 (57%), Gaps = 9/85 (10%)

Query: 29  TEDNFEKEVGQDRGA---LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY 85
           TE NFE+EV Q       LV+F+APWCG CK L PT EK+AA +  +    +A ++ D  
Sbjct: 29  TEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK--FKLAKVNCDAE 86

Query: 86  KDLAEKYGVSGFPTLKFFPKGNKDG 110
             +A ++GV   PT+  F    KDG
Sbjct: 87  PMVAAQFGVQSIPTVYAF----KDG 107

Length = 304

>gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 53.7 bits (128), Expect = 2e-09
 Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 6/105 (5%)

Query: 28  LTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA-DKYK 86
           L          + +  LV+F+APWC  C+  AP  E++A  +    DV V  ++  D+  
Sbjct: 20  LDGAPLSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEY--GGDVEVVAVNVDDENP 77

Query: 87  DLAEKYG--VSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINE 128
           DLA ++G  V   PTL  F  G + D    G     E  +  + E
Sbjct: 78  DLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVLPKEALIDALGE 122

Length = 127

>gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain

 Score = 52.0 bits (125), Expect = 5e-09
 Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 14/103 (13%)

Query: 38  GQDRGALVEFYAPWCGHCKNLAPTYEKVAA-AFTLEDDVVVANLDADK------------ 84
           G  +  LV F  P C +CK L     K       L+D+ VV  ++ D             
Sbjct: 3   GNGKPVLVVFTDPDCPYCKKLHKELLKDPDVQEYLKDNFVVIYVNVDDSKEVTDFDGETL 62

Query: 85  -YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 126
             K+LA KYGV G PT+ F     K+     G    E+F+  +
Sbjct: 63  SEKELARKYGVRGTPTIVFLDGDGKEVARLPGYLPPEEFLKLL 105

Length = 105

>gnl|CDD|239254 cd02956, ybbN, ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

 Score = 51.5 bits (124), Expect = 8e-09
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 4/78 (5%)

Query: 31  DNFEKEVGQ--DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDL 88
            NF++ + +      +V+F+AP     K L P  E++A  +  +   V+A ++ D    +
Sbjct: 1   QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ--FVLAKVNCDAQPQI 58

Query: 89  AEKYGVSGFPTLKFFPKG 106
           A+++GV   PT+  F  G
Sbjct: 59  AQQFGVQALPTVYLFAAG 76

Its gene has been sequenced from several gammaproteobacteria and actinobacteria. Length = 96

>gnl|CDD|215175 PLN02309, PLN02309, 5'-adenylylsulfate reductase

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 4/100 (4%)

Query: 31  DNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-KYKDLA 89
           +N  K   +    LV  YAPWC  C+ +  +YE++A        V VA   AD   K+ A
Sbjct: 356 ENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLA-GSGVKVAKFRADGDQKEFA 414

Query: 90  -EKYGVSGFPTLKFFPKGNKDGEEYGG-GRDLEDFVSFIN 127
            ++  +  FPT+  FPK +    +Y    RD++  +SF+N
Sbjct: 415 KQELQLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVN 454

Length = 457

>gnl|CDD|239247 cd02949, TRX_NTR, TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

 Score = 49.4 bits (118), Expect = 4e-08
 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 40  DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
           DR  LV + +P CG C+ L P   KV   F  +  V    +D D+ +++AE  G+ G PT
Sbjct: 13  DRLILVLYTSPTCGPCRTLKPILNKVIDEF--DGAVHFVEIDIDEDQEIAEAAGIMGTPT 70

Query: 100 LKFF 103
           ++FF
Sbjct: 71  VQFF 74

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. Length = 97

>gnl|CDD|238829 cd01659, TRX_superfamily, Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

 Score = 48.5 bits (115), Expect = 5e-08
 Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 44  LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAE---KYGVSGFPTL 100
           LV FYAPWC  C+ L P   ++A        V    +D D+   L +   +YGV G PTL
Sbjct: 1   LVLFYAPWCPFCQALRPVLAELALLN---KGVKFEAVDVDEDPALEKELKRYGVGGVPTL 57

Query: 101 KFFPKGNK 108
             F  G  
Sbjct: 58  VVFGPGIG 65

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. Length = 69

>gnl|CDD|239297 cd02999, PDI_a_ERp44_like, PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

 Score = 48.9 bits (117), Expect = 6e-08
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 44  LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-YKDLAEKYGVSGFPTLKF 102
            V FYA WC    +  P +  +++ F     +    ++       L  +YGV GFPT+  
Sbjct: 22  AVLFYASWCPFSASFRPHFNALSSMFP---QIRHLAIEESSIKPSLLSRYGVVGFPTILL 78

Query: 103 FPKGNKDGEEYGGGRDLEDFVSFI 126
           F    +    Y G R L+   +F 
Sbjct: 79  FNSTPR--VRYNGTRTLDSLAAFY 100

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. Length = 100

>gnl|CDD|239260 cd02962, TMX2, TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 18/118 (15%)

Query: 6   IWLALGTLTLFFVSAL---------ADDVVVLTEDNFEKEVGQDRGA--LVEFYAPWCGH 54
           I L L  L L  V  L          + +   T    E+E+ +D+    LVEF+  W   
Sbjct: 2   IRLGLLYLLLCIVVYLLAPQPLYMGPEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPE 61

Query: 55  CKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG------FPTLKFFPKG 106
           C N AP + +++  +   +++    +D  ++ ++AEK+ VS        PT+  F  G
Sbjct: 62  CVNFAPVFAELSLKYNN-NNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGG 118

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail. Length = 152

>gnl|CDD|239282 cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

 Score = 46.5 bits (111), Expect = 5e-07
 Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 4/80 (5%)

Query: 29  TEDNFEKEVGQDRGAL--VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 86
           +E+ FE+ +  D   L  + F+APW   CK +   +E++A        V+  +++A++  
Sbjct: 1   SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPS--VLFLSIEAEELP 58

Query: 87  DLAEKYGVSGFPTLKFFPKG 106
           +++EK+ ++  PT  FF  G
Sbjct: 59  EISEKFEITAVPTFVFFRNG 78

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Length = 97

>gnl|CDD|239251 cd02953, DsbDgamma, DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 23/91 (25%), Positives = 31/91 (34%), Gaps = 21/91 (23%)

Query: 30  EDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY---- 85
           E    + + Q +   V+F A WC  C        KV       D  V A L  D      
Sbjct: 1   EAALAQALAQGKPVFVDFTADWCVTC--------KVNEKVVFSDPEVQAALKKDVVLLRA 52

Query: 86  ---------KDLAEKYGVSGFPTLKFFPKGN 107
                      L +++GV G PT  F+  G 
Sbjct: 53  DWTKNDPEITALLKRFGVFGPPTYLFYGPGG 83

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes. Length = 104

>gnl|CDD|239309 cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 17/83 (20%)

Query: 43  ALVEFYAPWCGHCKNLAPTYEKVAAAFTL--------EDDVVVANLDADKYK-------- 86
            LV F+A WC  C+  +PT  ++AA + +        +D  V   +    Y         
Sbjct: 23  VLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVINDPD 82

Query: 87  -DLAEKYGVSGFPTLKFFPKGNK 108
             ++ ++GVS  P +     G  
Sbjct: 83  GVISARWGVSVTPAIVIVDPGGI 105

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. Length = 123

>gnl|CDD|226685 COG4232, COG4232, Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 8/80 (10%)

Query: 38  GQDRGALVEFYAPWCGHCKNLAP-TYEKVAAAFTLEDDV-----VVANLDADKYKDLAEK 91
            + +  +++FYA WC  CK     T+        L+D V     V AN  A     L ++
Sbjct: 472 AKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAI--TALLKR 529

Query: 92  YGVSGFPTLKFFPKGNKDGE 111
            GV G PT  FF     + E
Sbjct: 530 LGVFGVPTYLFFGPQGSEPE 549

Length = 569

>gnl|CDD|232970 TIGR00424, APS_reduc, 5'-adenylylsulfate reductase, thioredoxin-independent

 Score = 47.3 bits (112), Expect = 3e-06
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 2/86 (2%)

Query: 44  LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA-NLDADKYKDLAEKYGVSGFPTLKF 102
           LV  YAPWC  C+ +  +Y ++A         V     D D+ +   ++  +  FPT+ F
Sbjct: 375 LVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILF 434

Query: 103 FPKGNKDGEEY-GGGRDLEDFVSFIN 127
           FPK +    +Y    RD++  +SF+N
Sbjct: 435 FPKHSSRPIKYPSEKRDVDSLMSFVN 460

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis [Central intermediary metabolism, Sulfur metabolism]. Length = 463

>gnl|CDD|234717 PRK00293, dipZ, thiol:disulfide interchange protein precursor; Provisional

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 21/91 (23%)

Query: 38  GQDRGALVEFYAPWCGHCKNLAPTYEK-------VAAAFT----LEDDVVVANLDADKYK 86
           G+ +  +++ YA WC  CK     +EK       V  A      L+ D V AN   D   
Sbjct: 472 GKGKPVMLDLYADWCVACKE----FEKYTFSDPQVQQALADTVLLQAD-VTANNAED--V 524

Query: 87  DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGR 117
            L + Y V G PT+ FF   +  G+E    R
Sbjct: 525 ALLKHYNVLGLPTILFF---DAQGQEIPDAR 552

Length = 571

>gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 25/95 (26%)

Query: 39  QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA-NLD---------------- 81
           + +  LV F+A WC  C+   P  E +A  +  +   VV  N+D                
Sbjct: 18  KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGI 77

Query: 82  -----ADKYKDLAEKYGVSGFPTLKFFPKGNKDGE 111
                 D   +LA+ YGV G PT       ++DG 
Sbjct: 78  TFPVLLDPDGELAKAYGVRGLPTTFLI---DRDGR 109

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116

>gnl|CDD|233769 TIGR02187, GlrX_arch, Glutaredoxin-like domain protein

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 7/107 (6%)

Query: 52  CGHCKNLAPTYEKVAAAFTLEDD---VVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK 108
           C +CK      E++    +       + + + D  + K+ AEKYGV   PT     +G  
Sbjct: 34  CQYCKET----EQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKD 89

Query: 109 DGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVK 155
            G  Y G     +F + I +    S+   G    T  ++ SLD  V+
Sbjct: 90  GGIRYTGIPAGYEFAALIEDIVRVSQGEPGLSEKTVELLQSLDEPVR 136

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. Length = 215

>gnl|CDD|233769 TIGR02187, GlrX_arch, Glutaredoxin-like domain protein

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 9/84 (10%)

Query: 47  FYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL-DADKYKDLAEKYGVSGFPTLKFFPK 105
           F  P C +C    P    +A  F L +D ++  + +A++  DLAEKYGV   P +     
Sbjct: 140 FVTPTCPYC----PYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVI--- 192

Query: 106 GNKDGEEYGGGRDLEDFVSFINEK 129
            NK  EE+ G    E F+ +I   
Sbjct: 193 -NKGVEEFVGAYPEEQFLEYILSA 215

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. Length = 215

>gnl|CDD|222448 pfam13905, Thioredoxin_8, Thioredoxin-like

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 26/82 (31%)

Query: 44  LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD---------------- 87
           L+ F+A WC  C+   P  +++      +  V +  +  D+ ++                
Sbjct: 5   LLYFWASWCPPCRAFTPELKELYEKLK-KPKVEIVYVSLDRDEEEWKKYLKKMPKDWLNV 63

Query: 88  ---------LAEKYGVSGFPTL 100
                    L   YGV   PTL
Sbjct: 64  PFGDKERNELLRLYGVKAIPTL 85

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 94

>gnl|CDD|239261 cd02963, TRX_DnaJ, TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 22  ADDVVVLTEDNFEKEV---GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLED-DVVV 77
            D    LT   +E E+      +  L++  + WC  C ++ P +++V     LE   V +
Sbjct: 3   FDYKYSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQ--ELEPLGVGI 60

Query: 78  ANLDADKYKDLAEKYGVSGFPTL 100
           A ++A   + LA K G    P +
Sbjct: 61  ATVNAGHERRLARKLGAHSVPAI 83

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network. Length = 111

>gnl|CDD|222442 pfam13899, Thioredoxin_7, Thioredoxin-like

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 1/62 (1%)

Query: 44  LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 103
           LV+F A WC  C+ L   +        L +  V+  +D           G  G P + F 
Sbjct: 21  LVDFGADWCPTCQALDRDFLSDPRVKALAEKFVLLRVDVTTRDPNLLLDG-QGVPHVVFL 79

Query: 104 PK 105
             
Sbjct: 80  DP 81

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 81

>gnl|CDD|239283 cd02985, TRX_CDSP32, TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

 Score = 35.5 bits (82), Expect = 0.004
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 6/85 (7%)

Query: 38  GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL---DADKYKDLAEKYGV 94
            + R  ++EF     G    + PT  K++      +DVV   +   + D   +L  +  +
Sbjct: 13  AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC---NDVVFLLVNGDENDSTMELCRREKI 69

Query: 95  SGFPTLKFFPKGNKDGEEYGGGRDL 119
              P   F+  G K  EE G G D 
Sbjct: 70  IEVPHFLFYKDGEKIHEEEGIGPDE 94

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form. Length = 103

>gnl|CDD|239271 cd02973, TRX_GRX_like, Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

 Score = 34.5 bits (80), Expect = 0.004
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 47  FYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 100
           F +P C +C +      ++AA   L  ++    +DA ++ DLA++YGV   P +
Sbjct: 6   FVSPTCPYCPDAVQAANRIAA---LNPNISAEMIDAAEFPDLADEYGVMSVPAI 56

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacterial AhpF, which has a similar fold as PfPDO with two TRX-fold subdomains but without the second CXXC motif. Length = 67

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	239
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.93
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.93
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.92
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.92
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.91
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.91
PF07749	95	ERp29: Endoplasmic reticulum protein ERp29, C-term	99.91
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	99.9
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.9
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	99.9
PTZ00102	477	disulphide isomerase; Provisional	99.89
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.89
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.89
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.89
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.88
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.88
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.88
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.88
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.88
cd00238	93	ERp29c ERp29 and ERp38, C-terminal domain; compose	99.88
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.87
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.87
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.87
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.87
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.87
PRK09381	109	trxA thioredoxin; Provisional	99.86
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.86
PHA02278	103	thioredoxin-like protein	99.86
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.85
PRK10996	139	thioredoxin 2; Provisional	99.85
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.85
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.85
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.85
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.85
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.84
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.84
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.84
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	99.83
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.82
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.82
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.82
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.81
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.81
PLN02309	457	5'-adenylylsulfate reductase	99.81
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.81
KOG4277	468	consensus Uncharacterized conserved protein, conta	99.81
PTZ00102	477	disulphide isomerase; Provisional	99.81
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.8
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	99.8
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.8
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.8
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.78
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.76
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.76
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.76
PTZ00051	98	thioredoxin; Provisional	99.75
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.75
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	99.74
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	99.73
cd02947	93	TRX_family TRX family; composed of two groups: Gro	99.72
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.71
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.7
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	99.66
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.64
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	99.64
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.63
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	99.63
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	99.61
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.61
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.6
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.6
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.59
PTZ00062	204	glutaredoxin; Provisional	99.58
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.58
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.58
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.58
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	99.54
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	99.53
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.53
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	99.51
PHA02125	75	thioredoxin-like protein	99.48
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	99.46
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.45
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	99.44
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.44
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.44
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.43
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.43
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.41
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	99.39
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	99.39
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	99.37
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	99.37
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	99.37
PRK13728	181	conjugal transfer protein TrbB; Provisional	99.37
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	99.32
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	99.32
COG2143	182	Thioredoxin-related protein [Posttranslational mod	99.31
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.28
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	99.28
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	99.26
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	99.23
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	99.23
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	99.21
KOG0913	248	consensus Thiol-disulfide isomerase and thioredoxi	99.2
smart00594	122	UAS UAS domain.	99.19
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	99.18
PTZ00056	199	glutathione peroxidase; Provisional	99.16
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	99.16
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	99.15
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	99.15
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	99.15
PLN02412	167	probable glutathione peroxidase	99.09
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	99.06
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	99.01
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	99.01
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	98.98
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	98.96
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	98.88
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	98.84
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	98.83
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	98.78
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	98.77
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	98.74
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	98.73
PTZ00256	183	glutathione peroxidase; Provisional	98.73
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	98.71
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	98.7
PF13728	215	TraF: F plasmid transfer operon protein	98.69
KOG2603	331	consensus Oligosaccharyltransferase, gamma subunit	98.66
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	98.66
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	98.64
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	98.63
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	98.61
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	98.6
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	98.58
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	98.54
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	98.54
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	98.53
KOG1672	211	consensus ATP binding protein [Posttranslational m	98.5
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	98.48
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	98.47
PRK13190	202	putative peroxiredoxin; Provisional	98.46
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	98.45
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	98.45
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	98.44
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	98.43
PRK15000	200	peroxidase; Provisional	98.4
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	98.36
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	98.34
KOG3425	128	consensus Uncharacterized conserved protein [Funct	98.34
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	98.29
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	98.28
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	98.28
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	98.28
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.26
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.25
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	98.25
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	98.24
PRK11200	85	grxA glutaredoxin 1; Provisional	98.24
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	98.21
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	98.19
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	98.18
PRK13189	222	peroxiredoxin; Provisional	98.16
PRK10606	183	btuE putative glutathione peroxidase; Provisional	98.16
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	98.15
PTZ00137	261	2-Cys peroxiredoxin; Provisional	98.15
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	98.13
PRK13599	215	putative peroxiredoxin; Provisional	98.1
PRK13191	215	putative peroxiredoxin; Provisional	98.1
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	98.07
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	98.02
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.01
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	97.99
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	97.98
PTZ00253	199	tryparedoxin peroxidase; Provisional	97.97
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	97.95
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	97.94
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	97.94
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	97.84
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	97.83
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	97.82
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	97.81
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.75
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	97.7
PHA03050	108	glutaredoxin; Provisional	97.69
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	97.64
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	97.61
PRK10329	81	glutaredoxin-like protein; Provisional	97.61
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	97.6
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	97.57
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	97.55
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	97.52
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	97.5
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	97.47
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	97.39
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	97.38
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	97.36
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	97.28
PRK10638	83	glutaredoxin 3; Provisional	97.2
COG1331	667	Highly conserved protein containing a thioredoxin	97.17
PF13743	176	Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.	97.09
KOG3170	240	consensus Conserved phosducin-like protein [Signal	97.08
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	97.03
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	97.01
cd03069	104	PDI_b_ERp57 PDIb family, ERp57 subfamily, first re	96.84
KOG2640	319	consensus Thioredoxin [Function unknown]	96.82
KOG3171	273	consensus Conserved phosducin-like protein [Signal	96.73
PRK10824	115	glutaredoxin-4; Provisional	96.58
PTZ00062	204	glutaredoxin; Provisional	96.39
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	96.37
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	96.22
KOG1752	104	consensus Glutaredoxin and related proteins [Postt	96.14
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	95.89
cd02974	94	AhpF_NTD_N Alkyl hydroperoxide reductase F subunit	95.55
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	95.3
COG1651	244	DsbG Protein-disulfide isomerase [Posttranslationa	95.24
PF01323	193	DSBA: DSBA-like thioredoxin domain; InterPro: IPR0	94.82
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	94.54
cd03040	77	GST_N_mPGES2 GST_N family; microsomal Prostaglandi	94.31
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	94.14
COG3019	149	Predicted metal-binding protein [General function	94.13
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	93.72
cd03074	120	PDI_b'_Calsequestrin_C Protein Disulfide Isomerase	93.34
cd02977	105	ArsC_family Arsenate Reductase (ArsC) family; comp	92.92
cd03068	107	PDI_b_ERp72 PDIb family, ERp72 subfamily, first re	92.69
cd03060	71	GST_N_Omega_like GST_N family, Omega-like subfamil	92.33
KOG2507	506	consensus Ubiquitin regulatory protein UBXD2, cont	92.1
KOG1422	221	consensus Intracellular Cl- channel CLIC, contains	91.77
PHA03075	123	glutaredoxin-like protein; Provisional	91.52
cd02978	72	KaiB_like KaiB-like family; composed of the circad	91.29
cd03041	77	GST_N_2GST_N GST_N family, 2 repeats of the N-term	89.66
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	89.29
TIGR02742	130	TrbC_Ftype type-F conjugative transfer system pili	88.95
PF13778	118	DUF4174: Domain of unknown function (DUF4174)	88.82
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	88.53
COG4545	85	Glutaredoxin-related protein [Posttranslational mo	88.51
TIGR01617	117	arsC_related transcriptional regulator, Spx/MgsR f	88.38
PF06053	249	DUF929: Domain of unknown function (DUF929); Inter	87.98
PRK01655	131	spxA transcriptional regulator Spx; Reviewed	87.51
cd00570	71	GST_N_family Glutathione S-transferase (GST) famil	87.46
cd03037	71	GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) sub	87.44
TIGR02654	87	circ_KaiB circadian clock protein KaiB. Members of	87.28
cd03051	74	GST_N_GTT2_like GST_N family, Saccharomyces cerevi	87.21
cd03035	105	ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb s	86.22
PRK09301	103	circadian clock protein KaiB; Provisional	85.91
PF09673	113	TrbC_Ftype: Type-F conjugative transfer system pil	85.68
cd03059	73	GST_N_SspA GST_N family, Stringent starvation prot	85.4
PF13417	75	GST_N_3: Glutathione S-transferase, N-terminal dom	84.73
cd03036	111	ArsC_like Arsenate Reductase (ArsC) family, unknow	84.55
COG2761	225	FrnE Predicted dithiol-disulfide isomerase involve	84.44
cd03045	74	GST_N_Delta_Epsilon GST_N family, Class Delta and	83.76
COG3531	212	Predicted protein-disulfide isomerase [Posttransla	81.96
KOG4277	468	consensus Uncharacterized conserved protein, conta	81.93

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.1e-26  Score=200.52  Aligned_cols=155  Identities=35%  Similarity=0.662  Sum_probs=134.2

Q ss_pred             hcCCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCC-CCeEEEEEeCccchhHHHHcCCCCCC
Q 026412           20 ALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFP   98 (239)
Q Consensus        20 ~~~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~-~~v~~~~vd~~~~~~l~~~~~i~~~P   98 (239)
                      .....|..|+.+||+..+..+..++|.||||||+||+++.|+|++.|+.+..+ +.+.+++|||+.+.++|.+|+|++||
T Consensus        22 ~~~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyP  101 (493)
T KOG0190|consen   22 KAEEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYP  101 (493)
T ss_pred             CcccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCC
Confidence            34678999999999999999999999999999999999999999999998765 57999999999999999999999999


Q ss_pred             eEEEEeCCCcCccccCCCCCHHHHHHHHHHhhCCCCCCCCCcccccchhhhhhHHHHHHHhccchhHHHHHHHHHhh
Q 026412           99 TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERG  175 (239)
Q Consensus        99 t~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  175 (239)
                      |+.+|++|.. +..|.|+|+.+.++.|+.++.|++...........+.+..-+..+.+|+.+.......-+..+...
T Consensus       102 TlkiFrnG~~-~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~~~vig~F~d~~~~~~~~~~~a~~l  177 (493)
T KOG0190|consen  102 TLKIFRNGRS-AQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSKKDVVVIGFFKDLESLAESFFDAASKL  177 (493)
T ss_pred             eEEEEecCCc-ceeccCcccHHHHHHHHHhccCCCceecccHHHHHhhccCCceEEEEEecccccchHHHHHHHHhc
Confidence            9999999944 799999999999999999999999988888888788888877777888875443333434444443

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.93  E-value=3.2e-25  Score=158.75  Aligned_cols=103  Identities=17%  Similarity=0.321  Sum_probs=93.5

Q ss_pred             cCCCcEEcChhhHHHH---hcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHH-HHcCCCC
Q 026412           21 LADDVVVLTEDNFEKE---VGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLA-EKYGVSG   96 (239)
Q Consensus        21 ~~~~v~~l~~~~f~~~---~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~-~~~~i~~   96 (239)
                      ..+.+.++++++|++.   +.++++++|.||||||+||+.+.|.|+++++.++  +.+.+++|||+.+.++| ++|+|.+
T Consensus         7 ~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~--~~v~~~~Vd~d~~~~l~~~~~~I~~   84 (113)
T cd03006           7 QRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLS--DQVLFVAINCWWPQGKCRKQKHFFY   84 (113)
T ss_pred             CCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhc--CCeEEEEEECCCChHHHHHhcCCcc
Confidence            3578999999999987   4889999999999999999999999999999986  35899999999999999 5899999


Q ss_pred             CCeEEEEeCCCcCccccCCCCCHHHHHHHH
Q 026412           97 FPTLKFFPKGNKDGEEYGGGRDLEDFVSFI  126 (239)
Q Consensus        97 ~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l  126 (239)
                      +||+++|++| +.+.+|.|.++.+.|..|+
T Consensus        85 ~PTl~lf~~g-~~~~~y~G~~~~~~i~~~~  113 (113)
T cd03006          85 FPVIHLYYRS-RGPIEYKGPMRAPYMEKFV  113 (113)
T ss_pred             cCEEEEEECC-ccceEEeCCCCHHHHHhhC
Confidence            9999999877 5678999999999999874

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.92  E-value=2.1e-24  Score=154.31  Aligned_cols=103  Identities=35%  Similarity=0.652  Sum_probs=93.0

Q ss_pred             CcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccC----CCCeEEEEEeCccchhHHHHcCCCCCCe
Q 026412           24 DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTL----EDDVVVANLDADKYKDLAEKYGVSGFPT   99 (239)
Q Consensus        24 ~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~----~~~v~~~~vd~~~~~~l~~~~~i~~~Pt   99 (239)
                      .+.++++++|++.+.++++++|.||||||++|+++.|.|+++++.+..    .+.+.++.|||+.+++++++|+|+++||
T Consensus         2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt   81 (108)
T cd02996           2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPT   81 (108)
T ss_pred             ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCE
Confidence            578899999999998889999999999999999999999999987642    2358999999999999999999999999


Q ss_pred             EEEEeCCCcCccccCCCCCHHHHHHHH
Q 026412          100 LKFFPKGNKDGEEYGGGRDLEDFVSFI  126 (239)
Q Consensus       100 ~~~~~~g~~~~~~~~g~~~~~~l~~~l  126 (239)
                      +++|++|......|.|.++.+++.+||
T Consensus        82 l~~~~~g~~~~~~~~g~~~~~~l~~fi  108 (108)
T cd02996          82 LKLFRNGMMMKREYRGQRSVEALAEFV  108 (108)
T ss_pred             EEEEeCCcCcceecCCCCCHHHHHhhC
Confidence            999998854568899999999999985

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.92  E-value=3.4e-24  Score=151.40  Aligned_cols=99  Identities=31%  Similarity=0.666  Sum_probs=91.5

Q ss_pred             CcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEE
Q 026412           24 DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF  103 (239)
Q Consensus        24 ~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~  103 (239)
                      .+..++.++|++.+.++++++|.||+|||++|+.+.|.|+++++.++  +.+.++.|||++++.+|++|+|+++||+++|
T Consensus         2 ~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~   79 (101)
T cd03003           2 EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMD--GVIRIGAVNCGDDRMLCRSQGVNSYPSLYVF   79 (101)
T ss_pred             CeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhc--CceEEEEEeCCccHHHHHHcCCCccCEEEEE
Confidence            46789999999999888999999999999999999999999999986  4589999999999999999999999999999


Q ss_pred             eCCCcCccccCCCCCHHHHHHH
Q 026412          104 PKGNKDGEEYGGGRDLEDFVSF  125 (239)
Q Consensus       104 ~~g~~~~~~~~g~~~~~~l~~~  125 (239)
                      ++| .....|.|.++.+.+.+|
T Consensus        80 ~~g-~~~~~~~G~~~~~~l~~f  100 (101)
T cd03003          80 PSG-MNPEKYYGDRSKESLVKF  100 (101)
T ss_pred             cCC-CCcccCCCCCCHHHHHhh
Confidence            877 567889999999999887

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.91  E-value=4.7e-24  Score=151.43  Aligned_cols=101  Identities=33%  Similarity=0.722  Sum_probs=92.5

Q ss_pred             CcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEE
Q 026412           24 DVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF  102 (239)
Q Consensus        24 ~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~  102 (239)
                      .+.+++.++|++.+ +++++++|.||++||++|+.+.|.|+++++.+.  +.+.++.|||+++++++++|+|+++||+++
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~   79 (104)
T cd03004           2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALK--GKVKVGSVDCQKYESLCQQANIRAYPTIRL   79 (104)
T ss_pred             cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence            56789999999998 667899999999999999999999999999985  469999999999999999999999999999


Q ss_pred             EeCCCcCccccCCCCC-HHHHHHHH
Q 026412          103 FPKGNKDGEEYGGGRD-LEDFVSFI  126 (239)
Q Consensus       103 ~~~g~~~~~~~~g~~~-~~~l~~~l  126 (239)
                      |++|++...+|.|..+ .+++.+||
T Consensus        80 ~~~g~~~~~~~~G~~~~~~~l~~~i  104 (104)
T cd03004          80 YPGNASKYHSYNGWHRDADSILEFI  104 (104)
T ss_pred             EcCCCCCceEccCCCCCHHHHHhhC
Confidence            9998677889999987 99999885

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.91  E-value=3.6e-23  Score=164.69  Aligned_cols=109  Identities=39%  Similarity=0.731  Sum_probs=95.9

Q ss_pred             CCCcEEcChhhHHHHhcC-----CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCC
Q 026412           22 ADDVVVLTEDNFEKEVGQ-----DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG   96 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~-----~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~   96 (239)
                      ...+.++++++|++.+..     +++++|.||+|||+||+.+.|.|+++++.++  +.+.++.+|++++++++++|+|++
T Consensus        29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~--~~v~~~~VD~~~~~~l~~~~~I~~  106 (224)
T PTZ00443         29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALK--GQVNVADLDATRALNLAKRFAIKG  106 (224)
T ss_pred             CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcC--CCeEEEEecCcccHHHHHHcCCCc
Confidence            456899999999998832     5799999999999999999999999999986  458999999999999999999999


Q ss_pred             CCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhCCC
Q 026412           97 FPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS  133 (239)
Q Consensus        97 ~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~  133 (239)
                      +||+++|++| +....+.|.++.+++.+|+.+.....
T Consensus       107 ~PTl~~f~~G-~~v~~~~G~~s~e~L~~fi~~~~~~~  142 (224)
T PTZ00443        107 YPTLLLFDKG-KMYQYEGGDRSTEKLAAFALGDFKKA  142 (224)
T ss_pred             CCEEEEEECC-EEEEeeCCCCCHHHHHHHHHHHHHhh
Confidence            9999999987 44455578899999999999887543

>PF07749 ERp29: Endoplasmic reticulum protein ERp29, C-terminal domain; InterPro: IPR011679 ERp29 is a ubiquitously expressed endoplasmic reticulum protein found in mammals []

Probab=99.91  E-value=4.6e-24  Score=147.51  Aligned_cols=95  Identities=41%  Similarity=0.667  Sum_probs=85.7

Q ss_pred             chhhhhhHHHHHHHhccchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHhhhhhCCCCchHHHHHHHHHHHhccCChhh
Q 026412          145 GIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAK  224 (239)
Q Consensus       145 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~k~~~~~~~~~~~e~~rl~~~l~~~~~~~~  224 (239)
                      |+++++|.++..|+.+.++++.+++++++.....+++....+++||+++|+||+++|++|+++|++||+++|+++++++|
T Consensus         1 G~i~~lD~la~~f~~~~~~~~~~i~~~~~~~~~~l~~~~~~~a~~Yvkvm~Ki~~~g~~fv~~E~~RL~~lL~~~l~~~K   80 (95)
T PF07749_consen    1 GRIEELDELAAEFVAASDDEREEILEEAKAAAEKLEDSAAKYAKYYVKVMEKIIEKGEEFVAKEIARLERLLEGKLSPEK   80 (95)
T ss_dssp             T--HHHHHHHHHHHHS-CHHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHHHHHHSGTHHHHHHHHHHHHHHHSSS-HHH
T ss_pred             CchHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhccchhhHhHHHHHHHHHHHHHccchHHHHHHHHHHHHHhccCCHHH
Confidence            78999999999999988889999999999999888877678999999999999999999999999999999998899999


Q ss_pred             hhHHHHhhhhhcccC
Q 026412          225 ADEFVLKKNILSTFT  239 (239)
Q Consensus       225 ~~~~~~r~nil~~f~  239 (239)
                      +|+|+.|+|||++|+
T Consensus        81 ~del~~R~NIL~~F~   95 (95)
T PF07749_consen   81 KDELQKRLNILSSFQ   95 (95)
T ss_dssp             HHHHHHHHHHHHCTS
T ss_pred             HHHHHHHHHHHHHcC
Confidence            999999999999996

This protein is found associated with an N-terminal thioredoxin-like domain (IPR006662 from INTERPRO), which is homologous to the domain of human protein disulphide isomerase (PDI). ERp29 may help mediate the chaperone function of PDI. The C-terminal Erp29 domain has a 5-helical bundle fold. ERp29 is thought to form part of the thyroglobulin folding complex []. ; GO: 0005783 endoplasmic reticulum; PDB: 2QC7_B 1G7D_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_A.

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.6e-23  Score=153.11  Aligned_cols=105  Identities=30%  Similarity=0.563  Sum_probs=96.9

Q ss_pred             CcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEE
Q 026412           24 DVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF  102 (239)
Q Consensus        24 ~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~  102 (239)
                      .+..++..+|++.+ +++.||+|.|||+||+||+.+.|.+++++..+.  +.+.+++||.|++.+++.+|+|..+||+++
T Consensus        44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~--g~~k~~kvdtD~~~ela~~Y~I~avPtvlv  121 (150)
T KOG0910|consen   44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYA--GKFKLYKVDTDEHPELAEDYEISAVPTVLV  121 (150)
T ss_pred             cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhc--CeEEEEEEccccccchHhhcceeeeeEEEE
Confidence            46678899999988 889999999999999999999999999999985  689999999999999999999999999999


Q ss_pred             EeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412          103 FPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus       103 ~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      |++| +...++.|..+.+.+.+||++.++
T Consensus       122 fknG-e~~d~~vG~~~~~~l~~~i~k~l~  149 (150)
T KOG0910|consen  122 FKNG-EKVDRFVGAVPKEQLRSLIKKFLK  149 (150)
T ss_pred             EECC-EEeeeecccCCHHHHHHHHHHHhc
Confidence            9998 566889999999999999998753

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.90  E-value=5.8e-23  Score=145.17  Aligned_cols=102  Identities=43%  Similarity=0.854  Sum_probs=94.4

Q ss_pred             cEEcChhhHHHHhcC-CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEE
Q 026412           25 VVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF  103 (239)
Q Consensus        25 v~~l~~~~f~~~~~~-~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~  103 (239)
                      |..+++++|++.+.+ +++++|.||++||++|+.+.|.|.++++.+..  ++.++.||+++++.++++|+|.++|++++|
T Consensus         1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~   78 (103)
T PF00085_consen    1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD--NVKFAKVDCDENKELCKKYGVKSVPTIIFF   78 (103)
T ss_dssp             SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTSHHHHHHTTCSSSSEEEEE
T ss_pred             CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc--ccccchhhhhccchhhhccCCCCCCEEEEE
Confidence            467899999999965 89999999999999999999999999999874  899999999999999999999999999999


Q ss_pred             eCCCcCccccCCCCCHHHHHHHHHHh
Q 026412          104 PKGNKDGEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus       104 ~~g~~~~~~~~g~~~~~~l~~~l~~~  129 (239)
                      .+| +...+|.|.++.+.|.+||+++
T Consensus        79 ~~g-~~~~~~~g~~~~~~l~~~i~~~  103 (103)
T PF00085_consen   79 KNG-KEVKRYNGPRNAESLIEFIEKH  103 (103)
T ss_dssp             ETT-EEEEEEESSSSHHHHHHHHHHH
T ss_pred             ECC-cEEEEEECCCCHHHHHHHHHcC
Confidence            988 5556999999999999999874

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=99.90  E-value=3.3e-23  Score=147.64  Aligned_cols=100  Identities=22%  Similarity=0.416  Sum_probs=87.4

Q ss_pred             CcEEcChhhHHHHhcCCCcEEEEEEC--CCCh---HHhhHhHHHHHHHHHccCCCCeEEEEEeCc-----cchhHHHHcC
Q 026412           24 DVVVLTEDNFEKEVGQDRGALVEFYA--PWCG---HCKNLAPTYEKVAAAFTLEDDVVVANLDAD-----KYKDLAEKYG   93 (239)
Q Consensus        24 ~v~~l~~~~f~~~~~~~k~vlV~F~a--~wC~---~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~-----~~~~l~~~~~   93 (239)
                      +++.|++.||++.+.+++.+||.|||  |||+   ||+++.|++.+.+.      ++.+++|||+     ++.+||++|+
T Consensus         2 g~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~------~v~lakVd~~d~~~~~~~~L~~~y~   75 (116)
T cd03007           2 GCVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD------DLLVAEVGIKDYGEKLNMELGERYK   75 (116)
T ss_pred             CeeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC------ceEEEEEecccccchhhHHHHHHhC
Confidence            57899999999999999999999999  8888   77777777765543      4889999994     5788999999


Q ss_pred             CC--CCCeEEEEeCCC-cCccccCCC-CCHHHHHHHHHHh
Q 026412           94 VS--GFPTLKFFPKGN-KDGEEYGGG-RDLEDFVSFINEK  129 (239)
Q Consensus        94 i~--~~Pt~~~~~~g~-~~~~~~~g~-~~~~~l~~~l~~~  129 (239)
                      |+  +|||+++|++|+ ..+..|.|+ |+.+.|++||+++
T Consensus        76 I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~  115 (116)
T cd03007          76 LDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN  115 (116)
T ss_pred             CCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence            99  999999999883 467899997 9999999999875

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>PTZ00102 disulphide isomerase; Provisional

Probab=99.89  E-value=6.2e-23  Score=182.63  Aligned_cols=114  Identities=43%  Similarity=0.848  Sum_probs=102.5

Q ss_pred             CCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCC-CCeEEEEEeCccchhHHHHcCCCCCCeEE
Q 026412           23 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFPTLK  101 (239)
Q Consensus        23 ~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~-~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  101 (239)
                      ..+..++.++|+..+.+++.++|.||||||++|+++.|.|.++++.+... .++.++.|||+.+.++|++|+|.++||++
T Consensus        32 ~~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~  111 (477)
T PTZ00102         32 EHVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIK  111 (477)
T ss_pred             CCcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEE
Confidence            56789999999999988899999999999999999999999999887543 47999999999999999999999999999


Q ss_pred             EEeCCCcCccccCCCCCHHHHHHHHHHhhCCCCCCCC
Q 026412          102 FFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKG  138 (239)
Q Consensus       102 ~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~  138 (239)
                      +|++|+.  ..|.|.++.+.+.+|+.+.+++......
T Consensus       112 ~~~~g~~--~~y~g~~~~~~l~~~l~~~~~~~~~~i~  146 (477)
T PTZ00102        112 FFNKGNP--VNYSGGRTADGIVSWIKKLTGPAVTEVE  146 (477)
T ss_pred             EEECCce--EEecCCCCHHHHHHHHHHhhCCCceeec
Confidence            9998843  3899999999999999999987765544

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.89  E-value=2e-22  Score=144.17  Aligned_cols=100  Identities=50%  Similarity=0.865  Sum_probs=91.1

Q ss_pred             cEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc--chhHHHHcCCCCCCeEE
Q 026412           25 VVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--YKDLAEKYGVSGFPTLK  101 (239)
Q Consensus        25 v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~~  101 (239)
                      +.++++++|++.+ +++++++|.||++||++|+++.|.++++++.+.  +.+.++.+||+.  +++++++|+|+++||++
T Consensus         2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~--~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~   79 (109)
T cd03002           2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELD--GLVQVAAVDCDEDKNKPLCGKYGVQGFPTLK   79 (109)
T ss_pred             eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhc--CCceEEEEecCccccHHHHHHcCCCcCCEEE
Confidence            6789999999998 667889999999999999999999999999986  458899999998  88999999999999999


Q ss_pred             EEeCCC----cCccccCCCCCHHHHHHHH
Q 026412          102 FFPKGN----KDGEEYGGGRDLEDFVSFI  126 (239)
Q Consensus       102 ~~~~g~----~~~~~~~g~~~~~~l~~~l  126 (239)
                      +|++|+    .....|.|.++.+++.+||
T Consensus        80 ~~~~~~~~~~~~~~~~~G~~~~~~l~~fi  108 (109)
T cd03002          80 VFRPPKKASKHAVEDYNGERSAKAIVDFV  108 (109)
T ss_pred             EEeCCCcccccccccccCccCHHHHHHHh
Confidence            999886    3568899999999999997

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.89  E-value=2.4e-22  Score=141.91  Aligned_cols=100  Identities=35%  Similarity=0.629  Sum_probs=88.7

Q ss_pred             CcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEE
Q 026412           24 DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF  103 (239)
Q Consensus        24 ~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~  103 (239)
                      .+..++.++|++++.+ + ++|.|||+||++|+.+.|.|+++++.++ ..++.++.||+++++.++++|+|.++||+++|
T Consensus         2 ~v~~l~~~~f~~~~~~-~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~-~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~   78 (101)
T cd02994           2 NVVELTDSNWTLVLEG-E-WMIEFYAPWCPACQQLQPEWEEFADWSD-DLGINVAKVDVTQEPGLSGRFFVTALPTIYHA   78 (101)
T ss_pred             ceEEcChhhHHHHhCC-C-EEEEEECCCCHHHHHHhHHHHHHHHhhc-cCCeEEEEEEccCCHhHHHHcCCcccCEEEEe
Confidence            5788999999998843 3 7899999999999999999999998764 34699999999999999999999999999999


Q ss_pred             eCCCcCccccCCCCCHHHHHHHHHH
Q 026412          104 PKGNKDGEEYGGGRDLEDFVSFINE  128 (239)
Q Consensus       104 ~~g~~~~~~~~g~~~~~~l~~~l~~  128 (239)
                      ++| . ...|.|.++.+++.+|+++
T Consensus        79 ~~g-~-~~~~~G~~~~~~l~~~i~~  101 (101)
T cd02994          79 KDG-V-FRRYQGPRDKEDLISFIEE  101 (101)
T ss_pred             CCC-C-EEEecCCCCHHHHHHHHhC
Confidence            877 3 4789999999999999863

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.89  E-value=1.3e-22  Score=146.26  Aligned_cols=106  Identities=20%  Similarity=0.231  Sum_probs=92.3

Q ss_pred             CCcEEcChhhHHHHh-cCCCcEEEEEECCCChH--Hh--hHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCC
Q 026412           23 DDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGH--CK--NLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGF   97 (239)
Q Consensus        23 ~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~--C~--~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~   97 (239)
                      ..+..++++||++.+ +++.++++.||++||++  |+  .+.|.+.+++.++-..+++.+++||++++++++++|+|+++
T Consensus         9 ~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~i   88 (120)
T cd03065           9 DRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEE   88 (120)
T ss_pred             cceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCccc
Confidence            467889999999999 66668888899999976  99  88899999998873345799999999999999999999999


Q ss_pred             CeEEEEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412           98 PTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus        98 Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      ||+++|++|. .. .|.|.++.+.+.+||.+..
T Consensus        89 PTl~lfk~G~-~v-~~~G~~~~~~l~~~l~~~~  119 (120)
T cd03065          89 DSIYVFKDDE-VI-EYDGEFAADTLVEFLLDLI  119 (120)
T ss_pred             cEEEEEECCE-EE-EeeCCCCHHHHHHHHHHHh
Confidence            9999999884 44 4999999999999998753

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.88  E-value=3.9e-22  Score=142.80  Aligned_cols=102  Identities=31%  Similarity=0.701  Sum_probs=90.6

Q ss_pred             CcEEcChhhHHHHh---cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-chhHHH-HcCCCCCC
Q 026412           24 DVVVLTEDNFEKEV---GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-YKDLAE-KYGVSGFP   98 (239)
Q Consensus        24 ~v~~l~~~~f~~~~---~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-~~~l~~-~~~i~~~P   98 (239)
                      .|.+++.++|++++   .++++++|.||++||+||+++.|.|.++++.++ ..++.++.||++. +..++. .|+++++|
T Consensus         2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~-~~~~~~~~vd~d~~~~~~~~~~~~v~~~P   80 (109)
T cd02993           2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLA-GSNVKVAKFNADGEQREFAKEELQLKSFP   80 (109)
T ss_pred             cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhc-cCCeEEEEEECCccchhhHHhhcCCCcCC
Confidence            57889999999998   357899999999999999999999999999987 3359999999997 577886 59999999


Q ss_pred             eEEEEeCCCcCccccCCC-CCHHHHHHHH
Q 026412           99 TLKFFPKGNKDGEEYGGG-RDLEDFVSFI  126 (239)
Q Consensus        99 t~~~~~~g~~~~~~~~g~-~~~~~l~~~l  126 (239)
                      |+++|++|+..+..|.|. ++.++|+.||
T Consensus        81 ti~~f~~~~~~~~~y~g~~~~~~~l~~f~  109 (109)
T cd02993          81 TILFFPKNSRQPIKYPSEQRDVDSLLMFV  109 (109)
T ss_pred             EEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence            999999887778899995 8999999985

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.88  E-value=4.6e-22  Score=140.49  Aligned_cols=100  Identities=41%  Similarity=0.892  Sum_probs=90.0

Q ss_pred             cEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccC-CCCeEEEEEeCccchhHHHHcCCCCCCeEEEE
Q 026412           25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTL-EDDVVVANLDADKYKDLAEKYGVSGFPTLKFF  103 (239)
Q Consensus        25 v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~-~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~  103 (239)
                      +..+++++|++.+.++ +++|.||++||++|+.+.|.+.++++.+.. .+.+.++.|||+.+..++++|+|.++||+++|
T Consensus         2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~   80 (102)
T cd03005           2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLF   80 (102)
T ss_pred             eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEE
Confidence            5789999999999655 599999999999999999999999999865 34799999999999999999999999999999


Q ss_pred             eCCCcCccccCCCCCHHHHHHHH
Q 026412          104 PKGNKDGEEYGGGRDLEDFVSFI  126 (239)
Q Consensus       104 ~~g~~~~~~~~g~~~~~~l~~~l  126 (239)
                      ++| ....+|.|.++.+++.+||
T Consensus        81 ~~g-~~~~~~~G~~~~~~l~~~i  102 (102)
T cd03005          81 KDG-EKVDKYKGTRDLDSLKEFV  102 (102)
T ss_pred             eCC-CeeeEeeCCCCHHHHHhhC
Confidence            877 4667899999999998885

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.88  E-value=6.5e-22  Score=139.57  Aligned_cols=101  Identities=60%  Similarity=1.089  Sum_probs=93.6

Q ss_pred             cChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCC
Q 026412           28 LTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN  107 (239)
Q Consensus        28 l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~  107 (239)
                      |++++|++.+.++++++|.||++||++|+.+.|.|+++++.+...+++.++.+|++.++.++++|+|.++|++++|++|+
T Consensus         1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~   80 (102)
T TIGR01126         1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGK   80 (102)
T ss_pred             CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCC
Confidence            57889999998899999999999999999999999999999876557999999999999999999999999999999886


Q ss_pred             cCccccCCCCCHHHHHHHHHHh
Q 026412          108 KDGEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus       108 ~~~~~~~g~~~~~~l~~~l~~~  129 (239)
                      . +..|.|..+.+++..||.++
T Consensus        81 ~-~~~~~g~~~~~~l~~~i~~~  101 (102)
T TIGR01126        81 K-PVDYEGGRDLEAIVEFVNEK  101 (102)
T ss_pred             c-ceeecCCCCHHHHHHHHHhc
Confidence            5 78999999999999999864

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.88  E-value=1.2e-21  Score=138.53  Aligned_cols=100  Identities=52%  Similarity=0.900  Sum_probs=91.3

Q ss_pred             cEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEE
Q 026412           25 VVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF  103 (239)
Q Consensus        25 v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~  103 (239)
                      +.++++.+|++.+ .++++++|.||++||++|+++.|.|.++++.+.  +.+.++.+|++++++++++|+|+++|++++|
T Consensus         2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~--~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~   79 (103)
T cd03001           2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALK--GIVKVGAVDADVHQSLAQQYGVRGFPTIKVF   79 (103)
T ss_pred             eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhc--CCceEEEEECcchHHHHHHCCCCccCEEEEE
Confidence            5788999999998 556679999999999999999999999999886  4699999999999999999999999999999


Q ss_pred             eCCCcCccccCCCCCHHHHHHHH
Q 026412          104 PKGNKDGEEYGGGRDLEDFVSFI  126 (239)
Q Consensus       104 ~~g~~~~~~~~g~~~~~~l~~~l  126 (239)
                      ++|......|.|+++.+++.+|+
T Consensus        80 ~~~~~~~~~~~g~~~~~~l~~~~  102 (103)
T cd03001          80 GAGKNSPQDYQGGRTAKAIVSAA  102 (103)
T ss_pred             CCCCcceeecCCCCCHHHHHHHh
Confidence            98866778999999999999996

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.88  E-value=1e-21  Score=139.32  Aligned_cols=102  Identities=70%  Similarity=1.225  Sum_probs=93.0

Q ss_pred             cEEcChhhHHHHhc-CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-chhHHHHcCCCCCCeEEE
Q 026412           25 VVVLTEDNFEKEVG-QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-YKDLAEKYGVSGFPTLKF  102 (239)
Q Consensus        25 v~~l~~~~f~~~~~-~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-~~~l~~~~~i~~~Pt~~~  102 (239)
                      +.++++++|++.+. .+++++|.||++||++|+++.|.+.++++.++..+++.++.+|++. +++++++|+|.++|++++
T Consensus         2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~   81 (105)
T cd02998           2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF   81 (105)
T ss_pred             eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence            57889999999884 5569999999999999999999999999998755679999999999 999999999999999999


Q ss_pred             EeCCCcCccccCCCCCHHHHHHHH
Q 026412          103 FPKGNKDGEEYGGGRDLEDFVSFI  126 (239)
Q Consensus       103 ~~~g~~~~~~~~g~~~~~~l~~~l  126 (239)
                      |.+|+.....|.|.++.+++.+||
T Consensus        82 ~~~~~~~~~~~~g~~~~~~l~~~i  105 (105)
T cd02998          82 FPKGSTEPVKYEGGRDLEDLVKFV  105 (105)
T ss_pred             EeCCCCCccccCCccCHHHHHhhC
Confidence            998877788899999999999885

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd00238 ERp29c ERp29 and ERp38, C-terminal domain; composed of the protein disulfide isomerase (PDI)-like proteins ERp29 and ERp38

Probab=99.88  E-value=3.1e-22  Score=137.22  Aligned_cols=91  Identities=43%  Similarity=0.724  Sum_probs=84.7

Q ss_pred             hhhhHHHHHHHhccchhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHhhhhhCCCCchHHHHHHHHHHHhcc-CChhhhh
Q 026412          148 ASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKS-ISAAKAD  226 (239)
Q Consensus       148 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~k~~~~~~~~~~~e~~rl~~~l~~~-~~~~~~~  226 (239)
                      +++|.++..|+.++++++.+++.++++....+++.+..+++||+++|+|+.++|.+|+++|++||+++|+++ ++++|+|
T Consensus         2 ~~lD~la~~f~~~~~~~~~~~l~~~~~~~~~l~~~~~~~a~~Y~kvm~Ki~~kg~~yv~~E~~RL~~iL~~~~ls~~K~d   81 (93)
T cd00238           2 EELDELAKEFVDASDEERKELLEKVKEAVEKLKEAEAKYAKYYVKVMEKILEKGEDYVEKELARLERLLEKKGLAPEKAD   81 (93)
T ss_pred             hhHHHHHHHHhccchhHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHhcCCCCHHHHH
Confidence            578999999998877889999999999888888667789999999999999999999999999999999987 6999999


Q ss_pred             HHHHhhhhhccc
Q 026412          227 EFVLKKNILSTF  238 (239)
Q Consensus       227 ~~~~r~nil~~f  238 (239)
                      +|+.|+|||++|
T Consensus        82 el~~R~NIL~~F   93 (93)
T cd00238          82 ELTRRLNILRSF   93 (93)
T ss_pred             HHHHHHHHHhcC
Confidence            999999999998

ERp29 (also called ERp28) is a ubiquitous endoplasmic reticulum (ER)-resident protein expressed in high levels in secretory cells. It contains a redox inactive TRX-like domain at the N-terminus. The expression profile of ERp29 suggests a role in secretory protein production, distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex and is essential in regulating the secretion of thyroglobulin. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. ERp38 is a P5-like protein, first isolated from alfalfa (the cDNA clone was named G1), which contains two redox active TRX domains at the N-terminus, like human P5.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.87  E-value=6e-22  Score=139.43  Aligned_cols=90  Identities=24%  Similarity=0.537  Sum_probs=80.4

Q ss_pred             hHHHHh--cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc-cchhHHHHcCCCCCCeEEEEeCCCc
Q 026412           32 NFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-KYKDLAEKYGVSGFPTLKFFPKGNK  108 (239)
Q Consensus        32 ~f~~~~--~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~-~~~~l~~~~~i~~~Pt~~~~~~g~~  108 (239)
                      ++..++  .++++++|.|||+||++|+.+.|.|+++++.++   ++.++.||++ ++++++++|+|.++||+++|++|  
T Consensus         8 ~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~---~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g--   82 (100)
T cd02999           8 IALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP---QIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST--   82 (100)
T ss_pred             HHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc---cCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC--
Confidence            344444  678999999999999999999999999999985   4788999998 78999999999999999999877  


Q ss_pred             CccccCCCCCHHHHHHHH
Q 026412          109 DGEEYGGGRDLEDFVSFI  126 (239)
Q Consensus       109 ~~~~~~g~~~~~~l~~~l  126 (239)
                      ...+|.|.++.+.+.+|+
T Consensus        83 ~~~~~~G~~~~~~l~~f~  100 (100)
T cd02999          83 PRVRYNGTRTLDSLAAFY  100 (100)
T ss_pred             ceeEecCCCCHHHHHhhC
Confidence            578999999999999985

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.87  E-value=1.4e-21  Score=138.44  Aligned_cols=102  Identities=48%  Similarity=0.951  Sum_probs=91.3

Q ss_pred             CcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEE
Q 026412           24 DVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF  102 (239)
Q Consensus        24 ~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~  102 (239)
                      .+..+++++|++.+ +.+++++|.||++||++|+.+.|.|.++++.++...++.++.+|++.+ +++..+++.++|++++
T Consensus         1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~   79 (104)
T cd02995           1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILF   79 (104)
T ss_pred             CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEE
Confidence            36789999999998 556899999999999999999999999999987656799999999987 6888999999999999


Q ss_pred             EeCCC-cCccccCCCCCHHHHHHHH
Q 026412          103 FPKGN-KDGEEYGGGRDLEDFVSFI  126 (239)
Q Consensus       103 ~~~g~-~~~~~~~g~~~~~~l~~~l  126 (239)
                      |++|+ .....|.|.++.+.+.+||
T Consensus        80 ~~~~~~~~~~~~~g~~~~~~l~~fi  104 (104)
T cd02995          80 FPAGDKSNPIKYEGDRTLEDLIKFI  104 (104)
T ss_pred             EcCCCcCCceEccCCcCHHHHHhhC
Confidence            99886 3577899999999999985

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.87  E-value=2e-21  Score=137.67  Aligned_cols=101  Identities=44%  Similarity=0.853  Sum_probs=91.8

Q ss_pred             cEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc--chhHHHHcCCCCCCeEEE
Q 026412           25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--YKDLAEKYGVSGFPTLKF  102 (239)
Q Consensus        25 v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~~~  102 (239)
                      +..+++.+|++.+.++++++|.||++||++|+.+.|.+.++++.+...+.+.++.+|++.  ++.++++|+|+++||+++
T Consensus         2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~   81 (104)
T cd02997           2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKY   81 (104)
T ss_pred             eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEE
Confidence            567889999999988889999999999999999999999999998755678999999997  899999999999999999


Q ss_pred             EeCCCcCccccCCCCCHHHHHHHH
Q 026412          103 FPKGNKDGEEYGGGRDLEDFVSFI  126 (239)
Q Consensus       103 ~~~g~~~~~~~~g~~~~~~l~~~l  126 (239)
                      |++| +....|.|..+.+.+.+||
T Consensus        82 ~~~g-~~~~~~~g~~~~~~l~~~l  104 (104)
T cd02997          82 FENG-KFVEKYEGERTAEDIIEFM  104 (104)
T ss_pred             EeCC-CeeEEeCCCCCHHHHHhhC
Confidence            9887 5677899999999999885

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=1.7e-21  Score=157.07  Aligned_cols=108  Identities=33%  Similarity=0.654  Sum_probs=99.5

Q ss_pred             CCCcEEcChhhHHHHh---cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCC
Q 026412           22 ADDVVVLTEDNFEKEV---GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP   98 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~---~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P   98 (239)
                      ...+.++|..||.+.+   ...+||+|+||+|||++|+.+.|.+++++..++  +.+.+++||||.+++++.+|||+++|
T Consensus        22 a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~--G~f~LakvN~D~~p~vAaqfgiqsIP   99 (304)
T COG3118          22 APGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYK--GKFKLAKVNCDAEPMVAAQFGVQSIP   99 (304)
T ss_pred             cccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhC--CceEEEEecCCcchhHHHHhCcCcCC
Confidence            4569999999999998   445699999999999999999999999999986  68999999999999999999999999


Q ss_pred             eEEEEeCCCcCccccCCCCCHHHHHHHHHHhhCC
Q 026412           99 TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGT  132 (239)
Q Consensus        99 t~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~  132 (239)
                      |++.|.+| ..+.-|.|....+.+.+|+.+..+.
T Consensus       100 tV~af~dG-qpVdgF~G~qPesqlr~~ld~~~~~  132 (304)
T COG3118         100 TVYAFKDG-QPVDGFQGAQPESQLRQFLDKVLPA  132 (304)
T ss_pred             eEEEeeCC-cCccccCCCCcHHHHHHHHHHhcCh
Confidence            99999998 5678899999999999999998876

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.87  E-value=1.6e-21  Score=140.01  Aligned_cols=100  Identities=21%  Similarity=0.374  Sum_probs=88.5

Q ss_pred             EcChhhHHHHh---cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEE
Q 026412           27 VLTEDNFEKEV---GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF  103 (239)
Q Consensus        27 ~l~~~~f~~~~---~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~  103 (239)
                      .++..+|++.+   ..+++++|.||+|||++|+.+.|.++++++.+.. .++.++.||++.++.++++|+|.++||+++|
T Consensus         8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~-~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~   86 (111)
T cd02963           8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEP-LGVGIATVNAGHERRLARKLGAHSVPAIVGI   86 (111)
T ss_pred             eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHh-cCceEEEEeccccHHHHHHcCCccCCEEEEE
Confidence            45778898655   3689999999999999999999999999999863 2589999999999999999999999999999


Q ss_pred             eCCCcCccccCCCCCHHHHHHHHHH
Q 026412          104 PKGNKDGEEYGGGRDLEDFVSFINE  128 (239)
Q Consensus       104 ~~g~~~~~~~~g~~~~~~l~~~l~~  128 (239)
                      ++| +....+.|..+.+.+.+||.+
T Consensus        87 ~~g-~~~~~~~G~~~~~~l~~~i~~  110 (111)
T cd02963          87 ING-QVTFYHDSSFTKQHVVDFVRK  110 (111)
T ss_pred             ECC-EEEEEecCCCCHHHHHHHHhc
Confidence            877 566777899999999999975

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>PRK09381 trxA thioredoxin; Provisional

Probab=99.86  E-value=7e-21  Score=136.25  Aligned_cols=106  Identities=33%  Similarity=0.693  Sum_probs=94.9

Q ss_pred             CCCcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeE
Q 026412           22 ADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL  100 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  100 (239)
                      +..+..+++++|.+.+ +.+++++|.||++||++|+.+.|.++++++.+.  +.+.++.+|++.++.++++|++.++||+
T Consensus         2 ~~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   79 (109)
T PRK09381          2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNPGTAPKYGIRGIPTL   79 (109)
T ss_pred             CCcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhC--CCcEEEEEECCCChhHHHhCCCCcCCEE
Confidence            3568889999999865 778999999999999999999999999999986  3689999999999999999999999999


Q ss_pred             EEEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412          101 KFFPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus       101 ~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      ++|++| +...++.|..+.+++.+||...+
T Consensus        80 ~~~~~G-~~~~~~~G~~~~~~l~~~i~~~~  108 (109)
T PRK09381         80 LLFKNG-EVAATKVGALSKGQLKEFLDANL  108 (109)
T ss_pred             EEEeCC-eEEEEecCCCCHHHHHHHHHHhc
Confidence            999876 56677889999999999998764

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.86  E-value=3.8e-21  Score=134.39  Aligned_cols=94  Identities=24%  Similarity=0.545  Sum_probs=83.6

Q ss_pred             hhHHHHh-cC-CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCc
Q 026412           31 DNFEKEV-GQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK  108 (239)
Q Consensus        31 ~~f~~~~-~~-~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~  108 (239)
                      ++|++.+ ++ +++++|.||++||++|+.+.|.++++++.++  +.+.++.||++.+++++++|+|.++|++++|++| +
T Consensus         1 ~~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~--~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g-~   77 (96)
T cd02956           1 QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQ--GQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAG-Q   77 (96)
T ss_pred             CChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhC--CcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCC-E
Confidence            3677777 34 6799999999999999999999999999986  3588999999999999999999999999999866 5


Q ss_pred             CccccCCCCCHHHHHHHHH
Q 026412          109 DGEEYGGGRDLEDFVSFIN  127 (239)
Q Consensus       109 ~~~~~~g~~~~~~l~~~l~  127 (239)
                      ....+.|..+.+++.+||+
T Consensus        78 ~~~~~~g~~~~~~l~~~l~   96 (96)
T cd02956          78 PVDGFQGAQPEEQLRQMLD   96 (96)
T ss_pred             EeeeecCCCCHHHHHHHhC
Confidence            6678999999999999873

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>PHA02278 thioredoxin-like protein

Probab=99.86  E-value=4.8e-21  Score=134.99  Aligned_cols=94  Identities=13%  Similarity=0.203  Sum_probs=82.1

Q ss_pred             ChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc----hhHHHHcCCCCCCeEEEEe
Q 026412           29 TEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY----KDLAEKYGVSGFPTLKFFP  104 (239)
Q Consensus        29 ~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~Pt~~~~~  104 (239)
                      +-++|.+.+.++++++|.|||+||++|+.+.|.++++++.+.  ..+.++.||++.+    ++++++|+|.++||+++|+
T Consensus         3 ~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~--~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk   80 (103)
T PHA02278          3 SLVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGD--IKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYK   80 (103)
T ss_pred             CHHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhc--CCceEEEEECCccccccHHHHHHCCCccccEEEEEE
Confidence            356888988889999999999999999999999999998753  3467889999865    6899999999999999999


Q ss_pred             CCCcCccccCCCCCHHHHHHH
Q 026412          105 KGNKDGEEYGGGRDLEDFVSF  125 (239)
Q Consensus       105 ~g~~~~~~~~g~~~~~~l~~~  125 (239)
                      +| +...++.|..+.+.+.++
T Consensus        81 ~G-~~v~~~~G~~~~~~l~~~  100 (103)
T PHA02278         81 DG-QLVKKYEDQVTPMQLQEL  100 (103)
T ss_pred             CC-EEEEEEeCCCCHHHHHhh
Confidence            87 677888998888888765

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=2e-21  Score=168.12  Aligned_cols=107  Identities=44%  Similarity=0.855  Sum_probs=97.3

Q ss_pred             CCcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE
Q 026412           23 DDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  101 (239)
Q Consensus        23 ~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  101 (239)
                      .+|..+..+||+.++ +.+|.|+|.||||||+||+++.|.|+++|+.++++++++++++|.+.|.  .....++++|||+
T Consensus       366 ~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd--~~~~~~~~fPTI~  443 (493)
T KOG0190|consen  366 SPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND--VPSLKVDGFPTIL  443 (493)
T ss_pred             CCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc--CccccccccceEE
Confidence            468889999999999 8899999999999999999999999999999999889999999999775  3456788899999


Q ss_pred             EEeCCCc-CccccCCCCCHHHHHHHHHHhhC
Q 026412          102 FFPKGNK-DGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus       102 ~~~~g~~-~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      +|+.|++ .+..|.|.|+.++|..|+.+..+
T Consensus       444 ~~pag~k~~pv~y~g~R~le~~~~fi~~~a~  474 (493)
T KOG0190|consen  444 FFPAGHKSNPVIYNGDRTLEDLKKFIKKSAT  474 (493)
T ss_pred             EecCCCCCCCcccCCCcchHHHHhhhccCCC
Confidence            9999875 58999999999999999987654

>PRK10996 thioredoxin 2; Provisional

Probab=99.85  E-value=1.2e-20  Score=140.74  Aligned_cols=105  Identities=28%  Similarity=0.623  Sum_probs=95.6

Q ss_pred             CCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE
Q 026412           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  101 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  101 (239)
                      ...+..++..+|++.+.++++++|.||++||++|+.+.|.+.++++.+.  +++.++.+|++++++++++|+|.++|+++
T Consensus        34 ~~~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~--~~v~~~~vd~~~~~~l~~~~~V~~~Ptli  111 (139)
T PRK10996         34 DGEVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERS--GKVRFVKVNTEAERELSARFRIRSIPTIM  111 (139)
T ss_pred             CCCCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhC--CCeEEEEEeCCCCHHHHHhcCCCccCEEE
Confidence            4567789999999999889999999999999999999999999998875  46999999999999999999999999999


Q ss_pred             EEeCCCcCccccCCCCCHHHHHHHHHHh
Q 026412          102 FFPKGNKDGEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus       102 ~~~~g~~~~~~~~g~~~~~~l~~~l~~~  129 (239)
                      +|++| +....+.|..+.+.+.+|+++.
T Consensus       112 i~~~G-~~v~~~~G~~~~e~l~~~l~~~  138 (139)
T PRK10996        112 IFKNG-QVVDMLNGAVPKAPFDSWLNEA  138 (139)
T ss_pred             EEECC-EEEEEEcCCCCHHHHHHHHHHh
Confidence            99876 6677889999999999999875

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.85  E-value=1.8e-20  Score=140.75  Aligned_cols=92  Identities=25%  Similarity=0.554  Sum_probs=80.6

Q ss_pred             CCCcEEcChhhHHHHh--cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCC---
Q 026412           22 ADDVVVLTEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG---   96 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~--~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~---   96 (239)
                      ...+.++++++|++.+  ..+++++|.||+|||++|+.+.|.++++++.+.. .++.++.||++++++++++|+|.+   
T Consensus        27 ~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~-~~v~f~~VDvd~~~~la~~~~V~~~~~  105 (152)
T cd02962          27 PEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN-NNLKFGKIDIGRFPNVAEKFRVSTSPL  105 (152)
T ss_pred             CCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc-CCeEEEEEECCCCHHHHHHcCceecCC
Confidence            4578899999999988  3457899999999999999999999999999853 359999999999999999999988   


Q ss_pred             ---CCeEEEEeCCCcCccccCC
Q 026412           97 ---FPTLKFFPKGNKDGEEYGG  115 (239)
Q Consensus        97 ---~Pt~~~~~~g~~~~~~~~g  115 (239)
                         +||+++|++| +...++.|
T Consensus       106 v~~~PT~ilf~~G-k~v~r~~G  126 (152)
T cd02962         106 SKQLPTIILFQGG-KEVARRPY  126 (152)
T ss_pred             cCCCCEEEEEECC-EEEEEEec
Confidence               9999999987 55566665

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.85  E-value=5.1e-21  Score=136.01  Aligned_cols=84  Identities=19%  Similarity=0.307  Sum_probs=73.9

Q ss_pred             hhhHHHHhc--CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCC
Q 026412           30 EDNFEKEVG--QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN  107 (239)
Q Consensus        30 ~~~f~~~~~--~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~  107 (239)
                      .++|++.+.  ++++++|.|||+||++|+.|.|.++++++.++  +.+.|++||++++++++++|+|.++||+++|++| 
T Consensus         2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~--~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G-   78 (114)
T cd02954           2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVS--NFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRN-   78 (114)
T ss_pred             HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHcc--CceEEEEEECCCCHHHHHHcCCCCCCEEEEEECC-
Confidence            567888883  68899999999999999999999999999986  3478999999999999999999999999999988 


Q ss_pred             cCccccCCC
Q 026412          108 KDGEEYGGG  116 (239)
Q Consensus       108 ~~~~~~~g~  116 (239)
                      +......|.
T Consensus        79 ~~v~~~~G~   87 (114)
T cd02954          79 KHMKIDLGT   87 (114)
T ss_pred             EEEEEEcCC
Confidence            555566554

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.85  E-value=4.3e-21  Score=169.92  Aligned_cols=151  Identities=39%  Similarity=0.708  Sum_probs=116.0

Q ss_pred             CcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCC-CCeEEEEEeCccchhHHHHcCCCCCCeEEE
Q 026412           24 DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFPTLKF  102 (239)
Q Consensus        24 ~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~-~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~  102 (239)
                      .+..++.++|+..+.++++++|.||||||++|+++.|.|.++++.+... +++.++.|||+.++++|++|+|.++||+++
T Consensus         2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~   81 (462)
T TIGR01130         2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKI   81 (462)
T ss_pred             CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEE
Confidence            4678999999999988999999999999999999999999999887643 469999999999999999999999999999


Q ss_pred             EeCCCcCccccCCCCCHHHHHHHHHHhhCCCCCCCCCcccccchhhhhhHHHHHHHhccchhHHHHHHHHHh
Q 026412          103 FPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIER  174 (239)
Q Consensus       103 ~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  174 (239)
                      |++|......|.|.++.+.+.+|+.+.+++..............+..-+..++.|+.+.++.....+.+++.
T Consensus        82 ~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~a~  153 (462)
T TIGR01130        82 FRNGEDSVSDYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADDDVVVIGFFKDLDSELNDTFLSVAE  153 (462)
T ss_pred             EeCCccceeEecCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCcEEEEEECCCCcHHHHHHHHHHH
Confidence            998843268899999999999999999886655443333323333332223334444434344444444443

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.85  E-value=1.4e-20  Score=131.92  Aligned_cols=100  Identities=52%  Similarity=0.991  Sum_probs=91.7

Q ss_pred             EcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCC
Q 026412           27 VLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG  106 (239)
Q Consensus        27 ~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g  106 (239)
                      +++.++|.+.+.++++++|.||++||++|+.+.|.|.++++.++..+.+.++.+|++.+..++++|+|+++|++++|+++
T Consensus         2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~   81 (101)
T cd02961           2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNG   81 (101)
T ss_pred             cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCC
Confidence            57889999999877899999999999999999999999999985446799999999999999999999999999999888


Q ss_pred             CcCccccCCCCCHHHHHHHH
Q 026412          107 NKDGEEYGGGRDLEDFVSFI  126 (239)
Q Consensus       107 ~~~~~~~~g~~~~~~l~~~l  126 (239)
                      +....+|.|..+.+++.+|+
T Consensus        82 ~~~~~~~~g~~~~~~i~~~~  101 (101)
T cd02961          82 SKEPVKYEGPRTLESLVEFI  101 (101)
T ss_pred             CcccccCCCCcCHHHHHhhC
Confidence            67788999999999998875

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.84  E-value=2.6e-20  Score=131.65  Aligned_cols=98  Identities=22%  Similarity=0.413  Sum_probs=85.2

Q ss_pred             EcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCC
Q 026412           27 VLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG  106 (239)
Q Consensus        27 ~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g  106 (239)
                      ..+.++|+..+.++++++|.|||+||++|+.+.|.++++++.++. ..+.++.+|+| +.+++++|+|+++||+++|++|
T Consensus         4 i~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~-~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g   81 (102)
T cd02948           4 INNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD-DLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNG   81 (102)
T ss_pred             ccCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC-CcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECC
Confidence            357889999998899999999999999999999999999999863 35789999999 7789999999999999999877


Q ss_pred             CcCccccCCCCCHHHHHHHHHH
Q 026412          107 NKDGEEYGGGRDLEDFVSFINE  128 (239)
Q Consensus       107 ~~~~~~~~g~~~~~~l~~~l~~  128 (239)
                       +...+..|. +++.+.++|.+
T Consensus        82 -~~~~~~~G~-~~~~~~~~i~~  101 (102)
T cd02948          82 -ELVAVIRGA-NAPLLNKTITE  101 (102)
T ss_pred             -EEEEEEecC-ChHHHHHHHhh
Confidence             555666674 88999988864

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.84  E-value=4.6e-20  Score=130.64  Aligned_cols=94  Identities=18%  Similarity=0.347  Sum_probs=80.0

Q ss_pred             ChhhHHHHh--cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch---hHHHHcCCCCCCeEEEE
Q 026412           29 TEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK---DLAEKYGVSGFPTLKFF  103 (239)
Q Consensus        29 ~~~~f~~~~--~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~---~l~~~~~i~~~Pt~~~~  103 (239)
                      +.++|++.+  .++++++|.|||+||++|+.+.|.++++++.+   +++.++.||++++.   +++++|+|.++||+++|
T Consensus         2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~---~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~   78 (103)
T cd02985           2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC---NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFY   78 (103)
T ss_pred             CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC---CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEE
Confidence            467888888  34899999999999999999999999999998   36899999999764   89999999999999999


Q ss_pred             eCCCcCccccCCCCCHHHHHHHHH
Q 026412          104 PKGNKDGEEYGGGRDLEDFVSFIN  127 (239)
Q Consensus       104 ~~g~~~~~~~~g~~~~~~l~~~l~  127 (239)
                      ++| +...++.|. .++++.+-+.
T Consensus        79 ~~G-~~v~~~~G~-~~~~l~~~~~  100 (103)
T cd02985          79 KDG-EKIHEEEGI-GPDELIGDVL  100 (103)
T ss_pred             eCC-eEEEEEeCC-CHHHHHHHHH
Confidence            877 667788884 5667766554

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.84  E-value=3.7e-20  Score=131.39  Aligned_cols=97  Identities=39%  Similarity=0.788  Sum_probs=84.8

Q ss_pred             hhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCC-CCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCc
Q 026412           30 EDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK  108 (239)
Q Consensus        30 ~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~-~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~  108 (239)
                      +++|+++ .++++++|.||++||++|+.+.|.|+++++.++.. .++.++.+|++.++.++++|+|.++||+++|.+|  
T Consensus         6 ~~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~--   82 (104)
T cd03000           6 DDSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD--   82 (104)
T ss_pred             hhhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC--
Confidence            4788875 45779999999999999999999999999988643 3589999999999999999999999999999654  


Q ss_pred             CccccCCCCCHHHHHHHHHHh
Q 026412          109 DGEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus       109 ~~~~~~g~~~~~~l~~~l~~~  129 (239)
                      ....|.|..+.+++.+|+++.
T Consensus        83 ~~~~~~G~~~~~~l~~~~~~~  103 (104)
T cd03000          83 LAYNYRGPRTKDDIVEFANRV  103 (104)
T ss_pred             CceeecCCCCHHHHHHHHHhh
Confidence            456789999999999999863

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=99.83  E-value=3.5e-21  Score=154.45  Aligned_cols=148  Identities=28%  Similarity=0.493  Sum_probs=115.1

Q ss_pred             cChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccC---CCCeEEEEEeCccchhHHHHcCCCCCCeEEEEe
Q 026412           28 LTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTL---EDDVVVANLDADKYKDLAEKYGVSGFPTLKFFP  104 (239)
Q Consensus        28 l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~---~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~  104 (239)
                      ++..|++.+++.+..++|.|||+||++++.++|.|++.|..++.   ++.++++.|||+.+..++++|.|..|||+.+|+
T Consensus         1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr   80 (375)
T KOG0912|consen    1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR   80 (375)
T ss_pred             CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence            35678999999999999999999999999999999998876532   368999999999999999999999999999999


Q ss_pred             CCCcCccccCCCCCHHHHHHHHHHhhCCCCCCCCCcccccchhhhhhHHHHHHHhccchhHHHHHHHHHhh
Q 026412          105 KGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERG  175 (239)
Q Consensus       105 ~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  175 (239)
                      +|......|.|.|+.+.+.+||+++...+......+.+.......-...+++|+.+.+......+.+++..
T Consensus        81 nG~~~~rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspey~~~~kva~~  151 (375)
T KOG0912|consen   81 NGEMMKREYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFPSKDSPEYDNLRKVASL  151 (375)
T ss_pred             ccchhhhhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEeccCCCchHHHHHHHHHH
Confidence            99555569999999999999999998765444333333222222222344567765555555666666553

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.82  E-value=2.4e-19  Score=129.14  Aligned_cols=101  Identities=39%  Similarity=0.760  Sum_probs=83.6

Q ss_pred             CcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCC-CCeEEEEEeCc--cchhHHHHcCCCCCCe
Q 026412           24 DVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDAD--KYKDLAEKYGVSGFPT   99 (239)
Q Consensus        24 ~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~-~~v~~~~vd~~--~~~~l~~~~~i~~~Pt   99 (239)
                      .+.+++.++|++.+ .++++++|.||++||++|+.+.|.|+++++.++.. +.+.++.+||+  .+++++++|+|+++||
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt   81 (114)
T cd02992           2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT   81 (114)
T ss_pred             CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence            57889999999998 55579999999999999999999999999988643 35899999986  4678999999999999


Q ss_pred             EEEEeCCCcC---ccccCCC-CCHHHHHH
Q 026412          100 LKFFPKGNKD---GEEYGGG-RDLEDFVS  124 (239)
Q Consensus       100 ~~~~~~g~~~---~~~~~g~-~~~~~l~~  124 (239)
                      +++|++|.+.   ...|.|+ +..+.+.+
T Consensus        82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~~  110 (114)
T cd02992          82 LRYFPPFSKEATDGLKQEGPERDVNELRE  110 (114)
T ss_pred             EEEECCCCccCCCCCcccCCccCHHHHHH
Confidence            9999888532   3566666 66665543

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.82  E-value=1.1e-19  Score=128.93  Aligned_cols=94  Identities=28%  Similarity=0.476  Sum_probs=83.1

Q ss_pred             hhHHHHhcCCCcEEEEEECCCChHHhhHhHHH---HHHHHHccCCCCeEEEEEeCcc----chhHHHHcCCCCCCeEEEE
Q 026412           31 DNFEKEVGQDRGALVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDADK----YKDLAEKYGVSGFPTLKFF  103 (239)
Q Consensus        31 ~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~---~~~a~~~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~Pt~~~~  103 (239)
                      +.|.+.+.++++++|.||++||++|+.+.|.+   .++++.+..  ++.++.||+++    ...++++|+|.++||+++|
T Consensus         2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~   79 (104)
T cd02953           2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK--DVVLLRADWTKNDPEITALLKRFGVFGPPTYLFY   79 (104)
T ss_pred             HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC--CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEE
Confidence            56888888899999999999999999999988   678887753  79999999986    5789999999999999999


Q ss_pred             eC-CCcCccccCCCCCHHHHHHHH
Q 026412          104 PK-GNKDGEEYGGGRDLEDFVSFI  126 (239)
Q Consensus       104 ~~-g~~~~~~~~g~~~~~~l~~~l  126 (239)
                      ++ +++.+.++.|..+.++|.++|
T Consensus        80 ~~~~g~~~~~~~G~~~~~~l~~~l  103 (104)
T cd02953          80 GPGGEPEPLRLPGFLTADEFLEAL  103 (104)
T ss_pred             CCCCCCCCcccccccCHHHHHHHh
Confidence            86 457788999999999999887

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.82  E-value=1.5e-19  Score=127.69  Aligned_cols=99  Identities=17%  Similarity=0.235  Sum_probs=89.8

Q ss_pred             CCCcEEcChhhHHHHhcCCCcEEEEEECCC--ChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCe
Q 026412           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPW--CGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT   99 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~w--C~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt   99 (239)
                      ..++..++..||++.+..+.+++|.||++|  ||+|+.+.|.+++++++++  +.+.++.||+++++.++.+|+|+++||
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~--~~v~f~kVdid~~~~la~~f~V~sIPT   86 (111)
T cd02965           9 RHGWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFP--GRFRAAVVGRADEQALAARFGVLRTPA   86 (111)
T ss_pred             hcCCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCC--CcEEEEEEECCCCHHHHHHcCCCcCCE
Confidence            356788999999999988899999999997  9999999999999999986  458899999999999999999999999


Q ss_pred             EEEEeCCCcCccccCCCCCHHHHH
Q 026412          100 LKFFPKGNKDGEEYGGGRDLEDFV  123 (239)
Q Consensus       100 ~~~~~~g~~~~~~~~g~~~~~~l~  123 (239)
                      +++|++| +....+.|..+.+++.
T Consensus        87 li~fkdG-k~v~~~~G~~~~~e~~  109 (111)
T cd02965          87 LLFFRDG-RYVGVLAGIRDWDEYV  109 (111)
T ss_pred             EEEEECC-EEEEEEeCccCHHHHh
Confidence            9999988 6677888988888775

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.81  E-value=2.3e-19  Score=156.19  Aligned_cols=106  Identities=31%  Similarity=0.615  Sum_probs=93.1

Q ss_pred             CCCcEEcChhhHHHHhc---CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch-hHH-HHcCCCC
Q 026412           22 ADDVVVLTEDNFEKEVG---QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-DLA-EKYGVSG   96 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~---~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~-~l~-~~~~i~~   96 (239)
                      +..|..++.+||++.+.   .++++||.||||||++|+.+.|.|+++++.++.. ++.++.||+|.+. .++ ++|+|.+
T Consensus       350 ~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~-~v~~~kVdvD~~~~~~~~~~~~I~~  428 (463)
T TIGR00424       350 SNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS-GVKVAKFRADGDQKEFAKQELQLGS  428 (463)
T ss_pred             CCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CcEEEEEECCCCccHHHHHHcCCCc
Confidence            56889999999999984   7889999999999999999999999999998643 4889999998653 454 7899999


Q ss_pred             CCeEEEEeCCCcCccccC-CCCCHHHHHHHHHH
Q 026412           97 FPTLKFFPKGNKDGEEYG-GGRDLEDFVSFINE  128 (239)
Q Consensus        97 ~Pt~~~~~~g~~~~~~~~-g~~~~~~l~~~l~~  128 (239)
                      +||+++|++|...+..|. |.++.+.|..||+.
T Consensus       429 ~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~  461 (463)
T TIGR00424       429 FPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL  461 (463)
T ss_pred             cceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence            999999999876778897 58999999999985

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>TIGR01068 thioredoxin thioredoxin

Probab=99.81  E-value=4.9e-19  Score=124.41  Aligned_cols=99  Identities=36%  Similarity=0.746  Sum_probs=87.5

Q ss_pred             cChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCC
Q 026412           28 LTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG  106 (239)
Q Consensus        28 l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g  106 (239)
                      ++.++|.+.+ ..+++++|.||++||++|+.+.|.+.++++.+.  +++.++.+|++.++.++++|+|.++|++++|++|
T Consensus         1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g   78 (101)
T TIGR01068         1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYE--GKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNG   78 (101)
T ss_pred             CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhc--CCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCC
Confidence            3577898888 446699999999999999999999999998875  4699999999999999999999999999999876


Q ss_pred             CcCccccCCCCCHHHHHHHHHHh
Q 026412          107 NKDGEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus       107 ~~~~~~~~g~~~~~~l~~~l~~~  129 (239)
                       +....+.|..+.+.+.+|+++.
T Consensus        79 -~~~~~~~g~~~~~~l~~~l~~~  100 (101)
T TIGR01068        79 -KEVDRSVGALPKAALKQLINKN  100 (101)
T ss_pred             -cEeeeecCCCCHHHHHHHHHhh
Confidence             4557778999999999999864

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>PLN02309 5'-adenylylsulfate reductase

Probab=99.81  E-value=3.2e-19  Score=155.24  Aligned_cols=107  Identities=32%  Similarity=0.637  Sum_probs=95.7

Q ss_pred             CCCcEEcChhhHHHHh---cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc-cchhHHH-HcCCCC
Q 026412           22 ADDVVVLTEDNFEKEV---GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-KYKDLAE-KYGVSG   96 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~---~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~-~~~~l~~-~~~i~~   96 (239)
                      ...+..++.++|++++   +.+++++|.||||||++|+.+.|.|+++++.+... ++.|+.||++ .+.+++. +|+|.+
T Consensus       344 ~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~-~V~f~kVD~d~~~~~la~~~~~I~~  422 (457)
T PLN02309        344 SQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS-GVKVAKFRADGDQKEFAKQELQLGS  422 (457)
T ss_pred             CCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CeEEEEEECCCcchHHHHhhCCCce
Confidence            4578999999999987   57899999999999999999999999999998643 6999999999 7788886 699999


Q ss_pred             CCeEEEEeCCCcCccccCC-CCCHHHHHHHHHHh
Q 026412           97 FPTLKFFPKGNKDGEEYGG-GRDLEDFVSFINEK  129 (239)
Q Consensus        97 ~Pt~~~~~~g~~~~~~~~g-~~~~~~l~~~l~~~  129 (239)
                      +||+++|++|...+..|.| .++.+.|+.||+..
T Consensus       423 ~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~  456 (457)
T PLN02309        423 FPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL  456 (457)
T ss_pred             eeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence            9999999998777888975 79999999999864

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.81  E-value=5e-19  Score=132.33  Aligned_cols=100  Identities=22%  Similarity=0.444  Sum_probs=85.9

Q ss_pred             hhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc--chhHHHHcCCCCCCeEEEEeCCC
Q 026412           30 EDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--YKDLAEKYGVSGFPTLKFFPKGN  107 (239)
Q Consensus        30 ~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~~~~~~g~  107 (239)
                      ..+|++.+.++++++|.||++||++|+.+.|.+.++++.+..  .+.|+.||++.  +..++++|+|.++|++++|+++|
T Consensus        10 ~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~--~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G   87 (142)
T cd02950          10 STPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD--QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREG   87 (142)
T ss_pred             cCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc--CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCC
Confidence            467888888899999999999999999999999999999863  46666666664  46889999999999999997555


Q ss_pred             cCccccCCCCCHHHHHHHHHHhhC
Q 026412          108 KDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus       108 ~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      +...++.|..+.+++.++|.+.+.
T Consensus        88 ~~v~~~~G~~~~~~l~~~l~~l~~  111 (142)
T cd02950          88 NEEGQSIGLQPKQVLAQNLDALVA  111 (142)
T ss_pred             CEEEEEeCCCCHHHHHHHHHHHHc
Confidence            777888999999999999998875

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=99.81  E-value=6.7e-20  Score=147.13  Aligned_cols=110  Identities=31%  Similarity=0.697  Sum_probs=91.1

Q ss_pred             CCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCC-CCeEEEEEeCccchhHHHHcCCCCCCeE
Q 026412           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFPTL  100 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~-~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  100 (239)
                      +..|.+|++ .|... .....++|.||||||+||++++|.|.++.-.++.- ..+.++++||+..+.++.+|+|+||||+
T Consensus        27 pt~VeDLdd-kFkdn-kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTI  104 (468)
T KOG4277|consen   27 PTAVEDLDD-KFKDN-KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTI  104 (468)
T ss_pred             chhhhhhhH-Hhhhc-ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceE
Confidence            345555643 34332 34568999999999999999999999998777643 3589999999999999999999999999


Q ss_pred             EEEeCCCcCccccCCCCCHHHHHHHHHHhhCCCCC
Q 026412          101 KFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRD  135 (239)
Q Consensus       101 ~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~  135 (239)
                      .+|++|  ....|.|+|+.+++++|..+..++-..
T Consensus       105 k~~kgd--~a~dYRG~R~Kd~iieFAhR~a~aiI~  137 (468)
T KOG4277|consen  105 KFFKGD--HAIDYRGGREKDAIIEFAHRCAAAIIE  137 (468)
T ss_pred             EEecCC--eeeecCCCccHHHHHHHHHhcccceee
Confidence            999876  678999999999999999887765443

>PTZ00102 disulphide isomerase; Provisional

Probab=99.81  E-value=3.2e-19  Score=158.81  Aligned_cols=110  Identities=35%  Similarity=0.731  Sum_probs=100.7

Q ss_pred             CCcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE
Q 026412           23 DDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  101 (239)
Q Consensus        23 ~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  101 (239)
                      ..+..++.++|++.+ +++++++|.||||||++|+.+.|.|+++++.++..+.+.++.+|++.+...+++|+++++||++
T Consensus       357 ~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~  436 (477)
T PTZ00102        357 GPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTIL  436 (477)
T ss_pred             CCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEE
Confidence            457889999999986 8889999999999999999999999999999876667999999999999999999999999999


Q ss_pred             EEeCCCcCccccCCCCCHHHHHHHHHHhhCC
Q 026412          102 FFPKGNKDGEEYGGGRDLEDFVSFINEKCGT  132 (239)
Q Consensus       102 ~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~  132 (239)
                      +|++|++.+..|.|.++.+.+.+||++++..
T Consensus       437 ~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~  467 (477)
T PTZ00102        437 FVKAGERTPIPYEGERTVEGFKEFVNKHATN  467 (477)
T ss_pred             EEECCCcceeEecCcCCHHHHHHHHHHcCCC
Confidence            9999877777899999999999999998753

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.80  E-value=5.1e-19  Score=130.48  Aligned_cols=105  Identities=16%  Similarity=0.262  Sum_probs=87.3

Q ss_pred             cChhhHHHHh--cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE-EEe
Q 026412           28 LTEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK-FFP  104 (239)
Q Consensus        28 l~~~~f~~~~--~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~-~~~  104 (239)
                      -+..+|++.+  ..+++++|.|||+||+||+.+.|.++++++.+.  +.+.|+.||+|+++++++.|+|++.|+++ +|+
T Consensus         9 ~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~--~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk   86 (142)
T PLN00410          9 HSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIK--NFAVIYLVDITEVPDFNTMYELYDPCTVMFFFR   86 (142)
T ss_pred             CCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcC--CceEEEEEECCCCHHHHHHcCccCCCcEEEEEE
Confidence            3477899988  568899999999999999999999999999985  34788999999999999999999776666 888


Q ss_pred             CCCcCccccCC--------CCCHHHHHHHHHHhhCCCC
Q 026412          105 KGNKDGEEYGG--------GRDLEDFVSFINEKCGTSR  134 (239)
Q Consensus       105 ~g~~~~~~~~g--------~~~~~~l~~~l~~~~~~~~  134 (239)
                      +|.....+..|        ..+.++|.+-++....-++
T Consensus        87 ~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~  124 (142)
T PLN00410         87 NKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGAR  124 (142)
T ss_pred             CCeEEEEEecccccccccccCCHHHHHHHHHHHHHHHh
Confidence            87546777778        5678888888877654433

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=4.4e-19  Score=125.12  Aligned_cols=86  Identities=34%  Similarity=0.752  Sum_probs=74.8

Q ss_pred             cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCC
Q 026412           38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGR  117 (239)
Q Consensus        38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~  117 (239)
                      .++++++|.|||+|||||+.+.|.+.+++.+|+   ++.|++||+|+++++++.++|...||+.+|++| .....+.|. 
T Consensus        19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~---~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g-~~~~~~vGa-   93 (106)
T KOG0907|consen   19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYP---DVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGG-EEVDEVVGA-   93 (106)
T ss_pred             CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCC---CCEEEEEecccCHhHHHhcCceEeeEEEEEECC-EEEEEEecC-
Confidence            456999999999999999999999999999996   599999999999999999999999999999887 566677776 


Q ss_pred             CHHHHHHHHHH
Q 026412          118 DLEDFVSFINE  128 (239)
Q Consensus       118 ~~~~l~~~l~~  128 (239)
                      +.+++.+.+..
T Consensus        94 ~~~~l~~~i~~  104 (106)
T KOG0907|consen   94 NKAELEKKIAK  104 (106)
T ss_pred             CHHHHHHHHHh
Confidence            44466666653

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.80  E-value=7.2e-19  Score=126.40  Aligned_cols=88  Identities=23%  Similarity=0.337  Sum_probs=77.1

Q ss_pred             CcEEcCh-hhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEE
Q 026412           24 DVVVLTE-DNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF  102 (239)
Q Consensus        24 ~v~~l~~-~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~  102 (239)
                      .+..+++ ++|.+.+.++++++|.||+|||++|+.+.|.++++++.++   ++.+++||++++++++++|+|.++||+++
T Consensus         5 ~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~---~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~   81 (113)
T cd02989           5 KYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL---ETKFIKVNAEKAPFLVEKLNIKVLPTVIL   81 (113)
T ss_pred             CeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC---CCEEEEEEcccCHHHHHHCCCccCCEEEE
Confidence            4555665 8999999888999999999999999999999999999875   58999999999999999999999999999


Q ss_pred             EeCCCcCccccCC
Q 026412          103 FPKGNKDGEEYGG  115 (239)
Q Consensus       103 ~~~g~~~~~~~~g  115 (239)
                      |++| +...++.|
T Consensus        82 fk~G-~~v~~~~g   93 (113)
T cd02989          82 FKNG-KTVDRIVG   93 (113)
T ss_pred             EECC-EEEEEEEC
Confidence            9988 44444433

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.80  E-value=5.2e-19  Score=127.35  Aligned_cols=88  Identities=25%  Similarity=0.418  Sum_probs=77.4

Q ss_pred             CCcEEcChhhHHHHhcCC---CcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCe
Q 026412           23 DDVVVLTEDNFEKEVGQD---RGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT   99 (239)
Q Consensus        23 ~~v~~l~~~~f~~~~~~~---k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt   99 (239)
                      ..+..+++++|.+.+.+.   ++++|.||+|||++|+.+.|.++++++.++   ++.|++||++++ .++++|+|.++||
T Consensus         4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~---~v~f~~vd~~~~-~l~~~~~i~~~Pt   79 (113)
T cd02957           4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP---ETKFVKINAEKA-FLVNYLDIKVLPT   79 (113)
T ss_pred             ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC---CcEEEEEEchhh-HHHHhcCCCcCCE
Confidence            356788899999998433   899999999999999999999999999985   588999999988 9999999999999


Q ss_pred             EEEEeCCCcCccccCC
Q 026412          100 LKFFPKGNKDGEEYGG  115 (239)
Q Consensus       100 ~~~~~~g~~~~~~~~g  115 (239)
                      +++|++| +...++.|
T Consensus        80 ~~~f~~G-~~v~~~~G   94 (113)
T cd02957          80 LLVYKNG-ELIDNIVG   94 (113)
T ss_pred             EEEEECC-EEEEEEec
Confidence            9999988 55556655

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.78  E-value=2.4e-18  Score=120.31  Aligned_cols=94  Identities=24%  Similarity=0.582  Sum_probs=80.2

Q ss_pred             ChhhHHHHhcCC--CcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCC
Q 026412           29 TEDNFEKEVGQD--RGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG  106 (239)
Q Consensus        29 ~~~~f~~~~~~~--k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g  106 (239)
                      +.++|++.+...  ++++|.||++||++|+.+.|.++++++.+  .+++.++.+|++++++++++|++.++||+++|++|
T Consensus         1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~--~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g   78 (97)
T cd02984           1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEA--FPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNG   78 (97)
T ss_pred             CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHh--CCceEEEEEccccCHHHHHhcCCccccEEEEEECC
Confidence            357888888544  99999999999999999999999999986  35799999999999999999999999999999876


Q ss_pred             CcCccccCCCCCHHHHHHHH
Q 026412          107 NKDGEEYGGGRDLEDFVSFI  126 (239)
Q Consensus       107 ~~~~~~~~g~~~~~~l~~~l  126 (239)
                       +...++.|. +.+++.+.|
T Consensus        79 -~~~~~~~g~-~~~~l~~~~   96 (97)
T cd02984          79 -TIVDRVSGA-DPKELAKKV   96 (97)
T ss_pred             -EEEEEEeCC-CHHHHHHhh
Confidence             555666664 677776655

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.76  E-value=6.3e-18  Score=118.36  Aligned_cols=91  Identities=32%  Similarity=0.553  Sum_probs=81.7

Q ss_pred             HHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccc
Q 026412           34 EKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEE  112 (239)
Q Consensus        34 ~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~  112 (239)
                      +..+ +.+++++|.||++||++|+.+.|.++++++.+.  +++.++.+|++++++++.+++|.++|++++|++| +...+
T Consensus         6 ~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~--~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g-~~v~~   82 (97)
T cd02949           6 RKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFD--GAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDK-ELVKE   82 (97)
T ss_pred             HHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhC--CceEEEEEECCCCHHHHHHCCCeeccEEEEEECC-eEEEE
Confidence            4444 788999999999999999999999999999885  3699999999999999999999999999999876 67788


Q ss_pred             cCCCCCHHHHHHHHH
Q 026412          113 YGGGRDLEDFVSFIN  127 (239)
Q Consensus       113 ~~g~~~~~~l~~~l~  127 (239)
                      +.|..+.+++.+|++
T Consensus        83 ~~g~~~~~~~~~~l~   97 (97)
T cd02949          83 ISGVKMKSEYREFIE   97 (97)
T ss_pred             EeCCccHHHHHHhhC
Confidence            999999999998873

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.76  E-value=6.9e-18  Score=121.33  Aligned_cols=97  Identities=30%  Similarity=0.381  Sum_probs=83.9

Q ss_pred             hHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcC-c
Q 026412           32 NFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKD-G  110 (239)
Q Consensus        32 ~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~-~  110 (239)
                      +|.+.+.+...++|.||++||++|+.+.|.++++++.+   +.+.+..+|++++++++++|+|.++||+++|++|+.. .
T Consensus        14 ~~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~---~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~   90 (113)
T cd02975          14 EFFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS---DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGG   90 (113)
T ss_pred             HHHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc---CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecce
Confidence            36666667778999999999999999999999999875   3688999999999999999999999999999887532 3


Q ss_pred             cccCCCCCHHHHHHHHHHhhC
Q 026412          111 EEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus       111 ~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      .++.|..+.+++.+||...+.
T Consensus        91 ~~~~G~~~~~el~~~i~~i~~  111 (113)
T cd02975          91 IRYYGLPAGYEFASLIEDIVR  111 (113)
T ss_pred             EEEEecCchHHHHHHHHHHHh
Confidence            478899999999999987654

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.76  E-value=5.9e-18  Score=119.43  Aligned_cols=82  Identities=16%  Similarity=0.274  Sum_probs=71.6

Q ss_pred             hhhHHHHh--cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCC
Q 026412           30 EDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN  107 (239)
Q Consensus        30 ~~~f~~~~--~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~  107 (239)
                      .+.|++.+  .++++++|.|+|+||++|+.+.|.+++++++++  +.+.|+.||+|+.+++++.|+|...||+++|.+|.
T Consensus         2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~--~~~~f~kVDVDev~dva~~y~I~amPtfvffkngk   79 (114)
T cd02986           2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLS--KMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQ   79 (114)
T ss_pred             HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHcc--CceEEEEEeccccHHHHHhcCceeCcEEEEEECCc
Confidence            35677777  368999999999999999999999999999985  12999999999999999999999999999999885


Q ss_pred             cCcccc
Q 026412          108 KDGEEY  113 (239)
Q Consensus       108 ~~~~~~  113 (239)
                      -....+
T Consensus        80 h~~~d~   85 (114)
T cd02986          80 HMKVDY   85 (114)
T ss_pred             EEEEec
Confidence            444454

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>PTZ00051 thioredoxin; Provisional

Probab=99.75  E-value=8.3e-18  Score=117.86  Aligned_cols=91  Identities=33%  Similarity=0.685  Sum_probs=78.8

Q ss_pred             cChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCC
Q 026412           28 LTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN  107 (239)
Q Consensus        28 l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~  107 (239)
                      .+.++|.+++..+++++|.||++||++|+.+.|.++++++.+.   ++.++.+|++++..++++|++.++||+++|++| 
T Consensus         6 ~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g-   81 (98)
T PTZ00051          6 TSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT---KMVFVKVDVDELSEVAEKENITSMPTFKVFKNG-   81 (98)
T ss_pred             cCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC---CcEEEEEECcchHHHHHHCCCceeeEEEEEeCC-
Confidence            3467889988889999999999999999999999999999864   689999999999999999999999999999877 


Q ss_pred             cCccccCCCCCHHHHH
Q 026412          108 KDGEEYGGGRDLEDFV  123 (239)
Q Consensus       108 ~~~~~~~g~~~~~~l~  123 (239)
                      +....+.|. ..+++.
T Consensus        82 ~~~~~~~G~-~~~~~~   96 (98)
T PTZ00051         82 SVVDTLLGA-NDEALK   96 (98)
T ss_pred             eEEEEEeCC-CHHHhh
Confidence            566677775 555443

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.75  E-value=1.5e-17  Score=121.87  Aligned_cols=99  Identities=24%  Similarity=0.383  Sum_probs=83.5

Q ss_pred             hhHHHHhcCC-CcEEEEEECCCChHHhhHhHHHH---HHHHHccCCCCeEEEEEeCccc-------------hhHHHHcC
Q 026412           31 DNFEKEVGQD-RGALVEFYAPWCGHCKNLAPTYE---KVAAAFTLEDDVVVANLDADKY-------------KDLAEKYG   93 (239)
Q Consensus        31 ~~f~~~~~~~-k~vlV~F~a~wC~~C~~~~~~~~---~~a~~~~~~~~v~~~~vd~~~~-------------~~l~~~~~   93 (239)
                      +.+.+...++ ++++|.||++||++|+.+.|.+.   .+.+.+.  +++.++.+|++..             .+++.+|+
T Consensus         4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~--~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~   81 (125)
T cd02951           4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR--AHFVVVYINIDGDKEVTDFDGEALSEKELARKYR   81 (125)
T ss_pred             HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH--hheEEEEEEccCCceeeccCCCCccHHHHHHHcC
Confidence            4566677777 99999999999999999999885   5555554  3688899998753             68999999


Q ss_pred             CCCCCeEEEEeCC-CcCccccCCCCCHHHHHHHHHHhhC
Q 026412           94 VSGFPTLKFFPKG-NKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus        94 i~~~Pt~~~~~~g-~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      |.++||+++|.++ |+...++.|..+.+.+.++|+...+
T Consensus        82 v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~  120 (125)
T cd02951          82 VRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE  120 (125)
T ss_pred             CccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence            9999999999987 6788899999999999999988654

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=1.2e-17  Score=130.90  Aligned_cols=106  Identities=27%  Similarity=0.580  Sum_probs=92.8

Q ss_pred             EcChhhHHHHh--cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEe
Q 026412           27 VLTEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFP  104 (239)
Q Consensus        27 ~l~~~~f~~~~--~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~  104 (239)
                      .-++.+|+..+  ...+.++|.|||.||+||+++.|.|+.++.+|+   ..+|.+||+|+.+.++..+||...||+++|+
T Consensus         6 v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp---~aVFlkVdVd~c~~taa~~gV~amPTFiff~   82 (288)
T KOG0908|consen    6 VNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP---GAVFLKVDVDECRGTAATNGVNAMPTFIFFR   82 (288)
T ss_pred             ecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc---ccEEEEEeHHHhhchhhhcCcccCceEEEEe
Confidence            34567899888  567899999999999999999999999999996   7899999999999999999999999999999


Q ss_pred             CCCcCccccCCCCCHHHHHHHHHHhhCCCCCCC
Q 026412          105 KGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGK  137 (239)
Q Consensus       105 ~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~  137 (239)
                      +| .....+.|. ++..+.+-+.+++.++....
T Consensus        83 ng-~kid~~qGA-d~~gLe~kv~~~~stsaa~~  113 (288)
T KOG0908|consen   83 NG-VKIDQIQGA-DASGLEEKVAKYASTSAASS  113 (288)
T ss_pred             cC-eEeeeecCC-CHHHHHHHHHHHhccCcccc
Confidence            98 556777775 88889999988887665444

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=99.73  E-value=3.9e-17  Score=126.07  Aligned_cols=102  Identities=21%  Similarity=0.345  Sum_probs=83.5

Q ss_pred             CCCcEEcCh-hhHHHHhcC-C--CcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCC
Q 026412           22 ADDVVVLTE-DNFEKEVGQ-D--RGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGF   97 (239)
Q Consensus        22 ~~~v~~l~~-~~f~~~~~~-~--k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~   97 (239)
                      -..+.+++. ++|.+.+.. +  .+++|+||++||++|+.+.|.+.+++..++   .+.|++||++.+ .++.+|+|.++
T Consensus        61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~---~vkF~kVd~d~~-~l~~~f~v~~v  136 (175)
T cd02987          61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP---AVKFCKIRASAT-GASDEFDTDAL  136 (175)
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC---CeEEEEEeccch-hhHHhCCCCCC
Confidence            356788888 999999843 3  499999999999999999999999999985   699999999987 89999999999


Q ss_pred             CeEEEEeCCCcCccccCC-------CCCHHHHHHHHHH
Q 026412           98 PTLKFFPKGNKDGEEYGG-------GRDLEDFVSFINE  128 (239)
Q Consensus        98 Pt~~~~~~g~~~~~~~~g-------~~~~~~l~~~l~~  128 (239)
                      ||+++|++| +....+.|       ..+.+.+..||.+
T Consensus       137 PTlllyk~G-~~v~~~vG~~~~~g~~f~~~~le~~L~~  173 (175)
T cd02987         137 PALLVYKGG-ELIGNFVRVTEDLGEDFDAEDLESFLVE  173 (175)
T ss_pred             CEEEEEECC-EEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence            999999988 44444433       3456666666653

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=99.72  E-value=4.8e-17  Score=111.78  Aligned_cols=92  Identities=36%  Similarity=0.753  Sum_probs=82.4

Q ss_pred             hhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCc
Q 026412           31 DNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDG  110 (239)
Q Consensus        31 ~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~  110 (239)
                      ++|++.+..+++++|.||++||++|+.+.|.+.++++.   .+++.++.+|++.+.+++++|++.++|+++++.+| ...
T Consensus         1 ~~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g-~~~   76 (93)
T cd02947           1 EEFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE---YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNG-KEV   76 (93)
T ss_pred             CchHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH---CCCceEEEEECCCChhHHHhcCcccccEEEEEECC-EEE
Confidence            36788887779999999999999999999999999988   35799999999999999999999999999999887 567


Q ss_pred             cccCCCCCHHHHHHHH
Q 026412          111 EEYGGGRDLEDFVSFI  126 (239)
Q Consensus       111 ~~~~g~~~~~~l~~~l  126 (239)
                      ..+.|..+.+.+.+||
T Consensus        77 ~~~~g~~~~~~l~~~i   92 (93)
T cd02947          77 DRVVGADPKEELEEFL   92 (93)
T ss_pred             EEEecCCCHHHHHHHh
Confidence            7888988889998887

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.71  E-value=1.2e-16  Score=116.29  Aligned_cols=99  Identities=16%  Similarity=0.251  Sum_probs=80.0

Q ss_pred             CcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc-----------hhHHHHc
Q 026412           24 DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-----------KDLAEKY   92 (239)
Q Consensus        24 ~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~-----------~~l~~~~   92 (239)
                      ....++.++|.+.+.+++.++|+||++|||+|+.+.|.+.++++..    ++.+..||++.+           .++.++|
T Consensus         7 ~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~----~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~   82 (122)
T TIGR01295         7 GLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT----KAPIYYIDSENNGSFEMSSLNDLTAFRSRF   82 (122)
T ss_pred             cceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc----CCcEEEEECCCccCcCcccHHHHHHHHHHc
Confidence            4567888999999988999999999999999999999999999883    355777777633           2555676


Q ss_pred             CC----CCCCeEEEEeCCCcCccccCC-CCCHHHHHHHHH
Q 026412           93 GV----SGFPTLKFFPKGNKDGEEYGG-GRDLEDFVSFIN  127 (239)
Q Consensus        93 ~i----~~~Pt~~~~~~g~~~~~~~~g-~~~~~~l~~~l~  127 (239)
                      ++    .++||+++|++| +...+..| ..+.+++.+|+.
T Consensus        83 ~i~~~i~~~PT~v~~k~G-k~v~~~~G~~~~~~~l~~~~~  121 (122)
T TIGR01295        83 GIPTSFMGTPTFVHITDG-KQVSVRCGSSTTAQELQDIAA  121 (122)
T ss_pred             CCcccCCCCCEEEEEeCC-eEEEEEeCCCCCHHHHHHHhh
Confidence            64    459999999998 55666777 567999998863

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.70  E-value=1.1e-16  Score=141.74  Aligned_cols=107  Identities=49%  Similarity=0.918  Sum_probs=94.4

Q ss_pred             CCcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccC-CCCeEEEEEeCccchhHHHHcCCCCCCeE
Q 026412           23 DDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTL-EDDVVVANLDADKYKDLAEKYGVSGFPTL  100 (239)
Q Consensus        23 ~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~-~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  100 (239)
                      ..+..++..+|.+.+ +++++++|.||+|||++|+.+.|.++++++.+.. +..+.++.+|++.+. +.. +++.++||+
T Consensus       346 ~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~Pt~  423 (462)
T TIGR01130       346 GPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFPTI  423 (462)
T ss_pred             CccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccCEE
Confidence            467789999999998 7789999999999999999999999999999985 337999999999764 334 999999999


Q ss_pred             EEEeCCCc-CccccCCCCCHHHHHHHHHHhhC
Q 026412          101 KFFPKGNK-DGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus       101 ~~~~~g~~-~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      ++|++|+. .+..|.|.++.+.+.+||.+...
T Consensus       424 ~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~  455 (462)
T TIGR01130       424 KFVPAGKKSEPVPYDGDRTLEDFSKFIAKHAT  455 (462)
T ss_pred             EEEeCCCCcCceEecCcCCHHHHHHHHHhcCC
Confidence            99998865 46789999999999999998764

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=99.66  E-value=9.9e-16  Score=119.78  Aligned_cols=99  Identities=18%  Similarity=0.336  Sum_probs=80.7

Q ss_pred             CCCcEEcChhhHHHHh-cC--CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCC
Q 026412           22 ADDVVVLTEDNFEKEV-GQ--DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP   98 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~-~~--~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P   98 (239)
                      -..+.+++..+|...+ ..  +.+|||+||++||++|+.+.|.|+++|..++   .+.|++||++..   ..+|++.++|
T Consensus        81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~---~vkFvkI~ad~~---~~~~~i~~lP  154 (192)
T cd02988          81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP---DTKFVKIISTQC---IPNYPDKNLP  154 (192)
T ss_pred             CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC---CCEEEEEEhHHh---HhhCCCCCCC
Confidence            4678889999999876 33  3589999999999999999999999999985   689999999853   5899999999


Q ss_pred             eEEEEeCCCcCccccCC-------CCCHHHHHHHHH
Q 026412           99 TLKFFPKGNKDGEEYGG-------GRDLEDFVSFIN  127 (239)
Q Consensus        99 t~~~~~~g~~~~~~~~g-------~~~~~~l~~~l~  127 (239)
                      |+++|++| +...++.|       ..+.+.+..+|.
T Consensus       155 Tlliyk~G-~~v~~ivG~~~~gg~~~~~~~lE~~L~  189 (192)
T cd02988         155 TILVYRNG-DIVKQFIGLLEFGGMNTTMEDLEWLLV  189 (192)
T ss_pred             EEEEEECC-EEEEEEeCchhhCCCCCCHHHHHHHHH
Confidence            99999988 44445544       345666666654

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=1e-15  Score=132.67  Aligned_cols=107  Identities=49%  Similarity=0.821  Sum_probs=93.3

Q ss_pred             cEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEE
Q 026412           25 VVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF  103 (239)
Q Consensus        25 v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~  103 (239)
                      ...+...+|.... ..+.+++|.||+|||+||+++.|.|.+++..+..  .+.++.|||+.+.++|++|+|+++||+.+|
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~--~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f  108 (383)
T KOG0191|consen   31 VSELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG--KVKIGAVDCDEHKDLCEKYGIQGFPTLKVF  108 (383)
T ss_pred             hhhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcC--ceEEEEeCchhhHHHHHhcCCccCcEEEEE
Confidence            3334445554444 8889999999999999999999999999999863  799999999999999999999999999999


Q ss_pred             eCCCcCccccCCCCCHHHHHHHHHHhhCCCC
Q 026412          104 PKGNKDGEEYGGGRDLEDFVSFINEKCGTSR  134 (239)
Q Consensus       104 ~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~  134 (239)
                      .+| ..+..|.|.++.+.+.+|+...+....
T Consensus       109 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (383)
T KOG0191|consen  109 RPG-KKPIDYSGPRNAESLAEFLIKELEPSV  138 (383)
T ss_pred             cCC-CceeeccCcccHHHHHHHHHHhhcccc
Confidence            998 778999999999999999998876543

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.64  E-value=4.9e-16  Score=134.76  Aligned_cols=108  Identities=34%  Similarity=0.698  Sum_probs=88.6

Q ss_pred             CCCcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccC-CCCeEEEEEeCc--cchhHHHHcCCCCC
Q 026412           22 ADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTL-EDDVVVANLDAD--KYKDLAEKYGVSGF   97 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~-~~~v~~~~vd~~--~~~~l~~~~~i~~~   97 (239)
                      ...+..|+.++|+..+ .+.+..+|.||++|||||+++.|.|+++++.... .+-+.++.|||.  .|..+|++|+|++|
T Consensus        38 ~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~  117 (606)
T KOG1731|consen   38 DDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGY  117 (606)
T ss_pred             CCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCC
Confidence            4679999999999999 5556999999999999999999999999987653 346788999996  68899999999999


Q ss_pred             CeEEEEeCCCc---CccccCCCCCHHHHHHHHHHh
Q 026412           98 PTLKFFPKGNK---DGEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus        98 Pt~~~~~~g~~---~~~~~~g~~~~~~l~~~l~~~  129 (239)
                      |++.+|+.+..   ....+.|+..+.++.+.+.+.
T Consensus       118 Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~  152 (606)
T KOG1731|consen  118 PTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRT  152 (606)
T ss_pred             ceeeecCCccccCcCCCcccCCcchhhHHHHHHHH
Confidence            99999987632   245566766677777666543

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=4.2e-15  Score=128.84  Aligned_cols=110  Identities=46%  Similarity=0.826  Sum_probs=99.9

Q ss_pred             CcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEE
Q 026412           24 DVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF  102 (239)
Q Consensus        24 ~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~  102 (239)
                      .+..++..+|...+ +.+..++|.||+|||+||+.+.|.|++++..+.....+.++.+||+.+..++.+++|+++||+.+
T Consensus       145 ~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~  224 (383)
T KOG0191|consen  145 EVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKL  224 (383)
T ss_pred             ceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEE
Confidence            38899999999988 77889999999999999999999999999988765789999999999999999999999999999


Q ss_pred             EeCCCcCccccCCCCCHHHHHHHHHHhhCCC
Q 026412          103 FPKGNKDGEEYGGGRDLEDFVSFINEKCGTS  133 (239)
Q Consensus       103 ~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~  133 (239)
                      |++|......|.|.|+.+.+..|+.+..+..
T Consensus       225 f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~  255 (383)
T KOG0191|consen  225 FPPGEEDIYYYSGLRDSDSIVSFVEKKERRN  255 (383)
T ss_pred             ecCCCcccccccccccHHHHHHHHHhhcCCC
Confidence            9988553677789999999999999988764

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.63  E-value=5.8e-15  Score=104.25  Aligned_cols=95  Identities=19%  Similarity=0.284  Sum_probs=78.4

Q ss_pred             HHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCC--CCCeEEEEeCCC-cC
Q 026412           33 FEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS--GFPTLKFFPKGN-KD  109 (239)
Q Consensus        33 f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~--~~Pt~~~~~~g~-~~  109 (239)
                      |..-...++++++.|+++||++|+.+.|.++++|+++.  +.+.|+.||+++++.+++.|++.  ++|++++++.++ ..
T Consensus         5 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~--~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k   82 (103)
T cd02982           5 FFNYEESGKPLLVLFYNKDDSESEELRERFKEVAKKFK--GKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKK   82 (103)
T ss_pred             HhhhhhcCCCEEEEEEcCChhhHHHHHHHHHHHHHHhC--CeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccc
Confidence            33333336899999999999999999999999999996  56999999999999999999999  999999998832 23


Q ss_pred             ccccCCCCCHHHHHHHHHHh
Q 026412          110 GEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus       110 ~~~~~g~~~~~~l~~~l~~~  129 (239)
                      .....|..+.+++.+|+.+.
T Consensus        83 ~~~~~~~~~~~~l~~fi~~~  102 (103)
T cd02982          83 YLMPEEELTAESLEEFVEDF  102 (103)
T ss_pred             cCCCccccCHHHHHHHHHhh
Confidence            23333445999999999764

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=99.61  E-value=1.3e-14  Score=109.41  Aligned_cols=90  Identities=20%  Similarity=0.297  Sum_probs=67.6

Q ss_pred             HhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc------------hhHH-HHc---CCCCCCe
Q 026412           36 EVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY------------KDLA-EKY---GVSGFPT   99 (239)
Q Consensus        36 ~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~------------~~l~-~~~---~i~~~Pt   99 (239)
                      .+..+++.+|+|||+||++|++..|.++++++++.    +.+..|+.+..            .... ..|   ++.++||
T Consensus        46 ~~~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~----~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPT  121 (153)
T TIGR02738        46 HANQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG----LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPA  121 (153)
T ss_pred             hhhcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC----CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCe
Confidence            34456778999999999999999999999999873    44545554421            2333 345   7899999


Q ss_pred             EEEEeCCCcC-ccccCCCCCHHHHHHHHHHh
Q 026412          100 LKFFPKGNKD-GEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus       100 ~~~~~~g~~~-~~~~~g~~~~~~l~~~l~~~  129 (239)
                      .+++++.|.. ...+.|..+.+++.+.+.+.
T Consensus       122 t~LID~~G~~i~~~~~G~~s~~~l~~~I~~l  152 (153)
T TIGR02738       122 TFLVNVNTRKAYPVLQGAVDEAELANRMDEI  152 (153)
T ss_pred             EEEEeCCCCEEEEEeecccCHHHHHHHHHHh
Confidence            9999876553 44678999999998888754

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.61  E-value=5.6e-15  Score=99.91  Aligned_cols=80  Identities=25%  Similarity=0.429  Sum_probs=69.9

Q ss_pred             EEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHH
Q 026412           43 ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDF  122 (239)
Q Consensus        43 vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l  122 (239)
                      .+..||++||++|+.+.|.++++++.+.  ..+.+..||++++++++++|++.++|++++  +| +  .++.|..+.+++
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g-~--~~~~G~~~~~~l   74 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMG--DAVEVEYINVMENPQKAMEYGIMAVPAIVI--NG-D--VEFIGAPTKEEL   74 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhc--CceEEEEEeCccCHHHHHHcCCccCCEEEE--CC-E--EEEecCCCHHHH
Confidence            4678999999999999999999999875  358899999999999999999999999875  44 3  377899999999


Q ss_pred             HHHHHHh
Q 026412          123 VSFINEK  129 (239)
Q Consensus       123 ~~~l~~~  129 (239)
                      .+++.+.
T Consensus        75 ~~~l~~~   81 (82)
T TIGR00411        75 VEAIKKR   81 (82)
T ss_pred             HHHHHhh
Confidence            9998764

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=99.60  E-value=3.3e-15  Score=107.98  Aligned_cols=100  Identities=21%  Similarity=0.430  Sum_probs=71.3

Q ss_pred             hhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCC--CCeEEEEeCCC
Q 026412           30 EDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG--FPTLKFFPKGN  107 (239)
Q Consensus        30 ~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~--~Pt~~~~~~g~  107 (239)
                      .+.+.....++++++|.|||+||++|+.+.|.+.+.........++..+.+|.+.. .....|++.+  +||+++|.++|
T Consensus         9 ~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~-~~~~~~~~~g~~vPt~~f~~~~G   87 (117)
T cd02959           9 EDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEE-PKDEEFSPDGGYIPRILFLDPSG   87 (117)
T ss_pred             HHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCC-chhhhcccCCCccceEEEECCCC
Confidence            34455555789999999999999999999999999877654333455544444322 4567899986  99999997555


Q ss_pred             cCcc---ccCCCCCHHHHHHHHHHhh
Q 026412          108 KDGE---EYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus       108 ~~~~---~~~g~~~~~~l~~~l~~~~  130 (239)
                      +...   ...|.++.+.+.+.+....
T Consensus        88 k~~~~~~~~~~~~~~~~f~~~~~~~~  113 (117)
T cd02959          88 DVHPEIINKKGNPNYKYFYSSAAQVT  113 (117)
T ss_pred             CCchhhccCCCCccccccCCCHHHHH
Confidence            5543   5566777777776666544

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.60  E-value=5.7e-15  Score=106.21  Aligned_cols=77  Identities=21%  Similarity=0.409  Sum_probs=66.6

Q ss_pred             ChhhHHHHhcC--CCcEEEEEEC-------CCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-------chhHHHHc
Q 026412           29 TEDNFEKEVGQ--DRGALVEFYA-------PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------YKDLAEKY   92 (239)
Q Consensus        29 ~~~~f~~~~~~--~k~vlV~F~a-------~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-------~~~l~~~~   92 (239)
                      +.++|.+.+..  +++++|.|||       +||++|+.+.|.+++++..++  +++.++.||+++       +.+++.+|
T Consensus         8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~--~~v~fv~Vdvd~~~~w~d~~~~~~~~~   85 (119)
T cd02952           8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP--EDCVFIYCDVGDRPYWRDPNNPFRTDP   85 (119)
T ss_pred             CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC--CCCEEEEEEcCCcccccCcchhhHhcc
Confidence            46778888843  6899999999       999999999999999999986  358899999975       45899999


Q ss_pred             CCC-CCCeEEEEeCCC
Q 026412           93 GVS-GFPTLKFFPKGN  107 (239)
Q Consensus        93 ~i~-~~Pt~~~~~~g~  107 (239)
                      +|. ++||+++|+.|+
T Consensus        86 ~I~~~iPT~~~~~~~~  101 (119)
T cd02952          86 KLTTGVPTLLRWKTPQ  101 (119)
T ss_pred             CcccCCCEEEEEcCCc
Confidence            998 999999997663

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.59  E-value=1.8e-14  Score=127.30  Aligned_cols=89  Identities=20%  Similarity=0.334  Sum_probs=75.3

Q ss_pred             cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEE----------------------------eCccchhHH
Q 026412           38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL----------------------------DADKYKDLA   89 (239)
Q Consensus        38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~v----------------------------d~~~~~~l~   89 (239)
                      .++++++|+|||+||++|+.+.|.+.++++.+..+ ++.++.|                            ++|.+..++
T Consensus        54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~-~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~la  132 (521)
T PRK14018         54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS-SANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLA  132 (521)
T ss_pred             cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC-CeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHH
Confidence            57899999999999999999999999999988632 3555443                            344566899


Q ss_pred             HHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHH
Q 026412           90 EKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN  127 (239)
Q Consensus        90 ~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~  127 (239)
                      +.|+|.++|+++++.++|+....+.|..+.+++.++|+
T Consensus       133 k~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie  170 (521)
T PRK14018        133 QSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIR  170 (521)
T ss_pred             HHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence            99999999999888766688888999999999999998

>PTZ00062 glutaredoxin; Provisional

Probab=99.58  E-value=1.7e-14  Score=113.24  Aligned_cols=91  Identities=10%  Similarity=0.144  Sum_probs=79.6

Q ss_pred             ChhhHHHHhcCC-CcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCC
Q 026412           29 TEDNFEKEVGQD-RGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN  107 (239)
Q Consensus        29 ~~~~f~~~~~~~-k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~  107 (239)
                      +.+.|.+.+.++ ..++++|||+||++|+.+.|.+.++++.++   ++.|+.||.+        |+|.++|++++|++| 
T Consensus         5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~---~~~F~~V~~d--------~~V~~vPtfv~~~~g-   72 (204)
T PTZ00062          5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP---SLEFYVVNLA--------DANNEYGVFEFYQNS-   72 (204)
T ss_pred             CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC---CcEEEEEccc--------cCcccceEEEEEECC-
Confidence            467788888544 789999999999999999999999999985   7999999987        999999999999987 


Q ss_pred             cCccccCCCCCHHHHHHHHHHhhCC
Q 026412          108 KDGEEYGGGRDLEDFVSFINEKCGT  132 (239)
Q Consensus       108 ~~~~~~~g~~~~~~l~~~l~~~~~~  132 (239)
                      +...++.|. ++..+..++.+..++
T Consensus        73 ~~i~r~~G~-~~~~~~~~~~~~~~~   96 (204)
T PTZ00062         73 QLINSLEGC-NTSTLVSFIRGWAQK   96 (204)
T ss_pred             EEEeeeeCC-CHHHHHHHHHHHcCC
Confidence            667788876 699999999888764

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.58  E-value=5e-14  Score=108.77  Aligned_cols=103  Identities=18%  Similarity=0.404  Sum_probs=82.9

Q ss_pred             EEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc---------------------
Q 026412           26 VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------   84 (239)
Q Consensus        26 ~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~---------------------   84 (239)
                      ..++++.+.-..-.+++++|+||++||++|+...|.+.++.++++.. ++.++.|+++.                     
T Consensus        47 ~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~-~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d  125 (173)
T PRK03147         47 TDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK-GVEIIAVNVDETELAVKNFVNRYGLTFPVAID  125 (173)
T ss_pred             ecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC-CeEEEEEEcCCCHHHHHHHHHHhCCCceEEEC
Confidence            34555555433345789999999999999999999999999998743 47777777652                     


Q ss_pred             -chhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHh
Q 026412           85 -YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus        85 -~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~  129 (239)
                       +..+++.|++.++|++++++++|+....+.|..+.+++.+++++.
T Consensus       126 ~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~  171 (173)
T PRK03147        126 KGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI  171 (173)
T ss_pred             CcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence             357889999999999999987777777889999999999998753

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.58  E-value=4.7e-14  Score=110.26  Aligned_cols=88  Identities=18%  Similarity=0.265  Sum_probs=71.7

Q ss_pred             cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc-----------------------hhHHHHcCC
Q 026412           38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-----------------------KDLAEKYGV   94 (239)
Q Consensus        38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~i   94 (239)
                      ..+++++|+||++||++|++..|.+.++.+.     ++.++.|+.++.                       ..++..|++
T Consensus        66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~-----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv  140 (185)
T PRK15412         66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGV  140 (185)
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc-----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCC
Confidence            4688999999999999999999999988653     466777765432                       135567899


Q ss_pred             CCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412           95 SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus        95 ~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      .++|+.++++++|+....+.|..+.+.+.+++...+
T Consensus       141 ~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~  176 (185)
T PRK15412        141 YGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLW  176 (185)
T ss_pred             CcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHH
Confidence            999998888877788888999999999988887765

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.58  E-value=1.1e-14  Score=116.39  Aligned_cols=101  Identities=25%  Similarity=0.388  Sum_probs=80.6

Q ss_pred             hhhHHHHhcCCCcEEEEEEC---CCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCC
Q 026412           30 EDNFEKEVGQDRGALVEFYA---PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG  106 (239)
Q Consensus        30 ~~~f~~~~~~~k~vlV~F~a---~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g  106 (239)
                      ...|.+.+.++. .++.|++   +||++|+.+.|.++++++.+. .-.+.++.+|.+++++++++|+|.++||+++|++|
T Consensus        10 ~~~~~~~~~~~~-~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~-~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g   87 (215)
T TIGR02187        10 KELFLKELKNPV-EIVVFTDNDKEGCQYCKETEQLLEELSEVSP-KLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEG   87 (215)
T ss_pred             HHHHHHhcCCCe-EEEEEcCCCCCCCCchHHHHHHHHHHHhhCC-CceEEEEecCCcccHHHHHHcCCCccCEEEEEeCC
Confidence            344444454444 4556777   999999999999999999984 22366777787799999999999999999999988


Q ss_pred             CcCccccCCCCCHHHHHHHHHHhhCC
Q 026412          107 NKDGEEYGGGRDLEDFVSFINEKCGT  132 (239)
Q Consensus       107 ~~~~~~~~g~~~~~~l~~~l~~~~~~  132 (239)
                      .....++.|..+.+++.+||...++.
T Consensus        88 ~~~~~~~~G~~~~~~l~~~i~~~~~~  113 (215)
T TIGR02187        88 KDGGIRYTGIPAGYEFAALIEDIVRV  113 (215)
T ss_pred             eeeEEEEeecCCHHHHHHHHHHHHHh
Confidence            44345899999999999999988654

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=99.54  E-value=5.7e-14  Score=126.99  Aligned_cols=98  Identities=24%  Similarity=0.514  Sum_probs=80.9

Q ss_pred             ChhhHHHHh----cCCCcEEEEEECCCChHHhhHhHHH---HHHHHHccCCCCeEEEEEeCcc----chhHHHHcCCCCC
Q 026412           29 TEDNFEKEV----GQDRGALVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDADK----YKDLAEKYGVSGF   97 (239)
Q Consensus        29 ~~~~f~~~~----~~~k~vlV~F~a~wC~~C~~~~~~~---~~~a~~~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~   97 (239)
                      +.+++++.+    .++|+++|+|||+||++|+.+++..   .++.+.++   ++.++++|+++    +.+++++|++.++
T Consensus       459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~---~~~~v~vDvt~~~~~~~~l~~~~~v~g~  535 (571)
T PRK00293        459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA---DTVLLQADVTANNAEDVALLKHYNVLGL  535 (571)
T ss_pred             CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc---CCEEEEEECCCCChhhHHHHHHcCCCCC
Confidence            456677766    3478999999999999999999875   66777764   58899999974    3688999999999


Q ss_pred             CeEEEEeCCCcC--ccccCCCCCHHHHHHHHHHh
Q 026412           98 PTLKFFPKGNKD--GEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus        98 Pt~~~~~~g~~~--~~~~~g~~~~~~l~~~l~~~  129 (239)
                      ||+++|+++|+.  ..++.|..+.+++.+++++.
T Consensus       536 Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~  569 (571)
T PRK00293        536 PTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL  569 (571)
T ss_pred             CEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence            999999865555  46788999999999999874

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=99.53  E-value=2.4e-14  Score=102.64  Aligned_cols=87  Identities=31%  Similarity=0.528  Sum_probs=65.0

Q ss_pred             cCCCcEEEEEECCCChHHhhHhHHHHHHHH---HccCCCCeEEEEEeCccc--------------------hhHHHHcCC
Q 026412           38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAA---AFTLEDDVVVANLDADKY--------------------KDLAEKYGV   94 (239)
Q Consensus        38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~---~~~~~~~v~~~~vd~~~~--------------------~~l~~~~~i   94 (239)
                      .+++++++.||+|||++|+.+.+.+.+..+   .+.  .++.++.++++..                    .+++++|+|
T Consensus         3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v   80 (112)
T PF13098_consen    3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLK--DDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV   80 (112)
T ss_dssp             TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEH--CECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhh--cCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC
Confidence            467899999999999999999999886443   332  3577888877632                    358999999


Q ss_pred             CCCCeEEEEeCCCcCccccCCCCCHHHHHHHH
Q 026412           95 SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI  126 (239)
Q Consensus        95 ~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l  126 (239)
                      +++||++++++.|+....+.|..++++|.++|
T Consensus        81 ~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   81 NGTPTIVFLDKDGKIVYRIPGYLSPEELLKML  112 (112)
T ss_dssp             -SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred             CccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence            99999999986667777889999999998875

...

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.53  E-value=7.9e-14  Score=111.54  Aligned_cols=96  Identities=28%  Similarity=0.377  Sum_probs=79.2

Q ss_pred             EEcChhhHHHHhcCCCcE-EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEe
Q 026412           26 VVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFP  104 (239)
Q Consensus        26 ~~l~~~~f~~~~~~~k~v-lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~  104 (239)
                      ..++..+.+.+-...+++ ++.||++||++|+.+.|.+++++...   +++.+..+|.+.+++++.+|+|.++||++++.
T Consensus       118 ~~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~---~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~  194 (215)
T TIGR02187       118 PGLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN---DKILGEMIEANENPDLAEKYGVMSVPKIVINK  194 (215)
T ss_pred             CCCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc---CceEEEEEeCCCCHHHHHHhCCccCCEEEEec
Confidence            456666666665445554 44599999999999999999998874   37888999999999999999999999999986


Q ss_pred             CCCcCccccCCCCCHHHHHHHHHH
Q 026412          105 KGNKDGEEYGGGRDLEDFVSFINE  128 (239)
Q Consensus       105 ~g~~~~~~~~g~~~~~~l~~~l~~  128 (239)
                      +| .   .+.|..+.+++.+|+.+
T Consensus       195 ~~-~---~~~G~~~~~~l~~~l~~  214 (215)
T TIGR02187       195 GV-E---EFVGAYPEEQFLEYILS  214 (215)
T ss_pred             CC-E---EEECCCCHHHHHHHHHh
Confidence            55 2   28899999999999975

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=99.51  E-value=1.2e-13  Score=100.47  Aligned_cols=81  Identities=23%  Similarity=0.353  Sum_probs=65.0

Q ss_pred             ChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHH---HHHHHHccCCCCeEEEEEeCccchhHHHH--------cCCCCC
Q 026412           29 TEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDADKYKDLAEK--------YGVSGF   97 (239)
Q Consensus        29 ~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~---~~~a~~~~~~~~v~~~~vd~~~~~~l~~~--------~~i~~~   97 (239)
                      +++.+.+...++|+++|.|+++||++|+.|.+..   .++++.+.  .+++++.+|.+++++++++        |++.++
T Consensus         4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~--~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~   81 (124)
T cd02955           4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILN--ENFVPIKVDREERPDVDKIYMNAAQAMTGQGGW   81 (124)
T ss_pred             CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHh--CCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCC
Confidence            5677888889999999999999999999998742   34555542  3799999999988777653        589999


Q ss_pred             CeEEEEeCCCcCcc
Q 026412           98 PTLKFFPKGNKDGE  111 (239)
Q Consensus        98 Pt~~~~~~g~~~~~  111 (239)
                      |+++++..+|+...
T Consensus        82 Pt~vfl~~~G~~~~   95 (124)
T cd02955          82 PLNVFLTPDLKPFF   95 (124)
T ss_pred             CEEEEECCCCCEEe
Confidence            99999988766543

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>PHA02125 thioredoxin-like protein

Probab=99.48  E-value=2.1e-13  Score=90.63  Aligned_cols=70  Identities=24%  Similarity=0.490  Sum_probs=55.1

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCC-CCHHHH
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG-RDLEDF  122 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~-~~~~~l  122 (239)
                      ++.||++||++|+.+.|.++++.        +.++.||++.+.+++++|+|.++||++   .| +...++.|. ++..++
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~--------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g-~~~~~~~G~~~~~~~l   69 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE--------YTYVDVDTDEGVELTAKHHIRSLPTLV---NT-STLDRFTGVPRNVAEL   69 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh--------heEEeeeCCCCHHHHHHcCCceeCeEE---CC-EEEEEEeCCCCcHHHH
Confidence            78999999999999999987652        457899999999999999999999987   33 344566674 455555


Q ss_pred             HHH
Q 026412          123 VSF  125 (239)
Q Consensus       123 ~~~  125 (239)
                      .+-
T Consensus        70 ~~~   72 (75)
T PHA02125         70 KEK   72 (75)
T ss_pred             HHH
Confidence            543

>TIGR02740 TraF-like TraF-like protein

Probab=99.46  E-value=6.3e-13  Score=109.49  Aligned_cols=89  Identities=16%  Similarity=0.192  Sum_probs=72.5

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-----------chhHHHHcCCCCCCeEEEEeC-C
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-----------YKDLAEKYGVSGFPTLKFFPK-G  106 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-----------~~~l~~~~~i~~~Pt~~~~~~-g  106 (239)
                      .+++++|+||++||++|+.+.|.+.++++.+.    +.+..|++|.           +..++++|||.++|+++++++ |
T Consensus       165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg----~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~  240 (271)
T TIGR02740       165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG----IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDP  240 (271)
T ss_pred             cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC----cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCC
Confidence            47899999999999999999999999999984    5555555543           356899999999999999987 4


Q ss_pred             CcCccccCCCCCHHHHHHHHHHhhC
Q 026412          107 NKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus       107 ~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      +.......|..+.+++.+.+...+.
T Consensus       241 ~~v~~v~~G~~s~~eL~~~i~~~a~  265 (271)
T TIGR02740       241 NQFTPIGFGVMSADELVDRILLAAH  265 (271)
T ss_pred             CEEEEEEeCCCCHHHHHHHHHHHhc
Confidence            4444445688999999999887654

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.45  E-value=4e-13  Score=98.51  Aligned_cols=88  Identities=17%  Similarity=0.250  Sum_probs=68.0

Q ss_pred             hhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEe-----------------------Cccchh
Q 026412           31 DNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD-----------------------ADKYKD   87 (239)
Q Consensus        31 ~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd-----------------------~~~~~~   87 (239)
                      ..+......+++++|.||++||++|+.+.|.++++.+.+    ++.++.|+                       +|.+..
T Consensus        16 ~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~----~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   91 (127)
T cd03010          16 KTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG----RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGR   91 (127)
T ss_pred             ccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc----CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcch
Confidence            334333345789999999999999999999999998775    25555554                       344567


Q ss_pred             HHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHH
Q 026412           88 LAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDF  122 (239)
Q Consensus        88 l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l  122 (239)
                      +++.|++.++|+.+++.++|+....+.|..+.+.+
T Consensus        92 ~~~~~~v~~~P~~~~ld~~G~v~~~~~G~~~~~~~  126 (127)
T cd03010          92 VGIDLGVYGVPETFLIDGDGIIRYKHVGPLTPEVW  126 (127)
T ss_pred             HHHhcCCCCCCeEEEECCCceEEEEEeccCChHhc
Confidence            88899999999888887666778888898776654

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=99.44  E-value=1.1e-13  Score=113.81  Aligned_cols=171  Identities=18%  Similarity=0.208  Sum_probs=114.5

Q ss_pred             CCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhh-----HhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCC
Q 026412           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKN-----LAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG   96 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~-----~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~   96 (239)
                      ..++..|+.+||.+++.+.+..+|+|+.|--..--.     +...+-+++.+.-.+.++.|+.||..+...+++++|+..
T Consensus        33 kDRVi~LneKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E  112 (383)
T PF01216_consen   33 KDRVIDLNEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEE  112 (383)
T ss_dssp             S--CEEE-TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--S
T ss_pred             ccceEEcchhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCccc
Confidence            357999999999999998999999999887432222     223344455444345689999999999999999999999


Q ss_pred             CCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhCCCCCCCCCcccccchhh-hhhHHHHHHHhccchhHHHHHHHHHhh
Q 026412           97 FPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVA-SLDALVKEFVAASGDEKKAVFSKIERG  175 (239)
Q Consensus        97 ~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~  175 (239)
                      .+++++|++|  ....|.|.++++.++.||-.........+++.....++.. .-+..+++|+++.+++....++++++.
T Consensus       113 ~~SiyVfkd~--~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s~~yk~FeeAAe~  190 (383)
T PF01216_consen  113 EGSIYVFKDG--EVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSEDSEHYKEFEEAAEH  190 (383)
T ss_dssp             TTEEEEEETT--EEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTSHHHHHHHHHHHH
T ss_pred             cCcEEEEECC--cEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCCCcHHHHHHHHHHHh
Confidence            9999999988  5688999999999999999999877766665544443333 113455688888777788888888887


Q ss_pred             hhhhhhhhhhhhHHHHHHHhhh
Q 026412          176 VEVLEGSTARHGKIYLKVAKNY  197 (239)
Q Consensus       176 ~~~~~~~~~~~~~~y~~~~~k~  197 (239)
                      +..+-   ..+|.+-.++.+++
T Consensus       191 F~p~I---kFfAtfd~~vAk~L  209 (383)
T PF01216_consen  191 FQPYI---KFFATFDKKVAKKL  209 (383)
T ss_dssp             CTTTS---EEEEE-SHHHHHHH
T ss_pred             hcCce---eEEEEecchhhhhc
Confidence            65442   23444445555554

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.44  E-value=6.6e-13  Score=97.90  Aligned_cols=72  Identities=17%  Similarity=0.381  Sum_probs=58.0

Q ss_pred             cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCC-CCeEEEEEeCccc------------------------hhHHHHc
Q 026412           38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKY------------------------KDLAEKY   92 (239)
Q Consensus        38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~-~~v~~~~vd~~~~------------------------~~l~~~~   92 (239)
                      -++++++|+||++||++|+.+.|.+.++.+.+... +++.++.|+++..                        ..+++.|
T Consensus        16 ~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (131)
T cd03009          16 LEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTF   95 (131)
T ss_pred             hCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHc
Confidence            35789999999999999999999999998888643 3566666665522                        3578899


Q ss_pred             CCCCCCeEEEEeCCCcC
Q 026412           93 GVSGFPTLKFFPKGNKD  109 (239)
Q Consensus        93 ~i~~~Pt~~~~~~g~~~  109 (239)
                      ++.++|++++++++|+.
T Consensus        96 ~v~~~P~~~lid~~G~i  112 (131)
T cd03009          96 KIEGIPTLIILDADGEV  112 (131)
T ss_pred             CCCCCCEEEEECCCCCE
Confidence            99999999999866554

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.44  E-value=5.6e-13  Score=99.43  Aligned_cols=71  Identities=20%  Similarity=0.336  Sum_probs=57.4

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCC------CCeEEEEEeCccc-------------------------hh
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLE------DDVVVANLDADKY-------------------------KD   87 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~------~~v~~~~vd~~~~-------------------------~~   87 (239)
                      ++++++|+|||+||++|+++.|.+.++.+.+..+      .++.++.|+.+.+                         ..
T Consensus        24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~  103 (146)
T cd03008          24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE  103 (146)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence            5799999999999999999999999988766532      2588888876532                         25


Q ss_pred             HHHHcCCCCCCeEEEEeCCCcC
Q 026412           88 LAEKYGVSGFPTLKFFPKGNKD  109 (239)
Q Consensus        88 l~~~~~i~~~Pt~~~~~~g~~~  109 (239)
                      ++.+|++.++|+.+++++.|+.
T Consensus       104 l~~~y~v~~iPt~vlId~~G~V  125 (146)
T cd03008         104 LEAQFSVEELPTVVVLKPDGDV  125 (146)
T ss_pred             HHHHcCCCCCCEEEEECCCCcE
Confidence            7788999999999999876554

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.43  E-value=1.2e-12  Score=91.04  Aligned_cols=69  Identities=30%  Similarity=0.643  Sum_probs=57.3

Q ss_pred             CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc-------------------------hhHHHHcCC
Q 026412           40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-------------------------KDLAEKYGV   94 (239)
Q Consensus        40 ~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~-------------------------~~l~~~~~i   94 (239)
                      +|+++|.||++||++|++..|.+.++.+.++.++++.++.|..|..                         ..+.+.|+|
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i   80 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI   80 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence            5899999999999999999999999999998666788888877642                         268889999


Q ss_pred             CCCCeEEEEeCCCc
Q 026412           95 SGFPTLKFFPKGNK  108 (239)
Q Consensus        95 ~~~Pt~~~~~~g~~  108 (239)
                      .++|++++++++|+
T Consensus        81 ~~iP~~~lld~~G~   94 (95)
T PF13905_consen   81 NGIPTLVLLDPDGK   94 (95)
T ss_dssp             TSSSEEEEEETTSB
T ss_pred             CcCCEEEEECCCCC
Confidence            99999999987754

...

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.43  E-value=9.1e-13  Score=101.91  Aligned_cols=89  Identities=19%  Similarity=0.261  Sum_probs=71.6

Q ss_pred             cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeC-----------------------ccchhHHHHcCC
Q 026412           38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA-----------------------DKYKDLAEKYGV   94 (239)
Q Consensus        38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~-----------------------~~~~~l~~~~~i   94 (239)
                      .++++++|+||++||++|+++.|.++++.+.     ++.++.|+.                       |.+..+.+.|++
T Consensus        61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v  135 (173)
T TIGR00385        61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD-----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGV  135 (173)
T ss_pred             cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc-----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCC
Confidence            4678999999999999999999999988753     354555543                       333467788999


Q ss_pred             CCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412           95 SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus        95 ~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      .++|+.++++++|+....+.|..+.+++.+++++.++
T Consensus       136 ~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~  172 (173)
T TIGR00385       136 YGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME  172 (173)
T ss_pred             eeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence            9999888887666777888999999999999988753

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.41  E-value=1.2e-12  Score=96.80  Aligned_cols=71  Identities=20%  Similarity=0.432  Sum_probs=57.5

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCC-CCeEEEEEeCccc-------------------------hhHHHHc
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKY-------------------------KDLAEKY   92 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~-~~v~~~~vd~~~~-------------------------~~l~~~~   92 (239)
                      ++++++|.||++||++|+...|.+.++++.++.+ .++.++.|+++..                         ..+.+.|
T Consensus        16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   95 (132)
T cd02964          16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF   95 (132)
T ss_pred             CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence            5799999999999999999999999999888654 3577777766532                         2456779


Q ss_pred             CCCCCCeEEEEeCCCcC
Q 026412           93 GVSGFPTLKFFPKGNKD  109 (239)
Q Consensus        93 ~i~~~Pt~~~~~~g~~~  109 (239)
                      ++.++|++++++++|+.
T Consensus        96 ~v~~iPt~~lid~~G~i  112 (132)
T cd02964          96 KVEGIPTLVVLKPDGDV  112 (132)
T ss_pred             CCCCCCEEEEECCCCCE
Confidence            99999999999866553

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=99.39  E-value=1.8e-12  Score=86.33  Aligned_cols=73  Identities=15%  Similarity=0.251  Sum_probs=57.2

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCC-CCHHHH
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG-RDLEDF  122 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~-~~~~~l  122 (239)
                      -|.||++||++|+.+.|.++++++++.  ..+.+..||   +.+.+.+|++.++|++++  +| +..  +.|. .+.+++
T Consensus         2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~--~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G-~~~--~~G~~~~~~~l   71 (76)
T TIGR00412         2 KIQIYGTGCANCQMTEKNVKKAVEELG--IDAEFEKVT---DMNEILEAGVTATPGVAV--DG-ELV--IMGKIPSKEEI   71 (76)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHHHHcC--CCeEEEEeC---CHHHHHHcCCCcCCEEEE--CC-EEE--EEeccCCHHHH
Confidence            378999999999999999999999985  357777776   234478899999999988  55 333  6674 466777


Q ss_pred             HHHH
Q 026412          123 VSFI  126 (239)
Q Consensus       123 ~~~l  126 (239)
                      .+++
T Consensus        72 ~~~l   75 (76)
T TIGR00412        72 KEIL   75 (76)
T ss_pred             HHHh
Confidence            7765

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=99.39  E-value=2.3e-12  Score=93.79  Aligned_cols=93  Identities=26%  Similarity=0.383  Sum_probs=71.3

Q ss_pred             EcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEe---------------------Cccc
Q 026412           27 VLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD---------------------ADKY   85 (239)
Q Consensus        27 ~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd---------------------~~~~   85 (239)
                      .++++.+......+++++|.||++||++|+.+.|.+.++++.+.    +..+.+|                     .+.+
T Consensus         7 ~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~   82 (123)
T cd03011           7 TLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP----VVSVALRSGDDGAVARFMQKKGYGFPVINDPD   82 (123)
T ss_pred             cCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC----EEEEEccCCCHHHHHHHHHHcCCCccEEECCC
Confidence            34455555555556899999999999999999999999987742    3222222                     1344


Q ss_pred             hhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHH
Q 026412           86 KDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVS  124 (239)
Q Consensus        86 ~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~  124 (239)
                      .+++++|+|.++|+++++++++ ....+.|..+.+.+.+
T Consensus        83 ~~~~~~~~i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~  120 (123)
T cd03011          83 GVISARWGVSVTPAIVIVDPGG-IVFVTTGVTSEWGLRL  120 (123)
T ss_pred             cHHHHhCCCCcccEEEEEcCCC-eEEEEeccCCHHHHHh
Confidence            6799999999999999999886 6677889888888764

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=99.37  E-value=1.9e-11  Score=86.34  Aligned_cols=108  Identities=24%  Similarity=0.442  Sum_probs=87.2

Q ss_pred             CCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHH-HHccCCCCeEEEEEeCc-----cchhHHHHcCCC
Q 026412           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVA-AAFTLEDDVVVANLDAD-----KYKDLAEKYGVS   95 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a-~~~~~~~~v~~~~vd~~-----~~~~l~~~~~i~   95 (239)
                      ..+.+.|+.-+|++++.+.+.++|.|-...  |--+-+.+|.++| +.....+++.++.|.+.     +|.+|+++|++.
T Consensus         3 ~~G~v~LD~~tFdKvi~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~   80 (126)
T PF07912_consen    3 CKGCVPLDELTFDKVIPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKID   80 (126)
T ss_dssp             STTSEEESTTHHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-S
T ss_pred             cCceeeccceehhheeccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCC
Confidence            356789999999999999999999997544  3346688999999 66666789999999875     578999999995


Q ss_pred             --CCCeEEEEeCCCcCcccc--CCCCCHHHHHHHHHHhhC
Q 026412           96 --GFPTLKFFPKGNKDGEEY--GGGRDLEDFVSFINEKCG  131 (239)
Q Consensus        96 --~~Pt~~~~~~g~~~~~~~--~g~~~~~~l~~~l~~~~~  131 (239)
                        .+|.+++|.+|.+.+.+|  .|+.+.+++..|+.++++
T Consensus        81 ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~  120 (126)
T PF07912_consen   81 KEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG  120 (126)
T ss_dssp             CCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred             cccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence              699999999777888988  889999999999998764

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=99.37  E-value=2.2e-12  Score=83.72  Aligned_cols=57  Identities=26%  Similarity=0.550  Sum_probs=51.2

Q ss_pred             EEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEE
Q 026412           43 ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF  102 (239)
Q Consensus        43 vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~  102 (239)
                      -++.||++||++|+.+.+.+++++...   +++.+..+|++++++++++|++.++|++++
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~---~~i~~~~id~~~~~~l~~~~~i~~vPti~i   58 (67)
T cd02973           2 NIEVFVSPTCPYCPDAVQAANRIAALN---PNISAEMIDAAEFPDLADEYGVMSVPAIVI   58 (67)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHhC---CceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence            367899999999999999999998764   369999999999999999999999999855

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=99.37  E-value=3e-12  Score=91.18  Aligned_cols=86  Identities=27%  Similarity=0.509  Sum_probs=69.4

Q ss_pred             ChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc-----------------------
Q 026412           29 TEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-----------------------   85 (239)
Q Consensus        29 ~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~-----------------------   85 (239)
                      +...+...-..+++++|.||++||++|+...+.+.++.+.+. ++++.++.|+++.+                       
T Consensus         8 ~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~   86 (116)
T cd02966           8 DGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYK-DDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPD   86 (116)
T ss_pred             CCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhC-CCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCc
Confidence            333333333347899999999999999999999999999986 45799999999875                       


Q ss_pred             hhHHHHcCCCCCCeEEEEeCCCcCccccCC
Q 026412           86 KDLAEKYGVSGFPTLKFFPKGNKDGEEYGG  115 (239)
Q Consensus        86 ~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g  115 (239)
                      ..+.+.|++.++|++++++++|+....+.|
T Consensus        87 ~~~~~~~~~~~~P~~~l~d~~g~v~~~~~g  116 (116)
T cd02966          87 GELAKAYGVRGLPTTFLIDRDGRIRARHVG  116 (116)
T ss_pred             chHHHhcCcCccceEEEECCCCcEEEEecC
Confidence            678999999999999999877666666554

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=99.37  E-value=1.2e-11  Score=94.98  Aligned_cols=85  Identities=15%  Similarity=0.239  Sum_probs=68.1

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-------------chhHHHHcCC--CCCCeEEEEeCCCc
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------------YKDLAEKYGV--SGFPTLKFFPKGNK  108 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-------------~~~l~~~~~i--~~~Pt~~~~~~g~~  108 (239)
                      +|+||++||++|++..|.+.+++++++    +.+..|+.|.             ...+.+.|++  .++|+.++++.+++
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~g----~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~  148 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQYG----FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTL  148 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHcC----CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCc
Confidence            888999999999999999999999973    5555555442             2336678995  69999999987766


Q ss_pred             Cc-cccCCCCCHHHHHHHHHHhhCC
Q 026412          109 DG-EEYGGGRDLEDFVSFINEKCGT  132 (239)
Q Consensus       109 ~~-~~~~g~~~~~~l~~~l~~~~~~  132 (239)
                      .. ..+.|..+.+++.+.+...+..
T Consensus       149 i~~~~~~G~~~~~~L~~~I~~ll~~  173 (181)
T PRK13728        149 EALPLLQGATDAAGFMARMDTVLQM  173 (181)
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHhh
Confidence            54 4689999999999988887654

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=99.32  E-value=2.5e-11  Score=87.35  Aligned_cols=92  Identities=16%  Similarity=0.186  Sum_probs=75.7

Q ss_pred             hcCCCcEEEEEECCCChHHhhHhHH-H--HHHHHHccCCCCeEEEEEeCc--cchhHHHHcCCCCCCeEEEEeC-CCcCc
Q 026412           37 VGQDRGALVEFYAPWCGHCKNLAPT-Y--EKVAAAFTLEDDVVVANLDAD--KYKDLAEKYGVSGFPTLKFFPK-GNKDG  110 (239)
Q Consensus        37 ~~~~k~vlV~F~a~wC~~C~~~~~~-~--~~~a~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~Pt~~~~~~-g~~~~  110 (239)
                      ..++|+++|+|+++||++|+.+... |  .++.+.+.  .++++..+|.+  +...++..|++.++|+++++.+ +++..
T Consensus        14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~--~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l   91 (114)
T cd02958          14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIR--ENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVL   91 (114)
T ss_pred             HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHH--hCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEe
Confidence            3678999999999999999999764 3  33444443  36888888887  5678999999999999999987 66788


Q ss_pred             cccCCCCCHHHHHHHHHHhh
Q 026412          111 EEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus       111 ~~~~g~~~~~~l~~~l~~~~  130 (239)
                      .++.|..++++|...|++..
T Consensus        92 ~~~~G~~~~~~f~~~L~~~~  111 (114)
T cd02958          92 KVWSGNITPEDLLSQLIEFL  111 (114)
T ss_pred             EEEcCCCCHHHHHHHHHHHH
Confidence            89999999999999988754

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=99.32  E-value=2.6e-11  Score=93.70  Aligned_cols=84  Identities=14%  Similarity=0.060  Sum_probs=65.8

Q ss_pred             cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEE------EEEeCcc---------------------------
Q 026412           38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVV------ANLDADK---------------------------   84 (239)
Q Consensus        38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~------~~vd~~~---------------------------   84 (239)
                      -.+|+.+|+|||.||++|+..+|.+.+++..     ++.+      ..||.++                           
T Consensus        57 l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~-----~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vll  131 (184)
T TIGR01626        57 LAGKVRVVHHIAGRTSAKEXNASLIDAIKAA-----KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVL  131 (184)
T ss_pred             cCCCEEEEEEEecCCChhhccchHHHHHHHc-----CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEE
Confidence            4589999999999999999999999999654     2323      3444332                           


Q ss_pred             --chhHHHHcCCCCCCeE-EEEeCCCcCccccCCCCCHHHHHHHH
Q 026412           85 --YKDLAEKYGVSGFPTL-KFFPKGNKDGEEYGGGRDLEDFVSFI  126 (239)
Q Consensus        85 --~~~l~~~~~i~~~Pt~-~~~~~g~~~~~~~~g~~~~~~l~~~l  126 (239)
                        +..+...|++.++|+. +++++.|+....+.|..+.+++.+.+
T Consensus       132 D~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~  176 (184)
T TIGR01626       132 DDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI  176 (184)
T ss_pred             CCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence              2356778999999888 78888888888999999888887643

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=7.1e-11  Score=86.61  Aligned_cols=92  Identities=22%  Similarity=0.345  Sum_probs=73.0

Q ss_pred             HHHhcCCCcEEEEEECCCChHHhhHhHHH---HHHHHHccCCCCeEEEEEeCcc----------------chhHHHHcCC
Q 026412           34 EKEVGQDRGALVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDADK----------------YKDLAEKYGV   94 (239)
Q Consensus        34 ~~~~~~~k~vlV~F~a~wC~~C~~~~~~~---~~~a~~~~~~~~v~~~~vd~~~----------------~~~l~~~~~i   94 (239)
                      ..+...++..++.|.++.|++|.++...+   .++.+.+.  +++.++.+++..                ..+|++.|++
T Consensus        36 ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk--~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~v  113 (182)
T COG2143          36 KSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLK--EHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAV  113 (182)
T ss_pred             HhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHh--hCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhcc
Confidence            33447789999999999999999998765   33444443  357777777542                2489999999


Q ss_pred             CCCCeEEEEeCCCcCccccCCCCCHHHHHHHHH
Q 026412           95 SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN  127 (239)
Q Consensus        95 ~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~  127 (239)
                      +++|++++|++.|+......|...++++..-++
T Consensus       114 rstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlk  146 (182)
T COG2143         114 RSTPTFVFFDKTGKTILELPGYMPPEQFLAVLK  146 (182)
T ss_pred             ccCceEEEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence            999999999988888888899999999887665

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.28  E-value=1.8e-11  Score=117.79  Aligned_cols=92  Identities=17%  Similarity=0.325  Sum_probs=77.2

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeC---------------------------ccchhHHHH
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA---------------------------DKYKDLAEK   91 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~---------------------------~~~~~l~~~   91 (239)
                      ++++++|+|||+||++|+...|.++++.++++. .++.++.|.+                           |.+..+.++
T Consensus       419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~-~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~  497 (1057)
T PLN02919        419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKD-QPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRE  497 (1057)
T ss_pred             CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCC-CCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHh
Confidence            579999999999999999999999999999974 3577777632                           223467789


Q ss_pred             cCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412           92 YGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus        92 ~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      |+|.++|++++++++|+...++.|....+.+.+++...+.
T Consensus       498 ~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~  537 (1057)
T PLN02919        498 LGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ  537 (1057)
T ss_pred             cCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence            9999999999997666777889999999999999988754

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=99.28  E-value=7.1e-11  Score=85.99  Aligned_cols=108  Identities=13%  Similarity=0.205  Sum_probs=92.5

Q ss_pred             CcEEcChhhHHHHhcCCCcEEEEEEC--CCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE
Q 026412           24 DVVVLTEDNFEKEVGQDRGALVEFYA--PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  101 (239)
Q Consensus        24 ~v~~l~~~~f~~~~~~~k~vlV~F~a--~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  101 (239)
                      ++..++..+++..+......+++|-.  .-++.+-...-.+.+++++|. ..++.+++||+|+++.++.+|||.++||++
T Consensus        18 g~~~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~-~~~v~~akVDiD~~~~LA~~fgV~siPTLl   96 (132)
T PRK11509         18 GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFP-DYTWQVAIADLEQSEAIGDRFGVFRFPATL   96 (132)
T ss_pred             CCCccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhc-CCceEEEEEECCCCHHHHHHcCCccCCEEE
Confidence            66778889999999777667666654  347888888889999999995 345999999999999999999999999999


Q ss_pred             EEeCCCcCccccCCCCCHHHHHHHHHHhhCCC
Q 026412          102 FFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS  133 (239)
Q Consensus       102 ~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~  133 (239)
                      +|++| +....+.|.++.+++.+||++.++..
T Consensus        97 ~FkdG-k~v~~i~G~~~k~~l~~~I~~~L~~~  127 (132)
T PRK11509         97 VFTGG-NYRGVLNGIHPWAELINLMRGLVEPQ  127 (132)
T ss_pred             EEECC-EEEEEEeCcCCHHHHHHHHHHHhcCc
Confidence            99998 66788899999999999999988654

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=99.26  E-value=4.2e-11  Score=82.07  Aligned_cols=77  Identities=16%  Similarity=0.281  Sum_probs=63.3

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCC
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD  118 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~  118 (239)
                      .+..-+..|+++||++|....+.++++++.++   ++.+..+|.++.++++++|+|.++|++++  +| +  ..+.|..+
T Consensus        11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~---~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG-~--~~~~G~~~   82 (89)
T cd03026          11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP---NIEHEMIDGALFQDEVEERGIMSVPAIFL--NG-E--LFGFGRMT   82 (89)
T ss_pred             CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC---CceEEEEEhHhCHHHHHHcCCccCCEEEE--CC-E--EEEeCCCC
Confidence            34557888999999999999999999998864   69999999999999999999999999964  44 3  23457667


Q ss_pred             HHHHH
Q 026412          119 LEDFV  123 (239)
Q Consensus       119 ~~~l~  123 (239)
                      .++++
T Consensus        83 ~~e~~   87 (89)
T cd03026          83 LEEIL   87 (89)
T ss_pred             HHHHh
Confidence            66654

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=99.23  E-value=5.2e-11  Score=104.86  Aligned_cols=103  Identities=21%  Similarity=0.394  Sum_probs=81.7

Q ss_pred             EEcChh-hHHHHhcCC--CcEEEEEECCCChHHhhHhHHHH-HHHHHccCCCCeEEEEEeCccc----hhHHHHcCCCCC
Q 026412           26 VVLTED-NFEKEVGQD--RGALVEFYAPWCGHCKNLAPTYE-KVAAAFTLEDDVVVANLDADKY----KDLAEKYGVSGF   97 (239)
Q Consensus        26 ~~l~~~-~f~~~~~~~--k~vlV~F~a~wC~~C~~~~~~~~-~~a~~~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~   97 (239)
                      ...+.. ..++.+.++  |+|+|+|||+||-.||.+++..- +.....+ -.+++..++|.+.+    .++.++|++-+.
T Consensus       457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~-~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~  535 (569)
T COG4232         457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQA-LQDVVLLQADVTANDPAITALLKRLGVFGV  535 (569)
T ss_pred             hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHh-cCCeEEEEeeecCCCHHHHHHHHHcCCCCC
Confidence            344444 677777444  49999999999999999998754 3333332 34799999999843    578899999999


Q ss_pred             CeEEEEeCCCcCccccCCCCCHHHHHHHHHHh
Q 026412           98 PTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus        98 Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~  129 (239)
                      |++++|+.+++++....|..+.+.+.+++++.
T Consensus       536 P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~  567 (569)
T COG4232         536 PTYLFFGPQGSEPEILTGFLTADAFLEHLERA  567 (569)
T ss_pred             CEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence            99999997777777799999999999999875

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=99.23  E-value=6.3e-11  Score=86.76  Aligned_cols=77  Identities=17%  Similarity=0.284  Sum_probs=61.8

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc---------------------------cchhHHHH
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD---------------------------KYKDLAEK   91 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~---------------------------~~~~l~~~   91 (239)
                      ++++++|+||++||++|.+..|.+.++.++++. .++.++.|+.+                           ....+.+.
T Consensus        22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~-~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~  100 (126)
T cd03012          22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD-DGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRA  100 (126)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCc-CCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHH
Confidence            578999999999999999999999999999974 45777777541                           12356778


Q ss_pred             cCCCCCCeEEEEeCCCcCccccCCC
Q 026412           92 YGVSGFPTLKFFPKGNKDGEEYGGG  116 (239)
Q Consensus        92 ~~i~~~Pt~~~~~~g~~~~~~~~g~  116 (239)
                      |++.++|+.++++++|+....+.|.
T Consensus       101 ~~v~~~P~~~vid~~G~v~~~~~G~  125 (126)
T cd03012         101 YGNQYWPALYLIDPTGNVRHVHFGE  125 (126)
T ss_pred             hCCCcCCeEEEECCCCcEEEEEecC
Confidence            9999999999998776766666653

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=99.21  E-value=7e-11  Score=85.96  Aligned_cols=80  Identities=15%  Similarity=0.205  Sum_probs=54.7

Q ss_pred             HHHhcCCCcEEEEEECCCChHHhhHhHHH---HHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCc
Q 026412           34 EKEVGQDRGALVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDG  110 (239)
Q Consensus        34 ~~~~~~~k~vlV~F~a~wC~~C~~~~~~~---~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~  110 (239)
                      .....++|+++|.|+++||++|+.|...+   .++.+...  .+++.+.++.+....-....+ .++||++|++.+++..
T Consensus        17 ~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~--~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~vi   93 (130)
T cd02960          17 YKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQ--EDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLTVR   93 (130)
T ss_pred             HHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHH--hCeEEEEEEeccCCCCcCccC-cccCeEEEECCCCCCc
Confidence            33347899999999999999999998764   23333332  257777777652211111234 5899999998887777


Q ss_pred             cccCCC
Q 026412          111 EEYGGG  116 (239)
Q Consensus       111 ~~~~g~  116 (239)
                      .+..|.
T Consensus        94 ~~i~Gy   99 (130)
T cd02960          94 ADITGR   99 (130)
T ss_pred             cccccc
Confidence            776664

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=99.20  E-value=4.9e-12  Score=98.75  Aligned_cols=105  Identities=29%  Similarity=0.525  Sum_probs=92.5

Q ss_pred             CCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE
Q 026412           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  101 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  101 (239)
                      ...+..++.+|+..++.  .-+++.|+|||||.|+...|+|+.++.--.+ -.+.+++||++.++.+.-+|-+...|||+
T Consensus        23 ~s~~~~~~eenw~~~l~--gewmi~~~ap~~psc~~~~~~~~~~a~~s~d-L~v~va~VDvt~npgLsGRF~vtaLptIY   99 (248)
T KOG0913|consen   23 SSKLTRIDEENWKELLT--GEWMIEFGAPWCPSCSDLIPHLENFATVSLD-LGVKVAKVDVTTNPGLSGRFLVTALPTIY   99 (248)
T ss_pred             cceeEEecccchhhhhc--hHHHHHhcCCCCccccchHHHHhccCCccCC-CceeEEEEEEEeccccceeeEEEecceEE
Confidence            45788899999999883  4689999999999999999999999876443 46999999999999999999999999999


Q ss_pred             EEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412          102 FFPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus       102 ~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      -...|  ...+|.|.|+..+++.|+..+--
T Consensus       100 HvkDG--eFrrysgaRdk~dfisf~~~r~w  127 (248)
T KOG0913|consen  100 HVKDG--EFRRYSGARDKNDFISFEEHREW  127 (248)
T ss_pred             Eeecc--ccccccCcccchhHHHHHHhhhh
Confidence            88877  67899999999999999976543

>smart00594 UAS UAS domain

Probab=99.19  E-value=3.4e-10  Score=82.43  Aligned_cols=94  Identities=14%  Similarity=0.193  Sum_probs=72.2

Q ss_pred             hhHHHHh----cCCCcEEEEEECCCChHHhhHhHHH---HHHHHHccCCCCeEEEEEeCc--cchhHHHHcCCCCCCeEE
Q 026412           31 DNFEKEV----GQDRGALVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDAD--KYKDLAEKYGVSGFPTLK  101 (239)
Q Consensus        31 ~~f~~~~----~~~k~vlV~F~a~wC~~C~~~~~~~---~~~a~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~Pt~~  101 (239)
                      .+|++++    .++|+++|+|+++||++|+.+....   .++.+.+.  .++++..+|++  ++.+++.+|++.++|++.
T Consensus        14 gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~--~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~   91 (122)
T smart00594       14 GSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIR--ENFIFWQVDVDTSEGQRVSQFYKLDSFPYVA   91 (122)
T ss_pred             CCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHH--cCEEEEEecCCChhHHHHHHhcCcCCCCEEE
Confidence            3455544    6788999999999999999997643   33444443  36888888876  567899999999999999


Q ss_pred             EEeCCC-----cCccccCCCCCHHHHHHHH
Q 026412          102 FFPKGN-----KDGEEYGGGRDLEDFVSFI  126 (239)
Q Consensus       102 ~~~~g~-----~~~~~~~g~~~~~~l~~~l  126 (239)
                      ++...+     ....++.|..++++++.++
T Consensus        92 ~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l  121 (122)
T smart00594       92 IVDPRTGQRVIEWVGVVEGEISPEELMTFL  121 (122)
T ss_pred             EEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence            996554     2356788999999999876

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=99.18  E-value=8.8e-11  Score=84.27  Aligned_cols=40  Identities=30%  Similarity=0.370  Sum_probs=33.1

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEE
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL   80 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~v   80 (239)
                      ++++++|.||++||++|+...|.++++++.+..  ++.++.+
T Consensus        20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~--~~~vi~v   59 (114)
T cd02967          20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD--WLDVVLA   59 (114)
T ss_pred             CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC--CcEEEEE
Confidence            478999999999999999999999999888753  3544444

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>PTZ00056 glutathione peroxidase; Provisional

Probab=99.16  E-value=1.6e-10  Score=91.24  Aligned_cols=44  Identities=11%  Similarity=0.238  Sum_probs=39.0

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD   83 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~   83 (239)
                      ++++++|+|||+||++|++..|.+.++.+++..+ ++.++.|+++
T Consensus        38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~-g~~vvgv~~~   81 (199)
T PTZ00056         38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL-GLEILAFPTS   81 (199)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC-ceEEEEecch
Confidence            5789999999999999999999999999999744 5888888763

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=99.16  E-value=2.3e-10  Score=85.86  Aligned_cols=90  Identities=23%  Similarity=0.376  Sum_probs=67.8

Q ss_pred             cChhhHHHHhcCCCcEEEEEECC-CChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc---------------------c
Q 026412           28 LTEDNFEKEVGQDRGALVEFYAP-WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------Y   85 (239)
Q Consensus        28 l~~~~f~~~~~~~k~vlV~F~a~-wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~---------------------~   85 (239)
                      .+...+.-.--++++++|.||++ |||+|+...|.+.++.+.+... ++.++.|..+.                     .
T Consensus        16 ~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~   94 (146)
T PF08534_consen   16 LDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK-GVDVVGVSSDDDPPVREFLKKYGINFPVLSDPD   94 (146)
T ss_dssp             TTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TCEEEEEEESSSHHHHHHHHHTTTTSEEEEETT
T ss_pred             CCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC-ceEEEEecccCCHHHHHHHHhhCCCceEEechH
Confidence            44443332224689999999999 9999999999999999887643 46666655432                     2


Q ss_pred             hhHHHHcCCC---------CCCeEEEEeCCCcCccccCCCCC
Q 026412           86 KDLAEKYGVS---------GFPTLKFFPKGNKDGEEYGGGRD  118 (239)
Q Consensus        86 ~~l~~~~~i~---------~~Pt~~~~~~g~~~~~~~~g~~~  118 (239)
                      ..+.+.|++.         ++|+++++.++|+....+.|..+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~  136 (146)
T PF08534_consen   95 GALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP  136 (146)
T ss_dssp             SHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred             HHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence            4788899988         99999999988887777666544

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=99.15  E-value=2.9e-10  Score=91.52  Aligned_cols=91  Identities=12%  Similarity=0.084  Sum_probs=69.8

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc--------c---hhHH-HHcCC------------
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--------Y---KDLA-EKYGV------------   94 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~--------~---~~l~-~~~~i------------   94 (239)
                      .+++++|+||++||++|....|.+.++.+++..+ ++.++.|++++        .   .+++ +++++            
T Consensus        98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~-Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G  176 (236)
T PLN02399         98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ-GFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNG  176 (236)
T ss_pred             CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC-CcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCc
Confidence            5689999999999999999999999999999754 58888888641        1   1222 23222            


Q ss_pred             ----------------------CCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412           95 ----------------------SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus        95 ----------------------~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                                            ...|+.++++++|+...+|.|..+++++.+.|++.+
T Consensus       177 ~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL  234 (236)
T PLN02399        177 PSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL  234 (236)
T ss_pred             chhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence                                  224778888777788888889888888888887765

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=1.3e-10  Score=89.75  Aligned_cols=84  Identities=21%  Similarity=0.532  Sum_probs=72.8

Q ss_pred             CCcEEc-ChhhHHHHh--cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCC----
Q 026412           23 DDVVVL-TEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS----   95 (239)
Q Consensus        23 ~~v~~l-~~~~f~~~~--~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~----   95 (239)
                      ..+.-+ +.+.+++.+  ++.+.++|.|++.|.+.|+++.|.+.+++.+|. .+.+.|++||+...++.+++|+|.    
T Consensus       124 e~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn-~~~lkFGkvDiGrfpd~a~kfris~s~~  202 (265)
T KOG0914|consen  124 ETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYN-NNLLKFGKVDIGRFPDVAAKFRISLSPG  202 (265)
T ss_pred             hheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhC-CCCCcccceeeccCcChHHheeeccCcc
Confidence            345556 677777777  556789999999999999999999999999996 457999999999999999999986    


Q ss_pred             --CCCeEEEEeCCC
Q 026412           96 --GFPTLKFFPKGN  107 (239)
Q Consensus        96 --~~Pt~~~~~~g~  107 (239)
                        ..||+++|.+|.
T Consensus       203 srQLPT~ilFq~gk  216 (265)
T KOG0914|consen  203 SRQLPTYILFQKGK  216 (265)
T ss_pred             cccCCeEEEEccch
Confidence              589999999884

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=99.15  E-value=1.4e-10  Score=78.38  Aligned_cols=70  Identities=27%  Similarity=0.563  Sum_probs=51.5

Q ss_pred             hHHHHhcCCCcEEEEEECCCChHHhhHhHHH---HHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEe
Q 026412           32 NFEKEVGQDRGALVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFP  104 (239)
Q Consensus        32 ~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~---~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~  104 (239)
                      .+.+...++++++|.|+++||++|+.+...+   .++.+.+.  .+++.+.||.++...... +...++|++++++
T Consensus         9 al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~--~~fv~v~vd~~~~~~~~~-~~~~~~P~~~~ld   81 (82)
T PF13899_consen    9 ALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALN--KNFVLVKVDVDDEDPNAQ-FDRQGYPTFFFLD   81 (82)
T ss_dssp             HHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHH--HCSEEEEEETTTHHHHHH-HHHCSSSEEEEEE
T ss_pred             HHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHH--CCEEEEEEEcCCCChhHH-hCCccCCEEEEeC
Confidence            3444457899999999999999999998776   34444332  379999999986554332 2226799999986

...

>PLN02412 probable glutathione peroxidase

Probab=99.09  E-value=6.2e-10  Score=85.53  Aligned_cols=92  Identities=11%  Similarity=0.095  Sum_probs=65.5

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc--------cchhH----HHHcCC------------
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD--------KYKDL----AEKYGV------------   94 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~--------~~~~l----~~~~~i------------   94 (239)
                      .+++++|+||++||++|++..|.+.++.+.++.. ++.++.|+++        ...++    ++++++            
T Consensus        28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~-g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g  106 (167)
T PLN02412         28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ-GFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNG  106 (167)
T ss_pred             CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC-CcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCC
Confidence            4689999999999999999999999999999754 5888888764        11111    233333            


Q ss_pred             ----------------------CCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412           95 ----------------------SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus        95 ----------------------~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                                            .+.|+.++++++|+....+.|..+.+++...|+..++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~  165 (167)
T PLN02412        107 KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG  165 (167)
T ss_pred             CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence                                  2245666666666666677777777777777766543

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=99.06  E-value=1.6e-09  Score=84.87  Aligned_cols=87  Identities=23%  Similarity=0.300  Sum_probs=61.7

Q ss_pred             cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEe-------------C-----ccchhHHHHcCCCCCCe
Q 026412           38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD-------------A-----DKYKDLAEKYGVSGFPT   99 (239)
Q Consensus        38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd-------------~-----~~~~~l~~~~~i~~~Pt   99 (239)
                      ..+++++|+||++||++|++..|.+.++.+...  .++.++..|             .     ....++++.|++.++|+
T Consensus        72 ~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~--~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~  149 (189)
T TIGR02661        72 APGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE--TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPY  149 (189)
T ss_pred             cCCCEEEEEEECCCChhHHHHHHHHHHHHHhcC--CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccce
Confidence            357899999999999999999999999887642  234444322             1     01346788999999999


Q ss_pred             EEEEeCCCcCccccCCC-CCHHHHHHHHHH
Q 026412          100 LKFFPKGNKDGEEYGGG-RDLEDFVSFINE  128 (239)
Q Consensus       100 ~~~~~~g~~~~~~~~g~-~~~~~l~~~l~~  128 (239)
                      .++++++|+..  +.|. .+.+.+.+.++.
T Consensus       150 ~~lID~~G~I~--~~g~~~~~~~le~ll~~  177 (189)
T TIGR02661       150 GVLLDQDGKIR--AKGLTNTREHLESLLEA  177 (189)
T ss_pred             EEEECCCCeEE--EccCCCCHHHHHHHHHH
Confidence            99887765543  3343 455666666654

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=99.01  E-value=2.7e-09  Score=80.78  Aligned_cols=89  Identities=15%  Similarity=0.185  Sum_probs=61.8

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc--------c---chhHHHH-cCCC-----------
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD--------K---YKDLAEK-YGVS-----------   95 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~--------~---~~~l~~~-~~i~-----------   95 (239)
                      ++++++|.||++||++|+...|.+.++.+.++.+ ++.++.|+++        .   ....+++ +++.           
T Consensus        21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~-~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~   99 (153)
T TIGR02540        21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPS-HFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILG   99 (153)
T ss_pred             CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC-CeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCC
Confidence            5788999999999999999999999999999744 5888888752        1   1223322 3321           


Q ss_pred             ---------------CCCe----EEEEeCCCcCccccCCCCCHHHHHHHHHH
Q 026412           96 ---------------GFPT----LKFFPKGNKDGEEYGGGRDLEDFVSFINE  128 (239)
Q Consensus        96 ---------------~~Pt----~~~~~~g~~~~~~~~g~~~~~~l~~~l~~  128 (239)
                                     ++|+    .++++++|+....+.|..+.+++...|.+
T Consensus       100 ~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~  151 (153)
T TIGR02540       100 SEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITA  151 (153)
T ss_pred             CCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHH
Confidence                           2554    55555555666666777777776666654

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.01  E-value=6.1e-09  Score=80.29  Aligned_cols=97  Identities=14%  Similarity=0.218  Sum_probs=74.3

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-----------------------------chhHH
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-----------------------------YKDLA   89 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-----------------------------~~~l~   89 (239)
                      ++++++++||++||+.|....+.+.++.++++. .++.++.|..+.                             ...++
T Consensus        24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~-~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~  102 (171)
T cd02969          24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGA-KGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVA  102 (171)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhh-CCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHH
Confidence            678999999999999999999999999999864 468888886642                             12567


Q ss_pred             HHcCCCCCCeEEEEeCCCcCcccc---------CCCCCHHHHHHHHHHhhCCCCCC
Q 026412           90 EKYGVSGFPTLKFFPKGNKDGEEY---------GGGRDLEDFVSFINEKCGTSRDG  136 (239)
Q Consensus        90 ~~~~i~~~Pt~~~~~~g~~~~~~~---------~g~~~~~~l~~~l~~~~~~~~~~  136 (239)
                      +.|++...|++++++++|+.....         .+..+..++.+.|+..+.....+
T Consensus       103 ~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~  158 (171)
T cd02969         103 KAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVP  158 (171)
T ss_pred             HHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCC
Confidence            789999999999998776543221         12356788999998887654443

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=98.98  E-value=2e-09  Score=81.38  Aligned_cols=43  Identities=16%  Similarity=0.212  Sum_probs=37.5

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD   83 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~   83 (239)
                      .+++++|+||++||+ |+...|.+.++.+.+... ++.++.|+++
T Consensus        21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~-~~~vv~v~~~   63 (152)
T cd00340          21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR-GLVVLGFPCN   63 (152)
T ss_pred             CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC-CEEEEEeccC
Confidence            478999999999999 999999999999999643 5888888653

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.96  E-value=6.7e-09  Score=73.61  Aligned_cols=73  Identities=37%  Similarity=0.742  Sum_probs=62.5

Q ss_pred             CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc-cchhHHHHcC--CCCCCeEEEEeCCCcCccccCC
Q 026412           40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-KYKDLAEKYG--VSGFPTLKFFPKGNKDGEEYGG  115 (239)
Q Consensus        40 ~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~-~~~~l~~~~~--i~~~Pt~~~~~~g~~~~~~~~g  115 (239)
                      ++++++.||++||++|+.+.|.+.++++.+..  .+.+..+|.. .++.+...|+  +..+|++.++.++.. ...+.+
T Consensus        32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~  107 (127)
T COG0526          32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG--DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE-VDRLVG  107 (127)
T ss_pred             CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC--CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch-hhhhhh
Confidence            78999999999999999999999999999863  5888899996 7889999999  899999998877744 444444

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=98.88  E-value=1.1e-08  Score=67.00  Aligned_cols=69  Identities=20%  Similarity=0.409  Sum_probs=52.4

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchh----HHHHcCCCCCCeEEEEeCCCcCccccCCCCCH
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD----LAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDL  119 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~  119 (239)
                      +..|+++||++|++..+.+.+        .++.+..+|+++++.    +.+++++.++|++++.  | +.   ..| .++
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~--------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~-~~---~~g-~~~   66 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTS--------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--H-KI---IVG-FDP   66 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHH--------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--C-EE---Eee-CCH
Confidence            568999999999999888764        147788888886543    5667999999999774  3 22   455 478


Q ss_pred             HHHHHHHH
Q 026412          120 EDFVSFIN  127 (239)
Q Consensus       120 ~~l~~~l~  127 (239)
                      +.+.+|++
T Consensus        67 ~~i~~~i~   74 (74)
T TIGR02196        67 EKLDQLLE   74 (74)
T ss_pred             HHHHHHhC
Confidence            88888863

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=98.84  E-value=4.4e-09  Score=78.17  Aligned_cols=72  Identities=24%  Similarity=0.437  Sum_probs=56.9

Q ss_pred             cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCC-CCeEEEEEeCccc-------------------------hhHHHH
Q 026412           38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKY-------------------------KDLAEK   91 (239)
Q Consensus        38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~-~~v~~~~vd~~~~-------------------------~~l~~~   91 (239)
                      -.+|.+.++|.|.||++|+.+.|.+.++.+....+ ..+.++-|+-|..                         .+++++
T Consensus        31 l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~k  110 (157)
T KOG2501|consen   31 LQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEK  110 (157)
T ss_pred             hCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHh
Confidence            35699999999999999999999999988887644 2355555554421                         378889


Q ss_pred             cCCCCCCeEEEEeCCCcC
Q 026412           92 YGVSGFPTLKFFPKGNKD  109 (239)
Q Consensus        92 ~~i~~~Pt~~~~~~g~~~  109 (239)
                      |+|.+.|++++..+.|+.
T Consensus       111 y~v~~iP~l~i~~~dG~~  128 (157)
T KOG2501|consen  111 YEVKGIPALVILKPDGTV  128 (157)
T ss_pred             cccCcCceeEEecCCCCE
Confidence            999999999998877654

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=98.83  E-value=6.6e-08  Score=72.95  Aligned_cols=85  Identities=19%  Similarity=0.440  Sum_probs=57.8

Q ss_pred             CCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHH-H--HHHHHHccCCCCeEEEEEeCccchhHHHHc------
Q 026412           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPT-Y--EKVAAAFTLEDDVVVANLDADKYKDLAEKY------   92 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~-~--~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~------   92 (239)
                      +-.+...+++.|+..-.++|+++|.++.+||++|+.|... |  .++++.+.  .+++-++||.++.+++...|      
T Consensus        19 ~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN--~~FI~VkvDree~Pdid~~y~~~~~~   96 (163)
T PF03190_consen   19 PVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLN--RNFIPVKVDREERPDIDKIYMNAVQA   96 (163)
T ss_dssp             SS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHH--HH-EEEEEETTT-HHHHHHHHHHHHH
T ss_pred             CCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHh--CCEEEEEeccccCccHHHHHHHHHHH
Confidence            3445667788999999999999999999999999999753 2  33455542  36888999999999998888      


Q ss_pred             --CCCCCCeEEEEeCCCc
Q 026412           93 --GVSGFPTLKFFPKGNK  108 (239)
Q Consensus        93 --~i~~~Pt~~~~~~g~~  108 (239)
                        |..|+|+.++..+.++
T Consensus        97 ~~~~gGwPl~vfltPdg~  114 (163)
T PF03190_consen   97 MSGSGGWPLTVFLTPDGK  114 (163)
T ss_dssp             HHS---SSEEEEE-TTS-
T ss_pred             hcCCCCCCceEEECCCCC
Confidence              7889999999987754

; PDB: 3IRA_A.

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=98.78  E-value=7.8e-08  Score=69.16  Aligned_cols=88  Identities=13%  Similarity=0.049  Sum_probs=68.8

Q ss_pred             cCCCcEEEEEECC----CChHHhhHh--HHHHHHHHHccCCCCeEEEEEeCc--cchhHHHHcCCCCCCeEEEEe---CC
Q 026412           38 GQDRGALVEFYAP----WCGHCKNLA--PTYEKVAAAFTLEDDVVVANLDAD--KYKDLAEKYGVSGFPTLKFFP---KG  106 (239)
Q Consensus        38 ~~~k~vlV~F~a~----wC~~C~~~~--~~~~~~a~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~Pt~~~~~---~g  106 (239)
                      ++.|.++|++|++    ||.+|+...  |.+.+.-+     .++.+...|++  +...++..+++.++|++.++.   +.
T Consensus        15 ~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln-----~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~   89 (116)
T cd02991          15 QELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN-----TRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNR   89 (116)
T ss_pred             hhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH-----cCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCc
Confidence            7789999999999    999998763  44444432     36888888886  456799999999999999883   22


Q ss_pred             CcCccccCCCCCHHHHHHHHHHhh
Q 026412          107 NKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus       107 ~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      .+...+..|..+++++...++...
T Consensus        90 ~~vv~~i~G~~~~~~ll~~L~~~~  113 (116)
T cd02991          90 MTIVGRLEGLIQPEDLINRLTFIM  113 (116)
T ss_pred             eEEEEEEeCCCCHHHHHHHHHHHH
Confidence            234668899999999999998754

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=98.77  E-value=2.8e-08  Score=73.75  Aligned_cols=85  Identities=18%  Similarity=0.190  Sum_probs=64.5

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc---------------------chhHHHHcCCCC
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------YKDLAEKYGVSG   96 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~---------------------~~~l~~~~~i~~   96 (239)
                      .+++++|.|| +.||+.|....|.+.++.+.+.. .++.++.|..+.                     ...+++.|++..
T Consensus        22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~  100 (140)
T cd03017          22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKA-LGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWG  100 (140)
T ss_pred             CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcc
Confidence            3789999999 58999999999999999988864 457777776542                     236777888887


Q ss_pred             C---------CeEEEEeCCCcCccccCCCCCHHHHHH
Q 026412           97 F---------PTLKFFPKGNKDGEEYGGGRDLEDFVS  124 (239)
Q Consensus        97 ~---------Pt~~~~~~g~~~~~~~~g~~~~~~l~~  124 (239)
                      .         |++++++++|+....+.|....+.+.+
T Consensus       101 ~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~  137 (140)
T cd03017         101 EKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEE  137 (140)
T ss_pred             ccccccCCcceeEEEECCCCEEEEEEecCCccchHHH
Confidence            7         888888876677777777655555443

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=98.74  E-value=4.7e-08  Score=61.39  Aligned_cols=60  Identities=42%  Similarity=0.843  Sum_probs=49.9

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHH---HcCCCCCCeEEEEeCC
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAE---KYGVSGFPTLKFFPKG  106 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~---~~~i~~~Pt~~~~~~g  106 (239)
                      ++.||++||++|+++.+.+.++ ...  ..++.+..++++.......   .+++.++|+++++.+|
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~   63 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL-ALL--NKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG   63 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH-Hhh--CCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence            5789999999999999999998 222  3579999999987766554   7899999999999776

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=98.73  E-value=7.1e-08  Score=63.90  Aligned_cols=69  Identities=20%  Similarity=0.391  Sum_probs=47.3

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHc-----CCCCCCeEEEEeCCCcCccccCCCCC
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKY-----GVSGFPTLKFFPKGNKDGEEYGGGRD  118 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~-----~i~~~Pt~~~~~~g~~~~~~~~g~~~  118 (239)
                      ++.||++||++|+++.+.+.+..        +.+-.+|+++++.....+     ++.++|++ ++.+| ..    ....+
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~~--------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g-~~----l~~~~   67 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKLG--------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADG-SF----LTNPS   67 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHcC--------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCC-eE----ecCCC
Confidence            67899999999999999886553        334568887666655553     88899997 46555 22    22345


Q ss_pred             HHHHHHHH
Q 026412          119 LEDFVSFI  126 (239)
Q Consensus       119 ~~~l~~~l  126 (239)
                      ..++.+.|
T Consensus        68 ~~~~~~~l   75 (77)
T TIGR02200        68 AAQVKAKL   75 (77)
T ss_pred             HHHHHHHh
Confidence            55665554

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>PTZ00256 glutathione peroxidase; Provisional

Probab=98.73  E-value=6.5e-08  Score=75.42  Aligned_cols=44  Identities=11%  Similarity=0.185  Sum_probs=35.9

Q ss_pred             CCCcE-EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc
Q 026412           39 QDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD   83 (239)
Q Consensus        39 ~~k~v-lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~   83 (239)
                      .++++ ++.+||+||++|++..|.+.++.++++.. ++.++.|+++
T Consensus        39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~-gv~vv~vs~~   83 (183)
T PTZ00256         39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ-GLEILAFPCN   83 (183)
T ss_pred             CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC-CcEEEEEecc
Confidence            46654 55669999999999999999999999743 5888888764

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=98.71  E-value=8e-08  Score=69.69  Aligned_cols=69  Identities=19%  Similarity=0.515  Sum_probs=57.0

Q ss_pred             CCCcEEEEEECC-CChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc---------------------chhHHHHcCCC-
Q 026412           39 QDRGALVEFYAP-WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------YKDLAEKYGVS-   95 (239)
Q Consensus        39 ~~k~vlV~F~a~-wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~---------------------~~~l~~~~~i~-   95 (239)
                      .+++++|.||+. ||++|+...+.+.++...++. .++.++.|..+.                     +..+++.|++. 
T Consensus        24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~-~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~  102 (124)
T PF00578_consen   24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKD-KGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIED  102 (124)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT-TTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEE
T ss_pred             CCCcEEEEEeCccCccccccchhHHHHHhhhhcc-ceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCcc
Confidence            569999999999 999999999999999999874 368888777653                     23677888888 


Q ss_pred             -----CCCeEEEEeCCCc
Q 026412           96 -----GFPTLKFFPKGNK  108 (239)
Q Consensus        96 -----~~Pt~~~~~~g~~  108 (239)
                           .+|++++++++++
T Consensus       103 ~~~~~~~p~~~lid~~g~  120 (124)
T PF00578_consen  103 EKDTLALPAVFLIDPDGK  120 (124)
T ss_dssp             TTTSEESEEEEEEETTSB
T ss_pred             ccCCceEeEEEEECCCCE
Confidence                 8889888887754

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=98.70  E-value=1.2e-07  Score=73.27  Aligned_cols=90  Identities=13%  Similarity=0.201  Sum_probs=66.3

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----------------------------chhHH
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA   89 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (239)
                      .+++++|.|| +.||++|....|.+.++++++.. .++.++.|.+|.                            ...++
T Consensus        28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~  106 (173)
T cd03015          28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKK-LNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKIS  106 (173)
T ss_pred             CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHH
Confidence            4689999999 89999999999999999999864 346666665442                            22566


Q ss_pred             HHcCCC------CCCeEEEEeCCCcCccccCC----CCCHHHHHHHHHHh
Q 026412           90 EKYGVS------GFPTLKFFPKGNKDGEEYGG----GRDLEDFVSFINEK  129 (239)
Q Consensus        90 ~~~~i~------~~Pt~~~~~~g~~~~~~~~g----~~~~~~l~~~l~~~  129 (239)
                      +.|++.      ..|+.+++++.|.....+.+    .++.+++.+.|+..
T Consensus       107 ~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~  156 (173)
T cd03015         107 RDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL  156 (173)
T ss_pred             HHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            677875      46788888877666555532    35677788888654

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>PF13728 TraF: F plasmid transfer operon protein

Probab=98.69  E-value=1.5e-07  Score=75.03  Aligned_cols=82  Identities=22%  Similarity=0.305  Sum_probs=66.5

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc-----------cchhHHHHcCCCCCCeEEEEeCCC
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-----------KYKDLAEKYGVSGFPTLKFFPKGN  107 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~-----------~~~~l~~~~~i~~~Pt~~~~~~g~  107 (239)
                      ..+.-+++||.+.|++|+.+.|.+..+++.++    +.+..|+.|           .+..++++++|..+|+++++..++
T Consensus       119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg----~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~  194 (215)
T PF13728_consen  119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG----FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNT  194 (215)
T ss_pred             hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC----CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCC
Confidence            47789999999999999999999999999984    666666665           346889999999999999998765


Q ss_pred             cCc-cccCCCCCHHHHHH
Q 026412          108 KDG-EEYGGGRDLEDFVS  124 (239)
Q Consensus       108 ~~~-~~~~g~~~~~~l~~  124 (239)
                      ... ..-.|..+.++|.+
T Consensus       195 ~~~~pv~~G~~s~~~L~~  212 (215)
T PF13728_consen  195 KKWYPVSQGFMSLDELED  212 (215)
T ss_pred             CeEEEEeeecCCHHHHHH
Confidence            333 33357888888765

>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=4e-07  Score=74.45  Aligned_cols=113  Identities=18%  Similarity=0.366  Sum_probs=88.6

Q ss_pred             CCCcEEcChhhHHHHhc-C--CCcEEEEEECC----CChHHhhHhHHHHHHHHHccCC------CCeEEEEEeCccchhH
Q 026412           22 ADDVVVLTEDNFEKEVG-Q--DRGALVEFYAP----WCGHCKNLAPTYEKVAAAFTLE------DDVVVANLDADKYKDL   88 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~-~--~k~vlV~F~a~----wC~~C~~~~~~~~~~a~~~~~~------~~v~~~~vd~~~~~~l   88 (239)
                      ..++..+++++|.+.+. .  +-.++|.|+|.    .|+-|++...++.-++..+..+      .++.|..||.++.++.
T Consensus        39 ~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~  118 (331)
T KOG2603|consen   39 ESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQV  118 (331)
T ss_pred             CCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHH
Confidence            56899999999999993 2  33488889874    4999999999999999876532      2688999999999999


Q ss_pred             HHHcCCCCCCeEEEEeCCC-c--CccccC---CCCCHHHHHHHHHHhhCCCC
Q 026412           89 AEKYGVSGFPTLKFFPKGN-K--DGEEYG---GGRDLEDFVSFINEKCGTSR  134 (239)
Q Consensus        89 ~~~~~i~~~Pt~~~~~~g~-~--~~~~~~---g~~~~~~l~~~l~~~~~~~~  134 (239)
                      .++++++..|++++|.+.. +  ....+.   -...+|++.+|+++++....
T Consensus       119 Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v  170 (331)
T KOG2603|consen  119 FQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNV  170 (331)
T ss_pred             HHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhhee
Confidence            9999999999999994332 1  222221   23459999999999887554

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=98.66  E-value=1.6e-07  Score=77.07  Aligned_cols=102  Identities=21%  Similarity=0.345  Sum_probs=74.1

Q ss_pred             CCcEEcC-hhhHHHHhcC---CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCC
Q 026412           23 DDVVVLT-EDNFEKEVGQ---DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP   98 (239)
Q Consensus        23 ~~v~~l~-~~~f~~~~~~---~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P   98 (239)
                      ..+.+++ ++.|-+.+..   +..|||+||-+.++.|..+...+..+|..|+   .+.|++|.....+ +..+|.+..+|
T Consensus       125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp---~vKFvkI~a~~~~-~~~~f~~~~LP  200 (265)
T PF02114_consen  125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYP---EVKFVKIRASKCP-ASENFPDKNLP  200 (265)
T ss_dssp             -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T---TSEEEEEEECGCC-TTTTS-TTC-S
T ss_pred             ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC---ceEEEEEehhccC-cccCCcccCCC
Confidence            4577775 5889888833   4579999999999999999999999999997   7999999887654 67899999999


Q ss_pred             eEEEEeCCCcCccccC------C-CCCHHHHHHHHHHh
Q 026412           99 TLKFFPKGNKDGEEYG------G-GRDLEDFVSFINEK  129 (239)
Q Consensus        99 t~~~~~~g~~~~~~~~------g-~~~~~~l~~~l~~~  129 (239)
                      |+++|++| .....+.      | ..+..++..||.+.
T Consensus       201 tllvYk~G-~l~~~~V~l~~~~g~df~~~dlE~~L~~~  237 (265)
T PF02114_consen  201 TLLVYKNG-DLIGNFVGLTDLLGDDFFTEDLEAFLIEY  237 (265)
T ss_dssp             EEEEEETT-EEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred             EEEEEECC-EEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence            99999987 3332222      2 36778888888764

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=98.64  E-value=2.5e-07  Score=71.07  Aligned_cols=42  Identities=19%  Similarity=0.417  Sum_probs=35.9

Q ss_pred             CCCcEEEEEECCC-ChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc
Q 026412           39 QDRGALVEFYAPW-CGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD   83 (239)
Q Consensus        39 ~~k~vlV~F~a~w-C~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~   83 (239)
                      .+++++|+||+.| |++|....|.+.++++.+.   ++.++.|.+|
T Consensus        43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~---~~~vv~vs~D   85 (167)
T PRK00522         43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD---NTVVLCISAD   85 (167)
T ss_pred             CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC---CcEEEEEeCC
Confidence            4789999999999 9999999999999998873   5777777655

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.63  E-value=2.2e-07  Score=69.57  Aligned_cols=45  Identities=11%  Similarity=0.172  Sum_probs=35.3

Q ss_pred             CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc
Q 026412           40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY   85 (239)
Q Consensus        40 ~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~   85 (239)
                      +..+++.|+++||++|+...|.+.++.+.+.. .++.++.|..+..
T Consensus        24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~-~~v~vv~V~~~~~   68 (149)
T cd02970          24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDA-LGVELVAVGPESP   68 (149)
T ss_pred             CCEEEEEECCCCChhHHHHHHHHHHHHHHHHh-cCeEEEEEeCCCH
Confidence            34455555699999999999999999999863 3588888887644

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=98.61  E-value=1.6e-06  Score=67.16  Aligned_cols=106  Identities=23%  Similarity=0.300  Sum_probs=88.0

Q ss_pred             cCCCcEEcChhhHHHHhcCCCc-EEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCC--CC
Q 026412           21 LADDVVVLTEDNFEKEVGQDRG-ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS--GF   97 (239)
Q Consensus        21 ~~~~v~~l~~~~f~~~~~~~k~-vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~--~~   97 (239)
                      .-+.+..++..++..+...+.+ +++.|+.........+...+..++..++  +.+.|+.+|++..+.+++.+|++  .+
T Consensus        75 ~~P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~--~~~~f~~~d~~~~~~~~~~~~i~~~~~  152 (184)
T PF13848_consen   75 SFPLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFK--GKINFVYVDADDFPRLLKYFGIDEDDL  152 (184)
T ss_dssp             SSTSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTT--TTSEEEEEETTTTHHHHHHTTTTTSSS
T ss_pred             ccccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcC--CeEEEEEeehHHhHHHHHHcCCCCccC
Confidence            3456899999999999987766 8888887788889999999999999986  46999999999889999999998  89


Q ss_pred             CeEEEEeCCC-cCccccCCCCCHHHHHHHHHH
Q 026412           98 PTLKFFPKGN-KDGEEYGGGRDLEDFVSFINE  128 (239)
Q Consensus        98 Pt~~~~~~g~-~~~~~~~g~~~~~~l~~~l~~  128 (239)
                      |+++++.... .....+.|..+.+.+.+|+++
T Consensus       153 P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d  184 (184)
T PF13848_consen  153 PALVIFDSNKGKYYYLPEGEITPESIEKFLND  184 (184)
T ss_dssp             SEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred             CEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence            9999998432 322334789999999999974

...

>TIGR03137 AhpC peroxiredoxin

Probab=98.60  E-value=3.1e-07  Score=71.84  Aligned_cols=89  Identities=17%  Similarity=0.117  Sum_probs=65.2

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-------------------------chhHHHHc
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------------------------YKDLAEKY   92 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~   92 (239)
                      .+++++|.|| +.||++|....|.+.++.+.+... ++.++.|.+|.                         ...+++.|
T Consensus        30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~-gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~  108 (187)
T TIGR03137        30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKL-GVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNF  108 (187)
T ss_pred             CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHh
Confidence            4689999999 999999999999999999888643 45566555432                         23677888


Q ss_pred             CCC------CCCeEEEEeCCCcCccccC----CCCCHHHHHHHHHH
Q 026412           93 GVS------GFPTLKFFPKGNKDGEEYG----GGRDLEDFVSFINE  128 (239)
Q Consensus        93 ~i~------~~Pt~~~~~~g~~~~~~~~----g~~~~~~l~~~l~~  128 (239)
                      |+.      ..|+.++++.+|.....+.    ..++.+++.+.|..
T Consensus       109 gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~  154 (187)
T TIGR03137       109 GVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA  154 (187)
T ss_pred             CCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence            886      3588888876666544332    23688888887753

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=98.58  E-value=3.4e-07  Score=60.79  Aligned_cols=73  Identities=23%  Similarity=0.541  Sum_probs=54.7

Q ss_pred             EEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCC-CCCHHHHH
Q 026412           45 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGG-GRDLEDFV  123 (239)
Q Consensus        45 V~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g-~~~~~~l~  123 (239)
                      |.+++++|++|..+...+.+++..+.    +.+--+|..+.+++ .+|||.++|++++  +|   ...+.| ..+.+++.
T Consensus         3 I~v~~~~C~~C~~~~~~~~~~~~~~~----i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng---~~~~~G~~p~~~el~   72 (76)
T PF13192_consen    3 IKVFSPGCPYCPELVQLLKEAAEELG----IEVEIIDIEDFEEI-EKYGVMSVPALVI--NG---KVVFVGRVPSKEELK   72 (76)
T ss_dssp             EEEECSSCTTHHHHHHHHHHHHHHTT----EEEEEEETTTHHHH-HHTT-SSSSEEEE--TT---EEEEESS--HHHHHH
T ss_pred             EEEeCCCCCCcHHHHHHHHHHHHhcC----CeEEEEEccCHHHH-HHcCCCCCCEEEE--CC---EEEEEecCCCHHHHH
Confidence            34478889999999999999998862    55555666666676 9999999999844  44   256788 78899999


Q ss_pred             HHHH
Q 026412          124 SFIN  127 (239)
Q Consensus       124 ~~l~  127 (239)
                      +||+
T Consensus        73 ~~l~   76 (76)
T PF13192_consen   73 ELLE   76 (76)
T ss_dssp             HHHH
T ss_pred             HHhC
Confidence            8874

...

>TIGR02180 GRX_euk Glutaredoxin

Probab=98.54  E-value=2.4e-07  Score=62.45  Aligned_cols=54  Identities=24%  Similarity=0.327  Sum_probs=41.7

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch-----hHHHHcCCCCCCeEE
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-----DLAEKYGVSGFPTLK  101 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~-----~l~~~~~i~~~Pt~~  101 (239)
                      ++.|+++|||+|+++.+.+.++.  ..  +.+.+..+|.+.+.     .+.+.+++.++|+++
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~--i~--~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~   59 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLN--VK--PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF   59 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcC--CC--CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE
Confidence            57899999999999999998876  21  34777788776443     366778999999973

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=98.54  E-value=2.7e-07  Score=67.59  Aligned_cols=81  Identities=28%  Similarity=0.501  Sum_probs=52.0

Q ss_pred             hhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHc---CCCCCCeEEEEeC
Q 026412           30 EDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKY---GVSGFPTLKFFPK  105 (239)
Q Consensus        30 ~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~---~i~~~Pt~~~~~~  105 (239)
                      ++....+. ...+.-++.|..+|||.|....|.+.++++..+   ++.+--+..|++.++.++|   |...+|+++++++
T Consensus        30 ~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p---~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~  106 (129)
T PF14595_consen   30 EEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP---NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDK  106 (129)
T ss_dssp             HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T---TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-T
T ss_pred             HHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC---CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcC
Confidence            33334333 345568888999999999999999999999854   6777777778788777766   5667999999987


Q ss_pred             CCcCcccc
Q 026412          106 GNKDGEEY  113 (239)
Q Consensus       106 g~~~~~~~  113 (239)
                      +++...++
T Consensus       107 ~~~~lg~w  114 (129)
T PF14595_consen  107 DGKELGRW  114 (129)
T ss_dssp             T--EEEEE
T ss_pred             CCCEeEEE
Confidence            65554444

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=98.53  E-value=6.3e-07  Score=67.76  Aligned_cols=80  Identities=23%  Similarity=0.240  Sum_probs=55.4

Q ss_pred             CCCcEEEEEECC-CChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc---------------------hhHHHHcCCCC
Q 026412           39 QDRGALVEFYAP-WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY---------------------KDLAEKYGVSG   96 (239)
Q Consensus        39 ~~k~vlV~F~a~-wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~---------------------~~l~~~~~i~~   96 (239)
                      ++++++|.||+. ||+.|....+.+.++.+.+.. .++.++.|..+..                     ..+++.|++..
T Consensus        29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~-~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~  107 (154)
T PRK09437         29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKK-AGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWG  107 (154)
T ss_pred             CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCc
Confidence            568999999975 688899999999999988864 3577887776532                     24566666643


Q ss_pred             C------------CeEEEEeCCCcCccccCCCCCH
Q 026412           97 F------------PTLKFFPKGNKDGEEYGGGRDL  119 (239)
Q Consensus        97 ~------------Pt~~~~~~g~~~~~~~~g~~~~  119 (239)
                      .            |+.++++++|+....|.|....
T Consensus       108 ~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~  142 (154)
T PRK09437        108 EKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTS  142 (154)
T ss_pred             ccccccccccCcceEEEEECCCCEEEEEEcCCCcc
Confidence            2            4556666555665666664333

>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=98.50  E-value=2.3e-07  Score=70.81  Aligned_cols=88  Identities=24%  Similarity=0.362  Sum_probs=76.6

Q ss_pred             CcEEcC-hhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEE
Q 026412           24 DVVVLT-EDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF  102 (239)
Q Consensus        24 ~v~~l~-~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~  102 (239)
                      ...++. ...|-+.+.++.-|++.||-|.-..|+-|...++.+|..+-   ...|++||+...|-++.+++|..+|++.+
T Consensus        67 ~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~---eTrFikvnae~~PFlv~kL~IkVLP~v~l  143 (211)
T KOG1672|consen   67 EYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHV---ETRFIKVNAEKAPFLVTKLNIKVLPTVAL  143 (211)
T ss_pred             eEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcc---cceEEEEecccCceeeeeeeeeEeeeEEE
Confidence            344444 78888888889999999999999999999999999999975   68899999999999999999999999999


Q ss_pred             EeCCCcCccccCC
Q 026412          103 FPKGNKDGEEYGG  115 (239)
Q Consensus       103 ~~~g~~~~~~~~g  115 (239)
                      |.+| .....+.|
T Consensus       144 ~k~g-~~~D~iVG  155 (211)
T KOG1672|consen  144 FKNG-KTVDYVVG  155 (211)
T ss_pred             EEcC-EEEEEEee
Confidence            9998 44455555

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=98.48  E-value=3.6e-07  Score=67.93  Aligned_cols=45  Identities=20%  Similarity=0.335  Sum_probs=38.6

Q ss_pred             CCCcEEEEEECCCChH-HhhHhHHHHHHHHHccCCC--CeEEEEEeCc
Q 026412           39 QDRGALVEFYAPWCGH-CKNLAPTYEKVAAAFTLED--DVVVANLDAD   83 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~-C~~~~~~~~~~a~~~~~~~--~v~~~~vd~~   83 (239)
                      .+++++|.||++||++ |....+.+.++.+.+..++  ++.++.|..+
T Consensus        21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d   68 (142)
T cd02968          21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD   68 (142)
T ss_pred             CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence            5789999999999998 9999999999999987542  5888887764

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=98.47  E-value=1e-06  Score=66.03  Aligned_cols=43  Identities=12%  Similarity=0.243  Sum_probs=35.1

Q ss_pred             CCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc
Q 026412           40 DRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD   83 (239)
Q Consensus        40 ~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~   83 (239)
                      .++++|.|| ++||+.|....|.+.++.+++.. .++.++.|..+
T Consensus        28 ~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~-~~v~vi~vs~d   71 (149)
T cd03018          28 RKPVVLVFFPLAFTPVCTKELCALRDSLELFEA-AGAEVLGISVD   71 (149)
T ss_pred             CCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHh-CCCEEEEecCC
Confidence            378888887 99999999999999999999864 35777777654

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>PRK13190 putative peroxiredoxin; Provisional

Probab=98.46  E-value=1.1e-06  Score=69.67  Aligned_cols=91  Identities=14%  Similarity=0.186  Sum_probs=66.9

Q ss_pred             CCCcEEE-EEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc---------------------------cchhHHH
Q 026412           39 QDRGALV-EFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD---------------------------KYKDLAE   90 (239)
Q Consensus        39 ~~k~vlV-~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~---------------------------~~~~l~~   90 (239)
                      .++.+++ .||+.||+.|....+.+.+..+++... ++.++.|.+|                           ...++++
T Consensus        26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~-~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~  104 (202)
T PRK13190         26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL-GVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAR  104 (202)
T ss_pred             CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHH
Confidence            4566555 689999999999999999999888643 4556655443                           2246778


Q ss_pred             HcCCC------CCCeEEEEeCCCcCcccc----CCCCCHHHHHHHHHHhh
Q 026412           91 KYGVS------GFPTLKFFPKGNKDGEEY----GGGRDLEDFVSFINEKC  130 (239)
Q Consensus        91 ~~~i~------~~Pt~~~~~~g~~~~~~~----~g~~~~~~l~~~l~~~~  130 (239)
                      .||+.      .+|+.++++++|+.....    .++++.+++...|+...
T Consensus       105 ~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~  154 (202)
T PRK13190        105 EYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ  154 (202)
T ss_pred             HcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence            88884      489999998776543322    45689999999997654

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=98.45  E-value=1e-06  Score=65.68  Aligned_cols=42  Identities=19%  Similarity=0.368  Sum_probs=36.0

Q ss_pred             CCCcEEEEEECCC-ChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc
Q 026412           39 QDRGALVEFYAPW-CGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD   83 (239)
Q Consensus        39 ~~k~vlV~F~a~w-C~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~   83 (239)
                      .++++++.||+.| |++|+...|.+.++.+++.   ++.++.|+.+
T Consensus        25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~---~~~vi~Is~d   67 (143)
T cd03014          25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD---NTVVLTISAD   67 (143)
T ss_pred             CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC---CCEEEEEECC
Confidence            4689999999998 6999999999999999874   5777777765

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=98.45  E-value=2.3e-06  Score=69.66  Aligned_cols=88  Identities=18%  Similarity=0.190  Sum_probs=69.3

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc-----------hhHHHHcCCCCCCeEEEEeCCC
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-----------KDLAEKYGVSGFPTLKFFPKGN  107 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~-----------~~l~~~~~i~~~Pt~~~~~~g~  107 (239)
                      ..+.-+++||...|++|+++.|.+..+++.++    +.+..|++|..           ...++++|+..+|++++...+.
T Consensus       149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg----i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t  224 (256)
T TIGR02739       149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG----ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKS  224 (256)
T ss_pred             HhceeEEEEECCCCchhHHHHHHHHHHHHHhC----CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCC
Confidence            35689999999999999999999999999984    66666666532           4588999999999999997764


Q ss_pred             cCcc-ccCCCCCHHHHHHHHHHhh
Q 026412          108 KDGE-EYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus       108 ~~~~-~~~g~~~~~~l~~~l~~~~  130 (239)
                      +... .-.|..+.++|.+=+...+
T Consensus       225 ~~~~pv~~G~iS~deL~~Ri~~v~  248 (256)
T TIGR02739       225 QKMSPLAYGFISQDELKERILNVL  248 (256)
T ss_pred             CcEEEEeeccCCHHHHHHHHHHHH
Confidence            4333 2358889999887665543

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=98.44  E-value=2.2e-06  Score=66.95  Aligned_cols=90  Identities=18%  Similarity=0.166  Sum_probs=67.7

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-------------------------chhHHHHc
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------------------------YKDLAEKY   92 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~   92 (239)
                      .++++++.|| +.||+.|....+.+.+..+++... ++.++.|..|.                         +..+++.|
T Consensus        30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~-g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~y  108 (187)
T PRK10382         30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL-GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNF  108 (187)
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHc
Confidence            4678999999 999999999999999999998643 46666665442                         34788899


Q ss_pred             CC----CCC--CeEEEEeCCCcCcccc----CCCCCHHHHHHHHHHh
Q 026412           93 GV----SGF--PTLKFFPKGNKDGEEY----GGGRDLEDFVSFINEK  129 (239)
Q Consensus        93 ~i----~~~--Pt~~~~~~g~~~~~~~----~g~~~~~~l~~~l~~~  129 (239)
                      |+    .+.  |+.++++++|+....+    ...++.+++.+.|...
T Consensus       109 gv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al  155 (187)
T PRK10382        109 DNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA  155 (187)
T ss_pred             CCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence            98    356  9999998776643332    2347899999988654

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=98.43  E-value=1e-06  Score=71.22  Aligned_cols=81  Identities=23%  Similarity=0.444  Sum_probs=59.8

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEE--------------------------------------
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL--------------------------------------   80 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~v--------------------------------------   80 (239)
                      +++..++.|+.|.||+|+++++.+.++.+.     ++.+..+                                      
T Consensus       106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~-----~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~  180 (232)
T PRK10877        106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL-----GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVS  180 (232)
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHhcC-----CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCC
Confidence            356789999999999999999998876431     1222111                                      


Q ss_pred             ------eCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHh
Q 026412           81 ------DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus        81 ------d~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~  129 (239)
                            +++++.++++++||+++|+++ +.+|    ....|..+++.|.++|++.
T Consensus       181 ~~~c~~~v~~~~~la~~lgi~gTPtiv-~~~G----~~~~G~~~~~~L~~~l~~~  230 (232)
T PRK10877        181 PASCDVDIADHYALGVQFGVQGTPAIV-LSNG----TLVPGYQGPKEMKAFLDEH  230 (232)
T ss_pred             cccccchHHHhHHHHHHcCCccccEEE-EcCC----eEeeCCCCHHHHHHHHHHc
Confidence                  112345889999999999987 6565    2458999999999999753

>PRK15000 peroxidase; Provisional

Probab=98.40  E-value=2e-06  Score=67.99  Aligned_cols=90  Identities=12%  Similarity=0.303  Sum_probs=68.2

Q ss_pred             CCCcEEEEEEC-CCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----------------------------chhHH
Q 026412           39 QDRGALVEFYA-PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA   89 (239)
Q Consensus        39 ~~k~vlV~F~a-~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (239)
                      +++++++.||+ .||+.|....+.+.+..+++... ++.++.|.+|.                            ...++
T Consensus        33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~-g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia  111 (200)
T PRK15000         33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR-GVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQ  111 (200)
T ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHH
Confidence            57899999999 59999999999999999998743 46677666552                            22567


Q ss_pred             HHcCCC------CCCeEEEEeCCCcCccccCC----CCCHHHHHHHHHHh
Q 026412           90 EKYGVS------GFPTLKFFPKGNKDGEEYGG----GRDLEDFVSFINEK  129 (239)
Q Consensus        90 ~~~~i~------~~Pt~~~~~~g~~~~~~~~g----~~~~~~l~~~l~~~  129 (239)
                      +.||+.      .+|+.+++++.|.....+.|    .++.+++.+.++..
T Consensus       112 ~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al  161 (200)
T PRK15000        112 KAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL  161 (200)
T ss_pred             HHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            778887      68999999877665443333    47899999888653

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=98.36  E-value=1.7e-06  Score=64.05  Aligned_cols=44  Identities=16%  Similarity=0.350  Sum_probs=37.0

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD   83 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~   83 (239)
                      .+++++|.|| +.||+.|....|.+.++.+++. ..++.++.|..+
T Consensus        21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~-~~~~~~i~is~d   65 (140)
T cd02971          21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFA-KGGAEVLGVSVD   65 (140)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHH-HCCCEEEEEeCC
Confidence            6789999999 7899999999999999999985 335777777655

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=98.34  E-value=2.7e-06  Score=61.09  Aligned_cols=74  Identities=23%  Similarity=0.448  Sum_probs=49.1

Q ss_pred             hhHHHHh----cCCCcEEEEEEC-------CCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-------chhHHH--
Q 026412           31 DNFEKEV----GQDRGALVEFYA-------PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------YKDLAE--   90 (239)
Q Consensus        31 ~~f~~~~----~~~k~vlV~F~a-------~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-------~~~l~~--   90 (239)
                      ++|.+.+    .++++++|.|++       +|||.|....|.+++.-...+.  +..++.|.+.+       +..+.+  
T Consensus         6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~--~~~lv~v~VG~r~~Wkdp~n~fR~~p   83 (119)
T PF06110_consen    6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE--NARLVYVEVGDRPEWKDPNNPFRTDP   83 (119)
T ss_dssp             HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST--TEEEEEEE---HHHHC-TTSHHHH--
T ss_pred             HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC--CceEEEEEcCCHHHhCCCCCCceEcc
Confidence            4555665    456889999986       6999999999999988877543  56666665531       123444  


Q ss_pred             HcCCCCCCeEEEEeCC
Q 026412           91 KYGVSGFPTLKFFPKG  106 (239)
Q Consensus        91 ~~~i~~~Pt~~~~~~g  106 (239)
                      ++++.++||++-+..+
T Consensus        84 ~~~l~~IPTLi~~~~~   99 (119)
T PF06110_consen   84 DLKLKGIPTLIRWETG   99 (119)
T ss_dssp             CC---SSSEEEECTSS
T ss_pred             eeeeeecceEEEECCC
Confidence            5899999999998655

; PDB: 1V9W_A 1WOU_A.

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.34  E-value=2.9e-06  Score=59.75  Aligned_cols=75  Identities=19%  Similarity=0.430  Sum_probs=56.2

Q ss_pred             hhhHHHHh---cCCCcEEEEEEC--------CCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-------chhHHHH
Q 026412           30 EDNFEKEV---GQDRGALVEFYA--------PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------YKDLAEK   91 (239)
Q Consensus        30 ~~~f~~~~---~~~k~vlV~F~a--------~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-------~~~l~~~   91 (239)
                      .+.|++.+   .+++.++|.|++        +|||.|.+..|.+.+.-+..+  .++.|+.|++-+       +..+...
T Consensus        12 ~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap--~~~~~v~v~VG~rp~Wk~p~n~FR~d   89 (128)
T KOG3425|consen   12 YESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP--EDVHFVHVYVGNRPYWKDPANPFRKD   89 (128)
T ss_pred             HHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC--CceEEEEEEecCCCcccCCCCccccC
Confidence            35666666   455669999986        899999999999998888654  467788887642       2345666


Q ss_pred             cCC-CCCCeEEEEeCC
Q 026412           92 YGV-SGFPTLKFFPKG  106 (239)
Q Consensus        92 ~~i-~~~Pt~~~~~~g  106 (239)
                      .++ .++||++=+.++
T Consensus        90 ~~~lt~vPTLlrw~~~  105 (128)
T KOG3425|consen   90 PGILTAVPTLLRWKRQ  105 (128)
T ss_pred             CCceeecceeeEEcCc
Confidence            677 889999888643

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=98.29  E-value=3.6e-06  Score=54.68  Aligned_cols=67  Identities=16%  Similarity=0.329  Sum_probs=44.7

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHc----CCCCCCeEEEEeCCCcCccccCCCCCH
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKY----GVSGFPTLKFFPKGNKDGEEYGGGRDL  119 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~----~i~~~Pt~~~~~~g~~~~~~~~g~~~~  119 (239)
                      ++.|+++||++|.++.+.+.+.        ++.+..+|++.++...+.+    ++.++|++++  +|    ....| .+.
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~~--------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~----~~i~g-~~~   66 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDER--------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GD----EHLSG-FRP   66 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHHC--------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CC----EEEec-CCH
Confidence            5789999999999988777652        3556677777655444443    6789999865  33    23333 456


Q ss_pred             HHHHHH
Q 026412          120 EDFVSF  125 (239)
Q Consensus       120 ~~l~~~  125 (239)
                      +.+.++
T Consensus        67 ~~l~~~   72 (73)
T cd02976          67 DKLRAL   72 (73)
T ss_pred             HHHHhh
Confidence            666554

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=98.28  E-value=8.9e-06  Score=65.86  Aligned_cols=86  Identities=17%  Similarity=0.155  Sum_probs=66.2

Q ss_pred             CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-----------chhHHHHcCCCCCCeEEEEeCCCc
Q 026412           40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-----------YKDLAEKYGVSGFPTLKFFPKGNK  108 (239)
Q Consensus        40 ~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-----------~~~l~~~~~i~~~Pt~~~~~~g~~  108 (239)
                      .+.-+++||.+.|++|.++.|.+..+++.++    +.+..|.+|.           +...+++++|..+|+++++..+..
T Consensus       143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg----~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~  218 (248)
T PRK13703        143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYG----LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSG  218 (248)
T ss_pred             hcceEEEEECCCCchhHHHHHHHHHHHHHhC----CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCC
Confidence            5689999999999999999999999999985    5555554442           234678999999999999987754


Q ss_pred             Cccc-cCCCCCHHHHHHHHHHh
Q 026412          109 DGEE-YGGGRDLEDFVSFINEK  129 (239)
Q Consensus       109 ~~~~-~~g~~~~~~l~~~l~~~  129 (239)
                      ...+ -.|..+.++|.+=+...
T Consensus       219 ~~~pv~~G~iS~deL~~Ri~~v  240 (248)
T PRK13703        219 SVRPLSYGFITQDDLAKRFLNV  240 (248)
T ss_pred             cEEEEeeccCCHHHHHHHHHHH
Confidence            3332 35888999987666544

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.28  E-value=2e-05  Score=54.51  Aligned_cols=90  Identities=27%  Similarity=0.360  Sum_probs=70.7

Q ss_pred             hhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcC
Q 026412           30 EDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKD  109 (239)
Q Consensus        30 ~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~  109 (239)
                      .+..+..+...++++|-|+.++|+   .....|.++|..+.  +.+.|+.+.   +.++++++++. -|++.+|++....
T Consensus         7 ~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r--~~~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~~~~   77 (97)
T cd02981           7 KEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLR--DDYGFGHTS---DKEVAKKLKVK-PGSVVLFKPFEEE   77 (97)
T ss_pred             HHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcc--cCCeEEEEC---hHHHHHHcCCC-CCceEEeCCcccC
Confidence            344666678889999999999997   46678899998875  357777665   45778888775 5899999876556


Q ss_pred             ccccCCCCCHHHHHHHHHH
Q 026412          110 GEEYGGGRDLEDFVSFINE  128 (239)
Q Consensus       110 ~~~~~g~~~~~~l~~~l~~  128 (239)
                      +..|.|..+.++|.+||..
T Consensus        78 ~~~y~g~~~~~~l~~fi~~   96 (97)
T cd02981          78 PVEYDGEFTEESLVEFIKD   96 (97)
T ss_pred             CccCCCCCCHHHHHHHHHh
Confidence            7789999999999999864

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=98.28  E-value=1.9e-05  Score=56.36  Aligned_cols=102  Identities=15%  Similarity=0.062  Sum_probs=80.0

Q ss_pred             cEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHH---ccCCCCeEEEEEeCccchhHHHHcCCCC--CCe
Q 026412           25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAA---FTLEDDVVVANLDADKYKDLAEKYGVSG--FPT   99 (239)
Q Consensus        25 v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~---~~~~~~v~~~~vd~~~~~~l~~~~~i~~--~Pt   99 (239)
                      |.+++.+++.....++.+..+.|+  .-..-....+.+.++|+.   ++  +.+.|+.+|.+......+.||++.  +|.
T Consensus         1 ~~e~t~e~~~~~~~~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~k--gki~Fv~~d~~~~~~~~~~fgl~~~~~P~   76 (111)
T cd03072           1 VREITFENAEELTEEGLPFLILFH--DKDDLESLKEFKQAVARQLISEK--GAINFLTADGDKFRHPLLHLGKTPADLPV   76 (111)
T ss_pred             CcccccccHHHHhcCCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcC--ceEEEEEEechHhhhHHHHcCCCHhHCCE
Confidence            457788999888877777777777  222346778899999999   76  569999999998777899999996  999


Q ss_pred             EEEEeCCCcCccc-cCCCCCHHHHHHHHHHhh
Q 026412          100 LKFFPKGNKDGEE-YGGGRDLEDFVSFINEKC  130 (239)
Q Consensus       100 ~~~~~~g~~~~~~-~~g~~~~~~l~~~l~~~~  130 (239)
                      +.+...++..... +.+..+++.+.+|+++..
T Consensus        77 i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~  108 (111)
T cd03072          77 IAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLH  108 (111)
T ss_pred             EEEEcchhcCcCCCCccccCHHHHHHHHHHHh
Confidence            9988765322233 567899999999998865

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.26  E-value=1e-05  Score=73.68  Aligned_cols=95  Identities=19%  Similarity=0.352  Sum_probs=75.7

Q ss_pred             CcEEcChhhHHHHhcCCCcE-EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEE
Q 026412           24 DVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF  102 (239)
Q Consensus        24 ~v~~l~~~~f~~~~~~~k~v-lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~  102 (239)
                      .-..++.+..+.+-.=++++ +-.|.++||++|.+....+.+++...+   ++..-.+|+...++++++|+|.++|++++
T Consensus       459 ~~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~---~i~~~~i~~~~~~~~~~~~~v~~vP~~~i  535 (555)
T TIGR03143       459 PGQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP---NVEAEMIDVSHFPDLKDEYGIMSVPAIVV  535 (555)
T ss_pred             CCCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC---CceEEEEECcccHHHHHhCCceecCEEEE
Confidence            33566777777665445665 445689999999999999999998864   78888999999999999999999999855


Q ss_pred             EeCCCcCccccCCCCCHHHHHHHH
Q 026412          103 FPKGNKDGEEYGGGRDLEDFVSFI  126 (239)
Q Consensus       103 ~~~g~~~~~~~~g~~~~~~l~~~l  126 (239)
                        +| +  ..+.|..+.+++.+||
T Consensus       536 --~~-~--~~~~G~~~~~~~~~~~  554 (555)
T TIGR03143       536 --DD-Q--QVYFGKKTIEEMLELI  554 (555)
T ss_pred             --CC-E--EEEeeCCCHHHHHHhh
Confidence              33 2  3467888999999886

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.25  E-value=1.3e-05  Score=72.45  Aligned_cols=100  Identities=16%  Similarity=0.279  Sum_probs=79.9

Q ss_pred             CcEEcChhhHHHHhcCCCc-EEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEE
Q 026412           24 DVVVLTEDNFEKEVGQDRG-ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF  102 (239)
Q Consensus        24 ~v~~l~~~~f~~~~~~~k~-vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~  102 (239)
                      .-..++++..+.+-.=+++ -+-.|++++||+|......+.+++...+   ++..-.+|...+++++++|++.++|++++
T Consensus        99 ~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~---~i~~~~id~~~~~~~~~~~~v~~VP~~~i  175 (517)
T PRK15317         99 HPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP---NITHTMIDGALFQDEVEARNIMAVPTVFL  175 (517)
T ss_pred             CCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC---CceEEEEEchhCHhHHHhcCCcccCEEEE
Confidence            3455677766666533344 5888999999999999999999998754   78898999999999999999999999854


Q ss_pred             EeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412          103 FPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus       103 ~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                        +| +  ..+.|..+.+++.+.+.+..+
T Consensus       176 --~~-~--~~~~g~~~~~~~~~~~~~~~~  199 (517)
T PRK15317        176 --NG-E--EFGQGRMTLEEILAKLDTGAA  199 (517)
T ss_pred             --CC-c--EEEecCCCHHHHHHHHhcccc
Confidence              44 2  347799999999999887554

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=98.25  E-value=9.3e-06  Score=64.56  Aligned_cols=33  Identities=21%  Similarity=0.601  Sum_probs=27.6

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHH---HHHHHHccC
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTY---EKVAAAFTL   71 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~---~~~a~~~~~   71 (239)
                      .+++.+|.|+...||||..++|.+   ..+.+.++.
T Consensus        36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~   71 (207)
T PRK10954         36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE   71 (207)
T ss_pred             CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC
Confidence            357889999999999999999876   777777753

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=98.24  E-value=7.9e-06  Score=64.75  Aligned_cols=87  Identities=18%  Similarity=0.303  Sum_probs=63.0

Q ss_pred             cEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc---------------------------chhHHHHcCC
Q 026412           42 GALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------------YKDLAEKYGV   94 (239)
Q Consensus        42 ~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~---------------------------~~~l~~~~~i   94 (239)
                      .+++.|+++||+.|....+.+.++.+++... ++.++.|.+|.                           ...+++.||+
T Consensus        28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~-gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~  106 (203)
T cd03016          28 GILFSHPADFTPVCTTELGAFAKLAPEFKKR-NVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGM  106 (203)
T ss_pred             EEEEEecCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCC
Confidence            4566889999999999999999999998643 47777766552                           2367788887


Q ss_pred             C----C----CCeEEEEeCCCcCccccCC----CCCHHHHHHHHHHh
Q 026412           95 S----G----FPTLKFFPKGNKDGEEYGG----GRDLEDFVSFINEK  129 (239)
Q Consensus        95 ~----~----~Pt~~~~~~g~~~~~~~~g----~~~~~~l~~~l~~~  129 (239)
                      .    +    .|+.++++++|+....+.+    .++.+++.+.|...
T Consensus       107 ~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l  153 (203)
T cd03016         107 IDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL  153 (203)
T ss_pred             ccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            5    2    3457788766665433333    57889999888764

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=98.24  E-value=4.3e-06  Score=56.63  Aligned_cols=77  Identities=26%  Similarity=0.348  Sum_probs=55.5

Q ss_pred             EEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc----hhHHHHcC--CCCCCeEEEEeCCCcCccccCCC
Q 026412           43 ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY----KDLAEKYG--VSGFPTLKFFPKGNKDGEEYGGG  116 (239)
Q Consensus        43 vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~----~~l~~~~~--i~~~Pt~~~~~~g~~~~~~~~g~  116 (239)
                      -++.|+.+||++|++....++++...+.   ++.+..+|++.+    .++....+  +..+|+++  .+| +    +.| 
T Consensus         2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~---~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g-~----~ig-   70 (85)
T PRK11200          2 FVVIFGRPGCPYCVRAKELAEKLSEERD---DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQ-K----HIG-   70 (85)
T ss_pred             EEEEEeCCCChhHHHHHHHHHhhccccc---CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECC-E----EEc-
Confidence            3688999999999999999999987642   677888888753    34555555  47899974  344 2    122 


Q ss_pred             CCHHHHHHHHHHhhC
Q 026412          117 RDLEDFVSFINEKCG  131 (239)
Q Consensus       117 ~~~~~l~~~l~~~~~  131 (239)
                       ..+++.++++..++
T Consensus        71 -g~~~~~~~~~~~~~   84 (85)
T PRK11200         71 -GCTDFEAYVKENLG   84 (85)
T ss_pred             -CHHHHHHHHHHhcc
Confidence             45788888876653

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=98.21  E-value=6.3e-06  Score=64.97  Aligned_cols=77  Identities=21%  Similarity=0.382  Sum_probs=54.7

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEE----------------------------------------
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA----------------------------------------   78 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~----------------------------------------   78 (239)
                      +.+..++.|+.+.||+|+++++.+.+.    .  +++.+.                                        
T Consensus        76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~~----~--~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~  149 (197)
T cd03020          76 NGKRVVYVFTDPDCPYCRKLEKELKPN----A--DGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPP  149 (197)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhhc----c--CceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCC
Confidence            357899999999999999999888751    1  112221                                        


Q ss_pred             -----EEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHH
Q 026412           79 -----NLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI  126 (239)
Q Consensus        79 -----~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l  126 (239)
                           ..+++.+..+++++||+++|+++ +.+|    ..+.|..+.+++.++|
T Consensus       150 ~~~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G----~~~~G~~~~~~l~~~L  197 (197)
T cd03020         150 PAASCDNPVAANLALGRQLGVNGTPTIV-LADG----RVVPGAPPAAQLEALL  197 (197)
T ss_pred             CccccCchHHHHHHHHHHcCCCcccEEE-ECCC----eEecCCCCHHHHHhhC
Confidence                 11222345788999999999996 6665    2357888888887764

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=1.9e-06  Score=67.51  Aligned_cols=88  Identities=17%  Similarity=0.362  Sum_probs=71.8

Q ss_pred             hhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcC
Q 026412           30 EDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKD  109 (239)
Q Consensus        30 ~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~  109 (239)
                      ...|  ...+.+.+++.||++||..|+++...+..+++..   .++.+++++.+..++++..+.+...|++.++..| ..
T Consensus         9 ~~~f--~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~---~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~-~~   82 (227)
T KOG0911|consen    9 QEQF--LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF---KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLG-EK   82 (227)
T ss_pred             HHHH--HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhh---hhheeeeehhhhhhHHHHHHHHhcCceeeeeecc-hh
Confidence            3455  3357889999999999999999999999999887   4799999999999999999999999999998776 44


Q ss_pred             ccccCCCCCHHHHH
Q 026412          110 GEEYGGGRDLEDFV  123 (239)
Q Consensus       110 ~~~~~g~~~~~~l~  123 (239)
                      ..+..|...+....
T Consensus        83 v~~l~~~~~~~~~~   96 (227)
T KOG0911|consen   83 VDRLSGADPPFLVS   96 (227)
T ss_pred             hhhhhccCcHHHHH
Confidence            55556654443333

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=98.18  E-value=3.5e-05  Score=58.42  Aligned_cols=84  Identities=23%  Similarity=0.372  Sum_probs=62.7

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc--c-------------------------------
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--Y-------------------------------   85 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~--~-------------------------------   85 (239)
                      ..+++|+.|+.+.||||+++.+.+.++.+.+-..+.+.+...+...  .                               
T Consensus        11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (162)
T PF13462_consen   11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE   90 (162)
T ss_dssp             TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred             CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence            4577899999999999999999999999988545677777665421  0                               


Q ss_pred             -----------------------------------hhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHH
Q 026412           86 -----------------------------------KDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE  128 (239)
Q Consensus        86 -----------------------------------~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~  128 (239)
                                                         ...+.+++|.++||+++  +| +   .+.|..+.+++.++|++
T Consensus        91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG-~---~~~~~~~~~~l~~~Id~  162 (162)
T PF13462_consen   91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NG-K---YVVGPYTIEELKELIDK  162 (162)
T ss_dssp             STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TT-C---EEETTTSHHHHHHHHHH
T ss_pred             ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CC-E---EeCCCCCHHHHHHHHcC
Confidence                                               04556789999999876  55 2   25788899999998864

...

>PRK13189 peroxiredoxin; Provisional

Probab=98.16  E-value=1.3e-05  Score=64.30  Aligned_cols=90  Identities=13%  Similarity=0.203  Sum_probs=64.9

Q ss_pred             CCCc-EEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc---------------------------chhHHH
Q 026412           39 QDRG-ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------------YKDLAE   90 (239)
Q Consensus        39 ~~k~-vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~---------------------------~~~l~~   90 (239)
                      .+++ +++.|++.||+.|....+.+.+.++++... ++.++.|.+|.                           ...+++
T Consensus        34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~-~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~  112 (222)
T PRK13189         34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL-NTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAK  112 (222)
T ss_pred             CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHH
Confidence            4564 455778999999999999999999998643 46666665442                           236778


Q ss_pred             HcCCC-------CCCeEEEEeCCCcCcccc----CCCCCHHHHHHHHHHh
Q 026412           91 KYGVS-------GFPTLKFFPKGNKDGEEY----GGGRDLEDFVSFINEK  129 (239)
Q Consensus        91 ~~~i~-------~~Pt~~~~~~g~~~~~~~----~g~~~~~~l~~~l~~~  129 (239)
                      .||+.       .+|+.++++++|......    ...++.+++...|+..
T Consensus       113 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al  162 (222)
T PRK13189        113 KLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL  162 (222)
T ss_pred             HhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            88875       468888888776643222    3567899999998764

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=98.16  E-value=6.4e-06  Score=64.01  Aligned_cols=81  Identities=17%  Similarity=0.251  Sum_probs=56.7

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc--------c---hhHHH-HcCCCCCCeEEEEeCC
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--------Y---KDLAE-KYGVSGFPTLKFFPKG  106 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~--------~---~~l~~-~~~i~~~Pt~~~~~~g  106 (239)
                      .+++++|.|||+||++|++ .|.++++.++|+. .++.+..+.|++        .   ..+++ +|++. +|.+-=..  
T Consensus        24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~-~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~-Fpv~~k~d--   98 (183)
T PRK10606         24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWAD-QGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVT-FPMFSKIE--   98 (183)
T ss_pred             CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhh-CCeEEEEeeccccccCCCCCHHHHHHHHHHccCCC-ceeEEEEc--
Confidence            4789999999999999975 8899999999974 459999998842        1   24454 57763 66442221  


Q ss_pred             CcCccccCCCCCHHHHHHHHHHhhC
Q 026412          107 NKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus       107 ~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                            -.|. ....+-+|+++.++
T Consensus        99 ------vnG~-~~~pl~~~Lk~~~~  116 (183)
T PRK10606         99 ------VNGE-GRHPLYQKLIAAAP  116 (183)
T ss_pred             ------cCCC-CCCHHHHHHHHhCC
Confidence                  1222 45567788887765

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=98.15  E-value=2.9e-05  Score=58.14  Aligned_cols=32  Identities=38%  Similarity=0.632  Sum_probs=27.6

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHcc
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFT   70 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~   70 (239)
                      ..++.++.|+.++||||+++.|.+.++...++
T Consensus         4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~   35 (154)
T cd03023           4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP   35 (154)
T ss_pred             CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC
Confidence            35789999999999999999999998876653

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=98.15  E-value=1.9e-05  Score=64.58  Aligned_cols=90  Identities=16%  Similarity=0.276  Sum_probs=66.3

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----------------------------chhHH
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA   89 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (239)
                      .++++++.|| +.||+.|....+.+.+..+++... ++.++.|.+|.                            +..++
T Consensus        97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~-gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~ia  175 (261)
T PTZ00137         97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER-GVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVS  175 (261)
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHH
Confidence            4567777777 899999999999999999988643 35555555442                            24688


Q ss_pred             HHcCCC-----CCCeEEEEeCCCcCcccc----CCCCCHHHHHHHHHHh
Q 026412           90 EKYGVS-----GFPTLKFFPKGNKDGEEY----GGGRDLEDFVSFINEK  129 (239)
Q Consensus        90 ~~~~i~-----~~Pt~~~~~~g~~~~~~~----~g~~~~~~l~~~l~~~  129 (239)
                      +.||+.     ..|+.++++++|.....+    ...++.+++...|...
T Consensus       176 kayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al  224 (261)
T PTZ00137        176 KSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV  224 (261)
T ss_pred             HHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            899985     479999998766644332    3457999999888654

>KOG3414 consensus Component of the U4/U6

Probab=98.13  E-value=5.1e-05  Score=53.97  Aligned_cols=104  Identities=19%  Similarity=0.378  Sum_probs=78.2

Q ss_pred             hhhHHHHh--cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCC
Q 026412           30 EDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN  107 (239)
Q Consensus        30 ~~~f~~~~--~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~  107 (239)
                      ....++++  ...+.+++-|.-.|-|.|..+...+.++++...  +-..++-+|+++-+++.+-|++...|++.+|-++.
T Consensus        11 ~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vs--nfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~k   88 (142)
T KOG3414|consen   11 GWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVS--NFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNK   88 (142)
T ss_pred             HHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHh--hceEEEEEecchhhhhhhhhcccCCceEEEEEcCc
Confidence            45667777  567889999999999999999999999999875  23567778999999999999999999998886664


Q ss_pred             cCccccC-CC--------CCHHHHHHHHHHhhCCCCC
Q 026412          108 KDGEEYG-GG--------RDLEDFVSFINEKCGTSRD  135 (239)
Q Consensus       108 ~~~~~~~-g~--------~~~~~l~~~l~~~~~~~~~  135 (239)
                      -....+. |.        .+.+++++.+.-...-++.
T Consensus        89 HmkiD~gtgdn~Kin~~~~~kq~~Idiie~iyRga~K  125 (142)
T KOG3414|consen   89 HMKIDLGTGDNNKINFAFEDKQEFIDIIETIYRGARK  125 (142)
T ss_pred             eEEEeeCCCCCceEEEEeccHHHHHHHHHHHHHhhhc
Confidence            3333332 21        3566777766655443333

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>PRK13599 putative peroxiredoxin; Provisional

Probab=98.10  E-value=2.1e-05  Score=62.87  Aligned_cols=89  Identities=12%  Similarity=0.199  Sum_probs=66.1

Q ss_pred             CCc-EEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc---------------------------chhHHHH
Q 026412           40 DRG-ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------------YKDLAEK   91 (239)
Q Consensus        40 ~k~-vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~---------------------------~~~l~~~   91 (239)
                      +++ +++.|++.||+.|....+.+.++.++|... ++.++.|.+|.                           +..+++.
T Consensus        28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~-gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~  106 (215)
T PRK13599         28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL-NTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ  106 (215)
T ss_pred             CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence            455 567899999999999999999999998643 46677666553                           2357788


Q ss_pred             cCCC-------CCCeEEEEeCCCcCccc--c--CCCCCHHHHHHHHHHh
Q 026412           92 YGVS-------GFPTLKFFPKGNKDGEE--Y--GGGRDLEDFVSFINEK  129 (239)
Q Consensus        92 ~~i~-------~~Pt~~~~~~g~~~~~~--~--~g~~~~~~l~~~l~~~  129 (239)
                      ||+.       ..|+.++++++|+....  |  ...++.+++.+.|+..
T Consensus       107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l  155 (215)
T PRK13599        107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL  155 (215)
T ss_pred             cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence            8873       57999999877664332  2  2347899999998754

>PRK13191 putative peroxiredoxin; Provisional

Probab=98.10  E-value=1.9e-05  Score=63.12  Aligned_cols=90  Identities=12%  Similarity=0.170  Sum_probs=65.3

Q ss_pred             CCCcEEE-EEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc---------------------------chhHHH
Q 026412           39 QDRGALV-EFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------------YKDLAE   90 (239)
Q Consensus        39 ~~k~vlV-~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~---------------------------~~~l~~   90 (239)
                      .++++++ .|+++||+.|....+.+.+.+.++... ++.++.|.+|.                           +..+++
T Consensus        32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~-g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~  110 (215)
T PRK13191         32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL-NTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAK  110 (215)
T ss_pred             CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHH
Confidence            3555554 788999999999999999999998643 46676666552                           236677


Q ss_pred             HcCCC-------CCCeEEEEeCCCcCcccc----CCCCCHHHHHHHHHHh
Q 026412           91 KYGVS-------GFPTLKFFPKGNKDGEEY----GGGRDLEDFVSFINEK  129 (239)
Q Consensus        91 ~~~i~-------~~Pt~~~~~~g~~~~~~~----~g~~~~~~l~~~l~~~  129 (239)
                      .||+.       ..|+.++++++|.....+    .-.|+.+++...|+..
T Consensus       111 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al  160 (215)
T PRK13191        111 RLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL  160 (215)
T ss_pred             HcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            88863       368888888776644322    2347999999999764

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=98.07  E-value=2.3e-05  Score=49.23  Aligned_cols=51  Identities=24%  Similarity=0.424  Sum_probs=38.0

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch----hHHHHcCCCCCCeEEE
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVSGFPTLKF  102 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~----~l~~~~~i~~~Pt~~~  102 (239)
                      ++.|+.+||++|+.....+++.        ++.+..+|++..+    ++.+..+..++|++++
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~~--------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i   55 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDEK--------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI   55 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT--------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred             cEEEEcCCCcCHHHHHHHHHHc--------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence            5789999999999998777422        4667777877654    3444459999999865

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=98.02  E-value=1.3e-05  Score=53.67  Aligned_cols=51  Identities=24%  Similarity=0.412  Sum_probs=38.5

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc-----hhHHHHcCCCCCCeE
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-----KDLAEKYGVSGFPTL  100 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~-----~~l~~~~~i~~~Pt~  100 (239)
                      ++.|+++|||+|+.+.+.+.++..      .+.+..++.+.+     ..+.+..|..++|++
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v   57 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGV------KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV   57 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCC------CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE
Confidence            578999999999999999887654      345667776543     235566788899996

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.01  E-value=8.2e-05  Score=67.25  Aligned_cols=99  Identities=17%  Similarity=0.322  Sum_probs=78.8

Q ss_pred             CcEEcChhhHHHHhc-CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEE
Q 026412           24 DVVVLTEDNFEKEVG-QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF  102 (239)
Q Consensus        24 ~v~~l~~~~f~~~~~-~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~  102 (239)
                      .-..++++..+.+-. .+..-+-.|+++.||+|......+.+++...+   ++..-.+|....++++++|++.++|++++
T Consensus       100 ~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p---~i~~~~id~~~~~~~~~~~~v~~VP~~~i  176 (515)
T TIGR03140       100 HGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP---NISHTMIDGALFQDEVEALGIQGVPAVFL  176 (515)
T ss_pred             CCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC---CceEEEEEchhCHHHHHhcCCcccCEEEE
Confidence            346677777776653 34445888999999999999999999988854   78888899999999999999999999865


Q ss_pred             EeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412          103 FPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus       103 ~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                        +| +  ..+.|..+.+++.+.+.+..
T Consensus       177 --~~-~--~~~~g~~~~~~~~~~l~~~~  199 (515)
T TIGR03140       177 --NG-E--EFHNGRMDLAELLEKLEETA  199 (515)
T ss_pred             --CC-c--EEEecCCCHHHHHHHHhhcc
Confidence              33 2  34778899999988887653

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=97.99  E-value=2.1e-05  Score=53.44  Aligned_cols=75  Identities=25%  Similarity=0.328  Sum_probs=52.0

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc----hhHHHHcCC--CCCCeEEEEeCCCcCccccCCCC
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY----KDLAEKYGV--SGFPTLKFFPKGNKDGEEYGGGR  117 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~----~~l~~~~~i--~~~Pt~~~~~~g~~~~~~~~g~~  117 (239)
                      ++.|+.+|||+|.+....+.++...+.   .+.+..+|++..    .++...++-  .++|+++  -+| +    +.|  
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~~---~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g-~----~ig--   69 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIERA---DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDE-K----HVG--   69 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCcccC---CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECC-E----Eec--
Confidence            678999999999999999888765432   466777777632    356666664  6899973  344 2    223  


Q ss_pred             CHHHHHHHHHHhh
Q 026412          118 DLEDFVSFINEKC  130 (239)
Q Consensus       118 ~~~~l~~~l~~~~  130 (239)
                      ..+++.+++++..
T Consensus        70 G~~dl~~~~~~~~   82 (86)
T TIGR02183        70 GCTDFEQLVKENF   82 (86)
T ss_pred             CHHHHHHHHHhcc
Confidence            4578888887654

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=97.98  E-value=0.0004  Score=50.95  Aligned_cols=106  Identities=17%  Similarity=0.273  Sum_probs=74.9

Q ss_pred             CcEEcChhhH-HHHhcCCCcEEEEEECCC---ChH-H-hhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCC--
Q 026412           24 DVVVLTEDNF-EKEVGQDRGALVEFYAPW---CGH-C-KNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS--   95 (239)
Q Consensus        24 ~v~~l~~~~f-~~~~~~~k~vlV~F~a~w---C~~-C-~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~--   95 (239)
                      .+.+++..++ ++.-.+++ +-|.+.-|.   |.. + ......+.++|+.+++++ +.|+.+|.+++..+.+.||+.  
T Consensus         3 ~~~~l~~~~~~~~~C~~~~-~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~-i~Fv~vd~~~~~~~~~~fgl~~~   80 (130)
T cd02983           3 EIIELTSEDVFEETCEEKQ-LCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKP-WGWLWTEAGAQLDLEEALNIGGF   80 (130)
T ss_pred             ceEEecCHHHHHhhccCCC-eEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCc-EEEEEEeCcccHHHHHHcCCCcc
Confidence            4566666554 44454443 333333443   322 2 356788999999997432 999999999988899999996  


Q ss_pred             CCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412           96 GFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus        96 ~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      ++|+++++...+.....+.|..+.+.+.+|+++.+.
T Consensus        81 ~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~  116 (130)
T cd02983          81 GYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSY  116 (130)
T ss_pred             CCCEEEEEecccCccccccCccCHHHHHHHHHHHHc
Confidence            499999997754322226799999999999998864

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=97.97  E-value=5.5e-05  Score=59.76  Aligned_cols=90  Identities=17%  Similarity=0.245  Sum_probs=64.9

Q ss_pred             CCCcEEEEEEC-CCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----------------------------chhHH
Q 026412           39 QDRGALVEFYA-PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA   89 (239)
Q Consensus        39 ~~k~vlV~F~a-~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (239)
                      .+++++|.||+ .||++|....+.+.++++++... ++.++.|.+|.                            ..+++
T Consensus        35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~-g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia  113 (199)
T PTZ00253         35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL-NCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIA  113 (199)
T ss_pred             CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHH
Confidence            46789999995 88999999999999999998754 57777776552                            12577


Q ss_pred             HHcCCC------CCCeEEEEeCCCcCcccc----CCCCCHHHHHHHHHHh
Q 026412           90 EKYGVS------GFPTLKFFPKGNKDGEEY----GGGRDLEDFVSFINEK  129 (239)
Q Consensus        90 ~~~~i~------~~Pt~~~~~~g~~~~~~~----~g~~~~~~l~~~l~~~  129 (239)
                      +.||+.      .+|+.+++++.+.....+    .-.++.+++++.|...
T Consensus       114 ~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~  163 (199)
T PTZ00253        114 RSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF  163 (199)
T ss_pred             HHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence            788875      368888888776543322    2346788888877644

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=97.95  E-value=0.0002  Score=51.09  Aligned_cols=99  Identities=16%  Similarity=0.166  Sum_probs=70.4

Q ss_pred             EcChhhHHHHhcCCCcEEEEEE----CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCC----CC
Q 026412           27 VLTEDNFEKEVGQDRGALVEFY----APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG----FP   98 (239)
Q Consensus        27 ~l~~~~f~~~~~~~k~vlV~F~----a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~----~P   98 (239)
                      ..+.+|.....  ..+.++.|+    ++.-..-..+.+.+.++|+.++. +.+.|+.+|.++.....+.||+..    +|
T Consensus         3 ~~~~en~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~-gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P   79 (111)
T cd03073           3 HRTKDNRAQFT--KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPD-RKLNFAVADKEDFSHELEEFGLDFSGGEKP   79 (111)
T ss_pred             eeccchHHHhc--cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcC-CeEEEEEEcHHHHHHHHHHcCCCcccCCCC
Confidence            45666666664  333444433    23334456788899999999973 369999999998777889999984    99


Q ss_pred             eEEEEeCCCcCccccCCCC-CHHHHHHHHHHh
Q 026412           99 TLKFFPKGNKDGEEYGGGR-DLEDFVSFINEK  129 (239)
Q Consensus        99 t~~~~~~g~~~~~~~~g~~-~~~~l~~~l~~~  129 (239)
                      ++.++..++ ......+.. +.+.|.+|+++.
T Consensus        80 ~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f  110 (111)
T cd03073          80 VVAIRTAKG-KKYVMEEEFSDVDALEEFLEDF  110 (111)
T ss_pred             EEEEEeCCC-CccCCCcccCCHHHHHHHHHHh
Confidence            999987543 222346677 999999999763

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=97.94  E-value=0.00011  Score=60.21  Aligned_cols=83  Identities=14%  Similarity=0.247  Sum_probs=58.1

Q ss_pred             CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeC-------------------------------------
Q 026412           40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA-------------------------------------   82 (239)
Q Consensus        40 ~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~-------------------------------------   82 (239)
                      .+.+++.|+-|.||+|+++++.+..+.+.    +++.+..+..                                     
T Consensus       117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~----g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~  192 (251)
T PRK11657        117 APRIVYVFADPNCPYCKQFWQQARPWVDS----GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLK  192 (251)
T ss_pred             CCeEEEEEECCCChhHHHHHHHHHHHhhc----CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCC
Confidence            46789999999999999999887765443    1232222110                                     


Q ss_pred             -------------ccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHH
Q 026412           83 -------------DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN  127 (239)
Q Consensus        83 -------------~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~  127 (239)
                                   +++..+++++|++++|++++-+++ ..+....|..++++|.+.+.
T Consensus       193 ~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~-G~~~~v~G~~~~~~L~~~l~  249 (251)
T PRK11657        193 PPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKD-GTLQQVVGLPDPAQLAEIMG  249 (251)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC-CCEEEecCCCCHHHHHHHhC
Confidence                         012357788999999998776543 24446789999999988874

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=97.94  E-value=3.4e-05  Score=51.78  Aligned_cols=79  Identities=29%  Similarity=0.428  Sum_probs=59.0

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCC-cCccccCCCCCHHHH
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN-KDGEEYGGGRDLEDF  122 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~-~~~~~~~g~~~~~~l  122 (239)
                      ++.|+.+.|+-|......+..+....    .+.+-.||+++++.+..+|+. .+|.+.+-..++ .......+..+.+.+
T Consensus         2 l~l~~k~~C~LC~~a~~~L~~~~~~~----~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L   76 (81)
T PF05768_consen    2 LTLYTKPGCHLCDEAKEILEEVAAEF----PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQL   76 (81)
T ss_dssp             EEEEE-SSSHHHHHHHHHHHHCCTTS----TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHH
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHhhc----CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHH
Confidence            68899999999999998888765543    589999999999999999997 699965543211 113444567899999


Q ss_pred             HHHHH
Q 026412          123 VSFIN  127 (239)
Q Consensus       123 ~~~l~  127 (239)
                      .+||+
T Consensus        77 ~~~L~   81 (81)
T PF05768_consen   77 RAWLE   81 (81)
T ss_dssp             HHHHH
T ss_pred             HHHhC
Confidence            98874

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=97.84  E-value=8.8e-05  Score=52.10  Aligned_cols=96  Identities=20%  Similarity=0.251  Sum_probs=66.1

Q ss_pred             CCCcEEcChhhHHHHhcCCCcEEEEEECCC--ChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCe
Q 026412           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPW--CGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT   99 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~w--C~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt   99 (239)
                      ..+...++.++++..+......+++|....  |+.|....=.+-++.+.++  +.+..+-++-+....+..+||+..+|+
T Consensus         8 ~~g~~~vd~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~--~~~~~avv~~~~e~~L~~r~gv~~~Pa   85 (107)
T PF07449_consen    8 RHGWPRVDADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFP--GRFRGAVVARAAERALAARFGVRRWPA   85 (107)
T ss_dssp             T-TEEEE-CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTST--TSEEEEEEEHHHHHHHHHHHT-TSSSE
T ss_pred             hcCCeeechhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhh--CccceEEECchhHHHHHHHhCCccCCe
Confidence            457788999999999977666666655432  4555555556777777776  345666667667789999999999999


Q ss_pred             EEEEeCCCcCccccCCCCCHH
Q 026412          100 LKFFPKGNKDGEEYGGGRDLE  120 (239)
Q Consensus       100 ~~~~~~g~~~~~~~~g~~~~~  120 (239)
                      +++|++| .......|-++-.
T Consensus        86 Lvf~R~g-~~lG~i~gi~dW~  105 (107)
T PF07449_consen   86 LVFFRDG-RYLGAIEGIRDWA  105 (107)
T ss_dssp             EEEEETT-EEEEEEESSSTHH
T ss_pred             EEEEECC-EEEEEecCeeccc
Confidence            9999988 4444455555543

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=97.83  E-value=0.0001  Score=48.15  Aligned_cols=67  Identities=13%  Similarity=0.277  Sum_probs=46.2

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHc---CCCCCCeEEEEeCCCcCccccCCCCCHH
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKY---GVSGFPTLKFFPKGNKDGEEYGGGRDLE  120 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~---~i~~~Pt~~~~~~g~~~~~~~~g~~~~~  120 (239)
                      +..|+.++|++|++....+.+        .++.+-.+|+++++...+.+   |..++|++++  +|.    ...|+.+++
T Consensus         1 v~ly~~~~Cp~C~~ak~~L~~--------~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~----~~~~G~~~~   66 (72)
T TIGR02194         1 ITVYSKNNCVQCKMTKKALEE--------HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD----LSWSGFRPD   66 (72)
T ss_pred             CEEEeCCCCHHHHHHHHHHHH--------CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC----cEEeccCHH
Confidence            357889999999999887763        15677788888776555555   7778999744  331    134556666


Q ss_pred             HHHH
Q 026412          121 DFVS  124 (239)
Q Consensus       121 ~l~~  124 (239)
                      .+.+
T Consensus        67 ~~~~   70 (72)
T TIGR02194        67 KLKA   70 (72)
T ss_pred             HHHh
Confidence            6654

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.82  E-value=7.2e-05  Score=48.16  Aligned_cols=50  Identities=22%  Similarity=0.324  Sum_probs=36.5

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchh----HHHHcCCCCCCeEE
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD----LAEKYGVSGFPTLK  101 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~~  101 (239)
                      ++.|+++||++|++..+.+.+..        +.+..+|++.+++    +.+..+...+|+++
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~~--------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~   55 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESLG--------IEFEEIDILEDGELREELKELSGWPTVPQIF   55 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC--------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence            57899999999999988887553        4566777775543    34445777889873

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=97.81  E-value=8.8e-05  Score=49.45  Aligned_cols=54  Identities=17%  Similarity=0.295  Sum_probs=39.5

Q ss_pred             CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc---hhHHHHcCCCCCCeEE
Q 026412           40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY---KDLAEKYGVSGFPTLK  101 (239)
Q Consensus        40 ~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~---~~l~~~~~i~~~Pt~~  101 (239)
                      .+.-++.|+.+||++|++....+.+.        ++.+-.+|++++   ..+....|...+|+++
T Consensus         6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~--------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~   62 (79)
T TIGR02190         6 KPESVVVFTKPGCPFCAKAKATLKEK--------GYDFEEIPLGNDARGRSLRAVTGATTVPQVF   62 (79)
T ss_pred             CCCCEEEEECCCCHhHHHHHHHHHHc--------CCCcEEEECCCChHHHHHHHHHCCCCcCeEE
Confidence            44568899999999999998888632        355556776644   3455567888999984

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.75  E-value=0.00027  Score=64.56  Aligned_cols=93  Identities=12%  Similarity=0.140  Sum_probs=77.1

Q ss_pred             CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCC-cCccccCCCCC
Q 026412           40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN-KDGEEYGGGRD  118 (239)
Q Consensus        40 ~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~-~~~~~~~g~~~  118 (239)
                      +...++.|+.+.|..|.++...++++++.-   +.+.+...|..++.+++++|+++..|++.+++.++ ....+|.|-+.
T Consensus       366 ~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s---~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~  442 (555)
T TIGR03143       366 NPVTLLLFLDGSNEKSAELQSFLGEFASLS---EKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPS  442 (555)
T ss_pred             CCEEEEEEECCCchhhHHHHHHHHHHHhcC---CcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCc
Confidence            445677888999999999999999998653   46888888888889999999999999999996443 35589999999


Q ss_pred             HHHHHHHHHHhhCCCCC
Q 026412          119 LEDFVSFINEKCGTSRD  135 (239)
Q Consensus       119 ~~~l~~~l~~~~~~~~~  135 (239)
                      -++|..||......+..
T Consensus       443 G~Ef~s~i~~i~~~~~~  459 (555)
T TIGR03143       443 GHELNSFILALYNAAGP  459 (555)
T ss_pred             cHhHHHHHHHHHHhcCC
Confidence            99999999888765543

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=97.70  E-value=0.0001  Score=48.99  Aligned_cols=49  Identities=16%  Similarity=0.385  Sum_probs=34.9

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhH----HHHcCCCCCCeE
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDL----AEKYGVSGFPTL  100 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l----~~~~~i~~~Pt~  100 (239)
                      ++.|+.+|||+|.+....+.+.        ++.+-.+|++.+++.    .+..+..++|++
T Consensus         1 v~ly~~~~Cp~C~~a~~~L~~~--------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i   53 (79)
T TIGR02181         1 VTIYTKPYCPYCTRAKALLSSK--------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQI   53 (79)
T ss_pred             CEEEecCCChhHHHHHHHHHHc--------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEE
Confidence            4678899999999998888743        344556666655433    344577789997

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>PHA03050 glutaredoxin; Provisional

Probab=97.69  E-value=0.00018  Score=51.00  Aligned_cols=62  Identities=11%  Similarity=0.215  Sum_probs=39.0

Q ss_pred             HHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc-cc----hhHHHHcCCCCCCeE
Q 026412           34 EKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-KY----KDLAEKYGVSGFPTL  100 (239)
Q Consensus        34 ~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~-~~----~~l~~~~~i~~~Pt~  100 (239)
                      ++.+.+++  ++.|..+|||+|++....+.+..-..   ..+....+|-. ..    ..+.+..|.+.+|++
T Consensus         7 ~~~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~---~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I   73 (108)
T PHA03050          7 QQRLANNK--VTIFVKFTCPFCRNALDILNKFSFKR---GAYEIVDIKEFKPENELRDYFEQITGGRTVPRI   73 (108)
T ss_pred             HHHhccCC--EEEEECCCChHHHHHHHHHHHcCCCc---CCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE
Confidence            34444443  78899999999999988877654322   13444444421 12    245555678889997

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=97.64  E-value=0.00015  Score=50.61  Aligned_cols=54  Identities=24%  Similarity=0.282  Sum_probs=34.6

Q ss_pred             EEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch-------hHHHHcCCCCCCeEEEEeCC
Q 026412           43 ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-------DLAEKYGVSGFPTLKFFPKG  106 (239)
Q Consensus        43 vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~-------~l~~~~~i~~~Pt~~~~~~g  106 (239)
                      -++.|..||||+|++....+.+..        +.+..+|++..+       .+.+..|...+|.+  |-+|
T Consensus         9 ~Vvvysk~~Cp~C~~ak~~L~~~~--------i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g   69 (99)
T TIGR02189         9 AVVIFSRSSCCMCHVVKRLLLTLG--------VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGG   69 (99)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHcC--------CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECC
Confidence            377899999999999987666442        333445554332       23333467789996  4444

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.61  E-value=0.00031  Score=45.98  Aligned_cols=50  Identities=20%  Similarity=0.305  Sum_probs=35.7

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHH----HHcCCC-CCCeEE
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLA----EKYGVS-GFPTLK  101 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~----~~~~i~-~~Pt~~  101 (239)
                      ++.|+.+||++|.+....+.+.        ++.+-.+|++.+++..    +..+.. ++|+++
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~   56 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDKK--------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF   56 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE
Confidence            5788999999999998877652        3566677777654433    345766 899863

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>PRK10329 glutaredoxin-like protein; Provisional

Probab=97.61  E-value=0.00069  Score=45.36  Aligned_cols=71  Identities=11%  Similarity=0.136  Sum_probs=50.3

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHH---HHcCCCCCCeEEEEeCCCcCccccCCCCCHH
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLA---EKYGVSGFPTLKFFPKGNKDGEEYGGGRDLE  120 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~---~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~  120 (239)
                      ++.|+.+||++|.+....+.+        .++.+-.+|++++++..   ...|...+|++++  ++ .    ..++.+++
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~~--------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~-~----~~~Gf~~~   67 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAMES--------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GD-L----SWSGFRPD   67 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHHH--------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CC-E----EEecCCHH
Confidence            568899999999998877743        25778888888766533   3446678999854  33 1    23456888


Q ss_pred             HHHHHHHHh
Q 026412          121 DFVSFINEK  129 (239)
Q Consensus       121 ~l~~~l~~~  129 (239)
                      .+.+++...
T Consensus        68 ~l~~~~~~~   76 (81)
T PRK10329         68 MINRLHPAP   76 (81)
T ss_pred             HHHHHHHhh
Confidence            888887654

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=97.60  E-value=0.00024  Score=48.46  Aligned_cols=59  Identities=32%  Similarity=0.417  Sum_probs=42.8

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeC--cc------------------------------chhHHHH
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA--DK------------------------------YKDLAEK   91 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~--~~------------------------------~~~l~~~   91 (239)
                      ++.|+.+.||+|..+.+.+.++.....  +++.+..+.+  ..                              +...+.+
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   78 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADD--GGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARA   78 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcC--CcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence            468999999999999999999875544  3454544432  22                              1245678


Q ss_pred             cCCCCCCeEEEEe
Q 026412           92 YGVSGFPTLKFFP  104 (239)
Q Consensus        92 ~~i~~~Pt~~~~~  104 (239)
                      +|+.++|++++..
T Consensus        79 ~g~~g~Pt~v~~~   91 (98)
T cd02972          79 LGVTGTPTFVVNG   91 (98)
T ss_pred             cCCCCCCEEEECC
Confidence            8999999987764

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=97.57  E-value=0.001  Score=48.00  Aligned_cols=82  Identities=18%  Similarity=0.326  Sum_probs=62.3

Q ss_pred             ChhhHHHHh--cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE-EEeC
Q 026412           29 TEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK-FFPK  105 (239)
Q Consensus        29 ~~~~f~~~~--~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~-~~~~  105 (239)
                      +....++++  ...+.+++-|..+|-+.|.++...+.++++...  +-..++-||+++-+++.+-|.+. -|..+ +|-+
T Consensus         7 s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~--~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~r   83 (133)
T PF02966_consen    7 SGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVK--NFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFR   83 (133)
T ss_dssp             SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHT--TTEEEEEEETTTTHCCHHHTTS--SSEEEEEEET
T ss_pred             ccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhh--cceEEEEEEcccchhhhcccccC-CCeEEEEEec
Confidence            345677777  678999999999999999999999999999876  34778889999999999999998 77654 4435


Q ss_pred             CCcCcccc
Q 026412          106 GNKDGEEY  113 (239)
Q Consensus       106 g~~~~~~~  113 (239)
                      +.-....+
T Consensus        84 nkhm~vD~   91 (133)
T PF02966_consen   84 NKHMMVDF   91 (133)
T ss_dssp             TEEEEEES
T ss_pred             CeEEEEEe
Confidence            43333333

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=97.55  E-value=0.00055  Score=52.64  Aligned_cols=32  Identities=25%  Similarity=0.585  Sum_probs=29.3

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHcc
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFT   70 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~   70 (239)
                      ..++.++.|+.+.||||+.+++.+..+.++++
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~   45 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLP   45 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHhCC
Confidence            67889999999999999999999999988874

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=97.52  E-value=0.00049  Score=44.96  Aligned_cols=49  Identities=16%  Similarity=0.354  Sum_probs=36.7

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch----hHHHHcCCCCCCeE
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVSGFPTL  100 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~----~l~~~~~i~~~Pt~  100 (239)
                      ++.|+.+||++|++....+++.        ++.+..+|++.++    ++.+..+-..+|++
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~~--------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v   55 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLREK--------GLPYVEINIDIFPERKAELEERTGSSVVPQI   55 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHHhCCCCcCEE
Confidence            6789999999999998777742        4667777887654    35555577789987

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=97.50  E-value=0.00019  Score=55.46  Aligned_cols=72  Identities=24%  Similarity=0.341  Sum_probs=58.9

Q ss_pred             hHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCC-CCHHHHHHHHHHhhCCCC
Q 026412           57 NLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG-RDLEDFVSFINEKCGTSR  134 (239)
Q Consensus        57 ~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~-~~~~~l~~~l~~~~~~~~  134 (239)
                      .....|.++|+.+.  +.+.|+.+.   +.++++++++.. |++++|+++.+....|.|. .+.+.|.+||....-+..
T Consensus         7 ~~~~~f~~~A~~~~--~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v   79 (184)
T PF13848_consen    7 ELFEIFEEAAEKLK--GDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLV   79 (184)
T ss_dssp             HHHHHHHHHHHHHT--TTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSC
T ss_pred             HHHHHHHHHHHhCc--CCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhccccc
Confidence            44567889999986  358888775   567899999998 9999999976778899998 899999999998865543

...

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=97.47  E-value=0.0016  Score=44.65  Aligned_cols=97  Identities=19%  Similarity=0.215  Sum_probs=72.6

Q ss_pred             cChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc--chhHHHHcCCC----CCCeEE
Q 026412           28 LTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--YKDLAEKYGVS----GFPTLK  101 (239)
Q Consensus        28 l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~----~~Pt~~  101 (239)
                      -+...|.+++.....|+|.|..+--..-.. ...+.++|+...+  .=.++.|||.+  ...||+++.+.    .-|..+
T Consensus         7 ~d~KdfKKLLRTr~NVLvLy~ks~k~a~~~-Lk~~~~~A~~vkG--~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~L   83 (112)
T cd03067           7 SDHKDFKKLLRTRNNVLVLYSKSAKSAEAL-LKLLSDVAQAVKG--QGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVEL   83 (112)
T ss_pred             cchHHHHHHHhhcCcEEEEEecchhhHHHH-HHHHHHHHHHhcC--ceeEEEEecCChHHHHHHHHHccCCCCCCCcchh
Confidence            345789999988889999998766443333 4477888888763  45678899985  78999999998    555543


Q ss_pred             -EEeCCCcCccccCCCCCHHHHHHHHHH
Q 026412          102 -FFPKGNKDGEEYGGGRDLEDFVSFINE  128 (239)
Q Consensus       102 -~~~~g~~~~~~~~g~~~~~~l~~~l~~  128 (239)
                       -|++| .-...|.-..+...++.|+++
T Consensus        84 kHYKdG-~fHkdYdR~~t~kSmv~FlrD  110 (112)
T cd03067          84 KHYKDG-DFHTEYNRQLTFKSMVAFLRD  110 (112)
T ss_pred             hcccCC-CccccccchhhHHHHHHHhhC
Confidence             45555 666788888999999999864

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=97.39  E-value=0.0014  Score=45.85  Aligned_cols=92  Identities=20%  Similarity=0.242  Sum_probs=61.6

Q ss_pred             ChhhHHHHhcC--CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch----hHHHHcCCC-CCCeEE
Q 026412           29 TEDNFEKEVGQ--DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVS-GFPTLK  101 (239)
Q Consensus        29 ~~~~f~~~~~~--~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~----~l~~~~~i~-~~Pt~~  101 (239)
                      +.+++++++..  .++++++=.++.||-.......|++.......  .+.++.+|+-+++    .++++|||. .-|.++
T Consensus         6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~--~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~i   83 (105)
T PF11009_consen    6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPD--EIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVI   83 (105)
T ss_dssp             SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT------EEEEEGGGGHHHHHHHHHHHT----SSEEE
T ss_pred             CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc--cceEEEEEEEeCchhHHHHHHHhCCCcCCCcEE
Confidence            56788998844  78888888999999999999999999888652  3888899887554    678899998 489999


Q ss_pred             EEeCCCcCccccCCCCCHHHH
Q 026412          102 FFPKGNKDGEEYGGGRDLEDF  122 (239)
Q Consensus       102 ~~~~g~~~~~~~~g~~~~~~l  122 (239)
                      ++++|......-.+..+.+.+
T Consensus        84 li~~g~~v~~aSH~~It~~~l  104 (105)
T PF11009_consen   84 LIKNGKVVWHASHWDITAEAL  104 (105)
T ss_dssp             EEETTEEEEEEEGGG-SHHHH
T ss_pred             EEECCEEEEECccccCCHHhc
Confidence            999983222222334555543

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=97.38  E-value=0.00076  Score=43.90  Aligned_cols=66  Identities=18%  Similarity=0.351  Sum_probs=43.3

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch---hHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHH
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK---DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLE  120 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~---~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~  120 (239)
                      ++.|..+|||+|.+....+.+.        ++.+..+|++.+.   .+....|...+|.+  |-+| +    +.|  ..+
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~~--------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g-~----~ig--g~~   65 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQEN--------GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDG-E----LIG--GSD   65 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc--------CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECC-E----EEe--CHH
Confidence            6789999999999998777642        3556666766443   23344588899997  4444 2    123  356


Q ss_pred             HHHHHH
Q 026412          121 DFVSFI  126 (239)
Q Consensus       121 ~l~~~l  126 (239)
                      ++.+|+
T Consensus        66 ~l~~~l   71 (72)
T cd03029          66 DLEKYF   71 (72)
T ss_pred             HHHHHh
Confidence            666665

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=97.36  E-value=0.00067  Score=45.30  Aligned_cols=51  Identities=18%  Similarity=0.389  Sum_probs=35.5

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch-----hHHHHc-CCCCCCeEEE
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-----DLAEKY-GVSGFPTLKF  102 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~-----~l~~~~-~i~~~Pt~~~  102 (239)
                      ++.|..+|||+|++....+.+        .++.+..++++.+.     +..++- |.+.+|.+++
T Consensus         3 v~iyt~~~CPyC~~ak~~L~~--------~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i   59 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLDR--------KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI   59 (80)
T ss_pred             EEEEECCCCchHHHHHHHHHH--------cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence            677889999999998777762        24666666665443     334444 7889999744

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=97.28  E-value=0.0018  Score=44.92  Aligned_cols=60  Identities=13%  Similarity=0.227  Sum_probs=37.8

Q ss_pred             HHHHhcCCCcEEEEEE----CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchh----HHHHcCCCCCCeEE
Q 026412           33 FEKEVGQDRGALVEFY----APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD----LAEKYGVSGFPTLK  101 (239)
Q Consensus        33 f~~~~~~~k~vlV~F~----a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~~  101 (239)
                      .++.+.+ .+++|+-.    +||||+|++....+.+.        ++.+..+|++++++    +.+..|...+|.++
T Consensus         5 v~~~i~~-~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~--------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf   72 (97)
T TIGR00365         5 IKEQIKE-NPVVLYMKGTPQFPQCGFSARAVQILKAC--------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY   72 (97)
T ss_pred             HHHHhcc-CCEEEEEccCCCCCCCchHHHHHHHHHHc--------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEE
Confidence            3445544 34544443    39999999998777653        24466777765543    33455677899873

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>PRK10638 glutaredoxin 3; Provisional

Probab=97.20  E-value=0.0014  Score=43.96  Aligned_cols=50  Identities=12%  Similarity=0.266  Sum_probs=35.4

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch----hHHHHcCCCCCCeEE
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVSGFPTLK  101 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~----~l~~~~~i~~~Pt~~  101 (239)
                      ++.|..+||++|++....+++.        ++.+..+|++.++    ++.+..+...+|+++
T Consensus         4 v~ly~~~~Cp~C~~a~~~L~~~--------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~   57 (83)
T PRK10638          4 VEIYTKATCPFCHRAKALLNSK--------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIF   57 (83)
T ss_pred             EEEEECCCChhHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence            5678899999999998777743        3455667776554    344555777899873

>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.17  E-value=0.0057  Score=55.82  Aligned_cols=85  Identities=22%  Similarity=0.364  Sum_probs=67.6

Q ss_pred             CCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHH---HHHHHHccCCCCeEEEEEeCccchhHHHHcC-----
Q 026412           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDADKYKDLAEKYG-----   93 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~---~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~-----   93 (239)
                      +-.+..-.++.|.+....+||+++-...+||.+|.-|..+-   .++|+.+.  .+++-++||.++-|++-+.|.     
T Consensus        25 PV~W~pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN--~~FV~IKVDREERPDvD~~Ym~~~q~  102 (667)
T COG1331          25 PVDWYPWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILN--ENFVPVKVDREERPDVDSLYMNASQA  102 (667)
T ss_pred             CccccccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHH--hCceeeeEChhhccCHHHHHHHHHHH
Confidence            34566788999999999999999999999999999997542   44566553  478999999998887777664     


Q ss_pred             ---CCCCCeEEEEeCCCc
Q 026412           94 ---VSGFPTLKFFPKGNK  108 (239)
Q Consensus        94 ---i~~~Pt~~~~~~g~~  108 (239)
                         --|+|-.+|..++++
T Consensus       103 ~tG~GGWPLtVfLTPd~k  120 (667)
T COG1331         103 ITGQGGWPLTVFLTPDGK  120 (667)
T ss_pred             hccCCCCceeEEECCCCc
Confidence               447999988877654

>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C

Probab=97.09  E-value=0.002  Score=49.86  Aligned_cols=27  Identities=22%  Similarity=0.567  Sum_probs=21.9

Q ss_pred             EEECCCChHHhhHhHHHHHHHHHccCC
Q 026412           46 EFYAPWCGHCKNLAPTYEKVAAAFTLE   72 (239)
Q Consensus        46 ~F~a~wC~~C~~~~~~~~~~a~~~~~~   72 (239)
                      .|..|+|++|-...|.+.++...++..
T Consensus         2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~   28 (176)
T PF13743_consen    2 LFVDPLCSWCWGFEPELRKLKEEYGNK   28 (176)
T ss_dssp             EEE-TT-HHHHHHHHHHHHHHHHS-TT
T ss_pred             eeeCCCChHHHHhHHHHHHHHHHcCCc
Confidence            589999999999999999999998743

>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=97.08  E-value=0.0066  Score=47.02  Aligned_cols=101  Identities=23%  Similarity=0.364  Sum_probs=76.2

Q ss_pred             CCcEEcChhhHHHHh---cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCe
Q 026412           23 DDVVVLTEDNFEKEV---GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT   99 (239)
Q Consensus        23 ~~v~~l~~~~f~~~~---~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt   99 (239)
                      ..|..++...|.+.+   ..+-+|+|..|...-+.|.-+...++.++..|+   .+.|+++-.+...   ..|.=...||
T Consensus        91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp---~iKFVki~at~cI---pNYPe~nlPT  164 (240)
T KOG3170|consen   91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFP---QIKFVKIPATTCI---PNYPESNLPT  164 (240)
T ss_pred             cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCC---cceEEeccccccc---CCCcccCCCe
Confidence            568889999998887   446679999999999999999999999999997   7888888665432   2344557999


Q ss_pred             EEEEeCCCcC-----ccccCCC-CCHHHHHHHHHHh
Q 026412          100 LKFFPKGNKD-----GEEYGGG-RDLEDFVSFINEK  129 (239)
Q Consensus       100 ~~~~~~g~~~-----~~~~~g~-~~~~~l~~~l~~~  129 (239)
                      +++|..|.-.     +..+.|. .+.+++..++-+.
T Consensus       165 l~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa  200 (240)
T KOG3170|consen  165 LLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQA  200 (240)
T ss_pred             EEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence            9999888411     1233443 5778887777653

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=97.03  E-value=0.027  Score=39.26  Aligned_cols=92  Identities=15%  Similarity=0.229  Sum_probs=65.4

Q ss_pred             ChhhHHHHhc-CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCC
Q 026412           29 TEDNFEKEVG-QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN  107 (239)
Q Consensus        29 ~~~~f~~~~~-~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~  107 (239)
                      +.+..++++. .+..++|-|+..--+   .....|.++|..+.  +++.|+..   .+.++...+++. .|.++++++..
T Consensus         7 ~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R--~d~~F~~~---~~~~~~~~~~~~-~~~i~l~~~~~   77 (102)
T cd03066           7 SERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFH--PYIKFFAT---FDSKVAKKLGLK-MNEVDFYEPFM   77 (102)
T ss_pred             CHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhh--cCCEEEEE---CcHHHHHHcCCC-CCcEEEeCCCC
Confidence            4566888887 777777766665433   34567888998875  35666543   345677888775 79999997643


Q ss_pred             cCcccc-CCCCCHHHHHHHHHHh
Q 026412          108 KDGEEY-GGGRDLEDFVSFINEK  129 (239)
Q Consensus       108 ~~~~~~-~g~~~~~~l~~~l~~~  129 (239)
                      .....| .|..+.+.|.+||...
T Consensus        78 e~~~~y~~g~~~~~~l~~fi~~~  100 (102)
T cd03066          78 EEPVTIPDKPYSEEELVDFVEEH  100 (102)
T ss_pred             CCCcccCCCCCCHHHHHHHHHHh
Confidence            455678 7788999999999753

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=97.01  E-value=0.0034  Score=42.85  Aligned_cols=57  Identities=19%  Similarity=0.356  Sum_probs=35.9

Q ss_pred             HHhcCCCcEEEEEEC----CCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchh----HHHHcCCCCCCeE
Q 026412           35 KEVGQDRGALVEFYA----PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD----LAEKYGVSGFPTL  100 (239)
Q Consensus        35 ~~~~~~k~vlV~F~a----~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~  100 (239)
                      +.+++ .+++|+-..    |||++|++....+.+..        +.+..+|++.+++    +.+..|-..+|.+
T Consensus         3 ~~i~~-~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~--------i~y~~idv~~~~~~~~~l~~~~g~~tvP~v   67 (90)
T cd03028           3 KLIKE-NPVVLFMKGTPEEPRCGFSRKVVQILNQLG--------VDFGTFDILEDEEVRQGLKEYSNWPTFPQL   67 (90)
T ss_pred             hhhcc-CCEEEEEcCCCCCCCCcHHHHHHHHHHHcC--------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEE
Confidence            34433 345544332    79999999987776542        4466666655443    4445577789997

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=96.84  E-value=0.03  Score=39.22  Aligned_cols=91  Identities=26%  Similarity=0.374  Sum_probs=63.4

Q ss_pred             ChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeC---
Q 026412           29 TEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPK---  105 (239)
Q Consensus        29 ~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~---  105 (239)
                      +.++.++.+...+.++|-|+..--+   .....|.++|..+.  +++.|+..   .+..+...+++  .|++++|++   
T Consensus         7 s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R--~d~~F~~~---~~~~~~~~~~~--~~~ivl~~p~~~   76 (104)
T cd03069           7 TEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLR--ESFRFAHT---SDKQLLEKYGY--GEGVVLFRPPRL   76 (104)
T ss_pred             CHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhh--hcCEEEEE---ChHHHHHhcCC--CCceEEEechhh
Confidence            4566777777777777777665433   45677888888875  35677553   33567788888  688888843   


Q ss_pred             ---CCcCccccCCCCCHHHHHHHHHHh
Q 026412          106 ---GNKDGEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus       106 ---g~~~~~~~~g~~~~~~l~~~l~~~  129 (239)
                         -......|.|..+.+.|.+||...
T Consensus        77 ~~k~de~~~~y~g~~~~~~l~~fi~~~  103 (104)
T cd03069          77 SNKFEDSSVKFDGDLDSSKIKKFIREN  103 (104)
T ss_pred             hcccCcccccccCcCCHHHHHHHHHhh
Confidence               213345689988999999999753

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.

>KOG2640 consensus Thioredoxin [Function unknown]

Probab=96.82  E-value=0.00065  Score=56.02  Aligned_cols=87  Identities=21%  Similarity=0.461  Sum_probs=71.2

Q ss_pred             CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeC-ccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCC
Q 026412           40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA-DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD  118 (239)
Q Consensus        40 ~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~-~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~  118 (239)
                      ..++-..||+.|||..+..+|.+.-....+.   .+....++- ..-++...+|++.+.|++.+...  ..+.+|.|.++
T Consensus        76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~---~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~--t~~~~~~~~r~  150 (319)
T KOG2640|consen   76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFS---SIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQ--TCPASYRGERD  150 (319)
T ss_pred             CCcccccchhcccCcccccCcccchhhhhcc---ccccccHHHHhhcccchhccccccCCcceeecc--ccchhhccccc
Confidence            6679999999999999999999998887775   333333321 24467889999999999988865  47889999999


Q ss_pred             HHHHHHHHHHhhC
Q 026412          119 LEDFVSFINEKCG  131 (239)
Q Consensus       119 ~~~l~~~l~~~~~  131 (239)
                      ...++.|..+.++
T Consensus       151 l~sLv~fy~~i~~  163 (319)
T KOG2640|consen  151 LASLVNFYTEITP  163 (319)
T ss_pred             HHHHHHHHHhhcc
Confidence            9999999999886

>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=96.73  E-value=0.0082  Score=47.01  Aligned_cols=101  Identities=21%  Similarity=0.325  Sum_probs=76.9

Q ss_pred             CcEEc-ChhhHHHHhc---CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCe
Q 026412           24 DVVVL-TEDNFEKEVG---QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT   99 (239)
Q Consensus        24 ~v~~l-~~~~f~~~~~---~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt   99 (239)
                      .|.++ +.+.|-..++   +...++|..|-+.-+.|..+...+.-+|..++   .+.|+++-.. +-....+|..+++|+
T Consensus       139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP---~vKFckikss-~~gas~~F~~n~lP~  214 (273)
T KOG3171|consen  139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP---IVKFCKIKSS-NTGASDRFSLNVLPT  214 (273)
T ss_pred             eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCC---ceeEEEeeec-cccchhhhcccCCce
Confidence            45554 5678988883   34568899999999999999999999999997   6889888765 335578999999999


Q ss_pred             EEEEeCCCcCcccc-------CCCCCHHHHHHHHHHh
Q 026412          100 LKFFPKGNKDGEEY-------GGGRDLEDFVSFINEK  129 (239)
Q Consensus       100 ~~~~~~g~~~~~~~-------~g~~~~~~l~~~l~~~  129 (239)
                      +.+|++| +.+..|       .......++..|++..
T Consensus       215 LliYkgG-eLIgNFv~va~qlgedffa~dle~FL~e~  250 (273)
T KOG3171|consen  215 LLIYKGG-ELIGNFVSVAEQLGEDFFAGDLESFLNEY  250 (273)
T ss_pred             EEEeeCC-chhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence            9999887 332222       2235667777888764

>PRK10824 glutaredoxin-4; Provisional

Probab=96.58  E-value=0.01  Score=42.48  Aligned_cols=59  Identities=17%  Similarity=0.309  Sum_probs=33.8

Q ss_pred             HHHHhcCCCcEEEEEEC----CCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhH----HHHcCCCCCCeE
Q 026412           33 FEKEVGQDRGALVEFYA----PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDL----AEKYGVSGFPTL  100 (239)
Q Consensus        33 f~~~~~~~k~vlV~F~a----~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l----~~~~~i~~~Pt~  100 (239)
                      .++.+.+ .+|+|+--.    ||||+|++....+.+..        +.+..+|+++++++    .+.-|.+.+|.+
T Consensus         8 v~~~I~~-~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~--------i~~~~idi~~d~~~~~~l~~~sg~~TVPQI   74 (115)
T PRK10824          8 IQRQIAE-NPILLYMKGSPKLPSCGFSAQAVQALSACG--------ERFAYVDILQNPDIRAELPKYANWPTFPQL   74 (115)
T ss_pred             HHHHHhc-CCEEEEECCCCCCCCCchHHHHHHHHHHcC--------CCceEEEecCCHHHHHHHHHHhCCCCCCeE
Confidence            3444544 444444333    69999999988777653        22334455544433    333456678875

>PTZ00062 glutaredoxin; Provisional

Probab=96.39  E-value=0.015  Score=46.04  Aligned_cols=60  Identities=15%  Similarity=0.210  Sum_probs=36.6

Q ss_pred             HHHHhcCCCcEEEEEE----CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHH----HHcCCCCCCeEE
Q 026412           33 FEKEVGQDRGALVEFY----APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLA----EKYGVSGFPTLK  101 (239)
Q Consensus        33 f~~~~~~~k~vlV~F~----a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~----~~~~i~~~Pt~~  101 (239)
                      .++++++ .+++|+--    .||||+|++....+.+.        ++.+..+|++++++..    +..|...+|.++
T Consensus       106 v~~li~~-~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~--------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVf  173 (204)
T PTZ00062        106 IERLIRN-HKILLFMKGSKTFPFCRFSNAVVNMLNSS--------GVKYETYNIFEDPDLREELKVYSNWPTYPQLY  173 (204)
T ss_pred             HHHHHhc-CCEEEEEccCCCCCCChhHHHHHHHHHHc--------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEE
Confidence            3444444 44444433    37999999987777643        3556677877555433    334566788864

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=96.37  E-value=0.0089  Score=52.53  Aligned_cols=51  Identities=10%  Similarity=0.191  Sum_probs=36.5

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchh---HHHH---------cCCCCCCeEEE
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD---LAEK---------YGVSGFPTLKF  102 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~---l~~~---------~~i~~~Pt~~~  102 (239)
                      ++.|+.||||+|++....+.+.        ++.+..+|+++.+.   +.++         .|.+++|++++
T Consensus         4 V~vys~~~Cp~C~~aK~~L~~~--------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi   66 (410)
T PRK12759          4 VRIYTKTNCPFCDLAKSWFGAN--------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV   66 (410)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC--------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence            7789999999999987766653        46677788875553   2222         36778999855

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=96.22  E-value=0.053  Score=43.54  Aligned_cols=59  Identities=14%  Similarity=0.205  Sum_probs=47.2

Q ss_pred             CCCcEEcChhhHHHH---hcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEE
Q 026412           22 ADDVVVLTEDNFEKE---VGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL   80 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~---~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~v   80 (239)
                      .+.++.+++.+...+   ...++|++++|.+-.||+-..-.+.+.+++++|.+.-++.++.|
T Consensus        81 ns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI  142 (237)
T PF00837_consen   81 NSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYI  142 (237)
T ss_pred             CCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhH
Confidence            456888888774333   47899999999999999999999999999999975445555544

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=96.14  E-value=0.032  Score=39.13  Aligned_cols=62  Identities=18%  Similarity=0.307  Sum_probs=39.0

Q ss_pred             HHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch-hHHHH----cCCCCCCeEEE
Q 026412           33 FEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-DLAEK----YGVSGFPTLKF  102 (239)
Q Consensus        33 f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~-~l~~~----~~i~~~Pt~~~  102 (239)
                      +..++.+  .-+|.|..+||+.|.++...|..    +.  ....++.+|-+.+. ++-+.    -+-+.+|.+++
T Consensus         7 v~~~i~~--~~VVifSKs~C~~c~~~k~ll~~----~~--v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI   73 (104)
T KOG1752|consen    7 VRKMISE--NPVVIFSKSSCPYCHRAKELLSD----LG--VNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI   73 (104)
T ss_pred             HHHHhhc--CCEEEEECCcCchHHHHHHHHHh----CC--CCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE
Confidence            4444533  34667899999999998777776    32  35667788766432 33332    24557888643

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=95.89  E-value=0.12  Score=39.08  Aligned_cols=90  Identities=17%  Similarity=0.255  Sum_probs=58.9

Q ss_pred             cCCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc---------------------chhHHHHcCCC
Q 026412           38 GQDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------YKDLAEKYGVS   95 (239)
Q Consensus        38 ~~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~---------------------~~~l~~~~~i~   95 (239)
                      -.+++||++|| ..|+|-|-...-.|+....++... +..+..|..|.                     +..+++.||+.
T Consensus        28 ~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~-~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~  106 (157)
T COG1225          28 LRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL-GAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVW  106 (157)
T ss_pred             hcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhC-CCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcc
Confidence            45678999998 688999999999999988888754 56666676542                     34667777763


Q ss_pred             C------------CCeEEEEeCCCcCccccCC---CCCHHHHHHHHHH
Q 026412           96 G------------FPTLKFFPKGNKDGEEYGG---GRDLEDFVSFINE  128 (239)
Q Consensus        96 ~------------~Pt~~~~~~g~~~~~~~~g---~~~~~~l~~~l~~  128 (239)
                      .            .++.++++.+|.....+..   ...++++.+++.+
T Consensus       107 ~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~  154 (157)
T COG1225         107 GEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKK  154 (157)
T ss_pred             cccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHH
Confidence            2            3555666665554433322   2345566666554

>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides

Probab=95.55  E-value=0.19  Score=34.52  Aligned_cols=74  Identities=16%  Similarity=0.212  Sum_probs=52.1

Q ss_pred             CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCH
Q 026412           40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDL  119 (239)
Q Consensus        40 ~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~  119 (239)
                      +...++.|..+. +.|..+...++++++.-.   .+.+-..+.+.           ..|++.+..+|.....+|.|-+.-
T Consensus        19 ~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd---kI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~G   83 (94)
T cd02974          19 NPVELVASLDDS-EKSAELLELLEEIASLSD---KITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPMG   83 (94)
T ss_pred             CCEEEEEEeCCC-cchHHHHHHHHHHHHhCC---ceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecCCc
Confidence            444555666655 899999998988888743   45443322211           479999887764456899999999


Q ss_pred             HHHHHHHHH
Q 026412          120 EDFVSFINE  128 (239)
Q Consensus       120 ~~l~~~l~~  128 (239)
                      ++|..||..
T Consensus        84 hEf~Slila   92 (94)
T cd02974          84 HEFTSLVLA   92 (94)
T ss_pred             hhHHHHHHH
Confidence            999998864

AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=95.30  E-value=0.052  Score=40.98  Aligned_cols=54  Identities=15%  Similarity=0.256  Sum_probs=38.5

Q ss_pred             CCcEEEE-EECCCChHHhhH-hHHHHHHHHHccCCCCe-EEEEEeCc---cchhHHHHcCC
Q 026412           40 DRGALVE-FYAPWCGHCKNL-APTYEKVAAAFTLEDDV-VVANLDAD---KYKDLAEKYGV   94 (239)
Q Consensus        40 ~k~vlV~-F~a~wC~~C~~~-~~~~~~~a~~~~~~~~v-~~~~vd~~---~~~~l~~~~~i   94 (239)
                      ++++++. |.+.||+.|... .+.|.+..+++... ++ .++.|..|   .+...++++++
T Consensus        29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~-g~~~V~~iS~D~~~~~~~~~~~~~~   88 (155)
T cd03013          29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAK-GVDEVICVSVNDPFVMKAWGKALGA   88 (155)
T ss_pred             CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHC-CCCEEEEEECCCHHHHHHHHHhhCC
Confidence            3444444 558999999998 99999999988754 34 46677666   34456667766

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.24  E-value=0.2  Score=40.63  Aligned_cols=28  Identities=29%  Similarity=0.443  Sum_probs=22.0

Q ss_pred             CcEEEEEECCCChHHhhHhHHHHHHHHH
Q 026412           41 RGALVEFYAPWCGHCKNLAPTYEKVAAA   68 (239)
Q Consensus        41 k~vlV~F~a~wC~~C~~~~~~~~~~a~~   68 (239)
                      +..++.|....||+|++..|.+.+....
T Consensus        85 ~v~v~~f~d~~Cp~C~~~~~~l~~~~i~  112 (244)
T COG1651          85 PVTVVEFFDYTCPYCKEAFPELKKKYID  112 (244)
T ss_pred             CceEEEEecCcCccHHHHHHHHHHHhhh
Confidence            6788889999999998888777774443

>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []

Probab=94.82  E-value=0.39  Score=37.11  Aligned_cols=27  Identities=22%  Similarity=0.481  Sum_probs=24.6

Q ss_pred             EEEEEECCCChHHhhHhHHHHHHHHHc
Q 026412           43 ALVEFYAPWCGHCKNLAPTYEKVAAAF   69 (239)
Q Consensus        43 vlV~F~a~wC~~C~~~~~~~~~~a~~~   69 (239)
                      .+..|+.+-||+|-...+.+.++.+.+
T Consensus         1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~   27 (193)
T PF01323_consen    1 TIEFFFDFICPWCYLASPRLRKLRAEY   27 (193)
T ss_dssp             EEEEEEBTTBHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence            367899999999999999999999988

The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=94.54  E-value=0.21  Score=45.30  Aligned_cols=83  Identities=14%  Similarity=0.131  Sum_probs=59.5

Q ss_pred             CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCH
Q 026412           40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDL  119 (239)
Q Consensus        40 ~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~  119 (239)
                      .++|-+.++.+.|+.|.++...++++++.-.   .+.+-..+.+           ...|++.+..+|.....+|.|-+.-
T Consensus        18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~---~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i~f~g~P~g   83 (517)
T PRK15317         18 ERPIELVASLDDSEKSAELKELLEEIASLSD---KITVEEDSLD-----------VRKPSFSITRPGEDTGVRFAGIPMG   83 (517)
T ss_pred             CCCEEEEEEeCCCchHHHHHHHHHHHHHhCC---ceEEEEccCC-----------CCCCEEEEEcCCccceEEEEecCcc
Confidence            4455555555589999999999999988753   4554332211           3489998887665566899999999


Q ss_pred             HHHHHHHHHhhCCCCCC
Q 026412          120 EDFVSFINEKCGTSRDG  136 (239)
Q Consensus       120 ~~l~~~l~~~~~~~~~~  136 (239)
                      ++|..||......+...
T Consensus        84 ~Ef~s~i~~i~~~~~~~  100 (517)
T PRK15317         84 HEFTSLVLALLQVGGHP  100 (517)
T ss_pred             HHHHHHHHHHHHhcCCC
Confidence            99999998876654443

>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2

Probab=94.31  E-value=0.25  Score=32.11  Aligned_cols=76  Identities=13%  Similarity=0.186  Sum_probs=42.3

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHH
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFV  123 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~  123 (239)
                      +..|+.++|++|++.+-.+....-.      +....+|.....++ ..-+...+|++..-..|+.. .    -.....+.
T Consensus         2 i~Ly~~~~~p~c~kv~~~L~~~gi~------y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~-~----l~eS~~I~   69 (77)
T cd03040           2 ITLYQYKTCPFCCKVRAFLDYHGIP------YEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQ-Q----LVDSSVII   69 (77)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCc------eEEEECCchhHHHH-HHhCCCccCEEEECCCCCcc-E----EEcHHHHH
Confidence            4568889999999987555433221      23333443222333 33345579987543221111 1    23677888


Q ss_pred             HHHHHhhC
Q 026412          124 SFINEKCG  131 (239)
Q Consensus       124 ~~l~~~~~  131 (239)
                      +||.+.+|
T Consensus        70 ~yL~~~~~   77 (77)
T cd03040          70 STLKTYLG   77 (77)
T ss_pred             HHHHHHcC
Confidence            88887654

Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=94.14  E-value=0.21  Score=37.35  Aligned_cols=50  Identities=20%  Similarity=0.304  Sum_probs=33.9

Q ss_pred             EEEEECC------CChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch----hHHHHcCC----CCCCeEE
Q 026412           44 LVEFYAP------WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGV----SGFPTLK  101 (239)
Q Consensus        44 lV~F~a~------wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~----~l~~~~~i----~~~Pt~~  101 (239)
                      +|.|+++      +|++|++....|+..        .+.+-.+|++.++    ++.+.++-    ..+|.++
T Consensus         2 VvlYttsl~giR~t~~~C~~ak~iL~~~--------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVF   65 (147)
T cd03031           2 VVLYTTSLRGVRKTFEDCNNVRAILESF--------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVF   65 (147)
T ss_pred             EEEEEcCCcCCCCcChhHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEE
Confidence            4566677      899999988777643        3667778887554    34444454    5688864

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>COG3019 Predicted metal-binding protein [General function prediction only]

Probab=94.13  E-value=1.1  Score=32.99  Aligned_cols=75  Identities=23%  Similarity=0.399  Sum_probs=53.8

Q ss_pred             cEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCC----CCCeEEEEeCCCcCccccCCCC
Q 026412           42 GALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS----GFPTLKFFPKGNKDGEEYGGGR  117 (239)
Q Consensus        42 ~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~----~~Pt~~~~~~g~~~~~~~~g~~  117 (239)
                      .-++.+++|.|+=|..-...++    .    ..+.+-.+..++...+-++++|.    +=-|.+ + +|    ....|..
T Consensus        26 ~~~~vyksPnCGCC~~w~~~mk----~----~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~V-I-~G----y~vEGHV   91 (149)
T COG3019          26 TEMVVYKSPNCGCCDEWAQHMK----A----NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAV-I-NG----YYVEGHV   91 (149)
T ss_pred             eeEEEEeCCCCccHHHHHHHHH----h----CCcEEEEeecCcHHHHHHhcCCChhhccccEEE-E-cC----EEEeccC
Confidence            4578899999999988655544    2    25777777777777888889886    233332 2 33    3457899


Q ss_pred             CHHHHHHHHHHhh
Q 026412          118 DLEDFVSFINEKC  130 (239)
Q Consensus       118 ~~~~l~~~l~~~~  130 (239)
                      ..+++..++++.-
T Consensus        92 Pa~aI~~ll~~~p  104 (149)
T COG3019          92 PAEAIARLLAEKP  104 (149)
T ss_pred             CHHHHHHHHhCCC
Confidence            9999999998754

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=93.72  E-value=0.44  Score=43.25  Aligned_cols=84  Identities=15%  Similarity=0.220  Sum_probs=59.1

Q ss_pred             CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCH
Q 026412           40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDL  119 (239)
Q Consensus        40 ~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~  119 (239)
                      .++|-+.++.+.|+.|.++...++++++.-.   .+.+...+.+          ....|++.+..+|.....+|.|-+.-
T Consensus        18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~---ki~~~~~~~~----------~~~~p~~~~~~~~~~~~i~f~g~P~g   84 (515)
T TIGR03140        18 ENPVTLVLSAGSHEKSKELLELLDEIASLSD---KISLTQNTAD----------TLRKPSFTILRDGADTGIRFAGIPGG   84 (515)
T ss_pred             CCCEEEEEEeCCCchhHHHHHHHHHHHHhCC---CeEEEEecCC----------cCCCCeEEEecCCcccceEEEecCCc
Confidence            3455444444479999999999999988743   4555333322          13569998886665566899999999


Q ss_pred             HHHHHHHHHhhCCCCCC
Q 026412          120 EDFVSFINEKCGTSRDG  136 (239)
Q Consensus       120 ~~l~~~l~~~~~~~~~~  136 (239)
                      ++|..||......+...
T Consensus        85 ~Ef~s~i~~i~~~~~~~  101 (515)
T TIGR03140        85 HEFTSLVLAILQVGGHG  101 (515)
T ss_pred             HHHHHHHHHHHHhcCCC
Confidence            99999998877655443

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=93.34  E-value=1.9  Score=30.17  Aligned_cols=103  Identities=17%  Similarity=0.186  Sum_probs=74.3

Q ss_pred             EcChhhHHHHh--cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHH----HHcCCC-CCCe
Q 026412           27 VLTEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLA----EKYGVS-GFPT   99 (239)
Q Consensus        27 ~l~~~~f~~~~--~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~----~~~~i~-~~Pt   99 (239)
                      .+...++-+.=  .-....+|.|--+--+.-.++.+.+.++|+.+..++++.++-||-|+-+-+.    +-|+|. .-|.
T Consensus         5 kl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~Pq   84 (120)
T cd03074           5 KLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQ   84 (120)
T ss_pred             hccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCc
Confidence            34455544443  3346788888889999999999999999999998899999999999766443    345666 4698


Q ss_pred             EEEEeCCCcCcc--ccCC---CCCHHHHHHHHHHh
Q 026412          100 LKFFPKGNKDGE--EYGG---GRDLEDFVSFINEK  129 (239)
Q Consensus       100 ~~~~~~g~~~~~--~~~g---~~~~~~l~~~l~~~  129 (239)
                      +-+..-.....+  ...+   ..+++++..||...
T Consensus        85 IGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedV  119 (120)
T cd03074          85 IGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDV  119 (120)
T ss_pred             eeeEecccccceeEecccccccCcHHHHHHHHHhh
Confidence            888764433222  2222   37899999999763

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin

>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx

Probab=92.92  E-value=0.16  Score=35.48  Aligned_cols=79  Identities=14%  Similarity=0.150  Sum_probs=43.7

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc----hhHHHHcCCCCCCeEEEEeCCCcCcccc----CC
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY----KDLAEKYGVSGFPTLKFFPKGNKDGEEY----GG  115 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~Pt~~~~~~g~~~~~~~----~g  115 (239)
                      +..|+.|+|+.|++....+++.        ++.+-.+|+.++    .++.+-.+-.+.+.--++...+......    ..
T Consensus         1 i~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~   72 (105)
T cd02977           1 ITIYGNPNCSTSRKALAWLEEH--------GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKD   72 (105)
T ss_pred             CEEEECCCCHHHHHHHHHHHHc--------CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCcccc
Confidence            3578899999999987666542        344556665432    2333333333333333444332211111    23


Q ss_pred             CCCHHHHHHHHHHhh
Q 026412          116 GRDLEDFVSFINEKC  130 (239)
Q Consensus       116 ~~~~~~l~~~l~~~~  130 (239)
                      ..+.+++.++|.+.-
T Consensus        73 ~ls~~e~~~~l~~~p   87 (105)
T cd02977          73 ELSDEEALELMAEHP   87 (105)
T ss_pred             CCCHHHHHHHHHhCc
Confidence            567888888887653

ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.

>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=92.69  E-value=2.5  Score=29.66  Aligned_cols=91  Identities=13%  Similarity=0.128  Sum_probs=57.7

Q ss_pred             ChhhHHHHhcCC-CcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCC-
Q 026412           29 TEDNFEKEVGQD-RGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG-  106 (239)
Q Consensus        29 ~~~~f~~~~~~~-k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g-  106 (239)
                      +.++.+..+... +.++|-|+..--+   .....+.++|..+.  +++.|+...   +..+..++++. .|.+++|++. 
T Consensus         7 s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~R--dd~~F~~t~---~~~~~~~~~~~-~~~vvl~rp~~   77 (107)
T cd03068           7 TLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLR--EDYKFHHTF---DSEIFKSLKVS-PGQLVVFQPEK   77 (107)
T ss_pred             CHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcc--cCCEEEEEC---hHHHHHhcCCC-CCceEEECcHH
Confidence            456677777554 6666666655433   35667888998875  356775433   34677888886 5777777433 


Q ss_pred             -----CcCccccCCC-CCHHH-HHHHHHH
Q 026412          107 -----NKDGEEYGGG-RDLED-FVSFINE  128 (239)
Q Consensus       107 -----~~~~~~~~g~-~~~~~-l~~~l~~  128 (239)
                           ......|.|. .+.++ |.+||+.
T Consensus        78 ~~~k~e~~~~~~~~~~~~~~~~~~~f~~~  106 (107)
T cd03068          78 FQSKYEPKSHVLNKKDSTSEDELKDFFKE  106 (107)
T ss_pred             HhhhcCcceeeeeccccchHHHHHHHHhc
Confidence                 1224566766 45555 9999874

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.

>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs

Probab=92.33  E-value=0.4  Score=30.64  Aligned_cols=51  Identities=8%  Similarity=0.066  Sum_probs=32.3

Q ss_pred             EEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-chhHHHHcCCCCCCeEE
Q 026412           45 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-YKDLAEKYGVSGFPTLK  101 (239)
Q Consensus        45 V~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-~~~l~~~~~i~~~Pt~~  101 (239)
                      +.|+.+||++|.+..-.+....-      .+.+..+|... .+++.+......+|++.
T Consensus         2 ~ly~~~~~p~~~rv~~~L~~~gl------~~e~~~v~~~~~~~~~~~~np~~~vP~L~   53 (71)
T cd03060           2 ILYSFRRCPYAMRARMALLLAGI------TVELREVELKNKPAEMLAASPKGTVPVLV   53 (71)
T ss_pred             EEEecCCCcHHHHHHHHHHHcCC------CcEEEEeCCCCCCHHHHHHCCCCCCCEEE
Confidence            46788999999998655553322      34555666543 34555555666799974

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r

>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]

Probab=92.10  E-value=1.3  Score=38.49  Aligned_cols=90  Identities=12%  Similarity=0.103  Sum_probs=65.7

Q ss_pred             cCCCcEEEEEECCCChHHhhHh--HHHHHHHHHccCCCCeEEEEEeCc--cchhHHHHcCCCCCCeEEEEeCCCcCcccc
Q 026412           38 GQDRGALVEFYAPWCGHCKNLA--PTYEKVAAAFTLEDDVVVANLDAD--KYKDLAEKYGVSGFPTLKFFPKGNKDGEEY  113 (239)
Q Consensus        38 ~~~k~vlV~F~a~wC~~C~~~~--~~~~~~a~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~  113 (239)
                      ..++.+||.|-+........|.  -.+.......- ...++-++|+..  ....++.-|.+-.+|+++++...|......
T Consensus        16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~l-s~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevi   94 (506)
T KOG2507|consen   16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSL-SKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVI   94 (506)
T ss_pred             hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhh-hcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEe
Confidence            5677888888888877777776  33444333322 235777777765  345677888999999999998877888888


Q ss_pred             CCCCCHHHHHHHHHH
Q 026412          114 GGGRDLEDFVSFINE  128 (239)
Q Consensus       114 ~g~~~~~~l~~~l~~  128 (239)
                      .|..++++|..-|.+
T Consensus        95 tg~v~adeL~~~i~K  109 (506)
T KOG2507|consen   95 TGFVTADELASSIEK  109 (506)
T ss_pred             eccccHHHHHHHHHH
Confidence            999999888876654

>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]

Probab=91.77  E-value=5.4  Score=31.54  Aligned_cols=93  Identities=17%  Similarity=0.130  Sum_probs=57.0

Q ss_pred             CChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHc-CCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHh
Q 026412           51 WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKY-GVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus        51 wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~-~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~  129 (239)
                      .|+.|+++.-.+.   ..   ...+.+..||...-++-.... .-...|. +.|++        .+..+.+.+.++|.+.
T Consensus        20 dcpf~qr~~m~L~---~k---~~~f~vttVd~~~kp~~f~~~sp~~~~P~-l~~d~--------~~~tDs~~Ie~~Lee~   84 (221)
T KOG1422|consen   20 DCPFCQRLFMTLE---LK---GVPFKVTTVDLSRKPEWFLDISPGGKPPV-LKFDE--------KWVTDSDKIEEFLEEK   84 (221)
T ss_pred             CChhHHHHHHHHH---Hc---CCCceEEEeecCCCcHHHHhhCCCCCCCe-EEeCC--------ceeccHHHHHHHHHHh
Confidence            3999998866655   22   125778888988665544443 3334454 44432        2345788999999999


Q ss_pred             hCCCCCCCCCcccccchhhhhhHHHHHHH
Q 026412          130 CGTSRDGKGQLTSTAGIVASLDALVKEFV  158 (239)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  158 (239)
                      +++.+-........+.....+-.....|+
T Consensus        85 l~~p~~~~~~~~E~asag~diF~kF~~fi  113 (221)
T KOG1422|consen   85 LPPPKLPTLAPPESASAGSDIFAKFSAFI  113 (221)
T ss_pred             cCCCCCcccCCHHHHhhHHHHHHHHHHHH
Confidence            88777665544444444444445555664

>PHA03075 glutaredoxin-like protein; Provisional

Probab=91.52  E-value=0.34  Score=34.27  Aligned_cols=30  Identities=17%  Similarity=0.584  Sum_probs=26.1

Q ss_pred             CcEEEEEECCCChHHhhHhHHHHHHHHHcc
Q 026412           41 RGALVEFYAPWCGHCKNLAPTYEKVAAAFT   70 (239)
Q Consensus        41 k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~   70 (239)
                      |.+++.|..|.|+-|+-....+.++..+|.
T Consensus         2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~   31 (123)
T PHA03075          2 KKTLILFGKPLCSVCESISEALKELEDEYD   31 (123)
T ss_pred             CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence            578999999999999999999987777663

>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA

Probab=91.29  E-value=1  Score=29.25  Aligned_cols=60  Identities=17%  Similarity=0.138  Sum_probs=48.2

Q ss_pred             EEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEE
Q 026412           43 ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF  103 (239)
Q Consensus        43 vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~  103 (239)
                      .+..|-+..-+..++....+.++-+.+. .+.+.+--||+.+++++++.++|-.+||++=.
T Consensus         3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l-~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~   62 (72)
T cd02978           3 VLRLYVAGRTPKSERALQNLKRILEELL-GGPYELEVIDVLKQPQLAEEDKIVATPTLVKV   62 (72)
T ss_pred             EEEEEECCCCchHHHHHHHHHHHHHHhc-CCcEEEEEEEcccCHhHHhhCCEEEechhhhc
Confidence            3455556666888888888888888775 56788888999999999999999999997543

KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor

>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins

Probab=89.66  E-value=1.1  Score=29.14  Aligned_cols=71  Identities=17%  Similarity=0.156  Sum_probs=38.8

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc----hhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCH
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY----KDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDL  119 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~  119 (239)
                      +..++.++|++|.+..-.+.+..        +.+-.++++..    +++.+.-+-..+|++.. .+|+.  .    -...
T Consensus         2 ~~Ly~~~~sp~~~kv~~~L~~~g--------i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~-~~~~~--~----l~es   66 (77)
T cd03041           2 LELYEFEGSPFCRLVREVLTELE--------LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVD-PNTGV--Q----MFES   66 (77)
T ss_pred             ceEecCCCCchHHHHHHHHHHcC--------CcEEEEECCCChHHHHHHHHhCCCCcccEEEe-CCCCe--E----EEcH
Confidence            34677789999999865555432        22323344322    23433334457898743 22221  1    2356


Q ss_pred             HHHHHHHHHh
Q 026412          120 EDFVSFINEK  129 (239)
Q Consensus       120 ~~l~~~l~~~  129 (239)
                      ..+.+|+.+.
T Consensus        67 ~~I~~yL~~~   76 (77)
T cd03041          67 ADIVKYLFKT   76 (77)
T ss_pred             HHHHHHHHHh
Confidence            7788887653

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=89.29  E-value=0.84  Score=35.11  Aligned_cols=59  Identities=15%  Similarity=0.171  Sum_probs=39.8

Q ss_pred             cEEcChhhHHHHhcCCCcEEEEEECCCC-hHHhhHhHHHHHHHHHccCC-CCeEEEEEeCc
Q 026412           25 VVVLTEDNFEKEVGQDRGALVEFYAPWC-GHCKNLAPTYEKVAAAFTLE-DDVVVANLDAD   83 (239)
Q Consensus        25 v~~l~~~~f~~~~~~~k~vlV~F~a~wC-~~C~~~~~~~~~~a~~~~~~-~~v~~~~vd~~   83 (239)
                      +.+.++..|...--.+|+++|.|.=+.| ..|-.....+.++.+.+..+ .++.++.|.+|
T Consensus        37 L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD   97 (174)
T PF02630_consen   37 LTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD   97 (174)
T ss_dssp             EEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred             EEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence            3444455555433468999999988888 67888888888887776543 35767666665

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC

Probab=88.95  E-value=1.7  Score=31.81  Aligned_cols=22  Identities=9%  Similarity=0.347  Sum_probs=20.0

Q ss_pred             chhHHHHcCCCCCCeEEEEeCC
Q 026412           85 YKDLAEKYGVSGFPTLKFFPKG  106 (239)
Q Consensus        85 ~~~l~~~~~i~~~Pt~~~~~~g  106 (239)
                      +|.+.++|+|+.+|++++.+++
T Consensus        60 dP~lF~~f~I~~VPa~V~~~~~   81 (130)
T TIGR02742        60 DPQWFKQFDITAVPAFVVVKDG   81 (130)
T ss_pred             ChHHHhhcCceEcCEEEEECCC
Confidence            5899999999999999998776

This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.

>PF13778 DUF4174: Domain of unknown function (DUF4174)

Probab=88.82  E-value=6.9  Score=28.00  Aligned_cols=90  Identities=12%  Similarity=0.043  Sum_probs=54.7

Q ss_pred             cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeC-ccc-----------hhHHHHcCCCC-CCeEEEEe
Q 026412           38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA-DKY-----------KDLAEKYGVSG-FPTLKFFP  104 (239)
Q Consensus        38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~-~~~-----------~~l~~~~~i~~-~Pt~~~~~  104 (239)
                      .++++++|.--++.-+.-+.....+.+-...+.. .++.+..+-- ...           ..+.++|++.. .-++++..
T Consensus         8 w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~e-Rdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~vLiG   86 (118)
T PF13778_consen    8 WKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDE-RDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTVVLIG   86 (118)
T ss_pred             CcCceEEEECCCCCCHHHHHHHHHHHhhhhcccc-CceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEEEEEe
Confidence            3444444433345566666667777765555553 3566655522 222           27888998652 23444554


Q ss_pred             CCCcCccccCCCCCHHHHHHHHHH
Q 026412          105 KGNKDGEEYGGGRDLEDFVSFINE  128 (239)
Q Consensus       105 ~g~~~~~~~~g~~~~~~l~~~l~~  128 (239)
                      ++|....++.++.+.+++-..|..
T Consensus        87 KDG~vK~r~~~p~~~~~lf~~ID~  110 (118)
T PF13778_consen   87 KDGGVKLRWPEPIDPEELFDTIDA  110 (118)
T ss_pred             CCCcEEEecCCCCCHHHHHHHHhC
Confidence            444666778999999999998864

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=88.53  E-value=5.2  Score=31.70  Aligned_cols=76  Identities=18%  Similarity=0.180  Sum_probs=47.8

Q ss_pred             cChhhHHHHhcCCCcEEEEEECCCCh-HHhhHhHHHHHHHHHcc-C-CCCeEEEEEeCc---cchhHHHHcCC-CCCCeE
Q 026412           28 LTEDNFEKEVGQDRGALVEFYAPWCG-HCKNLAPTYEKVAAAFT-L-EDDVVVANLDAD---KYKDLAEKYGV-SGFPTL  100 (239)
Q Consensus        28 l~~~~f~~~~~~~k~vlV~F~a~wC~-~C~~~~~~~~~~a~~~~-~-~~~v~~~~vd~~---~~~~l~~~~~i-~~~Pt~  100 (239)
                      .+++.|...--.+++++|.|.=+.|| -|-.....+..+.+++. . ..++.++.|-+|   +-++..++|.. ...|.+
T Consensus        55 ~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~  134 (207)
T COG1999          55 QDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRW  134 (207)
T ss_pred             CCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCe
Confidence            33444444445788999999867764 57777777777777665 2 235655555554   44677777777 445554


Q ss_pred             EEE
Q 026412          101 KFF  103 (239)
Q Consensus       101 ~~~  103 (239)
                      ...
T Consensus       135 ~~l  137 (207)
T COG1999         135 IGL  137 (207)
T ss_pred             eee
Confidence            443

>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=88.51  E-value=1.2  Score=29.04  Aligned_cols=21  Identities=19%  Similarity=0.368  Sum_probs=17.5

Q ss_pred             EEEECCCChHHhhHhHHHHHH
Q 026412           45 VEFYAPWCGHCKNLAPTYEKV   65 (239)
Q Consensus        45 V~F~a~wC~~C~~~~~~~~~~   65 (239)
                      +.|++..||.|..+..+++++
T Consensus         5 ~lfgsn~Cpdca~a~eyl~rl   25 (85)
T COG4545           5 KLFGSNLCPDCAPAVEYLERL   25 (85)
T ss_pred             eeeccccCcchHHHHHHHHHc
Confidence            789999999998887776655

>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family

Probab=88.38  E-value=1  Score=32.12  Aligned_cols=75  Identities=11%  Similarity=0.059  Sum_probs=41.2

Q ss_pred             EEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch-------hHHHHcCCCCCCeEEEEeCCCcCcccc----
Q 026412           45 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-------DLAEKYGVSGFPTLKFFPKGNKDGEEY----  113 (239)
Q Consensus        45 V~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~-------~l~~~~~i~~~Pt~~~~~~g~~~~~~~----  113 (239)
                      ..|+.++|+.|++....+++-        ++.+-.+|+.+.+       ++.+..|.   ..--++...+......    
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~el~~l~~~~~~---~~~~lin~~~~~~k~l~~~~   70 (117)
T TIGR01617         2 KVYGSPNCTTCKKARRWLEAN--------GIEYQFIDIGEDGPTREELLDILSLLED---GIDPLLNTRGQSYRALNTSN   70 (117)
T ss_pred             EEEeCCCCHHHHHHHHHHHHc--------CCceEEEecCCChhhHHHHHHHHHHcCC---CHHHheeCCCcchhhCCchh
Confidence            468899999999987666641        4556667765433       33344442   1112343332221111    


Q ss_pred             -CCCCCHHHHHHHHHHhh
Q 026412          114 -GGGRDLEDFVSFINEKC  130 (239)
Q Consensus       114 -~g~~~~~~l~~~l~~~~  130 (239)
                       ....+.+++.+++.+.-
T Consensus        71 ~~~~ls~~e~~~~i~~~p   88 (117)
T TIGR01617        71 TFLDLSDKEALELLAEDP   88 (117)
T ss_pred             hcccCCHHHHHHHHHhCc
Confidence             12456677777776643

This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.

>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function

Probab=87.98  E-value=3  Score=34.00  Aligned_cols=34  Identities=9%  Similarity=0.034  Sum_probs=25.9

Q ss_pred             hcCCCcEEEEEECCCChHHhhHhHHHHHHHHHcc
Q 026412           37 VGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFT   70 (239)
Q Consensus        37 ~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~   70 (239)
                      ...+|+.+++..+.|||.|...+=.+-....+|.
T Consensus        55 ~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfG   88 (249)
T PF06053_consen   55 APNGKPEVIFIGWEGCPYCAAESWALYIALSRFG   88 (249)
T ss_pred             CCCCeeEEEEEecccCccchhhHHHHHHHHHhcC
Confidence            3678999999999999999987644444445554

>PRK01655 spxA transcriptional regulator Spx; Reviewed

Probab=87.51  E-value=1.1  Score=32.72  Aligned_cols=34  Identities=18%  Similarity=0.327  Sum_probs=23.0

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY   85 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~   85 (239)
                      +..|+.|||+.|++....+++-        ++.+-.+|+.+.
T Consensus         2 i~iY~~~~C~~C~ka~~~L~~~--------gi~~~~idi~~~   35 (131)
T PRK01655          2 VTLFTSPSCTSCRKAKAWLEEH--------DIPFTERNIFSS   35 (131)
T ss_pred             EEEEeCCCChHHHHHHHHHHHc--------CCCcEEeeccCC
Confidence            4578899999999976555432        355666666533

>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=87.46  E-value=1  Score=27.70  Aligned_cols=52  Identities=12%  Similarity=0.117  Sum_probs=31.3

Q ss_pred             EEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch--hHHHHcCCCCCCeEEE
Q 026412           45 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK--DLAEKYGVSGFPTLKF  102 (239)
Q Consensus        45 V~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~--~l~~~~~i~~~Pt~~~  102 (239)
                      ..|+.++|+.|.+..-.+....-      .+....++.....  ++.+..+...+|++..
T Consensus         2 ~ly~~~~~~~~~~~~~~l~~~~i------~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~   55 (71)
T cd00570           2 KLYYFPGSPRSLRVRLALEEKGL------PYELVPVDLGEGEQEEFLALNPLGKVPVLED   55 (71)
T ss_pred             EEEeCCCCccHHHHHHHHHHcCC------CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence            35788999999988766654422      2444455543222  2444556667898643

In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma

>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E

Probab=87.44  E-value=0.99  Score=28.69  Aligned_cols=51  Identities=16%  Similarity=0.131  Sum_probs=28.2

Q ss_pred             EEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE
Q 026412           45 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  101 (239)
Q Consensus        45 V~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  101 (239)
                      ..++.++|++|++.+-.+....-      .+....++........+..+-..+|++.
T Consensus         2 ~Ly~~~~~p~~~rvr~~L~~~gl------~~~~~~~~~~~~~~~~~~~~~~~vP~L~   52 (71)
T cd03037           2 KLYIYEHCPFCVKARMIAGLKNI------PVEQIILQNDDEATPIRMIGAKQVPILE   52 (71)
T ss_pred             ceEecCCCcHhHHHHHHHHHcCC------CeEEEECCCCchHHHHHhcCCCccCEEE
Confidence            35778999999988765554322      2333344433322223333444688863

coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.

>TIGR02654 circ_KaiB circadian clock protein KaiB

Probab=87.28  E-value=3.1  Score=28.06  Aligned_cols=74  Identities=16%  Similarity=0.015  Sum_probs=55.2

Q ss_pred             CcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCC
Q 026412           41 RGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGR  117 (239)
Q Consensus        41 k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~  117 (239)
                      .+++=.|.+..-+.+++....+.++-+.+-. +.+.+--||+.+++++++.++|-.+||++=..+.  ...+..|..
T Consensus         3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~-g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~--P~rriiGdl   76 (87)
T TIGR02654         3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQ-GVYALKVIDVLKNPQLAEEDKILATPTLSKILPP--PVRKIIGDL   76 (87)
T ss_pred             eEEEEEEEeCCCchHHHHHHHHHHHHHHhcC-CceEEEEEEcccCHhHHhHCCEEEecHHhhcCCC--Ccceeeccc
Confidence            4566677788888888888888888776543 3477878899999999999999999997544333  334555653

Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.

>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S

Probab=87.21  E-value=1.5  Score=27.74  Aligned_cols=52  Identities=13%  Similarity=0.197  Sum_probs=31.7

Q ss_pred             EEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc----cchhHHHHcCCCCCCeEEE
Q 026412           45 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD----KYKDLAEKYGVSGFPTLKF  102 (239)
Q Consensus        45 V~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~----~~~~l~~~~~i~~~Pt~~~  102 (239)
                      ..|+.++|++|++..-.+....-      .+....++..    ..+++.+......+|++..
T Consensus         2 ~Ly~~~~s~~~~~~~~~L~~~~l------~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~   57 (74)
T cd03051           2 KLYDSPTAPNPRRVRIFLAEKGI------DVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL   57 (74)
T ss_pred             EEEeCCCCcchHHHHHHHHHcCC------CceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence            46788999999998776654422      2334445432    1234555555567899754

cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.

>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC

Probab=86.22  E-value=0.73  Score=32.30  Aligned_cols=20  Identities=15%  Similarity=0.154  Sum_probs=15.9

Q ss_pred             EEEEECCCChHHhhHhHHHH
Q 026412           44 LVEFYAPWCGHCKNLAPTYE   63 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~   63 (239)
                      +..|+.|||+.|++....++
T Consensus         1 i~iy~~~~C~~crka~~~L~   20 (105)
T cd03035           1 ITLYGIKNCDTVKKARKWLE   20 (105)
T ss_pred             CEEEeCCCCHHHHHHHHHHH
Confidence            35788999999999766555

The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.

>PRK09301 circadian clock protein KaiB; Provisional

Probab=85.91  E-value=3.9  Score=28.48  Aligned_cols=75  Identities=16%  Similarity=0.008  Sum_probs=56.9

Q ss_pred             CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCC
Q 026412           40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGR  117 (239)
Q Consensus        40 ~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~  117 (239)
                      ..+++-.|.+..-+..++....+.++-+.+.. +.+.+=-||+.+++++++.++|-.+||++=.-+.  ...+..|..
T Consensus         5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~-g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~--P~rriiGDl   79 (103)
T PRK09301          5 KTYILKLYVAGNTPNSVRALKTLKNILETEFK-GVYALKVIDVLKNPQLAEEDKILATPTLAKILPP--PVRKIIGDL   79 (103)
T ss_pred             ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcC-CceEEEEEEcccCHhHHhHCCeEEecHHhhcCCC--Ccceeeccc
Confidence            45677778888888888888888888776543 3477878899999999999999999997544333  334556653

>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]

Probab=85.68  E-value=2.2  Score=30.28  Aligned_cols=45  Identities=13%  Similarity=0.326  Sum_probs=30.0

Q ss_pred             hHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeC
Q 026412           57 NLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPK  105 (239)
Q Consensus        57 ~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~  105 (239)
                      .+.+.+..+.+.....+..  ..|.+  ++.+.++|+|+.+|++++-++
T Consensus        36 ~~~~t~~~~~~l~~~~~~~--~~v~I--dP~~F~~y~I~~VPa~V~~~~   80 (113)
T PF09673_consen   36 SFKPTAKAIQELLRKDDPC--PGVQI--DPRLFRQYNITAVPAFVVVKD   80 (113)
T ss_pred             CHHHHHHHHHHHhhccCCC--cceeE--ChhHHhhCCceEcCEEEEEcC
Confidence            5566666555555433222  23333  588999999999999988876

The N-terminal portion of these proteins is heterogeneous.

>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E

Probab=85.40  E-value=1.9  Score=27.35  Aligned_cols=69  Identities=17%  Similarity=0.176  Sum_probs=39.5

Q ss_pred             EEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc-hhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHH
Q 026412           45 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-KDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFV  123 (239)
Q Consensus        45 V~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~-~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~  123 (239)
                      ..|+.++|++|++..-.+....-      ++....+|.... +++.+......+|++.  .+| ..      -.....+.
T Consensus         2 ~ly~~~~~~~~~~v~~~l~~~gi------~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~-~~------l~es~aI~   66 (73)
T cd03059           2 TLYSGPDDVYSHRVRIVLAEKGV------SVEIIDVDPDNPPEDLAELNPYGTVPTLV--DRD-LV------LYESRIIM   66 (73)
T ss_pred             EEEECCCChhHHHHHHHHHHcCC------ccEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECC-EE------EEcHHHHH
Confidence            46788999999998765543322      233444554432 3444444555789763  232 11      23556677


Q ss_pred             HHHHH
Q 026412          124 SFINE  128 (239)
Q Consensus       124 ~~l~~  128 (239)
                      .|+.+
T Consensus        67 ~yL~~   71 (73)
T cd03059          67 EYLDE   71 (73)
T ss_pred             HHHHh
Confidence            77654

coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.

>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A

Probab=84.73  E-value=4.8  Score=25.85  Aligned_cols=71  Identities=11%  Similarity=0.178  Sum_probs=45.6

Q ss_pred             EEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-chhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHH
Q 026412           46 EFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVS  124 (239)
Q Consensus        46 ~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~  124 (239)
                      .++.++|++|++..-.++...-      .+.+..++..+ ...+.....-..+|++.  .+| ..   .   .+...+.+
T Consensus         1 Ly~~~~Sp~~~kv~~~l~~~~i------~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g-~~---l---~dS~~I~~   65 (75)
T PF13417_consen    1 LYGFPGSPYSQKVRLALEEKGI------PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDG-EV---L---TDSAAIIE   65 (75)
T ss_dssp             EEEETTSHHHHHHHHHHHHHTE------EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETT-EE---E---ESHHHHHH
T ss_pred             CCCcCCChHHHHHHHHHHHcCC------eEEEeccCcccchhHHHhhcccccceEEE--ECC-EE---E---eCHHHHHH
Confidence            3678999999998755543321      24555666544 34555566666799985  444 21   1   26788999


Q ss_pred             HHHHhhC
Q 026412          125 FINEKCG  131 (239)
Q Consensus       125 ~l~~~~~  131 (239)
                      ||.++.+
T Consensus        66 yL~~~~~   72 (75)
T PF13417_consen   66 YLEERYP   72 (75)
T ss_dssp             HHHHHST
T ss_pred             HHHHHcC
Confidence            9988764

...

>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC

Probab=84.55  E-value=0.98  Score=31.94  Aligned_cols=77  Identities=19%  Similarity=0.287  Sum_probs=41.1

Q ss_pred             EEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch----hHHHHcCCCCCCeEEEEeCCCcCccc--cC---C
Q 026412           45 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVSGFPTLKFFPKGNKDGEE--YG---G  115 (239)
Q Consensus        45 V~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~----~l~~~~~i~~~Pt~~~~~~g~~~~~~--~~---g  115 (239)
                      ..|+.|+|+.|++....+++-        ++.+-.+|+..++    ++..-.+..+.|.--+++..++....  ..   .
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~   73 (111)
T cd03036           2 KFYEYPKCSTCRKAKKWLDEH--------GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLKDKLP   73 (111)
T ss_pred             EEEECCCCHHHHHHHHHHHHc--------CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHHhCCcccccc
Confidence            468899999999987666542        3556666654332    33333333344554455443321111  01   1


Q ss_pred             CCCHHHHHHHHHHh
Q 026412          116 GRDLEDFVSFINEK  129 (239)
Q Consensus       116 ~~~~~~l~~~l~~~  129 (239)
                      ..+.+++.+++.+.
T Consensus        74 ~~s~~e~~~~l~~~   87 (111)
T cd03036          74 SLSEEEALELLSSD   87 (111)
T ss_pred             cCCHHHHHHHHHhC
Confidence            23556677777654

Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.

>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=84.44  E-value=2.5  Score=33.93  Aligned_cols=43  Identities=19%  Similarity=0.365  Sum_probs=34.6

Q ss_pred             hHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhCCCC
Q 026412           87 DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSR  134 (239)
Q Consensus        87 ~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~  134 (239)
                      ..++++||+++|++++  .+   .....|..+++.+..-|.+.++...
T Consensus       175 ~~A~e~gI~gVP~fv~--d~---~~~V~Gaq~~~v~~~al~~~~~~~~  217 (225)
T COG2761         175 AAAQEMGIRGVPTFVF--DG---KYAVSGAQPYDVLEDALRQLLAEKA  217 (225)
T ss_pred             HHHHHCCCccCceEEE--cC---cEeecCCCCHHHHHHHHHHHHhccc
Confidence            5678999999999877  22   2556899999999999999876543

>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=83.76  E-value=2.4  Score=26.98  Aligned_cols=51  Identities=16%  Similarity=0.234  Sum_probs=31.8

Q ss_pred             EEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----chhHHHHcCCCCCCeEE
Q 026412           45 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----YKDLAEKYGVSGFPTLK  101 (239)
Q Consensus        45 V~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~Pt~~  101 (239)
                      ..|+.++|++|++..-.+....-      .+....+|...    .+++.+......+|++.
T Consensus         2 ~Ly~~~~~~~~~~v~~~l~~~gi------~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~   56 (74)
T cd03045           2 DLYYLPGSPPCRAVLLTAKALGL------ELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV   56 (74)
T ss_pred             EEEeCCCCCcHHHHHHHHHHcCC------CCEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence            46889999999987655554322      24455555432    24555555556799984

GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.

>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=81.96  E-value=3  Score=32.62  Aligned_cols=44  Identities=20%  Similarity=0.326  Sum_probs=33.1

Q ss_pred             hhHHHHcCCCCCCeEEEEeCCCcCccccCC--CCCHHHHHHHHHHhh
Q 026412           86 KDLAEKYGVSGFPTLKFFPKGNKDGEEYGG--GRDLEDFVSFINEKC  130 (239)
Q Consensus        86 ~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g--~~~~~~l~~~l~~~~  130 (239)
                      ..++++.++.+|||+.+-++| +....-.|  ..+++++..++.+.+
T Consensus       164 r~l~~rlg~~GfPTl~le~ng-~~~~l~~g~y~~~~~~~~arl~~~~  209 (212)
T COG3531         164 RRLMQRLGAAGFPTLALERNG-TMYVLGTGAYFGSPDAWLARLAQRL  209 (212)
T ss_pred             HHHHHHhccCCCCeeeeeeCC-ceEeccCCcccCCcHHHHHHHHHHH
Confidence            468889999999999999876 43333345  467888888887764

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=81.93  E-value=20  Score=30.18  Aligned_cols=90  Identities=17%  Similarity=0.212  Sum_probs=59.0

Q ss_pred             cCCCcEEEEEECC-----CChHHhhHhHHHHHHHHHccCC----CCeEEEEEeCccchhHHHHc--CCCCCCeEEEEeCC
Q 026412           38 GQDRGALVEFYAP-----WCGHCKNLAPTYEKVAAAFTLE----DDVVVANLDADKYKDLAEKY--GVSGFPTLKFFPKG  106 (239)
Q Consensus        38 ~~~k~vlV~F~a~-----wC~~C~~~~~~~~~~a~~~~~~----~~v~~~~vd~~~~~~l~~~~--~i~~~Pt~~~~~~g  106 (239)
                      .++|.|.+..-..     ...+-++++...++.++.+.+.    .++.|+.+|..+.   +.+.  .--+.|++++|.-.
T Consensus       248 ~sGKLVaLaVidEkhk~nns~eh~~~~ki~eEaakd~Rd~pdfh~dFQF~hlDGnD~---~nqilM~als~P~l~i~Nts  324 (468)
T KOG4277|consen  248 ASGKLVALAVIDEKHKFNNSSEHREFHKIAEEAAKDLRDHPDFHNDFQFAHLDGNDL---ANQILMAALSEPHLFIFNTS  324 (468)
T ss_pred             cCCceEEEEEeccccccCCcchhHHHHHHHHHHHHHHHhChhhhhhceeeccchhHH---HHHHHHHhhcCCeEEEEecC
Confidence            5667666655432     3456788999999999888765    4689999987643   2222  22368999999765


Q ss_pred             CcCcccc---CCCCCHHHHHHHHHHhh
Q 026412          107 NKDGEEY---GGGRDLEDFVSFINEKC  130 (239)
Q Consensus       107 ~~~~~~~---~g~~~~~~l~~~l~~~~  130 (239)
                      +.....-   ....+.+++++||++..
T Consensus       325 nqeYfLse~d~qikniedilqFients  351 (468)
T KOG4277|consen  325 NQEYFLSEDDPQIKNIEDILQFIENTS  351 (468)
T ss_pred             chheeeccCChhhhhHHHHHHHHhccc
Confidence            4322211   12367899999998743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	239
1mek_A	120	Human Protein Disulfide Isomerase, Nmr, 40 Structur		9e-23
2dml_A	130	The Solution Structure Of The First Thioredoxin Dom		1e-22
2alb_A	113	Nmr Structure Of The N-Terminal Domain A Of The Gly		4e-20
3f8u_A	481	TapasinERP57 HETERODIMER Length = 481		7e-20
2dmm_A	142	The Solution Structure Of The Second Thioredoxin Do		1e-19
3idv_A	241	Crystal Structure Of The A0a Fragment Of Erp72 Leng		4e-19
2dj2_A	120	The Solution Structure Of The Second Thioredoxin Do		4e-19
2dj1_A	140	The Solution Structure Of The First Thioredoxin Dom		2e-18
3uvt_A	111	Crystal Structure Of The Third Catalytic Domain Of		3e-18
2diz_A	117	The Solution Structure Of The Third Thioredoxin Dom		6e-18
3uj1_A	110	Crystal Structure Of The Third Thioredoxin Domain O		1e-17
1x5d_A	133	The Solution Structure Of The Second Thioredoxin-Li		2e-17
2djj_A	121	Solution Structure Of The A' Domain Of Thermophilic		5e-17
2dj3_A	133	The Solution Structure Of The Third Thioredoxin Dom		6e-17
2b5e_A	504	Crystal Structure Of Yeast Protein Disulfide Isomer		3e-16
3uem_A	361	Crystal Structure Of Human Pdi Bb'a' Domains Length		2e-15
1x5c_A	121	The Solution Structure Of The Second Thioredoxin-Li		4e-15
3ed3_A	298	Crystal Structure Of The Yeast DithiolDISULFIDE Oxi		5e-14
2r2j_A	382	Crystal Structure Of Human Erp44 Length = 382		1e-13
2fd3_A	108	Crystal Structure Of Thioredoxin Mutant P34h Length		2e-13
1t00_A	112	The Structure Of Thioredoxin From S. Coelicolor Len		9e-13
2h75_A	108	Crystal Structure Of Thioredoxin Mutant D13e In Hex		1e-12
2h70_A	108	Crystal Structure Of Thioredoxin Mutant D9e In Hexa		1e-12
2h73_A	108	Crystal Structure Of Thioredoxin Mutant D43e In Hex		1e-12
3dxb_A	222	Structure Of The Uhm Domain Of Puf60 Fused To Thior		1e-12
2h71_A	108	Crystal Structure Of Thioredoxin Mutant D47e In Hex		2e-12
2h72_A	108	Crystal Structure Of Thioredoxin Mutant E85d In Hex		3e-12
2trx_A	108	Crystal Structure Of Thioredoxin From Escherichia C		3e-12
2eio_A	108	Design Of Disulfide-Linked Thioredoxin Dimers And M		4e-12
2eiq_A	108	Design Of Disulfide-linked Thioredoxin Dimers And M		4e-12
2h6y_A	108	Crystal Structure Of Thioredoxin Mutant E48d In Hex		4e-12
2eir_A	108	Design Of Disulfide-Linked Thioredoxin Dimers And M		4e-12
1xob_A	108	Thioredoxin (Reduced Dithio Form), Nmr, 20 Structur		5e-12
2h6z_A	108	Crystal Structure Of Thioredoxin Mutant E44d In Hex		5e-12
3dyr_A	111	Crystal Structure Of E. Coli Thioredoxin Mutant I76		6e-12
1quw_A	105	Solution Structure Of The Thioredoxin From Bacillus		7e-12
1zzy_A	108	Crystal Structure Of Thioredoxin Mutant L7v Length		9e-12
2ppt_A	155	Crystal Structure Of Thioredoxin-2 Length = 155		9e-12
2tir_A	108	Crystal Structure Analysis Of A Mutant Escherichia		1e-11
2h76_A	108	Crystal Structure Of Thioredoxin Mutant D10e In Hex		1e-11
2h74_A	108	Crystal Structure Of Thioredoxin Mutant D2e In Hexa		1e-11
1nw2_A	105	The Crystal Structure Of The Mutant R82e Of Thiored		1e-11
2fch_A	108	Crystal Structure Of Thioredoxin Mutant G74s Length		2e-11
1nsw_A	105	The Crystal Structure Of The K18g Mutant Of The Thi		3e-11
1txx_A	108	Active-Site Variant Of E.Coli Thioredoxin Length =		3e-11
2o8v_B	128	Paps Reductase In A Covalent Complex With Thioredox		4e-11
1f6m_C	108	Crystal Structure Of A Complex Between Thioredoxin		5e-11
1rqm_A	105	Solution Structure Of The K18gR82E ALICYCLOBACILLUS		5e-11
1keb_A	108	Crystal Structure Of Double Mutant M37l,P40s E.Coli		5e-11
2yj7_A	106	Crystal Structure Of A Hyperstable Protein From The		6e-11
1tho_A	109	Crystal Structure Of A Mutant Escherichia Coli Thio		6e-11
1x5e_A	126	The Solution Structure Of The Thioredoxin-Like Doma		7e-11
2i9h_A	103	Nmr Solution Structure Of The Reduced Form Of Thior		1e-10
3f3q_A	109	Crystal Structure Of The Oxidised Form Of Thioredox		1e-10
2cvk_A	110	Crystal Structure Of Thermus Thermophilus Thioredox		2e-10
2yzu_A	109	Crystal Structure Of Oxidized Thioredoxin From Ther		2e-10
2j23_A	121	Cross-Reactivity And Crystal Structure Of Malassezi		3e-10
1syr_A	112	Initial Structural Analysis Of Plasmodium Falciparu		3e-10
1zcp_A	108	Crystal Structure Of A Catalytic Site Mutant E. Col		3e-10
1srx_A	108	Three-Dimensional Structure Of Escherichia Coli Thi		4e-10
1xw9_A	106	Drospohila Thioredoxin, Oxidized, P21 Length = 106		6e-10
1xwa_A	111	Drospohila Thioredoxin, Oxidized, P41212 Length = 1		6e-10
2vim_A	104	X-Ray Structure Of Fasciola Hepatica Thioredoxin Le		8e-10
2l4q_A	116	Solution Structures Of Oxidized And Reduced Thiored		1e-09
1oaz_A	123	Ige Fv Spe7 Complexed With A Recombinant Thioredoxi		1e-09
2i1u_A	121	Mycobacterium Tuberculosis Thioredoxin C Length = 1		2e-09
3f3r_A	109	Crystal Structure Of Yeast Thioredoxin1-Glutathione		2e-09
2fa4_A	111	Crystal Structure Of Oxidized Form From Saccharomyc		3e-09
2hsy_A	104	Solution Structure Of Thioredoxin 2 From Saccharomy		3e-09
3hyp_A	141	Crystal Structure Of Bacteroides Fragilis Trxp_s105		3e-09
3m9j_A	105	Crystal Structure Of Human Thioredoxin C6973S DOUBL		4e-09
2hsh_A	105	Crystal Structure Of C73s Mutant Of Human Thioredox		4e-09
3aps_A	122	Crystal Structure Of Trx4 Domain Of Erdj5 Length =		4e-09
2xbq_A	117	Crystal Structure Of Reduced Schistosoma Mansoni Th		5e-09
2xbi_A	108	Crystal Structure Of Schistosoma Mansoni Thioredoxi		5e-09
1v98_A	140	Crystal Structure Analysis Of Thioredoxin From Ther		5e-09
1dby_A	107	Nmr Structures Of Chloroplast Thioredoxin M Ch2 Fro		5e-09
2ifq_A	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		6e-09
2ifq_B	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		6e-09
3zzx_A	105	Crystallographic Structure Of Thioredoxin From Lito		6e-09
3hhv_A	110	The Crystal Structure Of The Thioredoxin A2 From Su		6e-09
3tco_A	109	Crystallographic And Spectroscopic Characterization		7e-09
2l5l_A	136	Solution Structure Of Thioredoxin From Bacteroides		7e-09
2e0q_A	104	Crystal Structure Of K53e Thioredoxin From Sulfolob		7e-09
2vm1_A	118	Crystal Structure Of Barley Thioredoxin H Isoform 1		7e-09
1trs_A	105	The High-Resolution Three-Dimensional Solution Stru		9e-09
1faa_A	124	Crystal Structure Of Thioredoxin F From Spinach Chl		9e-09
1m7t_A	107	Solution Structure And Dynamics Of The Human-Escher		1e-08
3trx_A	105	High-Resolution Three-Dimensional Structure Of Redu		1e-08
2qc7_A	240	Crystal Structure Of The Protein-disulfide Isomeras		1e-08
3hxs_A	141	Crystal Structure Of Bacteroides Fragilis Trxp Leng		2e-08
1aiu_A	105	Human Thioredoxin (D60n Mutant, Reduced Form) Lengt		2e-08
2gzy_A	104	Solution Structures Of The Reduced Form Of Thioredo		2e-08
3nof_A	118	Mycobacterium Tuberculosis Thioredoxin C C40s Mutan		3e-08
2o87_A	106	S. Aureus Thioredoxin P31s Mutant Length = 106		3e-08
2o85_A	107	S. Aureus Thioredoxin P31t Mutant Length = 107		3e-08
1thx_A	115	Thioredoxin-2 Length = 115		3e-08
2o7k_A	107	S. Aureus Thioredoxin Length = 107		3e-08
4dss_B	112	Crystal Structure Of Peroxiredoxin Ahp1 From Saccha		4e-08
3pin_A	104	Crystal Structure Of Mxr1 From Saccharomyces Cerevi		5e-08
1uvz_A	119	Structure Of Human Thioredoxin 2 Length = 119		5e-08
3kd0_A	105	Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showin		5e-08
1ti3_A	113	Solution Structure Of The Thioredoxin H1 From Popla		6e-08
1fb0_A	105	Crystal Structure Of Thioredoxin M From Spinach Chl		7e-08
1gl8_A	104	Solution Structure Of Thioredoxin M From Spinach, O		7e-08
3h79_A	127	Crystal Structure Of Trypanosoma Cruzi Thioredoxin-		7e-08
3qfa_C	116	Crystal Structure Of The Human Thioredoxin Reductas		9e-08
3e3e_A	105	Human Thioredoxin Double Mutant C35s,C73r Length =		1e-07
1mdi_A	105	High Resolution Solution Nmr Structure Of Mixed Dis		1e-07
1f9m_A	112	Crystal Structure Of Thioredoxin F From Spinach Chl		2e-07
2voc_A	112	Thioredoxin A Active Site Mutants Form Mixed Disulf		3e-07
2ipa_A	104	Solution Structure Of Trx-Arsc Complex Length = 104		3e-07
1wmj_A	130	Solution Structure Of Thioredoxin Type H From Oryza		4e-07
2o89_A	107	S. Aureus Thioredoxin P31tC32S MUTANT Length = 107		5e-07
2vlt_A	122	Crystal Structure Of Barley Thioredoxin H Isoform 2		6e-07
3q6o_A	244	Oxidoreductase Fragment Of Human Qsox1 Length = 244		6e-07
2puk_C	106	Crystal Srtucture Of The Binary Complex Between Fer		9e-07
2oe0_A	114	Crystal Structure Of Mitochondrial Thioredoxin 3 Fr		1e-06
2f51_A	118	Structure Of Trichomonas Vaginalis Thioredoxin Leng		1e-06
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		1e-06
3die_A	106	Domain Swapping Of Staphylococcus Aureus Thioredoxi		2e-06
3t58_A	519	C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTER		2e-06
1erw_A	105	Human Thioredoxin Double Mutant With Cys 32 Replace		2e-06
1g7d_A	106	Nmr Structure Of Erp29 C-Domain Length = 106		2e-06
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		3e-06
3p2a_A	148	Crystal Structure Of Thioredoxin 2 From Yersinia Pe		3e-06
2pu9_C	111	Crystal Srtucture Of The Binary Complex Between Fer		3e-06
3hz4_A	140	Crystal Structure Of Thioredoxin From Methanosarcin		4e-06
3vfi_A	104	Crystal Structure Of A Metagenomic Thioredoxin Leng		5e-06
3qdn_A	287	Putative Thioredoxin Protein From Salmonella Typhim		9e-06
2hxk_A	105	Crystal Structure Of S-Nitroso Thioredoxin Length =		9e-06
2iwt_A	125	Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Compl		1e-05
3qou_A	287	Crystal Structure Of E. Coli Ybbn Length = 287		1e-05
1xfl_A	124	Solution Structure Of Thioredoxin H1 From Arabidops		2e-05
2i4a_A	107	Crystal Structure Of Thioredoxin From The Acidophil		3e-05
3hdc_A	158	The Crystal Structure Of Thioredoxin Protein From G		2e-04
2dj0_A	137	The Solution Structure Of The Thioredoxin Domain Of		7e-04
1r26_A	125	Crystal Structure Of Thioredoxin From Trypanosoma B		7e-04

>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures Length = 120

Iteration: 1
 Score =  103 bits (257), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 73/113 (64%), Gaps = 2/113 (1%)
Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLD 81
           D V+VL + NF + +   +  LVEFYAPWCGHCK LAP Y K A     E  ++ +A +D
Sbjct: 7   DHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVD 66
Query: 82  ADKYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINEKCGTS 133
           A +  DLA++YGV G+PT+KFF  G+    +EY  GR+ +D V+++ ++ G +
Sbjct: 67  ATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGPA 119

>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A6 Length = 130

Iteration: 1
 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/103 (50%), Positives = 66/103 (64%), Gaps = 3/103 (2%)
Query: 22  ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           +DDV+ LT  NF +EV Q  G  LVEFYAPWCGHC+ L P ++K A A  L+D V V  +
Sbjct: 16  SDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATA--LKDVVKVGAV 73
Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFV 123
           +ADK++ L  +YGV GFPT+K F       E+Y GGR  E  V
Sbjct: 74  NADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIV 116

>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The Glycoprotein Chaperone Erp57 Length = 113

Iteration: 1
 Score = 94.7 bits (234), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/117 (47%), Positives = 71/117 (60%), Gaps = 14/117 (11%)
Query: 24  DVVVLTEDNFEKEVGQDRGA----LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN 79
           DV+ LT+DNFE  +  D G+    LVEF+APWCGHCK LAP YE  AAA  L+  V +A 
Sbjct: 2   DVLELTDDNFESRI-SDTGSAGLMLVEFFAPWCGHCKRLAPEYE--AAATRLKGIVPLAK 58
Query: 80  LDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEE---YGGGRDLEDFVSFINEKCGTS 133
           +D     +   KYGVSG+PTLK F    +DGEE   Y G R  +  VS + ++ G +
Sbjct: 59  VDCTANTNTCNKYGVSGYPTLKIF----RDGEEAGAYDGPRTADGIVSHLKKQAGPA 111

>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER Length = 481

Iteration: 1
 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 68/116 (58%), Gaps = 12/116 (10%)
Query: 24  DVVVLTEDNFEKEVGQDRGA---LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           DV+ LT+DNFE  +     A   LVEF+APWCGH K LAP YE  AAA  L+  V +A +
Sbjct: 2   DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYE--AAATRLKGIVPLAKV 59
Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEE---YGGGRDLEDFVSFINEKCGTS 133
           D     +   KYGVSG+PTLK F    +DGEE   Y G R  +  VS + ++ G +
Sbjct: 60  DCTANTNTCNKYGVSGYPTLKIF----RDGEEAGAYDGPRTADGIVSHLKKQAGPA 111

>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of Human Protein Disulfide-Isomerase A3 Length = 142

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 69/104 (66%), Gaps = 3/104 (2%)
Query: 25  VVVLTEDNFEKEVG-QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
           V V+  +NF++ V  +++  L+EFYAPWCGHCKNL P Y+++    + + ++V+A +DA 
Sbjct: 29  VKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDAT 88
Query: 84  KYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFI 126
              D+   Y V GFPT+ F P   K + ++Y GGR+L DF+S++
Sbjct: 89  A-NDVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYL 131

>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72 Length = 241

Iteration: 1
 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/109 (44%), Positives = 67/109 (61%), Gaps = 3/109 (2%)
Query: 26  VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFT-LEDDVVVANLDADK 84
           +VLT++NF++ V      LVEFYAPWCGHCK LAP YEK A   +     + +A +DA  
Sbjct: 133 LVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATA 192
Query: 85  YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS 133
             DLA+++ VSG+PTLK F KG     +Y G R+    V ++ E+ G +
Sbjct: 193 ETDLAKRFDVSGYPTLKIFRKGRP--YDYNGPREKYGIVDYMIEQSGAA 239

>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 120

Iteration: 1
 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/109 (44%), Positives = 66/109 (60%), Gaps = 3/109 (2%)
Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFT-LEDDVVVANLDAD 83
            + LT+DNF+  V      LVEFYAPWCGHCK LAP YEK A   +     + +A +DA 
Sbjct: 9   TLSLTKDNFDDVVNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDAT 68
Query: 84  KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGT 132
           +  DLA+++ VSG+PTLK F KG     +Y G R+    V ++ E+ G+
Sbjct: 69  EQTDLAKRFDVSGYPTLKIFRKGRP--FDYNGPREKYGIVDYMIEQSGS 115

>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 140

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/121 (41%), Positives = 68/121 (56%), Gaps = 7/121 (5%)
Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDD---VVVANLD 81
           V VL + NF+  V      L+EFYAPWCGHCK  AP YEK+A+  TL+D+   + VA +D
Sbjct: 19  VWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIAS--TLKDNDPPIAVAKID 76
Query: 82  ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLT 141
           A     LA K+ VSG+PT+K   KG     +Y G R  E+ V+ + E          ++T
Sbjct: 77  ATSASMLASKFDVSGYPTIKILKKGQ--AVDYDGSRTQEEIVAKVREVSQPDWTPPPEVT 134
Query: 142 S 142
           S
Sbjct: 135 S 135

>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46 Length = 111

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 64/108 (59%), Gaps = 3/108 (2%)
Query: 20  ALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAA-FTLEDDVVVA 78
            L   V+ LTE+NF+  + +     ++FYAPWCGHCK LAPT+E+++   F     V +A
Sbjct: 2   PLGSTVLALTENNFDDTIAEGI-TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIA 60
Query: 79  NLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 126
            +D    +++  KY V G+PTL  F +G K   E+ GGRDL+    F+
Sbjct: 61  EVDCTAERNICSKYSVRGYPTLLLF-RGGKKVSEHSGGRDLDSLHRFV 107

>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of Human Thioredoxin Domain-Containing Protein 5 Length = 117

Iteration: 1
 Score = 87.4 bits (215), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 19  SALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAA-FTLEDDVVV 77
           S  +  V+ LTE+NF+  + +     ++FYAPWCGHCK LAPT+E+++   F     V +
Sbjct: 3   SGSSGTVLALTENNFDDTIAEGI-TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKI 61
Query: 78  ANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 126
           A +D    +++  KY V G+PTL  F +G K   E+ GGRDL+    F+
Sbjct: 62  AEVDCTAERNICSKYSVRGYPTLLLF-RGGKKVSEHSGGRDLDSLHRFV 109

>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human Erp46 Length = 110

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 63/103 (61%), Gaps = 3/103 (2%)
Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAA-FTLEDDVVVANLDAD 83
           V+ LTE+NF+  + +     ++FYAPWCGHCK LAPT+E+++   F     V +A +D  
Sbjct: 2   VLALTENNFDDTIAEGI-TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCT 60
Query: 84  KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 126
             +++  KY V G+PTL  F +G K   E+ GGRDL+    F+
Sbjct: 61  AERNICSKYSVRGYPTLLLF-RGGKKVSEHSGGRDLDSLHRFV 102

>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like Domain Of Human Protein Disulfide-Isomerase A6 Length = 133

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/109 (44%), Positives = 64/109 (58%), Gaps = 4/109 (3%)
Query: 19  SALADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAF--TLEDDV 75
           S  + DV+ LT+D+F+K V       +VEFYAPWCGHCKNL P +   A+      +  V
Sbjct: 3   SGSSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKV 62
Query: 76  VVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVS 124
            +A +DA   + LA +YG+ GFPT+K F KG     +Y GGR   D VS
Sbjct: 63  KLAAVDATVNQVLASRYGIRGFPTIKIFQKGESP-VDYDGGRTRSDIVS 110

>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal Protein Disulfide Isomerase Length = 121

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 46/109 (42%), Positives = 65/109 (59%), Gaps = 8/109 (7%)
Query: 25  VVVLTEDNFEKEVGQD-RGALVEFYAPWCGHCKNLAPTYEKVAAAFT---LEDDVVVANL 80
           V V+   N+ + V  D +  L+EFYAPWCGHCK LAP YE++ A +     +D VV+A +
Sbjct: 9   VTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKV 68
Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKGNKDGE-EYGGGRDLEDFVSFINE 128
           DA    D+ ++  + GFPT+K +P G K     Y G R +ED + FI E
Sbjct: 69  DATA-NDVPDE--IQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAE 114

>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 133

Iteration: 1
 Score = 84.3 bits (207), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Query: 44  LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 103
           L+EFYAPWCGHCK L P Y  +   +  + D+V+A +DA       ++Y V GFPT+ F 
Sbjct: 29  LIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTIYFA 88
Query: 104 PKGNKDGEEY--GGGRDLEDFVSFINEKCGTSRDGKGQLTSTA 144
           P G+K       GG RDLE    FI+E        K +L+  +
Sbjct: 89  PSGDKKNPIKFEGGNRDLEHLSKFIDEHATKRSRTKEELSGPS 131

>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase Length = 504

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 60/103 (58%), Gaps = 2/103 (1%)
Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
           VV L  D+F + +      L EF+APWCGHCKN+AP Y K AA   +E ++ +A +D  +
Sbjct: 16  VVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVK-AAETLVEKNITLAQIDCTE 74
Query: 85  YKDLAEKYGVSGFPTLKFFPKGNKDGE-EYGGGRDLEDFVSFI 126
            +DL  ++ + GFP+LK F   + +   +Y G R  E  V F+
Sbjct: 75  NQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFM 117

>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains Length = 361

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 63/116 (54%), Gaps = 7/116 (6%)
Query: 25  VVVLTEDNFEK-EVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
           V VL   NFE     + +   VEFYAPWCGHCK LAP ++K+   +   +++V+A +D+ 
Sbjct: 251 VKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDST 310
Query: 84  KYKDLAEKYGVSGFPTLKFFP-KGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKG 138
             +   E   V  FPTLKFFP   ++   +Y G R L+ F  F+       +DG G
Sbjct: 311 ANE--VEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFLE---SGGQDGAG 361

>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like Domain Of Human Protein Disulfide-Isomerase Length = 121

Iteration: 1
 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Query: 19  SALADDVVVLTEDNFEK-EVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVV 77
           S  +  V VL   NFE     + +   VEFYAPWCGHCK LAP ++K+   +   +++V+
Sbjct: 3   SGSSGPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVI 62
Query: 78  ANLDADKYKDLAEKYGVSGFPTLKFFP-KGNKDGEEYGGGRDLEDFVSFI 126
           A +D+    +  E   V  FPTLKFFP   ++   +Y G R L+ F  F+
Sbjct: 63  AKMDST--ANEVEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFL 110

>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE Oxidoreductase Mpd1p Length = 298

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 53/115 (46%), Gaps = 17/115 (14%)
Query: 28  LTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 86
           LT  +F+K +   +  +LVEFYAPWCGHCK L+ T+ K A        V   N D +K K
Sbjct: 22  LTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNK 81
Query: 87  DLAEKYGVSGFPTLKFFPKGNKD----------------GEEYGGGRDLEDFVSF 125
            L  KY V+GFPTL  F     D                 E Y G R L   V F
Sbjct: 82  ALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDF 136

>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44 Length = 382

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 4/114 (3%)
Query: 20  ALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEK----VAAAFTLEDDV 75
            L  ++  L  +N ++ +     ALV FYA WC   + L P +E+    +   F  E+ V
Sbjct: 2   PLGSEITSLDTENIDEILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQV 61
Query: 76  VVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK 129
           V A +D D++ D+A++Y +S +PTLK F  G     EY G R ++    +I ++
Sbjct: 62  VFARVDCDQHSDIAQRYRISKYPTLKLFRNGXXXKREYRGQRSVKALADYIRQQ 115

>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h Length = 108

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 3/86 (3%)
Query: 22  ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           +D ++ LT+D+F+ +V +  GA LV+F+A WCGHCK +AP  +++A  +  +  + VA L
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEY--QGKLTVAKL 58
Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKG 106
           + D+    A KYG+ G PTL  F  G
Sbjct: 59  NIDQNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor Length = 112

Iteration: 1
 Score = 70.5 bits (171), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 62/113 (54%), Gaps = 9/113 (7%)
Query: 19  SALADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVV 77
           S +A  +  +T+D+FE++V   D+  LV+F+A WCG C+ +AP+ E +AA +   D + +
Sbjct: 1   SHMAGTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYG--DKIEI 58
Query: 78  ANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG------RDLEDFVS 124
             L+ D+    A KYGV   PTL  +  G       G        RDLEDF++
Sbjct: 59  VKLNIDENPGTAAKYGVMSIPTLNVYQGGEVAKTIVGAKPKAAIVRDLEDFIA 111

>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 22  ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           +D ++ LT+D+FE +V +  GA LV+F+A WCG CK +AP  +++A  +  +  + VA L
Sbjct: 1   SDKIIHLTDDSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKL 58
Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKG 106
           + D+    A KYG+ G PTL  F  G
Sbjct: 59  NIDQNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 22  ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           +D ++ LTED+F+ +V +  GA LV+F+A WCG CK +AP  +++A  +  +  + VA L
Sbjct: 1   SDKIIHLTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKL 58
Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKG 106
           + D+    A KYG+ G PTL  F  G
Sbjct: 59  NIDQNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 22  ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           +D ++ LT+D+F+ +V +  GA LV+F+A WCG CK +AP  E++A  +  +  + VA L
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEY--QGKLTVAKL 58
Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKG 106
           + D+    A KYG+ G PTL  F  G
Sbjct: 59  NIDQNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin Length = 222

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 55/87 (63%), Gaps = 3/87 (3%)
Query: 21  LADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN 79
           ++D ++ LT+D+F+ +V +  GA LV+F+A WCG CK +AP  +++A  +  +  + VA 
Sbjct: 10  MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAK 67
Query: 80  LDADKYKDLAEKYGVSGFPTLKFFPKG 106
           L+ D+    A KYG+ G PTL  F  G
Sbjct: 68  LNIDQNPGTAPKYGIRGIPTLLLFKNG 94

>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 22  ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           +D ++ LT+D+F+ +V +  GA LV+F+A WCG CK +AP  +++A  +  +  + VA L
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEY--QGKLTVAKL 58
Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKG 106
           + D+    A KYG+ G PTL  F  G
Sbjct: 59  NIDQNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 55/87 (63%), Gaps = 3/87 (3%)
Query: 22  ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           +D ++ LT+D+F+ +V +  GA LV+F+A WCG CK +AP  +++A  +  +  + VA L
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKL 58
Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKGN 107
           + D+    A KYG+ G PTL  F  G+
Sbjct: 59  NIDQNPGTAPKYGIRGIPTLLLFKNGD 85

>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At 1.68 Angstroms Resolution Length = 108

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 22  ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           +D ++ LT+D+F+ +V +  GA LV+F+A WCG CK +AP  +++A  +  +  + VA L
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKL 58
Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKG 106
           + D+    A KYG+ G PTL  F  G
Sbjct: 59  NIDQNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 22  ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           +D ++ LT+D+F+ +V +  GA LV+F+A WCG CK +AP  +++A  +  +  + VA L
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKL 58
Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKG 106
           + D+    A KYG+ G PTL  F  G
Sbjct: 59  NIDQNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 22  ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           +D ++ LT+D+F+ +V +  GA LV+F+A WCG CK +AP  +++A  +  +  + VA L
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKL 58
Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKG 106
           + D+    A KYG+ G PTL  F  G
Sbjct: 59  NIDQNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 22  ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           +D ++ LT+D+F+ +V +  GA LV+F+A WCG CK +AP  +++A  +  +  + VA L
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDY--QGKLTVAKL 58
Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKG 106
           + D+    A KYG+ G PTL  F  G
Sbjct: 59  NIDQNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And Multimers Through Analysis Of Crystal Contacts Length = 108

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 22  ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           +D ++ LT+D+F+ +V +  GA LV+F+A WCG CK +AP  +++A  +  +  + VA L
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKL 58
Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKG 106
           + D+    A KYG+ G PTL  F  G
Sbjct: 59  NIDQNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures Length = 108

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 3/85 (3%)
Query: 23  DDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 81
           D ++ LT+D+F+ +V +  GA LV+F+A WCG CK +AP  +++A  +  +  + VA L+
Sbjct: 2   DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLN 59
Query: 82  ADKYKDLAEKYGVSGFPTLKFFPKG 106
            D+    A KYG+ G PTL  F  G
Sbjct: 60  IDQNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 22  ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           +D ++ LT+D+F+ +V +  GA LV+F+A WCG CK +AP  + +A  +  +  + VA L
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEY--QGKLTVAKL 58
Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKG 106
           + D+    A KYG+ G PTL  F  G
Sbjct: 59  NIDQNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In Its Oxidized Form Length = 111

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 22  ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           +D ++ LT+D+F+ +V +  GA LV+F+A WCG CK +AP  +++A  +  +  + VA L
Sbjct: 2   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKL 59
Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKG 106
           + D+    A KYG+ G PTL  F  G
Sbjct: 60  NIDQNPGTAPKYGIRGTPTLLLFKNG 85

>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 12/100 (12%)
Query: 26  VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY 85
           + LT+ NF++ +  D+  LV+F+A WCG C+ +AP  E+ A A    D V VA L+ D+ 
Sbjct: 3   MTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHA--DKVTVAKLNVDEN 60
Query: 86  KDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSF 125
            +   ++G+   PTL  F           GGR ++  + +
Sbjct: 61  PETTSQFGIMSIPTLILF----------KGGRPVKQLIGY 90

>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v Length = 108

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 22  ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           +D ++ +T+D+F+ +V +  GA LV+F+A WCG CK +AP  +++A  +  +  + VA L
Sbjct: 1   SDKIIHVTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKL 58
Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKG 106
           + D+    A KYG+ G PTL  F  G
Sbjct: 59  NIDQNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2 Length = 155

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 44  LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 103
           LV+F+APWCG C+ +AP ++  AAA TL   V +A +D   +  +A ++ + G P    F
Sbjct: 68  LVDFWAPWCGPCRQMAPQFQ--AAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFILF 125
Query: 104 PKGNKDGEEYGGGRDLEDFVSFINEKCGT 132
            KG ++     G R   + V F+  K G 
Sbjct: 126 HKG-RELARAAGARPASELVGFVRGKLGA 153

>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli Thioredoxin In Which Lysine 36 Is Replaced By Glutamic Acid Length = 108

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 22  ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           +D ++ LT+D+F+ +V +  GA LV+F+A WCG C+ +AP  +++A  +  +  + VA L
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEY--QGKLTVAKL 58
Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKG 106
           + D+    A KYG+ G PTL  F  G
Sbjct: 59  NIDQNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 22  ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           +D ++ LT+++F+ +V +  GA LV+F+A WCG CK +AP  +++A  +  +  + VA L
Sbjct: 1   SDKIIHLTDESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKL 58
Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKG 106
           + D+    A KYG+ G PTL  F  G
Sbjct: 59  NIDQNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal (P61) Space Group Length = 108

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Query: 22  ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           ++ ++ LT+D+F+ +V +  GA LV+F+A WCG CK +AP  +++A  +  +  + VA L
Sbjct: 1   SEKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKL 58
Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKG 106
           + D+    A KYG+ G PTL  F  G
Sbjct: 59  NIDQNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin From Alicyclobacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 26  VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY 85
           + LT+ NF++ +  D+  LV+F+A WCG C+ +AP  E+ A A    D V VA L+ D+ 
Sbjct: 3   MTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHA--DKVTVAKLNVDEN 60
Query: 86  KDLAEKYGVSGFPTLKFFPKG 106
            +   ++G+   PTL  F  G
Sbjct: 61  PETTSQFGIMSIPTLILFKGG 81

>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s Length = 108

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 22  ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           +D ++ LT+D+F+ +V +  GA LV+F+A WCG CK +AP  +++A  +  +  + VA L
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKL 58
Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKG 106
           + D+    A KYG+   PTL  F  G
Sbjct: 59  NIDQNPGTAPKYGIRSIPTLLLFKNG 84

>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The Thioredoxin From Alicyclobacillus Acidocaldarius Length = 105

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 12/100 (12%)
Query: 26  VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY 85
           + LT+ NF++ +  D   LV+F+A WCG C+ +AP  E+ A A    D V VA L+ D+ 
Sbjct: 3   MTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHA--DKVTVAKLNVDEN 60
Query: 86  KDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSF 125
            +   ++G+   PTL  F           GGR ++  + +
Sbjct: 61  PETTSQFGIMSIPTLILF----------KGGRPVKQLIGY 90

>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin Length = 108

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 22  ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           +D ++ LT+D+F+ +V +  GA LV+F+A WC  CK +AP  +++A  +  +  + VA L
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEY--QGKLTVAKL 58
Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKG 106
           + D+    A KYG+ G PTL  F  G
Sbjct: 59  NIDQNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a Length = 128

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 22  ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           +D ++ LT+D+F+ +V +  GA LV+F+A WCG  K +AP  +++A  +  +  + VA L
Sbjct: 21  SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEY--QGKLTVAKL 78
Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKG 106
           + D+    A KYG+ G PTL  F  G
Sbjct: 79  NIDQNPGTAPKYGIRGIPTLLLFKNG 104

>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+ Length = 108

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 22  ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           +D ++ LT+D+F+ +V +  GA LV+F+A WCG  K +AP  +++A  +  +  + VA L
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEY--QGKLTVAKL 58
Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKG 106
           + D+    A KYG+ G PTL  F  G
Sbjct: 59  NIDQNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS Acidocaldarius Thioredoxin Mutant Length = 105

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 26  VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY 85
           + LT+ NF++ +  D   LV+F+A WCG C+ +AP  E+ A A    D V VA L+ D+ 
Sbjct: 3   MTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHA--DKVTVAKLNVDEN 60
Query: 86  KDLAEKYGVSGFPTLKFFPKG 106
            +   ++G+   PTL  F  G
Sbjct: 61  PETTSQFGIMSIPTLILFKGG 81

>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli Thioredoxin Length = 108

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 22  ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           +D ++ LT+D+F+ +V +  GA LV+F+A WCG CK +A   +++A  +  +  + VA L
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEY--QGKLTVAKL 58
Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKG 106
           + D+    A KYG+ G PTL  F  G
Sbjct: 59  NIDQNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The Precambrian Period Length = 106

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 25  VVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
           V+ +T++NFE+EV   D+  LV+F+APWCG C+ +AP  E++A  +  E  V V  ++ D
Sbjct: 3   VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEY--EGKVKVVKVNVD 60
Query: 84  KYKDLAEKYGVSGFPTLKFFPKGN 107
           +  + A +YG+   PTL  F  G 
Sbjct: 61  ENPNTAAQYGIRSIPTLLLFKNGQ 84

>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin With An Arginine Insertion In The Active Site Length = 109

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 54/87 (62%), Gaps = 4/87 (4%)
Query: 22  ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGH-CKNLAPTYEKVAAAFTLEDDVVVAN 79
           +D ++ LT+D+F+ +V +  GA LV+F+A WCG  CK +AP  +++A  +  +  + VA 
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADEY--QGKLTVAK 58
Query: 80  LDADKYKDLAEKYGVSGFPTLKFFPKG 106
           L+ D+    A KYG+ G PTL  F  G
Sbjct: 59  LNIDQNPGTAPKYGIRGIPTLLLFKNG 85

>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of Human Thioredoxin-Related Transmembrane Protein Length = 126

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 66/113 (58%), Gaps = 9/113 (7%)
Query: 19  SALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA 78
           S  + +V V+T++N+ + +  D   ++EFYAPWC  C+NL P +E   A +  + +V +A
Sbjct: 3   SGSSGNVRVITDENWRELLEGD--WMIEFYAPWCPACQNLQPEWESF-AEWGEDLEVNIA 59
Query: 79  NLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGE--EYGGGRDLEDFVSFINEK 129
            +D  +   L+ ++ ++  PT+       KDGE   Y G R  +DF++FI++K
Sbjct: 60  KVDVTEQPGLSGRFIINALPTIYHC----KDGEFRRYQGPRTKKDFINFISDK 108

>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin 1 From Yeast (Trx1) Length = 103

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 29  TEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDL 88
           T   F+  + QD+  +V+FYA WCG CK +AP  EK +  +   D      LD D+  D+
Sbjct: 7   TASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQAD---FYKLDVDELGDV 63
Query: 89  AEKYGVSGFPTLKFFPKGNKDGEEYGGG 116
           A+K  VS  PTL  F  G +  +  G  
Sbjct: 64  AQKNEVSAMPTLLLFKNGKEVAKVVGAN 91

>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1 From Saccharomyces Cerevisiae Length = 109

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 29  TEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDL 88
           T   F+  + QD+  +V+FYA WCG CK +AP  EK +  +   D      LD D+  D+
Sbjct: 13  TASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQAD---FYKLDVDELGDV 69
Query: 89  AEKYGVSGFPTLKFFPKGNKDGEEYGGG 116
           A+K  VS  PTL  F  G +  +  G  
Sbjct: 70  AQKNEVSAMPTLLLFKNGKEVAKVVGAN 97

>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin Length = 110

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
Query: 28  LTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD 87
           +T+ NF++ +GQ    LV+F+A WC  C+ +AP  E++A  +  E  ++VA LD D+   
Sbjct: 7   VTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEY--EGKLLVAKLDVDENPK 64
Query: 88  LAEKYGVSGFPTLKFFPKGNKDGE 111
            A +Y V   PT+  F    KDG+
Sbjct: 65  TAXRYRVXSIPTVILF----KDGQ 84

>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus Thermophilus Hb8 Length = 109

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
Query: 28  LTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD 87
           +T+ NF++ +GQ    LV+F+A WC  C+ +AP  E++A  +  E  ++VA LD D+   
Sbjct: 6   VTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEY--EGKLLVAKLDVDENPK 63
Query: 88  LAEKYGVSGFPTLKFFPKGNKDGE 111
            A +Y V   PT+  F    KDG+
Sbjct: 64  TAXRYRVXSIPTVILF----KDGQ 83

>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia Sympodialis Thioredoxin (Mala S 13), A Member Of A New Pan- Allergen Family Length = 121

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 26  VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY 85
           V+ + D F++  G D+  +++F+A WCG CK + P +EK++      D V    +D D+ 
Sbjct: 19  VISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDT-PAGDKVGFYKVDVDEQ 77
Query: 86  KDLAEKYGVSGFPTLKFFPKGNK 108
             +A++ G+   PT  FF  G K
Sbjct: 78  SQIAQEVGIRAMPTFVFFKNGQK 100

>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum Thioredoxin Length = 112

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 26  VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY 85
           +V ++  F+  + Q+   +V+F+A WCG CK +AP YE+ +  +T    +V   +D D+ 
Sbjct: 12  IVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT---KMVFIKVDVDEV 68
Query: 86  KDLAEKYGVSGFPTLKFFPKGN 107
            ++ EK  ++  PT K +  G+
Sbjct: 69  SEVTEKENITSMPTFKVYKNGS 90

>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa (Caca) Length = 108

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 22  ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           +D ++ LT+D+F+ +V +  GA LV+F+A WC   K +AP  +++A  +  +  + VA L
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADEY--QGKLTVAKL 58
Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKG 106
           + D+    A KYG+ G PTL  F  G
Sbjct: 59  NIDQNPGTAPKYGIRGIPTLLLFKNG 84

>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli Thioredoxin-S2 To 2.8 Angstroms Resolution Length = 108

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 22  ADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           +D ++ LT+D+F+ ++ +  GA LV+F+A WCG CK +AP  +++A  +  +  + VA L
Sbjct: 1   SDKIIHLTDDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKL 58
Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKG 106
           + D+    A KY   G PTL  F  G
Sbjct: 59  NIDQNPGTAPKYIERGIPTLLLFKNG 84

>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21 Length = 106

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 43  ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 102
            +++F+A WCG CK ++P   +++  F   D+VVV  +D D+ +D+A +Y +S  PT  F
Sbjct: 23  VVLDFFATWCGPCKMISPKLVELSTQFA--DNVVVLKVDVDECEDIAMEYNISSMPTFVF 80
Query: 103 FPKGNKDGEEYGG--GRDLEDFV 123
              G K  EE+ G   + LED +
Sbjct: 81  LKNGVK-VEEFAGANAKRLEDVI 102

>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212 Length = 111

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 5/82 (6%)
Query: 44  LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 103
           +++F+A WCG CK ++P   +++  F   D+VVV  +D D+ +D+A +Y +S  PT  F 
Sbjct: 29  VLDFFATWCGPCKMISPKLVELSTQFA--DNVVVLKVDVDECEDIAMEYNISSMPTFVFL 86
Query: 104 PKGNKDGEEYGG--GRDLEDFV 123
             G K  EE+ G   + LED +
Sbjct: 87  KNGVK-VEEFAGANAKRLEDVI 107

>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin Length = 104

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 9/89 (10%)
Query: 26  VVLTEDNFEKEVGQDRGAL--VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
           V+ T  + EK + +++G L  V+F+A WCG C+N+AP  E +A       +V  A +D D
Sbjct: 3   VLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP---EVEFAKVDVD 59
Query: 84  KYKDLAEKYGVSGFPTLKFFPKGNKDGEE 112
           + ++ A KY V+  PT  F     KDG+E
Sbjct: 60  QNEEAAAKYSVTAMPTFVFI----KDGKE 84

>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C From M. Tb Length = 116

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Query: 28  LTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 86
           +T+ +F  +V   ++  LV+F+A WCG CK +AP  E++A       D+ VA LD D   
Sbjct: 12  VTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERA--TDLTVAKLDVDTNP 69
Query: 87  DLAEKYGVSGFPTLKFFPKGNKDGEEYGGG------RDLEDFVSFIN 127
           + A  + V   PTL  F  G       G        R+L D V  +N
Sbjct: 70  ETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPNLN 116

>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin Length = 123

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 17/101 (16%)
Query: 21  LADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGH--------------CKNLAPTYEKV 65
           ++D ++ LT+D+F+ +V +  GA LV+F+A WCG               CK +AP  +++
Sbjct: 1   MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEI 60
Query: 66  AAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG 106
           A  +  +  + VA L+ D+    A KYG+ G PTL  F  G
Sbjct: 61  ADEY--QGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 99

>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C Length = 121

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Query: 28  LTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 86
           +T+ +F  +V   ++  LV+F+A WCG CK +AP  E++A       D+ VA LD D   
Sbjct: 17  VTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERAT--DLTVAKLDVDTNP 74
Query: 87  DLAEKYGVSGFPTLKFFPKGNKDGEEYGGG------RDLEDFVSFIN 127
           + A  + V   PTL  F  G       G        R+L D V  +N
Sbjct: 75  ETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPNLN 121

>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed Disulfide Complex Length = 109

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 29  TEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDL 88
           T   F+  + QD+  +V+FYA WCG  K +AP  EK +  +   D      LD D+  D+
Sbjct: 13  TASEFDSAIAQDKLVVVDFYATWCGPSKMIAPMIEKFSEQYPQAD---FYKLDVDELGDV 69
Query: 89  AEKYGVSGFPTLKFFPKGNKDGEEYGGG 116
           A+K  VS  PTL  F  G +  +  G  
Sbjct: 70  AQKNEVSAMPTLLLFKNGKEVAKVVGAN 97

>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces Cerevisiae Length = 111

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 40  DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
           D+  +V+F+A WCG CK +AP  EK A  ++   D     LD D+  D+A+K  VS  PT
Sbjct: 26  DKLVVVDFFATWCGPCKMIAPMIEKFAEQYS---DAAFYKLDVDEVSDVAQKAEVSSMPT 82
Query: 100 LKFFPKGNKD 109
           L F+ KG K+
Sbjct: 83  LIFY-KGGKE 91

>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces Cerevisiae Length = 104

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 40  DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
           D+  +V+F+A WCG CK +AP  EK A  ++   D     LD D+  D+A+K  VS  PT
Sbjct: 19  DKLVVVDFFATWCGPCKMIAPMIEKFAEQYS---DAAFYKLDVDEVSDVAQKAEVSSMPT 75
Query: 100 LKFFPKGNKD 109
           L F+ KG K+
Sbjct: 76  LIFY-KGGKE 84

>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g Mutant Length = 141

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 40  DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
           D+ A+V+FYA WCG CK +AP  E+++  +     + +  ++ DK  +LA  +G+ G PT
Sbjct: 51  DKPAIVDFYADWCGPCKMVAPILEELSKEYA--GKIYIYKVNVDKEPELARDFGIQGIPT 108
Query: 100 LKFFP 104
           + F P
Sbjct: 109 IWFVP 113

>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE MUTANT, REDUCED Form Length = 105

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 40  DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
           D+  +V+F A WCG CK + P +  ++  ++   +V+   +D D  +D+A +  V   PT
Sbjct: 20  DKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASESEVKSMPT 76
Query: 100 LKFFPKGNKDGEEYGGGRDLEDFVSFINE 128
            +FF KG K GE  G  +  E   + INE
Sbjct: 77  FQFFKKGQKVGEFSGANK--EKLEATINE 103

>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1 Oxidized With H2o2 Length = 105

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 40  DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
           D+  +V+F A WCG CK + P +  ++  ++   +V+   +D D  +D+A +  V   PT
Sbjct: 20  DKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASECEVKSMPT 76
Query: 100 LKFFPKGNKDGEEYGGGRDLEDFVSFINE 128
            +FF KG K GE  G  +  E   + INE
Sbjct: 77  FQFFKKGQKVGEFSGANK--EKLEATINE 103

>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5 Length = 122

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 21  LADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN 79
           L    + LT   F ++V Q +   +V+FYAPWCG C+N AP +E +A    ++  V    
Sbjct: 1   LPQASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLAR--MIKGKVRAGK 58
Query: 80  LDADKYKDLAEKYGVSGFPTLKFFP--KGNKD-GEEYGGGRDLEDFVSFI 126
           +D   Y    +K G+  +P++K +   +  K   EE    RD +   + I
Sbjct: 59  VDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALI 108

>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni Thioredoxin Pre-Protein At 1.7 Angstrom Length = 117

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 36  EVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS 95
           E  +++  +V+F+A WCG CK +AP +++++  +    D +   +D DK ++ A KY +S
Sbjct: 29  EQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY----DAIFVKVDVDKLEETARKYNIS 84
Query: 96  GFPTLKFFPKGNKDGEEYGGG-RDLEDFV 123
             PT      G K G+  G     +ED +
Sbjct: 85  AMPTFIAIKNGEKVGDVVGASIAKVEDMI 113

>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At 1.6 Angstrom Length = 108

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 36  EVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS 95
           E  +++  +V+F+A WCG CK +AP +++++  +    D +   +D DK ++ A KY +S
Sbjct: 20  EQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY----DAIFVKVDVDKLEETARKYNIS 75
Query: 96  GFPTLKFFPKGNKDGEEYGGG-RDLEDFV 123
             PT      G K G+  G     +ED +
Sbjct: 76  AMPTFIAIKNGEKVGDVVGASIAKVEDMI 104

>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus Thermophilus Length = 140

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
           VV   E  F +EV      LV+F+APWCG C+ ++P  E++A        VV  N+  D+
Sbjct: 35  VVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNV--DE 92
Query: 85  YKDLAEKYGVSGFPTLKFFPKG 106
           +  LA +YGV   PTL  F +G
Sbjct: 93  HPGLAARYGVRSVPTLVLFRRG 114

>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The Green Alga Chlamydomonas Reinhardtii Length = 107

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 28  LTEDNFEKEVGQDR-GALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 86
           + +D F+  V +     LV+F+APWCG C+ +AP  +++A  +  +D +    L+ D+  
Sbjct: 6   VNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEY--KDKLKCVKLNTDESP 63
Query: 87  DLAEKYGVSGFPTLKFFPKGNKDGEEYGGG 116
           ++A +YG+   PT+  F KG K  E   G 
Sbjct: 64  NVASEYGIRSIPTIMVF-KGGKKCETIIGA 92

>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 40  DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
           D+  +V+F A WCG CK + P +  ++  ++   +V+   +D D  +D+A +  V   PT
Sbjct: 20  DKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASEXEVKCMPT 76
Query: 100 LKFFPKGNKDGEEYGGGRDLEDFVSFINE 128
            +FF KG K GE  G  +  E   + INE
Sbjct: 77  FQFFKKGQKVGEFSGANK--EKLEATINE 103

>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 40  DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
           D+  +V+F A WCG CK + P +  ++  ++   +V+   +D D  +D+A +  V   PT
Sbjct: 20  DKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASECEVKCMPT 76
Query: 100 LKFFPKGNKDGEEYGGGRDLEDFVSFINE 128
            +FF KG K GE  G  +  E   + INE
Sbjct: 77  FQFFKKGQKVGEFSGANK--EKLEATINE 103

>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus Vannamei Length = 105

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 30  EDNFEKEVGQ--DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD 87
           +++F K++ +  ++  +++FYA WCG CK +AP  E+++ + +   DVV   +D D+ +D
Sbjct: 8   QEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMS---DVVFLKVDVDECED 64
Query: 88  LAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD 118
           +A+   ++  PT  F   G K     G   D
Sbjct: 65  IAQDNQIACMPTFLFMKNGQKLDSLSGANYD 95

>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From Sulfolobus Solfataricus Length = 110

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 28  LTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD 87
           L   NF++ + +++  +V+F+A WC  C  LAP  E++A  +     V    L+ ++ +D
Sbjct: 11  LNSKNFDEFITKNKIVVVDFWAEWCAPCLILAPVIEELANDYP---QVAFGKLNTEESQD 67
Query: 88  LAEKYGVSGFPTLKFFPKG 106
           +A +YG+   PT+ FF  G
Sbjct: 68  IAMRYGIMSLPTIMFFKNG 86

>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of Sulfolobus Solfataricus Trxa1 Provide Insights Into The Determinants Of Thioredoxin Fold Stability Length = 109

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 82
           D  +VLTE+NF++ +  ++  LV+ +A WC  C    P Y+KVA  +  +   V   L+ 
Sbjct: 4   DVTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKY--KGKAVFGRLNV 61
Query: 83  DKYKDLAEKYGVSGFPTLKFFPKG 106
           D+ + +A+KY V   PT   F  G
Sbjct: 62  DENQKIADKYSVLNIPTTLIFVNG 85

>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides Vulgatus Length = 136

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 7/78 (8%)
Query: 32  NFEKEVGQ-----DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 86
           NFEK   +     D+ A+V+FYA WCG CK +AP  +++A  +  +  +V+  +D +K +
Sbjct: 25  NFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEY--DGQIVIYKVDTEKEQ 82
Query: 87  DLAEKYGVSGFPTLKFFP 104
           +LA  +G+   P++ F P
Sbjct: 83  ELAGAFGIRSIPSILFIP 100

>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus Tokodaii Strain7 Length = 104

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
           V+ L   NF+  +     A+V+F+A WC  C  LAP  E++A  +     V    L++D+
Sbjct: 1   VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYP---QVGFGKLNSDE 57
Query: 85  YKDLAEKYGVSGFPTLKFFPKGNKDGE 111
             D+A +YGV   PT+ FF    KDGE
Sbjct: 58  NPDIAARYGVMSLPTVIFF----KDGE 80

>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1 Crystallized Using Ammonium Sulfate As Precipitant Length = 118

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 38  GQDRGALV--EFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS 95
           G+D G LV  +F A WCG C+ +AP + + A  F      +   +D D+ KD+AE Y V 
Sbjct: 24  GKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP---GAIFLKVDVDELKDVAEAYNVE 80
Query: 96  GFPTLKFFPKGNKDGEEYGGGRD 118
             PT  F   G K     GG +D
Sbjct: 81  AMPTFLFIKDGEKVDSVVGGRKD 103

>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures Of The Oxidized And Reduced States Of Human Thioredoxin Length = 105

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 40  DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
           D+  +V+F A WCG CK + P +  ++  ++   +V+   +D D  +D+A +  V   PT
Sbjct: 20  DKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDAQDVASEAEVKATPT 76
Query: 100 LKFFPKGNKDGEEYGGGRDLEDFVSFINE 128
            +FF KG K GE  G  +  E   + INE
Sbjct: 77  FQFFKKGQKVGEFSGANK--EKLEATINE 103

>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach Chloroplast (Long Form) Length = 124

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 9/118 (7%)
Query: 4   YQIWLALGTLTLFFVSALADDVVVLTEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPT 61
           Y + LALGT  +    A+   V  + +D F   V    D+  +++ +  WCG CK +AP 
Sbjct: 2   YYLELALGTQEM---EAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPK 58
Query: 62  YEKVAAAFTLEDDVVVANLDADK-YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD 118
           YEK+A  +    DV+   LD ++  K LA++ G+   PT K   + +  GE  G   D
Sbjct: 59  YEKLAEEYL---DVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYD 113

>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia Coli Thioredoxin Chimera: Insights Into Thermodynamic Stability Length = 107

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 40  DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
           D+  +V+F A WCG CK + P +  ++  ++   +V+   +D D  +D+A KYG+ G PT
Sbjct: 20  DKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDAQDVAPKYGIRGIPT 76
Query: 100 LKFFPKGNKDGEEYGG 115
           L  F  G     + G 
Sbjct: 77  LLLFKNGEVAATKVGA 92

>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced Recombinant Human Thioredoxin In Solution Length = 105

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 40  DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
           D+  +V+F A WCG CK + P +  ++  ++   +V+   +D D  +D+A +  V   PT
Sbjct: 20  DKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASECEVKCTPT 76
Query: 100 LKFFPKGNKDGEEYGGGRDLEDFVSFINE 128
            +FF KG K GE  G  +  E   + INE
Sbjct: 77  FQFFKKGQKVGEFSGANK--EKLEATINE 103

>pdb|2QC7|A Chain A, Crystal Structure Of The Protein-disulfide Isomerase Related Chaperone Erp29 Length = 240

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 91/190 (47%), Gaps = 24/190 (12%)
Query: 62  YEKVAAAFTLEDDVVVANLDADKYKD-----LAEKYGV--SGFPTLKFFPKGNKDGEEYG 114
           ++++A      DD++VA +    Y D     L+EKY +    +P    F    +DG    
Sbjct: 42  FKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKESYPVFYLF----RDG---- 93
Query: 115 GGRDLEDFVSFINE-KCGTSR---DGKGQLTSTAGIVASLDALVKEFVAASGDE-KKAVF 169
              D E+ V +    K G  +    G+G      G +   DAL  EF+ ASG E ++A+ 
Sbjct: 94  ---DFENPVPYTGAVKVGAIQRWLKGQGVYLGMPGCLPVYDALAGEFIRASGVEARQALL 150
Query: 170 SKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKS-ISAAKADEF 228
            + +  +  ++ +  +  + YLK+    +D+G D+   E+ R+ R+++K+ +S  K +E 
Sbjct: 151 KQGQDNLSSVKETQKKWAEQYLKIMGKILDQGEDFPASEMTRIARLIEKNKMSDGKKEEL 210
Query: 229 VLKKNILSTF 238
               NIL+ F
Sbjct: 211 QKSLNILTAF 220

>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp Length = 141

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 40  DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
           D+ A+V+FYA WCG CK +AP  E+++  +     + +  ++ DK  +LA  +G+   PT
Sbjct: 51  DKPAIVDFYADWCGPCKMVAPILEELSKEYA--GKIYIYKVNVDKEPELARDFGIQSIPT 108
Query: 100 LKFFP 104
           + F P
Sbjct: 109 IWFVP 113

>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form) Length = 105

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 40  DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
           D+  +V+F A WCG CK + P +  ++  ++   +V+   +D +  +D+A +  V   PT
Sbjct: 20  DKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVNDCQDVASECEVKCMPT 76
Query: 100 LKFFPKGNKDGEEYGGGRD 118
            +FF KG K GE  G  ++
Sbjct: 77  FQFFKKGQKVGEFSGANKE 95

>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin From Bacillus Subtilis Length = 104

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
           +V  T+ +F  E  +    L +F+APWCG CK +AP  E++     + D + +  +D D+
Sbjct: 3   IVKATDQSFSAETSEGV-VLADFWAPWCGPCKMIAPVLEELDQ--EMGDKLKIVKIDVDE 59
Query: 85  YKDLAEKYGVSGFPTLKFFPKGNKDGE 111
            ++ A KYGV   PTL       KDGE
Sbjct: 60  NQETAGKYGVMSIPTLLVL----KDGE 82

>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant Length = 118

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 9/107 (8%)
Query: 28  LTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 86
           +T+ +F  +V   ++  LV+F+A WCG  K +AP  E++A       D+ VA LD D   
Sbjct: 14  VTDASFATDVLSSNKPVLVDFWATWCGPSKMVAPVLEEIATERA--TDLTVAKLDVDTNP 71
Query: 87  DLAEKYGVSGFPTLKFFPKGNKDGEEYGGG------RDLEDFVSFIN 127
           + A  + V   PTL  F  G       G        R+L D V  +N
Sbjct: 72  ETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPNLN 118

>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant Length = 106

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
           +V +T+ +F+ +V +    LV+F+A WCG CK +AP  E++AA +  + D++   LD D+
Sbjct: 5   IVKVTDADFDSKV-ESGVQLVDFWATWCGSCKMIAPVLEELAADYEGKADIL--KLDVDE 61
Query: 85  YKDLAEKYGVSGFPTLKFFPKGN 107
               A KY V   PTL  F  G 
Sbjct: 62  NPSTAAKYEVMSIPTLIVFKDGQ 84

>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant Length = 107

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
           +V +T+ +F+ +V +    LV+F+A WCG CK +AP  E++AA +  + D++   LD D+
Sbjct: 6   IVKVTDADFDSKV-ESGVQLVDFWATWCGTCKMIAPVLEELAADYEGKADIL--KLDVDE 62
Query: 85  YKDLAEKYGVSGFPTLKFFPKGN 107
               A KY V   PTL  F  G 
Sbjct: 63  NPSTAAKYEVMSIPTLIVFKDGQ 85

>pdb|1THX|A Chain A, Thioredoxin-2 Length = 115

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 4/110 (3%)
Query: 19  SALADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVV 77
           +A++  V+ +T+  FE EV + ++  LV F+A WCG C+ ++P      AA T  D + V
Sbjct: 3   TAMSKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLIN--LAANTYSDRLKV 60
Query: 78  ANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN 127
             L+ D      +KY V G P L+   KG +  +   G    +  +SF++
Sbjct: 61  VKLEIDPNPTTVKKYKVEGVPALRLV-KGEQILDSTEGVISKDKLLSFLD 109

>pdb|2O7K|A Chain A, S. Aureus Thioredoxin Length = 107

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 7/87 (8%)
Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
           +V +T+ +F+ +V +    LV+F+A WCG CK +AP  E++AA +  + D++   LD D+
Sbjct: 6   IVKVTDADFDSKV-ESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADIL--KLDVDE 62
Query: 85  YKDLAEKYGVSGFPTLKFFPKGNKDGE 111
               A KY V   PTL  F    KDG+
Sbjct: 63  NPSTAAKYEVMSIPTLIVF----KDGQ 85

>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces Cerevisiae In Complex With Thioredoxin Trx2 Length = 112

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 40  DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
           D+  +V+F+A WCG  K +AP  EK A  ++   D     LD D+  D+A+K  VS  PT
Sbjct: 27  DKLVVVDFFATWCGPSKMIAPMIEKFAEQYS---DAAFYKLDVDEVSDVAQKAEVSSMPT 83
Query: 100 LKFFPKGNKD 109
           L F+ KG K+
Sbjct: 84  LIFY-KGGKE 92

>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In Complex With Trx2 Length = 104

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 40  DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
           D+  +V+F+A WCG  K +AP  EK A  ++   D     LD D+  D+A+K  VS  PT
Sbjct: 19  DKLVVVDFFATWCGPSKMIAPMIEKFAEQYS---DAAFYKLDVDEVSDVAQKAEVSSMPT 75
Query: 100 LKFFPKGNKD 109
           L F+ KG K+
Sbjct: 76  LIFY-KGGKE 84

>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2 Length = 119

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Query: 34  EKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYG 93
           ++ V  +   +V+F+A WCG CK L P  EK+ A       VV+A +D D + DLA +Y 
Sbjct: 25  DRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVA--KQHGKVVMAKVDIDDHTDLAIEYE 82
Query: 94  VSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG 131
           VS  PT+     G+   +++ G +D +   +F+ +  G
Sbjct: 83  VSAVPTVLAMKNGDV-VDKFVGIKDEDQLEAFLKKLIG 119

>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing Cadmium Chloride Bound To The Active Site Length = 105

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 40  DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
           D+  +V+F A WCG  K + P +  ++  ++   +V+   +D D  +D+A +  V   PT
Sbjct: 20  DKLVVVDFSATWCGPSKMIKPFFHSLSEKYS---NVIFLEVDVDDSQDVASESEVKSMPT 76
Query: 100 LKFFPKGNKDGEEYGGGRDLEDFVSFINE 128
            +FF KG K GE  G  +  E   + INE
Sbjct: 77  FQFFKKGQKVGEFSGANK--EKLEATINE 103

>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A Cppc Active Site Variant Length = 113

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 30  EDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLA 89
           +++FEK  G  +  +V+F A WC  CK +AP + ++A  F    +V    +D D+ K +A
Sbjct: 16  KEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP---NVTFLKVDVDELKAVA 72
Query: 90  EKYGVSGFPTLKFFPKGNKDGEEYGGGRD 118
           E++ V   PT  F   G    +  G  +D
Sbjct: 73  EEWNVEAMPTFIFLKDGKLVDKTVGADKD 101

>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach Chloroplast (Reduced Form) Length = 105

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 43  ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 102
            +V+F+APWCG CK +AP  +++A  ++    + V  L+ D+   +A +Y +   PT+ F
Sbjct: 21  VMVDFWAPWCGPCKLIAPVIDELAKEYS--GKIAVYKLNTDEAPGIATQYNIRSIPTVLF 78
Query: 103 FPKGNK 108
           F  G +
Sbjct: 79  FKNGER 84

>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized Form Length = 104

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 43  ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 102
            +V+F+APWCG CK +AP  +++A  ++    + V  L+ D+   +A +Y +   PT+ F
Sbjct: 20  VMVDFWAPWCGPCKLIAPVIDELAKEYS--GKIAVYKLNTDEAPGIATQYNIRSIPTVLF 77
Query: 103 FPKGNK 108
           F  G +
Sbjct: 78  FKNGER 83

>pdb|3H79|A Chain A, Crystal Structure Of Trypanosoma Cruzi Thioredoxin-like Hypothetical Protein Q4dv70 Length = 127

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 25/117 (21%)
Query: 25  VVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDV-------- 75
           VV LT++ F+  V   ++   V +Y PW  H            AA  L DD+        
Sbjct: 17  VVELTDETFDSIVMDPEKDVFVLYYVPWSRHS----------VAAMRLWDDLSMSQSQKR 66
Query: 76  -----VVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGE-EYGGGRDLEDFVSFI 126
                V A +D +KY D+ E+  VSGFPT++++ + +K    EY G R L    SF+
Sbjct: 67  NHLTFVAARIDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFV 123

>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin Reductase-Thioredoxin Complex Length = 116

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 40  DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
           D+  +V+F A WCG  K + P +  ++  ++   +V+   +D D  +D+A +  V   PT
Sbjct: 31  DKLVVVDFSATWCGPSKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASECEVKSMPT 87
Query: 100 LKFFPKGNKDGEEYGGGRDLEDFVSFINE 128
            +FF KG K GE  G  +  E   + INE
Sbjct: 88  FQFFKKGQKVGEFSGANK--EKLEATINE 114

>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r Length = 105

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 40  DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
           D+  +V+F A WCG  K + P +  ++  ++   +V+   +D D  +D+A +  V   PT
Sbjct: 20  DKLVVVDFSATWCGPSKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASECEVKRMPT 76
Query: 100 LKFFPKGNKDGEEYGGGRDLEDFVSFINE 128
            +FF KG K GE  G  +  E   + INE
Sbjct: 77  FQFFKKGQKVGEFSGANK--EKLEATINE 103

>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide Intermediate Between Mutant Human Thioredoxin And A 13 Residue Peptide Comprising Its Target Site In Human Nfkb Length = 105

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 40  DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
           D+  +V+F A WCG  K + P +  ++  ++   +V+   +D D  +D+A +  V   PT
Sbjct: 20  DKLVVVDFSATWCGPAKMIKPFFHSLSEKYS---NVIFLEVDVDDAQDVASEAEVKATPT 76
Query: 100 LKFFPKGNKDGEEYGGGRDLEDFVSFINE 128
            +FF KG K GE  G  +  E   + INE
Sbjct: 77  FQFFKKGQKVGEFSGANK--EKLEATINE 103

>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach Chloroplast (Short Form) Length = 112

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 18  VSALADDVVVLTEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDV 75
           + A+   V  + +D F   V    D+  +++ +  WCG CK +AP YEK+A  +    DV
Sbjct: 1   MEAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL---DV 57
Query: 76  VVANLDADK-YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD 118
           +   LD ++  K LA++ G+   PT K   + +  GE  G   D
Sbjct: 58  IFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYD 101

>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide Dimers That Resemble Enzyme-substrate Reaction Intermediate Length = 112

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
           +V  T+ +F  E  +    L +F+APWCG  K +AP  E++     + D + +  +D D+
Sbjct: 3   IVKATDQSFSAETSEGV-VLADFWAPWCGPSKMIAPVLEELDQ--EMGDKLKIVKIDVDE 59
Query: 85  YKDLAEKYGVSGFPTLKFFPKGNKDGE 111
            ++ A KYGV   PTL       KDGE
Sbjct: 60  NQETAGKYGVMSIPTLLVL----KDGE 82

>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex Length = 104

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
           +V  T+ +F  E  +    L +F+APWCG  K +AP  E++     + D + +  +D D+
Sbjct: 3   IVKATDQSFSAETSEGV-VLADFWAPWCGPSKMIAPVLEELDQ--EMGDKLKIVKIDVDE 59
Query: 85  YKDLAEKYGVSGFPTLKFFPKGNKDGE 111
            ++ A KYGV   PTL       KDGE
Sbjct: 60  NQETAGKYGVMSIPTLLVL----KDGE 82

>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa Length = 130

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 29  TEDNFEKEVGQDRGA----LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
            +D F+ ++ + + A    +++F A WCG C+ +AP + + A  F      V   +D D+
Sbjct: 21  NKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP---GAVFLKVDVDE 77
Query: 85  YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD 118
            K++AEKY V   PT  F   G +  +  G  +D
Sbjct: 78  LKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKD 111

>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT Length = 107

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
           +V +T+ +F+ +V +    LV+F+A WCG  K +AP  E++AA +  + D++   LD D+
Sbjct: 6   IVKVTDADFDSKV-ESGVQLVDFWATWCGTSKMIAPVLEELAADYEGKADIL--KLDVDE 62
Query: 85  YKDLAEKYGVSGFPTLKFFPKGN 107
               A KY V   PTL  F  G 
Sbjct: 63  NPSTAAKYEVMSIPTLIVFKDGQ 85

>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The Oxidized State Length = 122

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 44  LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 103
           +++F A WCG C+ +AP +  +A  F    + V   +D D+ K +AE++ V   PT  F 
Sbjct: 38  VIDFTASWCGPCRIMAPVFADLAKKFP---NAVFLKVDVDELKPIAEQFSVEAMPTFLFM 94
Query: 104 PKGNKDGEEYGGGRD 118
            +G+      G  ++
Sbjct: 95  KEGDVKDRVVGAIKE 109

>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1 Length = 244

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 22  ADDVVVLTEDNFEKEVGQDRGAL-VEFYAPWCGHCKNLAPTYEKVAAAF-TLEDDVVVAN 79
           +D + +L  D     V   R A  VEF+A WCGHC   APT+  +A         + +A 
Sbjct: 11  SDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAA 70
Query: 80  LDADKYKD--LAEKYGVSGFPTLKFFPKGNKDG 110
           LD  +  +  +   + + GFPT++FF     +G
Sbjct: 71  LDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNG 103

>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between Ferredoxin: Thioredoxin Reductase And Thioredoxin M Length = 106

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 44  LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 103
           +V+F+APWCG  K +AP  +++A  ++    + V  L+ D+   +A +Y +   PT+ FF
Sbjct: 22  MVDFWAPWCGPSKLIAPVIDELAKEYS--GKIAVYKLNTDEAPGIATQYNIRSIPTVLFF 79
Query: 104 PKGNK 108
             G +
Sbjct: 80  KNGER 84

>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From Saccharomyces Cerevisiae Length = 114

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 28  LTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD 87
           LTE  F   + Q+   +++FYA WCG CK + P   K+  A+    DV     D D+  D
Sbjct: 20  LTE--FRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYP---DVRFVKCDVDESPD 74
Query: 88  LAEKYGVSGFPTLKFFPKGNKDGEEYG 114
           +A++  V+  PT        KDG+  G
Sbjct: 75  IAKECEVTAMPTFVL----GKDGQLIG 97

>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin Length = 118

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 44  LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 103
           LV+F+A WCG C+ L      +A A     DV    +D DK  + A+ YGVS  P L FF
Sbjct: 27  LVDFFATWCGPCQRLGQILPSIAEA---NKDVTFIKVDVDKNGNAADAYGVSSIPAL-FF 82
Query: 104 PKGNKDGEEYGGGRDLEDFV 123
            K  K+G E    + L+ FV
Sbjct: 83  VK--KEGNEI---KTLDQFV 97

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 6/111 (5%)
Query: 16  FFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDV 75
           F   ++   V  L   NF          LV+F+APW    + L P   K  A+  L   +
Sbjct: 433 FAKESVNSHVTTLGPQNFP--ASDKEPWLVDFFAPWSPPSRALLPELRK--ASTLLYGQL 488
Query: 76  VVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 126
            V  LD   ++ L   Y +  +PT   F + +    EY G    E  + FI
Sbjct: 489 KVGTLDCTIHEGLCNMYNIQAYPTTVVFNQSSI--HEYEGHHSAEQILEFI 537

>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a Mutant Length = 106

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 7/87 (8%)
Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
           +V +T+ +F+ +V +    LV+F+A  CG CK +AP  E++AA +  + D++   LD D+
Sbjct: 5   IVKVTDADFDSKV-ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADIL--KLDVDE 61
Query: 85  YKDLAEKYGVSGFPTLKFFPKGNKDGE 111
               A KY V   PTL  F    KDG+
Sbjct: 62  NPSTAAKYEVMSIPTLIVF----KDGQ 84

>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN DISULFIDE Length = 519

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 22  ADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVA---AAFTLEDDVVV 77
           +D + +L  D+    V G      VEF+A WCGH    APT++++A     +    ++ V
Sbjct: 11  SDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAV 70
Query: 78  ANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDG 110
            +   +    +  ++ ++GFPT++FF    K+G
Sbjct: 71  LDCAEETNSAVCREFNIAGFPTVRFFQAFTKNG 103

>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By Ser And Cys 35 Replaced By Ser Length = 105

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 40  DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
           D+  +V+F A W G  K + P +  ++  ++   +V+   +D D  +D+A +  V   PT
Sbjct: 20  DKLVVVDFSATWSGPSKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASECEVKCMPT 76
Query: 100 LKFFPKGNKDGEEYGGGRDLEDFVSFINE 128
            +FF KG K GE  G  +  E   + INE
Sbjct: 77  FQFFKKGQKVGEFSGANK--EKLEATINE 103

>pdb|1G7D|A Chain A, Nmr Structure Of Erp29 C-Domain Length = 106

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 145 GIVASLDALVKEFVAASGDE-KKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSD 203
           G + + DAL  +F+ AS  E ++A+  + + G+  ++ +  +    YLK+    +D+G D
Sbjct: 2   GCLPAYDALAGQFIEASSREARQAILKQGQDGLSGVKETDKKWASQYLKIMGKILDQGED 61
Query: 204 YAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 238
           +   E+ R+ ++++  +S  K +E     NIL+ F
Sbjct: 62  FPASELARISKLIENKMSEGKKEELQRSLNILTAF 96

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Query: 24  DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
           +++ L    F+  V       V FY+P C HC +LAPT+ + A        +   N   D
Sbjct: 98  EIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDD 157
Query: 84  KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSF 125
           +   L    GV+ +P+L  F  G     +Y G R  E  V+F
Sbjct: 158 RM--LCRMKGVNSYPSLFIFRSGMA-AVKYNGDRSKESLVAF 196

>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis Length = 148

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 5/112 (4%)
Query: 24  DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
           +V+  T +  +K +  D   +++F+APWCG C++ AP + + AA    +   V  N +A+
Sbjct: 39  EVINATAETLDKLLQDDLPXVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAE 98
Query: 84  KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRD 135
               L+ ++ +   PT+  +  G K  +   G      F ++++E+   SRD
Sbjct: 99  PA--LSTRFRIRSIPTIXLYRNG-KXIDXLNGAVPKAPFDNWLDEQ--LSRD 145

>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between Ferredoxin: Thioredoxin Reductase And Thioredoxin F Length = 111

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 40  DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-YKDLAEKYGVSGFP 98
           D+  +++ +  WCG  K +AP YEK+A  +    DV+   LD ++  K LA++ G+   P
Sbjct: 24  DKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL---DVIFLKLDCNQENKTLAKELGIRVVP 80
Query: 99  TLKFFPKGNKDGEEYGGGRD 118
           T K   + +  GE  G   D
Sbjct: 81  TFKILKENSVVGEVTGAKYD 100

>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei Length = 140

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 41  RGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL 100
           +  +V FY+P C +CK   P +E+ A  +      V   ++       AEKYGV G PT 
Sbjct: 25  KPVVVXFYSPACPYCKAXEPYFEEYAKEYG--SSAVFGRINIATNPWTAEKYGVQGTPTF 82
Query: 101 KFFPKGNKDGEEYG 114
           KFF  G    E+ G
Sbjct: 83  KFFCHGRPVWEQVG 96

>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin Length = 104

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 28  LTEDNFEKEVGQDRGALV-EFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 86
           L++ +F+ EV Q    ++  F   WC  CK + PT+E++A+   +E D+  A +DA+  +
Sbjct: 4   LSDSDFQLEVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMASQ--MEGDIRFAYMDAEDAE 61
Query: 87  DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN 127
               +  +   P+L  F  G    E + G  +  D   +IN
Sbjct: 62  KTMAELNIRTLPSLALFVDG-MIREVFSGTMNKSDLRYWIN 101

>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium Length = 287

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFYAPWC---GHCKNLAPTYEKVAAAFTLEDDVVVAN 79
            ++V + E N ++ + Q     V FY  W     HC  L P  E +AA +      ++A 
Sbjct: 7   QNIVNINESNLQQTLEQSXTTPVLFYF-WSERSQHCLQLTPVLESLAAQY--HGQFILAK 63
Query: 80  LDADKYKDLAEKYGVSGFPTLKFFPKGNK-DG 110
           LD D  + +A ++G+   PT+  F  G   DG
Sbjct: 64  LDCDAEQXIAAQFGLRAIPTVYLFQNGQPVDG 95

>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin Length = 105

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 40  DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
           D+  +V+F A WCG CK + P +  ++  ++   +V+   +D D  +D+A +  V   PT
Sbjct: 20  DKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDXQDVASEXEVKCMPT 76
Query: 100 LKFFPKGNKDGEEYGGGRD 118
            +FF KG K GE  G  ++
Sbjct: 77  FQFFKKGQKVGEFSGANKE 95

>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With The Target Protein Basi Length = 125

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 44  LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 103
           +++F A WCG  + +AP +  +A  F    + V   +D D+ K +AE++ V   PT  F 
Sbjct: 41  VIDFTASWCGPSRIMAPVFADLAKKFP---NAVFLKVDVDELKPIAEQFSVEAMPTFLFM 97
Query: 104 PKGN 107
            +G+
Sbjct: 98  KEGD 101

>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn Length = 287

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFYAPWC---GHCKNLAPTYEKVAAAFTLEDDVVVAN 79
           +++V + E N ++ + Q     V FY  W     HC  L P  E +AA +      ++A 
Sbjct: 7   ENIVNINESNLQQVLEQSMTTPVLFYF-WSERSQHCLQLTPILESLAAQYN--GQFILAK 63
Query: 80  LDADKYKDLAEKYGVSGFPTLKFFPKGNK-DG 110
           LD D  + +A ++G+   PT+  F  G   DG
Sbjct: 64  LDCDAEQMIAAQFGLRAIPTVYLFQNGQPVDG 95

>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis Thaliana Length = 124

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 44  LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 103
           +V+F A WCG C+ +AP +  +A       +V+   +D D+ K +A  + +   PT  F 
Sbjct: 42  VVDFTASWCGPCRFIAPFFADLAKKLP---NVLFLKVDTDELKSVASDWAIQAMPTFMFL 98
Query: 104 PKGNKDGEEYGGGRD 118
            +G    +  G  +D
Sbjct: 99  KEGKILDKVVGAKKD 113

>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile Acetobacter Aceti Length = 107

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 22  ADDVVVLTEDNFEKEVGQDRG-ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           ++  + +++ +F+++V +  G  LV+F+A WCG CK + P   ++   F     V VA +
Sbjct: 1   SEHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFA--GKVTVAKV 58
Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKG 106
           + D   +    Y V   PTL     G
Sbjct: 59  NIDDNPETPNAYQVRSIPTLMLVRDG 84

>pdb|3HDC|A Chain A, The Crystal Structure Of Thioredoxin Protein From Geobacter Metallireducens Length = 158

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 8/124 (6%)
Query: 14  TLFFVSALADDVVVLTEDNFEKEVGQDRG--ALVEFYAPWCGHCKNLAPTYEKVAAAFTL 71
            L    ALA +  + T     K + Q RG   LV F+A WC +C++  P+ +++  +F  
Sbjct: 13  PLVRTGALAPNFKLPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEXPSXDRLVKSFPK 72
Query: 72  EDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG 131
            D VV+A    +  K   EKY  +   +  F        ++  G   L D  +FI ++ G
Sbjct: 73  GDLVVLA---VNVEKRFPEKYRRAPV-SFNFLSDATGQVQQRYGANRLPD--TFIVDRKG 126
Query: 132 TSRD 135
             R 
Sbjct: 127 IIRQ 130

>pdb|2DJ0|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human Thioredoxin-Related Transmembrane Protein 2 Length = 137

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 44  LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 103
           +VEF+A W   C++ AP Y  ++  +     +    +D  +Y D++ +Y VS  P  K  
Sbjct: 30  IVEFFANWSNDCQSFAPIYADLSLKYNCT-GLNFGKVDVGRYTDVSTRYKVSTSPLTKQL 88
Query: 104 P 104
           P
Sbjct: 89  P 89

>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei Brucei Length = 125

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 27  VLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 86
           V + + F   + +D   +  F A WCG CK +    EK+A  F     V  A +DAD   
Sbjct: 24  VYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP---TVKFAKVDADNNS 80
Query: 87  DLAEKYGVSGFPTLKFFPKGNKDGEEYGGG 116
           ++  K  V   PT      G   G   G  
Sbjct: 81  EIVSKCRVLQLPTFIIARSGKMLGHVIGAN 110

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	239
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	4e-69
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	1e-63
1mek_A	120	Protein disulfide isomerase; electron transport, r	2e-53
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	6e-53
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	3e-51
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	9e-51
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	4e-50
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	9e-50
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	1e-49
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	4e-49
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	6e-46
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	2e-44
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	3e-39
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	3e-43
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	1e-41
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	3e-37
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	1e-06
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	3e-41
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	1e-09
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	9e-41
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	6e-16
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	3e-39
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	7e-13
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	1e-38
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	1e-22
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	5e-37
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	1e-15
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	1e-36
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	6e-34
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	3e-36
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	2e-34
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	7e-31
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	2e-27
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	9e-24
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	3e-12
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	4e-36
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	9e-34
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	2e-05
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	2e-33
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	4e-09
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	1e-24
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	2e-24
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	1e-23
2l57_A	126	Uncharacterized protein; structural genomics, unkn	1e-23
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	3e-23
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	7e-23
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	4e-22
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	8e-23
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	3e-22
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	4e-22
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	4e-22
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	4e-22
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	5e-22
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	1e-21
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	2e-21
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	4e-21
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	6e-21
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	6e-21
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	7e-21
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	7e-21
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	9e-21
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	1e-20
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	1e-20
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	1e-20
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	1e-20
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	1e-20
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	2e-20
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	2e-20
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	2e-20
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	2e-20
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	3e-20
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	3e-20
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	3e-20
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	3e-20
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	3e-20
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	3e-20
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	4e-20
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	5e-20
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	5e-20
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	5e-20
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	6e-20
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	7e-20
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	1e-19
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	1e-19
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	1e-19
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	2e-19
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	3e-19
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	3e-19
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	3e-19
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	4e-19
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	4e-19
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	6e-19
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	2e-18
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	2e-18
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	4e-18
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	7e-18
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	8e-18
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	5e-06
2kuc_A	130	Putative disulphide-isomerase; structural genomics	8e-18
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	9e-18
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	1e-17
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	2e-17
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	2e-17
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	2e-17
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	4e-17
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	1e-16
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	1e-15
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	5e-13
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	9e-13
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	1e-12
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	3e-12
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	9e-12
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	1e-11
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	1e-10
2qsi_A	137	Putative hydrogenase expression/formation protein;	6e-09
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	9e-09
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	1e-08
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	3e-08
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	2e-07
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	4e-07
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	9e-07
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	2e-06
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	7e-06
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	1e-05
2in3_A	216	Hypothetical protein; DSBA family, FRNE-like subfa	2e-05
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	4e-05
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	5e-05
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	5e-05
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	6e-05
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	7e-05
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	9e-05
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	9e-05
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	1e-04
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	1e-04
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	2e-04
4evm_A	138	Thioredoxin family protein; structural genomics, n	2e-04
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	4e-04
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	6e-04
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	6e-04
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	7e-04

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A Length = 240

 Score =  211 bits (539), Expect = 4e-69
 Identities = 50/227 (22%), Positives = 100/227 (44%), Gaps = 20/227 (8%)

Query: 22  ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 81
               + L    F K + + +  LV+F   +    K     ++++A      DD++VA + 
Sbjct: 4   TKGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVG 61

Query: 82  ADKY-----KDLAEKYGV--SGFPTLKFFPKGNKDG-EEYGGGRDLEDFVSFINEKCGTS 133
              Y      +L+EKY +    +P    F  G+ +    Y G   +     ++       
Sbjct: 62  ISDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKG----- 116

Query: 134 RDGKGQLTSTAGIVASLDALVKEFVAASG-DEKKAVFSKIERGVEVLEGSTARHGKIYLK 192
              +G      G +   DAL  EF+ ASG + ++A+  + +  +  ++ +  +  + YLK
Sbjct: 117 ---QGVYLGMPGCLPVYDALAGEFIRASGVEARQALLKQGQDNLSSVKETQKKWAEQYLK 173

Query: 193 VAKNYMDKGSDYAKKEIDRLQRMLDKS-ISAAKADEFVLKKNILSTF 238
           +    +D+G D+   E+ R+ R+++K+ +S  K +E     NIL+ F
Sbjct: 174 IMGKILDQGEDFPASEMTRIARLIEKNKMSDGKKEELQKSLNILTAF 220

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A Length = 248

 Score =  197 bits (503), Expect = 1e-63
 Identities = 45/234 (19%), Positives = 90/234 (38%), Gaps = 20/234 (8%)

Query: 16  FFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVA-AAFTLEDD 74
              S      V L E +FEK V +   ++V+F              +   + +A     D
Sbjct: 9   HHGSVTCTGCVDLDELSFEKTVERFPYSVVKFDIASP--YGEKHEAFTAFSKSAHKATKD 66

Query: 75  VVVANLDADKY-----KDLAEKYGV--SGFPTLKFFPKGNKDGEE--YGGGRDLEDFVSF 125
           +++A +    Y     K L ++Y V    FP++  F     +  +        L++  +F
Sbjct: 67  LLIATVGVKDYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAF 126

Query: 126 INEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTAR 185
           ++                 G +   + ++K +      E+  +  K++   E L     +
Sbjct: 127 VSANTPL-------YIGRDGCIKEFNEVLKNYANIPDAEQLKLIEKLQAKQEQLTDPEQQ 179

Query: 186 -HGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 238
            + + YL   +   + G D+ ++E  RL R+    ++ AK +E + K NIL  F
Sbjct: 180 QNARAYLIYMRKIHEVGYDFLEEETKRLLRLKAGKVTEAKKEELLRKLNILEVF 233

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 Length = 120

 Score =  167 bits (424), Expect = 2e-53
 Identities = 49/113 (43%), Positives = 73/113 (64%), Gaps = 2/113 (1%)

Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLED-DVVVANLD 81
           D V+VL + NF + +   +  LVEFYAPWCGHCK LAP Y K A     E  ++ +A +D
Sbjct: 7   DHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVD 66

Query: 82  ADKYKDLAEKYGVSGFPTLKFFPKGNKDG-EEYGGGRDLEDFVSFINEKCGTS 133
           A +  DLA++YGV G+PT+KFF  G+    +EY  GR+ +D V+++ ++ G +
Sbjct: 67  ATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGPA 119

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 140

 Score =  166 bits (423), Expect = 6e-53
 Identities = 47/122 (38%), Positives = 65/122 (53%), Gaps = 3/122 (2%)

Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAF-TLEDDVVVANLD 81
           + V VL + NF+  V      L+EFYAPWCGHCK  AP YEK+A+     +  + VA +D
Sbjct: 17  NGVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKID 76

Query: 82  ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLT 141
           A     LA K+ VSG+PT+K   KG     +Y G R  E+ V+ + E          ++T
Sbjct: 77  ATSASMLASKFDVSGYPTIKILKKGQA--VDYDGSRTQEEIVAKVREVSQPDWTPPPEVT 134

Query: 142 ST 143
           S 
Sbjct: 135 SG 136

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 133

 Score =  162 bits (412), Expect = 3e-51
 Identities = 45/123 (36%), Positives = 64/123 (52%), Gaps = 3/123 (2%)

Query: 22  ADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           +  V V+    F+  V    +  L+EFYAPWCGHCK L P Y  +   +  + D+V+A +
Sbjct: 6   SGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKM 65

Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKGNKDG--EEYGGGRDLEDFVSFINEKCGTSRDGKG 138
           DA       ++Y V GFPT+ F P G+K    +  GG RDLE    FI+E        K 
Sbjct: 66  DATANDITNDQYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKRSRTKE 125

Query: 139 QLT 141
           +L+
Sbjct: 126 ELS 128

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score =  161 bits (408), Expect = 9e-51
 Identities = 52/109 (47%), Positives = 66/109 (60%), Gaps = 3/109 (2%)

Query: 22  ADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           +DDV+ LT  NF +EV Q D   LVEFYAPWCGHC+ L P ++K A A  L+D V V  +
Sbjct: 16  SDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATA--LKDVVKVGAV 73

Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK 129
           +ADK++ L  +YGV GFPT+K F       E+Y GGR  E  V      
Sbjct: 74  NADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSA 122

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A Length = 111

 Score =  158 bits (402), Expect = 4e-50
 Identities = 43/110 (39%), Positives = 64/110 (58%), Gaps = 3/110 (2%)

Query: 21  LADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAA-FTLEDDVVVAN 79
           L   V+ LTE+NF+  + +     ++FYAPWCGHCK LAPT+E+++   F     V +A 
Sbjct: 3   LGSTVLALTENNFDDTIAEGI-TFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAE 61

Query: 80  LDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK 129
           +D    +++  KY V G+PTL  F  G K   E+ GGRDL+    F+  +
Sbjct: 62  VDCTAERNICSKYSVRGYPTLLLFRGG-KKVSEHSGGRDLDSLHRFVLSQ 110

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 133

 Score =  158 bits (401), Expect = 9e-50
 Identities = 48/118 (40%), Positives = 67/118 (56%), Gaps = 4/118 (3%)

Query: 19  SALADDVVVLTEDNFEKEVGQDRG-ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDD--V 75
           S  + DV+ LT+D+F+K V       +VEFYAPWCGHCKNL P +   A+    +    V
Sbjct: 3   SGSSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKV 62

Query: 76  VVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS 133
            +A +DA   + LA +YG+ GFPT+K F KG +   +Y GGR   D VS   +    +
Sbjct: 63  KLAAVDATVNQVLASRYGIRGFPTIKIFQKG-ESPVDYDGGRTRSDIVSRALDLFSDN 119

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score =  157 bits (400), Expect = 1e-49
 Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 5/115 (4%)

Query: 19  SALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA 78
           S  + +V V+T++N+ + +  D   ++EFYAPWC  C+NL P +E  A     + +V +A
Sbjct: 3   SGSSGNVRVITDENWRELLEGD--WMIEFYAPWCPACQNLQPEWESFAEWGE-DLEVNIA 59

Query: 79  NLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS 133
            +D  +   L+ ++ ++  PT+     G      Y G R  +DF++FI++K   S
Sbjct: 60  KVDVTEQPGLSGRFIINALPTIYHCKDGEF--RRYQGPRTKKDFINFISDKEWKS 112

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} Length = 127

 Score =  156 bits (397), Expect = 4e-49
 Identities = 32/111 (28%), Positives = 58/111 (52%), Gaps = 5/111 (4%)

Query: 24  DVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDD---VVVAN 79
            VV LT++ F+  V   ++   V +Y PW  H       ++ ++ + + + +    V A 
Sbjct: 16  RVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAAR 75

Query: 80  LDADKYKDLAEKYGVSGFPTLKFFPKGNKD-GEEYGGGRDLEDFVSFINEK 129
           +D +KY D+ E+  VSGFPT++++ + +K    EY G R L    SF+ + 
Sbjct: 76  IDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQN 126

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} Length = 122

 Score =  148 bits (375), Expect = 6e-46
 Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 6/120 (5%)

Query: 21  LADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN 79
           L    + LT   F ++V Q     +V+FYAPWCG C+N AP +E +A    ++  V    
Sbjct: 1   LPQASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARM--IKGKVRAGK 58

Query: 80  LDADKYKDLAEKYGVSGFPTLKFFPKGNKDG---EEYGGGRDLEDFVSFINEKCGTSRDG 136
           +D   Y    +K G+  +P++K +          EE    RD +   + I  K  T +  
Sbjct: 59  VDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQSQ 118

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score =  148 bits (375), Expect = 2e-44
 Identities = 50/153 (32%), Positives = 73/153 (47%), Gaps = 10/153 (6%)

Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAF-TLEDDVVVANLD 81
           + V+VL + NF+  V      L+EFYAPWCGHCK  AP YEK+A      +  + VA +D
Sbjct: 15  NGVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKID 74

Query: 82  ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLT 141
           A     LA ++ VSG+PT+K   KG     +Y G R  E+ V+ + E          ++T
Sbjct: 75  ATSASVLASRFDVSGYPTIKILKKGQA--VDYEGSRTQEEIVAKVREVSQPDWTPPPEVT 132

Query: 142 ST-------AGIVASLDALVKEFVAASGDEKKA 167
                      +  +   LV+ +    G  KK 
Sbjct: 133 LVLTKENFDEVVNDADIILVEFYAPWCGHCKKL 165

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score =  134 bits (340), Expect = 3e-39
 Identities = 48/112 (42%), Positives = 68/112 (60%), Gaps = 3/112 (2%)

Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFT-LEDDVVVANLD 81
           +  +VLT++NF++ V      LVEFYAPWCGHCK LAP YEK A   +     + +A +D
Sbjct: 130 EVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVD 189

Query: 82  ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS 133
           A    DLA+++ VSG+PTLK F KG     +Y G R+    V ++ E+ G +
Sbjct: 190 ATAETDLAKRFDVSGYPTLKIFRKGRP--YDYNGPREKYGIVDYMIEQSGAA 239

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A Length = 121

 Score =  141 bits (357), Expect = 3e-43
 Identities = 44/116 (37%), Positives = 60/116 (51%), Gaps = 8/116 (6%)

Query: 23  DDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFT---LEDDVVVA 78
             V V+   N+ + V    +  L+EFYAPWCGHCK LAP YE++ A +     +D VV+A
Sbjct: 7   GPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIA 66

Query: 79  NLDADKYKDLAEKYGVSGFPTLKFFPKGNKDG-EEYGGGRDLEDFVSFINEKCGTS 133
            +DA           + GFPT+K +P G K     Y G R +ED + FI E     
Sbjct: 67  KVDATAND---VPDEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKYK 119

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score =  147 bits (371), Expect = 1e-41
 Identities = 48/192 (25%), Positives = 81/192 (42%), Gaps = 5/192 (2%)

Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 82
             VV L  D+F + +      L EF+APWCGHCKN+AP Y K A     E ++ +A +D 
Sbjct: 14  SAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLV-EKNITLAQIDC 72

Query: 83  DKYKDLAEKYGVSGFPTLKFFPKGNKDG-EEYGGGRDLEDFVSFINEKCGTSRDGKGQLT 141
            + +DL  ++ + GFP+LK F   + +   +Y G R  E  V F+ ++   +      L 
Sbjct: 73  TENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVAVVADLP 132

Query: 142 STAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEG---STARHGKIYLKVAKNYM 198
           +       +  ++ +      D     +S   +     +      A           + M
Sbjct: 133 AYLANETFVTPVIVQSGKIDADFNATFYSMANKHFNDYDFVSAENADDDFKLSIYLPSAM 192

Query: 199 DKGSDYAKKEID 210
           D+   Y  K+ D
Sbjct: 193 DEPVVYNGKKAD 204

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score =  135 bits (340), Expect = 3e-37
 Identities = 44/146 (30%), Positives = 61/146 (41%), Gaps = 5/146 (3%)

Query: 23  DDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAF-TLEDDVVVANL 80
             V  L   N ++ V    +  LV +YAPWCGHCK LAPTY+++A  +     DV++A L
Sbjct: 358 SSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKL 417

Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKGNKD-GEEYGGGRDLEDFVSFINEKCGTSRDGKGQ 139
           D    ++      + G+PT+  +P G K     Y G R L+    FI E      DGK  
Sbjct: 418 DHT--ENDVRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHFDVDGKAL 475

Query: 140 LTSTAGIVASLDALVKEFVAASGDEK 165
                   A       E         
Sbjct: 476 YEEAQEKAAEEADADAELADEEDAIH 501

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score = 47.9 bits (113), Expect = 1e-06
 Identities = 15/111 (13%), Positives = 34/111 (30%), Gaps = 4/111 (3%)

Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
              +    F + V      L   +       +   P + ++A        +   ++DA K
Sbjct: 223 FGEIDGSVFAQYVESGL-PLGYLFYNDEEELEEYKPLFTELAKKN--RGLMNFVSIDARK 279

Query: 85  YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRD 135
           +   A    +     L       +D  +YG  +  E+    +++K      
Sbjct: 280 FGRHAGNLNMKEQFPLFAIHDMTED-LKYGLPQLSEEAFDELSDKIVLESK 329

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382

 Score =  143 bits (363), Expect = 3e-41
 Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 5/156 (3%)

Query: 21  LADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAF----TLEDDVV 76
           L  ++  L  +N ++ +     ALV FYA WC   + L P +E+ +         E+ VV
Sbjct: 3   LGSEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVV 62

Query: 77  VANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDG 136
            A +D D++ D+A++Y +S +PTLK F  G     EY G R ++    +I ++       
Sbjct: 63  FARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQKSDPIQE 122

Query: 137 KGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKI 172
              L     +  S   ++  +      +   VF ++
Sbjct: 123 IRDLAEITTLDRSKRNII-GYFEQKDSDNYRVFERV 157

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382

 Score = 56.5 bits (136), Expect = 1e-09
 Identities = 14/116 (12%), Positives = 41/116 (35%), Gaps = 10/116 (8%)

Query: 16  FFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDV 75
           +     +D +  + +      + + +  ++ ++        +    +E+VA     +   
Sbjct: 111 YIRQQKSDPIQEIRDLAEITTLDRSKRNIIGYFE---QKDSDNYRVFERVANILHDDCAF 167

Query: 76  VVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEY-GGGRDLEDFVSFINEKC 130
           + A        D+++    SG   +   P  +     Y G   + +   ++I +KC
Sbjct: 168 LSAF------GDVSKPERYSGDNIIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKC 217

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} Length = 298

 Score =  140 bits (354), Expect = 9e-41
 Identities = 44/128 (34%), Positives = 56/128 (43%), Gaps = 17/128 (13%)

Query: 23  DDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 81
             +  LT  +F+K +   +  +LVEFYAPWCGHCK L+ T+ K A        V   N D
Sbjct: 17  PHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCD 76

Query: 82  ADKYKDLAEKYGVSGFPTLKFFPKGNKDG----------------EEYGGGRDLEDFVSF 125
            +K K L  KY V+GFPTL  F     D                 E Y G R L   V F
Sbjct: 77  LNKNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDF 136

Query: 126 INEKCGTS 133
              +  + 
Sbjct: 137 SLSRIRSY 144

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} Length = 298

 Score = 74.4 bits (182), Expect = 6e-16
 Identities = 27/139 (19%), Positives = 45/139 (32%), Gaps = 22/139 (15%)

Query: 25  VVVLTEDNFEKE----VGQDRGALVEFYAPWCGHCKNLA---PTYEKVAAAFTLEDDVVV 77
           VV+ ++ +        +  D     +FY+      K L    PTYEK    F     V+ 
Sbjct: 166 VVLFSKQDKISPVYKSIALDWLGKFDFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKVIP 225

Query: 78  ANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEY-GGGRDLEDFVSFINEKCGTSRDG 136
               +DK               L  F        EY G   +  D   F+ +    + + 
Sbjct: 226 EQRQSDK-------------SKLVVFDADKDKFWEYEGNSINKNDISKFLRDTFSITPN- 271

Query: 137 KGQLTSTAGIVASLDALVK 155
           +G  +  +  +A L    K
Sbjct: 272 EGPFSRRSEYIAYLKTGKK 290

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* Length = 519

 Score =  141 bits (355), Expect = 3e-39
 Identities = 34/155 (21%), Positives = 64/155 (41%), Gaps = 9/155 (5%)

Query: 22  ADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAF-TLEDDVVVAN 79
           +D + +L  D+    V G      VEF+A WCGH    APT++++A         + +A 
Sbjct: 11  SDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAV 70

Query: 80  LDADKY--KDLAEKYGVSGFPTLKFFPKGNKD---GEEYGGGRDLEDFVSFINEKCGTSR 134
           LD  +     +  ++ ++GFPT++FF    K+       G G +++     + +   + R
Sbjct: 71  LDCAEETNSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHR 130

Query: 135 DGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVF 169
           D               D  +  F   +  +  A+ 
Sbjct: 131 DTWPPACPPLEPAKLND--IDGFFTRNKADYLALV 163

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* Length = 519

 Score = 66.5 bits (161), Expect = 7e-13
 Identities = 30/231 (12%), Positives = 63/231 (27%), Gaps = 23/231 (9%)

Query: 22  ADDVVVLTEDNFEKEVGQDRGA----LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVV 77
              +     ++ +    +++      + E    + G    L  +              V 
Sbjct: 137 CPPLEPAKLNDIDGFFTRNKADYLALVFEREDSYLGREVTLDLSQY----------HAVA 186

Query: 78  ANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGK 137
                +   DL  K+GV+ FP+     +                + S++    G +RD  
Sbjct: 187 VRRVLNTESDLVNKFGVTDFPSCYLLLRNGSVSRVPVLVESRSFYTSYLRGLPGLTRDAP 246

Query: 138 GQLTSTAGIVASLDALV------KEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYL 191
               +          +       K ++A        +         VLEG      K ++
Sbjct: 247 PTTATPVTADKIAPTVWKFADRSKIYMADLESALHYILRVEVGKFSVLEGQRLVALKKFV 306

Query: 192 KVAKNYM---DKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTFT 239
            V   Y        ++     D LQ+   K I  +     +  +   +  T
Sbjct: 307 AVLAKYFPGQPLVQNFLHSINDWLQKQQKKRIPYSFFKAALDSRKEDAVLT 357

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Length = 244

 Score =  133 bits (337), Expect = 1e-38
 Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 9/154 (5%)

Query: 23  DDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAF-TLEDDVVVANL 80
           D + +L  D     V G      VEF+A WCGHC   APT+  +A         + +A L
Sbjct: 12  DPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAAL 71

Query: 81  DADKY--KDLAEKYGVSGFPTLKFFPKGNKDGE---EYGGGRDLEDFVSFINEKCGTSRD 135
           D  +     +   + + GFPT++FF     +G        G D++     + +   +  D
Sbjct: 72  DCAEETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALESHHD 131

Query: 136 GKGQLTSTAGIVASLDALVKEFVAASGDEKKAVF 169
                          +  +  F A + +E  A+ 
Sbjct: 132 TWPPACPPLEPAXLEE--IDGFFARNNEEYLALI 163

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Length = 244

 Score = 91.6 bits (227), Expect = 1e-22
 Identities = 13/112 (11%), Positives = 34/112 (30%), Gaps = 8/112 (7%)

Query: 24  DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
           +   L E +       +    + F        + +A          +    V V  +  +
Sbjct: 141 EPAXLEEIDGFFARNNEEYLALIFEXGGSYLAREVAL-------DLSQHKGVAVRRVL-N 192

Query: 84  KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRD 135
              ++  K+GV+ FP+     +                + +++    G +R+
Sbjct: 193 TEANVVRKFGVTDFPSCYLLFRNGSVSRVPVLMESRSFYTAYLQRLSGLTRE 244

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score =  132 bits (333), Expect = 5e-37
 Identities = 41/111 (36%), Positives = 56/111 (50%), Gaps = 4/111 (3%)

Query: 23  DDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 81
             V VL   NFE       +   VEFYAPWCGHCK LAP ++K+   +   +++V+A +D
Sbjct: 249 QPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMD 308

Query: 82  ADKYKDLAEKYGVSGFPTLKFFPKGNKDG-EEYGGGRDLEDFVSFINEKCG 131
           +    +  E   V  FPTLKFFP        +Y G R L+ F  F+     
Sbjct: 309 ST--ANEVEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFLESGGQ 357

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score = 74.3 bits (182), Expect = 1e-15
 Identities = 22/168 (13%), Positives = 46/168 (27%), Gaps = 7/168 (4%)

Query: 2   ERYQIWLALGTLTLFFVSALADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAP 60
             ++  +    L  F        V+  TE    K  G +    ++ F             
Sbjct: 96  NNFEGEVTKENLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLS 155

Query: 61  TYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG--FPTLKFFPKGN--KDGEEYGGG 116
            ++  A +F  +   +  + D    + + E +G+     P ++           +     
Sbjct: 156 NFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEE 215

Query: 117 RDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDE 164
              E    F +         K  L S           VK  V  + ++
Sbjct: 216 LTAERITEFCHRF--LEGKIKPHLMSQELPEDWDKQPVKVLVGKNFED 261

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score =  133 bits (335), Expect = 1e-36
 Identities = 56/152 (36%), Positives = 75/152 (49%), Gaps = 6/152 (3%)

Query: 24  DVVVLTEDNFEKEVGQDRGA---LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           DV+ LT+DNFE  +     A   LVEF+APWCGH K LAP YE   AA  L+  V +A +
Sbjct: 2   DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEA--AATRLKGIVPLAKV 59

Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQL 140
           D     +   KYGVSG+PTLK F  G +    Y G R  +  VS + ++ G +       
Sbjct: 60  DCTANTNTCNKYGVSGYPTLKIFRDGEEA-GAYDGPRTADGIVSHLKKQAGPASVPLRTE 118

Query: 141 TSTAGIVASLDALVKEFVAASGDEKKAVFSKI 172
                 ++  DA +  F   S  E  + F K 
Sbjct: 119 EEFKKFISDKDASIVGFFDDSFSEAHSEFLKA 150

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score =  126 bits (316), Expect = 6e-34
 Identities = 42/114 (36%), Positives = 68/114 (59%), Gaps = 3/114 (2%)

Query: 26  VVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
            V+  +NF++ V   ++  L+EFYAPWCGHCKNL P Y+++    + + ++V+A +DA  
Sbjct: 355 KVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATA 414

Query: 85  YKDLAEKYGVSGFPTLKFFPKGNKDG-EEYGGGRDLEDFVSFINEKCGTSRDGK 137
             D+   Y V GFPT+ F P   K   ++Y GGR+L DF+S++  +       +
Sbjct: 415 -NDVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQREATNPPVIQ 467

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  134 bits (338), Expect = 3e-36
 Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 16  FFVSALADDVVVLTEDNFEKEVGQDR-GALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDD 74
           + +  L    + LT   F ++V Q +   +V+FYAPW G  +N AP +E +A     +  
Sbjct: 650 WGLGFLPQASIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMI--KGK 707

Query: 75  VVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK---DGEEYGGGRDLEDFVSFINEKCG 131
           V    +D   Y    +K G+  +P++K +          EE    RD +   + I  K  
Sbjct: 708 VRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLE 767

Query: 132 TSRDGKGQLTS 142
           T +    +   
Sbjct: 768 TLQSQVKRNKD 778

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  129 bits (324), Expect = 2e-34
 Identities = 30/128 (23%), Positives = 47/128 (36%), Gaps = 6/128 (4%)

Query: 2   ERYQIWLALGTLTLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPT 61
           E +     L  +  F   ++   V  L   NF          LV+F+APW    + L P 
Sbjct: 419 EIHHGKKILYDILAFAKESVNSHVTTLGPQNFPAS--DKEPWLVDFFAPWSPPSRALLPE 476

Query: 62  YEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLED 121
             K +        + V  LD   ++ L   Y +  +PT   F + +    EY G    E 
Sbjct: 477 LRKASTLL--YGQLKVGTLDCTIHEGLCNMYNIQAYPTTVVFNQSSI--HEYEGHHSAEQ 532

Query: 122 FVSFINEK 129
            + FI + 
Sbjct: 533 ILEFIEDL 540

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  119 bits (298), Expect = 7e-31
 Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 3/111 (2%)

Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 82
            +++ L    F+  V       V FY+P   H  +LAPT+ +   A  ++  + +  ++ 
Sbjct: 116 PEIITLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWRE--FAKEVDGLLRIGAVNC 173

Query: 83  DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS 133
              + L    GV+ +P+L  F  G     +Y G R  E  V+F  +   ++
Sbjct: 174 GDDRMLCRMKGVNSYPSLFIFRSG-MAAVKYNGDRSKESLVAFAMQHVRST 223

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  109 bits (272), Expect = 2e-27
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 9/157 (5%)

Query: 10  LGTLTLFFVSALADDVVVLTEDNFEKEVGQ---DRGALVEFYAPWCGHCKNLAPTYEKVA 66
              +  F        VV LT   F + V Q   D   +V+FY+PW    + L P ++++A
Sbjct: 530 AEQILEFIEDLRNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMA 589

Query: 67  AAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEY----GGGRDLEDF 122
                   + V ++D  +Y     +  V  +P ++F+P+ +    +Y    G  RD    
Sbjct: 590 RTL--TGLINVGSVDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSL 647

Query: 123 VSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVA 159
            S+       +       T    ++      V +F A
Sbjct: 648 RSWGLGFLPQASIDLTPQTFNEKVLQGKTHWVVDFYA 684

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 98.7 bits (245), Expect = 9e-24
 Identities = 19/107 (17%), Positives = 36/107 (33%)

Query: 16  FFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDV 75
           F +  +   V  L+  NF   +     A V +   +C   ++   +  ++  +  L+  V
Sbjct: 215 FAMQHVRSTVTELSTGNFVNAIETAFAAGVGWLITFCSKGEDCLTSQTRLRLSGMLDGLV 274

Query: 76  VVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDF 122
            V  +D D    L +    +   T  F P    +  E      L   
Sbjct: 275 NVGWVDCDAQDSLCKSLDTTASTTAYFPPGATLNDREKSSVLFLNSL 321

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 64.8 bits (157), Expect = 3e-12
 Identities = 20/117 (17%), Positives = 41/117 (35%), Gaps = 6/117 (5%)

Query: 17  FVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVV 76
            +     D  +L+ +  E  +   R      +  +  +     P  +K+       + + 
Sbjct: 329 EIIHNLPDFELLSANQLEDRLAHHR---WLVFFHFGKNENANDPELKKLKTLLK-NEHIQ 384

Query: 77  VANLDADKYKDLAEKYGVSGFPTLKFF-PKGNKDGEEYGGGRDLEDFVSFINEKCGT 132
           V   D      +     V   P+L  F  +G K+ E + G + L D ++F  E   +
Sbjct: 385 VVRFDCSSAPGICSDLYVF-QPSLAVFKGQGTKEYEIHHGKKILYDILAFAKESVNS 440

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* Length = 470

 Score =  132 bits (331), Expect = 4e-36
 Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 8/116 (6%)

Query: 22  ADDVVVLTEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDD----- 74
              VV L+ D+F +          +V FY   CG C+  A T+ K A    +E       
Sbjct: 22  DSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQ 81

Query: 75  -VVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK 129
               A ++     DL  KY ++  P L FF   +        G    + V+F N  
Sbjct: 82  IATAAAVNCASEVDLCRKYDINFVPRLFFFYPRDSCRSNEECGTSSLEHVAFENSH 137

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367

 Score =  123 bits (311), Expect = 9e-34
 Identities = 24/189 (12%), Positives = 58/189 (30%), Gaps = 29/189 (15%)

Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKN------LAPTYEKVAAAFTLEDDVV 76
           D V+ +   N++    +     + ++ P      +           E  AA    +  V 
Sbjct: 13  DRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILEL-AAQVLEDKGVG 71

Query: 77  VANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDG 136
              +D++K   +A+K G++   ++  F +      EY G    +  V F+ +        
Sbjct: 72  FGLVDSEKDAAVAKKLGLTEEDSIYVFKEDEV--IEYDGEFSADTLVEFLLDVLEDP--- 126

Query: 137 KGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKN 196
                            V+        +         + +   +   + H K + + A+ 
Sbjct: 127 -----------------VELIEGERELQAFENIEDEIKLIGYFKNKDSEHYKAFKEAAEE 169

Query: 197 YMDKGSDYA 205
           +      +A
Sbjct: 170 FHPYIPFFA 178

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367

 Score = 43.5 bits (102), Expect = 2e-05
 Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 12/121 (9%)

Query: 13  LTLFFVSALADDVVVLT--EDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFT 70
           L  F +  L D V ++    +    E  +D   L+ ++             +++ A  F 
Sbjct: 115 LVEFLLDVLEDPVELIEGERELQAFENIEDEIKLIGYFK---NKDSEHYKAFKEAAEEF- 170

Query: 71  LEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEY-GGGRDLEDFVSFINEK 129
               +      A     +A+K  +     + F+    ++           E+ V+F+ E 
Sbjct: 171 -HPYIPFF---ATFDSKVAKKLTLK-LNEIDFYEAFMEEPVTIPDKPNSEEEIVNFVEEH 225

Query: 130 C 130
            
Sbjct: 226 R 226

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A Length = 350

 Score =  122 bits (307), Expect = 2e-33
 Identities = 30/157 (19%), Positives = 51/157 (32%), Gaps = 10/157 (6%)

Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYE------KVAAAFTLEDDVV 76
           D VV LTE NF++ + +    L  +Y       K     ++      ++ A      D+ 
Sbjct: 11  DRVVSLTEKNFKQVLKKYD-VLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEHKDIG 69

Query: 77  VANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGT-SRD 135
              +DA K   LA+K G     +L           E+ G    +  V F+ +        
Sbjct: 70  FVMVDAKKEAKLAKKLGFDEEGSLYVLKGDRT--IEFDGEFAADVLVEFLLDLIEDPVEI 127

Query: 136 GKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKI 172
              +L   A         +  F  +   E    F + 
Sbjct: 128 INSKLEVQAFERIEDQIKLIGFFKSEESEYYKAFEEA 164

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A Length = 350

 Score = 55.1 bits (132), Expect = 4e-09
 Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 10/117 (8%)

Query: 16  FFVSALADDVVVLT--EDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLED 73
           F +  + D V ++    +    E  +D+  L+ F+             +E+ A  F  + 
Sbjct: 116 FLLDLIEDPVEIINSKLEVQAFERIEDQIKLIGFFK---SEESEYYKAFEEAAEHF--QP 170

Query: 74  DVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC 130
            +      A   K +A+K  +       + P  ++           E+ V F+ E  
Sbjct: 171 YIKFF---ATFDKGVAKKLSLKMNEVDFYEPFMDEPIAIPDKPYTEEELVEFVKEHQ 224

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} Length = 140

 Score = 94.4 bits (235), Expect = 1e-24
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 82
             VV   E  F +EV      LV+F+APWCG C+ ++P  E++A        + V  ++ 
Sbjct: 33  PWVVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDH--AGRLKVVKVNV 90

Query: 83  DKYKDLAEKYGVSGFPTLKFFPKGNKDGEE 112
           D++  LA +YGV   PTL  F    + G  
Sbjct: 91  DEHPGLAARYGVRSVPTLVLF----RRGAP 116

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A Length = 110

 Score = 92.8 bits (231), Expect = 2e-24
 Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 7/87 (8%)

Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
           +  +T +           A+V F+   C HCKN+    +K  A       V ++++D++ 
Sbjct: 4   IRDITTEAGMAHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARA---PQVAISSVDSEA 60

Query: 85  YKDLAEKYGVSGFPTLKFFPKGNKDGE 111
             +L ++ G    PTL F     +DG+
Sbjct: 61  RPELMKELGFERVPTLVFI----RDGK 83

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} Length = 155

 Score = 92.2 bits (229), Expect = 1e-23
 Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 10/119 (8%)

Query: 19  SALADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVV 77
           + L    V   +        + D   LV+F+APWCG C+ +AP ++  AA       V +
Sbjct: 42  AGLITGKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATL--AGQVRL 99

Query: 78  ANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG---GGRDLEDFVSFINEKCGTS 133
           A +D   +  +A ++ + G P    F      G E     G R   + V F+  K G  
Sbjct: 100 AKIDTQAHPAVAGRHRIQGIPAFILF----HKGRELARAAGARPASELVGFVRGKLGAR 154

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126

 Score = 91.0 bits (226), Expect = 1e-23
 Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 6/108 (5%)

Query: 24  DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
           +   +      +E  +    ++ F    C +C  +      V+     + ++  A L+ +
Sbjct: 10  NFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEE 69

Query: 84  KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG---GGRDLEDFVSFINE 128
           K  DLA KY  +  PT  F    +K+G ++    G     +  + +N 
Sbjct: 70  KNIDLAYKYDANIVPTTVFL---DKEGNKFYVHQGLMRKNNIETILNS 114

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} Length = 148

 Score = 90.6 bits (225), Expect = 3e-23
 Identities = 23/111 (20%), Positives = 52/111 (46%), Gaps = 9/111 (8%)

Query: 21  LADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
              +V+  T +  +K +  D   +++F+APWCG C++ AP + + AA       V    +
Sbjct: 36  FDGEVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAER--AGKVRFVKV 93

Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG---GGRDLEDFVSFINE 128
           + +    L+ ++ +   PT+  +    ++G+      G      F ++++E
Sbjct: 94  NTEAEPALSTRFRIRSIPTIMLY----RNGKMIDMLNGAVPKAPFDNWLDE 140

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Length = 229

 Score = 92.0 bits (228), Expect = 7e-23
 Identities = 24/134 (17%), Positives = 48/134 (35%), Gaps = 4/134 (2%)

Query: 31  DNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAF---TLEDDVVVANLDADKYKD 87
           +  +KE  +     +   A  C  C+      ++          +D + +       +K+
Sbjct: 13  ELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKE 72

Query: 88  LAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIV 147
             EKYGV   PT+      +  G  Y G     +F + IN     S+        T  ++
Sbjct: 73  ETEKYGVDRVPTIVIEGDKDY-GIRYIGLPAGLEFTTLINGIFHVSQRKPQLSEKTLELL 131

Query: 148 ASLDALVKEFVAAS 161
             +D  ++ +V  +
Sbjct: 132 QVVDIPIEIWVFVT 145

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Length = 229

 Score = 89.7 bits (222), Expect = 4e-22
 Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 8/126 (6%)

Query: 15  LFFVSALADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLED 73
           +  +  ++     L+E   E     D    +  F    CG+C + A      A      D
Sbjct: 110 INGIFHVSQRKPQLSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFAL---AND 166

Query: 74  DVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS 133
            +    +DA + +DLAE++ V G P +      NK   E+ G +    F+ +I       
Sbjct: 167 YITSKVIDASENQDLAEQFQVVGVPKIVI----NKGVAEFVGAQPENAFLGYIMAVYEKL 222

Query: 134 RDGKGQ 139
           +  K Q
Sbjct: 223 KREKEQ 228

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} Length = 135

 Score = 89.5 bits (222), Expect = 8e-23
 Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 14/116 (12%)

Query: 24  DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAA-----AFTLEDDVVVA 78
            ++ +T + F + +  D  A++  Y+  C HC    P   + +              ++ 
Sbjct: 17  RLIYITPEEFRQLLQGD--AILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIG 74

Query: 79  NLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG---GGRDLEDFVSFINEKCG 131
             +    +    K GV G PTL F+    K+G       G       V    E  G
Sbjct: 75  ERELSAARLEMNKAGVEGTPTLVFY----KEGRIVDKLVGATPWSLKVEKAREIYG 126

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 137

 Score = 88.0 bits (218), Expect = 3e-22
 Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 13/102 (12%)

Query: 19  SALADDVVVLTEDNFEKEVGQDRGA--LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVV 76
           S  +  +    +   ++E+ +D+    +VEF+A W   C++ AP Y  ++  +     + 
Sbjct: 3   SGSSGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNC-TGLN 61

Query: 77  VANLDADKYKDLAEKYGVS------GFPTLKFFPKGNKDGEE 112
              +D  +Y D++ +Y VS        PTL  F    + G+E
Sbjct: 62  FGKVDVGRYTDVSTRYKVSTSPLTKQLPTLILF----QGGKE 99

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} Length = 140

 Score = 87.5 bits (217), Expect = 4e-22
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 7/91 (7%)

Query: 22  ADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
              ++   +  + ++V    +  +V FY+P C +CK + P +E+ A  +      V   +
Sbjct: 5   GSSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEY--GSSAVFGRI 62

Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKGNKDGE 111
           +       AEKYGV G PT KFF      G 
Sbjct: 63  NIATNPWTAEKYGVQGTPTFKFF----CHGR 89

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Length = 142

 Score = 87.6 bits (217), Expect = 4e-22
 Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 9/103 (8%)

Query: 29  TEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDL 88
           T D++ K VG D   L+           +      ++   F  + D  VA  D ++ + +
Sbjct: 26  TVDDWIKRVG-DGVILLSSDPRRTPEVSDNPVMIAELLREFP-QFDWQVAVADLEQSEAI 83

Query: 89  AEKYGVSGFPTLKFFPKGNKDGEEYG---GGRDLEDFVSFINE 128
            +++ V  FP    F     DG+  G   G     + ++ +  
Sbjct: 84  GDRFNVRRFPATLVF----TDGKLRGALSGIHPWAELLTLMRS 122

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} Length = 118

 Score = 86.7 bits (215), Expect = 4e-22
 Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 6/106 (5%)

Query: 26  VVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
              T +     + +     LV+F+A WCG C+ L      +A A     DV    +D DK
Sbjct: 8   FNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN---KDVTFIKVDVDK 64

Query: 85  YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGG--GRDLEDFVSFINE 128
             + A+ YGVS  P L F  K   + +      G D+    + I +
Sbjct: 65  NGNAADAYGVSSIPALFFVKKEGNEIKTLDQFVGADVSRIKADIEK 110

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105

 Score = 86.2 bits (214), Expect = 5e-22
 Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 10/103 (9%)

Query: 29  TEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDL 88
           T +     + + +  L+      CG C  +      V   +   + V    +     +++
Sbjct: 7   TIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENY---NYVEKIEILLQDMQEI 63

Query: 89  AEKYGVSGFPTLKFFPKGNKDGEEY---GGGRDLEDFVSFINE 128
           A +Y V   PT+  F     +G+E         LE+    I  
Sbjct: 64  AGRYAVFTGPTVLLF----YNGKEILRESRFISLENLERTIQL 102

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B Length = 109

 Score = 85.4 bits (212), Expect = 1e-21
 Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 7/88 (7%)

Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
               T   F+  + QD+  +V+FYA WCG CK +AP  EK +  +          LD D+
Sbjct: 9   TQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQY---PQADFYKLDVDE 65

Query: 85  YKDLAEKYGVSGFPTLKFFPKGNKDGEE 112
             D+A+K  VS  PTL  F    K+G+E
Sbjct: 66  LGDVAQKNEVSAMPTLLLF----KNGKE 89

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A Length = 104

 Score = 84.7 bits (210), Expect = 2e-21
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 7/87 (8%)

Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
           V+ L   NF+  +     A+V+F+A WC  C  LAP  E++A  +     V    L++D+
Sbjct: 1   VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDY---PQVGFGKLNSDE 57

Query: 85  YKDLAEKYGVSGFPTLKFFPKGNKDGE 111
             D+A +YGV   PT+ FF    KDGE
Sbjct: 58  NPDIAARYGVMSLPTVIFF----KDGE 80

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} Length = 109

 Score = 83.9 bits (208), Expect = 4e-21
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 6/90 (6%)

Query: 22  ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 81
            D  +VLTE+NF++ +  ++  LV+ +A WC  C    P Y+KVA  +  +   V   L+
Sbjct: 3   EDVTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKY--KGKAVFGRLN 60

Query: 82  ADKYKDLAEKYGVSGFPTLKFFPKGNKDGE 111
            D+ + +A+KY V   PT   F     +G+
Sbjct: 61  VDENQKIADKYSVLNIPTTLIF----VNGQ 86

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} Length = 128

 Score = 84.0 bits (208), Expect = 6e-21
 Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 10/108 (9%)

Query: 25  VVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
            +     N    V   +   ++ F+A WC  C   +   +K+   +     + +  +D D
Sbjct: 26  RLQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYY--GKRIYLLKVDLD 83

Query: 84  KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG---GGRDLEDFVSFINE 128
           K + LA K+ V   PT+       K+              D ++ I +
Sbjct: 84  KNESLARKFSVKSLPTIILL----KNKTMLARKDHFVSSNDLIALIKK 127

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} Length = 128

 Score = 84.0 bits (208), Expect = 6e-21
 Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 7/91 (7%)

Query: 22  ADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           +D ++ LT+D+F+ +V + D   LV+F+A WCG  K +AP  +++A  +  +  + VA L
Sbjct: 21  SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEY--QGKLTVAKL 78

Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKGNKDGE 111
           + D+    A KYG+ G PTL  F    K+GE
Sbjct: 79  NIDQNPGTAPKYGIRGIPTLLLF----KNGE 105

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 Length = 112

 Score = 83.5 bits (207), Expect = 7e-21
 Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 4/100 (4%)

Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
            +V ++  F+  + Q+   +V+F+A WCG CK +AP YE+ +  +     +V   +D D+
Sbjct: 11  KIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTY---TKMVFIKVDVDE 67

Query: 85  YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD-LEDFV 123
             ++ EK  ++  PT K +  G+      G     L+  +
Sbjct: 68  VSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLI 107

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} Length = 121

 Score = 83.6 bits (207), Expect = 7e-21
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 25  VVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
           V V++  +  K+V G D+  +++F+A WCG CK + P +EK++      D V    +D D
Sbjct: 17  VQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPA-GDKVGFYKVDVD 75

Query: 84  KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG 114
           +   +A++ G+   PT  FF  G K     G
Sbjct: 76  EQSQIAQEVGIRAMPTFVFFKNGQKIDTVVG 106

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} Length = 112

 Score = 83.1 bits (206), Expect = 9e-21
 Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 7/94 (7%)

Query: 19  SALADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVV 77
           S +A  +  +T+D+FE++V + D+  LV+F+A WCG C+ +AP+ E +AA +   D + +
Sbjct: 1   SHMAGTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEY--GDKIEI 58

Query: 78  ANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGE 111
             L+ D+    A KYGV   PTL  +    + GE
Sbjct: 59  VKLNIDENPGTAAKYGVMSIPTLNVY----QGGE 88

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C Length = 105

 Score = 82.7 bits (205), Expect = 1e-20
 Identities = 26/89 (29%), Positives = 51/89 (57%), Gaps = 7/89 (7%)

Query: 24  DVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 82
           +V  + + ++++ V + +   +V+F+APWCG CK +AP  +++A  +     + V  L+ 
Sbjct: 1   EVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEY--SGKIAVYKLNT 58

Query: 83  DKYKDLAEKYGVSGFPTLKFFPKGNKDGE 111
           D+   +A +Y +   PT+ FF    K+GE
Sbjct: 59  DEAPGIATQYNIRSIPTVLFF----KNGE 83

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... Length = 108

 Score = 82.7 bits (205), Expect = 1e-20
 Identities = 35/91 (38%), Positives = 56/91 (61%), Gaps = 7/91 (7%)

Query: 22  ADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           +D ++ LT+D+F+ +V + D   LV+F+A WCG CK +AP  +++A  +  +  + VA L
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKL 58

Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKGNKDGE 111
           + D+    A KYG+ G PTL  F    K+GE
Sbjct: 59  NIDQNPGTAPKYGIRGIPTLLLF----KNGE 85

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} Length = 136

 Score = 83.6 bits (207), Expect = 1e-20
 Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 14/99 (14%)

Query: 22  ADDVVVLTEDNFEKEVGQ------------DRGALVEFYAPWCGHCKNLAPTYEKVAAAF 69
              V+ LT+  F  +V              D+ A+V+FYA WCG CK +AP  +++A  +
Sbjct: 8   NGKVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEY 67

Query: 70  TLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK 108
             +  +V+  +D +K ++LA  +G+   P++ F P   K
Sbjct: 68  --DGQIVIYKVDTEKEQELAGAFGIRSIPSILFIPMEGK 104

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 Length = 115

 Score = 82.7 bits (205), Expect = 1e-20
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)

Query: 22  ADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           +  V+ +T+  FE EV + ++  LV F+A WCG C+ ++P     A  +   D + V  L
Sbjct: 6   SKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTY--SDRLKVVKL 63

Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKGNKDGE 111
           + D      +KY V G P L+      K  +
Sbjct: 64  EIDPNPTTVKKYKVEGVPALRLV----KGEQ 90

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} Length = 111

 Score = 82.7 bits (205), Expect = 1e-20
 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 7/88 (7%)

Query: 25  VVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
           +  L  + FE+ +    +  LV F    C  C+ + P  E++   +  E+      +D +
Sbjct: 6   LEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNY--EESFGFYYVDVE 63

Query: 84  KYKDLAEKYGVSGFPTLKFFPKGNKDGE 111
           + K L +++ + G P + +F    KDGE
Sbjct: 64  EEKTLFQRFSLKGVPQILYF----KDGE 87

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A Length = 111

 Score = 82.4 bits (204), Expect = 2e-20
 Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 6/98 (6%)

Query: 20  ALADDVVVLTEDNFEKEVGQ--DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVV 77
           A+   V  + +D F   V    D+  +++ +  WCG  K +AP YEK+A  +    DV+ 
Sbjct: 2   AIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEY---LDVIF 58

Query: 78  ANLDADKY-KDLAEKYGVSGFPTLKFFPKGNKDGEEYG 114
             LD ++  K LA++ G+   PT K   + +  GE  G
Sbjct: 59  LKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTG 96

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A Length = 106

 Score = 82.3 bits (204), Expect = 2e-20
 Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 4/92 (4%)

Query: 25  VVVLTEDNFEKEVGQ--DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 82
             V  + + + ++ +   +  +++F+A WCG CK ++P   +++  F   D+VVV  +D 
Sbjct: 3   YQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQF--ADNVVVLKVDV 60

Query: 83  DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG 114
           D+ +D+A +Y +S  PT  F   G K  E  G
Sbjct: 61  DECEDIAMEYNISSMPTFVFLKNGVKVEEFAG 92

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A Length = 109

 Score = 82.0 bits (203), Expect = 2e-20
 Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 6/88 (6%)

Query: 24  DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
             + +T+ NF++ +GQ    LV+F+A WC  C+ +AP  E++A  +  E  ++VA LD D
Sbjct: 2   KPIEVTDQNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEY--EGKLLVAKLDVD 59

Query: 84  KYKDLAEKYGVSGFPTLKFFPKGNKDGE 111
           +    A +Y V   PT+  F    KDG+
Sbjct: 60  ENPKTAMRYRVMSIPTVILF----KDGQ 83

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 Length = 125

 Score = 82.4 bits (204), Expect = 2e-20
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 7/88 (7%)

Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
           V V + + F   + +D   +  F A WCG CK +    EK+A  F     V  A +DAD 
Sbjct: 22  VDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEF---PTVKFAKVDADN 78

Query: 85  YKDLAEKYGVSGFPTLKFFPKGNKDGEE 112
             ++  K  V   PT        + G+ 
Sbjct: 79  NSEIVSKCRVLQLPTFIIA----RSGKM 102

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 Length = 124

 Score = 82.5 bits (204), Expect = 3e-20
 Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 6/106 (5%)

Query: 12  TLTLFFVSALADDVVVLTEDNFEKEVGQ--DRGALVEFYAPWCGHCKNLAPTYEKVAAAF 69
            L    + A+   V  + +D F   V    D+  +++ +  WCG CK +AP YEK+A  +
Sbjct: 7   ALGTQEMEAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEY 66

Query: 70  TLEDDVVVANLDADKY-KDLAEKYGVSGFPTLKFFPKGNKDGEEYG 114
               DV+   LD ++  K LA++ G+   PT K   + +  GE  G
Sbjct: 67  ---LDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTG 109

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A Length = 141

 Score = 83.0 bits (205), Expect = 3e-20
 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 14/98 (14%)

Query: 23  DDVVVLTEDNFEKEVGQ------------DRGALVEFYAPWCGHCKNLAPTYEKVAAAFT 70
              + LT   F K++              D+ A+V+FYA WCG CK +AP  E+++  + 
Sbjct: 22  SGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEY- 80

Query: 71  LEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK 108
               + +  ++ DK  +LA  +G+   PT+ F P   +
Sbjct: 81  -AGKIYIYKVNVDKEPELARDFGIQSIPTIWFVPMKGE 117

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A Length = 119

 Score = 82.0 bits (203), Expect = 3e-20
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 7/88 (7%)

Query: 25  VVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
             +    +F+  V   +   +V+F+A WCG CK L P  EK+ A       VV+A +D D
Sbjct: 15  FNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQ--HGKVVMAKVDID 72

Query: 84  KYKDLAEKYGVSGFPTLKFFPKGNKDGE 111
            + DLA +Y VS  PT+       K+G+
Sbjct: 73  DHTDLAIEYEVSAVPTVLAM----KNGD 96

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A Length = 112

 Score = 81.9 bits (203), Expect = 3e-20
 Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 7/87 (8%)

Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
           +V  T+ +F  E   +   L +F+APWCG  K +AP  E++       D + +  +D D+
Sbjct: 3   IVKATDQSFSAET-SEGVVLADFWAPWCGPSKMIAPVLEELDQEM--GDKLKIVKIDVDE 59

Query: 85  YKDLAEKYGVSGFPTLKFFPKGNKDGE 111
            ++ A KYGV   PTL       KDGE
Sbjct: 60  NQETAGKYGVMSIPTLLVL----KDGE 82

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A Length = 114

 Score = 82.0 bits (203), Expect = 3e-20
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 8/89 (8%)

Query: 25  VVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
           +  LT     + +  Q+   +++FYA WCG CK + P   K+  A+    DV     D D
Sbjct: 14  ITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYP---DVRFVKCDVD 70

Query: 84  KYKDLAEKYGVSGFPTLKFFPKGNKDGEE 112
           +  D+A++  V+  PT        KDG+ 
Sbjct: 71  ESPDIAKECEVTAMPTFVLG----KDGQL 95

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Length = 117

 Score = 82.0 bits (203), Expect = 3e-20
 Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 7/102 (6%)

Query: 25  VVVLTEDNFEKEVGQ--DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 82
           + +  + + E  + Q  ++  +V+F+A WCG CK +AP +++++  +    D +   +D 
Sbjct: 16  IELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY----DAIFVKVDV 71

Query: 83  DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD-LEDFV 123
           DK ++ A KY +S  PT      G K G+  G     +ED +
Sbjct: 72  DKLEETARKYNISAMPTFIAIKNGEKVGDVVGASIAKVEDMI 113

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} Length = 107

 Score = 81.2 bits (201), Expect = 4e-20
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 7/91 (7%)

Query: 22  ADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           ++  + +++ +F+++V +     LV+F+A WCG CK + P   ++   F     V VA +
Sbjct: 1   SEHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEF--AGKVTVAKV 58

Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKGNKDGE 111
           + D   +    Y V   PTL       +DG+
Sbjct: 59  NIDDNPETPNAYQVRSIPTLMLV----RDGK 85

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} Length = 106

 Score = 80.8 bits (200), Expect = 5e-20
 Identities = 34/88 (38%), Positives = 56/88 (63%), Gaps = 7/88 (7%)

Query: 25  VVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
           V+ +T++NFE+EV + D+  LV+F+APWCG C+ +AP  E++A  +  E  V V  ++ D
Sbjct: 3   VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEY--EGKVKVVKVNVD 60

Query: 84  KYKDLAEKYGVSGFPTLKFFPKGNKDGE 111
           +  + A +YG+   PTL  F    K+G+
Sbjct: 61  ENPNTAAQYGIRSIPTLLLF----KNGQ 84

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} Length = 133

 Score = 81.7 bits (202), Expect = 5e-20
 Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 9/114 (7%)

Query: 25  VVVLTEDNFEKEV---GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 81
            + L       +V    Q+   +++F A WC  C  +   ++           V + ++D
Sbjct: 22  YIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLN----YYYVTLVDID 77

Query: 82  ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGG--GRDLEDFVSFINEKCGTS 133
            D +  L +++ +   PT +F+   N +        G +  D      + C   
Sbjct: 78  VDIHPKLNDQHNIKALPTFEFYFNLNNEWVLVHTVEGANQNDIEKAFQKYCLEK 131

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 Length = 107

 Score = 80.8 bits (200), Expect = 5e-20
 Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 7/88 (7%)

Query: 25  VVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
              + +D F+  V +     LV+F+APWCG C+ +AP  +++A  +  +D +    L+ D
Sbjct: 3   AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEY--KDKLKCVKLNTD 60

Query: 84  KYKDLAEKYGVSGFPTLKFFPKGNKDGE 111
           +  ++A +YG+   PT+  F    K G+
Sbjct: 61  ESPNVASEYGIRSIPTIMVF----KGGK 84

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134

 Score = 81.8 bits (202), Expect = 6e-20
 Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 14/117 (11%)

Query: 27  VLTEDNFEKEVGQDRG--ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
           + T D   + + + +G   +++ YA WC  CK                 D V+   +   
Sbjct: 16  IKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTA 75

Query: 85  YKD----LAEKYGVSGFPTLKFFPKGNKDGEEYG-----GGRDLEDFVSFINEKCGT 132
                  L +   V G PT+ FF   +  G+E+      G  D E F + + ++   
Sbjct: 76  NDAQDVALLKHLNVLGLPTILFF---DGQGQEHPQARVTGFMDAETFSAHLRDRQPH 129

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} Length = 104

 Score = 80.4 bits (199), Expect = 7e-20
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 9/89 (10%)

Query: 26  VVLTEDNFEKEVGQ--DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
           V+ T  + EK + +   R  +V+F+A WCG C+N+AP  E +A       +V  A +D D
Sbjct: 3   VLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEI---PEVEFAKVDVD 59

Query: 84  KYKDLAEKYGVSGFPTLKFFPKGNKDGEE 112
           + ++ A KY V+  PT  F     KDG+E
Sbjct: 60  QNEEAAAKYSVTAMPTFVFI----KDGKE 84

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A Length = 105

 Score = 80.0 bits (198), Expect = 1e-19
 Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 6/87 (6%)

Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
            + LT+ NF++ +  D   LV+F+A WCG C+ +AP  E+ A A    D V VA L+ D+
Sbjct: 2   TMTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAH--ADKVTVAKLNVDE 59

Query: 85  YKDLAEKYGVSGFPTLKFFPKGNKDGE 111
             +   ++G+   PTL  F    K G 
Sbjct: 60  NPETTSQFGIMSIPTLILF----KGGR 82

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Length = 107

 Score = 80.0 bits (198), Expect = 1e-19
 Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 25  VVVLTEDNFEKEVGQ--DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 82
             V ++ +F+ E+     R A+V+F    CG C  +AP +  ++  +      V   +D 
Sbjct: 4   KPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP---QAVFLEVDV 60

Query: 83  DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD-LEDFV 123
            + +  A    +S  PT +FF    +  +  G     LE+ +
Sbjct: 61  HQCQGTAATNNISATPTFQFFRNKVRIDQYQGADAVGLEEKI 102

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A Length = 121

 Score = 80.5 bits (199), Expect = 1e-19
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 7/91 (7%)

Query: 22  ADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
               + +T+ +F  +V   ++  LV+F+A WCG CK +AP  E++A       D+ VA L
Sbjct: 11  KSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATER--ATDLTVAKL 68

Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKGNKDGE 111
           D D   + A  + V   PTL  F    KDG+
Sbjct: 69  DVDTNPETARNFQVVSIPTLILF----KDGQ 95

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative splicing, FBP interacting repressor, RRM, electron transport; 2.20A {Escherichia coli O157} Length = 222

 Score = 82.6 bits (204), Expect = 2e-19
 Identities = 35/91 (38%), Positives = 56/91 (61%), Gaps = 7/91 (7%)

Query: 22  ADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           +D ++ LT+D+F+ +V + D   LV+F+A WCG CK +AP  +++A  +  +  + VA L
Sbjct: 11  SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKL 68

Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKGNKDGE 111
           + D+    A KYG+ G PTL  F    K+GE
Sbjct: 69  NIDQNPGTAPKYGIRGIPTLLLF----KNGE 95

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A 2o85_A 2o89_A 2o87_A Length = 106

 Score = 79.3 bits (196), Expect = 3e-19
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 7/87 (8%)

Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
           +V +T+ +F+ +V      LV+F+A  CG CK +AP  E++AA +  E    +  LD D+
Sbjct: 5   IVKVTDADFDSKVESG-VQLVDFWATACGPCKMIAPVLEELAADY--EGKADILKLDVDE 61

Query: 85  YKDLAEKYGVSGFPTLKFFPKGNKDGE 111
               A KY V   PTL  F    KDG+
Sbjct: 62  NPSTAAKYEVMSIPTLIVF----KDGQ 84

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A Length = 153

 Score = 80.3 bits (198), Expect = 3e-19
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 25  VVVLTEDNFEKEVGQDRGALV--EFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 82
             V +   FE+ +     +L+   F+APW   C  +     ++A        V    L+A
Sbjct: 15  EEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKEL---PQVSFVKLEA 71

Query: 83  DKYKDLAEKYGVSGFPTLKFFPKGNKDGEE 112
           +   +++EKY +S  PT  FF    K+ ++
Sbjct: 72  EGVPEVSEKYEISSVPTFLFF----KNSQK 97

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 Length = 113

 Score = 78.9 bits (195), Expect = 3e-19
 Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 7/84 (8%)

Query: 29  TEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDL 88
            +++FEK  G  +  +V+F A WC  CK +AP + ++A  F    +V    +D D+ K +
Sbjct: 15  WKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKF---PNVTFLKVDVDELKAV 71

Query: 89  AEKYGVSGFPTLKFFPKGNKDGEE 112
           AE++ V   PT  F     KDG+ 
Sbjct: 72  AEEWNVEAMPTFIFL----KDGKL 91

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A Length = 112

 Score = 78.9 bits (195), Expect = 4e-19
 Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 6/88 (6%)

Query: 25  VVVLTEDNFEKEVGQDRGA----LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           +V+ ++  ++ ++ + +      +V+F A WCG CK +AP +E ++  +     V+   +
Sbjct: 5   IVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDY--AGKVIFLKV 62

Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKGNK 108
           D D    +AE  G++  PT   +  G K
Sbjct: 63  DVDAVAAVAEAAGITAMPTFHVYKDGVK 90

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Length = 105

 Score = 78.5 bits (194), Expect = 4e-19
 Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 5/86 (5%)

Query: 25  VVVLTEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 82
             + ++  F++ +    D+  +V+F A WCG CK + P +  ++  ++   +V+   +D 
Sbjct: 3   KQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDV 59

Query: 83  DKYKDLAEKYGVSGFPTLKFFPKGNK 108
           D  +D+A +  V   PT +FF KG K
Sbjct: 60  DDCQDVASESEVKSMPTFQFFKKGQK 85

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116

 Score = 78.5 bits (194), Expect = 6e-19
 Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 5/89 (5%)

Query: 25  VVVLTEDNFEKEVGQ--DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 82
             + ++  F++ +    D+  +V+F A WCG  K + P +  ++  ++   +V+   +D 
Sbjct: 14  KQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS---NVIFLEVDV 70

Query: 83  DKYKDLAEKYGVSGFPTLKFFPKGNKDGE 111
           D  +D+A +  V   PT +FF KG K GE
Sbjct: 71  DDCQDVASECEVKSMPTFQFFKKGQKVGE 99

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A Length = 118

 Score = 77.4 bits (191), Expect = 2e-18
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 11/92 (11%)

Query: 25  VVVLTEDNFEKEVGQDRGA----LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           +   T+  F+  +   +      +++F A WCG C+ +AP + + A  F      +   +
Sbjct: 9   IACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKF---PGAIFLKV 65

Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEE 112
           D D+ KD+AE Y V   PT  F     KDGE+
Sbjct: 66  DVDELKDVAEAYNVEAMPTFLFI----KDGEK 93

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 Length = 124

 Score = 77.4 bits (191), Expect = 2e-18
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 7/84 (8%)

Query: 29  TEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDL 88
             +  +K        +V+F A WCG C+ +AP +  +A       +V+   +D D+ K +
Sbjct: 27  WNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKL---PNVLFLKVDTDELKSV 83

Query: 89  AEKYGVSGFPTLKFFPKGNKDGEE 112
           A  + +   PT  F     K+G+ 
Sbjct: 84  ASDWAIQAMPTFMFL----KEGKI 103

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} Length = 130

 Score = 76.7 bits (189), Expect = 4e-18
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 11/92 (11%)

Query: 25  VVVLTEDNFEKEVGQ----DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           +    +D F+ ++ +     +  +++F A WCG C+ +AP + + A  F      V   +
Sbjct: 17  IACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP---GAVFLKV 73

Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEE 112
           D D+ K++AEKY V   PT  F     KDG E
Sbjct: 74  DVDELKEVAEKYNVEAMPTFLFI----KDGAE 101

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112

 Score = 75.5 bits (186), Expect = 7e-18
 Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 5/82 (6%)

Query: 31  DNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAE 90
                    D+  ++ F+  W   CK L   +E ++   +   +V   ++DAD+  +++E
Sbjct: 12  TYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPS-NSNVSFLSIDADENSEISE 70

Query: 91  KYGVSGFPTLKFFPKGNKDGEE 112
            + +S  P           G  
Sbjct: 71  LFEISAVPYFIII----HKGTI 88

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A Length = 226

 Score = 78.2 bits (192), Expect = 8e-18
 Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 4/105 (3%)

Query: 28  LTEDNFEKEVGQDRGALVE-FYAPWCGHCKNLAPTYEKVAAAF--TLEDDVVVANLDADK 84
           L ++  +     D+   +  F  P C +C        K A       +  ++   ++A +
Sbjct: 121 LMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE 180

Query: 85  YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK 129
           Y + A++Y V   P +     G +D  E+ G    + F+  +   
Sbjct: 181 YPEWADQYNVMAVPKIVIQVNG-EDRVEFEGAYPEKMFLEKLLSA 224

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A Length = 226

 Score = 45.1 bits (106), Expect = 5e-06
 Identities = 24/121 (19%), Positives = 49/121 (40%), Gaps = 4/121 (3%)

Query: 44  LVEFYAP-WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 102
           L+ F     C +C  L    ++++   T +    + + D  + K+LA++Y +   P    
Sbjct: 26  LIVFVRKDHCQYCDQLKQLVQELSEL-TDKLSYEIVDFDTPEGKELAKRYRIDRAPATTI 84

Query: 103 FPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDA--LVKEFVAA 160
              G   G  Y G     +F +F+ +    SR+    +  T   + ++D    +  FV  
Sbjct: 85  TQDGKDFGVRYFGLPAGHEFAAFLEDIVDVSREETNLMDETKQAIRNIDQDVRILVFVTP 144

Query: 161 S 161
           +
Sbjct: 145 T 145

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130

 Score = 76.0 bits (187), Expect = 8e-18
 Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 15/122 (12%)

Query: 18  VSALADDVVVLTEDNFEKEV----GQDRGALVEFYAPWCGHCKNLAPT--YEKVAAAFTL 71
           +S    D +   E +F + +     +D+   V+ +  WCG CK L+     + + A +  
Sbjct: 1   MSLAQADGIAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADY-F 59

Query: 72  EDDVVVANLDADKY--KDLAEKYGVSGFPTLKFFPKGNKDGEEYG---GGRDLEDFVSFI 126
               V   +D +K    +L +KYGV  +PTL F    N  GE      G  D  + +  +
Sbjct: 60  NRHFVNLKMDMEKGEGVELRKKYGVHAYPTLLFI---NSSGEVVYRLVGAEDAPELLKKV 116

Query: 127 NE 128
             
Sbjct: 117 KL 118

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* Length = 122

 Score = 75.5 bits (186), Expect = 9e-18
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 7/83 (8%)

Query: 30  EDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLA 89
               E+     +  +++F A WCG C+ +AP +  +A  F    + V   +D D+ K +A
Sbjct: 24  TMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKF---PNAVFLKVDVDELKPIA 80

Query: 90  EKYGVSGFPTLKFFPKGNKDGEE 112
           E++ V   PT  F     K+G+ 
Sbjct: 81  EQFSVEAMPTFLFM----KEGDV 99

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 Length = 123

 Score = 75.2 bits (185), Expect = 1e-17
 Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 21/105 (20%)

Query: 22  ADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCG--------------HCKNLAPTYEKVA 66
           +D ++ LT+D+F+ +V + D   LV+F+A WCG               CK +AP  +++A
Sbjct: 2   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIA 61

Query: 67  AAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGE 111
             +  +  + VA L+ D+    A KYG+ G PTL  F    K+GE
Sbjct: 62  DEY--QGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF----KNGE 100

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} PDB: 1xbs_A Length = 149

 Score = 75.8 bits (186), Expect = 2e-17
 Identities = 19/125 (15%), Positives = 42/125 (33%), Gaps = 13/125 (10%)

Query: 29  TEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 86
           ++   ++ +    ++  ++ F       C  L     K ++         +  +D D+  
Sbjct: 10  SKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDL--SKMAAIYLVDVDQTA 67

Query: 87  DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGR---------DLEDFVSFINEKCGTSRDGK 137
              + + +S  P+  FF  G     +YG              +DF+  I      +  GK
Sbjct: 68  VYTQYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGAMRGK 127

Query: 138 GQLTS 142
             + S
Sbjct: 128 LIVQS 132

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 Length = 85

 Score = 73.5 bits (181), Expect = 2e-17
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 7/86 (8%)

Query: 44  LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 103
           +  F +P C HC       E+VA      D V V  ++  +    A +YG+   PT+   
Sbjct: 6   IELFTSPMCPHCPAAKRVVEEVANEM--PDAVEVEYINVMENPQKAMEYGIMAVPTIVIN 63

Query: 104 PKGNKDGEEYGGGRDLEDFVSFINEK 129
                D  E+ G    E  V  I ++
Sbjct: 64  ----GDV-EFIGAPTKEALVEAIKKR 84

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A Length = 139

 Score = 74.8 bits (184), Expect = 2e-17
 Identities = 17/88 (19%), Positives = 41/88 (46%), Gaps = 7/88 (7%)

Query: 25  VVVLTEDNFEKEV----GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
            ++ T++ +++++       +  L  F A WCG  + +AP Y +++  +     ++   +
Sbjct: 27  HLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENY---PSLMFLVI 83

Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKGNK 108
           D D+  D +  + +   PT  F   G +
Sbjct: 84  DVDELSDFSASWEIKATPTFFFLRDGQQ 111

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287

 Score = 77.5 bits (191), Expect = 4e-17
 Identities = 33/214 (15%), Positives = 68/214 (31%), Gaps = 23/214 (10%)

Query: 22  ADDVVVLTEDNFEK--EVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN 79
            +++V + E N ++  E       L  F++    HC  L P  E +AA +      ++A 
Sbjct: 6   VENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQY--NGQFILAK 63

Query: 80  LDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGG------GRDLEDFVSFINEKCGTS 133
           LD D  + +A ++G+   PT+  F    ++G+   G         +   +  +  +    
Sbjct: 64  LDCDAEQMIAAQFGLRAIPTVYLF----QNGQPVDGFQGPQPEEAIRALLDXVLPREEEL 119

Query: 134 RDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEGSTARHGKIYLKV 193
              +               L+ +    S    +      E  + +     A    +   +
Sbjct: 120 XAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAE--AVLXTI 177

Query: 194 AKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADE 227
                D            L   ++    AA   E
Sbjct: 178 PLQDQD-------TRYQGLVAQIELLXQAADTPE 204

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 74.9 bits (184), Expect = 1e-16
 Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 3/114 (2%)

Query: 16  FFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDV 75
           F +     +++ L    F+  V       V FY+P C HC +LAPT+ + A    ++  +
Sbjct: 90  FGIYDDDPEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAK--EVDGLL 147

Query: 76  VVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK 129
            +  ++    + L    GV+ +P+L  F  G     +Y G R  E  V+F  + 
Sbjct: 148 RIGAVNCGDDRMLCRMKGVNSYPSLFIFRSG-MAAVKYNGDRSKESLVAFAMQH 200

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 Length = 85

 Score = 68.9 bits (169), Expect = 1e-15
 Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 9/87 (10%)

Query: 44  LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 103
           +  F +P C +C       ++    F   D + V  +D    ++ A +YG+   P +   
Sbjct: 5   IEVFTSPTCPYCPMAIEVVDEAKKEF--GDKIDVEKIDIMVDREKAIEYGLMAVPAIAI- 61

Query: 104 PKGNKDGE-EYGGGRDLEDFVSFINEK 129
                +G   + G    E+    IN++
Sbjct: 62  -----NGVVRFVGAPSREELFEAINDE 83

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Length = 164

 Score = 63.9 bits (155), Expect = 5e-13
 Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 3/98 (3%)

Query: 30  EDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLA 89
           ED  ++        +V  +  WCG CK L P + +      L  + V+ NL+ ++ +   
Sbjct: 36  EDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEE-EPKD 94

Query: 90  EKYGVSG--FPTLKFFPKGNKDGEEYGGGRDLEDFVSF 125
           E +   G   P + F     K   E         +  F
Sbjct: 95  EDFSPDGGYIPRILFLDPSGKVHPEIINENGNPSYKYF 132

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 135

 Score = 62.6 bits (152), Expect = 9e-13
 Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 15/114 (13%)

Query: 24  DVVVLTEDNFEKEV---GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           ++  ++ + +  EV    +D   ++  Y      C  +      +A  F    +      
Sbjct: 11  ELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP---ETKFVKA 67

Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG----GGRD--LEDFVSFINE 128
             +      E Y  +  PT+  +  G  +G+  G    GG +  LE+    ++E
Sbjct: 68  IVN---SCIEHYHDNCLPTIFVYKNGQIEGKFIGIIECGGINLKLEELEWKLSE 118

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Length = 130

 Score = 62.0 bits (151), Expect = 1e-12
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 10/107 (9%)

Query: 30  EDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDADKY- 85
            +         R  +V F++  C +C+ +         V+    LE   VVA++  D   
Sbjct: 9   PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRL--LEARFVVASVSVDTPE 66

Query: 86  -KDLAEKYGVSGFPTLKFF-PKGNKDGEEYG--GGRDLEDFVSFINE 128
            ++LA +Y V G PT  F  PK     E     G R   +F+  + +
Sbjct: 67  GQELARRYRVPGTPTFVFLVPKAGAWEEVGRLFGSRPRAEFLKELRQ 113

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} Length = 118

 Score = 60.9 bits (148), Expect = 3e-12
 Identities = 17/114 (14%), Positives = 39/114 (34%), Gaps = 15/114 (13%)

Query: 24  DVVVLTEDNFEKEV---GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           ++  ++ + +  EV    +D   ++  Y      C  +      +A  F    +      
Sbjct: 4   ELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFP---ETKFVKA 60

Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG----GGRD--LEDFVSFINE 128
             +      + Y  +  PT+  +  G  + +  G    GG +  LE+    + E
Sbjct: 61  IVN---SCIQHYHDNCLPTIFVYKNGQIEAKFIGIIECGGINLKLEELEWKLAE 111

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} Length = 133

 Score = 59.9 bits (145), Expect = 9e-12
 Identities = 19/112 (16%), Positives = 33/112 (29%), Gaps = 19/112 (16%)

Query: 33  FEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD---ADKYKDLA 89
                   +  L+ F A WC  C+ L  +         +     V  +D    D+  +L+
Sbjct: 22  LAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELS 81

Query: 90  EKYGV---SGFPTLKFFPKGNKDGEEY----------GGGRDLEDFVSFINE 128
           + YG     G P +      N DG+                  +    F  +
Sbjct: 82  QAYGDPIQDGIPAVVVV---NSDGKVRYTTKGGELANARKMSDQGIYDFFAK 130

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 Length = 118

 Score = 59.2 bits (143), Expect = 1e-11
 Identities = 16/108 (14%), Positives = 33/108 (30%), Gaps = 7/108 (6%)

Query: 24  DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA- 82
           D+ V T    ++ + +   A        C +C+  A T   V A    +  +   N +  
Sbjct: 13  DLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAE--TKAHIYFINSEEP 70

Query: 83  ---DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN 127
              +  +    +YG+   P       G  +          ++   F  
Sbjct: 71  SQLNDLQAFRSRYGIPTVPGFVHITDGQINV-RCDSSMSAQEIKDFAG 117

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} Length = 243

 Score = 58.7 bits (141), Expect = 1e-10
 Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 8/131 (6%)

Query: 15  LFFVSALADDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVA--AAFTL 71
           +  +  L++D   L +   E          +     P C +C          A  A    
Sbjct: 112 VEVIMRLSEDESGLEDATKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQG 171

Query: 72  EDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG 131
              ++   ++A +  D+A+KYGV   P++            + G    EDF+ ++     
Sbjct: 172 NPVILSEAVEAYENPDIADKYGVMSVPSIAI-----NGYLVFVGVPYEEDFLDYVKSAAE 226

Query: 132 TSRDGKGQLTS 142
                KG + +
Sbjct: 227 GRLTVKGPIRA 237

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} Length = 137

 Score = 52.4 bits (125), Expect = 6e-09
 Identities = 18/108 (16%), Positives = 40/108 (37%), Gaps = 12/108 (11%)

Query: 27  VLTEDNFEKEVGQDRGALVEFYAP---WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
           ++ E   +  +      +V F+           +LA    ++  AF     +V A + A+
Sbjct: 19  LVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAF--PGRLVAAEVAAE 76

Query: 84  KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG---GGRDLEDFVSFINE 128
             + L  ++GV+  P+L       +     G     +D   +++ I  
Sbjct: 77  AERGLMARFGVAVCPSLAVV----QPERTLGVIAKIQDWSSYLAQIGA 120

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} Length = 154

 Score = 51.8 bits (124), Expect = 9e-09
 Identities = 17/116 (14%), Positives = 37/116 (31%), Gaps = 20/116 (17%)

Query: 30  EDNFEKEVGQDRGALVEF-YAPWCGHCKNLAP-TYEKVAAAFTLEDDVVVANLDADK--- 84
            +  E      +   + F  + WC  C  +     +           + +  +D  +   
Sbjct: 37  AEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNH 96

Query: 85  --------YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG----RDLEDFVSFINE 128
                    ++L  +Y V+GFP L F    + +G++             +VS +  
Sbjct: 97  QPEEQRQKNQELKAQYKVTGFPELVFI---DAEGKQLARMGFEPGGGAAYVSKVKS 149

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} Length = 106

 Score = 50.9 bits (121), Expect = 1e-08
 Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 8/77 (10%)

Query: 45  VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFP 104
             + A WC HC++    +          +     N           + G++ +PT     
Sbjct: 17  TMYGAYWCPHCQDQKELFGAAFDQVPYVE--CSPNGPGTPQAQECTEAGITSYPTWII-- 72

Query: 105 KGNKDGEEYGGGRDLED 121
               +G  Y G R LE 
Sbjct: 73  ----NGRTYTGVRSLEA 85

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} Length = 291

 Score = 52.0 bits (123), Expect = 3e-08
 Identities = 21/113 (18%), Positives = 34/113 (30%), Gaps = 10/113 (8%)

Query: 9   ALGTLTLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAA 68
            L  +T   V A                + Q  G +  + A WC HC++    +      
Sbjct: 168 FLTLVTTIGVYANQVPPPSPLAVGLAAHLRQIGGTM--YGAYWCPHCQDQKELFGAAFDQ 225

Query: 69  FTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLED 121
               +     N           + G++ +PT         +G  Y G R LE 
Sbjct: 226 VPYVE--CSPNGPGTPQAQECTEAGITSYPTWII------NGRTYTGVRSLEA 270

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C Length = 245

 Score = 49.3 bits (117), Expect = 2e-07
 Identities = 19/111 (17%), Positives = 36/111 (32%), Gaps = 13/111 (11%)

Query: 27  VLTEDNFEKEV---GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
           + + + F + +    +    +V  Y      C  L  +   +AA +     V    + A 
Sbjct: 117 LESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYP---MVKFCKIKAS 173

Query: 84  KYKDLAEKYGVSGFPTLKFFPKGNKDG------EEYGGGRDLEDFVSFINE 128
                 +++     PTL  +  G          E+        D  SF+NE
Sbjct: 174 N-TGAGDRFSSDVLPTLLVYKGGELLSNFISVTEQLAEEFFTGDVESFLNE 223

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii} Length = 160

 Score = 47.8 bits (113), Expect = 4e-07
 Identities = 19/112 (16%), Positives = 42/112 (37%), Gaps = 11/112 (9%)

Query: 40  DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
           +R   + F   +   C  +     KVA    +++  V+  +D  +  D    Y +    +
Sbjct: 41  ERLVCIRFGHDYDPDCMKMDELLYKVAD--DIKNFCVIYLVDITEVPDFNTMYELYDPVS 98

Query: 100 LKFFPKGNKDGEEYGGG---------RDLEDFVSFINEKCGTSRDGKGQLTS 142
           + FF +      + G G          + ++F+  +      +R G+G + S
Sbjct: 99  VMFFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRGARKGRGLVIS 150

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* Length = 116

 Score = 45.8 bits (108), Expect = 9e-07
 Identities = 17/92 (18%), Positives = 24/92 (26%), Gaps = 13/92 (14%)

Query: 44  LVEFYAPWCGHCK----NLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT 99
           L+ F  P C +C      +AP Y            V    +       L     V+  PT
Sbjct: 22  LLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAP--VQRLQMRDPLPPGLELARPVTFTPT 79

Query: 100 LKFFPKGNKDGEEYG---GGRDLEDFVSFINE 128
                       E G   G    + F   +  
Sbjct: 80  FVLM----AGDVESGRLEGYPGEDFFWPMLAR 107

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} Length = 151

 Score = 45.4 bits (107), Expect = 2e-06
 Identities = 9/86 (10%), Positives = 23/86 (26%), Gaps = 1/86 (1%)

Query: 30  EDNFEKEVGQDRGALVEFYAPWCGHCKNLAP-TYEKVAAAFTLEDDVVVANLDADKYKDL 88
           E+         +  +V  +   C + + L     +        ++  ++ NL  +     
Sbjct: 34  EEGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDKN 93

Query: 89  AEKYGVSGFPTLKFFPKGNKDGEEYG 114
               G      +   P      +  G
Sbjct: 94  LSPDGQYVPRIMFVDPSLTVRADIAG 119

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148

 Score = 43.5 bits (103), Expect = 7e-06
 Identities = 18/113 (15%), Positives = 34/113 (30%), Gaps = 30/113 (26%)

Query: 44  LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA-NLDADKYK---------------- 86
           ++ F+   CGHC+   P           +   V A N++    +                
Sbjct: 35  ILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNV 94

Query: 87  -------DLAEKYGVSGFPTLKFFPKGNKDG---EEYGGGRDLEDFVSFINEK 129
                  D    Y +   P L      +K+     +  G  +L+DF+    + 
Sbjct: 95  RDSKNHTDFKITYDIYATPVLYVL---DKNKVIIAKRIGYENLDDFLVQYEKS 144

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Length = 158

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 26/108 (24%)

Query: 44  LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA-NLD-----------------ADKY 85
           LV F+A WC +C++  P+ +++  +F   D VV+A N++                 +D  
Sbjct: 45  LVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDAT 104

Query: 86  KDLAEKYGVSGFPTLKFFPKGNKDGEEYG---GGRDLED--FVSFINE 128
             + ++YG +  P        ++ G       GG + +    VS++  
Sbjct: 105 GQVQQRYGANRLPDTFIV---DRKGIIRQRVTGGIEWDAPKVVSYLKS 149

>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea} Length = 216

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 8/83 (9%)

Query: 53  GHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD-------LAEKYGVSGFPTLKFFPK 105
                     +K+A    + +        +D+ K           ++G+SGFP L     
Sbjct: 126 QEDVAQLAILKKLAVDLGIPESRFTPVFQSDEAKQRTLAGFQRVAQWGISGFPAL-VVES 184

Query: 106 GNKDGEEYGGGRDLEDFVSFINE 128
           G        G R +E     ++ 
Sbjct: 185 GTDRYLITTGYRPIEALRQLLDT 207

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} Length = 172

 Score = 42.0 bits (98), Expect = 4e-05
 Identities = 18/127 (14%), Positives = 41/127 (32%), Gaps = 28/127 (22%)

Query: 30  EDNFEKEVGQDRGALVEFYAPWCGHCKNL-APTYEKVAAAFTLEDDVVVANLDADKYKDL 88
           +   E     ++  +++F    C +C+ +    +     +  + +D V+  L  D    L
Sbjct: 37  DLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPL 96

Query: 89  AE--------------------------KYGVSGFPTLKFF-PKGNKDGEEYGGGRDLED 121
            E                          K+G +  P       +GN   + Y    D+  
Sbjct: 97  TEPVKIMENGTERTLRTVGDKWSYLQRVKFGANAQPFYVLIDNEGNPLNKSYAYDEDISK 156

Query: 122 FVSFINE 128
           +++F+  
Sbjct: 157 YINFLQT 163

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Length = 164

 Score = 41.7 bits (98), Expect = 5e-05
 Identities = 17/115 (14%), Positives = 34/115 (29%), Gaps = 33/115 (28%)

Query: 44  LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA-NLDADKYKD--------------- 87
           L++F+A WC  C +     EK A         ++        ++                
Sbjct: 42  LIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYP 101

Query: 88  -----------LAEKYGVSGFPTLKFFPKGNKDGEEYG---GGRDLEDFVSFINE 128
                      +A+   +S +P+        KDG+      G  +    ++ I  
Sbjct: 102 KLPVVTDNGGTIAQNLNISVYPSWALI---GKDGDVQRIVKGSINEAQALALIRN 153

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 Length = 217

 Score = 41.9 bits (98), Expect = 5e-05
 Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 19/118 (16%)

Query: 27  VLTEDNFEKEV---GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
           + T + F + +    +    +V  Y      C  L  + E +AA +     V    + A 
Sbjct: 104 LETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP---MVKFCKIRAS 160

Query: 84  KYKDLAEKYGVSGFPTLKFFPKGNKDG-----EEYGGGR----DLEDFVS---FINEK 129
                 +++     PTL  +  G          E         D+E F++    + E+
Sbjct: 161 N-TGAGDRFSSDVLPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEYGLLPER 217

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Length = 146

 Score = 41.2 bits (97), Expect = 6e-05
 Identities = 16/104 (15%), Positives = 27/104 (25%), Gaps = 25/104 (24%)

Query: 44  LVEFYAPWCGHCK----NLAPTYEK--------------------VAAAFTLEDDVVVAN 79
              F A WC   +     L   Y+K                     A  F     + V  
Sbjct: 32  FFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPF 91

Query: 80  LDADKYKDLAEKYGVSGFPTLKFF-PKGNKDGEEYGGGRDLEDF 122
             ++  + L++ + V   PTL                   ++D 
Sbjct: 92  AQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLVKDP 135

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Length = 154

 Score = 40.8 bits (96), Expect = 7e-05
 Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 30/120 (25%)

Query: 44  LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA-NLD--------------------- 81
           +V F+A WC  C+   P+  ++ AA   +   ++  ++D                     
Sbjct: 32  IVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVL 91

Query: 82  ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG---GGRDLED--FVSFINEKCGTSRDG 136
            D  K + + YG +G P        ++ G       G  + +    ++F+N +   +R+G
Sbjct: 92  LDADKRVGKLYGTTGVPETFVI---DRHGVILKKVVGAMEWDHPEVIAFLNNELSKAREG 148

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 Length = 153

 Score = 40.7 bits (95), Expect = 9e-05
 Identities = 12/94 (12%), Positives = 32/94 (34%), Gaps = 5/94 (5%)

Query: 39  QDRGALVEFYAPWCGHCKNLAP-TYEKVAAAFTLEDDVVVANLDADKY--KDLAEKYGVS 95
           Q++  ++         C+ L    +   A    + +  +   +  D    +   + Y + 
Sbjct: 41  QNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLG 100

Query: 96  GFPTLKFF-PKGNKDGEEYGGGRDLEDFVSFINE 128
            FP +    P+  +   E+    D+  F+  +  
Sbjct: 101 DFPYVSILDPRTGQKLVEW-HQLDVSSFLDQVTG 133

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136

 Score = 40.3 bits (95), Expect = 9e-05
 Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 25/107 (23%)

Query: 44  LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD--------------------AD 83
           ++ F+APWC  C+  AP   +VAA+      V VA LD                    AD
Sbjct: 29  VLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLAD 88

Query: 84  KYKDLAEKYGVSGFPTLKFFPKGNKDG--EEYGGGRDLEDFVSFINE 128
               +   +GV+  P   F    +  G  +   G    ++    +  
Sbjct: 89  TDGSVWANFGVTQQPAYAFV---DPHGNVDVVRGRMSQDELTRRVTA 132

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A Length = 140

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 15/107 (14%), Positives = 34/107 (31%), Gaps = 9/107 (8%)

Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
           V     D++  +   D   L+           +      ++   F  +    VA  D ++
Sbjct: 22  VSESRLDDWLTQAP-DGVVLLSSDPKRTPEVSDNPVMIGELLHEFP-DYTWQVAIADLEQ 79

Query: 85  YKDLAEKYGVSGFPTLKFFPKGNKDGEEYG---GGRDLEDFVSFINE 128
            + + +++G   FP    F      G   G   G     + ++ +  
Sbjct: 80  SEAIGDRFGAFRFPATLVF----TGGNYRGVLNGIHPWAELINLMRG 122

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Length = 153

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 21/110 (19%), Positives = 34/110 (30%), Gaps = 28/110 (25%)

Query: 44  LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA-NLDADKYK---------------- 86
           L+ F+ P C  C +  P   K A  +  ++  V+A     D  +                
Sbjct: 32  LINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVM 91

Query: 87  -----DLAEKYGVSGFPTLKFFPKGNKDGE---EYGGGRDLEDFVSFINE 128
                 + + +G   +PT        K GE    Y G  D       I+ 
Sbjct: 92  YDADKAVGQAFGTQVYPTSVLI---GKKGEILKTYVGEPDFGKLYQEIDT 138

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A* Length = 178

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 19/138 (13%), Positives = 39/138 (28%), Gaps = 27/138 (19%)

Query: 23  DDVVVLTEDNFEKEVGQDRG--ALVEFYAPW-------CGHCKNLAPTYEKVAAAFTL-- 71
             V+ +T DN+        G   ++             C  C +   TY  VA       
Sbjct: 18  TGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQA 77

Query: 72  -EDDVVVANLDADKYKDLAEKYGVSGFPTLKFF-PKGNKDGEEY--------------GG 115
            +   +   +D ++   L +   +   P L  + P  +    ++                
Sbjct: 78  PQSLNLFFTVDVNEVPQLVKDLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPEN 137

Query: 116 GRDLEDFVSFINEKCGTS 133
             +   F  F+ +    S
Sbjct: 138 AENTLQFGDFLAKILNIS 155

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 36/251 (14%), Positives = 76/251 (30%), Gaps = 73/251 (29%)

Query: 7   WLALGTLTLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPW--CGHC-------KN 57
           W+AL               V   +   + ++         F   W    +C       + 
Sbjct: 165 WVAL--------DVCLSYKV---QCKMDFKI---------F---WLNLKNCNSPETVLEM 201

Query: 58  LAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG--------NKD 109
           L     ++   +T   D    +    K +  + +  +      K +           N  
Sbjct: 202 LQKLLYQIDPNWTSRSD----HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA- 256

Query: 110 GEEYGGGRDLEDFVSFINEKCG---TSRDGKG---QLTSTAGIVASLDALVKEFVAASGD 163
                  +    F    N  C    T+R  K     L++      SLD         + D
Sbjct: 257 -------KAWNAF----NLSCKILLTTRF-KQVTDFLSAATTTHISLDHHSMTL---TPD 301

Query: 164 EKKAVFSK-IERGV-----EVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLD 217
           E K++  K ++        EVL  +  R   I   + ++ +    ++     D+L  +++
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI-RDGLATWDNWKHVNCDKLTTIIE 360

Query: 218 KSISAAKADEF 228
            S++  +  E+
Sbjct: 361 SSLNVLEPAEY 371

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 18/110 (16%), Positives = 29/110 (26%), Gaps = 29/110 (26%)

Query: 44  LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD---------------------- 81
           ++ F+ PWC  C   AP+  +VAAA      V    +                       
Sbjct: 28  VLWFWTPWCPFCNAEAPSLSQVAAAN---PAVTFVGIATRADVGAMQSFVSKYNLNFTNL 84

Query: 82  ADKYKDLAEKYGVSGFPTLKFF--PKGN-KDGEEYGGGRDLEDFVSFINE 128
            D    +  +Y V   P    F    G              ++    +  
Sbjct: 85  NDADGVIWARYNVPWQPA-FVFYRADGTSTFVNNPTAAMSQDELSGRVAA 133

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Length = 138

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 32/114 (28%)

Query: 44  LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA-NLDADKYK---------------- 86
            ++F+A WC  C    P  +++A     +  V+   +      +                
Sbjct: 26  YLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKN 85

Query: 87  ---------DLAEKYGVSGFPTLKFFPKGNKDGEEYG---GGRDLEDFVSFINE 128
                     L E YGV  +PT  F    +K+G+      G  + +  +  + E
Sbjct: 86  LPVLVDPSGKLLETYGVRSYPTQAFI---DKEGKLVKTHPGFMEKDAILQTLKE 136

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 12/83 (14%), Positives = 29/83 (34%), Gaps = 26/83 (31%)

Query: 44  LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDD---VVVA-NLDADKYK------------- 86
           ++ FY P C +C+     + ++ A   + ++    V+A   D ++ +             
Sbjct: 31  MLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWI 90

Query: 87  ---------DLAEKYGVSGFPTL 100
                       + Y +   PT+
Sbjct: 91  VGWNKAGDIRTRQLYDIRATPTI 113

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 10/83 (12%), Positives = 19/83 (22%), Gaps = 26/83 (31%)

Query: 44  LVEFYAPWCGHCKNLAP---TYEKVAAAFTLEDDVVVA-NLDADKYK------------- 86
           L+    P C  C  +         +      +   V++   D +  +             
Sbjct: 35  LLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWT 94

Query: 87  ---------DLAEKYGVSGFPTL 100
                         Y +   PTL
Sbjct: 95  NGYDKELVIKNKNLYDLRAIPTL 117

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} Length = 145

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 21/117 (17%), Positives = 36/117 (30%), Gaps = 32/117 (27%)

Query: 39  QDRG--ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA-NLDA------------- 82
            ++G   ++ F+  WC  CK   P ++    A   +   +V  NL               
Sbjct: 31  PNKGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIK 90

Query: 83  ----------DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG---GGRDLEDFVSFI 126
                     D   +L ++Y +   PT       N+ GE      G    E    + 
Sbjct: 91  ANKLTFPIVLDSKGELMKEYHIITIPTSFLL---NEKGEIEKTKIGPMTAEQLKEWT 144

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 17/110 (15%), Positives = 34/110 (30%), Gaps = 28/110 (25%)

Query: 44  LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA-NLDADKYK---------------- 86
            ++ +A WCG C+   P  +++   +  +D   V+ + D +K                  
Sbjct: 34  YIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLH 93

Query: 87  -----DLAEKYGVSGFPTLKFFPKGNKDG---EEYGGGRDLEDFVSFINE 128
                   + Y ++G P        ++DG                   NE
Sbjct: 94  MGTDRTFMDAYLINGIPRFILL---DRDGKIISANMTRPSDPKTAEKFNE 140

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	239
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	100.0
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	100.0
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.93
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.92
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.9
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.9
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.9
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.89
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.89
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.89
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.89
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.89
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.89
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.89
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	99.89
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.89
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.89
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.89
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.89
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.88
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.88
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.88
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.88
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.88
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.88
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.88
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.88
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.88
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.88
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.88
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.88
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.88
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.88
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.88
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.88
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.88
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.88
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.88
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.88
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.88
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.88
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.88
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.88
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.88
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.87
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.87
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.87
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.87
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.87
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.87
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.87
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.86
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.86
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.86
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.86
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.86
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.86
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.86
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.86
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.85
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.85
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.85
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.85
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.85
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.85
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.85
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.85
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.85
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.85
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.84
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.84
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.84
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.84
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.84
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.84
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.84
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.84
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.83
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.83
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.83
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.83
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.82
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.82
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.82
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.82
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.82
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.82
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.82
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.81
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.8
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.8
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.8
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.79
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	99.67
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.78
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.78
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.77
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.77
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.77
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.77
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.76
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.75
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.75
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.74
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	99.74
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.74
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.73
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.73
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.73
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	99.57
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.71
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	99.71
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.7
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.7
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.7
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.69
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	99.69
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.68
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.68
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.68
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.67
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.67
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.67
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.66
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.66
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.65
3ira_A	173	Conserved protein; methanosarcina mazei,structural	99.64
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.64
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.64
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.63
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.62
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.61
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.61
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	99.61
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.61
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.6
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.6
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.59
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.58
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.58
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.57
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.57
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.56
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.56
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.55
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.55
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.55
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.54
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	99.54
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.54
1ttz_A	87	Conserved hypothetical protein; structural genomic	99.53
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.53
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.53
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.52
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.51
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.51
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	99.5
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.5
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	99.5
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.49
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.47
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.47
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.46
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	99.46
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.44
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	99.16
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	99.39
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.38
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	99.38
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	99.38
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.38
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	99.06
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	99.35
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	99.35
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	99.33
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	99.33
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	99.33
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	99.32
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	99.31
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	99.29
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	99.27
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	99.26
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	99.26
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	99.25
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	99.25
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	99.25
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	99.24
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	99.24
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	99.22
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.21
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	99.21
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	99.19
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	99.19
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.19
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	99.15
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	99.13
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	99.13
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	99.12
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	99.12
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	99.11
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	99.1
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	99.09
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	99.09
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	99.07
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	99.04
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	99.04
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	99.01
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	99.0
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	98.99
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	98.95
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	98.94
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	98.94
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	98.94
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	98.93
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	98.9
3me7_A	170	Putative uncharacterized protein; electron transfe	98.89
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	98.87
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	98.87
1kte_A	105	Thioltransferase; redox-active center, electron tr	98.87
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	98.85
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	98.85
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	98.84
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	98.82
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	98.82
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	98.82
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	98.8
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	98.8
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	98.78
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	98.77
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	98.77
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	98.74
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	98.72
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	98.72
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	98.7
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	98.69
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	98.67
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	98.67
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	98.67
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	98.66
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	98.65
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	98.64
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	98.63
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	98.62
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	98.61
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	98.61
1z6m_A	175	Conserved hypothetical protein; structural genomic	98.6
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	98.59
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	98.58
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	98.57
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	98.55
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	98.54
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	98.54
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	98.54
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	98.53
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	98.52
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	98.51
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	98.5
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	98.48
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	98.44
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	98.44
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	98.43
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	98.42
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	98.4
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	98.38
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	98.37
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	98.36
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	98.36
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	98.35
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	98.34
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	98.3
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	98.29
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	98.25
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	98.24
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	98.23
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	98.23
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	98.2
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	98.19
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	98.09
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	98.07
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	97.89
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	97.81
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	97.73
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	97.73
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	97.64
3gmf_A	205	Protein-disulfide isomerase; oxidoreductase, PSI-2	97.63
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	97.6
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	97.59
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	97.58
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	97.53
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	97.42
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	97.36
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	97.36
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	97.3
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	97.29
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	97.25
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	97.24
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	97.2
3kzq_A	208	Putative uncharacterized protein VP2116; protein w	97.14
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	97.12
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	97.07
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	97.04
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	96.97
2in3_A	216	Hypothetical protein; DSBA family, FRNE-like subfa	96.84
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	96.55
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	96.14
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	95.77
2wul_A	118	Glutaredoxin related protein 5; chromosome 14 open	95.63
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	95.25
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	95.2
3tdg_A	273	DSBG, putative uncharacterized protein; thioredoxi	95.13
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	94.48
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	94.36
2kok_A	120	Arsenate reductase; brucellosis, zoonotic, oxidore	94.15
1z3e_A	132	Regulatory protein SPX; bacterial transcription re	91.9
1t4y_A	105	Adaptive-response sensory-kinase SASA; alpha/beta	91.69
2g2q_A	124	Glutaredoxin-2; thioredoxin-fold, oxidoreductase,	89.83
1rw1_A	114	Conserved hypothetical protein YFFB; thioredoxin f	89.8
3l78_A	120	Regulatory protein SPX; transcription, transcripti	89.56
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	88.79
3fz4_A	120	Putative arsenate reductase; APC61768, structural	87.72
1s3c_A	141	Arsenate reductase; ARSC, arsenite, oxidoreductase	87.33
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	87.14
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	85.45
3gkx_A	120	Putative ARSC family related protein; ARSC family	82.29

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=100.00  E-value=9.4e-44  Score=287.48  Aligned_cols=209  Identities=22%  Similarity=0.389  Sum_probs=186.9

Q ss_pred             hhcCCCcEEcChhhHHHHhcCCCcEEEEEE--CCCChHHhhHhHHHHHHHHHccC-CCCeEEEEEeCcc-----chhHHH
Q 026412           19 SALADDVVVLTEDNFEKEVGQDRGALVEFY--APWCGHCKNLAPTYEKVAAAFTL-EDDVVVANLDADK-----YKDLAE   90 (239)
Q Consensus        19 ~~~~~~v~~l~~~~f~~~~~~~k~vlV~F~--a~wC~~C~~~~~~~~~~a~~~~~-~~~v~~~~vd~~~-----~~~l~~   90 (239)
                      +.....+..+++.+|++++.++++++|.||  ||||+    +.|.|+++++.+.. .+++.|+.|||++     ++++|+
T Consensus        12 ~~~~~~v~~Lt~~nF~~vi~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~   87 (248)
T 2c0g_A           12 SVTCTGCVDLDELSFEKTVERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGD   87 (248)
T ss_dssp             ---CTTCEECCTTTHHHHHTTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHH
T ss_pred             CCCCCCcEECCHHHHHHHHhcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHH
Confidence            344677899999999998888899999999  99998    99999999999865 4679999999998     899999


Q ss_pred             HcCCC--CCCeEEEEeCCC-cCcccc--CCCCCHHHHHHHHHHhhCCCCCCCCCcccccchhhhhhHHHHHHHhccchhH
Q 026412           91 KYGVS--GFPTLKFFPKGN-KDGEEY--GGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEK  165 (239)
Q Consensus        91 ~~~i~--~~Pt~~~~~~g~-~~~~~~--~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~  165 (239)
                      +|+|+  ++||+++|+ |. ..+.+|  .|.++.+.|.+||++.++..       ...+|+++.++.++..|+...+++.
T Consensus        88 ~~~V~~~~~PTl~~F~-G~~~~~~~y~~~G~~~~~~L~~fi~~~~~~~-------~~~~g~i~~~d~l~~~f~~~~~~~~  159 (248)
T 2c0g_A           88 RYKVDDKNFPSIFLFK-GNADEYVQLPSHVDVTLDNLKAFVSANTPLY-------IGRDGCIKEFNEVLKNYANIPDAEQ  159 (248)
T ss_dssp             HTTCCTTSCCEEEEES-SSSSSEEECCTTSCCCHHHHHHHHHHHSSCC-------CCCTTCCHHHHHHHTTGGGSCHHHH
T ss_pred             HhCCCcCCCCeEEEEe-CCcCcceeecccCCCCHHHHHHHHHHhhccc-------cCCCCchHHHHHHHHHHhcccchhH
Confidence            99999  999999999 75 357788  99999999999999998732       3568999999999999999887778


Q ss_pred             HHHHHHHHhhhhhhhhh-hhhhhHHHHHHHhhhhhCCCCchHHHHHHHHHHHhccCChhhhhHHHHhhhhhcccC
Q 026412          166 KAVFSKIERGVEVLEGS-TARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTFT  239 (239)
Q Consensus       166 ~~~~~~~~~~~~~~~~~-~~~~~~~y~~~~~k~~~~~~~~~~~e~~rl~~~l~~~~~~~~~~~~~~r~nil~~f~  239 (239)
                      .++++++++....+.++ +..+++||+++|+|++++|++|+++|++||+++|+++++++|+|+|++|+|||++|.
T Consensus       160 ~~~~~~~~~~~~~l~~~~~~~~a~~Y~kvm~ki~~~g~~~~~~E~~Rl~~~l~~~~~~~k~d~~~~r~NIL~~F~  234 (248)
T 2c0g_A          160 LKLIEKLQAKQEQLTDPEQQQNARAYLIYMRKIHEVGYDFLEEETKRLLRLKAGKVTEAKKEELLRKLNILEVFR  234 (248)
T ss_dssp             HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999988887654 367899999999999999999999999999999988899999999999999999995

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=100.00  E-value=1.2e-42  Score=280.14  Aligned_cols=206  Identities=23%  Similarity=0.458  Sum_probs=183.5

Q ss_pred             CCCcEEcChhhHHHHhcCCCcEEEEEEC--CCChHHhhHhHHHHHHHHHccCCCCeEEEEEeC-----ccchhHHHHcCC
Q 026412           22 ADDVVVLTEDNFEKEVGQDRGALVEFYA--PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA-----DKYKDLAEKYGV   94 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a--~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~-----~~~~~l~~~~~i   94 (239)
                      ...+..+++.+|++++.++++++|.|||  |||+    +.|.|+++++.+...+++.|+.||+     +.++++|++|+|
T Consensus         4 ~~~v~~Lt~~nF~~~i~~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V   79 (240)
T 2qc7_A            4 TKGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKL   79 (240)
T ss_dssp             CTTCEECCTTHHHHHGGGCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTC
T ss_pred             CCCceECCHHHHHHHHcCCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCC
Confidence            4578999999999998888999999999  9999    9999999999987656899999995     458999999999


Q ss_pred             C--CCCeEEEEeCCC-cCccccCCCCCHHHHHHHHHHhhCCCCCCCCCcccccchhhhhhHHHHHHHhccc-hhHHHHHH
Q 026412           95 S--GFPTLKFFPKGN-KDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASG-DEKKAVFS  170 (239)
Q Consensus        95 ~--~~Pt~~~~~~g~-~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~-~~~~~~~~  170 (239)
                      +  ++||+++|++|. ..+..|.|.++.+.|.+||++.+        .+...+|+++.++.++..|+.+.+ +.+.++++
T Consensus        80 ~~~~~PTl~~f~~G~~~~~~~y~G~~~~~~L~~fi~~~~--------~~~~~~g~i~~~d~l~~~f~~~~~~~~~~~~~~  151 (240)
T 2qc7_A           80 DKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQG--------VYLGMPGCLPVYDALAGEFIRASGVEARQALLK  151 (240)
T ss_dssp             CGGGCSEEEEEETTCSSCCEECCSCSCHHHHHHHHHHTT--------CCCCCTTCCHHHHHHHHHHHHSCSHHHHHHHTT
T ss_pred             CCCCCCEEEEEeCCCcCcceeecCCCCHHHHHHHHHHhc--------cccCCCCchHHHHHHHHHHHhccchhHHHHHHH
Confidence            9  999999999986 46789999999999999999986        234568999999999999998764 66788888


Q ss_pred             HHHhhhhhhhhhhhhhhHHHHHHHhhhhhCCCCchHHHHHHHHHHHh-ccCChhhhhHHHHhhhhhcccC
Q 026412          171 KIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLD-KSISAAKADEFVLKKNILSTFT  239 (239)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~y~~~~~k~~~~~~~~~~~e~~rl~~~l~-~~~~~~~~~~~~~r~nil~~f~  239 (239)
                      ++++........+..+++||+++|+|++++|++|+++|++||+++|+ ++++++|+|+|+.|+|||++|+
T Consensus       152 ~~~~~~~~~~~~~~~~a~~Y~kvm~ki~~~g~~~~~~E~~Rl~~~l~~~~~~~~k~d~~~~r~NIL~~F~  221 (240)
T 2qc7_A          152 QGQDNLSSVKETQKKWAEQYLKIMGKILDQGEDFPASEMTRIARLIEKNKMSDGKKEELQKSLNILTAFQ  221 (240)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHhhcchhhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            88887766544456899999999999999999999999999999996 7799999999999999999995

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.93  E-value=8e-25  Score=159.71  Aligned_cols=109  Identities=29%  Similarity=0.556  Sum_probs=98.2

Q ss_pred             cCCCcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHcc---CCCCeEEEEEeCccchhHHHHcCCCC
Q 026412           21 LADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFT---LEDDVVVANLDADKYKDLAEKYGVSG   96 (239)
Q Consensus        21 ~~~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~---~~~~v~~~~vd~~~~~~l~~~~~i~~   96 (239)
                      .+..+..+++++|++.+ +++++++|.|||+||++|+.+.|.|+++++.+.   ..+++.++.||++++++++++|+|.+
T Consensus        13 ~~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~   92 (127)
T 3h79_A           13 RPSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVSG   92 (127)
T ss_dssp             CCCCCEECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTTCCS
T ss_pred             CCCceEECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcCCcc
Confidence            35689999999999999 568999999999999999999999999998764   23579999999999999999999999


Q ss_pred             CCeEEEEeCCCcC-ccccCCCCCHHHHHHHHHHh
Q 026412           97 FPTLKFFPKGNKD-GEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus        97 ~Pt~~~~~~g~~~-~~~~~g~~~~~~l~~~l~~~  129 (239)
                      +||+++|++|+.. +..|.|.++.+.+.+||+++
T Consensus        93 ~Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~~  126 (127)
T 3h79_A           93 FPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQN  126 (127)
T ss_dssp             SSEEEEECSSCSSSCEECCSCCCHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCceEecCCccHHHHHHHHHhc
Confidence            9999999988653 47899999999999999875

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.92  E-value=1.3e-24  Score=153.56  Aligned_cols=96  Identities=26%  Similarity=0.698  Sum_probs=86.6

Q ss_pred             ChhhHHHHh--cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCC
Q 026412           29 TEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG  106 (239)
Q Consensus        29 ~~~~f~~~~--~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g  106 (239)
                      +.++|++.+  .++++++|.|||+||+||+.+.|.++++++.++   ++.++.||++++++++++|+|+++||+++|++|
T Consensus         7 ~~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~---~~~~~~vd~d~~~~l~~~~~V~~~PT~~~~~~G   83 (105)
T 3zzx_A            7 DQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMS---DVVFLKVDVDECEDIAQDNQIACMPTFLFMKNG   83 (105)
T ss_dssp             SHHHHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCT---TEEEEEEETTTCHHHHHHTTCCBSSEEEEEETT
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccC---CeEEEEEecccCHHHHHHcCCCeecEEEEEECC
Confidence            568899998  457899999999999999999999999999875   699999999999999999999999999999877


Q ss_pred             CcCccccCCCCCHHHHHHHHHHh
Q 026412          107 NKDGEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus       107 ~~~~~~~~g~~~~~~l~~~l~~~  129 (239)
                       +...++.| .+.+++.+||+++
T Consensus        84 -~~v~~~~G-~~~~~l~~~i~k~  104 (105)
T 3zzx_A           84 -QKLDSLSG-ANYDKLLELVEKN  104 (105)
T ss_dssp             -EEEEEEES-CCHHHHHHHHHHH
T ss_pred             -EEEEEEeC-cCHHHHHHHHHhc
Confidence             66677888 5899999999864

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.90  E-value=2.7e-24  Score=185.01  Aligned_cols=154  Identities=24%  Similarity=0.487  Sum_probs=111.6

Q ss_pred             CCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccC----CCCeEEEEEeCccchhHHHHcCCCCC
Q 026412           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTL----EDDVVVANLDADKYKDLAEKYGVSGF   97 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~----~~~v~~~~vd~~~~~~l~~~~~i~~~   97 (239)
                      .+.+..+++++|++.+.++++++|.||||||+||+++.|.|+++++.+..    .+++.++.|||+.+.++|++|+|+++
T Consensus         4 ~~~v~~l~~~~f~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~   83 (382)
T 2r2j_A            4 GSEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKY   83 (382)
T ss_dssp             ----CBCCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHHHHHTTCCEE
T ss_pred             CCceEECCHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHHHHHhcCCCcC
Confidence            35688999999999988889999999999999999999999999999853    34699999999999999999999999


Q ss_pred             CeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhCCCCCCCCCcccccchhhhhhHHHHHHHhccchhHHHHHHHHHhhh
Q 026412           98 PTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGV  176 (239)
Q Consensus        98 Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  176 (239)
                      ||+++|++|......|.|.++.+.+.+|+.+.+++......+...... +..-+.+++.|+........+.+.+++...
T Consensus        84 Pt~~~f~~G~~~~~~~~G~~~~~~l~~~i~~~~~~~v~~l~~~~~l~~-l~~~~~~~v~ff~~~~~~~~~~f~~~A~~~  161 (382)
T 2r2j_A           84 PTLKLFRNGMMMKREYRGQRSVKALADYIRQQKSDPIQEIRDLAEITT-LDRSKRNIIGYFEQKDSDNYRVFERVANIL  161 (382)
T ss_dssp             SEEEEEETTEEEEEECCSCCSHHHHHHHHHHHHSCCCEEC-------------CCEEEEEESCSSSHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCcEeeeeecCcchHHHHHHHHHHhccCCceecCCHHHHHH-hcCCCCEEEEEECCCCChhHHHHHHHHHHh
Confidence            999999887433336999999999999999999876543322222112 222223345565544444444555555443

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.90  E-value=4e-23  Score=158.17  Aligned_cols=117  Identities=16%  Similarity=0.248  Sum_probs=99.8

Q ss_pred             hcCCCcEEcChhhHHHHhcC--CCcEEEEEEC-------CCChHHhhHhHHHHHHHHHccCC---CCeEEEEEeCccchh
Q 026412           20 ALADDVVVLTEDNFEKEVGQ--DRGALVEFYA-------PWCGHCKNLAPTYEKVAAAFTLE---DDVVVANLDADKYKD   87 (239)
Q Consensus        20 ~~~~~v~~l~~~~f~~~~~~--~k~vlV~F~a-------~wC~~C~~~~~~~~~~a~~~~~~---~~v~~~~vd~~~~~~   87 (239)
                      +....++.+++++|++.+.+  +.+++|.|||       +||++|+.+.|.|+++++.+..+   +++.|++||++++++
T Consensus        15 ~~~~~vi~lt~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~   94 (178)
T 3ga4_A           15 KDDTGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQ   94 (178)
T ss_dssp             CCTTSEEECCTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHH
T ss_pred             hccCCCEECCHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHH
Confidence            33678999999999998843  5679999999       49999999999999999988521   579999999999999


Q ss_pred             HHHHcCCCCCCeEEEEeCCCcCc-----------ccc---CC-CCCHHHHHHHHHHhhCCCCCC
Q 026412           88 LAEKYGVSGFPTLKFFPKGNKDG-----------EEY---GG-GRDLEDFVSFINEKCGTSRDG  136 (239)
Q Consensus        88 l~~~~~i~~~Pt~~~~~~g~~~~-----------~~~---~g-~~~~~~l~~~l~~~~~~~~~~  136 (239)
                      ++++|+|+++||+++|++|+...           ..|   .| +++++.|.+||.+.++.....
T Consensus        95 la~~~~I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t~~~i~I  158 (178)
T 3ga4_A           95 LVKDLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKILNISITV  158 (178)
T ss_dssp             HHHHTTCCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHHTCCCCC
T ss_pred             HHHHcCCCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhcCCCccc
Confidence            99999999999999999986443           344   35 899999999999999865543

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.90  E-value=7.7e-23  Score=145.12  Aligned_cols=106  Identities=18%  Similarity=0.414  Sum_probs=97.4

Q ss_pred             CCcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE
Q 026412           23 DDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  101 (239)
Q Consensus        23 ~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  101 (239)
                      ..+..++.++|++.+ .++++++|.||++||++|+.+.|.++++++.++  +++.++.||++.+++++++|+|.++||++
T Consensus         4 ~~v~~l~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~--~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~   81 (111)
T 3gnj_A            4 MSLEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYE--ESFGFYYVDVEEEKTLFQRFSLKGVPQIL   81 (111)
T ss_dssp             CCSEECCHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTT--TTSEEEEEETTTCHHHHHHTTCCSSCEEE
T ss_pred             CcceecCHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcC--CceEEEEEECCcChhHHHhcCCCcCCEEE
Confidence            467899999999999 889999999999999999999999999999986  36999999999999999999999999999


Q ss_pred             EEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412          102 FFPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus       102 ~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      +|++| +...++.|..+.+++.+||++.++
T Consensus        82 ~~~~g-~~~~~~~g~~~~~~l~~~l~~~l~  110 (111)
T 3gnj_A           82 YFKDG-EYKGKMAGDVEDDEVEQMIADVLE  110 (111)
T ss_dssp             EEETT-EEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             EEECC-EEEEEEeccCCHHHHHHHHHHHhc
Confidence            99776 666788999999999999998764

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.89  E-value=9.1e-23  Score=144.65  Aligned_cols=106  Identities=39%  Similarity=0.785  Sum_probs=96.2

Q ss_pred             CCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCC-CCeEEEEEeCccchhHHHHcCCCCCCeE
Q 026412           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFPTL  100 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~-~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  100 (239)
                      ++.+..+++++|++.+. +++++|.||++||++|+.+.|.+.++++.+... .++.++.||++.+++++++|+|.++||+
T Consensus         4 ~~~v~~l~~~~~~~~~~-~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~   82 (111)
T 3uvt_A            4 GSTVLALTENNFDDTIA-EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTL   82 (111)
T ss_dssp             -CCSEECCTTTHHHHHH-SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CCcceEcChhhHHHHhc-CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCcccEE
Confidence            46789999999999997 789999999999999999999999999987544 5799999999999999999999999999


Q ss_pred             EEEeCCCcCccccCCCCCHHHHHHHHHHh
Q 026412          101 KFFPKGNKDGEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus       101 ~~~~~g~~~~~~~~g~~~~~~l~~~l~~~  129 (239)
                      ++|++| +...++.|..+.+++.+||+++
T Consensus        83 ~~~~~g-~~~~~~~g~~~~~~l~~~l~~~  110 (111)
T 3uvt_A           83 LLFRGG-KKVSEHSGGRDLDSLHRFVLSQ  110 (111)
T ss_dssp             EEEETT-EEEEEECSCCSHHHHHHHHHHH
T ss_pred             EEEeCC-cEEEeccCCcCHHHHHHHHHhc
Confidence            999777 6677899999999999999875

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.89  E-value=4.7e-23  Score=150.70  Aligned_cols=106  Identities=15%  Similarity=0.228  Sum_probs=95.3

Q ss_pred             CCCcEEcChhhHHHHhcCCC-cEEEEEECCCC--hHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCC
Q 026412           22 ADDVVVLTEDNFEKEVGQDR-GALVEFYAPWC--GHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP   98 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~k-~vlV~F~a~wC--~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P   98 (239)
                      ..++..+++++|++.+.+++ +++|.|||+||  ++|+.+.|.+++++++|.  +++.+++||+|++++++.+|+|+++|
T Consensus        14 ~~g~~~vt~~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~--~~v~~~KVdvDe~~~la~~ygV~siP   91 (137)
T 2qsi_A           14 PNAPTLVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFP--GRLVAAEVAAEAERGLMARFGVAVCP   91 (137)
T ss_dssp             ---CEEECTTTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTST--TTEEEEEECGGGHHHHHHHHTCCSSS
T ss_pred             hcCCcccCHhHHHHHHhcCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHcc--CCcEEEEEECCCCHHHHHHcCCccCC
Confidence            45678999999999995554 99999999999  999999999999999985  57999999999999999999999999


Q ss_pred             eEEEEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412           99 TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus        99 t~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      |+++|++| +...+..|..+.+++.++|++.+
T Consensus        92 TlilFkdG-~~v~~~vG~~~k~~l~~~l~~~l  122 (137)
T 2qsi_A           92 SLAVVQPE-RTLGVIAKIQDWSSYLAQIGAML  122 (137)
T ss_dssp             EEEEEECC-EEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEEEECC-EEEEEEeCCCCHHHHHHHHHHHh
Confidence            99999988 67788899999999999998765

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.89  E-value=1.1e-22  Score=145.06  Aligned_cols=108  Identities=29%  Similarity=0.527  Sum_probs=98.0

Q ss_pred             CcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEE
Q 026412           24 DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF  103 (239)
Q Consensus        24 ~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~  103 (239)
                      .+..++.++|++.+ ++++++|.||++||++|+.+.|.+.++++.++  +++.++.||++++++++++|+|.++||+++|
T Consensus         2 ~v~~l~~~~~~~~~-~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~--~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~   78 (112)
T 2voc_A            2 AIVKATDQSFSAET-SEGVVLADFWAPWCGPSKMIAPVLEELDQEMG--DKLKIVKIDVDENQETAGKYGVMSIPTLLVL   78 (112)
T ss_dssp             CCEECCTTTHHHHH-SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHT--TTCEEEEEETTTCCSHHHHTTCCSBSEEEEE
T ss_pred             CeEEecHHHHHHHh-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEECCCCHHHHHHcCCCcccEEEEE
Confidence            36789999999999 88999999999999999999999999999986  3699999999999999999999999999999


Q ss_pred             eCCCcCccccCCCCCHHHHHHHHHHhhCCCCC
Q 026412          104 PKGNKDGEEYGGGRDLEDFVSFINEKCGTSRD  135 (239)
Q Consensus       104 ~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~  135 (239)
                      ++| +...++.|..+.+++.+|+++.++++..
T Consensus        79 ~~G-~~~~~~~G~~~~~~l~~~l~~~~~~~~~  109 (112)
T 2voc_A           79 KDG-EVVETSVGFKPKEALQELVNKHLLEHHH  109 (112)
T ss_dssp             ETT-EEEEEEESCCCHHHHHHHHHTTSCSCCC
T ss_pred             eCC-EEEEEEeCCCCHHHHHHHHHHHHHhhcc
Confidence            665 6677899999999999999998876543

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.89  E-value=2.3e-22  Score=148.81  Aligned_cols=113  Identities=40%  Similarity=0.749  Sum_probs=101.6

Q ss_pred             CCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCC-CCeEEEEEeCccchhHHHHcCCCCCCeE
Q 026412           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFPTL  100 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~-~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  100 (239)
                      ...+..++.++|++.+.++++++|+||++||++|+.+.|.|.++++.+... .++.++.||++++.+++++|+|.++||+
T Consensus        16 ~~~v~~l~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~   95 (140)
T 2dj1_A           16 ENGVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTI   95 (140)
T ss_dssp             ETTEEECCTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTCCSSSEE
T ss_pred             CCCCEEcChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCCCccCeE
Confidence            356889999999999988999999999999999999999999999988643 3599999999999999999999999999


Q ss_pred             EEEeCCCcCccccCCCCCHHHHHHHHHHhhCCCCCC
Q 026412          101 KFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDG  136 (239)
Q Consensus       101 ~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~  136 (239)
                      ++|++| + ...|.|.++.+.|.+||++.+++....
T Consensus        96 ~~~~~G-~-~~~~~g~~~~~~l~~~l~~~~~~~~~~  129 (140)
T 2dj1_A           96 KILKKG-Q-AVDYDGSRTQEEIVAKVREVSQPDWTP  129 (140)
T ss_dssp             EEEETT-E-EEECCSCCCHHHHHHHHHHHHSSSCCC
T ss_pred             EEEECC-c-EEEcCCCCCHHHHHHHHHHhcCCCCCC
Confidence            999776 4 778999999999999999998866543

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.89  E-value=1.5e-22  Score=147.91  Aligned_cols=108  Identities=46%  Similarity=0.804  Sum_probs=98.4

Q ss_pred             CCCcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeE
Q 026412           22 ADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL  100 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  100 (239)
                      ...+..++.++|++.+ .++++++|.||++||++|+.+.|.++++++.+.  +.+.++.||++.+++++++|+|.++||+
T Consensus        16 ~~~v~~l~~~~f~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~--~~~~~~~vd~~~~~~l~~~~~v~~~Pt~   93 (130)
T 2dml_A           16 SDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALK--DVVKVGAVNADKHQSLGGQYGVQGFPTI   93 (130)
T ss_dssp             TSSSEECCTTTHHHHTTTCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTT--TTSEEEEEETTTCHHHHHHHTCCSSSEE
T ss_pred             CCCcEECCHHHHHHHHhcCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhc--CceEEEEEeCCCCHHHHHHcCCCccCEE
Confidence            4568999999999976 778999999999999999999999999999986  3599999999999999999999999999


Q ss_pred             EEEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412          101 KFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus       101 ~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      ++|++|+.....+.|.++.+++.+|+.+.+.
T Consensus        94 ~~~~~~~~~~~~~~G~~~~~~l~~~l~~~l~  124 (130)
T 2dml_A           94 KIFGANKNKPEDYQGGRTGEAIVDAALSALR  124 (130)
T ss_dssp             EEESSCTTSCEECCSCCSHHHHHHHHHHHHH
T ss_pred             EEEeCCCCeEEEeecCCCHHHHHHHHHHHHh
Confidence            9999886657889999999999999988764

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.89  E-value=2.2e-22  Score=142.13  Aligned_cols=105  Identities=33%  Similarity=0.696  Sum_probs=95.1

Q ss_pred             CCcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE
Q 026412           23 DDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  101 (239)
Q Consensus        23 ~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  101 (239)
                      ..+..++.++|++.+ .++++++|.||++||++|+.+.|.++++++.++  +++.++.||++.+++++++|++.++||++
T Consensus         2 ~~v~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~   79 (108)
T 2trx_A            2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNPGTAPKYGIRGIPTLL   79 (108)
T ss_dssp             TTEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTEEEEEEETTTCTTHHHHTTCCSSSEEE
T ss_pred             CcceecchhhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhC--CCcEEEEEECCCCHHHHHHcCCcccCEEE
Confidence            467889999999776 778999999999999999999999999999986  36999999999999999999999999999


Q ss_pred             EEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412          102 FFPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus       102 ~~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      +|++| +...++.|..+.+++.+||++.+
T Consensus        80 ~~~~G-~~~~~~~G~~~~~~l~~~l~~~l  107 (108)
T 2trx_A           80 LFKNG-EVAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             EEETT-EEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEeCC-EEEEEEecCCCHHHHHHHHHHhh
Confidence            99765 66678899999999999998865

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.89  E-value=4.3e-23  Score=151.46  Aligned_cols=105  Identities=13%  Similarity=0.194  Sum_probs=97.9

Q ss_pred             CcEEcChhhHHHHhcCCCcEEEEEECCC--ChHHhhHhHHHHHHHHHccCCCC-eEEEEEeCccchhHHHHcCCCCCCeE
Q 026412           24 DVVVLTEDNFEKEVGQDRGALVEFYAPW--CGHCKNLAPTYEKVAAAFTLEDD-VVVANLDADKYKDLAEKYGVSGFPTL  100 (239)
Q Consensus        24 ~v~~l~~~~f~~~~~~~k~vlV~F~a~w--C~~C~~~~~~~~~~a~~~~~~~~-v~~~~vd~~~~~~l~~~~~i~~~Pt~  100 (239)
                      ++..+++++|++.+.++++++|.||++|  |++|+.+.|.+++++++|.  +. +.|++||+|++++++.+|+|+++||+
T Consensus        18 g~~~~t~~~F~~~v~~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~--g~~v~~~KVdvDe~~~lA~~ygV~sIPTl   95 (140)
T 2qgv_A           18 GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFP--DYTWQVAIADLEQSEAIGDRFGAFRFPAT   95 (140)
T ss_dssp             TCEECCHHHHHHHHHTCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCT--TSCCEEEECCHHHHHHHHHHHTCCSSSEE
T ss_pred             CCccCCHHHHHHHHhCCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcC--CCeEEEEEEECCCCHHHHHHcCCccCCEE
Confidence            7889999999999988889999999999  9999999999999999986  46 99999999999999999999999999


Q ss_pred             EEEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412          101 KFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus       101 ~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      ++|++| +...+..|..+.+++.++|++.+.
T Consensus        96 ilFk~G-~~v~~~~G~~~k~~l~~~i~~~l~  125 (140)
T 2qgv_A           96 LVFTGG-NYRGVLNGIHPWAELINLMRGLVE  125 (140)
T ss_dssp             EEEETT-EEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEECC-EEEEEEecCCCHHHHHHHHHHHhc
Confidence            999988 677888999999999999998774

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=99.89  E-value=1.7e-23  Score=179.13  Aligned_cols=152  Identities=13%  Similarity=0.134  Sum_probs=116.5

Q ss_pred             CCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHh------HHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCC
Q 026412           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLA------PTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS   95 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~------~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~   95 (239)
                      .+.+..++.++|++.+.++++++|.||||||+||+...      |.|+++++.+.. .++.+++|||+.++++|++|+|+
T Consensus        12 ~~~v~~lt~~~f~~~i~~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~-~~v~~~~Vd~~~~~~l~~~~~V~   90 (367)
T 3us3_A           12 VDRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLED-KGVGFGLVDSEKDAAVAKKLGLT   90 (367)
T ss_dssp             CCCCEECCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTT-TTEEEEEEETTTTHHHHHHHTCC
T ss_pred             CCccEECCHHHHHHHHhhCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhc-CCceEEEEeCcccHHHHHHcCCC
Confidence            45799999999999998889999999999999974333      789999998863 36999999999999999999999


Q ss_pred             CCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhCCCCCCCCCcccccchhh-hhhHHHHHHHhccchhHHHHHHHHHh
Q 026412           96 GFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVA-SLDALVKEFVAASGDEKKAVFSKIER  174 (239)
Q Consensus        96 ~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~  174 (239)
                      ++||+++|++| . +..|.|.++.+.+.+|+.+++++..............+. +-+..++.|+...+......+.+++.
T Consensus        91 ~~PTl~~f~~G-~-~~~y~G~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~vv~ff~~~~~~~~~~f~~~A~  168 (367)
T 3us3_A           91 EEDSIYVFKED-E-VIEYDGEFSADTLVEFLLDVLEDPVELIEGERELQAFENIEDEIKLIGYFKNKDSEHYKAFKEAAE  168 (367)
T ss_dssp             STTEEEEEETT-E-EEECCSCCSHHHHHHHHHHHHSCSEEECCSHHHHHHHHHCCSSCEEEEECSCTTCHHHHHHHHHHH
T ss_pred             cCceEEEEECC-c-EEEeCCCCCHHHHHHHHHHhcCCCcEEcCCHHHHHHHhccCCCcEEEEEECCCCchHHHHHHHHHH
Confidence            99999999987 3 468999999999999999999876554433222222232 22234445555544455555666655


Q ss_pred             hh
Q 026412          175 GV  176 (239)
Q Consensus       175 ~~  176 (239)
                      ..
T Consensus       169 ~~  170 (367)
T 3us3_A          169 EF  170 (367)
T ss_dssp             HH
T ss_pred             hh
Confidence            44

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.89  E-value=1.8e-22  Score=142.49  Aligned_cols=106  Identities=31%  Similarity=0.578  Sum_probs=97.1

Q ss_pred             CCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE
Q 026412           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  101 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  101 (239)
                      .+.+..+++++|++.+.++++++|.||++||++|+.+.|.+.++++.++  +++.++.||++.+++++++|+|.++||++
T Consensus         3 ~~~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~   80 (109)
T 3tco_A            3 EDVTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYK--GKAVFGRLNVDENQKIADKYSVLNIPTTL   80 (109)
T ss_dssp             CCCCEECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTSEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CCeEEEecHHHHHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhC--CCceEEEEccccCHHHHHhcCcccCCEEE
Confidence            3567899999999999889999999999999999999999999999986  36999999999999999999999999999


Q ss_pred             EEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412          102 FFPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus       102 ~~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      +|.+| +...++.|..+.+++.++|++.+
T Consensus        81 ~~~~g-~~~~~~~g~~~~~~l~~~l~~~l  108 (109)
T 3tco_A           81 IFVNG-QLVDSLVGAVDEDTLESTVNKYL  108 (109)
T ss_dssp             EEETT-EEEEEEESCCCHHHHHHHHHHHC
T ss_pred             EEcCC-cEEEeeeccCCHHHHHHHHHHHh
Confidence            99666 66778999999999999998764

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.89  E-value=2.9e-23  Score=172.85  Aligned_cols=118  Identities=37%  Similarity=0.639  Sum_probs=103.2

Q ss_pred             hcCCCcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc--cchhHHHHcCCCC
Q 026412           20 ALADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD--KYKDLAEKYGVSG   96 (239)
Q Consensus        20 ~~~~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~~   96 (239)
                      +....+.+++.++|++.+ ..+++++|.|||+||++|+.+.|.|+++++.+.  +.+.++.|||+  .++++|++|+|.+
T Consensus        14 ~~~~~vv~lt~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~--~~~~~~~v~~d~~~~~~l~~~~~I~~   91 (298)
T 3ed3_A           14 DSDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLD--GVVQVAAVNCDLNKNKALCAKYDVNG   91 (298)
T ss_dssp             SSCTTCEECCHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTSEEEEEETTSTTTHHHHHHTTCCB
T ss_pred             CCCCCeEEeCHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHcc--CCcEEEEEEccCccCHHHHHhCCCCc
Confidence            346789999999999999 678899999999999999999999999999986  34888999888  6899999999999


Q ss_pred             CCeEEEEeCCC----------------cCccccCCCCCHHHHHHHHHHhhCCCCCCCCC
Q 026412           97 FPTLKFFPKGN----------------KDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQ  139 (239)
Q Consensus        97 ~Pt~~~~~~g~----------------~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~  139 (239)
                      +||+++|++|+                ..+..|.|.++.+.+.+|+.+.+++.......
T Consensus        92 ~Pt~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~~~~v~~i~~  150 (298)
T 3ed3_A           92 FPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIRSYVKKFVR  150 (298)
T ss_dssp             SSEEEEEECCCC-------------CCCEEEECCSCCSHHHHHHHHHTTCCCCEEECSC
T ss_pred             cceEEEEECCceeecccccccccccccccceeecCCcCHHHHHHHHHHhcccccEEcCC
Confidence            99999999884                13678999999999999999998776554433

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.89  E-value=1.8e-22  Score=147.88  Aligned_cols=111  Identities=42%  Similarity=0.777  Sum_probs=99.6

Q ss_pred             cCCCcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccC--CCCeEEEEEeCccchhHHHHcCCCCC
Q 026412           21 LADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTL--EDDVVVANLDADKYKDLAEKYGVSGF   97 (239)
Q Consensus        21 ~~~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~--~~~v~~~~vd~~~~~~l~~~~~i~~~   97 (239)
                      ....+..+++++|++.+ .++++++|.||++||++|+.+.|.+.++++.+..  .+++.++.||++.+++++++|+|.++
T Consensus         5 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~   84 (133)
T 1x5d_A            5 SSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGF   84 (133)
T ss_dssp             SCCSCEECCTTHHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCHHHHHHTCCSS
T ss_pred             CCCcCEEcCHhhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHHHHHhCCCCee
Confidence            35678999999999987 7789999999999999999999999999998851  24699999999999999999999999


Q ss_pred             CeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhCC
Q 026412           98 PTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGT  132 (239)
Q Consensus        98 Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~  132 (239)
                      ||+++|++| +...++.|.++.+++.+|+.+.++.
T Consensus        85 Pt~~~~~~g-~~~~~~~G~~~~~~l~~~l~~~~~~  118 (133)
T 1x5d_A           85 PTIKIFQKG-ESPVDYDGGRTRSDIVSRALDLFSD  118 (133)
T ss_dssp             SEEEEEETT-EEEEEECSCCSHHHHHHHHHHHHHH
T ss_pred             CeEEEEeCC-CceEEecCCCCHHHHHHHHHHHhhc
Confidence            999999986 5678899999999999999988753

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.89  E-value=8.4e-23  Score=146.63  Aligned_cols=112  Identities=44%  Similarity=0.907  Sum_probs=99.8

Q ss_pred             CCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCC-CCeEEEEEeCccchhHHHHcCCCCCCeE
Q 026412           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFPTL  100 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~-~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  100 (239)
                      .+.+..++.++|++.+.++++++|.||++||++|+.+.|.+.++++.+... .++.++.+|++++++++++|+|.++||+
T Consensus         6 ~~~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~   85 (120)
T 1mek_A            6 EDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTI   85 (120)
T ss_dssp             ETTEEECCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSEE
T ss_pred             CCCcEEechhhHHHHHccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCCCcccEE
Confidence            456889999999999988899999999999999999999999999998643 4699999999999999999999999999


Q ss_pred             EEEeCCCcC-ccccCCCCCHHHHHHHHHHhhCCC
Q 026412          101 KFFPKGNKD-GEEYGGGRDLEDFVSFINEKCGTS  133 (239)
Q Consensus       101 ~~~~~g~~~-~~~~~g~~~~~~l~~~l~~~~~~~  133 (239)
                      ++|++|... +..+.|.++.+.+.+|+++.++++
T Consensus        86 ~~~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~~  119 (120)
T 1mek_A           86 KFFRNGDTASPKEYTAGREADDIVNWLKKRTGPA  119 (120)
T ss_dssp             EEEESSCSSSCEECCCCSSHHHHHHHHHTTSCCC
T ss_pred             EEEeCCCcCCcccccCccCHHHHHHHHHhccCCC
Confidence            999877432 378899999999999999887654

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.88  E-value=5.6e-23  Score=152.70  Aligned_cols=109  Identities=14%  Similarity=0.209  Sum_probs=92.2

Q ss_pred             cEEcC-hhhHHHHh--cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE
Q 026412           25 VVVLT-EDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  101 (239)
Q Consensus        25 v~~l~-~~~f~~~~--~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  101 (239)
                      +..++ ..+|++.+  .++++++|.|||+||+||+.+.|.++++++++.  +.+.|++||+|++++++.+|+|.+.||++
T Consensus        23 v~~l~t~~~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~--~~v~f~kVDVDe~~e~a~~y~V~siPT~~  100 (160)
T 2av4_A           23 LQHLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIK--NFCVIYLVDITEVPDFNTMYELYDPVSVM  100 (160)
T ss_dssp             CEECCSHHHHHHHHHHCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHT--TTEEEEEEETTTCCTTTTTTTCCSSEEEE
T ss_pred             hhccCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcc--CCcEEEEEECCCCHHHHHHcCCCCCCEEE
Confidence            44444 58999887  478999999999999999999999999999985  45999999999999999999999999999


Q ss_pred             EEeCCCcCc-c-------ccCCCCC-HHHHHHHHHHhhCCCCC
Q 026412          102 FFPKGNKDG-E-------EYGGGRD-LEDFVSFINEKCGTSRD  135 (239)
Q Consensus       102 ~~~~g~~~~-~-------~~~g~~~-~~~l~~~l~~~~~~~~~  135 (239)
                      +|.+|.... .       +..|..+ .++|.++|+.....++.
T Consensus       101 fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r~a~~  143 (160)
T 2av4_A          101 FFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRGARK  143 (160)
T ss_dssp             EEETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHHHHHT
T ss_pred             EEECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHHHhhc
Confidence            999884321 3       6788876 99999999887654443

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.88  E-value=1.7e-22  Score=145.14  Aligned_cols=103  Identities=27%  Similarity=0.586  Sum_probs=92.9

Q ss_pred             CCCcEEcChhhHHHHhc--CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCe
Q 026412           22 ADDVVVLTEDNFEKEVG--QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT   99 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~--~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt   99 (239)
                      .......+.++|++.+.  ++++++|.||++||++|+.+.|.++++++.++   ++.++.||++++++++++|+|.++||
T Consensus        11 ~~~~~~~t~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~d~~~~l~~~~~v~~~Pt   87 (116)
T 3qfa_C           11 GSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASECEVKSMPT   87 (116)
T ss_dssp             -CCBCCCCHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCT---TSEEEEEETTTTHHHHHHTTCCSSSE
T ss_pred             CcccCCCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC---CCEEEEEECCCCHHHHHHcCCccccE
Confidence            45667788999999996  89999999999999999999999999999885   49999999999999999999999999


Q ss_pred             EEEEeCCCcCccccCCCCCHHHHHHHHHHh
Q 026412          100 LKFFPKGNKDGEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus       100 ~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~  129 (239)
                      +++|++| +...++.|. +.+.+.++|++.
T Consensus        88 ~~~~~~G-~~~~~~~G~-~~~~l~~~l~~~  115 (116)
T 3qfa_C           88 FQFFKKG-QKVGEFSGA-NKEKLEATINEL  115 (116)
T ss_dssp             EEEESSS-SEEEEEESC-CHHHHHHHHHHH
T ss_pred             EEEEeCC-eEEEEEcCC-CHHHHHHHHHHh
Confidence            9999665 667778898 999999999875

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.88  E-value=2.4e-22  Score=141.20  Aligned_cols=103  Identities=31%  Similarity=0.619  Sum_probs=93.2

Q ss_pred             cEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEe
Q 026412           25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFP  104 (239)
Q Consensus        25 v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~  104 (239)
                      +..+++++|++.+.++++++|.||++||++|+.+.|.++++++.++  +++.++.+|++++++++++|+|.++||+++|+
T Consensus         2 v~~l~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~--~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~   79 (105)
T 1nsw_A            2 TMTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHA--DKVTVAKLNVDENPETTSQFGIMSIPTLILFK   79 (105)
T ss_dssp             CEEECTTTHHHHHSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHST--TTCEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred             ceeccHHhHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhc--CCcEEEEEECcCCHHHHHHcCCccccEEEEEe
Confidence            6789999999888888999999999999999999999999999986  35999999999999999999999999999996


Q ss_pred             CCCcCccccCCCCCHHHHHHHHHHhh
Q 026412          105 KGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus       105 ~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      +| +...++.|..+.+.+.+++++.+
T Consensus        80 ~G-~~~~~~~G~~~~~~l~~~l~~~l  104 (105)
T 1nsw_A           80 GG-RPVKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             TT-EEEEEEESCCCHHHHHHHTTTTT
T ss_pred             CC-eEEEEEecCCCHHHHHHHHHHHh
Confidence            65 66678899999999999987654

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.88  E-value=2.3e-23  Score=184.24  Aligned_cols=151  Identities=35%  Similarity=0.592  Sum_probs=120.2

Q ss_pred             CCcEEcChhhHHHHhcCC---CcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCe
Q 026412           23 DDVVVLTEDNFEKEVGQD---RGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT   99 (239)
Q Consensus        23 ~~v~~l~~~~f~~~~~~~---k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt   99 (239)
                      +.+..+++++|++.+.++   ++++|.||||||+||+++.|.|+++++.+..  .+.++.|||+.++++|++|+|+++||
T Consensus         1 s~v~~l~~~~f~~~i~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt   78 (481)
T 3f8u_A            1 SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKG--IVPLAKVDCTANTNTCNKYGVSGYPT   78 (481)
T ss_dssp             CCCEEECTTTHHHHTTCCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TCCEEEEETTTCHHHHHHTTCCEESE
T ss_pred             CceEEecHHHHHHHHHhCCCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcC--ceEEEEEECCCCHHHHHhcCCCCCCE
Confidence            357899999999999666   9999999999999999999999999999863  49999999999999999999999999


Q ss_pred             EEEEeCCCcCccccCCCCCHHHHHHHHHHhhCCCCCCCCCcccccchhhhhhHHHHHHHhccchhHHHHHHHHHhhh
Q 026412          100 LKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVASLDALVKEFVAASGDEKKAVFSKIERGV  176 (239)
Q Consensus       100 ~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  176 (239)
                      +++|++| +.+.+|.|.++.+.+.+|+.+.+++..............+..-+..+..|+.+.++.....+.+++...
T Consensus        79 l~~~~~g-~~~~~~~G~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~f~~~a~~~  154 (481)
T 3f8u_A           79 LKIFRDG-EEAGAYDGPRTADGIVSHLKKQAGPASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNL  154 (481)
T ss_dssp             EEEEETT-EEEEECCSCSSHHHHHHHHHHHTSCSEEEECSHHHHHHHTTSSSCEEEEEESCTTCHHHHHHHHHHHHH
T ss_pred             EEEEeCC-ceeeeecCccCHHHHHHHHHhhcccCceecCCHHHHHHHHhcCCcEEEEEECCCccchHHHHHHHHHHh
Confidence            9999887 567899999999999999999998765544333332333333333444566555555555666665544

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.88  E-value=8e-23  Score=181.78  Aligned_cols=114  Identities=33%  Similarity=0.673  Sum_probs=103.6

Q ss_pred             CCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE
Q 026412           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  101 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  101 (239)
                      .+.+..+++++|++.+.++++++|.||||||+||+.+.|.|+++++.+... ++.++.|||+.++++|++|+|+++||++
T Consensus        13 ~~~v~~l~~~~f~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~   91 (504)
T 2b5e_A           13 DSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEK-NITLAQIDCTENQDLCMEHNIPGFPSLK   91 (504)
T ss_dssp             TSSCEECCTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-TCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CCCcEECCHHHHHHHHhcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccC-CeEEEEEECCCCHHHHHhcCCCcCCEEE
Confidence            467899999999999988999999999999999999999999999998743 5999999999999999999999999999


Q ss_pred             EEeCCCcC-ccccCCCCCHHHHHHHHHHhhCCCCCC
Q 026412          102 FFPKGNKD-GEEYGGGRDLEDFVSFINEKCGTSRDG  136 (239)
Q Consensus       102 ~~~~g~~~-~~~~~g~~~~~~l~~~l~~~~~~~~~~  136 (239)
                      +|++|... +..|.|.++.+.+.+|+.+.+++....
T Consensus        92 ~~~~g~~~~~~~~~G~~~~~~l~~~l~~~~~~~v~~  127 (504)
T 2b5e_A           92 IFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVAV  127 (504)
T ss_dssp             EEETTCTTCEEECCSCCSHHHHHHHHHHHTSCSEEE
T ss_pred             EEeCCccccceeecCCCCHHHHHHHHHHhcCCccee
Confidence            99987432 789999999999999999999876443

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.88  E-value=7.9e-22  Score=145.51  Aligned_cols=114  Identities=29%  Similarity=0.551  Sum_probs=99.7

Q ss_pred             CCCcEEcChhhHHHHhc------------CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHH
Q 026412           22 ADDVVVLTEDNFEKEVG------------QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLA   89 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~------------~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~   89 (239)
                      ...+..+++++|.+.+.            ++++++|.||++||++|+.+.|.+.++++.+.  +++.++.||++.+++++
T Consensus         8 ~~~v~~l~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~--~~v~~~~vd~~~~~~l~   85 (136)
T 2l5l_A            8 NGKVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYD--GQIVIYKVDTEKEQELA   85 (136)
T ss_dssp             TTSEEEECHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTT--TTCEEEEEETTTCHHHH
T ss_pred             CCceEEecchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhc--CCEEEEEEeCCCCHHHH
Confidence            45688999999999884            46899999999999999999999999999986  35999999999999999


Q ss_pred             HHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhCCCCCCCC
Q 026412           90 EKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKG  138 (239)
Q Consensus        90 ~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~  138 (239)
                      ++|+|.++||+++|+.+|+.. .+.|..+.+.+.+||++.++..+...+
T Consensus        86 ~~~~v~~~Pt~~~~~~~G~~~-~~~G~~~~~~l~~~l~~~~~~~~~~~~  133 (136)
T 2l5l_A           86 GAFGIRSIPSILFIPMEGKPE-MAQGAMPKASFKKAIDEFLLKKEGHHH  133 (136)
T ss_dssp             HHTTCCSSCEEEEECSSSCCE-EEESCCCHHHHHHHHHHHHTSCTTSSC
T ss_pred             HHcCCCCCCEEEEECCCCcEE-EEeCCCCHHHHHHHHHHHhhccCCCCC
Confidence            999999999999995544544 788999999999999999887665443

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.88  E-value=7.1e-23  Score=150.23  Aligned_cols=114  Identities=37%  Similarity=0.759  Sum_probs=100.2

Q ss_pred             CCCcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeE
Q 026412           22 ADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL  100 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  100 (239)
                      ...+..++.++|+..+ .++++++|.||++||++|+.+.|.|+++++.+...+++.++.||++.+..++++|+|.++||+
T Consensus         6 ~~~v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   85 (133)
T 2dj3_A            6 SGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTI   85 (133)
T ss_dssp             SCSSEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCCCSSSSEE
T ss_pred             CCceEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcCCCcCCEE
Confidence            5678999999999988 458999999999999999999999999999987556799999999999999999999999999


Q ss_pred             EEEeCCCcC-ccccC-CCCCHHHHHHHHHHhhCCCCC
Q 026412          101 KFFPKGNKD-GEEYG-GGRDLEDFVSFINEKCGTSRD  135 (239)
Q Consensus       101 ~~~~~g~~~-~~~~~-g~~~~~~l~~~l~~~~~~~~~  135 (239)
                      ++|++|+.. ...|. |.++.+++.+||++.++....
T Consensus        86 ~~~~~g~~~~~~~~~gg~~~~~~l~~~l~~~~~~~~~  122 (133)
T 2dj3_A           86 YFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKRSR  122 (133)
T ss_dssp             EEECTTCTTSCEECCSSCCSTTHHHHHHHHHSSSCSS
T ss_pred             EEEeCCCcccceEecCCCcCHHHHHHHHHHhcccccC
Confidence            999887643 34677 569999999999999876543

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.88  E-value=4e-22  Score=140.13  Aligned_cols=103  Identities=30%  Similarity=0.542  Sum_probs=94.7

Q ss_pred             CCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEE
Q 026412           23 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF  102 (239)
Q Consensus        23 ~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~  102 (239)
                      ..+..+++++|++.+ ++++++|.||++||++|+.+.|.+.++++.++  +++.++.||++.+++++++|+|.++||+++
T Consensus         3 ~~v~~l~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   79 (106)
T 3die_A            3 MAIVKVTDADFDSKV-ESGVQLVDFWATACGPCKMIAPVLEELAADYE--GKADILKLDVDENPSTAAKYEVMSIPTLIV   79 (106)
T ss_dssp             CCCEECCTTTHHHHS-CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTT--TTCEEEEEETTTCHHHHHHTTCCSBSEEEE
T ss_pred             cceEECCHHHHHHHh-cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhc--CCcEEEEEECCcCHHHHHhCCCcccCEEEE
Confidence            467889999999999 89999999999999999999999999999986  349999999999999999999999999999


Q ss_pred             EeCCCcCccccCCCCCHHHHHHHHHHh
Q 026412          103 FPKGNKDGEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus       103 ~~~g~~~~~~~~g~~~~~~l~~~l~~~  129 (239)
                      |++| +...++.|..+.+++.++|++.
T Consensus        80 ~~~G-~~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 3die_A           80 FKDG-QPVDKVVGFQPKENLAEVLDKH  105 (106)
T ss_dssp             EETT-EEEEEEESCCCHHHHHHHHHTT
T ss_pred             EeCC-eEEEEEeCCCCHHHHHHHHHHh
Confidence            9866 6677899999999999999864

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.88  E-value=4.3e-22  Score=150.34  Aligned_cols=108  Identities=28%  Similarity=0.608  Sum_probs=98.0

Q ss_pred             CCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE
Q 026412           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  101 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  101 (239)
                      ...+.++++.+|++.+.++++++|.||++||++|+.+.|.|+++++.+.  +++.++.||++++++++++|+|+++||++
T Consensus        46 ~~~~~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~--~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  123 (155)
T 2ppt_A           46 TGKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLA--GQVRLAKIDTQAHPAVAGRHRIQGIPAFI  123 (155)
T ss_dssp             CSSEEECCHHHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHT--TTCEEEEEETTTSTHHHHHTTCCSSSEEE
T ss_pred             CCCCccCCHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHcc--CCEEEEEEeCCccHHHHHHcCCCcCCEEE
Confidence            4457889999999999788999999999999999999999999999986  35999999999999999999999999999


Q ss_pred             EEeCCCcCccccCCCCCHHHHHHHHHHhhCC
Q 026412          102 FFPKGNKDGEEYGGGRDLEDFVSFINEKCGT  132 (239)
Q Consensus       102 ~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~  132 (239)
                      +|++| +...++.|..+.+++.+||++.++.
T Consensus       124 ~~~~G-~~~~~~~G~~~~~~l~~~l~~~l~~  153 (155)
T 2ppt_A          124 LFHKG-RELARAAGARPASELVGFVRGKLGA  153 (155)
T ss_dssp             EEETT-EEEEEEESCCCHHHHHHHHHHHHC-
T ss_pred             EEeCC-eEEEEecCCCCHHHHHHHHHHHhcc
Confidence            99766 6677889999999999999998764

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.88  E-value=3.2e-23  Score=176.34  Aligned_cols=151  Identities=19%  Similarity=0.162  Sum_probs=115.4

Q ss_pred             CCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHH-------HHHHHHHccCCCCeEEEEEeCccchhHHHHcCC
Q 026412           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPT-------YEKVAAAFTLEDDVVVANLDADKYKDLAEKYGV   94 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~-------~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i   94 (239)
                      .+.+..+++++|++.+.++++++|.||||||+ |+.+.|.       |+++++.+... ++.++.|||+.++++|++|+|
T Consensus        10 ~~~v~~l~~~~f~~~i~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~-~v~~~~Vd~~~~~~l~~~~~v   87 (350)
T 1sji_A           10 KDRVVSLTEKNFKQVLKKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHK-DIGFVMVDAKKEAKLAKKLGF   87 (350)
T ss_dssp             CCCCEEECHHHHHHHHTTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGS-SEEEEEEETTTTHHHHHHHTC
T ss_pred             CCccEECCHHHHHHHHhhCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhc-CcEEEEEeCCCCHHHHHhcCC
Confidence            45689999999999998899999999999999 9999999       99999988643 699999999999999999999


Q ss_pred             CCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhCCCCCCCCCcccccchhh-hhhHHHHHHHhccchhHHHHHHHHH
Q 026412           95 SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTSTAGIVA-SLDALVKEFVAASGDEKKAVFSKIE  173 (239)
Q Consensus        95 ~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~  173 (239)
                      +++||+++|++|.  +..|.|.++.+.+.+|+.+.+++......+.......+. .-+..++.|+...+......+.+++
T Consensus        88 ~~~Pt~~~~~~g~--~~~~~G~~~~~~l~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~vv~ff~~~~~~~~~~~~~~A  165 (350)
T 1sji_A           88 DEEGSLYVLKGDR--TIEFDGEFAADVLVEFLLDLIEDPVEIINSKLEVQAFERIEDQIKLIGFFKSEESEYYKAFEEAA  165 (350)
T ss_dssp             CSTTEEEEEETTE--EEEECSCCCHHHHHHHHHTTSSCSEEECCSHHHHHHHHHCCSSCEEEEECSCTTSHHHHHHHHHH
T ss_pred             CccceEEEEECCc--EEEecCCCCHHHHHHHHHHhcCCcceeccchHHHHHHhccCCCcEEEEEECCCCcHHHHHHHHHH
Confidence            9999999998873  678999999999999999998876544332222222222 1222334455543433444555554


Q ss_pred             hhh
Q 026412          174 RGV  176 (239)
Q Consensus       174 ~~~  176 (239)
                      ...
T Consensus       166 ~~~  168 (350)
T 1sji_A          166 EHF  168 (350)
T ss_dssp             HHT
T ss_pred             Hhh
Confidence            433

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.88  E-value=4.4e-21  Score=158.58  Aligned_cols=106  Identities=24%  Similarity=0.504  Sum_probs=97.1

Q ss_pred             CCCcEEcChhhHHHHhcC--CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCe
Q 026412           22 ADDVVVLTEDNFEKEVGQ--DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT   99 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~--~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt   99 (239)
                      .+.+..++.++|++++..  +++++|+||+|||+||+.+.|.|+++++.++  +++.++.||++++++++++|+|.++||
T Consensus         6 ~~~v~~~~~~~f~~~~~~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~Pt   83 (287)
T 3qou_A            6 VENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYN--GQFILAKLDCDAEQMIAAQFGLRAIPT   83 (287)
T ss_dssp             CTTEEECCTTTHHHHHTTTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHT--SSSEEEEEETTTCHHHHHTTTCCSSSE
T ss_pred             CCccEECCHHHHHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcC--CCeEEEEEeCccCHHHHHHcCCCCCCe
Confidence            457899999999998843  8999999999999999999999999999986  369999999999999999999999999


Q ss_pred             EEEEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412          100 LKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus       100 ~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      +++|++| +...++.|..+.+.+.+|+....
T Consensus        84 ~~~~~~G-~~~~~~~g~~~~~~l~~~l~~~l  113 (287)
T 3qou_A           84 VYLFQNG-QPVDGFQGPQPEEAIRALLDXVL  113 (287)
T ss_dssp             EEEEETT-EEEEEEESCCCHHHHHHHHHHHS
T ss_pred             EEEEECC-EEEEEeeCCCCHHHHHHHHHHHc
Confidence            9999766 66778999999999999999876

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.88  E-value=4.1e-22  Score=140.60  Aligned_cols=106  Identities=29%  Similarity=0.589  Sum_probs=95.3

Q ss_pred             CcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEE
Q 026412           24 DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF  103 (239)
Q Consensus        24 ~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~  103 (239)
                      .+..+++++|++++.++++++|.||++||++|+.+.|.+.++++.++  +++.++.||++.+++++++|++.++|++++|
T Consensus         2 ~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   79 (109)
T 2yzu_A            2 KPIEVTDQNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYE--GKLLVAKLDVDENPKTAMRYRVMSIPTVILF   79 (109)
T ss_dssp             CCEECCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTB--TTBEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             cceEccHhHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhh--CceEEEEEECCCCHhHHHhCCCCcCCEEEEE
Confidence            57889999999888888999999999999999999999999999986  3699999999999999999999999999999


Q ss_pred             eCCCcCccccCCCCCHHHHHHHHHHhhCC
Q 026412          104 PKGNKDGEEYGGGRDLEDFVSFINEKCGT  132 (239)
Q Consensus       104 ~~g~~~~~~~~g~~~~~~l~~~l~~~~~~  132 (239)
                      ++| +....+.|..+.+++.+|+++.++.
T Consensus        80 ~~g-~~~~~~~g~~~~~~l~~~l~~~l~~  107 (109)
T 2yzu_A           80 KDG-QPVEVLVGAQPKRNYQAKIEKHLPA  107 (109)
T ss_dssp             ETT-EEEEEEESCCCHHHHHHHHHTTC--
T ss_pred             eCC-cEeeeEeCCCCHHHHHHHHHHHhhh
Confidence            665 6667889999999999999987653

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.88  E-value=6.7e-22  Score=147.89  Aligned_cols=108  Identities=22%  Similarity=0.545  Sum_probs=99.4

Q ss_pred             CCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE
Q 026412           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  101 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  101 (239)
                      ...+..++.++|++.+.++++++|.||++||++|+.+.|.|+++++.+.  +++.++.||++.+++++++|+|.++||++
T Consensus        37 ~~~v~~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~--~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~  114 (148)
T 3p2a_A           37 DGEVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERA--GKVRFVKVNTEAEPALSTRFRIRSIPTIM  114 (148)
T ss_dssp             CCCCEECCTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTT--TTCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             cCCceecCHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcC--CceEEEEEECcCCHHHHHHCCCCccCEEE
Confidence            4578999999999999889999999999999999999999999999985  46999999999999999999999999999


Q ss_pred             EEeCCCcCccccCCCCCHHHHHHHHHHhhCC
Q 026412          102 FFPKGNKDGEEYGGGRDLEDFVSFINEKCGT  132 (239)
Q Consensus       102 ~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~  132 (239)
                      +|++| +...++.|..+.+.+.+||++.++.
T Consensus       115 ~~~~G-~~~~~~~G~~~~~~l~~~l~~~l~~  144 (148)
T 3p2a_A          115 LYRNG-KMIDMLNGAVPKAPFDNWLDEQLSR  144 (148)
T ss_dssp             EEETT-EEEEEESSCCCHHHHHHHHHHHHHS
T ss_pred             EEECC-eEEEEEeCCCCHHHHHHHHHHHhcc
Confidence            99866 6677899999999999999988754

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.88  E-value=6e-22  Score=142.76  Aligned_cols=107  Identities=31%  Similarity=0.560  Sum_probs=96.6

Q ss_pred             CCCcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeE
Q 026412           22 ADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL  100 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  100 (239)
                      ++.+..+++++|++.+ .++++++|.||++||++|+.+.|.+.++++.+.  +++.++.||++.+++++++|+|.++|++
T Consensus        12 ~~~~~~~~~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~--~~v~~~~vd~d~~~~l~~~~~v~~~Pt~   89 (119)
T 1w4v_A           12 STTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQH--GKVVMAKVDIDDHTDLAIEYEVSAVPTV   89 (119)
T ss_dssp             CSEEECCSHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT--TSSEEEEEETTTTHHHHHHTTCCSSSEE
T ss_pred             ceEEEecChhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhc--CCeEEEEEeCCCCHHHHHHcCCCcccEE
Confidence            5678889999999977 778999999999999999999999999999885  3699999999999999999999999999


Q ss_pred             EEEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412          101 KFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus       101 ~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      ++|++| +...++.|..+.+.+.+||++.+|
T Consensus        90 ~~~~~G-~~~~~~~G~~~~~~l~~~l~~~l~  119 (119)
T 1w4v_A           90 LAMKNG-DVVDKFVGIKDEDQLEAFLKKLIG  119 (119)
T ss_dssp             EEEETT-EEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEeCC-cEEEEEcCCCCHHHHHHHHHHHhC
Confidence            999665 666788999999999999988764

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.88  E-value=7.6e-22  Score=146.21  Aligned_cols=107  Identities=28%  Similarity=0.598  Sum_probs=95.5

Q ss_pred             CCCcEEcChhhHHHHhc------------CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHH
Q 026412           22 ADDVVVLTEDNFEKEVG------------QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLA   89 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~------------~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~   89 (239)
                      ...+..++..+|...+.            ++++++|.||++||++|+.+.|.+.++++.+.  +++.++.||++.+++++
T Consensus        21 ~~~v~~l~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~   98 (141)
T 3hxs_A           21 QSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYA--GKIYIYKVNVDKEPELA   98 (141)
T ss_dssp             --CCEECCHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTT--TTCEEEEEETTTCHHHH
T ss_pred             CCCcccccHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhc--CceEEEEEECCCCHHHH
Confidence            45789999999999984            47999999999999999999999999999986  36999999999999999


Q ss_pred             HHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412           90 EKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus        90 ~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      ++|+|.++||+++|++++.. ..+.|..+.+.+.+||++.+.
T Consensus        99 ~~~~v~~~Pt~~~~~~~g~~-~~~~G~~~~~~l~~~l~~~l~  139 (141)
T 3hxs_A           99 RDFGIQSIPTIWFVPMKGEP-QVNMGALSKEQLKGYIDKVLL  139 (141)
T ss_dssp             HHTTCCSSSEEEEECSSSCC-EEEESCCCHHHHHHHHHHTTC
T ss_pred             HHcCCCCcCEEEEEeCCCCE-EEEeCCCCHHHHHHHHHHHHc
Confidence            99999999999999776554 488999999999999998764

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.88  E-value=8.3e-22  Score=138.73  Aligned_cols=104  Identities=24%  Similarity=0.549  Sum_probs=94.5

Q ss_pred             CCcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE
Q 026412           23 DDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  101 (239)
Q Consensus        23 ~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  101 (239)
                      +.+..+++++|++.+ .++++++|.||++||++|+.+.|.+.++++.++  +++.++.+|++++++++++|+|.++|+++
T Consensus         2 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~   79 (107)
T 2i4a_A            2 EHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFA--GKVTVAKVNIDDNPETPNAYQVRSIPTLM   79 (107)
T ss_dssp             CCEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHT--TSEEEEEEETTTCCHHHHHTTCCSSSEEE
T ss_pred             CceeecchhhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhC--CcEEEEEEECCCCHHHHHhcCCCccCEEE
Confidence            468899999999887 788999999999999999999999999999986  36999999999999999999999999999


Q ss_pred             EEeCCCcCccccCCCCCHHHHHHHHHHh
Q 026412          102 FFPKGNKDGEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus       102 ~~~~g~~~~~~~~g~~~~~~l~~~l~~~  129 (239)
                      +|++| +...++.|..+.+.+.+||++.
T Consensus        80 ~~~~G-~~~~~~~G~~~~~~l~~~l~~~  106 (107)
T 2i4a_A           80 LVRDG-KVIDKKVGALPKSQLKAWVESA  106 (107)
T ss_dssp             EEETT-EEEEEEESCCCHHHHHHHHHHT
T ss_pred             EEeCC-EEEEEecCCCCHHHHHHHHHhc
Confidence            99665 6667789999999999999864

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.88  E-value=9.1e-22  Score=139.91  Aligned_cols=106  Identities=31%  Similarity=0.648  Sum_probs=95.3

Q ss_pred             CCcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE
Q 026412           23 DDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  101 (239)
Q Consensus        23 ~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  101 (239)
                      ..+..+++++|.+.+ .++++++|.||++||++|+.+.|.+.++++.++  +++.++.||++.+++++++|+|.++||++
T Consensus         5 ~~v~~l~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~   82 (112)
T 1t00_A            5 GTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYG--DKIEIVKLNIDENPGTAAKYGVMSIPTLN   82 (112)
T ss_dssp             CCCEEECTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             ceEEecchhhHHHHHhhCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhc--CCeEEEEEEcCCCHHHHHhCCCCcccEEE
Confidence            457899999998876 678999999999999999999999999999985  35999999999999999999999999999


Q ss_pred             EEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412          102 FFPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus       102 ~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      +|++| +...++.|..+.+++.++|++.+.
T Consensus        83 ~~~~G-~~~~~~~G~~~~~~l~~~l~~~l~  111 (112)
T 1t00_A           83 VYQGG-EVAKTIVGAKPKAAIVRDLEDFIA  111 (112)
T ss_dssp             EEETT-EEEEEEESCCCHHHHHHHTHHHHC
T ss_pred             EEeCC-EEEEEEeCCCCHHHHHHHHHHHhh
Confidence            99766 666788999999999999988753

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.88  E-value=9.4e-22  Score=138.63  Aligned_cols=104  Identities=28%  Similarity=0.609  Sum_probs=93.7

Q ss_pred             CcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEE
Q 026412           24 DVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF  102 (239)
Q Consensus        24 ~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~  102 (239)
                      .+..+++++|++.+ .++++++|.||++||++|+.+.|.+.++++.++  +++.++.||++.+++++++|+|.++||+++
T Consensus         2 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   79 (107)
T 1dby_A            2 EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYK--DKLKCVKLNTDESPNVASEYGIRSIPTIMV   79 (107)
T ss_dssp             CCEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTCEEEEEETTTCHHHHHHHTCCSSCEEEE
T ss_pred             ccEeccHHHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhC--CceEEEEEECCCCHHHHHHCCCCcCCEEEE
Confidence            46789999999977 678999999999999999999999999999986  359999999999999999999999999999


Q ss_pred             EeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412          103 FPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus       103 ~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      +++| +...++.|..+.+++.++|++.+
T Consensus        80 ~~~G-~~~~~~~G~~~~~~l~~~l~~~l  106 (107)
T 1dby_A           80 FKGG-KKCETIIGAVPKATIVQTVEKYL  106 (107)
T ss_dssp             ESSS-SEEEEEESCCCHHHHHHHHHHHC
T ss_pred             EeCC-EEEEEEeCCCCHHHHHHHHHHHh
Confidence            9665 66678899999999999998764

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.88  E-value=1.1e-21  Score=139.86  Aligned_cols=107  Identities=27%  Similarity=0.556  Sum_probs=97.0

Q ss_pred             CCCcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeE
Q 026412           22 ADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL  100 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  100 (239)
                      ++.+..+++++|++.+ .++++++|.||++||++|+.+.|.++++++.++  +++.++.||++.+++++++|+|.++|++
T Consensus         6 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~~v~~~~v~~~~~~~~~~~~~v~~~Pt~   83 (115)
T 1thx_A            6 SKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYS--DRLKVVKLEIDPNPTTVKKYKVEGVPAL   83 (115)
T ss_dssp             CCSEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTT--TTCEEEEEESTTCHHHHHHTTCCSSSEE
T ss_pred             cCceEEeeccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhC--CcEEEEEEEcCCCHHHHHHcCCCceeEE
Confidence            4568999999999886 788999999999999999999999999999986  3599999999999999999999999999


Q ss_pred             EEEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412          101 KFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus       101 ~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      ++|++| +...++.|.++.+.+.+||++.++
T Consensus        84 ~~~~~G-~~~~~~~g~~~~~~l~~~l~~~l~  113 (115)
T 1thx_A           84 RLVKGE-QILDSTEGVISKDKLLSFLDTHLN  113 (115)
T ss_dssp             EEEETT-EEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEcCC-EEEEEecCCCCHHHHHHHHHHHhc
Confidence            999665 666788999999999999998765

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.88  E-value=8.7e-22  Score=139.77  Aligned_cols=102  Identities=32%  Similarity=0.564  Sum_probs=91.9

Q ss_pred             CCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEE
Q 026412           23 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF  102 (239)
Q Consensus        23 ~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~  102 (239)
                      ......+.++|++.+.++++++|.||++||++|+.+.|.++++++.++   ++.++.||++.+++++++|+|.++||+++
T Consensus         7 ~~~~~~~~~~f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~---~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~   83 (109)
T 3f3q_A            7 MVTQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP---QADFYKLDVDELGDVAQKNEVSAMPTLLL   83 (109)
T ss_dssp             CCEECCSHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             cccCCCCHHHHHHHHhcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC---CCEEEEEECCCCHHHHHHcCCCccCEEEE
Confidence            345567889999999889999999999999999999999999999985   59999999999999999999999999999


Q ss_pred             EeCCCcCccccCCCCCHHHHHHHHHHh
Q 026412          103 FPKGNKDGEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus       103 ~~~g~~~~~~~~g~~~~~~l~~~l~~~  129 (239)
                      |++| +...++.|. +.+++.++|++.
T Consensus        84 ~~~G-~~~~~~~G~-~~~~l~~~i~~~  108 (109)
T 3f3q_A           84 FKNG-KEVAKVVGA-NPAAIKQAIAAN  108 (109)
T ss_dssp             EETT-EEEEEEESS-CHHHHHHHHHHH
T ss_pred             EECC-EEEEEEeCC-CHHHHHHHHHhh
Confidence            9865 667788888 779999999875

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.88  E-value=5.3e-22  Score=147.20  Aligned_cols=107  Identities=25%  Similarity=0.447  Sum_probs=96.8

Q ss_pred             CCCcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeE
Q 026412           22 ADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL  100 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  100 (239)
                      ...+..+++++|.+.+ .++++++|.||++||++|+.+.|.|.++++.++  +++.++.||++.+++++++|+|.++||+
T Consensus         5 ~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~--~~v~~~~vd~~~~~~l~~~~~v~~~Pt~   82 (140)
T 3hz4_A            5 GSSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYG--SSAVFGRINIATNPWTAEKYGVQGTPTF   82 (140)
T ss_dssp             TTTEEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHT--TTSEEEEEETTTCHHHHHHHTCCEESEE
T ss_pred             CcceEEcchHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHHHHHHHHhC--CceEEEEEECCcCHhHHHHCCCCcCCEE
Confidence            5678999999999554 789999999999999999999999999999986  3599999999999999999999999999


Q ss_pred             EEEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412          101 KFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus       101 ~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      ++|++| +...++.|..+.+.+.+||++.++
T Consensus        83 ~~~~~G-~~~~~~~G~~~~~~l~~~l~~~l~  112 (140)
T 3hz4_A           83 KFFCHG-RPVWEQVGQIYPSILKNAVRDMLQ  112 (140)
T ss_dssp             EEEETT-EEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             EEEeCC-cEEEEEcCCCCHHHHHHHHHHHhc
Confidence            999776 667788999999999999988753

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.88  E-value=7.7e-22  Score=137.87  Aligned_cols=103  Identities=33%  Similarity=0.597  Sum_probs=94.3

Q ss_pred             cEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEe
Q 026412           25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFP  104 (239)
Q Consensus        25 v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~  104 (239)
                      +..+++++|++.+.++++++|.||++||++|+.+.|.+.++++.++   ++.++.+|++.+++++++|++.++|++++|+
T Consensus         1 V~~l~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~   77 (104)
T 2e0q_A            1 VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYP---QVGFGKLNSDENPDIAARYGVMSLPTVIFFK   77 (104)
T ss_dssp             CEECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTCHHHHHHTTCCSSCEEEEEE
T ss_pred             CeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHhHHHHHHHHHcC---CceEEEEECCCCHHHHHhCCccccCEEEEEE
Confidence            4678999999999888999999999999999999999999999986   3999999999999999999999999999996


Q ss_pred             CCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412          105 KGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus       105 ~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      +| +...++.|..+.+++.+|+++.++
T Consensus        78 ~g-~~~~~~~g~~~~~~l~~~l~~~l~  103 (104)
T 2e0q_A           78 DG-EPVDEIIGAVPREEIEIRIKNLLG  103 (104)
T ss_dssp             TT-EEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             CC-eEhhhccCCCCHHHHHHHHHHHhc
Confidence            66 666788999999999999998764

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.88  E-value=5.3e-22  Score=143.39  Aligned_cols=109  Identities=28%  Similarity=0.546  Sum_probs=95.8

Q ss_pred             CCCcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeE
Q 026412           22 ADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL  100 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  100 (239)
                      ++.+..+++++|.+.+ .++++++|.||++||++|+.+.|.++++++.++.  ++.++.||++.+++++++|+|.++||+
T Consensus         2 ~~~v~~l~~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~   79 (122)
T 3aps_A            2 PQASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKG--KVRAGKVDCQAYPQTCQKAGIKAYPSV   79 (122)
T ss_dssp             CCCSEECCHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CcchhcCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEeCcCCHHHHHHcCCCccceE
Confidence            4568899999997654 7889999999999999999999999999999863  699999999999999999999999999


Q ss_pred             EEEeCCCcCccccCCC----CCHHHHHHHHHHhhCCC
Q 026412          101 KFFPKGNKDGEEYGGG----RDLEDFVSFINEKCGTS  133 (239)
Q Consensus       101 ~~~~~g~~~~~~~~g~----~~~~~l~~~l~~~~~~~  133 (239)
                      ++|++|+. ..++.|.    ++.+.+.+||++.++..
T Consensus        80 ~~~~~~~~-~~~~~g~~~~~~~~~~l~~~l~~~l~~~  115 (122)
T 3aps_A           80 KLYQYERA-KKSIWEEQINSRDAKTIAALIYGKLETL  115 (122)
T ss_dssp             EEEEEEGG-GTEEEEEEECCSCHHHHHHHHHHHHHCC
T ss_pred             EEEeCCCc-cceeeccccCcCCHHHHHHHHHHHHHhh
Confidence            99987754 5566665    89999999999887543

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.88  E-value=8.4e-23  Score=143.93  Aligned_cols=98  Identities=18%  Similarity=0.201  Sum_probs=78.7

Q ss_pred             ChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCc
Q 026412           29 TEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK  108 (239)
Q Consensus        29 ~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~  108 (239)
                      +.++|++.+.++++++|.||++||++|+.+.|.++++++.++   ++.++.||++.+++++++|+|.++||+++|++| +
T Consensus         7 ~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~---~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G-~   82 (105)
T 4euy_A            7 TIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN---YVEKIEILLQDMQEIAGRYAVFTGPTVLLFYNG-K   82 (105)
T ss_dssp             ---CCSSSTTCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT---TEEEEEEEECCC---------CCCCEEEEEETT-E
T ss_pred             CHHHHHHHHhcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC---CceEEEEECCCCHHHHHhcCCCCCCEEEEEeCC-e
Confidence            567888888889999999999999999999999999999984   699999999999999999999999999999866 6


Q ss_pred             CccccCCCCCHHHHHHHHHHhh
Q 026412          109 DGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus       109 ~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      ...++.|..+.+++.++|++.+
T Consensus        83 ~~~~~~g~~~~~~l~~~l~~~~  104 (105)
T 4euy_A           83 EILRESRFISLENLERTIQLFE  104 (105)
T ss_dssp             EEEEEESSCCHHHHHHHHHTTC
T ss_pred             EEEEEeCCcCHHHHHHHHHHhh
Confidence            6788899999999999998754

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.88  E-value=6.4e-22  Score=144.65  Aligned_cols=106  Identities=32%  Similarity=0.658  Sum_probs=95.7

Q ss_pred             CCCcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeE
Q 026412           22 ADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL  100 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  100 (239)
                      +..+..++.++|++.+ .++++++|.||++||++|+.+.|.++++++.++  +++.++.||++++++++++|+|.++||+
T Consensus        21 ~~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~~~~~~l~~~~~v~~~Pt~   98 (128)
T 2o8v_B           21 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQ--GKLTVAKLNIDQNPGTAPKYGIRGIPTL   98 (128)
T ss_dssp             CCCSEEECTTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTT--TTEEEEEEETTTCCTTSGGGTCCSSSEE
T ss_pred             ccccEecChhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhc--CCeEEEEEECCCCHHHHHHcCCCccCEE
Confidence            3568899999999776 778999999999999999999999999999986  3599999999999999999999999999


Q ss_pred             EEEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412          101 KFFPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus       101 ~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      ++|++| +...++.|..+.+++.+||++.+
T Consensus        99 ~~~~~G-~~~~~~~G~~~~~~l~~~l~~~l  127 (128)
T 2o8v_B           99 LLFKNG-EVAATKVGALSKGQLKEFLDANL  127 (128)
T ss_dssp             EEEETT-EEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEEeCC-EEEEEEcCCCCHHHHHHHHHHhh
Confidence            999665 66678899999999999998865

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.87  E-value=1.7e-21  Score=137.50  Aligned_cols=102  Identities=24%  Similarity=0.463  Sum_probs=88.9

Q ss_pred             cEEc-ChhhHHHHh--cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE
Q 026412           25 VVVL-TEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  101 (239)
Q Consensus        25 v~~l-~~~~f~~~~--~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  101 (239)
                      +..+ +.++|++.+  .++++++|.||++||++|+.+.|.++++++.++   ++.++.||++++++++++|+|.++||++
T Consensus         3 v~~i~~~~~~~~~~~~~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   79 (107)
T 1gh2_A            3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP---QAVFLEVDVHQCQGTAATNNISATPTFQ   79 (107)
T ss_dssp             EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSHHHHHHTTCCSSSEEE
T ss_pred             eEEecCHHHHHHHHHhCCCCEEEEEEECCCChhhHHHHHHHHHHHHHCC---CcEEEEEECccCHHHHHhcCCCcccEEE
Confidence            3444 678999999  578999999999999999999999999999983   6999999999999999999999999999


Q ss_pred             EEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412          102 FFPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus       102 ~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      +|++| +...++.|. +.+++.+||++.+|
T Consensus        80 ~~~~G-~~~~~~~G~-~~~~l~~~l~~~lg  107 (107)
T 1gh2_A           80 FFRNK-VRIDQYQGA-DAVGLEEKIKQHLE  107 (107)
T ss_dssp             EEETT-EEEEEEESS-CHHHHHHHHHHHHC
T ss_pred             EEECC-eEEEEEeCC-CHHHHHHHHHHhcC
Confidence            99776 566678885 55669999988764

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.87  E-value=8.5e-22  Score=143.23  Aligned_cols=111  Identities=30%  Similarity=0.556  Sum_probs=97.0

Q ss_pred             cCCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeE
Q 026412           21 LADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL  100 (239)
Q Consensus        21 ~~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  100 (239)
                      ....+..+++++|++.+.+  .++|.||++||++|+.+.|.+.++++.+.. .++.++.||++++++++++|+|.++||+
T Consensus         5 ~~~~v~~l~~~~f~~~~~~--~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~-~~v~~~~vd~~~~~~~~~~~~v~~~Pt~   81 (126)
T 1x5e_A            5 SSGNVRVITDENWRELLEG--DWMIEFYAPWCPACQNLQPEWESFAEWGED-LEVNIAKVDVTEQPGLSGRFIINALPTI   81 (126)
T ss_dssp             CCCSEEECCTTTHHHHTSS--EEEEEEECSSCHHHHHHHHHHHHHHHHHGG-GTCEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CCCccEEecHHHHHHHhCC--CEEEEEECCCCHHHHHHhHHHHHHHHHhcc-CCeEEEEEECcCCHHHHHHcCCcccCEE
Confidence            4567899999999998754  399999999999999999999999998763 3699999999999999999999999999


Q ss_pred             EEEeCCCcCccccCCCCCHHHHHHHHHHhhCCCCCC
Q 026412          101 KFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDG  136 (239)
Q Consensus       101 ~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~  136 (239)
                      ++|++| + ..++.|..+.+++.+||++.++.....
T Consensus        82 ~~~~~G-~-~~~~~G~~~~~~l~~~l~~~~~~~~~~  115 (126)
T 1x5e_A           82 YHCKDG-E-FRRYQGPRTKKDFINFISDKEWKSIEP  115 (126)
T ss_dssp             EEEETT-E-EEECCSCCCHHHHHHHHHTCGGGGSCE
T ss_pred             EEEeCC-e-EEEeecCCCHHHHHHHHHHHhhccCCC
Confidence            999776 4 578999999999999999887654433

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.87  E-value=6.4e-22  Score=142.65  Aligned_cols=108  Identities=41%  Similarity=0.848  Sum_probs=95.3

Q ss_pred             CCCcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccC---CCCeEEEEEeCccchhHHHHcCCCCC
Q 026412           22 ADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTL---EDDVVVANLDADKYKDLAEKYGVSGF   97 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~---~~~v~~~~vd~~~~~~l~~~~~i~~~   97 (239)
                      ...+..+++++|++.+ .++++++|.||++||++|+.+.|.|+++++.++.   ..++.++.||++.++ +++  +|.++
T Consensus         6 ~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~--~v~~~   82 (121)
T 2djj_A            6 EGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-VPD--EIQGF   82 (121)
T ss_dssp             SCSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC-CSS--CCSSS
T ss_pred             CCCeEEecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc-ccc--ccCcC
Confidence            4678999999999987 7889999999999999999999999999999874   247999999999775 555  99999


Q ss_pred             CeEEEEeCCCcC-ccccCCCCCHHHHHHHHHHhhCC
Q 026412           98 PTLKFFPKGNKD-GEEYGGGRDLEDFVSFINEKCGT  132 (239)
Q Consensus        98 Pt~~~~~~g~~~-~~~~~g~~~~~~l~~~l~~~~~~  132 (239)
                      ||+++|++|++. ..++.|.++.+++.+||++.++.
T Consensus        83 Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~  118 (121)
T 2djj_A           83 PTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKY  118 (121)
T ss_dssp             SEEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTSSS
T ss_pred             CeEEEEeCcCCCCceEecCCCCHHHHHHHHHhccCc
Confidence            999999988653 78899999999999999987653

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.87  E-value=4.9e-22  Score=144.02  Aligned_cols=106  Identities=29%  Similarity=0.592  Sum_probs=93.6

Q ss_pred             hcCCCcEEcChhhHHHHhc--CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc-cchhHHHHcCCCC
Q 026412           20 ALADDVVVLTEDNFEKEVG--QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-KYKDLAEKYGVSG   96 (239)
Q Consensus        20 ~~~~~v~~l~~~~f~~~~~--~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~-~~~~l~~~~~i~~   96 (239)
                      .....+..+++++|.+.+.  ++++++|.||++||++|+.+.|.++++++.++   ++.++.||++ ++++++++|+|.+
T Consensus        15 ~~~~~v~~l~~~~~~~~~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~---~~~~~~vd~~~~~~~~~~~~~v~~   91 (124)
T 1faa_A           15 AIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL---DVIFLKLDCNQENKTLAKELGIRV   91 (124)
T ss_dssp             TTTTSEEEECTTTHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSTTHHHHHHHCCSS
T ss_pred             hcCCceEEecchhHHHHHHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCC---CCEEEEEecCcchHHHHHHcCCCe
Confidence            4467889999999999884  78999999999999999999999999999985   5999999998 6899999999999


Q ss_pred             CCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412           97 FPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus        97 ~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      +||++++++| +...++.|.. .+++.++|++..
T Consensus        92 ~Pt~~~~~~G-~~~~~~~G~~-~~~l~~~i~~~~  123 (124)
T 1faa_A           92 VPTFKILKEN-SVVGEVTGAK-YDKLLEAIQAAR  123 (124)
T ss_dssp             SSEEEEEETT-EEEEEEESSC-HHHHHHHHHHHT
T ss_pred             eeEEEEEeCC-cEEEEEcCCC-HHHHHHHHHHhh
Confidence            9999999876 5666778875 899999998753

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.87  E-value=3e-21  Score=139.42  Aligned_cols=106  Identities=24%  Similarity=0.543  Sum_probs=94.3

Q ss_pred             cCCCcEEcChhhHHHHh-c---CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCC
Q 026412           21 LADDVVVLTEDNFEKEV-G---QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG   96 (239)
Q Consensus        21 ~~~~v~~l~~~~f~~~~-~---~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~   96 (239)
                      ....+..++.++|++.+ .   ++++++|.||++||++|+.+.|.++++++.++   ++.++.||++++++++++|+|.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~   87 (122)
T 2vlu_A           11 AAEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFP---NAVFLKVDVDELKPIAEQFSVEA   87 (122)
T ss_dssp             -CCCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTCHHHHHHTTCCS
T ss_pred             CCcceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC---CcEEEEEECCCCHHHHHHcCCCc
Confidence            34567778999999988 3   58999999999999999999999999999986   39999999999999999999999


Q ss_pred             CCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412           97 FPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus        97 ~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      +||+++|++| +...++.|.. .+++.+||++.++
T Consensus        88 ~Pt~~~~~~G-~~~~~~~G~~-~~~l~~~l~~~l~  120 (122)
T 2vlu_A           88 MPTFLFMKEG-DVKDRVVGAI-KEELTAKVGLHAA  120 (122)
T ss_dssp             SSEEEEEETT-EEEEEEESSC-HHHHHHHHHHHHS
T ss_pred             ccEEEEEeCC-EEEEEEeCcC-HHHHHHHHHHHhc
Confidence            9999999766 6667888988 9999999998765

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.87  E-value=2.6e-21  Score=135.66  Aligned_cols=102  Identities=26%  Similarity=0.585  Sum_probs=92.4

Q ss_pred             cEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEE
Q 026412           25 VVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF  103 (239)
Q Consensus        25 v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~  103 (239)
                      +..+++++|++.+ .++++++|.||++||++|+.+.|.+.++++.++  +++.++.+|++.+++++++|++.++||++++
T Consensus         2 v~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   79 (105)
T 1fb6_A            2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYS--GKIAVYKLNTDEAPGIATQYNIRSIPTVLFF   79 (105)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             ceechhhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhc--CceEEEEEcCcchHHHHHhCCCCcccEEEEE
Confidence            5788999999977 678999999999999999999999999999986  3599999999999999999999999999999


Q ss_pred             eCCCcCccccCCCCCHHHHHHHHHHh
Q 026412          104 PKGNKDGEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus       104 ~~g~~~~~~~~g~~~~~~l~~~l~~~  129 (239)
                      ++| +...++.|..+.+.+.++|++.
T Consensus        80 ~~g-~~~~~~~G~~~~~~l~~~l~~~  104 (105)
T 1fb6_A           80 KNG-ERKESIIGAVPKSTLTDSIEKY  104 (105)
T ss_dssp             ETT-EEEEEEEECCCHHHHHHHHHHH
T ss_pred             eCC-eEEEEEecCCCHHHHHHHHHhh
Confidence            766 6667788999999999999875

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.87  E-value=2.7e-21  Score=137.34  Aligned_cols=104  Identities=28%  Similarity=0.544  Sum_probs=91.9

Q ss_pred             CCCcEEcChhhHHHHhc--CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc-cchhHHHHcCCCCCC
Q 026412           22 ADDVVVLTEDNFEKEVG--QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-KYKDLAEKYGVSGFP   98 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~--~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~-~~~~l~~~~~i~~~P   98 (239)
                      ...+..+++++|++.+.  ++++++|.||++||++|+.+.|.+.++++.++   ++.++.||++ .+++++++|+|.++|
T Consensus         4 ~~~v~~l~~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~~~~~~~~~~v~~~P   80 (111)
T 2pu9_C            4 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL---DVIFLKLDCNQENKTLAKELGIRVVP   80 (111)
T ss_dssp             TTSEEEECTTTHHHHHTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSTTHHHHHHHCCSBSS
T ss_pred             cCccEEechHHHHHHHHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCC---CeEEEEEecCcchHHHHHHcCCCeee
Confidence            45788999999999994  58999999999999999999999999999985   5999999998 789999999999999


Q ss_pred             eEEEEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412           99 TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus        99 t~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      |++++++| +...++.|. +.+++.++|++..
T Consensus        81 t~~~~~~G-~~~~~~~G~-~~~~l~~~l~~~~  110 (111)
T 2pu9_C           81 TFKILKEN-SVVGEVTGA-KYDKLLEAIQAAR  110 (111)
T ss_dssp             EEEEESSS-SEEEEEESS-CHHHHHHHHHHHH
T ss_pred             EEEEEeCC-cEEEEEcCC-CHHHHHHHHHHhh
Confidence            98888766 566677887 4899999998764

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.86  E-value=2.2e-21  Score=138.24  Aligned_cols=104  Identities=26%  Similarity=0.583  Sum_probs=94.1

Q ss_pred             CCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE
Q 026412           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  101 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  101 (239)
                      ++....++.++|++.+.++++++|.||++||++|+.+.|.++++++.++   ++.++.||++.+++++++|+|.++||++
T Consensus         8 ~~~~~~~~~~~f~~~~~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~---~v~~~~vd~~~~~~~~~~~~v~~~Pt~~   84 (112)
T 1syr_A            8 HMVKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT---KMVFIKVDVDEVSEVTEKENITSMPTFK   84 (112)
T ss_dssp             -CCEEECSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTTHHHHHHTTCCSSSEEE
T ss_pred             eeEEEECCHHHHHHHHccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC---CCEEEEEECCCCHHHHHHcCCCcccEEE
Confidence            5677889999999999889999999999999999999999999999975   5999999999999999999999999999


Q ss_pred             EEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412          102 FFPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus       102 ~~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      ++++| +...++.|. +.+++.+||++.+
T Consensus        85 ~~~~G-~~~~~~~G~-~~~~l~~~l~~~l  111 (112)
T 1syr_A           85 VYKNG-SSVDTLLGA-NDSALKQLIEKYA  111 (112)
T ss_dssp             EEETT-EEEEEEESC-CHHHHHHHHHTTC
T ss_pred             EEECC-cEEEEEeCC-CHHHHHHHHHHhh
Confidence            99866 666778898 9999999998653

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.86  E-value=2.5e-21  Score=140.89  Aligned_cols=103  Identities=26%  Similarity=0.380  Sum_probs=92.9

Q ss_pred             CcEEcCh-hhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEE
Q 026412           24 DVVVLTE-DNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF  102 (239)
Q Consensus        24 ~v~~l~~-~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~  102 (239)
                      -+..+++ ++|++.+.++++++|.||++||++|+.+.|.+.++++.++   ++.++.||++++++++++|+|.++||+++
T Consensus        20 mv~~l~~~~~f~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~d~~~~l~~~~~v~~~Pt~~i   96 (125)
T 1r26_A           20 SVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP---TVKFAKVDADNNSEIVSKCRVLQLPTFII   96 (125)
T ss_dssp             CCEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT---TSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             ceEECCCHHHHHHHHccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC---CCEEEEEECCCCHHHHHHcCCCcccEEEE
Confidence            3778888 9999999889999999999999999999999999999984   69999999999999999999999999999


Q ss_pred             EeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412          103 FPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus       103 ~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      |++| +....+.| .+.+++.++|++.+.
T Consensus        97 ~~~G-~~~~~~~G-~~~~~l~~~l~~~l~  123 (125)
T 1r26_A           97 ARSG-KMLGHVIG-ANPGMLRQKLRDIIK  123 (125)
T ss_dssp             EETT-EEEEEEES-SCHHHHHHHHHHHHH
T ss_pred             EeCC-eEEEEEeC-CCHHHHHHHHHHHhc
Confidence            9766 56677888 689999999988653

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.86  E-value=3.6e-21  Score=152.32  Aligned_cols=111  Identities=25%  Similarity=0.531  Sum_probs=100.7

Q ss_pred             CCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE
Q 026412           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  101 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  101 (239)
                      ...+..+++.+|+..+.++++++|.||++||++|+.+.|.|+++++.+.  +.+.++.||++.+++++++|+|.++||++
T Consensus        96 ~~~v~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~--~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~  173 (210)
T 3apq_A           96 DPEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVD--GLLRIGAVNCGDDRMLCRMKGVNSYPSLF  173 (210)
T ss_dssp             CTTSEECCHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTB--TTBEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CCceEEecHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhc--CceEEEEEECCccHHHHHHcCCCcCCeEE
Confidence            4568899999999999889999999999999999999999999999986  36999999999999999999999999999


Q ss_pred             EEeCCCcCccccCCCCCHHHHHHHHHHhhCCCCC
Q 026412          102 FFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRD  135 (239)
Q Consensus       102 ~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~  135 (239)
                      +|++| +...++.|.++.+.+.+||++.++....
T Consensus       174 ~~~~G-~~~~~~~G~~~~~~l~~~i~~~l~~~~~  206 (210)
T 3apq_A          174 IFRSG-MAAVKYNGDRSKESLVAFAMQHVRSTVT  206 (210)
T ss_dssp             EECTT-SCCEECCSCCCHHHHHHHHHHHHHCCSS
T ss_pred             EEECC-CceeEecCCCCHHHHHHHHHHhCcccce
Confidence            99665 6678899999999999999998876544

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.86  E-value=3.1e-21  Score=138.95  Aligned_cols=108  Identities=28%  Similarity=0.560  Sum_probs=95.7

Q ss_pred             cCCCcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCe
Q 026412           21 LADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT   99 (239)
Q Consensus        21 ~~~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt   99 (239)
                      ....+..++.++|.+.+ .++++++|.||++||++|+.+.|.++++++.++  +++.++.||++.+++++++|+|.++||
T Consensus        10 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~i~~~Pt   87 (121)
T 2i1u_A           10 EKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERA--TDLTVAKLDVDTNPETARNFQVVSIPT   87 (121)
T ss_dssp             --CCSEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTCEEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             hcccceecCHHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhc--CCeEEEEEECCCCHHHHHhcCCCcCCE
Confidence            35678999999999876 778999999999999999999999999999985  369999999999999999999999999


Q ss_pred             EEEEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412          100 LKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus       100 ~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      +++|++| +...++.|..+.+.+.+||++.++
T Consensus        88 ~~~~~~g-~~~~~~~G~~~~~~l~~~l~~~l~  118 (121)
T 2i1u_A           88 LILFKDG-QPVKRIVGAKGKAALLRELSDVVP  118 (121)
T ss_dssp             EEEEETT-EEEEEEESCCCHHHHHHHTCSCCC
T ss_pred             EEEEECC-EEEEEecCCCCHHHHHHHHHHHHh
Confidence            9999866 666788999999999999976543

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.86  E-value=4.4e-21  Score=136.28  Aligned_cols=104  Identities=22%  Similarity=0.606  Sum_probs=91.9

Q ss_pred             CcEEc-ChhhHHHHhcC----CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCC
Q 026412           24 DVVVL-TEDNFEKEVGQ----DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP   98 (239)
Q Consensus        24 ~v~~l-~~~~f~~~~~~----~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P   98 (239)
                      .+..+ +.++|++.+..    +++++|.||++||++|+.+.|.++++++.++.  ++.++.||++.+++++++|+|.++|
T Consensus         3 ~v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~P   80 (112)
T 1ep7_A            3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAG--KVIFLKVDVDAVAAVAEAAGITAMP   80 (112)
T ss_dssp             SEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTTHHHHHHHTCCBSS
T ss_pred             cEEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC--CeEEEEEECCchHHHHHHcCCCccc
Confidence            45666 67899999854    89999999999999999999999999999863  6999999999999999999999999


Q ss_pred             eEEEEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412           99 TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus        99 t~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      |++++++| +...++.|. +.+++.++|++.+.
T Consensus        81 t~~~~~~G-~~~~~~~G~-~~~~l~~~l~~~l~  111 (112)
T 1ep7_A           81 TFHVYKDG-VKADDLVGA-SQDKLKALVAKHAA  111 (112)
T ss_dssp             EEEEEETT-EEEEEEESC-CHHHHHHHHHHHHC
T ss_pred             EEEEEECC-eEEEEEcCC-CHHHHHHHHHHHhc
Confidence            99999766 666778888 99999999988753

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.86  E-value=4.3e-21  Score=136.48  Aligned_cols=103  Identities=22%  Similarity=0.452  Sum_probs=87.3

Q ss_pred             cEEcCh-hhHHHHhcC---CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeE
Q 026412           25 VVVLTE-DNFEKEVGQ---DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL  100 (239)
Q Consensus        25 v~~l~~-~~f~~~~~~---~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  100 (239)
                      +..+++ ++|++.+.+   +++++|.||++||++|+.+.|.++++++.+.. +++.++.||++++++++++|+|.++||+
T Consensus         2 v~~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   80 (112)
T 3d6i_A            2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSN-SNVSFLSIDADENSEISELFEISAVPYF   80 (112)
T ss_dssp             EEEECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGG-TTSEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             ccccCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCC-CCEEEEEEecccCHHHHHHcCCCcccEE
Confidence            566776 999999965   89999999999999999999999999998632 3699999999999999999999999999


Q ss_pred             EEEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412          101 KFFPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus       101 ~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      ++|++| +...++.|. ..+++.++|++.+
T Consensus        81 ~~~~~G-~~~~~~~G~-~~~~l~~~l~~~~  108 (112)
T 3d6i_A           81 IIIHKG-TILKELSGA-DPKEYVSLLEDCK  108 (112)
T ss_dssp             EEEETT-EEEEEECSC-CHHHHHHHHHHHH
T ss_pred             EEEECC-EEEEEecCC-CHHHHHHHHHHHH
Confidence            999766 666778887 5567999998765

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.86  E-value=4.9e-21  Score=134.34  Aligned_cols=97  Identities=30%  Similarity=0.664  Sum_probs=88.1

Q ss_pred             cChhhHHHHhc--CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeC
Q 026412           28 LTEDNFEKEVG--QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPK  105 (239)
Q Consensus        28 l~~~~f~~~~~--~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~  105 (239)
                      .+.++|++.+.  ++++++|.||++||++|+.+.|.++++++.++   ++.++.||++++++++++|++.++||+++|++
T Consensus         6 ~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   82 (105)
T 3m9j_A            6 ESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASESEVKSMPTFQFFKK   82 (105)
T ss_dssp             CSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHST---TSEEEEEETTTCHHHHHHTTCCBSSEEEEEET
T ss_pred             CCHHHHHHHHHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHcc---CeEEEEEEhhhhHHHHHHcCCCcCcEEEEEEC
Confidence            36788999885  78999999999999999999999999999985   49999999999999999999999999999977


Q ss_pred             CCcCccccCCCCCHHHHHHHHHHh
Q 026412          106 GNKDGEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus       106 g~~~~~~~~g~~~~~~l~~~l~~~  129 (239)
                      | +...++.|. +.+++.+++++.
T Consensus        83 g-~~~~~~~g~-~~~~l~~~l~~~  104 (105)
T 3m9j_A           83 G-QKVGEFSGA-NKEKLEATINEL  104 (105)
T ss_dssp             T-EEEEEEESS-CHHHHHHHHHHH
T ss_pred             C-eEEEEEeCC-CHHHHHHHHHHh
Confidence            6 566778898 999999999875

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.86  E-value=2.9e-21  Score=140.36  Aligned_cols=111  Identities=15%  Similarity=0.157  Sum_probs=96.3

Q ss_pred             CcEEcChhhHH-----HHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEe--CccchhHHHHcCCCC
Q 026412           24 DVVVLTEDNFE-----KEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD--ADKYKDLAEKYGVSG   96 (239)
Q Consensus        24 ~v~~l~~~~f~-----~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd--~~~~~~l~~~~~i~~   96 (239)
                      .+..++..+|+     ....++++++|.||++||++|+.+.|.+.++++.+.  +++.++.||  ++.+.+++++|+|.+
T Consensus         5 ~~~~l~~~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~--~~v~~~~v~~~~d~~~~~~~~~~v~~   82 (126)
T 2l57_A            5 GIKQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKERE--GKFNIYYARLEEEKNIDLAYKYDANI   82 (126)
T ss_dssp             CSSCTTTTCCSEESSTTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSS--SSCEEEEEETTSSHHHHHHHHTTCCS
T ss_pred             ccCCCCccccchhHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhc--CCeEEEEEeCCCCchHHHHHHcCCcc
Confidence            34556666666     555778999999999999999999999999999986  479999999  999999999999999


Q ss_pred             CCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhCCCCCC
Q 026412           97 FPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDG  136 (239)
Q Consensus        97 ~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~  136 (239)
                      +||+++|+.+|+...++.|..+.+++.++|++.+++....
T Consensus        83 ~Pt~~~~~~~G~~~~~~~G~~~~~~l~~~l~~~~~~~~~~  122 (126)
T 2l57_A           83 VPTTVFLDKEGNKFYVHQGLMRKNNIETILNSLGVKEGHH  122 (126)
T ss_dssp             SSEEEEECTTCCEEEEEESCCCHHHHHHHHHHHCCCCCCC
T ss_pred             eeEEEEECCCCCEEEEecCCCCHHHHHHHHHHHhcccccc
Confidence            9999999855577778899999999999999998766543

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.85  E-value=2.3e-21  Score=145.36  Aligned_cols=102  Identities=15%  Similarity=0.275  Sum_probs=90.9

Q ss_pred             EcChhhHHHHh--cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEe
Q 026412           27 VLTEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFP  104 (239)
Q Consensus        27 ~l~~~~f~~~~--~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~  104 (239)
                      ..+.++|++.+  .++++++|+|||+||++|+.+.|.++++++.++  +.+.++.||++++++++++|+|.++||+++++
T Consensus         8 i~~~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~--~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~   85 (149)
T 3gix_A            8 LTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLS--KMAAIYLVDVDQTAVYTQYFDISYIPSTVFFF   85 (149)
T ss_dssp             ECSHHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTT--TTEEEEEEETTTCCHHHHHTTCCSSSEEEEEE
T ss_pred             cCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcc--CceEEEEEECCcCHHHHHHcCCCccCeEEEEE
Confidence            45688999998  568999999999999999999999999999885  34999999999999999999999999999888


Q ss_pred             CCCcCc---------cccCC-CCCHHHHHHHHHHhhC
Q 026412          105 KGNKDG---------EEYGG-GRDLEDFVSFINEKCG  131 (239)
Q Consensus       105 ~g~~~~---------~~~~g-~~~~~~l~~~l~~~~~  131 (239)
                      +| +..         .++.| ..+.+++.++|+....
T Consensus        86 ~G-~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~  121 (149)
T 3gix_A           86 NG-QHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYR  121 (149)
T ss_dssp             TT-EEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHH
T ss_pred             CC-eEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHH
Confidence            77 555         67888 8999999999988754

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.85  E-value=6.8e-21  Score=152.01  Aligned_cols=113  Identities=32%  Similarity=0.653  Sum_probs=101.2

Q ss_pred             hcCCCcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCC
Q 026412           20 ALADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP   98 (239)
Q Consensus        20 ~~~~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P   98 (239)
                      +....+..+++++|++.+ .++++++|.||++||++|+.+.|.|+++++.++  +.+.++.||++.+++++++|+|.++|
T Consensus         9 ~~~~~~~~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~~~~l~~~~~v~~~P   86 (222)
T 3dxb_A            9 PMSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNPGTAPKYGIRGIP   86 (222)
T ss_dssp             CCSCCCEECCTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTCEEEEEETTTCTTTGGGGTCCSBS
T ss_pred             CCCCCceeCCHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhc--CCcEEEEEECCCCHHHHHHcCCCcCC
Confidence            345678999999999865 789999999999999999999999999999986  35999999999999999999999999


Q ss_pred             eEEEEeCCCcCccccCCCCCHHHHHHHHHHhhCCCCC
Q 026412           99 TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRD  135 (239)
Q Consensus        99 t~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~  135 (239)
                      |+++|++| +...++.|..+.+.+.+||++.+.....
T Consensus        87 t~~~~~~G-~~~~~~~G~~~~~~l~~~l~~~l~~~~~  122 (222)
T 3dxb_A           87 TLLLFKNG-EVAATKVGALSKGQLKEFLDANLAGSAM  122 (222)
T ss_dssp             EEEEEETT-EEEEEEESCCCHHHHHHHHHHHSCCSCC
T ss_pred             EEEEEECC-eEEEEeccccChHHHHHHHHhhcccccc
Confidence            99999876 6667899999999999999999875443

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.85  E-value=8.7e-21  Score=142.76  Aligned_cols=110  Identities=20%  Similarity=0.416  Sum_probs=95.0

Q ss_pred             cCCCcEEcC-hhhHHHHhcC--CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCC
Q 026412           21 LADDVVVLT-EDNFEKEVGQ--DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGF   97 (239)
Q Consensus        21 ~~~~v~~l~-~~~f~~~~~~--~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~   97 (239)
                      ....+..++ .++|++.+.+  +++++|.||++||++|+.+.|.++++++.++   ++.++.||++++++++++|+|.++
T Consensus        10 ~~~~v~~l~~~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~~~~~~l~~~~~v~~~   86 (153)
T 2wz9_A           10 AVAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP---QVSFVKLEAEGVPEVSEKYEISSV   86 (153)
T ss_dssp             --CCSEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSHHHHHHTTCCSS
T ss_pred             ccCCeEEcCCHHHHHHHHHhcCCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC---CeEEEEEECCCCHHHHHHcCCCCC
Confidence            345677776 6999999955  8999999999999999999999999999973   799999999999999999999999


Q ss_pred             CeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhCCCCC
Q 026412           98 PTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRD  135 (239)
Q Consensus        98 Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~  135 (239)
                      ||+++|++| +...++.| .+.+++.+||++.++....
T Consensus        87 Pt~~~~~~G-~~~~~~~G-~~~~~l~~~i~~~l~~~~~  122 (153)
T 2wz9_A           87 PTFLFFKNS-QKIDRLDG-AHAPELTKKVQRHASSGSF  122 (153)
T ss_dssp             SEEEEEETT-EEEEEEES-SCHHHHHHHHHHHSCTTSS
T ss_pred             CEEEEEECC-EEEEEEeC-CCHHHHHHHHHHHhccccC
Confidence            999999955 66667777 4788999999999876543

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.85  E-value=8.9e-21  Score=133.17  Aligned_cols=101  Identities=28%  Similarity=0.666  Sum_probs=90.0

Q ss_pred             cEEcCh-hhHHHHhc--CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE
Q 026412           25 VVVLTE-DNFEKEVG--QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  101 (239)
Q Consensus        25 v~~l~~-~~f~~~~~--~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  101 (239)
                      +..+++ ++|++.+.  ++++++|.||++||++|+.+.|.++++++.+.  +++.++.||++++++++++|++.++||++
T Consensus         2 v~~l~~~~~~~~~l~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~   79 (106)
T 1xwb_A            2 VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFA--DNVVVLKVDVDECEDIAMEYNISSMPTFV   79 (106)
T ss_dssp             EEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTEEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             ceecCCHHHHHHHHHhcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhC--CCeEEEEEeccchHHHHHHcCCCcccEEE
Confidence            456677 89999985  78999999999999999999999999999985  47999999999999999999999999999


Q ss_pred             EEeCCCcCccccCCCCCHHHHHHHHHHh
Q 026412          102 FFPKGNKDGEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus       102 ~~~~g~~~~~~~~g~~~~~~l~~~l~~~  129 (239)
                      ++++| +...++.| .+.+.+.++|++.
T Consensus        80 ~~~~G-~~~~~~~g-~~~~~l~~~i~~~  105 (106)
T 1xwb_A           80 FLKNG-VKVEEFAG-ANAKRLEDVIKAN  105 (106)
T ss_dssp             EEETT-EEEEEEES-CCHHHHHHHHHHT
T ss_pred             EEcCC-cEEEEEcC-CCHHHHHHHHHHh
Confidence            99776 56677888 7899999999864

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.85  E-value=2.9e-21  Score=137.30  Aligned_cols=103  Identities=22%  Similarity=0.370  Sum_probs=90.1

Q ss_pred             cEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEe
Q 026412           25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFP  104 (239)
Q Consensus        25 v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~  104 (239)
                      +..++.++| +.+.++++++|.||++||++|+.+.|.++++++.++   ++.++.||++.+++++++|+|.++||+++|+
T Consensus         5 ~~~~~~~~f-~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~---~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~   80 (110)
T 2l6c_A            5 RDITTEAGM-AHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP---QVAISSVDSEARPELMKELGFERVPTLVFIR   80 (110)
T ss_dssp             SBCGGGCSH-HHHTTCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT---TSCEEEEEGGGCHHHHHHTTCCSSCEEEEEE
T ss_pred             eecCCHHHH-HHHHcCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC---CcEEEEEcCcCCHHHHHHcCCcccCEEEEEE
Confidence            456778999 677778999999999999999999999999998874   6899999999999999999999999999996


Q ss_pred             CCCcCccccCCCCCHHHHHHHHHHhhCC
Q 026412          105 KGNKDGEEYGGGRDLEDFVSFINEKCGT  132 (239)
Q Consensus       105 ~g~~~~~~~~g~~~~~~l~~~l~~~~~~  132 (239)
                      +| +...++.|..+.+++.+++....++
T Consensus        81 ~G-~~v~~~~G~~~~~~l~~~~~~~~~~  107 (110)
T 2l6c_A           81 DG-KVAKVFSGIMNPRELQALYASIHHH  107 (110)
T ss_dssp             SS-SEEEEEESCCCHHHHHHHHHTC---
T ss_pred             CC-EEEEEEcCCCCHHHHHHHHHHHhhh
Confidence            66 6677889999999999999886554

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.85  E-value=1.1e-21  Score=142.50  Aligned_cols=105  Identities=33%  Similarity=0.696  Sum_probs=89.5

Q ss_pred             CCcEEcChhhHHHHh-cCCCcEEEEEECCCCh--------------HHhhHhHHHHHHHHHccCCCCeEEEEEeCccchh
Q 026412           23 DDVVVLTEDNFEKEV-GQDRGALVEFYAPWCG--------------HCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD   87 (239)
Q Consensus        23 ~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~--------------~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~   87 (239)
                      ..+..+++++|++.+ .++++++|.||++||+              +|+.+.|.++++++.++  +++.++.||++++++
T Consensus         3 ~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~--~~~~~~~vd~d~~~~   80 (123)
T 1oaz_A            3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNPG   80 (123)
T ss_dssp             CSCEECCSTTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC---------CEEEEEETTSCTT
T ss_pred             CccEecChhhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhc--CCeEEEEEECCCCHH
Confidence            467899999999766 7899999999999999              99999999999998875  369999999999999


Q ss_pred             HHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412           88 LAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus        88 l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      ++++|+|.++||+++|++| +...++.|..+.+++.+||++.+
T Consensus        81 l~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~~~~~l~~~l~~~l  122 (123)
T 1oaz_A           81 TAPKYGIRGIPTLLLFKNG-EVAATKVGALSKGQLKEFLDANL  122 (123)
T ss_dssp             TGGGGTCCBSSEEEEEESS-SEEEEEESCCCHHHHHHHHTTTC
T ss_pred             HHHHcCCCccCEEEEEECC-EEEEEEeCCCCHHHHHHHHHHHh
Confidence            9999999999999999666 66678899999999999998754

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.85  E-value=3.6e-21  Score=141.87  Aligned_cols=105  Identities=21%  Similarity=0.310  Sum_probs=93.8

Q ss_pred             CCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeC---------ccchhHHHHc
Q 026412           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA---------DKYKDLAEKY   92 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~---------~~~~~l~~~~   92 (239)
                      ...+..++.++|++.+.+  +++|+||++||++|+.+.|.+.++++.++    +.++.||+         +.+++++++|
T Consensus        15 ~~~v~~l~~~~~~~~~~~--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----v~~~~vd~~~~~~~~~~d~~~~l~~~~   88 (135)
T 3emx_A           15 DGRLIYITPEEFRQLLQG--DAILAVYSKTCPHCHRDWPQLIQASKEVD----VPIVMFIWGSLIGERELSAARLEMNKA   88 (135)
T ss_dssp             TTEEEECCHHHHHHHHTS--SEEEEEEETTCHHHHHHHHHHHHHHTTCC----SCEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred             cCceeecCHHHHHHHhCC--cEEEEEECCcCHhhhHhChhHHHHHHHCC----CEEEEEECCCchhhhhhhhhHHHHHHc
Confidence            567889999999999965  99999999999999999999999998874    88999999         8889999999


Q ss_pred             CCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhCCC
Q 026412           93 GVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS  133 (239)
Q Consensus        93 ~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~  133 (239)
                      +|.++||+++|++| +...++.|..+.+.+.+++++..+.+
T Consensus        89 ~v~~~Pt~~~~~~G-~~v~~~~G~~~~~~~~~~i~~~~~~~  128 (135)
T 3emx_A           89 GVEGTPTLVFYKEG-RIVDKLVGATPWSLKVEKAREIYGGE  128 (135)
T ss_dssp             TCCSSSEEEEEETT-EEEEEEESCCCHHHHHHHHHHHC---
T ss_pred             CCceeCeEEEEcCC-EEEEEEeCCCCHHHHHHHHHHHhCCC
Confidence            99999999999966 67788999999999999999987654

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.85  E-value=9e-21  Score=135.99  Aligned_cols=100  Identities=25%  Similarity=0.624  Sum_probs=89.7

Q ss_pred             CcEEcCh-hhHHHHhc--CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeE
Q 026412           24 DVVVLTE-DNFEKEVG--QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL  100 (239)
Q Consensus        24 ~v~~l~~-~~f~~~~~--~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  100 (239)
                      .+..+++ ++|++.+.  ++++++|.||++||++|+.+.|.++++++.+    ++.++.||++.+++++++|+|.++||+
T Consensus        14 ~v~~l~~~~~~~~~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~----~~~~~~vd~~~~~~~~~~~~v~~~Pt~   89 (117)
T 2xc2_A           14 ELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY----DAIFVKVDVDKLEETARKYNISAMPTF   89 (117)
T ss_dssp             EEEECCSTTHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS----SSEEEEEETTTSHHHHHHTTCCSSSEE
T ss_pred             eeEEeCCHHHHHHHHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc----CcEEEEEECCccHHHHHHcCCCccceE
Confidence            3778887 99999985  7899999999999999999999999998876    699999999999999999999999999


Q ss_pred             EEEeCCCcCccccCCCCCHHHHHHHHHHh
Q 026412          101 KFFPKGNKDGEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus       101 ~~~~~g~~~~~~~~g~~~~~~l~~~l~~~  129 (239)
                      +++++| +...++.| .+.+++.++|++.
T Consensus        90 ~~~~~G-~~~~~~~G-~~~~~l~~~l~~~  116 (117)
T 2xc2_A           90 IAIKNG-EKVGDVVG-ASIAKVEDMIKKF  116 (117)
T ss_dssp             EEEETT-EEEEEEES-SCHHHHHHHHHHH
T ss_pred             EEEeCC-cEEEEEeC-CCHHHHHHHHHHh
Confidence            999766 66677888 6899999999865

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.85  E-value=1.7e-20  Score=150.89  Aligned_cols=111  Identities=40%  Similarity=0.759  Sum_probs=100.1

Q ss_pred             CCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCC-CCeEEEEEeCccchhHHHHcCCCCCCeE
Q 026412           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFPTL  100 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~-~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  100 (239)
                      .+.+..+++++|++.+.++++++|+||++||++|+.+.|.|.++++.++.. .++.++.||++.+++++++|+|+++||+
T Consensus        14 ~~~v~~l~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~   93 (241)
T 3idv_A           14 ENGVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTI   93 (241)
T ss_dssp             ETTEEEECTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CCCcEEecccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHHHHHhcCCCcCCEE
Confidence            467899999999999988999999999999999999999999999998643 3499999999999999999999999999


Q ss_pred             EEEeCCCcCccccCCCCCHHHHHHHHHHhhCCCC
Q 026412          101 KFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSR  134 (239)
Q Consensus       101 ~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~  134 (239)
                      ++|++|+  ..+|.|.++.+++.+|+.+..++..
T Consensus        94 ~~~~~g~--~~~~~g~~~~~~l~~~i~~~~~~~~  125 (241)
T 3idv_A           94 KILKKGQ--AVDYEGSRTQEEIVAKVREVSQPDW  125 (241)
T ss_dssp             EEEETTE--EEECCSCSCHHHHHHHHHHHHSTTC
T ss_pred             EEEcCCC--cccccCcccHHHHHHHHhhccCccc
Confidence            9998773  3469999999999999999887643

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.85  E-value=1.6e-20  Score=131.40  Aligned_cols=99  Identities=32%  Similarity=0.665  Sum_probs=88.2

Q ss_pred             EEcCh-hhHHHHhc--CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEE
Q 026412           26 VVLTE-DNFEKEVG--QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF  102 (239)
Q Consensus        26 ~~l~~-~~f~~~~~--~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~  102 (239)
                      ..+++ ++|++.+.  ++++++|.||++||++|+.+.|.+.++++.++   ++.++.+|++.+++++++|++.++||+++
T Consensus         2 ~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~   78 (104)
T 2vim_A            2 RVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP---EVEFAKVDVDQNEEAAAKYSVTAMPTFVF   78 (104)
T ss_dssp             EECCSHHHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             eecCCHHHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC---CCEEEEEeccCCHHHHHHcCCccccEEEE
Confidence            45555 89999985  78999999999999999999999999999875   69999999999999999999999999999


Q ss_pred             EeCCCcCccccCCCCCHHHHHHHHHHh
Q 026412          103 FPKGNKDGEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus       103 ~~~g~~~~~~~~g~~~~~~l~~~l~~~  129 (239)
                      +++| +...++.| .+.+++.+||++.
T Consensus        79 ~~~g-~~~~~~~G-~~~~~l~~~l~~~  103 (104)
T 2vim_A           79 IKDG-KEVDRFSG-ANETKLRETITRH  103 (104)
T ss_dssp             EETT-EEEEEEES-SCHHHHHHHHHHH
T ss_pred             EeCC-cEEEEEeC-CCHHHHHHHHHhh
Confidence            9866 56677888 6899999999875

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.84  E-value=3e-21  Score=140.86  Aligned_cols=100  Identities=17%  Similarity=0.316  Sum_probs=88.2

Q ss_pred             EEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeC
Q 026412           26 VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPK  105 (239)
Q Consensus        26 ~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~  105 (239)
                      ..++.+.++....++++++|.||++||++|+.+.|.++++++.++  +++.++.||++.+++++++|+|.++||+++|++
T Consensus        28 ~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~--~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~  105 (128)
T 3ul3_B           28 QQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYG--KRIYLLKVDLDKNESLARKFSVKSLPTIILLKN  105 (128)
T ss_dssp             CCCCCSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHG--GGEEEEEEEGGGCHHHHHHTTCCSSSEEEEEET
T ss_pred             ccCCccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhc--CCeEEEEEECCCCHHHHHHcCCCCcCEEEEEEC
Confidence            344455566666789999999999999999999999999999986  479999999999999999999999999999976


Q ss_pred             CCcCccccCCCCCHHHHHHHHHH
Q 026412          106 GNKDGEEYGGGRDLEDFVSFINE  128 (239)
Q Consensus       106 g~~~~~~~~g~~~~~~l~~~l~~  128 (239)
                      | +...++.|..+.+++.+||++
T Consensus       106 G-~~~~~~~G~~~~~~l~~~l~~  127 (128)
T 3ul3_B          106 K-TMLARKDHFVSSNDLIALIKK  127 (128)
T ss_dssp             T-EEEEEESSCCCHHHHHHHHTT
T ss_pred             C-EEEEEecCCCCHHHHHHHHHh
Confidence            5 677889999999999999865

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.84  E-value=1.7e-20  Score=138.96  Aligned_cols=106  Identities=29%  Similarity=0.526  Sum_probs=81.1

Q ss_pred             CCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEE
Q 026412           23 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF  102 (239)
Q Consensus        23 ~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~  102 (239)
                      ..+..+++++|.+.+..++.++|.||++||++|+.+.|.++++++.++  +++.++.||++.+++++++|+|.++||+++
T Consensus        33 ~~v~~l~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~--~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~  110 (140)
T 1v98_A           33 PWVVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHA--GRLKVVKVNVDEHPGLAARYGVRSVPTLVL  110 (140)
T ss_dssp             ----------------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTEEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             CccccCCHHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHcc--CceEEEEEECCCCHHHHHHCCCCccCEEEE
Confidence            567889999999998444449999999999999999999999999986  369999999999999999999999999999


Q ss_pred             EeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412          103 FPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus       103 ~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      |++| +....+.|..+.+.+.+||++.++
T Consensus       111 ~~~G-~~~~~~~G~~~~~~l~~~i~~~l~  138 (140)
T 1v98_A          111 FRRG-APVATWVGASPRRVLEERLRPYLE  138 (140)
T ss_dssp             EETT-EEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             EeCC-cEEEEEeCCCCHHHHHHHHHHHHc
Confidence            9766 666788999999999999998764

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.84  E-value=2.2e-20  Score=135.69  Aligned_cols=104  Identities=24%  Similarity=0.541  Sum_probs=91.5

Q ss_pred             CCCcEEc-ChhhHHHHhc----CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCC
Q 026412           22 ADDVVVL-TEDNFEKEVG----QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG   96 (239)
Q Consensus        22 ~~~v~~l-~~~~f~~~~~----~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~   96 (239)
                      ...+..+ +.++|++.+.    ++++++|.||++||++|+.+.|.++++++.++   ++.++.||++++++++++|+|.+
T Consensus        15 ~~~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~---~v~~~~vd~d~~~~l~~~~~v~~   91 (124)
T 1xfl_A           15 EGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP---NVLFLKVDTDELKSVASDWAIQA   91 (124)
T ss_dssp             CSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS---SEEEEEEETTTSHHHHHHTTCCS
T ss_pred             CCcEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC---CcEEEEEECccCHHHHHHcCCCc
Confidence            4556776 7799999883    58999999999999999999999999999985   69999999999999999999999


Q ss_pred             CCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412           97 FPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus        97 ~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      +||+++|++| +...++.| .+.+++.++|++.+
T Consensus        92 ~Pt~~~~~~G-~~~~~~~G-~~~~~l~~~l~~~l  123 (124)
T 1xfl_A           92 MPTFMFLKEG-KILDKVVG-AKKDELQSTIAKHL  123 (124)
T ss_dssp             SSEEEEEETT-EEEEEEES-CCHHHHHHHHHHHC
T ss_pred             cCEEEEEECC-EEEEEEeC-CCHHHHHHHHHHhc
Confidence            9999999766 66667788 48999999998764

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.84  E-value=6.7e-21  Score=136.92  Aligned_cols=103  Identities=16%  Similarity=0.260  Sum_probs=87.0

Q ss_pred             CCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeC----ccchhHHHHcCCCCC
Q 026412           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA----DKYKDLAEKYGVSGF   97 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~----~~~~~l~~~~~i~~~   97 (239)
                      ...+..++.++|.+.+.++++++|.||++||++|+.+.|.+.++++.+.  ..+.++.++.    +.+++++++|+|.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~i~~~   88 (118)
T 1zma_A           11 IKDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETK--AHIYFINSEEPSQLNDLQAFRSRYGIPTV   88 (118)
T ss_dssp             TTTSEECCHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHC--CCCEEEETTCGGGHHHHHHHHHHHTCCSS
T ss_pred             HhhhhcCCHHHHHHHHhCCCeEEEEEECCCCccHHHHHHHHHHHHHhcC--CeEEEEECCCcCcHHHHHHHHHHcCCCCC
Confidence            4567889999999999888999999999999999999999999999875  3455553332    334688999999999


Q ss_pred             CeEEEEeCCCcCccccCCCCCHHHHHHHHH
Q 026412           98 PTLKFFPKGNKDGEEYGGGRDLEDFVSFIN  127 (239)
Q Consensus        98 Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~  127 (239)
                      ||+++|++| +...++.|..+.+++.+||+
T Consensus        89 Pt~~~~~~G-~~~~~~~G~~~~~~l~~~l~  117 (118)
T 1zma_A           89 PGFVHITDG-QINVRCDSSMSAQEIKDFAG  117 (118)
T ss_dssp             CEEEEEETT-EEEEECCTTCCHHHHHHHHT
T ss_pred             CeEEEEECC-EEEEEecCCCCHHHHHHHhh
Confidence            999999876 56678899999999999985

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.84  E-value=3.7e-20  Score=149.72  Aligned_cols=112  Identities=26%  Similarity=0.550  Sum_probs=97.0

Q ss_pred             CCCcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccC-CCCeEEEEEeC--ccchhHHHHcCCCCC
Q 026412           22 ADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTL-EDDVVVANLDA--DKYKDLAEKYGVSGF   97 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~-~~~v~~~~vd~--~~~~~l~~~~~i~~~   97 (239)
                      ...+..+++++|++.+ .++++++|.|||+||++|+++.|.|+++++.++. +..+.++.|||  +.++++|++|+|.++
T Consensus        11 ~~~v~~l~~~~f~~~i~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~~~   90 (244)
T 3q6o_A           11 SDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGF   90 (244)
T ss_dssp             TSSSEEECTTTHHHHHSSCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCCSS
T ss_pred             CCCceeCChhhHHHHHhhCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCCcc
Confidence            5678999999999988 6679999999999999999999999999999874 23699999999  678999999999999


Q ss_pred             CeEEEEeCCCcC----ccccCCCCCHHHHHHHHHHhhCCCC
Q 026412           98 PTLKFFPKGNKD----GEEYGGGRDLEDFVSFINEKCGTSR  134 (239)
Q Consensus        98 Pt~~~~~~g~~~----~~~~~g~~~~~~l~~~l~~~~~~~~  134 (239)
                      ||+++|++|++.    ...+.| ++.+.+.++|.+.++...
T Consensus        91 Pt~~~~~~g~~~~~g~~~~~~g-~~~~~l~~~i~~~l~~~~  130 (244)
T 3q6o_A           91 PTVRFFXAFTXNGSGAVFPVAG-ADVQTLRERLIDALESHH  130 (244)
T ss_dssp             SEEEEECTTCCSSSCEECCCTT-CCHHHHHHHHHHHHHTCT
T ss_pred             CEEEEEeCCCcCCCCeeEecCC-CCHHHHHHHHHHHHHhcc
Confidence            999999976432    225556 799999999999887655

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.84  E-value=1.6e-20  Score=134.36  Aligned_cols=96  Identities=26%  Similarity=0.480  Sum_probs=85.8

Q ss_pred             cChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCC
Q 026412           28 LTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN  107 (239)
Q Consensus        28 l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~  107 (239)
                      .+.++|++++.++++++|.||++||++|+.+.|.++++++.++   ++.++.||++++++++++|+|.++||++++++| 
T Consensus        18 ~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~---~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G-   93 (114)
T 2oe3_A           18 TNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYP---DVRFVKCDVDESPDIAKECEVTAMPTFVLGKDG-   93 (114)
T ss_dssp             CSHHHHHHHHHHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCT---TSEEEEEETTTCHHHHHHTTCCSBSEEEEEETT-
T ss_pred             CCHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC---CCEEEEEECCCCHHHHHHCCCCcccEEEEEeCC-
Confidence            4457788888888999999999999999999999999999986   399999999999999999999999999999766 


Q ss_pred             cCccccCCCCCHHHHHHHHHH
Q 026412          108 KDGEEYGGGRDLEDFVSFINE  128 (239)
Q Consensus       108 ~~~~~~~g~~~~~~l~~~l~~  128 (239)
                      +...++.|.. .+.+.++|++
T Consensus        94 ~~~~~~~G~~-~~~l~~~l~~  113 (114)
T 2oe3_A           94 QLIGKIIGAN-PTALEKGIKD  113 (114)
T ss_dssp             EEEEEEESSC-HHHHHHHHHT
T ss_pred             eEEEEEeCCC-HHHHHHHHHh
Confidence            6667788988 9999999874

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.84  E-value=3.8e-20  Score=132.54  Aligned_cols=107  Identities=27%  Similarity=0.591  Sum_probs=92.5

Q ss_pred             CCCcEEc-ChhhHHHHhc----CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCC
Q 026412           22 ADDVVVL-TEDNFEKEVG----QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG   96 (239)
Q Consensus        22 ~~~v~~l-~~~~f~~~~~----~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~   96 (239)
                      ...+..+ +.++|++.+.    ++++++|.||++||++|+.+.|.++++++.++   ++.++.||++.+++++++|++.+
T Consensus         5 ~~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~~~~~~~~v~~   81 (118)
T 2vm1_A            5 EGAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP---GAIFLKVDVDELKDVAEAYNVEA   81 (118)
T ss_dssp             CCCEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSHHHHHHTTCCS
T ss_pred             CCceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC---CcEEEEEEcccCHHHHHHcCCCc
Confidence            4566777 5799999884    38999999999999999999999999999985   69999999999999999999999


Q ss_pred             CCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhCCC
Q 026412           97 FPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS  133 (239)
Q Consensus        97 ~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~  133 (239)
                      +|++++|++| +...++.| .+.+++.++|.+.++..
T Consensus        82 ~Pt~~~~~~g-~~~~~~~g-~~~~~l~~~l~~~~~~~  116 (118)
T 2vm1_A           82 MPTFLFIKDG-EKVDSVVG-GRKDDIHTKIVALMGSA  116 (118)
T ss_dssp             BSEEEEEETT-EEEEEEES-CCHHHHHHHHHHHHC--
T ss_pred             CcEEEEEeCC-eEEEEecC-CCHHHHHHHHHHHhccc
Confidence            9999999766 55667778 58999999999987643

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.84  E-value=2.6e-20  Score=149.75  Aligned_cols=110  Identities=44%  Similarity=0.824  Sum_probs=99.0

Q ss_pred             CCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCC-CCeEEEEEeCccchhHHHHcCCCCCCeE
Q 026412           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFPTL  100 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~-~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  100 (239)
                      ...+..++.++|++.+..+++++|.||++||++|+.+.|.|.++++.+... +++.++.||++.+++++++|+|.++||+
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~  208 (241)
T 3idv_A          129 PEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTL  208 (241)
T ss_dssp             CCSSEECCTTTHHHHHHHCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             cccceeccHHHHHHhhccCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCHHHHHHcCCcccCEE
Confidence            346888999999999988899999999999999999999999999988642 4699999999999999999999999999


Q ss_pred             EEEeCCCcCccccCCCCCHHHHHHHHHHhhCCC
Q 026412          101 KFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS  133 (239)
Q Consensus       101 ~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~  133 (239)
                      ++|++| + ...|.|.++.+++.+||++++++.
T Consensus       209 ~~~~~g-~-~~~~~g~~~~~~l~~~l~~~~~~~  239 (241)
T 3idv_A          209 KIFRKG-R-PYDYNGPREKYGIVDYMIEQSGAA  239 (241)
T ss_dssp             EEEETT-E-EEECCSCCSHHHHHHHHHHHTTCT
T ss_pred             EEEECC-e-EEEecCCCCHHHHHHHHHhhhCCC
Confidence            999987 3 345999999999999999998764

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=1.2e-21  Score=144.59  Aligned_cols=104  Identities=23%  Similarity=0.487  Sum_probs=88.9

Q ss_pred             cCCCcEEcChhhHHHHhc--CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCC---
Q 026412           21 LADDVVVLTEDNFEKEVG--QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS---   95 (239)
Q Consensus        21 ~~~~v~~l~~~~f~~~~~--~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~---   95 (239)
                      .+..+..++.++|++.+.  ++++++|.||++||++|+.+.|.|+++++.+.. +++.++.||++++++++++|+|.   
T Consensus         5 ~~~~v~~l~~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~-~~v~~~~vd~~~~~~~~~~~~v~~~~   83 (137)
T 2dj0_A            5 SSGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNC-TGLNFGKVDVGRYTDVSTRYKVSTSP   83 (137)
T ss_dssp             CCSCCEECCTTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCS-SSCEEEECCTTTCHHHHHHTTCCCCS
T ss_pred             CCceEEEccHhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCeEEEEEeCccCHHHHHHccCcccC
Confidence            356789999999999983  345999999999999999999999999999862 36999999999999999999999   


Q ss_pred             ---CCCeEEEEeCCCcCccccCCCCCHHHHHHHH
Q 026412           96 ---GFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI  126 (239)
Q Consensus        96 ---~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l  126 (239)
                         ++||+++|++| +...++.|..+.+.+.+|+
T Consensus        84 ~~~~~Pt~~~~~~G-~~~~~~~G~~~~~~l~~~l  116 (137)
T 2dj0_A           84 LTKQLPTLILFQGG-KEAMRRPQIDKKGRAVSWT  116 (137)
T ss_dssp             SSSCSSEEEEESSS-SEEEEESCBCSSSCBCCCC
T ss_pred             CcCCCCEEEEEECC-EEEEEecCcCchHHHHHHH
Confidence               99999999766 5667788877666665555

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.83  E-value=7.7e-21  Score=141.27  Aligned_cols=106  Identities=11%  Similarity=0.187  Sum_probs=80.8

Q ss_pred             CcEEcChhhHHHHhcCCCcEEEEEECCC--ChHHhhHhHHHHHHHHHccCCCCeE--EEEEeCccchhHHHHcCCCCCCe
Q 026412           24 DVVVLTEDNFEKEVGQDRGALVEFYAPW--CGHCKNLAPTYEKVAAAFTLEDDVV--VANLDADKYKDLAEKYGVSGFPT   99 (239)
Q Consensus        24 ~v~~l~~~~f~~~~~~~k~vlV~F~a~w--C~~C~~~~~~~~~~a~~~~~~~~v~--~~~vd~~~~~~l~~~~~i~~~Pt   99 (239)
                      .+..+++++|++.+.+++.++|.||++|  |++|+.+.|.|+++++.+   +++.  ++.||++++++++++|+|.++||
T Consensus        18 ~~~~l~~~~f~~~i~~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~---~~v~~~~~~Vd~d~~~~la~~~~V~~iPT   94 (142)
T 2es7_A           18 GWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREF---PQFDWQVAVADLEQSEAIGDRFNVRRFPA   94 (142)
T ss_dssp             TCEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTC---TTSCCEEEEECHHHHHHHHHTTTCCSSSE
T ss_pred             cCcccccccHHHHHHhCCCEEEEEECCCCCCccHHHHHHHHHHHHHHh---cccceeEEEEECCCCHHHHHhcCCCcCCe
Confidence            7889999999999977778999999887  999999999999999998   3577  99999999999999999999999


Q ss_pred             EEEEeCCCcCccccCCCCCHHHHHHHHHHhhCCC
Q 026412          100 LKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS  133 (239)
Q Consensus       100 ~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~  133 (239)
                      +++|++| +...++.|.++.+++.+||++.++..
T Consensus        95 ~~~fk~G-~~v~~~~G~~~~~~l~~~i~~~l~~~  127 (142)
T 2es7_A           95 TLVFTDG-KLRGALSGIHPWAELLTLMRSIVDTP  127 (142)
T ss_dssp             EEEESCC-----CEESCCCHHHHHHHHHHHHC--
T ss_pred             EEEEeCC-EEEEEEeCCCCHHHHHHHHHHHhccc
Confidence            9999665 67788999999999999999987643

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.83  E-value=2.2e-20  Score=159.31  Aligned_cols=107  Identities=38%  Similarity=0.805  Sum_probs=97.0

Q ss_pred             CCcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE
Q 026412           23 DDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  101 (239)
Q Consensus        23 ~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  101 (239)
                      ..+..+++++|++.+ .++++++|.||||||+||+++.|.|.++++.++.+.++.++.||++.+.  +++|+|.++||++
T Consensus       249 ~~v~~l~~~~f~~~~~~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~--~~~~~v~~~Pt~~  326 (361)
T 3uem_A          249 QPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE--VEAVKVHSFPTLK  326 (361)
T ss_dssp             SSSEEECTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCB--CSSCCCCSSSEEE
T ss_pred             CCcEEeecCchhhhcccCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccc--hhhcCCcccCeEE
Confidence            458889999999998 6899999999999999999999999999999987668999999999876  7899999999999


Q ss_pred             EEeCC-CcCccccCCCCCHHHHHHHHHHhhC
Q 026412          102 FFPKG-NKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus       102 ~~~~g-~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      +|++| ++.+.+|.|.++.+.|.+||+++.+
T Consensus       327 ~~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~  357 (361)
T 3uem_A          327 FFPASADRTVIDYNGERTLDGFKKFLESGGQ  357 (361)
T ss_dssp             EECSSSSCCCEECCSCSSHHHHHHHHTTTSC
T ss_pred             EEECCCCcceeEecCCCCHHHHHHHHHhcCC
Confidence            99766 4578899999999999999987654

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.83  E-value=2.3e-20  Score=134.22  Aligned_cols=99  Identities=14%  Similarity=0.262  Sum_probs=84.1

Q ss_pred             CCcEEcChhhHHHHh-cCCC--cEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCe
Q 026412           23 DDVVVLTEDNFEKEV-GQDR--GALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT   99 (239)
Q Consensus        23 ~~v~~l~~~~f~~~~-~~~k--~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt   99 (239)
                      ..+.+++.++|.+.+ ..++  +++|.|||+||++|+.+.|.++++++.++   ++.|++||+++.   +++|+|.++||
T Consensus         3 G~v~~it~~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~---~v~f~kvd~d~~---~~~~~v~~~PT   76 (118)
T 3evi_A            3 GELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFP---ETKFVKAIVNSC---IQHYHDNCLPT   76 (118)
T ss_dssp             CSCEECCGGGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCT---TSEEEEEEGGGT---STTCCGGGCSE
T ss_pred             cceEEeCHHHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC---CCEEEEEEhHHh---HHHCCCCCCCE
Confidence            357788999999988 3344  89999999999999999999999999985   699999999975   58999999999


Q ss_pred             EEEEeCCCcCccccCCC-------CCHHHHHHHHHH
Q 026412          100 LKFFPKGNKDGEEYGGG-------RDLEDFVSFINE  128 (239)
Q Consensus       100 ~~~~~~g~~~~~~~~g~-------~~~~~l~~~l~~  128 (239)
                      +++|++| +...++.|.       .+.+++..+|.+
T Consensus        77 ~~~fk~G-~~v~~~~G~~~~gg~~~~~~~le~~L~~  111 (118)
T 3evi_A           77 IFVYKNG-QIEAKFIGIIECGGINLKLEELEWKLAE  111 (118)
T ss_dssp             EEEEETT-EEEEEEESTTTTTCSSCCHHHHHHHHHT
T ss_pred             EEEEECC-EEEEEEeChhhhCCCCCCHHHHHHHHHH
Confidence            9999988 555666554       478888888865

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.82  E-value=5e-20  Score=133.06  Aligned_cols=104  Identities=28%  Similarity=0.612  Sum_probs=90.7

Q ss_pred             CcEEcC-hhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEE
Q 026412           24 DVVVLT-EDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF  102 (239)
Q Consensus        24 ~v~~l~-~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~  102 (239)
                      .+..++ .++|++.+.++++++|.||++||++|+.+.|.++++++.++.. ++.++.||++.+++++++|+|.++||+++
T Consensus        16 ~~~~i~~~~~f~~~l~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~-~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~   94 (121)
T 2j23_A           16 SVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGD-KVGFYKVDVDEQSQIAQEVGIRAMPTFVF   94 (121)
T ss_dssp             CEEECCSHHHHHHHHSSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHH-HSEEEEEETTTCHHHHHHHTCCSSSEEEE
T ss_pred             ceEEcCCHHHHHHHHcCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCC-cEEEEEEECcCCHHHHHHcCCCcccEEEE
Confidence            445544 4899999988999999999999999999999999999887522 39999999999999999999999999999


Q ss_pred             EeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412          103 FPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus       103 ~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      |++| +...++.|. +.+++.+||++.+
T Consensus        95 ~~~G-~~~~~~~G~-~~~~l~~~l~~~l  120 (121)
T 2j23_A           95 FKNG-QKIDTVVGA-DPSKLQAAITQHS  120 (121)
T ss_dssp             EETT-EEEEEEESS-CHHHHHHHHHHHT
T ss_pred             EECC-eEEeeEcCC-CHHHHHHHHHHhh
Confidence            9866 666778888 9999999998764

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.82  E-value=7.6e-20  Score=131.60  Aligned_cols=106  Identities=28%  Similarity=0.474  Sum_probs=88.4

Q ss_pred             CcEEc--ChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeE
Q 026412           24 DVVVL--TEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL  100 (239)
Q Consensus        24 ~v~~l--~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  100 (239)
                      .+..+  +..+|++.+ .++++++|.||++||++|+.+.|.+.++++.+   +++.++.||++.+++++++|+|.++||+
T Consensus         4 ~v~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~---~~v~~~~vd~~~~~~~~~~~~i~~~Pt~   80 (118)
T 2f51_A            4 PIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN---KDVTFIKVDVDKNGNAADAYGVSSIPAL   80 (118)
T ss_dssp             CSEEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC---TTSEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             cceEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC---CCeEEEEEECCCCHHHHHhcCCCCCCEE
Confidence            45666  678998655 67899999999999999999999999999988   4799999999999999999999999999


Q ss_pred             EEEeCC---CcCccccCCCCCHHHHHHHHHHhhCCC
Q 026412          101 KFFPKG---NKDGEEYGGGRDLEDFVSFINEKCGTS  133 (239)
Q Consensus       101 ~~~~~g---~~~~~~~~g~~~~~~l~~~l~~~~~~~  133 (239)
                      ++|+++   |+...++.|..+ +++.+.+.+...++
T Consensus        81 ~~~~~~~~~G~~~~~~~G~~~-~~l~~~~~~~~~~~  115 (118)
T 2f51_A           81 FFVKKEGNEIKTLDQFVGADV-SRIKADIEKFKHHH  115 (118)
T ss_dssp             EEEEEETTEEEEEEEEESCCH-HHHHHHHHHHC---
T ss_pred             EEEeCCCCcceEEEeecCCCH-HHHHHHHHHhhhcc
Confidence            999871   255667888754 56999998876654

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.82  E-value=1.7e-19  Score=132.84  Aligned_cols=101  Identities=16%  Similarity=0.248  Sum_probs=87.1

Q ss_pred             CCcEEcChhhHHHHhcC---CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCe
Q 026412           23 DDVVVLTEDNFEKEVGQ---DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT   99 (239)
Q Consensus        23 ~~v~~l~~~~f~~~~~~---~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt   99 (239)
                      ..+..++.++|.+.+..   +++++|+||++||++|+.+.|.|+++++.+.   ++.|+.||++++.   ++|+|.++||
T Consensus        10 g~v~~i~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~---~v~~~~vd~~~~~---~~~~i~~~Pt   83 (135)
T 2dbc_A           10 GELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP---ETKFVKAIVNSCI---EHYHDNCLPT   83 (135)
T ss_dssp             CSCEECCHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS---SEEEEEECCSSSC---SSCCSSCCSE
T ss_pred             CceEEcCHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC---CcEEEEEEhhcCc---ccCCCCCCCE
Confidence            56788899999998833   3689999999999999999999999999984   6999999999775   7899999999


Q ss_pred             EEEEeCCCcCccccCCCC-------CHHHHHHHHHHhh
Q 026412          100 LKFFPKGNKDGEEYGGGR-------DLEDFVSFINEKC  130 (239)
Q Consensus       100 ~~~~~~g~~~~~~~~g~~-------~~~~l~~~l~~~~  130 (239)
                      +++|++| +...++.|..       +.+++.++|.+..
T Consensus        84 ~~~~~~G-~~v~~~~G~~~~~~~~~~~~~l~~~l~~~~  120 (135)
T 2dbc_A           84 IFVYKNG-QIEGKFIGIIECGGINLKLEELEWKLSEVG  120 (135)
T ss_dssp             EEEESSS-SCSEEEESTTTTTCTTCCHHHHHHHHHHHT
T ss_pred             EEEEECC-EEEEEEEeEEeeCCCcCCHHHHHHHHHHcC
Confidence            9999866 5666777764       7899999998864

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.82  E-value=8.7e-20  Score=161.24  Aligned_cols=112  Identities=38%  Similarity=0.861  Sum_probs=101.2

Q ss_pred             CCcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE
Q 026412           23 DDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  101 (239)
Q Consensus        23 ~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  101 (239)
                      ..+..++.++|++.+ +++++++|+||||||+||+.+.|.|+++++.++..+++.++.||++.+ +++.+|+|.++||++
T Consensus       352 ~~v~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~-~~~~~~~v~~~Pt~~  430 (481)
T 3f8u_A          352 GPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-DVPSPYEVRGFPTIY  430 (481)
T ss_dssp             SSSEEECTTTHHHHHTCTTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSS-CCCTTCCCCSSSEEE
T ss_pred             CCeEEecccCHHHHhhcCCCcEEEEEecCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCch-hhHhhCCCcccCEEE
Confidence            467889999999998 558999999999999999999999999999998766899999999988 889999999999999


Q ss_pred             EEeCCCc-CccccCCCCCHHHHHHHHHHhhCCCCC
Q 026412          102 FFPKGNK-DGEEYGGGRDLEDFVSFINEKCGTSRD  135 (239)
Q Consensus       102 ~~~~g~~-~~~~~~g~~~~~~l~~~l~~~~~~~~~  135 (239)
                      +|++|+. .+.+|.|.++.+++.+||+++.+....
T Consensus       431 ~~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~~~~~  465 (481)
T 3f8u_A          431 FSPANKKLNPKKYEGGRELSDFISYLQREATNPPV  465 (481)
T ss_dssp             EECTTCTTSCEECCSCCSHHHHHHHHHHHCSSCCC
T ss_pred             EEeCCCeEeeeEeCCCCCHHHHHHHHHHhcCCccc
Confidence            9998875 378999999999999999998765443

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.82  E-value=7e-20  Score=136.16  Aligned_cols=101  Identities=16%  Similarity=0.237  Sum_probs=84.2

Q ss_pred             ChhhHHHHh-c-CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCC
Q 026412           29 TEDNFEKEV-G-QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG  106 (239)
Q Consensus        29 ~~~~f~~~~-~-~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g  106 (239)
                      +.++|++.+ + ++++++|.|||+||++|+.+.|.++++++.+.  +++.++.||++++++++++|+|.++||+++|++|
T Consensus        10 ~~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~G   87 (142)
T 1qgv_A           10 NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVK--NFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRN   87 (142)
T ss_dssp             SHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHT--TTEEEEEEETTTCCTTTTSSCSCSSCEEEEEETT
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhC--CCeEEEEEccccCHHHHHHcCCCCCCEEEEEECC
Confidence            578899877 4 68999999999999999999999999999985  3699999999999999999999999999999887


Q ss_pred             CcCcc--------ccCCCC-CHHHHHHHHHHhhC
Q 026412          107 NKDGE--------EYGGGR-DLEDFVSFINEKCG  131 (239)
Q Consensus       107 ~~~~~--------~~~g~~-~~~~l~~~l~~~~~  131 (239)
                      .....        .+.|.. +.+++.++|++...
T Consensus        88 ~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~  121 (142)
T 1qgv_A           88 KHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYR  121 (142)
T ss_dssp             EEEEEECC------CCSCCSCHHHHHHHHHHHHH
T ss_pred             cEEEEecCCCCcceeeeecCcHHHHHHHHHHHHH
Confidence            43221        344555 38888888877654

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.82  E-value=7.1e-20  Score=130.07  Aligned_cols=103  Identities=27%  Similarity=0.572  Sum_probs=90.1

Q ss_pred             CCcEEc-ChhhHHHHhc----CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCC
Q 026412           23 DDVVVL-TEDNFEKEVG----QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGF   97 (239)
Q Consensus        23 ~~v~~l-~~~~f~~~~~----~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~   97 (239)
                      ..+..+ +.++|++.+.    ++++++|.||++||++|+.+.|.++++++.++   ++.++.||++++++++++|++.++
T Consensus         4 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~v~~~~~~~~~~~~~v~~~   80 (113)
T 1ti3_A            4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP---NVTFLKVDVDELKAVAEEWNVEAM   80 (113)
T ss_dssp             CCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS---SEEEEEEETTTCHHHHHHHHCSST
T ss_pred             CceeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC---CcEEEEEEccccHHHHHhCCCCcc
Confidence            446666 6789999884    48999999999999999999999999999985   699999999999999999999999


Q ss_pred             CeEEEEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412           98 PTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus        98 Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      |+++++++| +...++.| .+.+++.++|++.+
T Consensus        81 Pt~~~~~~G-~~~~~~~g-~~~~~l~~~l~~~~  111 (113)
T 1ti3_A           81 PTFIFLKDG-KLVDKTVG-ADKDGLPTLVAKHA  111 (113)
T ss_dssp             TEEEEEETT-EEEEEEEC-CCTTHHHHHHHHHH
T ss_pred             cEEEEEeCC-EEEEEEec-CCHHHHHHHHHHhh
Confidence            999999766 56667778 58899999998765

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.82  E-value=8.5e-20  Score=134.83  Aligned_cols=105  Identities=19%  Similarity=0.492  Sum_probs=91.7

Q ss_pred             CCcEEc-ChhhHHHHh----cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCC
Q 026412           23 DDVVVL-TEDNFEKEV----GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGF   97 (239)
Q Consensus        23 ~~v~~l-~~~~f~~~~----~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~   97 (239)
                      ..+..+ +.++|++.+    .++++++|.||++||++|+.+.|.++++++.++   ++.++.||++++++++++|+|.++
T Consensus        24 ~~~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~---~v~~~~v~~~~~~~~~~~~~v~~~  100 (139)
T 3d22_A           24 GNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP---SLMFLVIDVDELSDFSASWEIKAT  100 (139)
T ss_dssp             TTCEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSHHHHHHTTCCEE
T ss_pred             CcEEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC---CCEEEEEeCcccHHHHHHcCCCcc
Confidence            445555 579999987    358899999999999999999999999999984   699999999999999999999999


Q ss_pred             CeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhCC
Q 026412           98 PTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGT  132 (239)
Q Consensus        98 Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~  132 (239)
                      ||++++++| +...++.|. +.+++.++|++.++.
T Consensus       101 Pt~~~~~~G-~~~~~~~G~-~~~~l~~~l~~~~~~  133 (139)
T 3d22_A          101 PTFFFLRDG-QQVDKLVGA-NKPELHKKITAILDS  133 (139)
T ss_dssp             SEEEEEETT-EEEEEEESC-CHHHHHHHHHHHHHT
T ss_pred             cEEEEEcCC-eEEEEEeCC-CHHHHHHHHHHHhcc
Confidence            999999666 666778888 899999999987753

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.81  E-value=5.4e-20  Score=135.20  Aligned_cols=105  Identities=15%  Similarity=0.370  Sum_probs=89.3

Q ss_pred             CCCcEEcCh-hhHHHHhcC--CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCC
Q 026412           22 ADDVVVLTE-DNFEKEVGQ--DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP   98 (239)
Q Consensus        22 ~~~v~~l~~-~~f~~~~~~--~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P   98 (239)
                      ...+..+++ ++|++.+..  +++++|.||++||++|+.+.|.++++++.+    ++.++.||++.+++++++|+|.++|
T Consensus        19 ~~~v~~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~----~v~~~~vd~~~~~~l~~~~~v~~~P   94 (133)
T 3cxg_A           19 QSIYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY----YVTLVDIDVDIHPKLNDQHNIKALP   94 (133)
T ss_dssp             TEEEEECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE----ECEEEEEETTTCHHHHHHTTCCSSS
T ss_pred             CccEEEecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc----CEEEEEEeccchHHHHHhcCCCCCC
Confidence            345677764 889988843  579999999999999999999999988776    4899999999999999999999999


Q ss_pred             eEEEEe--CCC-cCccccCCCCCHHHHHHHHHHhhC
Q 026412           99 TLKFFP--KGN-KDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus        99 t~~~~~--~g~-~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      |+++|.  +|. ....++.|. +.+++.++|++.++
T Consensus        95 t~~~~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l~  129 (133)
T 3cxg_A           95 TFEFYFNLNNEWVLVHTVEGA-NQNDIEKAFQKYCL  129 (133)
T ss_dssp             EEEEEEEETTEEEEEEEEESC-CHHHHHHHHHHHSE
T ss_pred             EEEEEEecCCCeEEEEEEcCC-CHHHHHHHHHHHHH
Confidence            999995  552 256677887 89999999998764

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.80  E-value=2.9e-19  Score=142.54  Aligned_cols=105  Identities=19%  Similarity=0.285  Sum_probs=93.0

Q ss_pred             cEEcChhhHHHHhcCCCcE-EEEEECCCChHHhhHhHHHHHHHHHccC--CCCeEEEEEeCccchhHHHHcCCCCCCeEE
Q 026412           25 VVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTL--EDDVVVANLDADKYKDLAEKYGVSGFPTLK  101 (239)
Q Consensus        25 v~~l~~~~f~~~~~~~k~v-lV~F~a~wC~~C~~~~~~~~~~a~~~~~--~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  101 (239)
                      ...+++++|+.+...++++ +|.||++||++|+++.|.|+++++.++.  ++++.++.||++.+++++++|+|.++||++
T Consensus       118 ~~~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~  197 (226)
T 1a8l_A          118 ETNLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIV  197 (226)
T ss_dssp             CCCCCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEE
T ss_pred             CCCCCHHHHHHHHhcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccCHHHHHhCCCcccCeEE
Confidence            4678899999988666677 9999999999999999999999998862  247999999999999999999999999999


Q ss_pred             EEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412          102 FFPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus       102 ~~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      +|++| +...++.|.++.+++.+||++.+
T Consensus       198 ~~~~G-~~~~~~~G~~~~~~l~~~l~~~l  225 (226)
T 1a8l_A          198 IQVNG-EDRVEFEGAYPEKMFLEKLLSAL  225 (226)
T ss_dssp             EEETT-EEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEeCC-ceeEEEcCCCCHHHHHHHHHHhh
Confidence            99876 56678999999999999998764

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.80  E-value=5e-19  Score=130.09  Aligned_cols=102  Identities=23%  Similarity=0.455  Sum_probs=87.0

Q ss_pred             EcChhhHHHHhc--CCCcEEEEEECCCChHHhhHhHHH---HHHHHHccCCCCeEEEEEeC----ccchhHHHHcCCCCC
Q 026412           27 VLTEDNFEKEVG--QDRGALVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDA----DKYKDLAEKYGVSGF   97 (239)
Q Consensus        27 ~l~~~~f~~~~~--~~k~vlV~F~a~wC~~C~~~~~~~---~~~a~~~~~~~~v~~~~vd~----~~~~~l~~~~~i~~~   97 (239)
                      ..+.++|+..+.  ++++++|.||++||++|+.+.|.+   .++++.++   ++.++.||+    +.+.+++++|+|.++
T Consensus        16 ~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~---~~~~~~vd~~~~~~~~~~l~~~~~v~~~   92 (134)
T 2fwh_A           16 IKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA---DTVLLQANVTANDAQDVALLKHLNVLGL   92 (134)
T ss_dssp             CCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT---TSEEEEEECTTCCHHHHHHHHHTTCCSS
T ss_pred             ecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc---CcEEEEEeCCCCcchHHHHHHHcCCCCC
Confidence            456778888773  489999999999999999999999   89998875   599999999    567889999999999


Q ss_pred             CeEEEEeCCCcCc--cccCCCCCHHHHHHHHHHhhC
Q 026412           98 PTLKFFPKGNKDG--EEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus        98 Pt~~~~~~g~~~~--~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      |++++|+.+|+..  .++.|..+.++|.+++++..+
T Consensus        93 Pt~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~~~  128 (134)
T 2fwh_A           93 PTILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQP  128 (134)
T ss_dssp             SEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC--
T ss_pred             CEEEEECCCCCEeeeeeeeeccCHHHHHHHHHhcCc
Confidence            9999996555655  689999999999999987654

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.80  E-value=1.4e-19  Score=131.95  Aligned_cols=108  Identities=24%  Similarity=0.453  Sum_probs=91.2

Q ss_pred             cEEcChhhHHHHh----cCCCcEEEEEECCCChHHhhHhHHH---HHHHHHccCCCCeEEEEEeCc--cchhHHHHcCCC
Q 026412           25 VVVLTEDNFEKEV----GQDRGALVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDAD--KYKDLAEKYGVS   95 (239)
Q Consensus        25 v~~l~~~~f~~~~----~~~k~vlV~F~a~wC~~C~~~~~~~---~~~a~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~   95 (239)
                      ...++..+|++.+    .++++++|.||++||++|+.+.|.+   ..+++.+.  .++.++.||++  .+..++++|+|.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~~~v~   85 (130)
T 2kuc_A            8 GIAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFN--RHFVNLKMDMEKGEGVELRKKYGVH   85 (130)
T ss_dssp             CCCCBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHH--HHSEEEEECSSSTTHHHHHHHTTCC
T ss_pred             CCCcccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHh--cCeEEEEEecCCcchHHHHHHcCCC
Confidence            4556778888877    3689999999999999999999999   77776653  36889999998  578999999999


Q ss_pred             CCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhCCCC
Q 026412           96 GFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSR  134 (239)
Q Consensus        96 ~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~  134 (239)
                      ++|++++++.+|+...++.|..+.+++.++|++..++..
T Consensus        86 ~~Pt~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~~~~~~  124 (130)
T 2kuc_A           86 AYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVESEG  124 (130)
T ss_dssp             SSCEEEEECTTSCEEEEEESCCCHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence            999999996555777788999999999999999887643

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.79  E-value=3.2e-19  Score=166.23  Aligned_cols=112  Identities=23%  Similarity=0.456  Sum_probs=94.2

Q ss_pred             CCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE
Q 026412           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  101 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  101 (239)
                      ...+..++.++|++.+.++++++|.||||||+||+.+.|.|+++++.+.  +.+.++.|||++++++|++|+|.++||++
T Consensus       115 ~~~v~~l~~~~f~~~i~~~~~~lv~Fya~wC~~C~~~~p~~~~~a~~~~--~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~  192 (780)
T 3apo_A          115 DPEIITLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVD--GLLRIGAVNCGDDRMLCRMKGVNSYPSLF  192 (780)
T ss_dssp             CTTEEECCHHHHHHHHTSSSCEEEEEECSSCHHHHHHHHHHHHHHHHTT--TTSEEEEEETTTCSSCC--------CEEE
T ss_pred             CcceeeechHhHHhhhcCCCcEEEEEeCCCCcchhHhhHHHHHHHHHhc--CceEEEEEeCCCcHHHHHHcCCceeeeEE
Confidence            4568999999999999889999999999999999999999999999986  35999999999999999999999999999


Q ss_pred             EEeCCCcCccccCCCCCHHHHHHHHHHhhCCCCCC
Q 026412          102 FFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDG  136 (239)
Q Consensus       102 ~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~  136 (239)
                      +|++| ....+|.|.++.+.+.+|+.+.+++....
T Consensus       193 ~~~~g-~~~~~~~G~~~~~~l~~~l~~~~~~~~~~  226 (780)
T 3apo_A          193 IFRSG-MAAVKYNGDRSKESLVAFAMQHVRSTVTE  226 (780)
T ss_dssp             EECTT-SCCEECCSCSCHHHHHHHHHTTSCCCEEE
T ss_pred             EEeCC-cEeeEecCCCCHHHHHHHHHHhchhhhee
Confidence            99877 55788999999999999999998765443

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=99.67  E-value=6.4e-21  Score=133.59  Aligned_cols=102  Identities=34%  Similarity=0.710  Sum_probs=90.7

Q ss_pred             cEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEE
Q 026412           25 VVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF  103 (239)
Q Consensus        25 v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~  103 (239)
                      +..+++++|.+.+ .++++++|.||++||++|+.+.|.+.++++.++  +++.++.+|++.+++++++|++.++|++++|
T Consensus         3 v~~l~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   80 (106)
T 2yj7_A            3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYE--GKVKVVKVNVDENPNTAAQYGIRSIPTLLLF   80 (106)
Confidence            5678899998766 778999999999999999999999999999886  3699999999999999999999999999999


Q ss_pred             eCCCcCccccCCCCCHHHHHHHHHHh
Q 026412          104 PKGNKDGEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus       104 ~~g~~~~~~~~g~~~~~~l~~~l~~~  129 (239)
                      ++| +...++.|..+.+++.+++++.
T Consensus        81 ~~g-~~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 2yj7_A           81 KNG-QVVDRLVGAQPKEALKERIDKH  105 (106)
Confidence            655 6677889999999999998764

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.78  E-value=2e-18  Score=153.39  Aligned_cols=113  Identities=27%  Similarity=0.533  Sum_probs=98.8

Q ss_pred             CCCcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccC-CCCeEEEEEeCc--cchhHHHHcCCCCC
Q 026412           22 ADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTL-EDDVVVANLDAD--KYKDLAEKYGVSGF   97 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~-~~~v~~~~vd~~--~~~~l~~~~~i~~~   97 (239)
                      ...+..+++++|+..+ .++++++|+|||+||++|+++.|.|+++++.+.. +..+.++.|||+  .+++++++|+|.++
T Consensus        11 ~~~V~~Lt~~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~~   90 (519)
T 3t58_A           11 SDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGF   90 (519)
T ss_dssp             TSSSEEECTTTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCSB
T ss_pred             CCCcEECChHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCccc
Confidence            4578999999999988 6679999999999999999999999999999874 346999999995  58999999999999


Q ss_pred             CeEEEEeCCCc---CccccCCCCCHHHHHHHHHHhhCCCC
Q 026412           98 PTLKFFPKGNK---DGEEYGGGRDLEDFVSFINEKCGTSR  134 (239)
Q Consensus        98 Pt~~~~~~g~~---~~~~~~g~~~~~~l~~~l~~~~~~~~  134 (239)
                      ||+++|++|.+   ....+.|.++.+.+.++|.+.++...
T Consensus        91 PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~~~  130 (519)
T 3t58_A           91 PTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHR  130 (519)
T ss_dssp             SEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTTCC
T ss_pred             CEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhhcc
Confidence            99999986432   44567788999999999999987655

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.78  E-value=7.5e-19  Score=128.71  Aligned_cols=98  Identities=21%  Similarity=0.406  Sum_probs=83.6

Q ss_pred             hhHHHHh----cCCCcEEEEEECCCChHHhhHhHHHH--HHHHHccCCCCeEEEEEeC---ccchhHHHHcCC---CCCC
Q 026412           31 DNFEKEV----GQDRGALVEFYAPWCGHCKNLAPTYE--KVAAAFTLEDDVVVANLDA---DKYKDLAEKYGV---SGFP   98 (239)
Q Consensus        31 ~~f~~~~----~~~k~vlV~F~a~wC~~C~~~~~~~~--~~a~~~~~~~~v~~~~vd~---~~~~~l~~~~~i---~~~P   98 (239)
                      .+|++.+    .++++++|.||++||++|+.+.|.+.  ++++.+.  +++.++.||+   +.+.+++++|+|   .++|
T Consensus        16 ~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~--~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~P   93 (133)
T 3fk8_A           16 TQVKKALAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIA--KHFEVVKIDVGNFDRNLELSQAYGDPIQDGIP   93 (133)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHH--HHCEEEEEECTTTTSSHHHHHHTTCGGGGCSS
T ss_pred             hHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhc--CCEEEEEEeCCcccchHHHHHHhCCccCCccc
Confidence            4455444    56899999999999999999999999  9998875  3699999999   889999999999   9999


Q ss_pred             eEEEEeCCCcCccccCC-------CCCHHHHHHHHHHhh
Q 026412           99 TLKFFPKGNKDGEEYGG-------GRDLEDFVSFINEKC  130 (239)
Q Consensus        99 t~~~~~~g~~~~~~~~g-------~~~~~~l~~~l~~~~  130 (239)
                      |+++|+.+|+...++.|       ..+.+++.+|+++..
T Consensus        94 t~~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l~  132 (133)
T 3fk8_A           94 AVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAKIT  132 (133)
T ss_dssp             EEEEECTTSCEEEECCSCTTTTGGGSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCEEEEecCCcccccccCCHHHHHHHHHHhc
Confidence            99999655577777777       578999999998753

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.77  E-value=1.4e-18  Score=154.47  Aligned_cols=108  Identities=36%  Similarity=0.737  Sum_probs=94.4

Q ss_pred             CCcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHcc-CCCCeEEEEEeCccchhHHHHcCCCCCCeE
Q 026412           23 DDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFT-LEDDVVVANLDADKYKDLAEKYGVSGFPTL  100 (239)
Q Consensus        23 ~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~-~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  100 (239)
                      ..+..+++++|+..+ +++++++|.||||||+||+.+.|.|+++++.+. ...++.++.+|++.+... . |+|.++||+
T Consensus       358 ~~v~~l~~~~f~~~v~~~~k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~-~-~~v~~~Pt~  435 (504)
T 2b5e_A          358 SSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVR-G-VVIEGYPTI  435 (504)
T ss_dssp             CSEEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCCCS-S-CCCSSSSEE
T ss_pred             ccceecccccHHHhhccCCCCEEEEEECCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCccccc-c-CCceecCeE
Confidence            458889999999998 678999999999999999999999999999886 445799999999977644 4 999999999


Q ss_pred             EEEeCCCc-CccccCCCCCHHHHHHHHHHhhCC
Q 026412          101 KFFPKGNK-DGEEYGGGRDLEDFVSFINEKCGT  132 (239)
Q Consensus       101 ~~~~~g~~-~~~~~~g~~~~~~l~~~l~~~~~~  132 (239)
                      ++|++|.. .+.+|.|.++.+.+.+||++....
T Consensus       436 ~~~~~G~~~~~~~~~G~~~~~~l~~~i~~~~~~  468 (504)
T 2b5e_A          436 VLYPGGKKSESVVYQGSRSLDSLFDFIKENGHF  468 (504)
T ss_dssp             EEECCTTSCCCCBCCSCCCHHHHHHHHHHHCTT
T ss_pred             EEEeCCceecceEecCCCCHHHHHHHHHhcCCC
Confidence            99987743 378899999999999999998653

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.77  E-value=1.3e-19  Score=132.02  Aligned_cols=107  Identities=28%  Similarity=0.629  Sum_probs=92.5

Q ss_pred             CCCcEEc-ChhhHHHHhc----CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCC
Q 026412           22 ADDVVVL-TEDNFEKEVG----QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG   96 (239)
Q Consensus        22 ~~~v~~l-~~~~f~~~~~----~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~   96 (239)
                      ...+..+ +.++|++.+.    ++++++|.||++||++|+.+.|.+.++++.++   ++.++.||++.+++++++|+|.+
T Consensus        13 ~~~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~---~v~~~~v~~~~~~~~~~~~~v~~   89 (130)
T 1wmj_A           13 EGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP---GAVFLKVDVDELKEVAEKYNVEA   89 (130)
T ss_dssp             CSSSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT---TBCCEECCTTTSGGGHHHHTCCS
T ss_pred             CcceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC---CCEEEEEeccchHHHHHHcCCCc
Confidence            3456666 5689998883    58999999999999999999999999999985   69999999999999999999999


Q ss_pred             CCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhCCC
Q 026412           97 FPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS  133 (239)
Q Consensus        97 ~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~  133 (239)
                      +||++++++| +...++.| .+.+++.++|++.++..
T Consensus        90 ~Pt~~~~~~g-~~~~~~~g-~~~~~l~~~l~~~~~~~  124 (130)
T 1wmj_A           90 MPTFLFIKDG-AEADKVVG-ARKDDLQNTIVKHVGAT  124 (130)
T ss_dssp             SCCCCBCTTT-TCCBCCCT-TCTTTHHHHHHHHTSSS
T ss_pred             cceEEEEeCC-eEEEEEeC-CCHHHHHHHHHHHHhcc
Confidence            9999999665 66677788 58899999999987643

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.77  E-value=1.4e-19  Score=157.57  Aligned_cols=106  Identities=29%  Similarity=0.430  Sum_probs=90.2

Q ss_pred             CCCcEEcChhhHHHHhcC--CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCC------CeEEEEEeCccchhHHHHcC
Q 026412           22 ADDVVVLTEDNFEKEVGQ--DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLED------DVVVANLDADKYKDLAEKYG   93 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~--~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~------~v~~~~vd~~~~~~l~~~~~   93 (239)
                      ...+..++.++|++.+..  +++++|+|||+||++|+.+.|.|+++++.+....      .+.++.||++.+++++++|+
T Consensus        22 ~~~V~~Lt~~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y~  101 (470)
T 3qcp_A           22 DSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYD  101 (470)
T ss_dssp             CTTEEECSCSCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHTT
T ss_pred             CCCcEECCHHHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHcC
Confidence            456899999999998844  4789999999999999999999999999987442      49999999999999999999


Q ss_pred             CCCCCeEEEEeCCC-cCccccCCCCCHHHHHHHHHH
Q 026412           94 VSGFPTLKFFPKGN-KDGEEYGGGRDLEDFVSFINE  128 (239)
Q Consensus        94 i~~~Pt~~~~~~g~-~~~~~~~g~~~~~~l~~~l~~  128 (239)
                      |.++||+++|++|+ ..+..|.|.++.+.+ .|+.+
T Consensus       102 V~~~PTlilf~~gg~~~~~~y~G~r~~e~L-~fI~k  136 (470)
T 3qcp_A          102 INFVPRLFFFYPRDSCRSNEECGTSSLEHV-AFENS  136 (470)
T ss_dssp             CCSSCEEEEEEESSCCCTTSCCCCCCEEEE-ECSCT
T ss_pred             CCccCeEEEEECCCceEEEEeeCCCCHHHH-HHHHH
Confidence            99999999997654 457788898776655 55543

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.77  E-value=4.3e-18  Score=137.61  Aligned_cols=111  Identities=20%  Similarity=0.248  Sum_probs=92.0

Q ss_pred             EcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHcc--CCCCeEEEEEeCccchhHHHHcCCCCCCeEEEE
Q 026412           27 VLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFT--LEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF  103 (239)
Q Consensus        27 ~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~--~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~  103 (239)
                      .+++++++.+. ..++.+++.||+|||+||+.+.|.|++++..+.  .++++.++.||++.+++++++|+|.++||+++ 
T Consensus       124 ~l~~~~~~~~~~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~~~~~~~~V~~vPt~~i-  202 (243)
T 2hls_A          124 GLEDATKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSIAI-  202 (243)
T ss_dssp             CCCHHHHHHHHHCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCHHHHHHTTCCSSSEEEE-
T ss_pred             CCCHHHHHHHHHcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCHHHHHHcCCeeeCeEEE-
Confidence            46677777765 346678999999999999999999999999883  22579999999999999999999999999987 


Q ss_pred             eCCCcCccccCCCCCHHHHHHHHHHhhCCCCCCCCCccc
Q 026412          104 PKGNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKGQLTS  142 (239)
Q Consensus       104 ~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~  142 (239)
                       +| +.  .|.|.++.+++.++|.+.++..+...|.++.
T Consensus       203 -~G-~~--~~~G~~~~~~l~~~l~~~~~~~~~~~g~~~~  237 (243)
T 2hls_A          203 -NG-YL--VFVGVPYEEDFLDYVKSAAEGRLTVKGPIRA  237 (243)
T ss_dssp             -TT-EE--EEESCCCHHHHHHHHHHHHTTCCCCCC----
T ss_pred             -CC-EE--EEeCCCCHHHHHHHHHHHhhcccccCCCcCc
Confidence             55 32  4899999999999999999998888877544

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.76  E-value=4.4e-19  Score=140.91  Aligned_cols=102  Identities=22%  Similarity=0.310  Sum_probs=88.3

Q ss_pred             CCcEEc-ChhhHHHHhc-C--CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCC
Q 026412           23 DDVVVL-TEDNFEKEVG-Q--DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP   98 (239)
Q Consensus        23 ~~v~~l-~~~~f~~~~~-~--~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P   98 (239)
                      ..+..+ +.++|.+.+. .  +++++|.||++||++|+.+.|.|.+++..++   ++.|+.||++ ++.++.+|+|.++|
T Consensus        99 g~v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~---~v~f~~vd~~-~~~l~~~~~i~~~P  174 (217)
T 2trc_P           99 GFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP---MVKFCKIRAS-NTGAGDRFSSDVLP  174 (217)
T ss_dssp             CSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT---TSEEEEEEHH-HHTCSTTSCGGGCS
T ss_pred             CeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCC---CeEEEEEECC-cHHHHHHCCCCCCC
Confidence            457787 8999999983 3  3899999999999999999999999999984   7999999999 88899999999999


Q ss_pred             eEEEEeCCCcCccccCCCCC-------HHHHHHHHHHh
Q 026412           99 TLKFFPKGNKDGEEYGGGRD-------LEDFVSFINEK  129 (239)
Q Consensus        99 t~~~~~~g~~~~~~~~g~~~-------~~~l~~~l~~~  129 (239)
                      |+++|++| +...++.|..+       .+.|..||.+.
T Consensus       175 Tl~~~~~G-~~v~~~~G~~~~~g~~~~~~~Le~~L~~~  211 (217)
T 2trc_P          175 TLLVYKGG-ELISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             EEEEEETT-EEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             EEEEEECC-EEEEEEeCCcccCcccCCHHHHHHHHHHc
Confidence            99999876 55667777655       48999999764

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.75  E-value=3.2e-18  Score=130.94  Aligned_cols=103  Identities=16%  Similarity=0.326  Sum_probs=82.6

Q ss_pred             EEcChhhHHHHh----cCCCcEEEEEECCCChHHhhHhHHH---HHHHHHccCCCCeEEEEEeCccchhH----------
Q 026412           26 VVLTEDNFEKEV----GQDRGALVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDADKYKDL----------   88 (239)
Q Consensus        26 ~~l~~~~f~~~~----~~~k~vlV~F~a~wC~~C~~~~~~~---~~~a~~~~~~~~v~~~~vd~~~~~~l----------   88 (239)
                      ...+..+|++.+    .++++++|+|||+||++|+.+.+.+   .++.+.+.  +++.++.||++++.++          
T Consensus        29 ~~~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~--~~~~~v~v~~d~~~~~~~~~~~~~~~  106 (172)
T 3f9u_A           29 VHAKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIIN--NDYVLITLYVDNKTPLTEPVKIMENG  106 (172)
T ss_dssp             CCCCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHH--HHCEEEEEETTCCCEEEEEEEEEETT
T ss_pred             cccchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc--CCEEEEEEecCcccccchhhhhhhcc
Confidence            445566777766    6789999999999999999985544   45555443  2699999999876544          


Q ss_pred             ----------------HHHcCCCCCCeEEEEeCCCcCccccCCCCC-HHHHHHHHHHhh
Q 026412           89 ----------------AEKYGVSGFPTLKFFPKGNKDGEEYGGGRD-LEDFVSFINEKC  130 (239)
Q Consensus        89 ----------------~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~-~~~l~~~l~~~~  130 (239)
                                      +++|+|.++||+++++.+|+...++.|..+ .+++.++|++.+
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~l  165 (172)
T 3f9u_A          107 TERTLRTVGDKWSYLQRVKFGANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTGL  165 (172)
T ss_dssp             EEEEEEEHHHHHHHHHHHHHSCCCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhHHHHHHcCCCCcceEEEECCCCCEEeeccCCCCCHHHHHHHHHHHH
Confidence                            789999999999999766677788889988 999999998764

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=99.75  E-value=3e-18  Score=138.10  Aligned_cols=102  Identities=20%  Similarity=0.253  Sum_probs=86.7

Q ss_pred             CCcEEc-ChhhHHHHhc---CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCC
Q 026412           23 DDVVVL-TEDNFEKEVG---QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP   98 (239)
Q Consensus        23 ~~v~~l-~~~~f~~~~~---~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P   98 (239)
                      ..+..+ +..+|.+.+.   ++++|||+||++||++|+.+.|.|.+++..++   ++.|+.||++. ..++.+|+|.++|
T Consensus       112 G~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~---~v~f~kVd~d~-~~l~~~~~I~~~P  187 (245)
T 1a0r_P          112 GFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYP---MVKFCKIKASN-TGAGDRFSSDVLP  187 (245)
T ss_dssp             CSEEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCT---TSEEEEEEHHH-HCCTTSSCTTTCS
T ss_pred             CeEEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC---CCEEEEEeCCc-HHHHHHCCCCCCC
Confidence            467788 7899999983   47899999999999999999999999999986   59999999987 7789999999999


Q ss_pred             eEEEEeCCCcCccccCCC-------CCHHHHHHHHHHh
Q 026412           99 TLKFFPKGNKDGEEYGGG-------RDLEDFVSFINEK  129 (239)
Q Consensus        99 t~~~~~~g~~~~~~~~g~-------~~~~~l~~~l~~~  129 (239)
                      |+++|++| ....++.|.       .+.+.|..||.+.
T Consensus       188 Tll~~~~G-~~v~~~vG~~~~~g~~~~~e~Le~~L~~~  224 (245)
T 1a0r_P          188 TLLVYKGG-ELLSNFISVTEQLAEEFFTGDVESFLNEY  224 (245)
T ss_dssp             EEEEEETT-EEEEEETTGGGGSCTTCCHHHHHHHHHTT
T ss_pred             EEEEEECC-EEEEEEeCCcccccccccHHHHHHHHHHc
Confidence            99999876 444444442       5678899999875

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.74  E-value=3.9e-18  Score=114.81  Aligned_cols=82  Identities=27%  Similarity=0.456  Sum_probs=73.8

Q ss_pred             CcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHH
Q 026412           41 RGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLE  120 (239)
Q Consensus        41 k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~  120 (239)
                      .+.+|.||++||++|+++.|.++++++.++  +++.++.+|++++++++++|++.++||+++  +| +.  ++.|..+.+
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G-~~--~~~G~~~~~   75 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMP--DAVEVEYINVMENPQKAMEYGIMAVPTIVI--NG-DV--EFIGAPTKE   75 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCS--SSEEEEEEESSSSCCTTTSTTTCCSSEEEE--TT-EE--ECCSSSSSH
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcC--CceEEEEEECCCCHHHHHHCCCcccCEEEE--CC-EE--eeecCCCHH
Confidence            578999999999999999999999999986  479999999999999999999999999988  55 33  788988999


Q ss_pred             HHHHHHHHh
Q 026412          121 DFVSFINEK  129 (239)
Q Consensus       121 ~l~~~l~~~  129 (239)
                      ++.++|++.
T Consensus        76 ~l~~~l~~~   84 (85)
T 1fo5_A           76 ALVEAIKKR   84 (85)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999875

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=99.74  E-value=2.1e-17  Score=121.27  Aligned_cols=105  Identities=12%  Similarity=0.180  Sum_probs=92.5

Q ss_pred             CCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCC--CCeE
Q 026412           23 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG--FPTL  100 (239)
Q Consensus        23 ~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~--~Pt~  100 (239)
                      .-+.+++.++|++.+.++.+++|.||++ |++|+.+.|.++++|+++.  +++.|+.||+++++.++++|||++  +||+
T Consensus         6 plv~~~t~~~f~~~~~~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~--gk~~f~~vd~d~~~~~a~~~gi~~~~iPtl   82 (133)
T 2djk_A            6 PLIGEIGPETYSDYMSAGIPLAYIFAET-AEERKELSDKLKPIAEAQR--GVINFGTIDAKAFGAHAGNLNLKTDKFPAF   82 (133)
T ss_dssp             CCSEECCHHHHHHHHHTTSCEEEEECSC-SSSHHHHHHHHHHHHHSST--TTSEEEEECTTTTGGGTTTTTCCSSSSSEE
T ss_pred             CceeccChHHHHHHhcCCCCEEEEEecC-hhhHHHHHHHHHHHHHHhC--CeEEEEEEchHHhHHHHHHcCCCcccCCEE
Confidence            4578899999999888889999999999 8999999999999999986  469999999999999999999999  9999


Q ss_pred             EEEeC-CCcCccccC--CCCCHHHHHHHHHHhhC
Q 026412          101 KFFPK-GNKDGEEYG--GGRDLEDFVSFINEKCG  131 (239)
Q Consensus       101 ~~~~~-g~~~~~~~~--g~~~~~~l~~~l~~~~~  131 (239)
                      ++|+. ++.. ....  |..+.+.+.+|+++.+.
T Consensus        83 ~i~~~~~g~~-~~~~~~g~~~~~~l~~fi~~~l~  115 (133)
T 2djk_A           83 AIQEVAKNQK-FPFDQEKEITFEAIKAFVDDFVA  115 (133)
T ss_dssp             EEECTTTCCB-CCCCSSSCCCHHHHHHHHHHHHH
T ss_pred             EEEecCcCcc-cCCCCccccCHHHHHHHHHHHHc
Confidence            99986 3333 4554  99999999999998763

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.74  E-value=9.1e-18  Score=121.50  Aligned_cols=101  Identities=18%  Similarity=0.286  Sum_probs=84.7

Q ss_pred             CcEEcChhhHHHHhc--CCCcEEEEEECC-------CChHHhhHhHHHHHHHHHccCCCCeEEEEEeC-------ccchh
Q 026412           24 DVVVLTEDNFEKEVG--QDRGALVEFYAP-------WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA-------DKYKD   87 (239)
Q Consensus        24 ~v~~l~~~~f~~~~~--~~k~vlV~F~a~-------wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~-------~~~~~   87 (239)
                      .+...+.++|.+.+.  ++++++|.||++       ||++|+.+.|.+.++++.++  +++.++.||+       +.+..
T Consensus         6 ~v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~--~~~~~~~vd~~~~~~~~d~~~~   83 (123)
T 1wou_A            6 EVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHIS--EGCVFIYCQVGEKPYWKDPNND   83 (123)
T ss_dssp             EEEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCC--TTEEEEEEECCCHHHHHCTTCH
T ss_pred             eEEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcC--CCcEEEEEECCCchhhhchhHH
Confidence            356678899999884  489999999999       99999999999999999875  3799999999       78889


Q ss_pred             HHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHH
Q 026412           88 LAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE  128 (239)
Q Consensus        88 l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~  128 (239)
                      ++++|+|.++||+++|++++ ....+.| .+.+.+.+||++
T Consensus        84 ~~~~~~i~~~Pt~~~~~~~~-~~~g~~~-~~~~~l~~~i~~  122 (123)
T 1wou_A           84 FRKNLKVTAVPTLLKYGTPQ-KLVESEC-LQANLVEMLFSE  122 (123)
T ss_dssp             HHHHHCCCSSSEEEETTSSC-EEEGGGG-GCHHHHHHHHHC
T ss_pred             HHHHCCCCeeCEEEEEcCCc-eEecccc-CCHHHHHHHHhc
Confidence            99999999999999998753 3333333 578888888864

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.73  E-value=1.5e-17  Score=132.87  Aligned_cols=101  Identities=24%  Similarity=0.301  Sum_probs=89.0

Q ss_pred             CCcEEcChhhHHHHhcCCCcE-EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE
Q 026412           23 DDVVVLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  101 (239)
Q Consensus        23 ~~v~~l~~~~f~~~~~~~k~v-lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  101 (239)
                      ..+..+++++|+.++..++++ +|.||++||++|+.+.|.+++++..++   ++.++.||++.+++++++|+|.++||++
T Consensus       118 ~~~~~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~---~v~~~~vd~~~~~~l~~~~~v~~~Pt~~  194 (229)
T 2ywm_A          118 QRKPQLSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALAND---YITSKVIDASENQDLAEQFQVVGVPKIV  194 (229)
T ss_dssp             TTCCSCCHHHHHHHTTCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHCT---TEEEEEEEGGGCHHHHHHTTCCSSSEEE
T ss_pred             CCccCCCHHHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHHCC---CeEEEEEECCCCHHHHHHcCCcccCEEE
Confidence            346778999999988666665 889999999999999999999999973   7999999999999999999999999998


Q ss_pred             EEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412          102 FFPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus       102 ~~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      +  +| + ..++.|.++.+++.+||++.+
T Consensus       195 ~--~G-~-~~~~~G~~~~~~l~~~l~~~~  219 (229)
T 2ywm_A          195 I--NK-G-VAEFVGAQPENAFLGYIMAVY  219 (229)
T ss_dssp             E--GG-G-TEEEESCCCHHHHHHHHHHHH
T ss_pred             E--CC-E-EEEeeCCCCHHHHHHHHHHHh
Confidence            8  55 4 566899999999999998765

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.73  E-value=5.5e-18  Score=114.08  Aligned_cols=82  Identities=21%  Similarity=0.384  Sum_probs=73.3

Q ss_pred             cEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHH
Q 026412           42 GALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLED  121 (239)
Q Consensus        42 ~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~  121 (239)
                      ..+|.||++||++|+.+.|.++++++.++  +++.++.+|++++++++++|++.++||+++  +| +.  ++.|..+.++
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G-~~--~~~G~~~~~~   75 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFG--DKIDVEKIDIMVDREKAIEYGLMAVPAIAI--NG-VV--RFVGAPSREE   75 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHC--SSCCEEEECTTTCGGGGGGTCSSCSSEEEE--TT-TE--EEECSSCCHH
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhc--CCeEEEEEECCCCHHHHHhCCceeeCEEEE--CC-EE--EEccCCCHHH
Confidence            46899999999999999999999999986  469999999999999999999999999988  55 33  7889889999


Q ss_pred             HHHHHHHhh
Q 026412          122 FVSFINEKC  130 (239)
Q Consensus       122 l~~~l~~~~  130 (239)
                      +.++|++.+
T Consensus        76 l~~~l~~~l   84 (85)
T 1nho_A           76 LFEAINDEM   84 (85)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHh
Confidence            999998764

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.73  E-value=1.3e-17  Score=117.15  Aligned_cols=99  Identities=18%  Similarity=0.194  Sum_probs=82.8

Q ss_pred             CcEEc-ChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchh----HHHHcCCCC-C
Q 026412           24 DVVVL-TEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD----LAEKYGVSG-F   97 (239)
Q Consensus        24 ~v~~l-~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~-~   97 (239)
                      .+..+ +.++|++++.++++++|.|+|+|||+|+.+.|.++++++.    +++.++.||++++++    ++.+|||.+ .
T Consensus         7 ~~~~i~s~e~f~~ii~~~~~vvi~khatwCgpc~~~~~~~e~~~~~----~~v~~~~vdVde~r~~Sn~IA~~~~V~h~s   82 (112)
T 3iv4_A            7 VAIKLSSIDQFEQVIEENKYVFVLKHSETCPISANAYDQFNKFLYE----RDMDGYYLIVQQERDLSDYIAKKTNVKHES   82 (112)
T ss_dssp             CEEECCSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHH----HTCCEEEEEGGGGHHHHHHHHHHHTCCCCS
T ss_pred             ceeecCCHHHHHHHHhcCCCEEEEEECCcCHhHHHHHHHHHHHhcc----CCceEEEEEeecCchhhHHHHHHhCCccCC
Confidence            34454 5678999997799999999999999999999999999984    369999999999876    799999995 9


Q ss_pred             CeEEEEeCCCcCccccCCCCCHHHHHHHH
Q 026412           98 PTLKFFPKGNKDGEEYGGGRDLEDFVSFI  126 (239)
Q Consensus        98 Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l  126 (239)
                      |++++|++|......-.+..+.+.+.+.+
T Consensus        83 Pq~il~k~G~~v~~~SH~~I~~~~l~~~~  111 (112)
T 3iv4_A           83 PQAFYFVNGEMVWNRDHGDINVSSLAQAE  111 (112)
T ss_dssp             SEEEEEETTEEEEEEEGGGCSHHHHHHHT
T ss_pred             CeEEEEECCEEEEEeeccccCHHHHHHhh
Confidence            99999999844434456778888887654

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=99.57  E-value=2.7e-19  Score=130.54  Aligned_cols=103  Identities=22%  Similarity=0.365  Sum_probs=86.1

Q ss_pred             hhhHHHHhcCCCcEEEEEECCCChHHhhHhHHH---HHHHHHccCCCCeEEEEEeCc--cchhHHHHcCCCCCCeEEEEe
Q 026412           30 EDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDAD--KYKDLAEKYGVSGFPTLKFFP  104 (239)
Q Consensus        30 ~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~---~~~a~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~Pt~~~~~  104 (239)
                      .+.+.....++++++|.||++||++|+.+.|.+   .++++.+.  +++.++.||++  .+.+++++|+|.++||+++|+
T Consensus         9 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d   86 (130)
T 2lst_A            9 PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLE--ARFVVASVSVDTPEGQELARRYRVPGTPTFVFLV   86 (130)
Confidence            455666667789999999999999999999999   88888765  35889999984  668899999999999999995


Q ss_pred             -CCCcC--ccccCCCCCHHHHHHHHHHhhCCCC
Q 026412          105 -KGNKD--GEEYGGGRDLEDFVSFINEKCGTSR  134 (239)
Q Consensus       105 -~g~~~--~~~~~g~~~~~~l~~~l~~~~~~~~  134 (239)
                       ++|+.  ..++.|..+.+.+.++|++.++...
T Consensus        87 ~~~G~~~~~~~~~G~~~~~~l~~~l~~~~~~~~  119 (130)
T 2lst_A           87 PKAGAWEEVGRLFGSRPRAEFLKELRQVCVKGG  119 (130)
Confidence             33466  6788999999999999998876543

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.71  E-value=3.8e-17  Score=122.93  Aligned_cols=91  Identities=19%  Similarity=0.317  Sum_probs=77.9

Q ss_pred             cCCCcEEEEEE-CCCChHHhhHhHHH---HHHHHHccCCCCeEEEEEeCccc-----------hhHHHHcCCCCCCeEEE
Q 026412           38 GQDRGALVEFY-APWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDADKY-----------KDLAEKYGVSGFPTLKF  102 (239)
Q Consensus        38 ~~~k~vlV~F~-a~wC~~C~~~~~~~---~~~a~~~~~~~~v~~~~vd~~~~-----------~~l~~~~~i~~~Pt~~~  102 (239)
                      .++++++|.|| ++||++|+.+.|.+   .++.+.+.  .++.++.||++..           .+++++|+|.++||+++
T Consensus        45 ~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~--~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~  122 (154)
T 2ju5_A           45 QDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAG--VHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGFPELVF  122 (154)
T ss_dssp             HHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHH--HHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCSSSEEEE
T ss_pred             hCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhc--CcEEEEEecCccccCCChhhHhhHHHHHHHcCCCCCCEEEE
Confidence            55899999999 99999999999999   77766543  3689999999764           48999999999999999


Q ss_pred             EeCCCcCccccCCCC--CHHHHHHHHHHhhC
Q 026412          103 FPKGNKDGEEYGGGR--DLEDFVSFINEKCG  131 (239)
Q Consensus       103 ~~~g~~~~~~~~g~~--~~~~l~~~l~~~~~  131 (239)
                      ++.+|+...++ |..  +.+.+.++|++.++
T Consensus       123 ~d~~G~~~~~~-G~~~~~~~~l~~~l~~~l~  152 (154)
T 2ju5_A          123 IDAEGKQLARM-GFEPGGGAAYVSKVKSALK  152 (154)
T ss_dssp             ECTTCCEEEEE-CCCTTCHHHHHHHHHHHHT
T ss_pred             EcCCCCEEEEe-cCCCCCHHHHHHHHHHHHh
Confidence            97666777778 887  99999999998765

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=99.71  E-value=2.9e-18  Score=121.98  Aligned_cols=93  Identities=15%  Similarity=0.118  Sum_probs=70.6

Q ss_pred             cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc--hhHHHHcCCCCCCeEEEEeCCCcCccccCC
Q 026412           38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY--KDLAEKYGVSGFPTLKFFPKGNKDGEEYGG  115 (239)
Q Consensus        38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~--~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g  115 (239)
                      ++...++|.|||+||++|+.+.+.+....+.......+.+..||++.+  .+++.+|+|.++||+++|++| +...++.|
T Consensus        16 ~~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~G-~ev~Ri~G   94 (116)
T 3dml_A           16 DKAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFVLMAGD-VESGRLEG   94 (116)
T ss_dssp             ---CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEETT-EEEEEEEC
T ss_pred             ccCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCchhHHHHCCCCCCCEEEEEECC-EEEeeecC
Confidence            345789999999999999999875433221110001266788888765  588999999999999999966 77789999


Q ss_pred             CCCHHHHHHHHHHhhC
Q 026412          116 GRDLEDFVSFINEKCG  131 (239)
Q Consensus       116 ~~~~~~l~~~l~~~~~  131 (239)
                      ..+.+.|.+||++.++
T Consensus        95 ~~~~~~f~~~L~~~l~  110 (116)
T 3dml_A           95 YPGEDFFWPMLARLIG  110 (116)
T ss_dssp             CCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999987653

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.70  E-value=8.5e-18  Score=118.59  Aligned_cols=76  Identities=18%  Similarity=0.368  Sum_probs=63.8

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc------cchhHHHHcCCCCCCeEEEEeCCCcCccc
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD------KYKDLAEKYGVSGFPTLKFFPKGNKDGEE  112 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~------~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~  112 (239)
                      .+++++|.|||+||++|+.+.|.|+++++.+.        .||++      .+++++++|+|+++||+++  +| +   .
T Consensus        11 ~~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~--------~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i--~G-~---~   76 (106)
T 3kp8_A           11 LRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP--------YVECSPNGPGTPQAQECTEAGITSYPTWII--NG-R---T   76 (106)
T ss_dssp             HHHHTCEEEECTTCHHHHHHHHHHGGGGGGSC--------EEESCTTCTTSCCCHHHHHTTCCSSSEEEE--TT-E---E
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHHHHHHhCC--------EEEEecccccchhHHHHHHcCCeEeCEEEE--CC-E---E
Confidence            35678999999999999999999999987763        45555      5789999999999999776  54 3   4


Q ss_pred             cCCCCCHHHHHHHHHH
Q 026412          113 YGGGRDLEDFVSFINE  128 (239)
Q Consensus       113 ~~g~~~~~~l~~~l~~  128 (239)
                      |.|.++.+++.+|+.-
T Consensus        77 ~~G~~~~~~l~~~~~~   92 (106)
T 3kp8_A           77 YTGVRSLEALAVASGY   92 (106)
T ss_dssp             EESCCCHHHHHHHHTC
T ss_pred             ecCCCCHHHHHHHhCC
Confidence            8899999999999854

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.70  E-value=8.2e-17  Score=117.60  Aligned_cols=101  Identities=20%  Similarity=0.361  Sum_probs=84.2

Q ss_pred             EEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc---------------------
Q 026412           26 VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------   84 (239)
Q Consensus        26 ~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~---------------------   84 (239)
                      ..++++.+.-...++++++|.||++||++|+.+.|.+.++++.++   ++.++.|+++.                     
T Consensus        10 ~~~~g~~~~l~~~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d   86 (136)
T 1lu4_A           10 TTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP---AVTFVGIATRADVGAMQSFVSKYNLNFTNLND   86 (136)
T ss_dssp             EBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSCHHHHHHHHHHHTCCSEEEEC
T ss_pred             ecCCCCeecHHHhCCCEEEEEEECCcChhHHHHHHHHHHHHHHCC---CcEEEEEEcCCCHHHHHHHHHHcCCCceEEEC
Confidence            344444444333467899999999999999999999999999986   78999999876                     


Q ss_pred             -chhHHHHcCCCCCCeEEEEeCCCcCccccC---CCCCHHHHHHHHHHhh
Q 026412           85 -YKDLAEKYGVSGFPTLKFFPKGNKDGEEYG---GGRDLEDFVSFINEKC  130 (239)
Q Consensus        85 -~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~---g~~~~~~l~~~l~~~~  130 (239)
                       +..++++|++.++|++++++++|+.. .+.   |..+.+++.++|++.+
T Consensus        87 ~~~~~~~~~~i~~~P~~~lid~~G~i~-~~~~~~g~~~~~~l~~~l~~ll  135 (136)
T 1lu4_A           87 ADGVIWARYNVPWQPAFVFYRADGTST-FVNNPTAAMSQDELSGRVAALT  135 (136)
T ss_dssp             TTSHHHHHTTCCSSSEEEEECTTSCEE-EECCSSSCCCHHHHHHHHHHC-
T ss_pred             CchhHHHhcCCCCCCEEEEECCCCcEE-EEEcCCCccCHHHHHHHHHHHh
Confidence             67899999999999999997766766 888   9999999999998753

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.70  E-value=1.5e-16  Score=117.71  Aligned_cols=104  Identities=15%  Similarity=0.270  Sum_probs=88.8

Q ss_pred             EEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeC-----------------------
Q 026412           26 VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA-----------------------   82 (239)
Q Consensus        26 ~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~-----------------------   82 (239)
                      ..++++.+.....++++++|.||++||++|+.+.|.+.++++.++..  +.++.|++                       
T Consensus        15 ~~~~g~~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~   92 (148)
T 2b5x_A           15 AWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ--LNVVAVHMPRSEDDLDPGKIKETAAEHDITQ   92 (148)
T ss_dssp             EEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT--SEEEEEECCCSTTTSSHHHHHHHHHHTTCCS
T ss_pred             ccccCcccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCC--cEEEEEEcCCCccccCHHHHHHHHHHcCCCc
Confidence            45677777666667899999999999999999999999999998743  88888885                       


Q ss_pred             ----ccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412           83 ----DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus        83 ----~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                          +.+..+++.|++.++|++++++++|+....+.|..+.+++.++|++.+.
T Consensus        93 ~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~  145 (148)
T 2b5x_A           93 PIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVLA  145 (148)
T ss_dssp             CEEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHHHT
T ss_pred             ceEECCchhHHHHhCCCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHh
Confidence                4456899999999999999997666777788899999999999998775

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.69  E-value=1.4e-16  Score=116.17  Aligned_cols=103  Identities=20%  Similarity=0.367  Sum_probs=85.1

Q ss_pred             cEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc--------------------
Q 026412           25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--------------------   84 (239)
Q Consensus        25 v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~--------------------   84 (239)
                      +..++++++......+++++|.||++||++|+.+.|.+.++.+.++   ++.++.|+++.                    
T Consensus        10 ~~~~~g~~~~l~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~   86 (136)
T 1zzo_A           10 AKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP---EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQL   86 (136)
T ss_dssp             EEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSCHHHHHHHHHHTTCTTSEEE
T ss_pred             cccCCCCEeeHHHhCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC---CeEEEEEeCCCCHHHHHHHHHHcCCCceEEE
Confidence            3445555554444467899999999999999999999999999986   68899998843                    


Q ss_pred             ---chhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412           85 ---YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus        85 ---~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                         +..++++|++.++|++++++++|+.. .+.|..+.+++.++|++.++
T Consensus        87 ~d~~~~~~~~~~i~~~P~~~~id~~g~i~-~~~g~~~~~~l~~~l~~~l~  135 (136)
T 1zzo_A           87 ADTDGSVWANFGVTQQPAYAFVDPHGNVD-VVRGRMSQDELTRRVTALTS  135 (136)
T ss_dssp             ECTTCHHHHHTTCCSSSEEEEECTTCCEE-EEESCCCHHHHHHHHHHHC-
T ss_pred             EcCCcHHHHHcCCCCCceEEEECCCCCEE-EEecCCCHHHHHHHHHHHhc
Confidence               56789999999999999998666666 88999999999999988753

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=99.69  E-value=2.3e-17  Score=125.49  Aligned_cols=98  Identities=18%  Similarity=0.299  Sum_probs=78.2

Q ss_pred             hhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchh-HHHHcCC--CCCCeEEEEeCCC
Q 026412           31 DNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD-LAEKYGV--SGFPTLKFFPKGN  107 (239)
Q Consensus        31 ~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~-l~~~~~i--~~~Pt~~~~~~g~  107 (239)
                      ++|.....++++++|.||++||++|+.+.|.+.++++.+..  ++.|+.||++.+.. ++.+|++  .++||+++|+.+|
T Consensus        37 ~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~--~~~~~~v~~d~~~~~~~~~~~~~~~~~Pt~~~~d~~G  114 (164)
T 1sen_A           37 DGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISEL--SHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSG  114 (164)
T ss_dssp             HHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHH--HTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTS
T ss_pred             HHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhc--CCeEEEEEecCCchHHHHHhcccCCcCCeEEEECCCC
Confidence            56776677789999999999999999999999998766532  35677788877666 7888998  5699999996555


Q ss_pred             cCccccCCC----------CCHHHHHHHHHHhh
Q 026412          108 KDGEEYGGG----------RDLEDFVSFINEKC  130 (239)
Q Consensus       108 ~~~~~~~g~----------~~~~~l~~~l~~~~  130 (239)
                      +...++.|.          .+.+++.++|++.+
T Consensus       115 ~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l  147 (164)
T 1sen_A          115 KVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQ  147 (164)
T ss_dssp             CBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCccchhcccCCHHHHHHHHHHHH
Confidence            666777774          78888888887754

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.68  E-value=3.1e-16  Score=146.16  Aligned_cols=109  Identities=27%  Similarity=0.506  Sum_probs=97.3

Q ss_pred             CCCcEEcChhhHHHHhcC---CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCC
Q 026412           22 ADDVVVLTEDNFEKEVGQ---DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP   98 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~---~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P   98 (239)
                      ...+..++.++|++.+..   ++.++|.||+|||+||+++.|.|+++++.+.  +++.|+.+||+.+..+|++|+|+++|
T Consensus       542 ~~~v~~l~~~~f~~~v~~~~~~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~--~~v~~~~vd~~~~~~l~~~~~v~~~P  619 (780)
T 3apo_A          542 NPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLT--GLINVGSVDCGQYHSFCTQENVQRYP  619 (780)
T ss_dssp             SCSEEECCHHHHHHHTTTCCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHT--TTSEEEEEETTTTHHHHHHTTCCSSS
T ss_pred             ccceeecCcccHHHHhhccCCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhh--CCeEEEEEECcchHHHHHHcCCCCCC
Confidence            367899999999999843   5678999999999999999999999999986  36999999999999999999999999


Q ss_pred             eEEEEeCCCc---CccccCC-CCCHHHHHHHHHHhhCC
Q 026412           99 TLKFFPKGNK---DGEEYGG-GRDLEDFVSFINEKCGT  132 (239)
Q Consensus        99 t~~~~~~g~~---~~~~~~g-~~~~~~l~~~l~~~~~~  132 (239)
                      ++++|+.|+.   .+..|.| .++.+.+.+|+.+...+
T Consensus       620 ti~~~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~~  657 (780)
T 3apo_A          620 EIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLPQ  657 (780)
T ss_dssp             EEEEECCCSSSCCSCEECCCSCCSHHHHHHHHHTTSCC
T ss_pred             eEEEEcCCCcCccchhhcCCCCCCHHHHHHHHhhhccc
Confidence            9999988754   3577899 89999999999988754

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.68  E-value=4.8e-16  Score=116.04  Aligned_cols=95  Identities=17%  Similarity=0.299  Sum_probs=82.3

Q ss_pred             cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc------------------------chhHHHHcC
Q 026412           38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK------------------------YKDLAEKYG   93 (239)
Q Consensus        38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~------------------------~~~l~~~~~   93 (239)
                      -++++++|.||++||++|+.+.|.+.++++.+. ..++.++.|++|.                        ...+++.|+
T Consensus        22 ~~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~-~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (151)
T 3raz_A           22 LKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQK-KGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYG  100 (151)
T ss_dssp             CCSSEEEEEEECTTCHHHHHHHHHHHHHHHTSC-TTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTT
T ss_pred             hCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhc-cCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhC
Confidence            367999999999999999999999999999985 3479999999863                        345778899


Q ss_pred             --CCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhCCC
Q 026412           94 --VSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTS  133 (239)
Q Consensus        94 --i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~  133 (239)
                        +.++|++++++++|+....+.|..+.+++.++|++.....
T Consensus       101 ~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~~~~  142 (151)
T 3raz_A          101 NTVGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAHSKC  142 (151)
T ss_dssp             CCSCCSSEEEEEETTTTEEEECCSCCCHHHHHHHHHHHHTC-
T ss_pred             CccCCCCEEEEECCCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence              9999999999887788889999999999999999887543

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.68  E-value=9.6e-17  Score=122.22  Aligned_cols=95  Identities=12%  Similarity=0.053  Sum_probs=75.6

Q ss_pred             EcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcC---CCCCCeEEE
Q 026412           27 VLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYG---VSGFPTLKF  102 (239)
Q Consensus        27 ~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~---i~~~Pt~~~  102 (239)
                      .++++.+..+. .++++++|.|||+|||+|+.+.|.++++++.++   ++.+..||.|++++++.+|.   +.++||+++
T Consensus        40 ~~~~~~~~~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~---~v~~~~v~~d~~~~~~~~~~~~~v~~iPt~i~  116 (167)
T 1z6n_A           40 GLPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP---NIELAIISKGRAEDDLRQRLALERIAIPLVLV  116 (167)
T ss_dssp             CCCHHHHHHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT---TEEEEEECHHHHHHHTTTTTTCSSCCSSEEEE
T ss_pred             CCCHHHHHHHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC---CcEEEEEECCCCHHHHHHHHHcCCCCcCeEEE
Confidence            45566666554 357899999999999999999999999998874   69999999999999999997   999999999


Q ss_pred             EeCCCcCccccCCCCCHHHHHHHH
Q 026412          103 FPKGNKDGEEYGGGRDLEDFVSFI  126 (239)
Q Consensus       103 ~~~g~~~~~~~~g~~~~~~l~~~l  126 (239)
                      +++||+...++ |.+. ..+.+.+
T Consensus       117 ~~~~G~~~~~~-g~~p-~~~~~~i  138 (167)
T 1z6n_A          117 LDEEFNLLGRF-VERP-QAVLDGG  138 (167)
T ss_dssp             ECTTCCEEEEE-ESSC-HHHHHHC
T ss_pred             ECCCCCEEEEE-cCCC-HHHHHhH
Confidence            99876665555 4433 3344443

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.67  E-value=3e-16  Score=118.50  Aligned_cols=109  Identities=18%  Similarity=0.387  Sum_probs=88.1

Q ss_pred             EEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHc-------------
Q 026412           26 VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKY-------------   92 (239)
Q Consensus        26 ~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~-------------   92 (239)
                      ..+++..+.-....+++++|.||++||++|+.+.|.+.++.+.++. .++.++.|+++...+..++|             
T Consensus        20 ~~~~g~~~~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~-~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~   98 (165)
T 3or5_A           20 VTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWAS-RGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMA   98 (165)
T ss_dssp             ECTTSCEEEGGGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTT-TTEEEEEEECSCCHHHHHHHHHHHTCCSCEEEC
T ss_pred             eCCCCCEechhHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhcc-CCeEEEEEECCCCHHHHHHHHHHcCCCCceEec
Confidence            3455555544334679999999999999999999999999999974 35999999998776666666             


Q ss_pred             --------------CCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhCCCCC
Q 026412           93 --------------GVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRD  135 (239)
Q Consensus        93 --------------~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~  135 (239)
                                    ++.++|++++++++|+....+.|..+.+++.++|++.++....
T Consensus        99 ~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~~~~  155 (165)
T 3or5_A           99 TPELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMALGAKAA  155 (165)
T ss_dssp             CHHHHHHHHTTSTTCSCSSSEEEEECTTSBEEEEECSCCCHHHHHHHHHHHHC----
T ss_pred             CHHHHHHHhhhhccCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHhhhcc
Confidence                          8999999999977778778889999999999999998875443

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.67  E-value=2.4e-16  Score=125.85  Aligned_cols=100  Identities=18%  Similarity=0.209  Sum_probs=83.9

Q ss_pred             hhHHHHh--cCCCcEEEEEE-----CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEE
Q 026412           31 DNFEKEV--GQDRGALVEFY-----APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF  103 (239)
Q Consensus        31 ~~f~~~~--~~~k~vlV~F~-----a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~  103 (239)
                      +.+.+.+  ...++++|.||     +|||+||+.+.|.|.+++..+...+.+.++.|||+.++++|++|+|+++||+++|
T Consensus         9 ~~l~~~~~~~~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~~   88 (229)
T 2ywm_A            9 MQLKELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVDRVPTIVIE   88 (229)
T ss_dssp             HHHHHHHHHHCCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHHHHHHTTCCBSSEEEEE
T ss_pred             HHHHHHHHHhccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHHHHHHcCCCcCcEEEEE
Confidence            4455555  34566666666     8999999999999999988874446799999999999999999999999999999


Q ss_pred             eCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412          104 PKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus       104 ~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      ++ +..+.+|.|.++.+++..|+....+
T Consensus        89 ~~-~~~~~~~~G~~~~~~l~~~~~~~~~  115 (229)
T 2ywm_A           89 GD-KDYGIRYIGLPAGLEFTTLINGIFH  115 (229)
T ss_dssp             SS-SCCCEEEESCCCTTHHHHHHHHHHH
T ss_pred             CC-CcccceecCCccHHHHHHHHHHHHh
Confidence            75 4677899999999999999988653

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.67  E-value=1.1e-16  Score=119.69  Aligned_cols=99  Identities=11%  Similarity=0.118  Sum_probs=70.3

Q ss_pred             hhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHH--ccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCc
Q 026412           31 DNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAA--FTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK  108 (239)
Q Consensus        31 ~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~--~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~  108 (239)
                      +.+.....++++++|.|||+||++|+.+.|.+.+..+.  +. +.+++.+.|| ++..+++.+|++.++||+++|+.+|+
T Consensus        35 ~al~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~-~~~fv~V~vD-~e~~~~~~~~~v~~~PT~~f~~~~G~  112 (151)
T 3ph9_A           35 EGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMA-QNKFIMLNLM-HETTDKNLSPDGQYVPRIMFVDPSLT  112 (151)
T ss_dssp             HHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHH-HHTCEEEEES-SCCSCGGGCTTCCCSSEEEEECTTSC
T ss_pred             HHHHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHh-hcCeEEEEec-CCchhhHhhcCCCCCCEEEEECCCCC
Confidence            34555557799999999999999999999998864321  11 1145555555 23456788999999999999985667


Q ss_pred             CccccCCC-------C---CHHHHHHHHHHhhC
Q 026412          109 DGEEYGGG-------R---DLEDFVSFINEKCG  131 (239)
Q Consensus       109 ~~~~~~g~-------~---~~~~l~~~l~~~~~  131 (239)
                      ...+..|.       .   +.+.+++.+++.+.
T Consensus       113 ~v~~~~G~~~~~~~~~~~~~~~~ll~~~~~al~  145 (151)
T 3ph9_A          113 VRADIAGRYSNRLYTYEPRDLPLLIENMKKALR  145 (151)
T ss_dssp             BCTTCCCSCTTSTTCCCGGGHHHHHHHHHHHHS
T ss_pred             EEEEEeCCcCCcccccchhhHHHHHHHHHHHHH
Confidence            77778887       3   44556666665543

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.66  E-value=8.8e-17  Score=121.45  Aligned_cols=107  Identities=16%  Similarity=0.273  Sum_probs=88.4

Q ss_pred             CcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEe----------------------
Q 026412           24 DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD----------------------   81 (239)
Q Consensus        24 ~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd----------------------   81 (239)
                      .+..++++.+.....++++++|.||++||++|+.+.|.+.++++.++.. ++.++.|+                      
T Consensus        22 ~l~~~~g~~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~  100 (164)
T 2h30_A           22 TMKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFS-SANLITVASPGFLHEKKDGEFQKWYAGLNY  100 (164)
T ss_dssp             TCEETTSSBGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGT-TSEEEEEECTTSTTCCCTTHHHHHHTTSCC
T ss_pred             ccCCCCCCEeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC-CcEEEEEEcCCCccccCHHHHHHHHHhCCC
Confidence            6777888877766667899999999999999999999999999887533 35555554                      


Q ss_pred             ------CccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412           82 ------ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus        82 ------~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                            ++.+.+++++|+|.++|++++++++|+....+.|..+.+++.++|++...
T Consensus       101 ~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~~~  156 (164)
T 2h30_A          101 PKLPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRNPNA  156 (164)
T ss_dssp             TTSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTTC
T ss_pred             CcceEEEcCchHHHHHcCCCccceEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence                  33456899999999999999997766777788899999999999998764

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.66  E-value=3.7e-16  Score=124.40  Aligned_cols=98  Identities=20%  Similarity=0.340  Sum_probs=82.7

Q ss_pred             hhhHHHHh---cCCCcEEEEEECC-CChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc--chhHHHHcCCCCCCeEEEE
Q 026412           30 EDNFEKEV---GQDRGALVEFYAP-WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--YKDLAEKYGVSGFPTLKFF  103 (239)
Q Consensus        30 ~~~f~~~~---~~~k~vlV~F~a~-wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~~~~  103 (239)
                      .+.+.+.+   .++..++|.||++ ||++|+.+.|.++++++..   +++.++.||+++  +++++++|+|.++||+++|
T Consensus         9 ~~~~~~~~~~~~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~~---~~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~   85 (226)
T 1a8l_A            9 KKVIKEEFFSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSELT---DKLSYEIVDFDTPEGKELAKRYRIDRAPATTIT   85 (226)
T ss_dssp             HHHHHHHTGGGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTTC---TTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEE
T ss_pred             HHHHHHHHHHhcCCCeEEEEEecCCCCchhHHHHHHHHHHHhhC---CceEEEEEeCCCcccHHHHHHcCCCcCceEEEE
Confidence            34566666   2345678999999 9999999999999998652   479999999999  9999999999999999999


Q ss_pred             eCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412          104 PKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus       104 ~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      ++|.....+|.|.++.+++.+|+....
T Consensus        86 ~~g~~~~~~~~G~~~~~~l~~~l~~~l  112 (226)
T 1a8l_A           86 QDGKDFGVRYFGLPAGHEFAAFLEDIV  112 (226)
T ss_dssp             ETTBCCSEEEESCCCTTHHHHHHHHHH
T ss_pred             cCCceeeEEEeccCcHHHHHHHHHHHH
Confidence            887544578999999999999998754

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.65  E-value=9e-16  Score=113.13  Aligned_cols=87  Identities=17%  Similarity=0.380  Sum_probs=77.7

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-------------------------chhHHHHcC
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------------------------YKDLAEKYG   93 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~~   93 (239)
                      .+++++|.||++||++|+.+.|.+.++.+.++. .++.++.|+++.                         +..++++|+
T Consensus        33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  111 (145)
T 3erw_A           33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPS-DSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYH  111 (145)
T ss_dssp             TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCC-SSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCC-CCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcC
Confidence            788999999999999999999999999999864 369999998864                         568999999


Q ss_pred             CCCCCeEEEEeCCCcCccccCCCCCHHHHHHHH
Q 026412           94 VSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI  126 (239)
Q Consensus        94 i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l  126 (239)
                      +.++|++++++++|+....+.|..+.+++.++|
T Consensus       112 v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l  144 (145)
T 3erw_A          112 IITIPTSFLLNEKGEIEKTKIGPMTAEQLKEWT  144 (145)
T ss_dssp             CCEESEEEEECTTCCEEEEEESCCCHHHHHHHH
T ss_pred             cCccCeEEEEcCCCcEEEEEcCCcCHHHHHHhh
Confidence            999999999977777778889999999999887

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=99.64  E-value=1.3e-15  Score=116.27  Aligned_cols=84  Identities=24%  Similarity=0.436  Sum_probs=70.8

Q ss_pred             CcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHH-H--HHHHHHccCCCCeEEEEEeCccchhHHHHc--------
Q 026412           24 DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPT-Y--EKVAAAFTLEDDVVVANLDADKYKDLAEKY--------   92 (239)
Q Consensus        24 ~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~-~--~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~--------   92 (239)
                      .+...+++.|.....++++|+|.||++||++|+.|.|. |  .++++.+.  +++++++||.++++++.+.|        
T Consensus        23 ~W~~~~~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~--~~fv~ikVD~de~~~l~~~y~~~~q~~~  100 (173)
T 3ira_A           23 DWYPWGEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMN--EAFVSIKVDREERPDIDNIYMTVCQIIL  100 (173)
T ss_dssp             CCBCSSHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHH--HHCEEEEEETTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHH--hcCceeeeCCcccCcHHHHHHHHHHHHc
Confidence            45556688999988889999999999999999999994 3  46666654  36899999999999999998        


Q ss_pred             CCCCCCeEEEEeCCCcC
Q 026412           93 GVSGFPTLKFFPKGNKD  109 (239)
Q Consensus        93 ~i~~~Pt~~~~~~g~~~  109 (239)
                      ++.++|++++++++|+.
T Consensus       101 gv~g~Pt~v~l~~dG~~  117 (173)
T 3ira_A          101 GRGGWPLNIIMTPGKKP  117 (173)
T ss_dssp             SCCCSSEEEEECTTSCE
T ss_pred             CCCCCcceeeECCCCCc
Confidence            99999999999866554

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.64  E-value=1.5e-15  Score=113.11  Aligned_cols=97  Identities=19%  Similarity=0.363  Sum_probs=84.0

Q ss_pred             cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch-----------------------hHHHHcCC
Q 026412           38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-----------------------DLAEKYGV   94 (239)
Q Consensus        38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~-----------------------~l~~~~~i   94 (239)
                      ..+++++|.||++||++|+.+.|.+.++.+.++. .++.++.|+++...                       .+++.|++
T Consensus        28 ~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  106 (152)
T 2lja_A           28 LKGKYIYIDVWATWCGPCRGELPALKELEEKYAG-KDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLI  106 (152)
T ss_dssp             TTTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTT-SSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTC
T ss_pred             cCCCEEEEEEECCcCHhHHHHhHHHHHHHHHhcc-CCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCc
Confidence            3578999999999999999999999999999863 36999999988654                       78999999


Q ss_pred             CCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhCCCCC
Q 026412           95 SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRD  135 (239)
Q Consensus        95 ~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~  135 (239)
                      .++|++++++++|+....+.|..+.+++.++|++..+.+..
T Consensus       107 ~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~~~  147 (152)
T 2lja_A          107 NGIPRFILLDRDGKIISANMTRPSDPKTAEKFNELLGLEGH  147 (152)
T ss_dssp             CSSCCEEEECTTSCEEESSCCCTTCHHHHHHHHHHHTCCSS
T ss_pred             CCCCEEEEECCCCeEEEccCCCCCHHHHHHHHHHHhccccc
Confidence            99999999986667777888989999999999998875543

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.64  E-value=1.2e-15  Score=113.75  Aligned_cols=95  Identities=18%  Similarity=0.338  Sum_probs=81.7

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----------------------chhHHHHcCCCC
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------YKDLAEKYGVSG   96 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----------------------~~~l~~~~~i~~   96 (239)
                      .+++++|.||++||++|+.+.|.+.++.+.++. .++.++.|+++.                      +..+++.|++.+
T Consensus        25 ~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~-~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  103 (151)
T 2f9s_A           25 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKS-QGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSP  103 (151)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG-GTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcc-CCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCC
Confidence            578999999999999999999999999999864 358888888864                      357899999999


Q ss_pred             CCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhCCCC
Q 026412           97 FPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSR  134 (239)
Q Consensus        97 ~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~  134 (239)
                      +|++++++++|+....+.|..+.+++.++|++.+....
T Consensus       104 ~P~~~lid~~G~i~~~~~G~~~~~~l~~~l~~ll~~~~  141 (151)
T 2f9s_A          104 LPTTFLINPEGKVVKVVTGTMTESMIHDYMNLIKPGET  141 (151)
T ss_dssp             SCEEEEECTTSEEEEEEESCCCHHHHHHHHHHHSCC--
T ss_pred             CCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHhhhh
Confidence            99999997776777788899999999999999876443

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.63  E-value=2.7e-15  Score=112.71  Aligned_cols=104  Identities=17%  Similarity=0.241  Sum_probs=84.7

Q ss_pred             cChhhHHHHhcCCCcEEEEEECCCChHHhh-HhHHHHHHHHHccCCCCeEEEEEeC------------------------
Q 026412           28 LTEDNFEKEVGQDRGALVEFYAPWCGHCKN-LAPTYEKVAAAFTLEDDVVVANLDA------------------------   82 (239)
Q Consensus        28 l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~-~~~~~~~~a~~~~~~~~v~~~~vd~------------------------   82 (239)
                      ++++.+.-.--.+++++|.||++||++|+. +.|.+.++.+.++.. ++.++.|++                        
T Consensus        18 ~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (160)
T 3lor_A           18 VNHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDES-QVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKF   96 (160)
T ss_dssp             SSSCCCCHHHHTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTT-TEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCS
T ss_pred             cCCCccCHHHhCCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcC-CcEEEEEeccccccccCCHHHHHHHHHHcCCCC
Confidence            444444332235799999999999999999 699999999999744 588998876                        


Q ss_pred             ----ccchh------HHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhCC
Q 026412           83 ----DKYKD------LAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGT  132 (239)
Q Consensus        83 ----~~~~~------l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~  132 (239)
                          +....      +++.|++.++|++++++++|+....+.|..+.+.+.++|++.+..
T Consensus        97 ~~~~d~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~  156 (160)
T 3lor_A           97 PVAVDMPREGQRIPSTMKKYRLEGTPSIILADRKGRIRQVQFGQVDDFVLGLLLGSLLSE  156 (160)
T ss_dssp             CEEEECCCTTCSSCHHHHHTTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHHHHHHHTC
T ss_pred             cEEECCccccchhhhHHHhcccCccceEEEECCCCcEEEEecCcCCHHHHHHHHHHHHhc
Confidence                22233      899999999999999987778888889999999999999988753

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.62  E-value=3.4e-15  Score=112.04  Aligned_cols=94  Identities=21%  Similarity=0.217  Sum_probs=80.7

Q ss_pred             cCCCcEEEEEECCCChHHhhH-hHHHHHHHHHccCCCCeEEEEEeCc----------------------------cch--
Q 026412           38 GQDRGALVEFYAPWCGHCKNL-APTYEKVAAAFTLEDDVVVANLDAD----------------------------KYK--   86 (239)
Q Consensus        38 ~~~k~vlV~F~a~wC~~C~~~-~~~~~~~a~~~~~~~~v~~~~vd~~----------------------------~~~--   86 (239)
                      -.+++++|.||++||++|+.. .|.+.++.+.++.. ++.++.|+++                            ...  
T Consensus        26 ~~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  104 (158)
T 3eyt_A           26 LRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPED-KVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDG  104 (158)
T ss_dssp             GTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTT-TEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSS
T ss_pred             hCCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcC-CEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccch
Confidence            357999999999999999996 99999999999743 6889888853                            122  


Q ss_pred             ---hHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhCC
Q 026412           87 ---DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGT  132 (239)
Q Consensus        87 ---~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~  132 (239)
                         .+++.|++.++|++++++++|+....+.|..+.+++.++|++.+..
T Consensus       105 ~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~  153 (158)
T 3eyt_A          105 AMPRTMAAYQMRGTPSLLLIDKAGDLRAHHFGDVSELLLGAEIATLLGE  153 (158)
T ss_dssp             SSCHHHHHTTCCSSSEEEEECTTSEEEEEEESCCCHHHHHHHHHHHHTS
T ss_pred             hhHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHhcc
Confidence               5899999999999999987778888889999999999999998764

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.61  E-value=2.4e-15  Score=112.15  Aligned_cols=96  Identities=22%  Similarity=0.338  Sum_probs=81.3

Q ss_pred             cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeC-----------------------ccchhHHHHcCC
Q 026412           38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA-----------------------DKYKDLAEKYGV   94 (239)
Q Consensus        38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~-----------------------~~~~~l~~~~~i   94 (239)
                      ..+++++|.||++||++|+.+.|.+.++.+.++.. ++.++.|+.                       +.+..+++.|++
T Consensus        26 ~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i  104 (153)
T 2l5o_A           26 LQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNK-NFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGT  104 (153)
T ss_dssp             HTTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGT-TEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTC
T ss_pred             hCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccC-CeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcCC
Confidence            36789999999999999999999999999998743 577776653                       345679999999


Q ss_pred             CCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhCCCC
Q 026412           95 SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSR  134 (239)
Q Consensus        95 ~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~  134 (239)
                      .++|++++++++|+....+.|..+.+.+.++|++.+....
T Consensus       105 ~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~~~  144 (153)
T 2l5o_A          105 QVYPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTAWRNSD  144 (153)
T ss_dssp             CSSSEEEEECSSSCCCEEEESSCCHHHHHHHHHHHHHCCS
T ss_pred             CccCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHHhhh
Confidence            9999999997776777788999999999999998876443

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.61  E-value=8.4e-16  Score=113.78  Aligned_cols=103  Identities=17%  Similarity=0.189  Sum_probs=83.3

Q ss_pred             EcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchh-------------------
Q 026412           27 VLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD-------------------   87 (239)
Q Consensus        27 ~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~-------------------   87 (239)
                      .+++..+.-.-..+++++|.||++||++|+.+.|.+.++.+.++.. ++.++.|+++...+                   
T Consensus        18 ~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d   96 (148)
T 3hcz_A           18 DTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAK-GIQVYAANIERKDEEWLKFIRSKKIGGWLNVRD   96 (148)
T ss_dssp             CTTSCBCCGGGCCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGG-TEEEEEEECCSSSHHHHHHHHHHTCTTSEEEEC
T ss_pred             cCCCCEEEhHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccC-CEEEEEEEecCCHHHHHHHHHHcCCCCceEEec
Confidence            3444433322246789999999999999999999999999999743 59999999986665                   


Q ss_pred             ------HHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412           88 ------LAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus        88 ------l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                            +++.|++.++|++++++++|+....+.|..+.+++.+.+.+.+
T Consensus        97 ~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~l~~l~~~l  145 (148)
T 3hcz_A           97 SKNHTDFKITYDIYATPVLYVLDKNKVIIAKRIGYENLDDFLVQYEKSL  145 (148)
T ss_dssp             TTCCCCHHHHHCCCSSCEEEEECTTCBEEEESCCGGGHHHHHHHHHHHH
T ss_pred             cccchhHHHhcCcCCCCEEEEECCCCcEEEecCCHHHHHHHHHHHHHHh
Confidence                  9999999999999999777787788888877888877776543

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=99.61  E-value=2.2e-15  Score=99.40  Aligned_cols=74  Identities=16%  Similarity=0.298  Sum_probs=62.4

Q ss_pred             EEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCC-CHHH
Q 026412           43 ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGR-DLED  121 (239)
Q Consensus        43 vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~-~~~~  121 (239)
                      ..|.||++||++|+.+.|.++++++.+.  .++.++.||   +.+++++|+|.++||+++  +| +....  |.. +.++
T Consensus         2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~--~~~~~~~v~---~~~~~~~~~v~~~Pt~~~--~G-~~~~~--G~~~~~~~   71 (77)
T 1ilo_A            2 MKIQIYGTGCANCQMLEKNAREAVKELG--IDAEFEKIK---EMDQILEAGLTALPGLAV--DG-ELKIM--GRVASKEE   71 (77)
T ss_dssp             EEEEEECSSSSTTHHHHHHHHHHHHHTT--CCEEEEEEC---SHHHHHHHTCSSSSCEEE--TT-EEEEC--SSCCCHHH
T ss_pred             cEEEEEcCCChhHHHHHHHHHHHHHHcC--CceEEEEec---CHHHHHHCCCCcCCEEEE--CC-EEEEc--CCCCCHHH
Confidence            3589999999999999999999999875  468888888   678999999999999988  54 43333  886 8999


Q ss_pred             HHHHH
Q 026412          122 FVSFI  126 (239)
Q Consensus       122 l~~~l  126 (239)
                      +.+++
T Consensus        72 l~~~l   76 (77)
T 1ilo_A           72 IKKIL   76 (77)
T ss_dssp             HHHHC
T ss_pred             HHHHh
Confidence            98875

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.61  E-value=2.7e-15  Score=112.12  Aligned_cols=91  Identities=21%  Similarity=0.339  Sum_probs=79.5

Q ss_pred             CcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeC---------------------------ccchhHHHHcC
Q 026412           41 RGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA---------------------------DKYKDLAEKYG   93 (239)
Q Consensus        41 k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~---------------------------~~~~~l~~~~~   93 (239)
                      ++++|.||++||++|+.+.|.+.++.+.+    ++.++.|++                           +....+++.|+
T Consensus        31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~----~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  106 (154)
T 3ia1_A           31 KPAVIVFWASWCTVCKAEFPGLHRVAEET----GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFK  106 (154)
T ss_dssp             SSEEEEEECTTCHHHHHHHHHHHHHHHHH----CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSS
T ss_pred             CeEEEEEEcccChhHHHHHHHHHHHHHHc----CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhC
Confidence            89999999999999999999999999998    577888887                           35678899999


Q ss_pred             CCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhCCCCC
Q 026412           94 VSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSRD  135 (239)
Q Consensus        94 i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~  135 (239)
                      +.++|++++++++|+....+.|..+.+++.++|++..+....
T Consensus       107 v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~~~  148 (154)
T 3ia1_A          107 VLGQPWTFVVDREGKVVALFAGRAGREALLDALLLAGADLEG  148 (154)
T ss_dssp             BCSSCEEEEECTTSEEEEEEESBCCHHHHHHHHHHTTCCC--
T ss_pred             CCcccEEEEECCCCCEEEEEcCCCCHHHHHHHHHhccCcccc
Confidence            999999999977778788889999999999999998765443

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.60  E-value=4.2e-15  Score=109.99  Aligned_cols=90  Identities=16%  Similarity=0.279  Sum_probs=75.1

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-------------------------chhHHHHcC
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------------------------YKDLAEKYG   93 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~~   93 (239)
                      ++++++|.||++||++|+.+.|.+.++.+.++.+.++.++.|+++.                         +..+++.|+
T Consensus        32 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  111 (148)
T 3fkf_A           32 RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYA  111 (148)
T ss_dssp             TTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTT
T ss_pred             CCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcC
Confidence            6789999999999999999999999999998334469999998875                         448899999


Q ss_pred             CCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412           94 VSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus        94 i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      +.++|++++++++|+....+.   +.+.+.++|++.+.
T Consensus       112 v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~~ll~  146 (148)
T 3fkf_A          112 ILTLPTNILLSPTGKILARDI---QGEALTGKLKELLK  146 (148)
T ss_dssp             CCSSSEEEEECTTSBEEEESC---CHHHHHHHHHHHC-
T ss_pred             CCCcCEEEEECCCCeEEEecC---CHHHHHHHHHHHHc
Confidence            999999999976666555444   88999999987653

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.60  E-value=3.8e-15  Score=108.38  Aligned_cols=90  Identities=27%  Similarity=0.456  Sum_probs=77.0

Q ss_pred             cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeC----------------------------ccchhHH
Q 026412           38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA----------------------------DKYKDLA   89 (239)
Q Consensus        38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~----------------------------~~~~~l~   89 (239)
                      .++++++|.||++||++|+.+.|.+.++.+.++  .++.++.|++                            +.+..++
T Consensus        20 ~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   97 (138)
T 4evm_A           20 YKGKKVYLKFWASWCSICLASLPDTDEIAKEAG--DDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLL   97 (138)
T ss_dssp             GTTSEEEEEECCTTCHHHHHHHHHHHHHHHTCT--TTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHH
T ss_pred             hCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhC--CCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHH
Confidence            367899999999999999999999999999854  4688888843                            3345789


Q ss_pred             HHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHh
Q 026412           90 EKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus        90 ~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~  129 (239)
                      ++|++.++|++++++++|+....+.|..+.+++.++|++.
T Consensus        98 ~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l  137 (138)
T 4evm_A           98 ETYGVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKEL  137 (138)
T ss_dssp             HHTTCCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred             HHcCcccCCeEEEECCCCcEEEeecCCCcHHHHHHHHHhh
Confidence            9999999999999977777778889999999999998763

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.59  E-value=8.2e-15  Score=109.13  Aligned_cols=96  Identities=23%  Similarity=0.390  Sum_probs=79.6

Q ss_pred             cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch----------------------hHHHHcCCC
Q 026412           38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----------------------DLAEKYGVS   95 (239)
Q Consensus        38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~----------------------~l~~~~~i~   95 (239)
                      ..+++++|.||++||++|+.+.|.+.++.+.++.. ++.++.|+++...                      .+++.|++.
T Consensus        26 ~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  104 (152)
T 3gl3_A           26 KTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAK-GFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVK  104 (152)
T ss_dssp             GTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGG-TEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCC
T ss_pred             hCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC-CeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCC
Confidence            36789999999999999999999999999998743 4888889887544                      688899999


Q ss_pred             CCCeEEEEeCCCcCccccCCC--CCHHHHHHHHHHhhCCCC
Q 026412           96 GFPTLKFFPKGNKDGEEYGGG--RDLEDFVSFINEKCGTSR  134 (239)
Q Consensus        96 ~~Pt~~~~~~g~~~~~~~~g~--~~~~~l~~~l~~~~~~~~  134 (239)
                      ++|++++++++|+....+.|.  .+.+++.++|++..+...
T Consensus       105 ~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~~~~~  145 (152)
T 3gl3_A          105 GMPTSFLIDRNGKVLLQHVGFRPADKEALEQQILAALGGNE  145 (152)
T ss_dssp             SSSEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHTC---
T ss_pred             CCCeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHHcccc
Confidence            999999997777777777775  456899999999876544

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.58  E-value=1.2e-14  Score=108.59  Aligned_cols=92  Identities=21%  Similarity=0.361  Sum_probs=76.3

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-------------------------chhHHHHcC
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------------------------YKDLAEKYG   93 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~~   93 (239)
                      .+++++|.||++||++|+.+.|.+.++.+.+.. .++.++.|+++.                         +..+++.|+
T Consensus        28 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~-~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  106 (152)
T 2lrn_A           28 KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKD-KGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYC  106 (152)
T ss_dssp             TTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTT-TTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTT
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhcc-CCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhC
Confidence            578999999999999999999999999999874 359999999886                         578999999


Q ss_pred             CCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhCCCC
Q 026412           94 VSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSR  134 (239)
Q Consensus        94 i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~  134 (239)
                      +.++|++++++++|+....+.   +.+++.++|++..+...
T Consensus       107 v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~~l~~~~~  144 (152)
T 2lrn_A          107 IVGFPHIILVDPEGKIVAKEL---RGDDLYNTVEKFVNGAK  144 (152)
T ss_dssp             CCSSCEEEEECTTSEEEEECC---CTTHHHHHHHHHHTSSS
T ss_pred             CCcCCeEEEECCCCeEEEeeC---CHHHHHHHHHHHHhhcc
Confidence            999999999976666655553   45678888887766443

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.58  E-value=5.1e-15  Score=111.32  Aligned_cols=105  Identities=23%  Similarity=0.479  Sum_probs=83.6

Q ss_pred             cChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-------------------chhH
Q 026412           28 LTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------------------YKDL   88 (239)
Q Consensus        28 l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-------------------~~~l   88 (239)
                      +++..+.-.-.++++++|.||++||++|+.+.|.+.++.+.++. .++.++.|+++.                   +..+
T Consensus        29 ~~g~~~~l~~~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~  107 (158)
T 3hdc_A           29 LSGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPK-GDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQV  107 (158)
T ss_dssp             TTSCEEESGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHSST-TSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHH
T ss_pred             CCCCEEehHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHccc-CCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHH
Confidence            44443332223678999999999999999999999999999974 469999999876                   6789


Q ss_pred             HHHcCCCCCCeEEEEeCCCcCccccCCC--CCHHHHHHHHHHhhCCC
Q 026412           89 AEKYGVSGFPTLKFFPKGNKDGEEYGGG--RDLEDFVSFINEKCGTS  133 (239)
Q Consensus        89 ~~~~~i~~~Pt~~~~~~g~~~~~~~~g~--~~~~~l~~~l~~~~~~~  133 (239)
                      ++.|++.++|++++++++|+....+.|.  .+.+++.+.+++..+++
T Consensus       108 ~~~~~v~~~P~~~lid~~G~i~~~~~G~~~~~~~~~~~~~~~~~~~~  154 (158)
T 3hdc_A          108 QQRYGANRLPDTFIVDRKGIIRQRVTGGIEWDAPKVVSYLKSLEGHH  154 (158)
T ss_dssp             HHHTTCCSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTTC---
T ss_pred             HHHhCCCCcceEEEEcCCCCEEEEEeCCCccchHHHHHHHHhhcccc
Confidence            9999999999999998777877788875  56788888888766543

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.57  E-value=6.4e-15  Score=111.79  Aligned_cols=97  Identities=18%  Similarity=0.275  Sum_probs=77.9

Q ss_pred             ChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEe-----------------------Ccc
Q 026412           29 TEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD-----------------------ADK   84 (239)
Q Consensus        29 ~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd-----------------------~~~   84 (239)
                      ++..+.... .++++++|.||++||++|+.+.|.+.++.+.     ++.++.|+                       ++.
T Consensus        39 ~g~~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~-----~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~  113 (168)
T 2b1k_A           39 PGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDG  113 (168)
T ss_dssp             TTCEEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT-----TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEET
T ss_pred             CCcEeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC-----CCEEEEEECCCChHHHHHHHHHcCCCCceeeECc
Confidence            455554333 5789999999999999999999999999875     46666666                       345


Q ss_pred             chhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412           85 YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus        85 ~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      +..++++|+|.++|+++++.++|+....+.|..+.+.+.++|++.+
T Consensus       114 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l  159 (168)
T 2b1k_A          114 DGMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLW  159 (168)
T ss_dssp             TCHHHHHHTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHTTHHHH
T ss_pred             chHHHHHcCccccCEEEEECCCCeEEEEEeCCCCHHHHHHHHHHHH
Confidence            5678999999999988888766677778889999999999887654

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.57  E-value=1.1e-14  Score=110.19  Aligned_cols=102  Identities=17%  Similarity=0.295  Sum_probs=81.7

Q ss_pred             CcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc------------------cc
Q 026412           24 DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD------------------KY   85 (239)
Q Consensus        24 ~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~------------------~~   85 (239)
                      .+..++...+.-.-.++++++|.||++||++|+.+.|.+.++.+.++   ++.++.|+++                  ..
T Consensus        21 ~l~~~~g~~~~l~~~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~---~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~   97 (165)
T 3ha9_A           21 SLTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR---EISVIAIDFWTAEALKALGLNKPGYPPPDT   97 (165)
T ss_dssp             CEEBTTSCEECGGGCCSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT---TEEEEEEECCSHHHHHHHTCCSTTSCCCCC
T ss_pred             EeecCCCCEeeHHHhCCCEEEEEEECCCCcchhhhHHHHHHHHHHcC---CcEEEEEEecccccccccccccccCCCCCC
Confidence            34445555443322467999999999999999999999999999986   7999999887                  33


Q ss_pred             ----------------------hhHHHHcCCCCCCeEEEEeCCCcCccccCCCC-CHHHHHHHHHHhh
Q 026412           86 ----------------------KDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGR-DLEDFVSFINEKC  130 (239)
Q Consensus        86 ----------------------~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~-~~~~l~~~l~~~~  130 (239)
                                            ..+++.|+|.++|++++++++|+...  .|.. +.+.+.++|++..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~v~~~P~~~lid~~G~i~~--~g~~~~~~~l~~~l~~l~  163 (165)
T 3ha9_A           98 PEMFRKFIANYGDPSWIMVMDDGSLVEKFNVRSIDYIVIMDKSSNVLY--AGTTPSLGELESVIKSVQ  163 (165)
T ss_dssp             HHHHHHHHHHHSCTTSEEEECCSHHHHHTTCCSSSEEEEEETTCCEEE--EEESCCHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHcCCCCeeEEeChHHHHHHhCCCCceEEEEEcCCCcEEE--eCCCCCHHHHHHHHHHHh
Confidence                                  37889999999999999987766544  7877 9999999998764

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.56  E-value=6e-15  Score=110.28  Aligned_cols=96  Identities=15%  Similarity=0.273  Sum_probs=77.7

Q ss_pred             hhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc-----------------------cchh
Q 026412           31 DNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-----------------------KYKD   87 (239)
Q Consensus        31 ~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~-----------------------~~~~   87 (239)
                      +.+....-.+++++|.||++||++|+.+.|.+.++.+.    +++.++.|+++                       .+..
T Consensus        33 ~~~~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~----~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  108 (156)
T 1kng_A           33 PGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKD----KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGR  108 (156)
T ss_dssp             CCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTC----TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSH
T ss_pred             ceechHHhCCCEEEEEEEcccCHhHHHHHHHHHHHHhc----CCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhH
Confidence            44544444588999999999999999999999988765    35888887753                       3457


Q ss_pred             HHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412           88 LAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus        88 l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      +++.|++.++|+++++.++|+....+.|..+.+.+.++|++.+
T Consensus       109 ~~~~~~v~~~P~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l  151 (156)
T 1kng_A          109 ASIEWGVYGVPETFVVGREGTIVYKLVGPITPDNLRSVLLPQM  151 (156)
T ss_dssp             HHHHTTCCSSCEEEEECTTSBEEEEEESCCCHHHHHHTHHHHH
T ss_pred             HHHhcCcCccCeEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHH
Confidence            8899999999988888766677778889999999999988764

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.56  E-value=8.7e-15  Score=109.23  Aligned_cols=96  Identities=21%  Similarity=0.416  Sum_probs=77.9

Q ss_pred             cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc-----------------------hhHHHHcCC
Q 026412           38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-----------------------KDLAEKYGV   94 (239)
Q Consensus        38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~i   94 (239)
                      ..+++++|.||++||++|+.+.|.+.++.+.++. .++.++.|+++.+                       ..+++.|++
T Consensus        26 ~~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  104 (154)
T 3kcm_A           26 LKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAG-KPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGT  104 (154)
T ss_dssp             GTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-SSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTC
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcc-CCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCC
Confidence            3679999999999999999999999999999974 3688888888764                       348899999


Q ss_pred             CCCCeEEEEeCCCcCccccCCCC--CHHHHHHHHHHhhCCCC
Q 026412           95 SGFPTLKFFPKGNKDGEEYGGGR--DLEDFVSFINEKCGTSR  134 (239)
Q Consensus        95 ~~~Pt~~~~~~g~~~~~~~~g~~--~~~~l~~~l~~~~~~~~  134 (239)
                      .++|+++++.++|+....+.|..  +.+++.++|++..+...
T Consensus       105 ~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l~~~~~  146 (154)
T 3kcm_A          105 TGVPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNELSKAR  146 (154)
T ss_dssp             CSBCEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC-----
T ss_pred             CCCCeEEEECCCCcEEEEEcCCCccccHHHHHHHHHHHHHhh
Confidence            99999888877777777777864  77899999988765443

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.55  E-value=1.4e-14  Score=106.71  Aligned_cols=89  Identities=12%  Similarity=0.330  Sum_probs=71.1

Q ss_pred             cCCCcEEEEEECCCChHHhhHhHHHHH---HHHHccCCCCeEEEEEeCccchhH------------------------HH
Q 026412           38 GQDRGALVEFYAPWCGHCKNLAPTYEK---VAAAFTLEDDVVVANLDADKYKDL------------------------AE   90 (239)
Q Consensus        38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~---~a~~~~~~~~v~~~~vd~~~~~~l------------------------~~   90 (239)
                      -.+++++|.||++||++|+.+.|.+.+   +.+.++. .++.++.|+++...+.                        ++
T Consensus        25 ~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~-~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  103 (142)
T 3ewl_A           25 LKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVEN-GTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQ  103 (142)
T ss_dssp             CCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHH-TSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTT
T ss_pred             cCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhcc-CCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHH
Confidence            357999999999999999999999988   8888763 3699999988855432                        34


Q ss_pred             HcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412           91 KYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus        91 ~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      .|+|.++|++++++++|+...   +..+.+++.++|++..
T Consensus       104 ~~~v~~~P~~~lid~~G~i~~---~~~~~~~l~~~l~~~~  140 (142)
T 3ewl_A          104 LYDIRATPTIYLLDGRKRVIL---KDTSMEQLIDYLATQA  140 (142)
T ss_dssp             CSCCCSSSEEEEECTTCBEEE---CSCCHHHHHHHHHC--
T ss_pred             HcCCCCCCeEEEECCCCCEEe---cCCCHHHHHHHHHHHc
Confidence            899999999999976655432   5678999999998754

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.55  E-value=2.9e-14  Score=109.72  Aligned_cols=92  Identities=12%  Similarity=0.278  Sum_probs=77.7

Q ss_pred             cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCe------EEEEEeCcc-chhHHHHc------------------
Q 026412           38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDV------VVANLDADK-YKDLAEKY------------------   92 (239)
Q Consensus        38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v------~~~~vd~~~-~~~l~~~~------------------   92 (239)
                      -++++++|.||++||++|+.+.|.+.++.+.++.. ++      .++.|+++. .++..++|                  
T Consensus        57 ~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~-~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~  135 (183)
T 3lwa_A           57 FENQVVILNAWGQWCAPCRSESDDLQIIHEELQAA-GNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMT  135 (183)
T ss_dssp             GTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHC-C---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCGG
T ss_pred             hCCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhc-CCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcchH
Confidence            46789999999999999999999999999998643 35      999999987 56555555                  


Q ss_pred             -------CCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412           93 -------GVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus        93 -------~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                             ++.++|+++++.++|+....+.|..+.+++.++|++.+
T Consensus       136 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll  180 (183)
T 3lwa_A          136 AASLGGVPASVIPTTIVLDKQHRPAAVFLREVTSKDVLDVALPLV  180 (183)
T ss_dssp             GGGTTTCCTTCCSEEEEECTTSCEEEEECSCCCHHHHHHHHHHHH
T ss_pred             HHHhccCCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence                   68899998888777787788899999999999998765

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.55  E-value=1.7e-14  Score=106.37  Aligned_cols=85  Identities=15%  Similarity=0.235  Sum_probs=70.2

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHH---HHHHccCCCCeEEEEEeCccchh------------------------HHHH
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEK---VAAAFTLEDDVVVANLDADKYKD------------------------LAEK   91 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~---~a~~~~~~~~v~~~~vd~~~~~~------------------------l~~~   91 (239)
                      .+++++|.||++||++|+.+.|.+.+   +.+.++. .++.++.|+.+...+                        +++.
T Consensus        30 ~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~-~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  108 (142)
T 3eur_A           30 PAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAA-KKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNL  108 (142)
T ss_dssp             CCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHT-TSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhcc-CCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhh
Confidence            46999999999999999999999999   9998864 469999998876532                        4778


Q ss_pred             cCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHH
Q 026412           92 YGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN  127 (239)
Q Consensus        92 ~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~  127 (239)
                      |++.++|++++++++|+...+..   +.+++.+||+
T Consensus       109 ~~v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~  141 (142)
T 3eur_A          109 YDLRAIPTLYLLDKNKTVLLKDA---TLQKVEQYLA  141 (142)
T ss_dssp             SCCTTCSEEEEECTTCBEEEEEE---CHHHHHHHHH
T ss_pred             cCCCcCCeEEEECCCCcEEecCC---CHHHHHHHHh
Confidence            99999999999987766554433   5788888875

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.54  E-value=1.1e-13  Score=117.69  Aligned_cols=108  Identities=15%  Similarity=0.246  Sum_probs=93.2

Q ss_pred             cCCCcEEcChhhHHHHhcC-CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc--cchhHHHHcCCCC-
Q 026412           21 LADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD--KYKDLAEKYGVSG-   96 (239)
Q Consensus        21 ~~~~v~~l~~~~f~~~~~~-~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~~-   96 (239)
                      ....+.+++.+++.+...+ .++++|.||++||++|+++.|.|.++++.+.  +.+.|+.||++  +++.+++.|||++ 
T Consensus       115 ~~p~v~~~~~~~~~~~~~~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~--~~i~f~~vd~~~~~~~~~~~~fgi~~~  192 (361)
T 3uem_A          115 QLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFK--GKILFIFIDSDHTDNQRILEFFGLKKE  192 (361)
T ss_dssp             SSCSEEECSTTTHHHHHSCSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGT--TTCEEEEECTTSGGGHHHHHHTTCCTT
T ss_pred             CCCcceecCcccHHHHhcCCCCcEEEEEEeCCchhHHHHHHHHHHHHHHcc--CceEEEEecCChHHHHHHHHHcCCCcc
Confidence            3567899999999998844 5678999999999999999999999999996  46999999999  7899999999997 


Q ss_pred             -CCeEEEEeCCCcCccccC---CCCCHHHHHHHHHHhhC
Q 026412           97 -FPTLKFFPKGNKDGEEYG---GGRDLEDFVSFINEKCG  131 (239)
Q Consensus        97 -~Pt~~~~~~g~~~~~~~~---g~~~~~~l~~~l~~~~~  131 (239)
                       +|+++++..|+ ....|.   |.++.+.+.+|+.+.++
T Consensus       193 ~~P~~~~~~~~~-~~~ky~~~~~~~~~~~l~~fi~~~l~  230 (361)
T 3uem_A          193 ECPAVRLITLEE-EMTKYKPESEELTAERITEFCHRFLE  230 (361)
T ss_dssp             TCSEEEEEECC---CCEECCSSCCCCHHHHHHHHHHHHT
T ss_pred             CCccEEEEEcCC-cccccCCCccccCHHHHHHHHHHHhc
Confidence             99999998763 344554   78999999999999875

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=99.54  E-value=1.3e-14  Score=101.72  Aligned_cols=78  Identities=14%  Similarity=0.155  Sum_probs=67.9

Q ss_pred             CcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHH
Q 026412           41 RGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLE  120 (239)
Q Consensus        41 k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~  120 (239)
                      ...++.||++||++|+.+.|.++++++.+.    +.+..||++++++++.+|+++ +|++++|.+| +..  ..|..+.+
T Consensus        29 m~~vv~y~~~~C~~C~~a~~~L~~l~~e~~----i~~~~vDId~d~~l~~~ygv~-VP~l~~~~dG-~~v--~~g~~~~~  100 (107)
T 2fgx_A           29 PRKLVVYGREGCHLCEEMIASLRVLQKKSW----FELEVINIDGNEHLTRLYNDR-VPVLFAVNED-KEL--CHYFLDSD  100 (107)
T ss_dssp             CCCEEEEECSSCHHHHHHHHHHHHHHHHSC----CCCEEEETTTCHHHHHHSTTS-CSEEEETTTT-EEE--ECSSCCCH
T ss_pred             ccEEEEEeCCCChhHHHHHHHHHHHHHhcC----CeEEEEECCCCHHHHHHhCCC-CceEEEEECC-EEE--EecCCCHH
Confidence            367999999999999999999999998863    889999999999999999997 9999989876 332  45778889


Q ss_pred             HHHHHH
Q 026412          121 DFVSFI  126 (239)
Q Consensus       121 ~l~~~l  126 (239)
                      +|.+||
T Consensus       101 ~L~~~L  106 (107)
T 2fgx_A          101 VIGAYL  106 (107)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998887

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.54  E-value=2.3e-14  Score=105.89  Aligned_cols=87  Identities=16%  Similarity=0.203  Sum_probs=68.6

Q ss_pred             cEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc--------------------
Q 026412           25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--------------------   84 (239)
Q Consensus        25 v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~--------------------   84 (239)
                      +..++++.+.-.-.++++++|.||++||++|+.+.|.+.++++.++...++.++.|+++.                    
T Consensus        13 l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~   92 (144)
T 1i5g_A           13 VLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFE   92 (144)
T ss_dssp             EEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTT
T ss_pred             EEcCCCCEecHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccC
Confidence            444555544333346789999999999999999999999999999754578888888875                    


Q ss_pred             ----chhHHHHcCCCCCCeEEEEe-CCCcCcc
Q 026412           85 ----YKDLAEKYGVSGFPTLKFFP-KGNKDGE  111 (239)
Q Consensus        85 ----~~~l~~~~~i~~~Pt~~~~~-~g~~~~~  111 (239)
                          +..++++|+|.++|++++++ ++|+...
T Consensus        93 ~~d~~~~~~~~~~v~~~P~~~lid~~~G~i~~  124 (144)
T 1i5g_A           93 DRKGMEFLTTGFDVKSIPTLVGVEADSGNIIT  124 (144)
T ss_dssp             CHHHHHHHHHHTTCCSSSEEEEEETTTCCEEE
T ss_pred             chHHHHHHHHHcCCCCCCEEEEEECCCCcEEe
Confidence                25789999999999999998 5555433

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=99.53  E-value=1.4e-14  Score=98.08  Aligned_cols=74  Identities=18%  Similarity=0.273  Sum_probs=62.0

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHH
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFV  123 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~  123 (239)
                      ++.||++||++|+.+.|.+++++..+       +..||++++++++.+|+++ +|++++ .+| +..   .|..+.+.+.
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~-------~~~vdid~~~~l~~~~g~~-vPtl~~-~~G-~~v---~g~~~~~~L~   69 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA-------FFSVFIDDDAALESAYGLR-VPVLRD-PMG-REL---DWPFDAPRLR   69 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC-------EEEEECTTCHHHHHHHTTT-CSEEEC-TTC-CEE---ESCCCHHHHH
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh-------eEEEECCCCHHHHHHhCCC-cCeEEE-ECC-EEE---eCCCCHHHHH
Confidence            78999999999999999998775442       5789999999999999998 999977 555 433   2888999999


Q ss_pred             HHHHHhh
Q 026412          124 SFINEKC  130 (239)
Q Consensus       124 ~~l~~~~  130 (239)
                      ++|++..
T Consensus        70 ~~l~~~~   76 (87)
T 1ttz_A           70 AWLDAAP   76 (87)
T ss_dssp             HHHHTCC
T ss_pred             HHHHHHH
Confidence            9997654

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.53  E-value=7e-14  Score=104.54  Aligned_cols=89  Identities=11%  Similarity=0.181  Sum_probs=76.1

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchh-----------------------HHHHcCCC
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD-----------------------LAEKYGVS   95 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~-----------------------l~~~~~i~   95 (239)
                      .+++++|.||++||++|+...|.+.++.++++.. ++.++.|+++...+                       +++.|++.
T Consensus        34 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~  112 (152)
T 2lrt_A           34 KGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQ-GFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVT  112 (152)
T ss_dssp             GGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG-TEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCC
T ss_pred             CCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccC-CeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCcc
Confidence            4689999999999999999999999999998743 59999999886543                       88999999


Q ss_pred             CCCeEEEEeCCCcCccccCCCCCHHHHHHHHHH
Q 026412           96 GFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE  128 (239)
Q Consensus        96 ~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~  128 (239)
                      ++|++++++++|+....+.|..+.++...-+.+
T Consensus       113 ~~P~~~lid~~G~i~~~~~g~~~~e~~~~~~~~  145 (152)
T 2lrt_A          113 NLPSVFLVNRNNELSARGENIKDLDEAIKKLLE  145 (152)
T ss_dssp             SCSEEEEEETTTEEEEETTTCSCHHHHHHHHHG
T ss_pred             cCceEEEECCCCeEEEecCCHHHHHHHHHHHHh
Confidence            999999998777888888898888777655543

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.53  E-value=5.4e-14  Score=106.71  Aligned_cols=86  Identities=16%  Similarity=0.287  Sum_probs=68.4

Q ss_pred             cEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc-------------------
Q 026412           25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-------------------   85 (239)
Q Consensus        25 v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~-------------------   85 (239)
                      +...+. .+.-.-.++++++|.||++||++|+.+.|.+.++++.++.+.++.++.|+++..                   
T Consensus        34 l~~~~g-~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~  112 (165)
T 3s9f_A           34 LRKQAD-TADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFA  112 (165)
T ss_dssp             EEETTE-EECSGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTT
T ss_pred             eecCCC-cccHHHcCCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccC
Confidence            444444 333222357999999999999999999999999999998645788888888755                   


Q ss_pred             -----hhHHHHcCCCCCCeEEEEeCC-CcCcc
Q 026412           86 -----KDLAEKYGVSGFPTLKFFPKG-NKDGE  111 (239)
Q Consensus        86 -----~~l~~~~~i~~~Pt~~~~~~g-~~~~~  111 (239)
                           ..+++.|+|.++|++++++++ |+...
T Consensus       113 ~~~~~~~l~~~~~v~~~Pt~~lid~~~G~iv~  144 (165)
T 3s9f_A          113 NRNIVEALTKKYSVESIPTLIGLNADTGDTVT  144 (165)
T ss_dssp             CHHHHHHHHHHTTCCSSSEEEEEETTTCCEEE
T ss_pred             chhHHHHHHHHcCCCCCCEEEEEeCCCCEEEe
Confidence                 678999999999999999865 55443

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.52  E-value=4.6e-14  Score=104.57  Aligned_cols=86  Identities=16%  Similarity=0.217  Sum_probs=67.1

Q ss_pred             cEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc--------------------
Q 026412           25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--------------------   84 (239)
Q Consensus        25 v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~--------------------   84 (239)
                      +..+++ .+.-.--++++++|.||++||++|+.+.|.+.++++.+....++.++.|+++.                    
T Consensus        14 l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~   92 (146)
T 1o8x_A           14 LRRGDG-EVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFA   92 (146)
T ss_dssp             EEETTE-EEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGG
T ss_pred             EEcCCC-CCcHHHhCCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccc
Confidence            344444 33322246789999999999999999999999999999744578888888875                    


Q ss_pred             ----chhHHHHcCCCCCCeEEEEe-CCCcCcc
Q 026412           85 ----YKDLAEKYGVSGFPTLKFFP-KGNKDGE  111 (239)
Q Consensus        85 ----~~~l~~~~~i~~~Pt~~~~~-~g~~~~~  111 (239)
                          +..++++|+|.++|++++++ ++|+...
T Consensus        93 ~~d~~~~~~~~~~v~~~Pt~~lid~~~G~i~~  124 (146)
T 1o8x_A           93 QSEAVQKLSKHFNVESIPTLIGVDADSGDVVT  124 (146)
T ss_dssp             GHHHHHHHHHHTTCCSSSEEEEEETTTCCEEE
T ss_pred             hhhHHHHHHHHhCCCCCCEEEEEECCCCeEEE
Confidence                34789999999999999998 5545433

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.51  E-value=1.4e-13  Score=102.47  Aligned_cols=89  Identities=15%  Similarity=0.253  Sum_probs=74.3

Q ss_pred             CCCcEEEEEECCCChH--HhhHhHHHHHHHHHccCCCCeEEEEEeCccch-------------------------hHHHH
Q 026412           39 QDRGALVEFYAPWCGH--CKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-------------------------DLAEK   91 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~--C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~-------------------------~l~~~   91 (239)
                      .+++++|.||++||++  |+...|.+.++.+.++.+.++.++.|+++..+                         .+++.
T Consensus        32 ~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  111 (150)
T 3fw2_A           32 KQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQ  111 (150)
T ss_dssp             TTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHH
Confidence            5789999999999999  99999999999999933446999999888543                         78999


Q ss_pred             cCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412           92 YGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus        92 ~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      |++.++|++++++++|+....+.   +.+++.+.|++.+
T Consensus       112 ~~v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~~ll  147 (150)
T 3fw2_A          112 YSIYKIPANILLSSDGKILAKNL---RGEELKKKIENIV  147 (150)
T ss_dssp             TTCCSSSEEEEECTTSBEEEESC---CHHHHHHHHHHHH
T ss_pred             cCCCccCeEEEECCCCEEEEccC---CHHHHHHHHHHHH
Confidence            99999999999977666655553   7888888887654

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.51  E-value=7.5e-14  Score=107.03  Aligned_cols=88  Identities=22%  Similarity=0.332  Sum_probs=74.6

Q ss_pred             cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeC-----------------------ccchhHHHHcCC
Q 026412           38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA-----------------------DKYKDLAEKYGV   94 (239)
Q Consensus        38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~-----------------------~~~~~l~~~~~i   94 (239)
                      -.+++++|.||++||++|+...|.+.++.+.     ++.++.|++                       +.+..+++.|++
T Consensus        56 ~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~-----~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  130 (176)
T 3kh7_A           56 LKGKPALVNVWGTWCPSCRVEHPELTRLAEQ-----GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGV  130 (176)
T ss_dssp             GCSSCEEEEEECTTCHHHHHHHHHHHHHHHT-----TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTC
T ss_pred             hCCCEEEEEEECCcCHHHHHHHHHHHHHHHC-----CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCC
Confidence            4578999999999999999999999999876     477777774                       334578899999


Q ss_pred             CCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412           95 SGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus        95 ~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      .++|++++++++|+....+.|..+.+.+.++|.+.+
T Consensus       131 ~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l  166 (176)
T 3kh7_A          131 YGAPETYLIDKQGIIRHKIVGVVDQKVWREQLAPLY  166 (176)
T ss_dssp             CSSCEEEEECTTCBEEEEEESCCCHHHHHHHTHHHH
T ss_pred             CCCCeEEEECCCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence            999999999877788888889999999998887654

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=99.50  E-value=8.8e-14  Score=104.09  Aligned_cols=104  Identities=14%  Similarity=0.190  Sum_probs=79.7

Q ss_pred             hhHHHHh----cCCCcEEEEEECCCChHHhhHhHHH---HHHHHHccCCCCeEEEEEeCcc--chhHHHHcCCCCCCeEE
Q 026412           31 DNFEKEV----GQDRGALVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDADK--YKDLAEKYGVSGFPTLK  101 (239)
Q Consensus        31 ~~f~~~~----~~~k~vlV~F~a~wC~~C~~~~~~~---~~~a~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~~  101 (239)
                      .+|++.+    ..+|+++|+||++||.+|+.|....   .++.+.+.  .+++++++|.++  +..++++|++.++|+++
T Consensus        29 ~~~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~--~~fv~v~~d~~~~~~~~l~~~y~v~~~P~~~  106 (153)
T 2dlx_A           29 GSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIR--EHFIFWQVYHDSEEGQRYIQFYKLGDFPYVS  106 (153)
T ss_dssp             SCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHH--HTEEEEEEESSSHHHHHHHHHHTCCSSSEEE
T ss_pred             cCHHHHHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHH--cCeEEEEEecCCHhHHHHHHHcCCCCCCEEE
Confidence            4566655    5589999999999999999997554   34444432  268899999874  45788999999999999


Q ss_pred             EEeCC-CcCccccCCCCCHHHHHHHHHHhhCCCCCCC
Q 026412          102 FFPKG-NKDGEEYGGGRDLEDFVSFINEKCGTSRDGK  137 (239)
Q Consensus       102 ~~~~g-~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~  137 (239)
                      +++.. |+....+.| .++++|.++|++.+.......
T Consensus       107 fld~~~G~~l~~~~g-~~~~~fl~~L~~~l~~~~~~~  142 (153)
T 2dlx_A          107 ILDPRTGQKLVEWHQ-LDVSSFLDQVTGFLGEHGQLD  142 (153)
T ss_dssp             EECTTTCCCCEEESS-CCHHHHHHHHHHHHHHTCSCS
T ss_pred             EEeCCCCcEeeecCC-CCHHHHHHHHHHHHHhcCCCC
Confidence            99774 555555666 899999999988876554443

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.50  E-value=1.1e-13  Score=102.15  Aligned_cols=73  Identities=19%  Similarity=0.389  Sum_probs=62.0

Q ss_pred             cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc------------------------chhHHHHcC
Q 026412           38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK------------------------YKDLAEKYG   93 (239)
Q Consensus        38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~------------------------~~~l~~~~~   93 (239)
                      .++++++|.||++||++|+.+.|.+.++++.++...++.++.|+++.                        +..++++|+
T Consensus        26 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (144)
T 1o73_A           26 LVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFG  105 (144)
T ss_dssp             GTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHT
T ss_pred             hCCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcC
Confidence            35789999999999999999999999999998744578888888875                        346889999


Q ss_pred             CCCCCeEEEEe-CCCcCc
Q 026412           94 VSGFPTLKFFP-KGNKDG  110 (239)
Q Consensus        94 i~~~Pt~~~~~-~g~~~~  110 (239)
                      |.++|++++++ ++|+..
T Consensus       106 v~~~Pt~~lid~~~G~i~  123 (144)
T 1o73_A          106 VESIPTLITINADTGAII  123 (144)
T ss_dssp             CCSSSEEEEEETTTCCEE
T ss_pred             CCCCCEEEEEECCCCeEE
Confidence            99999999998 554543

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=99.50  E-value=1.6e-14  Score=118.68  Aligned_cols=85  Identities=18%  Similarity=0.323  Sum_probs=64.4

Q ss_pred             hhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEe---C-ccchhHHHHcCCCCCCeEEEEeC
Q 026412           30 EDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD---A-DKYKDLAEKYGVSGFPTLKFFPK  105 (239)
Q Consensus        30 ~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd---~-~~~~~l~~~~~i~~~Pt~~~~~~  105 (239)
                      ...+.+.+.+  ..+|.|||||||||+++.|.|++++++++      .+.+|   . +++++++++|+|+++||+++  +
T Consensus       189 ~~~la~~l~~--~~vV~F~A~WC~~Ck~l~p~le~lA~~l~------~Vd~d~~d~~~~~~~la~~~gI~~vPT~~i--~  258 (291)
T 3kp9_A          189 AVGLAAHLRQ--IGGTMYGAYWCPHCQDQKELFGAAFDQVP------YVECSPNGPGTPQAQECTEAGITSYPTWII--N  258 (291)
T ss_dssp             HHHHHHHHHH--TTCEEEECTTCHHHHHHHHHHGGGGGGSC------EEESCSSCSSSCCCHHHHTTTCCSTTEEEE--T
T ss_pred             HHHHHHHhCC--CCEEEEECCCCHHHHHHHHHHHHHHHHcC------EEEEeecCchhhHHHHHHHcCCcccCeEEE--C
Confidence            3345555533  34799999999999999999999987652      33333   2 23789999999999999644  5


Q ss_pred             CCcCccccCCCCCHHHHHHHHHH
Q 026412          106 GNKDGEEYGGGRDLEDFVSFINE  128 (239)
Q Consensus       106 g~~~~~~~~g~~~~~~l~~~l~~  128 (239)
                      | +   +|.|.++.+++.+|++-
T Consensus       259 G-~---~~~G~~~~~~L~~~l~~  277 (291)
T 3kp9_A          259 G-R---TYTGVRSLEALAVASGY  277 (291)
T ss_dssp             T-E---EEESCCCHHHHHHHTCC
T ss_pred             C-E---EecCCCCHHHHHHHHCC
Confidence            5 3   48999999999999853

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.49  E-value=1.3e-13  Score=107.05  Aligned_cols=94  Identities=13%  Similarity=0.215  Sum_probs=78.1

Q ss_pred             CCC-cEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc-----------------------------cchhH
Q 026412           39 QDR-GALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-----------------------------KYKDL   88 (239)
Q Consensus        39 ~~k-~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~-----------------------------~~~~l   88 (239)
                      .++ +++|.||++||++|+...|.+.++.+++... ++.++.|+++                             .+..+
T Consensus        44 ~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~  122 (196)
T 2ywi_A           44 KSDAATVIMFICNHCPFVKHVQHELVRLANDYMPK-GVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEV  122 (196)
T ss_dssp             CCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGG-TCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHH
T ss_pred             CCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhC-CcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHH
Confidence            455 5999999999999999999999999998743 5888888873                             34578


Q ss_pred             HHHcCCCCCCeEEEEeCCCcCccc---------cCCCCCHHHHHHHHHHhhCCC
Q 026412           89 AEKYGVSGFPTLKFFPKGNKDGEE---------YGGGRDLEDFVSFINEKCGTS  133 (239)
Q Consensus        89 ~~~~~i~~~Pt~~~~~~g~~~~~~---------~~g~~~~~~l~~~l~~~~~~~  133 (239)
                      ++.|++.++|++++++++|+....         +.|..+.+++.++|++.+...
T Consensus       123 ~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~  176 (196)
T 2ywi_A          123 AKAYDAACTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGR  176 (196)
T ss_dssp             HHHHTCCEESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHTC
T ss_pred             HHHhCCCCCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHHHcCC
Confidence            999999999999999877666555         567789999999999887543

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.47  E-value=3e-13  Score=104.21  Aligned_cols=93  Identities=19%  Similarity=0.422  Sum_probs=77.0

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc-----hhHHHHcCCC------------------
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-----KDLAEKYGVS------------------   95 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~-----~~l~~~~~i~------------------   95 (239)
                      .+++++|.||++||++|+...|.+.++.+.+.. .++.++.|+++..     ..+++++++.                  
T Consensus        59 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~-~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  137 (186)
T 1jfu_A           59 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSG-PNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKA  137 (186)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCB-TTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHT
T ss_pred             CCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhcc-CCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhcc
Confidence            578999999999999999999999999999863 4688888888754     4566777774                  


Q ss_pred             -----CCCeEEEEeCCCcCccccCCCCC--HHHHHHHHHHhhCC
Q 026412           96 -----GFPTLKFFPKGNKDGEEYGGGRD--LEDFVSFINEKCGT  132 (239)
Q Consensus        96 -----~~Pt~~~~~~g~~~~~~~~g~~~--~~~l~~~l~~~~~~  132 (239)
                           ++|++++++++|+....+.|..+  .+++.++|++.++.
T Consensus       138 ~~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~~  181 (186)
T 1jfu_A          138 IGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATGK  181 (186)
T ss_dssp             TTCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHHC-
T ss_pred             ccccCCCCEEEEECCCCCEEEEEecCCccCHHHHHHHHHHHhcc
Confidence                 89999999877777778888754  78999999988753

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.47  E-value=2.1e-13  Score=105.38  Aligned_cols=93  Identities=14%  Similarity=0.136  Sum_probs=75.7

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc-----------------------------cchhHH
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-----------------------------KYKDLA   89 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~-----------------------------~~~~l~   89 (239)
                      .+++++|.||++||++|+...|.+.++.+.+...  +.++.|+++                             .+..++
T Consensus        32 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~--~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~  109 (188)
T 2cvb_A           32 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK--VAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVA  109 (188)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT--EEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHH
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcC--eEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHH
Confidence            5699999999999999999999999999999743  889999873                             345789


Q ss_pred             HHcCCCCCCeEEEEeCCCcCccc--------cCCCCCHHHHHHHHHHhhCCC
Q 026412           90 EKYGVSGFPTLKFFPKGNKDGEE--------YGGGRDLEDFVSFINEKCGTS  133 (239)
Q Consensus        90 ~~~~i~~~Pt~~~~~~g~~~~~~--------~~g~~~~~~l~~~l~~~~~~~  133 (239)
                      +.|++.++|++++++++|+....        +.|..+.+++.+.|++.+...
T Consensus       110 ~~~~v~~~P~~~lid~~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~~~  161 (188)
T 2cvb_A          110 KAYRALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGE  161 (188)
T ss_dssp             HHTTCCEESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTC
T ss_pred             HHcCCCCCCeEEEECCCCcEEEEEecCCccccccccCHHHHHHHHHHHHcCC
Confidence            99999999999999776664433        223347889999999887643

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.46  E-value=2e-13  Score=115.63  Aligned_cols=92  Identities=13%  Similarity=0.161  Sum_probs=79.9

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc---------------------------chhHHHH
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------------YKDLAEK   91 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~---------------------------~~~l~~~   91 (239)
                      .+++++|.||++||++|+.+.|.+.+++++++. .++.++.|+++.                           +..+++.
T Consensus        81 ~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~-~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~  159 (352)
T 2hyx_A           81 RGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKD-SGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTN  159 (352)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG-GTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHH
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhhc-CCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHH
Confidence            578999999999999999999999999999874 358899997642                           3578899


Q ss_pred             cCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412           92 YGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus        92 ~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      |+|.++|++++++++|+....+.|..+.+++.++|++.+.
T Consensus       160 ygV~~~Pt~~lID~~G~Iv~~~~G~~~~~~l~~~I~~lL~  199 (352)
T 2hyx_A          160 YRNRYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQLLN  199 (352)
T ss_dssp             TTCCEESEEEEECTTSBEEEEEESBCCHHHHHHHHHHHHH
T ss_pred             cCCCccCEEEEEeCCCeEEEEEcCCCCHHHHHHHHHHHHh
Confidence            9999999999997777888888999999999999988763

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=99.46  E-value=2.4e-13  Score=100.27  Aligned_cols=85  Identities=12%  Similarity=0.144  Sum_probs=68.6

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc--------------------------hhHHHHc
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY--------------------------KDLAEKY   92 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~--------------------------~~l~~~~   92 (239)
                      ++++++|.||++||++|+...|.+.++.+.++.. ++.++.|+++..                          ..+++.|
T Consensus        31 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  109 (143)
T 4fo5_A           31 LGRYTLLNFWAAYDAESRARNVQLANEVNKFGPD-KIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKY  109 (143)
T ss_dssp             SCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTT-TEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcC-CEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHc
Confidence            5789999999999999999999999999998744 688888887732                          2577899


Q ss_pred             CCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHH
Q 026412           93 GVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN  127 (239)
Q Consensus        93 ~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~  127 (239)
                      ++.++|++++++++|+...+..   +.+++.++++
T Consensus       110 ~v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~  141 (143)
T 4fo5_A          110 DLRKGFKNFLINDEGVIIAANV---TPEKLTEILK  141 (143)
T ss_dssp             TGGGCCCEEEECTTSBEEEESC---CHHHHHHHHT
T ss_pred             CCCCCCcEEEECCCCEEEEccC---CHHHHHHHHH
Confidence            9999999999987666554433   4677777664

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.44  E-value=4.2e-13  Score=108.24  Aligned_cols=97  Identities=11%  Similarity=0.188  Sum_probs=81.3

Q ss_pred             hhhHHHHh-cCCCcEEEEEECCC--ChHHhhHhHHHHHHHHHccC-CCC--eEEEEEeCccchhHHHHcCCCCCCeEEEE
Q 026412           30 EDNFEKEV-GQDRGALVEFYAPW--CGHCKNLAPTYEKVAAAFTL-EDD--VVVANLDADKYKDLAEKYGVSGFPTLKFF  103 (239)
Q Consensus        30 ~~~f~~~~-~~~k~vlV~F~a~w--C~~C~~~~~~~~~~a~~~~~-~~~--v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~  103 (239)
                      .++|.+.+ .-.++++|.||++|  |++|+.+.|.++++++.+.. .++  +.|+.+|++++++++++|+|+++||+.+|
T Consensus        14 ~~ql~~~~~~~~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~~~~~~gv~~~Pt~~i~   93 (243)
T 2hls_A           14 RRELRETLAEMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKVERVPTVAFL   93 (243)
T ss_dssp             HHHHHHHHTTCCSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTHHHHHHTTCCSSSEEEET
T ss_pred             HHHHHHHHHhCCCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCHHHHHhcCCCcCCEEEEE
Confidence            35566666 44679999999999  99999999999999988531 122  99999999999999999999999999999


Q ss_pred             eCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412          104 PKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus       104 ~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                       +|   ..+|.|.++.+.+..|+....
T Consensus        94 -~g---~~~~~G~~~~~~l~~fv~~~l  116 (243)
T 2hls_A           94 -GG---EVRWTGIPAGEEIRALVEVIM  116 (243)
T ss_dssp             -TT---TEEEESCCCTTHHHHHHHHHH
T ss_pred             -CC---ceeEcCCCcHHHHHHHHHHHH
Confidence             44   678889888888888887754

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=99.16  E-value=9.8e-15  Score=109.74  Aligned_cols=103  Identities=17%  Similarity=0.272  Sum_probs=74.2

Q ss_pred             cChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHH-HHHHccCCCCeEEEEEeCccchhHHHH---------------
Q 026412           28 LTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEK-VAAAFTLEDDVVVANLDADKYKDLAEK---------------   91 (239)
Q Consensus        28 l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~-~a~~~~~~~~v~~~~vd~~~~~~l~~~---------------   91 (239)
                      ++++.+.-.--.+++++|.||++||++|+.+.|.+.+ +...+....++.++.|+++..++..++               
T Consensus        21 ~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~  100 (159)
T 2ls5_A           21 TDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDP  100 (159)
Confidence            4444433222357899999999999999999999998 888876345788888988765433333               


Q ss_pred             -------cC--CCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412           92 -------YG--VSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus        92 -------~~--i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                             |+  +.++|++++++++|+....+.| .+.+++.+++++..+
T Consensus       101 ~~~~~~~~~~~~~~~P~~~lid~~G~i~~~~~g-~~~~~l~~~l~~l~~  148 (159)
T 2ls5_A          101 GADIFAKYALRDAGITRNVLIDREGKIVKLTRL-YNEEEFASLVQQINE  148 (159)
Confidence                   33  5679999999766676666666 566777777766544

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=99.39  E-value=1.1e-12  Score=99.39  Aligned_cols=93  Identities=14%  Similarity=0.161  Sum_probs=77.5

Q ss_pred             CCCcEEEEEECCCChH-HhhHhHHHHHHHHHccC---CCCeEEEEEeCccc----------------------------h
Q 026412           39 QDRGALVEFYAPWCGH-CKNLAPTYEKVAAAFTL---EDDVVVANLDADKY----------------------------K   86 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~-C~~~~~~~~~~a~~~~~---~~~v~~~~vd~~~~----------------------------~   86 (239)
                      .+++++|.||++||++ |+...|.+.++.+.+..   ..++.++.|++|..                            .
T Consensus        25 ~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~  104 (171)
T 2rli_A           25 RGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVA  104 (171)
T ss_dssp             TTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHH
T ss_pred             CCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            4789999999999998 99999999999999853   24788888887621                            2


Q ss_pred             hHHHHcCCCCCC---------------eEEEEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412           87 DLAEKYGVSGFP---------------TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus        87 ~l~~~~~i~~~P---------------t~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      .+++.|++...|               ++++++++|+....+.|..+.+++.+.|++.+.
T Consensus       105 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  164 (171)
T 2rli_A          105 QASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMA  164 (171)
T ss_dssp             HHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             HHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            578899999888               888887777777788899999999999987654

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.38  E-value=3.4e-12  Score=113.76  Aligned_cols=97  Identities=14%  Similarity=0.234  Sum_probs=81.9

Q ss_pred             cEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEE
Q 026412           25 VVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF  103 (239)
Q Consensus        25 v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~  103 (239)
                      ...++++.++++. ...+..++.||++||++|+.+.|.+++++..++   ++.+..+|.+.+++++++|+|.++|++++ 
T Consensus       101 ~~~~~~~~~~~i~~~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~---~v~~~~vd~~~~~~~~~~~~i~svPt~~i-  176 (521)
T 1hyu_A          101 PSKEAQSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP---RIKHTAIDGGTFQNEITERNVMGVPAVFV-  176 (521)
T ss_dssp             CCCSCHHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT---TEEEEEEETTTCHHHHHHTTCCSSSEEEE-
T ss_pred             CCCCCHHHHHHHHhcCCCcceEEEECCCCcCcHHHHHHHHHHHhHcC---ceEEEEEechhhHHHHHHhCCCccCEEEE-
Confidence            3567888888876 345677999999999999999999999998874   79999999999999999999999999966 


Q ss_pred             eCCCcCccccCCCCCHHHHHHHHHHh
Q 026412          104 PKGNKDGEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus       104 ~~g~~~~~~~~g~~~~~~l~~~l~~~  129 (239)
                       +| +..  ..|..+.+++.+|+...
T Consensus       177 -~g-~~~--~~G~~~~~~l~~~l~~~  198 (521)
T 1hyu_A          177 -NG-KEF--GQGRMTLTEIVAKVDTG  198 (521)
T ss_dssp             -TT-EEE--EESCCCHHHHHHHHCCS
T ss_pred             -CC-EEE--ecCCCCHHHHHHHHhhc
Confidence             55 433  34889999999998653

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=99.38  E-value=9.7e-13  Score=99.01  Aligned_cols=93  Identities=14%  Similarity=0.152  Sum_probs=77.4

Q ss_pred             CCCcEEEEEECCCChH-HhhHhHHHHHHHHHccCC---CCeEEEEEeCccc----------------------------h
Q 026412           39 QDRGALVEFYAPWCGH-CKNLAPTYEKVAAAFTLE---DDVVVANLDADKY----------------------------K   86 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~-C~~~~~~~~~~a~~~~~~---~~v~~~~vd~~~~----------------------------~   86 (239)
                      .+++++|.||++||++ |+...|.+.++.+.++..   .++.++.|++|..                            .
T Consensus        22 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~  101 (164)
T 2ggt_A           22 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD  101 (164)
T ss_dssp             TTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            5789999999999998 999999999999988642   3688888887642                            1


Q ss_pred             hHHHHcCCCCCC---------------eEEEEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412           87 DLAEKYGVSGFP---------------TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus        87 ~l~~~~~i~~~P---------------t~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      .+++.|++...|               +++++.++|+....+.|..+.+++.+.|++.+.
T Consensus       102 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  161 (164)
T 2ggt_A          102 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMR  161 (164)
T ss_dssp             HHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHG
T ss_pred             HHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence            478899999999               788887777877888899999999999987653

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=99.38  E-value=1.5e-13  Score=97.89  Aligned_cols=88  Identities=19%  Similarity=0.316  Sum_probs=61.7

Q ss_pred             hhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc-----hhHHHHcCCCCCCeEEEEeC
Q 026412           31 DNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-----KDLAEKYGVSGFPTLKFFPK  105 (239)
Q Consensus        31 ~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~-----~~l~~~~~i~~~Pt~~~~~~  105 (239)
                      +.+++++. ++++++ ||++||++|+.+.|.+.+++..      +.++.||.+.+     ..++++|++.++|++  |.+
T Consensus        11 ~~~~~~~~-~~~vv~-f~a~~C~~C~~~~~~l~~~~~~------~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~--~~~   80 (116)
T 2e7p_A           11 KKAKELAS-SAPVVV-FSKTYCGYCNRVKQLLTQVGAS------YKVVELDELSDGSQLQSALAHWTGRGTVPNV--FIG   80 (116)
T ss_dssp             HHHHHHHT-SSSEEE-EECTTCHHHHHHHHHHHHHTCC------CEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EET
T ss_pred             HHHHHHHc-CCCEEE-EECCCChhHHHHHHHHHHcCCC------eEEEEccCCCChHHHHHHHHHHhCCCCcCEE--EEC
Confidence            34455554 456666 9999999999999999887432      45667776654     569999999999998  445


Q ss_pred             CCcCccccCCCC---CHHHHHHHHHHh
Q 026412          106 GNKDGEEYGGGR---DLEDFVSFINEK  129 (239)
Q Consensus       106 g~~~~~~~~g~~---~~~~l~~~l~~~  129 (239)
                      | +....+.|..   +.+.+.++|++.
T Consensus        81 g-~~v~~~~~~~~~~~~~~l~~~l~~~  106 (116)
T 2e7p_A           81 G-KQIGGCDTVVEKHQRNELLPLLQDA  106 (116)
T ss_dssp             T-EEEECHHHHHHHHHTTCHHHHHHHT
T ss_pred             C-EEECChHHHHHHHhCChHHHHHHHc
Confidence            5 4444444433   556777777663

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.38  E-value=1.9e-12  Score=102.57  Aligned_cols=107  Identities=14%  Similarity=0.195  Sum_probs=79.9

Q ss_pred             EEcChhhHHHHhcCCC-cEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc---------------------
Q 026412           26 VVLTEDNFEKEVGQDR-GALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD---------------------   83 (239)
Q Consensus        26 ~~l~~~~f~~~~~~~k-~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~---------------------   83 (239)
                      ..+++..+.-.--.++ +++|.||++||++|+...|.+.++.++++.. ++.++.|+++                     
T Consensus        44 ~~~~G~~v~l~~~~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~  122 (218)
T 3u5r_E           44 PDAGGNLFTLAEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQ-GLAVVAINSNDAQAFPEETLERVGAEVKAYG  122 (218)
T ss_dssp             ECTTCCEECGGGGTTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTT-TEEEEEEECSCTTTCGGGSHHHHHHHHHHHT
T ss_pred             ECCCCCEEeHHHhCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhC-CcEEEEEECCcccccccCCHHHHHHHHHHhC
Confidence            3344443332223456 5999999999999999999999999999743 5889999883                     


Q ss_pred             --------cchhHHHHcCCCCCCeEEEEeCCCcCccc---------cCCCCCHHHHHHHHHHhhCCC
Q 026412           84 --------KYKDLAEKYGVSGFPTLKFFPKGNKDGEE---------YGGGRDLEDFVSFINEKCGTS  133 (239)
Q Consensus        84 --------~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~---------~~g~~~~~~l~~~l~~~~~~~  133 (239)
                              ....+++.|++.++|++++++++|+...+         ..+..+.+++.+.|++.+...
T Consensus       123 ~~~~~l~D~~~~~~~~~~v~~~P~~~liD~~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~~  189 (218)
T 3u5r_E          123 YGFPYLKDASQSVAKAYGAACTPDFFLYDRERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKGK  189 (218)
T ss_dssp             CCSCEEECTTCHHHHHHTCCEESEEEEECTTCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHTTC
T ss_pred             CCccEEECCccHHHHHcCCCCCCeEEEECCCCcEEEeccccccccccccccCHHHHHHHHHHHHcCC
Confidence                    34678999999999999999776664322         123456889999999887543

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=99.06  E-value=5.4e-14  Score=103.50  Aligned_cols=74  Identities=20%  Similarity=0.434  Sum_probs=60.2

Q ss_pred             CCC-cEEEEEECCCChHHhhHhHHHHHHHHHccCC-CCeEEEEEeCccc-------------------------hhHHHH
Q 026412           39 QDR-GALVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKY-------------------------KDLAEK   91 (239)
Q Consensus        39 ~~k-~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~-~~v~~~~vd~~~~-------------------------~~l~~~   91 (239)
                      .++ +++|.||++||++|+.+.|.+.++++.++.. .++.++.|+++..                         ..+++.
T Consensus        24 ~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (143)
T 2lus_A           24 KDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAK  103 (143)
Confidence            456 9999999999999999999999999988532 3688888877744                         368899


Q ss_pred             cCCCCCCeEEEEeCCCcCccc
Q 026412           92 YGVSGFPTLKFFPKGNKDGEE  112 (239)
Q Consensus        92 ~~i~~~Pt~~~~~~g~~~~~~  112 (239)
                      |+|.++|++++++++|+....
T Consensus       104 ~~v~~~P~~~lid~~G~i~~~  124 (143)
T 2lus_A          104 YGITGIPALVIVKKDGTLISM  124 (143)
Confidence            999999999999855554433

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=99.35  E-value=7.2e-13  Score=100.51  Aligned_cols=90  Identities=17%  Similarity=0.205  Sum_probs=73.9

Q ss_pred             CCCcEEEEEECCCChH-HhhHhHHHHHHHHHccCC--CCeEEEEEeCccc----------------------------hh
Q 026412           39 QDRGALVEFYAPWCGH-CKNLAPTYEKVAAAFTLE--DDVVVANLDADKY----------------------------KD   87 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~-C~~~~~~~~~~a~~~~~~--~~v~~~~vd~~~~----------------------------~~   87 (239)
                      .+++++|.||++||++ |+...|.+.++.+.++..  +++.++.|++|..                            ..
T Consensus        34 ~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~  113 (172)
T 2k6v_A           34 QDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVRE  113 (172)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHH
Confidence            5789999999999997 999999999999988643  2688999988732                            25


Q ss_pred             HHHHcCC---------------CCCCeEEEEeCCCcCccccCCCC--CHHHHHHHHHHh
Q 026412           88 LAEKYGV---------------SGFPTLKFFPKGNKDGEEYGGGR--DLEDFVSFINEK  129 (239)
Q Consensus        88 l~~~~~i---------------~~~Pt~~~~~~g~~~~~~~~g~~--~~~~l~~~l~~~  129 (239)
                      +++.|++               .++|++++++ +|+....+.|..  +.+++.+.|++.
T Consensus       114 ~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~~g~~~~~~~~l~~~l~~l  171 (172)
T 2k6v_A          114 AAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLYSPDKAEATDRVVADLQAL  171 (172)
T ss_dssp             HHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEECHHHHTCHHHHHHHHHHC
T ss_pred             HHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEECCCCCCCHHHHHHHHHHh
Confidence            6666664               5789999999 767777888877  899999998764

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=99.35  E-value=1.1e-12  Score=99.87  Aligned_cols=91  Identities=16%  Similarity=0.192  Sum_probs=71.9

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc-----------cchhHH------------------
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-----------KYKDLA------------------   89 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~-----------~~~~l~------------------   89 (239)
                      .+++++|.||++||++|+ ..|.+.++.+++... ++.++.|+++           ....++                  
T Consensus        31 ~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~-~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~~~  108 (171)
T 3cmi_A           31 KGKVVLIVNVASKCGFTP-QYKELEALYKRYKDE-GFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNG  108 (171)
T ss_dssp             TTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGG-TEEEEEEEECSCC------------------CCCSCBBCCCBSSS
T ss_pred             CCCEEEEEEEecCCCcch-hHHHHHHHHHHhccC-CeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccCCC
Confidence            578999999999999999 999999999998743 5888888763           111122                  


Q ss_pred             ------------HHcCCCCCC------eEEEEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412           90 ------------EKYGVSGFP------TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus        90 ------------~~~~i~~~P------t~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                                  +.|++.++|      ++++++++|+....+.|..+.+.+.+.|++.+.
T Consensus       109 ~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  168 (171)
T 3cmi_A          109 GNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEELLK  168 (171)
T ss_dssp             TTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEECTTSCGGGGHHHHHHHHT
T ss_pred             ccchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence                        247888999      888887777877888898899999999988764

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.33  E-value=4e-12  Score=95.78  Aligned_cols=89  Identities=17%  Similarity=0.186  Sum_probs=70.7

Q ss_pred             CCCc-EEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc---------------------cchhHHHHcCCC
Q 026412           39 QDRG-ALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD---------------------KYKDLAEKYGVS   95 (239)
Q Consensus        39 ~~k~-vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~---------------------~~~~l~~~~~i~   95 (239)
                      .++. ++|.|| ++||++|+...|.+.++.++++.. ++.++.|++|                     ....+++.|++.
T Consensus        27 ~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~-~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  105 (161)
T 3drn_A           27 IGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDY-DVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAK  105 (161)
T ss_dssp             TTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTT-CEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCC
T ss_pred             cCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHc-CCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcCCC
Confidence            4566 999999 999999999999999999999743 5888888876                     346789999999


Q ss_pred             C----CCeEEEEeCCCcCccccCCC----CCHHHHHHHHHH
Q 026412           96 G----FPTLKFFPKGNKDGEEYGGG----RDLEDFVSFINE  128 (239)
Q Consensus        96 ~----~Pt~~~~~~g~~~~~~~~g~----~~~~~l~~~l~~  128 (239)
                      +    +|++++++++|+....+.|.    ...+++.+.|++
T Consensus       106 ~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~il~~l~~  146 (161)
T 3drn_A          106 GFILPARITFVIDKKGIIRHIYNSQMNPANHVNEALKALKQ  146 (161)
T ss_dssp             CSSSCCCEEEEECTTSBEEEEEECSSCTTHHHHHHHHHHHH
T ss_pred             CcCcccceEEEECCCCEEEEEEecCCCCCcCHHHHHHHHHH
Confidence            9    99999998777777777773    234445555543

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=99.33  E-value=3.2e-12  Score=99.07  Aligned_cols=92  Identities=15%  Similarity=0.149  Sum_probs=74.0

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc--------c---hhHH-HH---------------
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--------Y---KDLA-EK---------------   91 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~--------~---~~l~-~~---------------   91 (239)
                      .+++++|.||++||++|+...|.+.++.+++... ++.++.|++|.        .   .+.+ ++               
T Consensus        47 ~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~-~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~~~  125 (190)
T 2vup_A           47 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQ-GFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNG  125 (190)
T ss_dssp             TTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBSSS
T ss_pred             CCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcC-CeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeecccCc
Confidence            5789999999999999999999999999998743 58888888762        1   1222 22               


Q ss_pred             --------------cCCCCCC------eEEEEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412           92 --------------YGVSGFP------TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus        92 --------------~~i~~~P------t~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                                    |++.++|      +++++.++|+....+.|..+.+++.+.|++.+.
T Consensus       126 ~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  185 (190)
T 2vup_A          126 ENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKLIPLLE  185 (190)
T ss_dssp             TTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence                          3777788      888887777777888899999999999988764

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=99.33  E-value=2e-12  Score=97.83  Aligned_cols=92  Identities=10%  Similarity=0.142  Sum_probs=73.2

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc--------c---hhHHH-Hc--------------
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--------Y---KDLAE-KY--------------   92 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~--------~---~~l~~-~~--------------   92 (239)
                      .+++++|.||++||++|+...|.+.++.+++... ++.++.|+++.        .   .+.++ ++              
T Consensus        31 ~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~-~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  109 (170)
T 2p5q_A           31 KGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQ-GLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNG  109 (170)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBSSS
T ss_pred             CCCEEEEEEEeccCCccHHHHHHHHHHHHHhccC-CEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeeccCC
Confidence            5799999999999999999999999999998743 58899998752        1   22333 33              


Q ss_pred             ---------------CC--CCCC---eEEEEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412           93 ---------------GV--SGFP---TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus        93 ---------------~i--~~~P---t~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                                     ++  .++|   +++++.++|+....+.|..+.+++.++|++.+.
T Consensus       110 ~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  168 (170)
T 2p5q_A          110 ENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQLLE  168 (170)
T ss_dssp             TTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHTT
T ss_pred             CchHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEeeCCCCCHHHHHHHHHHHhh
Confidence                           44  5678   888887777777888898889999999988764

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=99.32  E-value=2.8e-12  Score=89.12  Aligned_cols=81  Identities=12%  Similarity=0.187  Sum_probs=64.4

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc--cchhHHHHcCCCCCCeEEEEeCCCcCccccCCC
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD--KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG  116 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~  116 (239)
                      ...+.++.||++||++|+.+.|.+++++.      ++.+..+|++  ++++++.+|+ .++|++  +.+| +. . ..|.
T Consensus        14 ~~~~~v~~f~~~~C~~C~~~~~~L~~l~~------~i~~~~vdi~~~~~~el~~~~g-~~vP~l--~~~g-~~-~-~~~g   81 (100)
T 1wjk_A           14 RALPVLTLFTKAPCPLCDEAKEVLQPYKD------RFILQEVDITLPENSTWYERYK-FDIPVF--HLNG-QF-L-MMHR   81 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHHHHTSTTSS------SSEEEEEETTSSTTHHHHHHSS-SSCSEE--EESS-SE-E-EESS
T ss_pred             CCCCEEEEEeCCCCcchHHHHHHHHHhhh------CCeEEEEECCCcchHHHHHHHC-CCCCEE--EECC-EE-E-EecC
Confidence            45678999999999999999999886532      3889999998  7889999999 999986  4455 32 2 3456


Q ss_pred             CCHHHHHHHHHHhhC
Q 026412          117 RDLEDFVSFINEKCG  131 (239)
Q Consensus       117 ~~~~~l~~~l~~~~~  131 (239)
                      .+.+.+.++|.+...
T Consensus        82 ~~~~~l~~~l~~~~~   96 (100)
T 1wjk_A           82 VNTSKLEKQLRKLSG   96 (100)
T ss_dssp             CCHHHHHHHHHSSSC
T ss_pred             CCHHHHHHHHHHHHh
Confidence            899999999987653

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=99.31  E-value=6e-12  Score=97.28  Aligned_cols=106  Identities=12%  Similarity=0.135  Sum_probs=77.8

Q ss_pred             cEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc--------chhHH-------
Q 026412           25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--------YKDLA-------   89 (239)
Q Consensus        25 v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~--------~~~l~-------   89 (239)
                      +..++++.+.-.--++++++|.||++||++|+...|.+.++.++++.. ++.++.|++|.        ...+.       
T Consensus        31 l~d~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~-~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~  109 (187)
T 3dwv_A           31 VLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQ-GFTVLAFPSNQFGGQEPGNEEEIKEFVCTKF  109 (187)
T ss_dssp             CBBTTSCBCCGGGGTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGG-TCEEEEEEBCCCSSCSSSBTTHHHHSCCBCC
T ss_pred             EEcCCCCEeeHHHhCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhC-CeEEEEEECcccCCCCCCCHHHHHHHHHhcc
Confidence            344444443322236799999999999999999999999999999754 58888887651        11111       


Q ss_pred             -----------------------------HHcCCCCCC---eEEEEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412           90 -----------------------------EKYGVSGFP---TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus        90 -----------------------------~~~~i~~~P---t~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                                                   ..+++..+|   ++++++++|+....+.|..+.+++.+.|++.+.
T Consensus       110 ~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~~~g~~~~~~l~~~i~~lL~  183 (187)
T 3dwv_A          110 KAEFPIMAKINVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIPLLG  183 (187)
T ss_dssp             CCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHC-
T ss_pred             CCCCceeeccccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence                                         112445667   888888777888888999999999999998875

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=99.29  E-value=1e-11  Score=93.84  Aligned_cols=91  Identities=14%  Similarity=0.130  Sum_probs=70.3

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc--------c---hhH-HHHc--------------
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--------Y---KDL-AEKY--------------   92 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~--------~---~~l-~~~~--------------   92 (239)
                      .+++++|.||++||++|+...|.+.++.+.+... ++.++.|+++.        .   ... .+++              
T Consensus        30 ~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  108 (169)
T 2v1m_A           30 RGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGK-GLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNG  108 (169)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSEEBCCCCCSS
T ss_pred             CCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcC-CeEEEEEECCccCCCCCCCHHHHHHHHHHhcCCCCceEEEEeecC
Confidence            5789999999999999999999999999998743 58899998752        1   122 1322              


Q ss_pred             ---------------C-----CCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412           93 ---------------G-----VSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus        93 ---------------~-----i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                                     +     +..+|+++++.++|+....+.|..+.+++.+.|++.+
T Consensus       109 ~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll  166 (169)
T 2v1m_A          109 SDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELL  166 (169)
T ss_dssp             TTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHH
T ss_pred             ccccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEcCCCCCHHHHHHHHHHHh
Confidence                           3     3345888888777777778888888888888887765

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.27  E-value=9e-12  Score=96.87  Aligned_cols=92  Identities=13%  Similarity=0.198  Sum_probs=76.7

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-------------------------chhHHHHc
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------------------------YKDLAEKY   92 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~   92 (239)
                      .+++++|.|| ++||++|+...|.+.++.+.+... ++.++.|+++.                         +..+++.|
T Consensus        44 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~-~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  122 (195)
T 2bmx_A           44 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDR-DAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAA  122 (195)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHH
T ss_pred             CCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHh
Confidence            4689999999 999999999999999999998743 68888887763                         34688899


Q ss_pred             CCC-----CCCeEEEEeCCCcCccccCCC----CCHHHHHHHHHHhhC
Q 026412           93 GVS-----GFPTLKFFPKGNKDGEEYGGG----RDLEDFVSFINEKCG  131 (239)
Q Consensus        93 ~i~-----~~Pt~~~~~~g~~~~~~~~g~----~~~~~l~~~l~~~~~  131 (239)
                      ++.     ++|++++++++|+....+.|.    .+.+++.+.|++...
T Consensus       123 ~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~  170 (195)
T 2bmx_A          123 GVLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQS  170 (195)
T ss_dssp             TCBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHC
T ss_pred             CCcccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence            999     999999998777776666664    378999999988764

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=99.26  E-value=1.5e-11  Score=92.27  Aligned_cols=89  Identities=13%  Similarity=0.187  Sum_probs=70.8

Q ss_pred             CCC-cEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-----------------------chhHHHHcC
Q 026412           39 QDR-GALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-----------------------YKDLAEKYG   93 (239)
Q Consensus        39 ~~k-~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-----------------------~~~l~~~~~   93 (239)
                      .++ +++|.|| ++||++|+...|.+.++.+.+.. .++.++.|++|.                       +..+++.|+
T Consensus        34 ~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  112 (160)
T 1xvw_A           34 RGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFEN-DDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYG  112 (160)
T ss_dssp             TTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSS-SSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTT
T ss_pred             cCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH-CCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHHHHcC
Confidence            455 9999998 99999999999999999999864 368888888763                       567899999


Q ss_pred             CC----CCC--eEEEEeCCCcCccccCCCC----CHHHHHHHHHH
Q 026412           94 VS----GFP--TLKFFPKGNKDGEEYGGGR----DLEDFVSFINE  128 (239)
Q Consensus        94 i~----~~P--t~~~~~~g~~~~~~~~g~~----~~~~l~~~l~~  128 (239)
                      +.    ++|  ++++++++|+....+.|..    ..+++.+.|++
T Consensus       113 v~~~~~~~p~~~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~  157 (160)
T 1xvw_A          113 VFNEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAA  157 (160)
T ss_dssp             CEETTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             CccccCCCeeeeEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence            98    999  7888877767766666653    45667666654

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.26  E-value=8.9e-12  Score=95.75  Aligned_cols=91  Identities=12%  Similarity=0.110  Sum_probs=70.5

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-------c----hhHHHH-cC-------------
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------Y----KDLAEK-YG-------------   93 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-------~----~~l~~~-~~-------------   93 (239)
                      ++++++|.||++||++|+...|.+.++.++++.. ++.++.|+++.       .    .+.+++ ++             
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~-~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~g  126 (181)
T 2p31_A           48 RGSVSLVVNVASECGFTDQHYRALQQLQRDLGPH-HFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTG  126 (181)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSS
T ss_pred             CCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcC-CEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeecccCC
Confidence            5789999999999999999999999999998743 58899998752       1    123333 22             


Q ss_pred             ----------CCCCC-------eEEEEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412           94 ----------VSGFP-------TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus        94 ----------i~~~P-------t~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                                +.++|       +.+++.++|+....+.|..+.+++.+.|++.+
T Consensus       127 ~~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll  180 (181)
T 2p31_A          127 TGAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALV  180 (181)
T ss_dssp             TTSCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHTTC
T ss_pred             ccchhhhhhhhhcCCCccccceeEEEEcCCCCEEEEeCCCCCHHHHHHHHHHHh
Confidence                      34567       77777776677778888889999998887653

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=99.25  E-value=5.7e-12  Score=98.20  Aligned_cols=91  Identities=13%  Similarity=0.221  Sum_probs=75.8

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----------------------------chhHH
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA   89 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (239)
                      .+++++|.|| ++||++|+...|.+.++.+++.. .++.++.|++|.                            +..++
T Consensus        32 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  110 (198)
T 1zof_A           32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHE-KGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSIS  110 (198)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHH-TTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHH
T ss_pred             CCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHH-cCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHH
Confidence            5789999999 99999999999999999998864 358888887763                            35788


Q ss_pred             HHcCCC-----CCCeEEEEeCCCcCccccCCCC----CHHHHHHHHHHhh
Q 026412           90 EKYGVS-----GFPTLKFFPKGNKDGEEYGGGR----DLEDFVSFINEKC  130 (239)
Q Consensus        90 ~~~~i~-----~~Pt~~~~~~g~~~~~~~~g~~----~~~~l~~~l~~~~  130 (239)
                      +.|++.     ++|++++++++|+....+.|..    +.+++.+.|++..
T Consensus       111 ~~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  160 (198)
T 1zof_A          111 RDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALL  160 (198)
T ss_dssp             HHTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHHH
T ss_pred             HHhCCcccCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            999999     9999999987777766666643    7889999988764

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=99.25  E-value=1.9e-11  Score=96.17  Aligned_cols=91  Identities=11%  Similarity=0.026  Sum_probs=69.3

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc--------chh---HHH------HcC--------
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--------YKD---LAE------KYG--------   93 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~--------~~~---l~~------~~~--------   93 (239)
                      ++++++|+|||+||++|+...|.+.++.++++.. ++.++.|++++        ...   .++      +|+        
T Consensus        46 ~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~-g~~vv~v~~d~~~~~e~d~~~~i~~f~~~~~~~~~~~~~fp~l~d  124 (208)
T 2f8a_A           46 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPR-GLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEK  124 (208)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECCCSTTTTCSCHHHHHHHHHHTSSCTTCCCSSEEBCC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHccCC-CeEEEEEECCcccccCCCCHHHHHHHHHhcccccccccceEEEEE
Confidence            5789999999999999999999999999998743 58899998751        112   222      333        


Q ss_pred             ---------------------------------------------CCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHH
Q 026412           94 ---------------------------------------------VSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE  128 (239)
Q Consensus        94 ---------------------------------------------i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~  128 (239)
                                                                   |...|+.+++.++|+...++.|..+.+++.+.|++
T Consensus       125 ~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tflID~~G~i~~~~~g~~~~~~l~~~I~~  204 (208)
T 2f8a_A          125 CEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEA  204 (208)
T ss_dssp             CCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHH
T ss_pred             eecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEEEcCCCcEEEEeCCCCCHHHHHHHHHH
Confidence                                                         23347888887777777788888888888888876


Q ss_pred             hh
Q 026412          129 KC  130 (239)
Q Consensus       129 ~~  130 (239)
                      .+
T Consensus       205 ll  206 (208)
T 2f8a_A          205 LL  206 (208)
T ss_dssp             HH
T ss_pred             Hh
Confidence            64

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=99.25  E-value=7.7e-12  Score=96.53  Aligned_cols=91  Identities=14%  Similarity=0.132  Sum_probs=75.0

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-------------------------chhHHHHc
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------------------------YKDLAEKY   92 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~   92 (239)
                      .+++++|.|| ++||++|+...|.+.++.+.++.. ++.++.|++|.                         +..+++.|
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~-~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  108 (187)
T 1we0_A           30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKL-GVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQF  108 (187)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHT-TEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHT
T ss_pred             CCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHh
Confidence            4689999999 999999999999999999998643 58888887763                         34688899


Q ss_pred             CCC------CCCeEEEEeCCCcCccccCCC----CCHHHHHHHHHHhh
Q 026412           93 GVS------GFPTLKFFPKGNKDGEEYGGG----RDLEDFVSFINEKC  130 (239)
Q Consensus        93 ~i~------~~Pt~~~~~~g~~~~~~~~g~----~~~~~l~~~l~~~~  130 (239)
                      ++.      ++|++++++++|+....+.|.    ++.+++.+.|++..
T Consensus       109 ~v~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  156 (187)
T 1we0_A          109 DVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQ  156 (187)
T ss_dssp             TCEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHHH
T ss_pred             CCCcCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            998      899999997776776666664    37888888887765

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=99.24  E-value=2.5e-11  Score=81.27  Aligned_cols=75  Identities=27%  Similarity=0.390  Sum_probs=59.1

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch----hHHHHcC--CCCCCeEEEEeCCCcCccccCCCC
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYG--VSGFPTLKFFPKGNKDGEEYGGGR  117 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~----~l~~~~~--i~~~Pt~~~~~~g~~~~~~~~g~~  117 (239)
                      ++.|+++|||+|+++.+.+++++..++   ++.+..+|++.++    ++.++++  +.++|++  |.+| +..   .|  
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~---~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i--~~~g-~~i---~~--   71 (85)
T 1ego_A            3 TVIFGRSGCPYCVRAKDLAEKLSNERD---DFQYQYVDIRAEGITKEDLQQKAGKPVETVPQI--FVDQ-QHI---GG--   71 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHS---SCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEE--EETT-EEE---ES--
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhcCC---CceEEEEecccChHHHHHHHHHhCCCCceeCeE--EECC-EEE---EC--
Confidence            678999999999999999999998764   5889999987653    7899999  9999998  3354 322   22  


Q ss_pred             CHHHHHHHHHHhh
Q 026412          118 DLEDFVSFINEKC  130 (239)
Q Consensus       118 ~~~~l~~~l~~~~  130 (239)
                       .+++.+++++..
T Consensus        72 -~~~l~~~~~~~~   83 (85)
T 1ego_A           72 -YTDFAAWVKENL   83 (85)
T ss_dssp             -SHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhc
Confidence             368888887654

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=99.24  E-value=4.6e-12  Score=84.19  Aligned_cols=58  Identities=24%  Similarity=0.318  Sum_probs=47.0

Q ss_pred             EEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc-cchhHHHHcCCCCCCeEEE
Q 026412           43 ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-KYKDLAEKYGVSGFPTLKF  102 (239)
Q Consensus        43 vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~-~~~~l~~~~~i~~~Pt~~~  102 (239)
                      -++.||++||++|+.+.|.++++++.+.  .++.++.||.+ .+.+++++||+.++|++++
T Consensus         3 ~~~~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~gv~~vPt~~i   61 (80)
T 2k8s_A            3 SKAIFYHAGCPVCVSAEQAVANAIDPSK--YTVEIVHLGTDKARIAEAEKAGVKSVPALVI   61 (80)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHSCTTT--EEEEEEETTTCSSTHHHHHHHTCCEEEEEEE
T ss_pred             ceEEEeCCCCCchHHHHHHHHHHHHhcC--CeEEEEEecCChhhHHHHHHcCCCcCCEEEE
Confidence            3788999999999999999998876642  24566666665 5778899999999999876

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=99.22  E-value=1.6e-11  Score=94.26  Aligned_cols=90  Identities=16%  Similarity=0.122  Sum_probs=63.9

Q ss_pred             cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-----------chhHHHH-cCCC----------
Q 026412           38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-----------YKDLAEK-YGVS----------   95 (239)
Q Consensus        38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-----------~~~l~~~-~~i~----------   95 (239)
                      -++++++|.||++||++|+...|.+.++.+.++.. ++.++.|.++.           ...++++ +++.          
T Consensus        36 ~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~-~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d~~  114 (180)
T 3kij_A           36 YKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPS-HFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKIL  114 (180)
T ss_dssp             GTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTT-SEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCS
T ss_pred             cCCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccC-CeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceeeeeecc
Confidence            36789999999999999999999999999999743 58888887653           1345556 6543          


Q ss_pred             ----------------CCCe----EEEEeCCCcCccccCCCCCHHHHHHHHHH
Q 026412           96 ----------------GFPT----LKFFPKGNKDGEEYGGGRDLEDFVSFINE  128 (239)
Q Consensus        96 ----------------~~Pt----~~~~~~g~~~~~~~~g~~~~~~l~~~l~~  128 (239)
                                      ++|+    .+++.++|+....+.|..+.+.+.+.|.+
T Consensus       115 ~~~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~  167 (180)
T 3kij_A          115 GSEGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAA  167 (180)
T ss_dssp             STTCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEECTTCCGGGTHHHHHH
T ss_pred             CccccHHHHHHHhcCCCCccccceEEEECCCCCEEEEECCCCCHHHHHHHHHH
Confidence                            1455    55665555666666666666555555544

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=99.21  E-value=2.9e-11  Score=92.98  Aligned_cols=90  Identities=14%  Similarity=0.103  Sum_probs=68.3

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-------c----hhHHHHc---------------
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------Y----KDLAEKY---------------   92 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-------~----~~l~~~~---------------   92 (239)
                      .+++++|.||++||++|+...|.+.++.+++.. .++.++.|+++.       .    ...++++               
T Consensus        46 ~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~-~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  124 (183)
T 2obi_A           46 RGFVCIVTNVASQCGKTEVNYTQLVDLHARYAE-CGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGD  124 (183)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG-GTEEEEEEECCCSTTCCCSCHHHHHHHHHTTTCCSEEBCCCCCSST
T ss_pred             CCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhc-CCeEEEEEECCCCCCCCCCCHHHHHHHHHHcCCCceEEeeeccCCc
Confidence            578999999999999999999999999999874 358888887652       1    1112222               


Q ss_pred             ----------------C-----CCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHh
Q 026412           93 ----------------G-----VSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus        93 ----------------~-----i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~  129 (239)
                                      +     ++.+|++++++++|+....+.|..+.+++.++|++.
T Consensus       125 ~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l  182 (183)
T 2obi_A          125 DAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY  182 (183)
T ss_dssp             TSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEECTTSCTHHHHTTSGGG
T ss_pred             chhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHh
Confidence                            3     333599999987777777888888888888776543

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=99.21  E-value=4e-11  Score=94.87  Aligned_cols=81  Identities=25%  Similarity=0.423  Sum_probs=62.0

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEE--------------------------------------
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL--------------------------------------   80 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~v--------------------------------------   80 (239)
                      +++++++.||++|||+|++++|.+.++.+.     ++.+..+                                      
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~-----~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~  159 (216)
T 1eej_A           85 QEKHVITVFTDITCGYCHKLHEQMADYNAL-----GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVA  159 (216)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHT-----TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHhC-----CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCC
Confidence            467899999999999999999999988753     2333322                                      


Q ss_pred             ------eCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHh
Q 026412           81 ------DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus        81 ------d~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~  129 (239)
                            +++.+..++++|||+++||+ ++.+|    ..+.|..+.++|.++|.+.
T Consensus       160 ~~~~~~~v~~~~~l~~~~gV~gtPt~-v~~dG----~~~~G~~~~~~l~~~l~~~  209 (216)
T 1eej_A          160 PASCDVDIADHYALGVQLGVSGTPAV-VLSNG----TLVPGYQPPKEMKEFLDEH  209 (216)
T ss_dssp             CCCCSCCHHHHHHHHHHHTCCSSSEE-ECTTS----CEEESCCCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHcCCCccCEE-EEcCC----eEecCCCCHHHHHHHHHHh
Confidence                  11245678899999999998 45454    3567889999999999765

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=99.19  E-value=1.2e-10  Score=88.73  Aligned_cols=83  Identities=17%  Similarity=0.254  Sum_probs=65.1

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeC------------------------------------
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA------------------------------------   82 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~------------------------------------   82 (239)
                      ..+++++.|+.+|||||+++.|.+.++.+.++   ++.+...+.                                    
T Consensus        21 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~---~v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~~~~~   97 (175)
T 3gyk_A           21 EGDVTVVEFFDYNCPYCRRAMAEVQGLVDADP---NVRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMGMSGK   97 (175)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT---TEEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHTCSSC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHhCC---CEEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHhcCCC
Confidence            46789999999999999999999999998864   354444432                                    


Q ss_pred             ---------------------------------ccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHh
Q 026412           83 ---------------------------------DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus        83 ---------------------------------~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~  129 (239)
                                                       +.+..++.++||.++||+++  +|    ..+.|..+.+.+.++|.+.
T Consensus        98 ~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~i--~g----~~~~G~~~~~~l~~~i~~~  171 (175)
T 3gyk_A           98 ANETGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNGTPSFVV--ED----ALVPGFVEQSQLQDAVDRA  171 (175)
T ss_dssp             CSHHHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TT----EEECSCCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCccCCEEEE--CC----EEeeCCCCHHHHHHHHHHH
Confidence                                             22345778999999999876  44    3567999999999999875


Q ss_pred             h
Q 026412          130 C  130 (239)
Q Consensus       130 ~  130 (239)
                      .
T Consensus       172 l  172 (175)
T 3gyk_A          172 R  172 (175)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=99.19  E-value=4.1e-11  Score=92.35  Aligned_cols=90  Identities=13%  Similarity=0.036  Sum_probs=65.9

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-----------chhHHHHcCCC------------
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-----------YKDLAEKYGVS------------   95 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-----------~~~l~~~~~i~------------   95 (239)
                      ++++++|.||++||++|+...|.+.++.++++.. ++.++.|++|.           ..++++++++.            
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~-~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  126 (185)
T 2gs3_A           48 RGFVCIVTNVASQGGKTEVNYTQLVDLHARYAEC-GLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGD  126 (185)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECCTTTTCCCSCHHHHHHHHHHTTCCSEEBCCCBSSST
T ss_pred             CCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcC-CeEEEEEECcccCCCCCCCHHHHHHHHHHcCCCCeeeeeeccCCh
Confidence            5789999999999999999999999999998743 58888887752           12233333331            


Q ss_pred             ------------------------CCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHh
Q 026412           96 ------------------------GFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus        96 ------------------------~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~  129 (239)
                                              .+|+.++++++|+....+.|..+.+++.+.|++.
T Consensus       127 ~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l  184 (185)
T 2gs3_A          127 DAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY  184 (185)
T ss_dssp             TBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEECTTSCGGGGGGGHHHH
T ss_pred             hhhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEeeCCCCCHHHHHHHHHHh
Confidence                                    2477878776667667777777777776666543

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=99.15  E-value=9.3e-11  Score=91.61  Aligned_cols=91  Identities=15%  Similarity=0.202  Sum_probs=74.2

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----------------------------chhHH
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA   89 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (239)
                      .+++++|.|| ++||++|+...|.+.++.+++.. .++.++.|++|.                            ..+++
T Consensus        35 ~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~-~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~  113 (202)
T 1uul_A           35 KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSD-IGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIM  113 (202)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHT-TTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHH
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHHH
Confidence            4689999999 99999999999999999999864 368888888763                            34688


Q ss_pred             HHcCCC------CCCeEEEEeCCCcCccccCC----CCCHHHHHHHHHHhh
Q 026412           90 EKYGVS------GFPTLKFFPKGNKDGEEYGG----GRDLEDFVSFINEKC  130 (239)
Q Consensus        90 ~~~~i~------~~Pt~~~~~~g~~~~~~~~g----~~~~~~l~~~l~~~~  130 (239)
                      +.|++.      ++|++++++++|+....+.|    .++.+++.+.|+...
T Consensus       114 ~~ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ell~~l~~l~  164 (202)
T 1uul_A          114 KSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQ  164 (202)
T ss_dssp             HHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HHcCCccCCCCceeeEEEEECCCCEEEEEEeCCCCCCCCHHHHHHHHHHhh
Confidence            899999      99999999877776555544    356789988887654

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=99.13  E-value=1.1e-10  Score=91.20  Aligned_cols=92  Identities=15%  Similarity=0.130  Sum_probs=67.2

Q ss_pred             CCCcEEEEEECCCChH-HhhHhHHHHHHHHHccC--CCCeEEEEEeCcc----------------------------chh
Q 026412           39 QDRGALVEFYAPWCGH-CKNLAPTYEKVAAAFTL--EDDVVVANLDADK----------------------------YKD   87 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~-C~~~~~~~~~~a~~~~~--~~~v~~~~vd~~~----------------------------~~~   87 (239)
                      .+++++|+||++||++ |....|.+.++.+.+..  ..++.++.|++|.                            ...
T Consensus        40 ~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~  119 (200)
T 2b7k_A           40 LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKN  119 (200)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHcCCCceEEeCCHHHHHH
Confidence            5789999999999997 99999999998877753  2367777777662                            125


Q ss_pred             HHHHcCCC-CCC---------------eEEEEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412           88 LAEKYGVS-GFP---------------TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus        88 l~~~~~i~-~~P---------------t~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      +++.|++. +.|               ++++++++|+....+.|..+.+.+.+.|.+.+
T Consensus       120 ~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g~~~~~~~~~~i~~~l  178 (200)
T 2b7k_A          120 ACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHV  178 (200)
T ss_dssp             HHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHH
T ss_pred             HHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence            77888886 344               67777777777777888777777777766554

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=99.13  E-value=2e-10  Score=90.47  Aligned_cols=80  Identities=20%  Similarity=0.362  Sum_probs=61.3

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEE--Ee-----------------------------------
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN--LD-----------------------------------   81 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~--vd-----------------------------------   81 (239)
                      +.+++++.|+++|||||++++|.+.++.+.     ++.+..  +.                                   
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~~-----~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~  159 (211)
T 1t3b_A           85 NEKHVVTVFMDITCHYCHLLHQQLKEYNDL-----GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPK  159 (211)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHT-----TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCS
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHhC-----CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCC
Confidence            467899999999999999999999987652     233332  21                                   


Q ss_pred             -------CccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHH
Q 026412           82 -------ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE  128 (239)
Q Consensus        82 -------~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~  128 (239)
                             ++.+.++++++||+++||+++ .+| +   .+.|..+.++|.++|++
T Consensus       160 ~~~~~~~v~~~~~l~~~~gV~gTPt~vi-~nG-~---~~~G~~~~~~l~~~l~~  208 (211)
T 1t3b_A          160 EVKTPNIVKKHYELGIQFGVRGTPSIVT-STG-E---LIGGYLKPADLLRALEE  208 (211)
T ss_dssp             SCCCSSHHHHHHHHHHHHTCCSSCEEEC-TTS-C---CCCSCCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCCcCCEEEE-eCC-E---EecCCCCHHHHHHHHHh
Confidence                   123457889999999999876 455 2   56788999999999975

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=99.12  E-value=2.5e-10  Score=86.57  Aligned_cols=93  Identities=16%  Similarity=0.245  Sum_probs=71.2

Q ss_pred             CCCcEEEEEECCCCh-HHhhHhHHHHHHHHHccCCC-CeEEEEEeCcc---c-------------------------hhH
Q 026412           39 QDRGALVEFYAPWCG-HCKNLAPTYEKVAAAFTLED-DVVVANLDADK---Y-------------------------KDL   88 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~-~C~~~~~~~~~~a~~~~~~~-~v~~~~vd~~~---~-------------------------~~l   88 (239)
                      .+++++|.||++||+ +|....|.+.++.+.++..+ ++.++.|++|.   .                         .++
T Consensus        32 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d~~~~~  111 (174)
T 1xzo_A           32 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSE  111 (174)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHH
T ss_pred             CCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeCCCHHH
Confidence            578999999999999 99999999999999887543 58888888751   1                         111


Q ss_pred             HHH----------------cCCCCCCeEEEEeCCCcCccccCCCC--CHHHHHHHHHHhhC
Q 026412           89 AEK----------------YGVSGFPTLKFFPKGNKDGEEYGGGR--DLEDFVSFINEKCG  131 (239)
Q Consensus        89 ~~~----------------~~i~~~Pt~~~~~~g~~~~~~~~g~~--~~~~l~~~l~~~~~  131 (239)
                      .+.                |++...|++++++++|+....+.|..  +.+++.+.|++.+.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~  172 (174)
T 1xzo_A          112 IEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSAST  172 (174)
T ss_dssp             HHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHHHHHHHHHHHTC
T ss_pred             HHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCCCCCCHHHHHHHHHHHHh
Confidence            222                24567899888887777777777765  58999999987753

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=99.12  E-value=3.7e-10  Score=85.25  Aligned_cols=89  Identities=16%  Similarity=0.165  Sum_probs=69.2

Q ss_pred             CCCcEEEEEECCC-ChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-----------------------chhHHHHcCC
Q 026412           39 QDRGALVEFYAPW-CGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-----------------------YKDLAEKYGV   94 (239)
Q Consensus        39 ~~k~vlV~F~a~w-C~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-----------------------~~~l~~~~~i   94 (239)
                      .+++++|.||++| |++|+...|.+.++.+++   .++.++.|+.|.                       +.++++.|++
T Consensus        43 ~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~---~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v  119 (167)
T 2jsy_A           43 KGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL---GDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEAFGV  119 (167)
T ss_dssp             TTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH---SSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHHTTC
T ss_pred             CCCeEEEEEecCCCCCchHHHHHHHHHHHHHc---CCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHHhCC
Confidence            5789999999999 999999999999999998   357777776652                       2467788998


Q ss_pred             CC------CCeEEEEeCCCcCccccCCC-----CCHHHHHHHHHHhh
Q 026412           95 SG------FPTLKFFPKGNKDGEEYGGG-----RDLEDFVSFINEKC  130 (239)
Q Consensus        95 ~~------~Pt~~~~~~g~~~~~~~~g~-----~~~~~l~~~l~~~~  130 (239)
                      ..      .|++++++++|+....+.|.     .+.+++.+.|++.+
T Consensus       120 ~~~~~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~ll  166 (167)
T 2jsy_A          120 YIKELRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAKALV  166 (167)
T ss_dssp             BBTTTCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHHHHHH
T ss_pred             ccccCCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHHHHhh
Confidence            76      49999998777766666442     34577888777653

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=99.11  E-value=1.4e-10  Score=91.92  Aligned_cols=91  Identities=16%  Similarity=0.231  Sum_probs=74.1

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----------------------------chhHH
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA   89 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (239)
                      .+++++|.|| ++||++|+...|.+.++.+++.. .++.++.|++|.                            ...++
T Consensus        55 ~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~-~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~  133 (220)
T 1zye_A           55 KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHD-VNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQIS  133 (220)
T ss_dssp             TTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHH-TTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHH
Confidence            4689999999 99999999999999999999863 358888887653                            24688


Q ss_pred             HHcCCC------CCCeEEEEeCCCcCccccCC----CCCHHHHHHHHHHhh
Q 026412           90 EKYGVS------GFPTLKFFPKGNKDGEEYGG----GRDLEDFVSFINEKC  130 (239)
Q Consensus        90 ~~~~i~------~~Pt~~~~~~g~~~~~~~~g----~~~~~~l~~~l~~~~  130 (239)
                      +.|++.      .+|++++++++|+....+.|    .++.+++.+.|+...
T Consensus       134 ~~ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~~~~~~~ell~~l~~l~  184 (220)
T 1zye_A          134 RDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQ  184 (220)
T ss_dssp             HHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HHhCCeecCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            999998      99999999877676555444    367899999988765

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=99.10  E-value=1.1e-10  Score=90.35  Aligned_cols=91  Identities=16%  Similarity=0.247  Sum_probs=73.2

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----------------------------chhHH
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA   89 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (239)
                      .+++++|.|| ++||++|+...|.+.++.+++.. .++.++.|++|.                            +..++
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~  108 (192)
T 2h01_A           30 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKE-RNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIA  108 (192)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHH-TTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHH
Confidence            5789999999 99999999999999999998863 358888887753                            24688


Q ss_pred             HHcCCC-----CCCeEEEEeCCCcCccccCCC----CCHHHHHHHHHHhh
Q 026412           90 EKYGVS-----GFPTLKFFPKGNKDGEEYGGG----RDLEDFVSFINEKC  130 (239)
Q Consensus        90 ~~~~i~-----~~Pt~~~~~~g~~~~~~~~g~----~~~~~l~~~l~~~~  130 (239)
                      +.|++.     .+|++++++++|+....+.|.    ++.+++.+.|+...
T Consensus       109 ~~~gv~~~~g~~~P~~~liD~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  158 (192)
T 2h01_A          109 RSYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQ  158 (192)
T ss_dssp             HHTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHHH
T ss_pred             HHhCCcCcCCceeeEEEEEcCCCEEEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence            999999     899999998776766555553    46788888887654

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=99.09  E-value=4.3e-09  Score=83.66  Aligned_cols=108  Identities=10%  Similarity=0.101  Sum_probs=87.8

Q ss_pred             cCCCcEEcChhhHHHHhcCC-CcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc--cchhHHHHcCCC--
Q 026412           21 LADDVVVLTEDNFEKEVGQD-RGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD--KYKDLAEKYGVS--   95 (239)
Q Consensus        21 ~~~~v~~l~~~~f~~~~~~~-k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~--   95 (239)
                      ..+.+.+++.+|+.+....+ +.+++.|+.+||++|..+.+.|.++|+.++  +++.|+.+|++  .+..+++.||+.  
T Consensus       111 ~~plv~e~t~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k--~~i~F~~vd~~~~~~~~~l~~fgl~~~  188 (227)
T 4f9z_D          111 SLHMVTEYNPVTVIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAAKLFQ--GKILFILVDSGMKENGKVISFFKLKES  188 (227)
T ss_dssp             CCCSEEECCHHHHHHHHHSSCCEEEEEEECTTSTTHHHHHHHHHHHHHHTT--TTCEEEEEETTSGGGHHHHHHTTCCGG
T ss_pred             CCCceeecCcccHHHHhccCCceEEEEEEcCCcchHHHHHHHHHHHHHHhh--CCEEEEEeCCccHhHHHHHHHcCCCcc
Confidence            35678999999999988655 445566779999999999999999999987  45999999996  467788999998  


Q ss_pred             CCCeEEEEeCCCcCcccc-CCCCCHHHHHHHHHHhh
Q 026412           96 GFPTLKFFPKGNKDGEEY-GGGRDLEDFVSFINEKC  130 (239)
Q Consensus        96 ~~Pt~~~~~~g~~~~~~~-~g~~~~~~l~~~l~~~~  130 (239)
                      ++|++.++..++.....+ .|..+.+.|.+|+++..
T Consensus       189 ~~P~~~i~~~~~~~ky~~~~~~~t~~~i~~Fv~~~~  224 (227)
T 4f9z_D          189 QLPALAIYQTLDDEWDTLPTAEVSVEHVQNFCDGFL  224 (227)
T ss_dssp             GCSEEEEEESSSCCEEEETTCCCCHHHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCccccCCcCCCCHHHHHHHHHHHh
Confidence            799999998553322333 37789999999998865

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=99.09  E-value=2e-10  Score=90.62  Aligned_cols=91  Identities=15%  Similarity=0.234  Sum_probs=73.1

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----------------------------chhHH
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA   89 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (239)
                      .+++++|.|| ++||++|+...|.+.++++++.. .++.++.|++|.                            +.+++
T Consensus        51 ~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~-~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~  129 (213)
T 2i81_A           51 GKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHE-RNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSIS  129 (213)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHH-TTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHH
T ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHHH
Confidence            5789999999 99999999999999999999863 358888887653                            34688


Q ss_pred             HHcCCC-----CCCeEEEEeCCCcCccccCCC----CCHHHHHHHHHHhh
Q 026412           90 EKYGVS-----GFPTLKFFPKGNKDGEEYGGG----RDLEDFVSFINEKC  130 (239)
Q Consensus        90 ~~~~i~-----~~Pt~~~~~~g~~~~~~~~g~----~~~~~l~~~l~~~~  130 (239)
                      +.|++.     .+|++++++++|+....+.|.    ++.+++.+.|+...
T Consensus       130 ~~ygv~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~ell~~l~~l~  179 (213)
T 2i81_A          130 KDYNVLFDDSVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAIQ  179 (213)
T ss_dssp             HHTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HHhCCccccCCcccEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            899998     899999998777765555442    56888888887654

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=99.07  E-value=4.3e-10  Score=89.22  Aligned_cols=89  Identities=13%  Similarity=0.254  Sum_probs=70.9

Q ss_pred             CCCcEEEEEEC-CCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----------------------------chhHH
Q 026412           39 QDRGALVEFYA-PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA   89 (239)
Q Consensus        39 ~~k~vlV~F~a-~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (239)
                      .+++++|.||+ +||++|+...|.+.++.+++.. .++.++.|++|.                            ...++
T Consensus        68 ~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~-~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~  146 (222)
T 3ztl_A           68 RGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNS-RNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEIS  146 (222)
T ss_dssp             TTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHT-TTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHH-CCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHHH
Confidence            57899999996 9999999999999999999974 358888887763                            23577


Q ss_pred             HHcCCC------CCCeEEEEeCCCcCccccCCC----CCHHHHHHHHHH
Q 026412           90 EKYGVS------GFPTLKFFPKGNKDGEEYGGG----RDLEDFVSFINE  128 (239)
Q Consensus        90 ~~~~i~------~~Pt~~~~~~g~~~~~~~~g~----~~~~~l~~~l~~  128 (239)
                      +.|++.      .+|++++++++|+....+.|.    +..+++.+.|+.
T Consensus       147 ~~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~~il~~l~~  195 (222)
T 3ztl_A          147 KAYGVFDEEDGNAFRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDA  195 (222)
T ss_dssp             HHTTCBCTTTSSBCEEEEEECTTSEEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HHcCCeecCCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence            889998      899999998777766665543    456777777754

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=99.04  E-value=7.9e-10  Score=84.33  Aligned_cols=89  Identities=16%  Similarity=0.207  Sum_probs=66.8

Q ss_pred             CCCcEEEEEECCC-ChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----------------------chhHHHHcCCC
Q 026412           39 QDRGALVEFYAPW-CGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------YKDLAEKYGVS   95 (239)
Q Consensus        39 ~~k~vlV~F~a~w-C~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----------------------~~~l~~~~~i~   95 (239)
                      .+++++|.||++| |++|+...|.+.++.++    .++.++.|+.|.                      +..+++.|++.
T Consensus        43 ~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~----~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~  118 (175)
T 1xvq_A           43 RGKSVLLNIFPSVDTPVCATSVRTFDERAAA----SGATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVT  118 (175)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHH----TTCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCB
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHhh----cCCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHHHHhCCc
Confidence            5789999999999 99999999999999887    357788887661                      24688899998


Q ss_pred             CC---------CeEEEEeCCCcCccccCC--C---CCHHHHHHHHHHhhC
Q 026412           96 GF---------PTLKFFPKGNKDGEEYGG--G---RDLEDFVSFINEKCG  131 (239)
Q Consensus        96 ~~---------Pt~~~~~~g~~~~~~~~g--~---~~~~~l~~~l~~~~~  131 (239)
                      ..         |++++++++|+....+.|  .   .+.+++++.+.+..|
T Consensus       119 ~~~~~~~g~~~p~~~lid~~G~I~~~~~g~~~~~~~~~~~~l~~l~~~~~  168 (175)
T 1xvq_A          119 IADGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALGATSG  168 (175)
T ss_dssp             BCSSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHHHHTC-
T ss_pred             ccccccCCcccceEEEECCCCeEEEEEECCCcCCCCCHHHHHHHHHhhcC
Confidence            76         899988877776666642  2   345666666655444

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=99.04  E-value=1.2e-09  Score=86.15  Aligned_cols=44  Identities=16%  Similarity=0.228  Sum_probs=38.2

Q ss_pred             cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc
Q 026412           38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD   83 (239)
Q Consensus        38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~   83 (239)
                      -++|+++|+|||+||++|+ ..|.+.++.++|... ++.++.|.++
T Consensus        54 ~~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~-g~~Vlgvs~d   97 (215)
T 2i3y_A           54 YVGKHILFVNVATYCGLTA-QYPELNALQEELKPY-GLVVLGFPCN   97 (215)
T ss_dssp             GTTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGG-TEEEEEEECC
T ss_pred             hCCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccC-CeEEEEEEcc
Confidence            3578999999999999999 789999999999743 5889988865

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=99.01  E-value=1.2e-09  Score=87.86  Aligned_cols=88  Identities=17%  Similarity=0.253  Sum_probs=64.9

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeC------------------------------------
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA------------------------------------   82 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~------------------------------------   82 (239)
                      +.+.+++.|+.+|||+|+++.|.+.++.+.    +++.+..+..                                    
T Consensus        96 ~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~----g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l  171 (241)
T 1v58_A           96 DAPVIVYVFADPFCPYCKQFWQQARPWVDS----GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKL  171 (241)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHT----TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCC
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHhC----CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCC
Confidence            356789999999999999999999887664    2565554332                                    


Q ss_pred             --------------ccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412           83 --------------DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus        83 --------------~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                                    +.+..+++++||+++||+++..++|. .....|..+.+.|.++|++...
T Consensus       172 ~~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~-~~~~~G~~~~~~L~~~l~~~~~  233 (241)
T 1v58_A          172 NVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENT-LQQAVGLPDQKTLNIIMGNKLQ  233 (241)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTE-EEEEESSCCHHHHHHHTTC---
T ss_pred             CccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCC-EEEecCCCCHHHHHHHHHHHHH
Confidence                          12346778999999999988864333 2467899999999999876543

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=99.00  E-value=3.2e-10  Score=90.24  Aligned_cols=103  Identities=14%  Similarity=0.169  Sum_probs=83.9

Q ss_pred             CCCcEEc-ChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeE
Q 026412           22 ADDVVVL-TEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL  100 (239)
Q Consensus        22 ~~~v~~l-~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  100 (239)
                      ++.+..+ +.+++++.+..++.++|-|+++||   ..+.+.|.++|+.+.   ++.|+..   .+.+++++|++++ |++
T Consensus         8 ~~~~~~l~s~~~~~~~l~~~~v~vVgff~~~~---~~~~~~f~~~A~~l~---~~~F~~t---~~~~v~~~~~v~~-p~i   77 (227)
T 4f9z_D            8 AQEPTWLTDVPAAMEFIAATEVAVIGFFQDLE---IPAVPILHSMVQKFP---GVSFGIS---TDSEVLTHYNITG-NTI   77 (227)
T ss_dssp             -CCCEECCSHHHHHHHHHTSSEEEEEECSCSC---STHHHHHHHHTTTCT---TSEEEEE---CCHHHHHHTTCCS-SEE
T ss_pred             cCCCeeeCCHHHHHHHHhcCCeEEEEEecCCC---chhHHHHHHHHHhCC---CceEEEE---CCHHHHHHcCCCC-CeE
Confidence            3445555 669999999889999999999996   588999999999983   6888764   4678999999998 999


Q ss_pred             EEEeCCCcCccccCC----CCCHHHHHHHHHHhhCCCC
Q 026412          101 KFFPKGNKDGEEYGG----GRDLEDFVSFINEKCGTSR  134 (239)
Q Consensus       101 ~~~~~g~~~~~~~~g----~~~~~~l~~~l~~~~~~~~  134 (239)
                      ++|+++......|.|    .++.+.|.+||....-+..
T Consensus        78 ~lfk~~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~plv  115 (227)
T 4f9z_D           78 CLFRLVDNEQLNLEDEDIESIDATKLSRFIEINSLHMV  115 (227)
T ss_dssp             EEEETTTTEEEEECHHHHHTCCHHHHHHHHHHHCCCSE
T ss_pred             EEEEecCcccccccccccCCCCHHHHHHHHHHhCCCce
Confidence            999976555667774    7999999999999875543

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=98.99  E-value=1.4e-09  Score=81.71  Aligned_cols=90  Identities=7%  Similarity=0.096  Sum_probs=68.9

Q ss_pred             CCCcEEEEEEC-CCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc---------------------chhHHHHcCCCC
Q 026412           39 QDRGALVEFYA-PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------YKDLAEKYGVSG   96 (239)
Q Consensus        39 ~~k~vlV~F~a-~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~---------------------~~~l~~~~~i~~   96 (239)
                      .+++++|.||+ +||++|....|.+.++.+++... ++.++.|.+|.                     ...+++.|++..
T Consensus        34 ~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~-~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  112 (163)
T 3gkn_A           34 AGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKA-GAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIK  112 (163)
T ss_dssp             TTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCEE
T ss_pred             CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHhCCcc
Confidence            46799999998 99999999999999999998643 57777777652                     236778888876


Q ss_pred             ------------CCeEEEEeCCCcCccccCCC---CCHHHHHHHHHHh
Q 026412           97 ------------FPTLKFFPKGNKDGEEYGGG---RDLEDFVSFINEK  129 (239)
Q Consensus        97 ------------~Pt~~~~~~g~~~~~~~~g~---~~~~~l~~~l~~~  129 (239)
                                  .|++++++++|+....+.+.   ...+++.+.+++.
T Consensus       113 ~~~~~~~~~~~~~p~~~lid~~G~i~~~~~~~~~~~~~~~il~~l~~l  160 (163)
T 3gkn_A          113 EKNMYGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLAALKAH  160 (163)
T ss_dssp             EEEETTEEEEEECCEEEEECTTSCEEEEECSCCSTTHHHHHHHHHHHH
T ss_pred             ccccccccccCcceEEEEECCCCeEEEEEcCCCcccCHHHHHHHHHHH
Confidence                        89999998877766555443   3456666666654

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=98.95  E-value=2.8e-09  Score=82.43  Aligned_cols=87  Identities=28%  Similarity=0.368  Sum_probs=65.0

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc-----------------------------------
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-----------------------------------   83 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~-----------------------------------   83 (239)
                      ..+++++.||.+|||||+.+.|.+.++.+.++.  ++.+..+.+.                                   
T Consensus        24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~p~~~~~~~~~aa~a~~aa~~~g~~~~~~~~lf~~~~~~  101 (192)
T 3h93_A           24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPA--DVHFVRLPALFGGIWNVHGQMFLTLESMGVEHDVHNAVFEAIHKE  101 (192)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCT--TEEEEEEECCCSTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTS
T ss_pred             CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCC--CeEEEEEehhhccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            467899999999999999999999999998864  5666655431                                   


Q ss_pred             --------------------------------------cchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHH
Q 026412           84 --------------------------------------KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSF  125 (239)
Q Consensus        84 --------------------------------------~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~  125 (239)
                                                            .+...+.++||.++||+++  +| +......|..+.+.+.+.
T Consensus       102 ~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~v--ng-~~~~~~~G~~~~e~l~~~  178 (192)
T 3h93_A          102 HKKLATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAKKLAMAYQVTGVPTMVV--NG-KYRFDIGSAGGPEETLKL  178 (192)
T ss_dssp             CCCCCSHHHHHHHHHTTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TT-TEEEEHHHHTSHHHHHHH
T ss_pred             CcCCCCHHHHHHHHHHcCCCHHHHHHHhhCHHHHHHHHHHHHHHHHhCCCCCCeEEE--CC-EEEecccccCCHHHHHHH
Confidence                                                  0113566789999999876  44 444444477788888888


Q ss_pred             HHHhh
Q 026412          126 INEKC  130 (239)
Q Consensus       126 l~~~~  130 (239)
                      |+..+
T Consensus       179 i~~l~  183 (192)
T 3h93_A          179 ADYLI  183 (192)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87654

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=98.94  E-value=3.8e-09  Score=82.92  Aligned_cols=44  Identities=9%  Similarity=0.046  Sum_probs=37.7

Q ss_pred             cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc
Q 026412           38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD   83 (239)
Q Consensus        38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~   83 (239)
                      -.+|++||+||++||++| ...|.+.++.++|... ++.++.|.++
T Consensus        36 ~kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~-g~~vlgvs~d   79 (207)
T 2r37_A           36 YAGKYVLFVNVASYGGLT-GQYIELNALQEELAPF-GLVILGFPCN   79 (207)
T ss_dssp             GTTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGG-TEEEEEEECC
T ss_pred             hCCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccC-CEEEEEEECc
Confidence            357899999999999999 6789999999999744 5888888765

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=98.94  E-value=7.2e-10  Score=73.39  Aligned_cols=70  Identities=13%  Similarity=0.190  Sum_probs=50.6

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHH---HcCCCCCCeEEEEeCCCcCccccCCCCCHH
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAE---KYGVSGFPTLKFFPKGNKDGEEYGGGRDLE  120 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~---~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~  120 (239)
                      ++.|+++||++|+++.+.+++.        ++.+..+|++.++++.+   ++++.++|++  +.+| ..    .++.+.+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~--------~i~~~~vdi~~~~~~~~~~~~~g~~~vP~~--~~~g-~~----~~g~~~~   67 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR--------GFDFEMINVDRVPEAAEALRAQGFRQLPVV--IAGD-LS----WSGFRPD   67 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEETTTCHHHHHHHHHTTCCSSCEE--EETT-EE----EESCCHH
T ss_pred             EEEEcCCCChhHHHHHHHHHHC--------CCCeEEEECCCCHHHHHHHHHhCCCccCEE--EECC-EE----EecCCHH
Confidence            6789999999999999988753        35577888887655544   5899999998  3344 21    2345677


Q ss_pred             HHHHHHHH
Q 026412          121 DFVSFINE  128 (239)
Q Consensus       121 ~l~~~l~~  128 (239)
                      ++.+++++
T Consensus        68 ~l~~~l~~   75 (81)
T 1h75_A           68 MINRLHPA   75 (81)
T ss_dssp             HHGGGSCC
T ss_pred             HHHHHHhc
Confidence            77776643

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=98.94  E-value=2.8e-09  Score=69.23  Aligned_cols=68  Identities=13%  Similarity=0.286  Sum_probs=51.2

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHH---HcCCCCCCeEEEEeCCCcCccccCCCCCHH
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAE---KYGVSGFPTLKFFPKGNKDGEEYGGGRDLE  120 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~---~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~  120 (239)
                      ++.|+++||++|++..+.+++.        ++.+..+|++.++++.+   ++++.++|++++  +| ..    .++.+.+
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~--------~i~~~~~di~~~~~~~~~~~~~~~~~vP~l~~--~g-~~----~~g~~~~   67 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA--------GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DG-EH----WSGFRPE   67 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TT-EE----EESCCHH
T ss_pred             EEEEeCCCChHHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHcCCCccCEEEE--CC-eE----EcCCCHH
Confidence            6789999999999999988754        35567788887666555   899999999863  44 31    2345788


Q ss_pred             HHHHHH
Q 026412          121 DFVSFI  126 (239)
Q Consensus       121 ~l~~~l  126 (239)
                      .+.+++
T Consensus        68 ~l~~~l   73 (75)
T 1r7h_A           68 RIKQLQ   73 (75)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888776

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=98.93  E-value=4.1e-09  Score=78.85  Aligned_cols=77  Identities=14%  Similarity=0.051  Sum_probs=56.4

Q ss_pred             CCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc---------------------chhHHHHcCCCCC
Q 026412           40 DRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------YKDLAEKYGVSGF   97 (239)
Q Consensus        40 ~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~---------------------~~~l~~~~~i~~~   97 (239)
                      +++++|+|| ++||++|....|.+.++.+++...+  .++.|.+|.                     +..+++.|++...
T Consensus        35 ~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~  112 (159)
T 2a4v_A           35 NRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA--AVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKT  112 (159)
T ss_dssp             CSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC--EEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSS
T ss_pred             CCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC--cEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence            347899987 9999999999999999999997554  566665542                     2367888999888


Q ss_pred             C------eEEEEeCCCcCccccCCCCCH
Q 026412           98 P------TLKFFPKGNKDGEEYGGGRDL  119 (239)
Q Consensus        98 P------t~~~~~~g~~~~~~~~g~~~~  119 (239)
                      |      +.+++++ |+....+.|....
T Consensus       113 p~~g~~~~~~li~~-G~i~~~~~g~~~~  139 (159)
T 2a4v_A          113 PLSGSIRSHFIFVD-GKLKFKRVKISPE  139 (159)
T ss_dssp             SSSCBCCEEEEEET-TEEEEEEESCCHH
T ss_pred             ccCCccceEEEEcC-CEEEEEEccCCcc
Confidence            8      5555544 4666666665433

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=98.90  E-value=9.2e-09  Score=79.64  Aligned_cols=44  Identities=27%  Similarity=0.466  Sum_probs=37.7

Q ss_pred             cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc
Q 026412           38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD   83 (239)
Q Consensus        38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~   83 (239)
                      ..++++++.||++|||+|+++.|.+.++.+.++.  ++.+..++++
T Consensus        23 ~~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~~~~   66 (195)
T 3hd5_A           23 TPGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQ--DVVLKQVPIA   66 (195)
T ss_dssp             STTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCT--TEEEEEEECC
T ss_pred             CCCCeEEEEEECCCCccHHHhhHHHHHHHHHCCC--CeEEEEEecc
Confidence            3578899999999999999999999999999863  5777777764

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=98.89  E-value=6e-09  Score=79.05  Aligned_cols=96  Identities=13%  Similarity=0.122  Sum_probs=72.6

Q ss_pred             CCCcEEEEEECCCCh-HHhhHhHHHHHHHHHccCC-CCeEEEEEeCcc-------------------------------c
Q 026412           39 QDRGALVEFYAPWCG-HCKNLAPTYEKVAAAFTLE-DDVVVANLDADK-------------------------------Y   85 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~-~C~~~~~~~~~~a~~~~~~-~~v~~~~vd~~~-------------------------------~   85 (239)
                      .+++++|.||++||+ .|....|.+.++.+.+... .++.++.|.+|.                               .
T Consensus        27 ~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~  106 (170)
T 3me7_A           27 KGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDL  106 (170)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCCSSSEEEEEESSHHHH
T ss_pred             CCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCHHHH
Confidence            478999999999997 6999999999999998642 357777776541                               1


Q ss_pred             hhHHHHcCC---------CCCCeEEEEeCCCcCccccCCC-CCHHHHHHHHHHhhCCCC
Q 026412           86 KDLAEKYGV---------SGFPTLKFFPKGNKDGEEYGGG-RDLEDFVSFINEKCGTSR  134 (239)
Q Consensus        86 ~~l~~~~~i---------~~~Pt~~~~~~g~~~~~~~~g~-~~~~~l~~~l~~~~~~~~  134 (239)
                      ..+++.||+         ...|+++++++.|+....|.|. .+++++.+.|.+..+.+.
T Consensus       107 ~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~~~~~~~i~~~l~~~~~~~~  165 (170)
T 3me7_A          107 FKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGVNYNYLEFVNALRLARGEGH  165 (170)
T ss_dssp             HHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESSSCCHHHHHHHHHHHTTCSC
T ss_pred             HHHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCCCCCHHHHHHHHHHhhcccc
Confidence            245555553         3457888888777766666774 789999999999876544

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=98.87  E-value=3.4e-09  Score=84.00  Aligned_cols=91  Identities=18%  Similarity=0.275  Sum_probs=69.9

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----------------------------chhHH
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA   89 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (239)
                      .+++++|+|| ++||++|....|.+.++.+++.. .++.++.|.+|.                            ...++
T Consensus        55 ~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~-~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~  133 (221)
T 2c0d_A           55 GQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFEN-KNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDIS  133 (221)
T ss_dssp             TTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHH-TTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHH
T ss_pred             CCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHH-CCCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHHH
Confidence            5789999999 99999999999999999988863 357777776542                            12466


Q ss_pred             HHcCC-----CCCCeEEEEeCCCcCccccCC----CCCHHHHHHHHHHhh
Q 026412           90 EKYGV-----SGFPTLKFFPKGNKDGEEYGG----GRDLEDFVSFINEKC  130 (239)
Q Consensus        90 ~~~~i-----~~~Pt~~~~~~g~~~~~~~~g----~~~~~~l~~~l~~~~  130 (239)
                      +.|++     ..+|++++++++|+....+.|    .++.+++.+.|+...
T Consensus       134 ~~ygv~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~L~  183 (221)
T 2c0d_A          134 KNYNVLYDNSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSII  183 (221)
T ss_dssp             HHTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HHcCCcccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            77888     368999999877776555544    357888888887654

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=98.87  E-value=6.3e-09  Score=81.83  Aligned_cols=91  Identities=12%  Similarity=0.154  Sum_probs=70.1

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----------------------------chhHH
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA   89 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (239)
                      .+++++|+|| ++||++|....|.+.++.+++.. .++.++.|.+|.                            ...++
T Consensus        47 ~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~-~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~  125 (211)
T 2pn8_A           47 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRS-INTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQIS  125 (211)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHT-TTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCHHHHHHHHHHhhhccCccCCceEEEECCchHHH
Confidence            5689999999 99999999999999999999864 357777776542                            12567


Q ss_pred             HHcCCC------CCCeEEEEeCCCcCccccCCC----CCHHHHHHHHHHhh
Q 026412           90 EKYGVS------GFPTLKFFPKGNKDGEEYGGG----RDLEDFVSFINEKC  130 (239)
Q Consensus        90 ~~~~i~------~~Pt~~~~~~g~~~~~~~~g~----~~~~~l~~~l~~~~  130 (239)
                      +.|++.      .+|++++++++|+....+.|.    ++.+++.+.|+...
T Consensus       126 ~~ygv~~~~~g~~~p~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~l~  176 (211)
T 2pn8_A          126 KDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQ  176 (211)
T ss_dssp             HHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HHcCCcccCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            778884      589999998777766555442    57888888887654

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=98.87  E-value=3.5e-09  Score=73.64  Aligned_cols=63  Identities=14%  Similarity=0.231  Sum_probs=45.5

Q ss_pred             hhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc-------hhHHHHcCCCCCCeE
Q 026412           31 DNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-------KDLAEKYGVSGFPTL  100 (239)
Q Consensus        31 ~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~-------~~l~~~~~i~~~Pt~  100 (239)
                      +.+++.+.++  .++.|+++|||+|+++.+.+.+....++   ++  ..+|++.+       ..+.+.+++.++|++
T Consensus         3 ~~~~~~i~~~--~v~~f~~~~C~~C~~~~~~L~~~~~~~~---~~--~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i   72 (105)
T 1kte_A            3 AFVNSKIQPG--KVVVFIKPTCPFCRKTQELLSQLPFKEG---LL--EFVDITATSDTNEIQDYLQQLTGARTVPRV   72 (105)
T ss_dssp             HHHHHHCCTT--CEEEEECSSCHHHHHHHHHHHHSCBCTT---SE--EEEEGGGSTTHHHHHHHHHHHHSCCCSCEE
T ss_pred             hHHHhhcccC--CEEEEEcCCCHhHHHHHHHHHHcCCCCC---cc--EEEEccCCCCHHHHHHHHHHHhCCCCcCeE
Confidence            3456666444  3677999999999999999987654432   34  44555543       357888999999997

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=98.85  E-value=1.6e-09  Score=81.15  Aligned_cols=90  Identities=17%  Similarity=0.303  Sum_probs=59.5

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc---------------------chhHHHHcCCC-
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------YKDLAEKYGVS-   95 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~---------------------~~~l~~~~~i~-   95 (239)
                      .+|++++.|| ++||++|....|.+.++.+++.. .++.++.|..|.                     +.++++.||+. 
T Consensus        29 ~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~-~~~~~v~vs~d~~~~~~~~~~~~~~~~p~l~D~~~~v~~~ygv~~  107 (157)
T 4g2e_A           29 KGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQ-VNAVVLGISVDPPFSNKAFKEHNKLNFTILSDYNREVVKKYNVAW  107 (157)
T ss_dssp             TTSCEEEEECSCTTCCC------CCSCGGGGGGG-CSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEE
T ss_pred             CCCeEEEEecCCCCCCccccchhhcccccccccc-cCceEeeecccchhHHHHHHHHcCCcEEEEEcCCcHHHHHcCCcc
Confidence            5789999998 99999999999999988888864 357777776653                     23567777763 


Q ss_pred             ----------CCCeEEEEeCCCcCcccc-----CCCCCHHHHHHHHHHh
Q 026412           96 ----------GFPTLKFFPKGNKDGEEY-----GGGRDLEDFVSFINEK  129 (239)
Q Consensus        96 ----------~~Pt~~~~~~g~~~~~~~-----~g~~~~~~l~~~l~~~  129 (239)
                                ..|+++++++.|+....+     .+..+.+++.+.|+..
T Consensus       108 ~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~L  156 (157)
T 4g2e_A          108 EFPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKSL  156 (157)
T ss_dssp             ECTTSTTCEEECEEEEEECTTSBEEEEEEESSTTCCCCHHHHHHHHHHT
T ss_pred             ccccCCCcceeeeeEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHh
Confidence                      357778887766654333     3445778888887653

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=98.85  E-value=8.2e-09  Score=79.49  Aligned_cols=91  Identities=12%  Similarity=0.004  Sum_probs=68.7

Q ss_pred             CCCcEEEEEEC-CCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-------------------------chhHHHHc
Q 026412           39 QDRGALVEFYA-PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------------------------YKDLAEKY   92 (239)
Q Consensus        39 ~~k~vlV~F~a-~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~   92 (239)
                      .+++++|+||+ +||++|....|.+.++.+++.. .++.++.|.+|.                         ...+++.|
T Consensus        29 ~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~y  107 (186)
T 1n8j_A           29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQK-LGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNF  107 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHH-TTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHT
T ss_pred             CCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHH-CCCEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCchHHHHHh
Confidence            46899999995 9999999999999999988864 357787776652                         12456677


Q ss_pred             CCC------CCCeEEEEeCCCcCccccCCC----CCHHHHHHHHHHhh
Q 026412           93 GVS------GFPTLKFFPKGNKDGEEYGGG----RDLEDFVSFINEKC  130 (239)
Q Consensus        93 ~i~------~~Pt~~~~~~g~~~~~~~~g~----~~~~~l~~~l~~~~  130 (239)
                      ++.      ..|+.++++++|+....+.|.    ++.+++.+.|+...
T Consensus       108 gv~~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~l~~l~  155 (186)
T 1n8j_A          108 DNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ  155 (186)
T ss_dssp             TCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             CCccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            775      269999998777766666553    36888888887654

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=98.84  E-value=9.7e-09  Score=78.55  Aligned_cols=90  Identities=10%  Similarity=0.090  Sum_probs=66.5

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc---------------------chhHHHHcCCCC
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------YKDLAEKYGVSG   96 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~---------------------~~~l~~~~~i~~   96 (239)
                      .+++++|.|| ++||++|....|.+.++.+++... ++.++.|.+|.                     ...+++.|++..
T Consensus        50 ~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~-~~~vv~Vs~D~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~  128 (179)
T 3ixr_A           50 TNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQI-NATVLGVSRDSVKSHDSFCAKQGFTFPLVSDSDAILCKAFDVIK  128 (179)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTT-TEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTCHHHHHTTCEE
T ss_pred             CCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHcCCceEEEECCchHHHHHcCCcc
Confidence            4678999998 999999999999999999998743 57788777653                     235777888753


Q ss_pred             ------------CCeEEEEeCCCcCccccCCC---CCHHHHHHHHHHh
Q 026412           97 ------------FPTLKFFPKGNKDGEEYGGG---RDLEDFVSFINEK  129 (239)
Q Consensus        97 ------------~Pt~~~~~~g~~~~~~~~g~---~~~~~l~~~l~~~  129 (239)
                                  .|+++++++.|+....+.+.   ...+++.+.|++.
T Consensus       129 ~~~~~g~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~il~~l~~l  176 (179)
T 3ixr_A          129 EKTMYGRQVIGIERSTFLIGPTHRIVEAWRQVKVPGHAEEVLNKLKAH  176 (179)
T ss_dssp             EECCC--CEEEECCEEEEECTTSBEEEEECSCCSTTHHHHHHHHHHHH
T ss_pred             cccccCcccCCcceEEEEECCCCEEEEEEcCCCCCCCHHHHHHHHHHH
Confidence                        58888888776765555442   3456666666543

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=98.82  E-value=8e-09  Score=83.20  Aligned_cols=96  Identities=13%  Similarity=0.101  Sum_probs=73.2

Q ss_pred             HHHhcCCCc-EEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc---------------------------c
Q 026412           34 EKEVGQDRG-ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------------Y   85 (239)
Q Consensus        34 ~~~~~~~k~-vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~---------------------------~   85 (239)
                      ...+..+++ +++.||++||++|....|.+.++.++|.. .++.++.|++|.                           .
T Consensus        27 ~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~-~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~  105 (249)
T 3a2v_A           27 DHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQR-LGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQ  105 (249)
T ss_dssp             HHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHH-TTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTT
T ss_pred             HHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHh-CCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCc
Confidence            444435565 56678999999999999999999999864 358888888763                           2


Q ss_pred             hhHHHHcCCC-------CCCeEEEEeCCCcCccccCCC----CCHHHHHHHHHHhh
Q 026412           86 KDLAEKYGVS-------GFPTLKFFPKGNKDGEEYGGG----RDLEDFVSFINEKC  130 (239)
Q Consensus        86 ~~l~~~~~i~-------~~Pt~~~~~~g~~~~~~~~g~----~~~~~l~~~l~~~~  130 (239)
                      ..+++.|++.       .+|++++++++|.....+.|.    ++.+++...|+...
T Consensus       106 ~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~gr~~~Ellr~I~alq  161 (249)
T 3a2v_A          106 GTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALK  161 (249)
T ss_dssp             SHHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             hHHHHHhCCccccCCCcccceEEEECCCCeEEEEEecCCcccchhHHHHHHHHHHH
Confidence            3688899997       899999998776655544333    68999999887653

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=98.82  E-value=4.8e-08  Score=70.19  Aligned_cols=95  Identities=13%  Similarity=0.143  Sum_probs=78.9

Q ss_pred             cEEc-ChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEE
Q 026412           25 VVVL-TEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF  103 (239)
Q Consensus        25 v~~l-~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~  103 (239)
                      +..+ +.+.+++.+...+.++|-|+++||++|   .+.|.++|+.+   +++.|+.++   +++++++|++. .|++++|
T Consensus        23 ~~~i~s~~e~e~fi~~~~v~VVGfF~~~~~~~---~~~F~~~A~~~---~d~~F~~t~---~~~v~~~~~v~-~~~vvlf   92 (124)
T 2l4c_A           23 PTWLTDVPAAMEFIAATEVAVIGFFQDLEIPA---VPILHSMVQKF---PGVSFGIST---DSEVLTHYNIT-GNTICLF   92 (124)
T ss_dssp             CEECCSHHHHHHHHHTSSEEEEEECSCTTSTH---HHHHHHHHHHC---TTSEEEEEC---CHHHHHHTTCC-SSCEEEE
T ss_pred             ceEcCCHHHHHHHHhcCCCEEEEEECCCCChh---HHHHHHHHHhC---CCceEEEEC---hHHHHHHcCCC-CCeEEEE
Confidence            3444 567899999888899999999999998   67899999997   368888764   46799999998 8999999


Q ss_pred             eCCCcCccccCC----CCCHHHHHHHHHHh
Q 026412          104 PKGNKDGEEYGG----GRDLEDFVSFINEK  129 (239)
Q Consensus       104 ~~g~~~~~~~~g----~~~~~~l~~~l~~~  129 (239)
                      ++.......|.|    ..+.++|.+||...
T Consensus        93 kkfde~~~~~~g~~~~~~~~~~L~~FI~~n  122 (124)
T 2l4c_A           93 RLVDNEQLNLEDEDIESIDATKLSRFIEIN  122 (124)
T ss_dssp             ETTTTEEEEECHHHHTTCCHHHHHHHHHHH
T ss_pred             EcCCCCceeecCcccCCCCHHHHHHHHHHh
Confidence            987555677886    78999999999864

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=98.82  E-value=3.6e-08  Score=76.35  Aligned_cols=43  Identities=26%  Similarity=0.533  Sum_probs=36.9

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD   83 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~   83 (239)
                      +.++++|.|+++|||||+++.|.+.++.+.++.  ++.|..++++
T Consensus        23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~--~v~~~~~p~~   65 (193)
T 3hz8_A           23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKD--DMYLRTEHVV   65 (193)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCT--TEEEEEEECC
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCC--CeEEEEecCC
Confidence            457899999999999999999999999988864  5878777664

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=98.80  E-value=2.3e-08  Score=75.09  Aligned_cols=87  Identities=11%  Similarity=0.130  Sum_probs=61.4

Q ss_pred             CCCcEEEEEEC-CCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-----------------------chhHHHHcCC
Q 026412           39 QDRGALVEFYA-PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-----------------------YKDLAEKYGV   94 (239)
Q Consensus        39 ~~k~vlV~F~a-~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-----------------------~~~l~~~~~i   94 (239)
                      .+++++|+||+ +||++|....|.+.++.+++   .++.++.|..|.                       ...+++.|++
T Consensus        41 ~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~---~~v~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv  117 (163)
T 1psq_A           41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGL---DNTVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYAL  117 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC---TTEEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHHHHHTC
T ss_pred             CCCEEEEEEECCCCCCccHHHHHHHHHHHHHc---CCcEEEEEECCCHHHHHHHHHhcCCCCcEEecCCchhHHHHHhCC
Confidence            57899999995 99999999999999998887   357777776542                       1245566666


Q ss_pred             C----C--CCeEEEEeCCCcCccccCC-----CCCHHHHHHHHHH
Q 026412           95 S----G--FPTLKFFPKGNKDGEEYGG-----GRDLEDFVSFINE  128 (239)
Q Consensus        95 ~----~--~Pt~~~~~~g~~~~~~~~g-----~~~~~~l~~~l~~  128 (239)
                      .    +  .|++++++++|+....+.|     ..+.+++.+.|++
T Consensus       118 ~~~~~g~~~p~~~liD~~G~i~~~~~g~~~~~~~~~~~~l~~l~~  162 (163)
T 1psq_A          118 LINEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA  162 (163)
T ss_dssp             BCTTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred             ccccCCceEEEEEEEcCCCeEEEEEecCCcCCCCCHHHHHHHHHh
Confidence            5    3  3788888766665555543     2345666666653

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=98.80  E-value=1.5e-09  Score=82.06  Aligned_cols=98  Identities=15%  Similarity=0.236  Sum_probs=70.5

Q ss_pred             HHHHhcCCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc---------------------chhHHH
Q 026412           33 FEKEVGQDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------YKDLAE   90 (239)
Q Consensus        33 f~~~~~~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~---------------------~~~l~~   90 (239)
                      +.....+++++++.|| ++||++|....|.+.++.+++... ++.++.|..|.                     +.++++
T Consensus        26 Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~-~v~vv~is~d~~~~~~~~~~~~~~~fp~l~D~~~~v~~  104 (164)
T 4gqc_A           26 LYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKA-NAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIK  104 (164)
T ss_dssp             HHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGS-SSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHH
T ss_pred             HHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhcc-CceEEEecCCCHHHHHHHHHhcCcccceeecCchHHHH
Confidence            4455567889999988 999999999999998888888643 57777776653                     236777


Q ss_pred             HcCCC----------CCCeEEEEeCCCcCcccc-----CCCCCHHHHHHHHHHhhC
Q 026412           91 KYGVS----------GFPTLKFFPKGNKDGEEY-----GGGRDLEDFVSFINEKCG  131 (239)
Q Consensus        91 ~~~i~----------~~Pt~~~~~~g~~~~~~~-----~g~~~~~~l~~~l~~~~~  131 (239)
                      .||+.          ..|+++++++.|+....+     .+..+.+++++.+++..+
T Consensus       105 ~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~  160 (164)
T 4gqc_A          105 LYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIAG  160 (164)
T ss_dssp             HTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSCTTCCCCHHHHHHHHHHHHH
T ss_pred             HcCCcccccccCcCCeeeEEEEECCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHhc
Confidence            88873          368888887776654433     233577888888776653

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=98.78  E-value=1.8e-08  Score=76.29  Aligned_cols=42  Identities=14%  Similarity=0.201  Sum_probs=35.9

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD   83 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~   83 (239)
                      .+++++|.|| ++||++|....|.+.++.+++   .++.++.|.+|
T Consensus        46 ~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~---~~v~vv~Is~d   88 (171)
T 2yzh_A           46 KDVVQVIITVPSLDTPVCETETKKFNEIMAGM---EGVDVTVVSMD   88 (171)
T ss_dssp             CSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC---TTEEEEEEESS
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHc---CCceEEEEeCC
Confidence            4789999999 899999999999999998887   36777777655

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=98.77  E-value=6.8e-08  Score=73.66  Aligned_cols=89  Identities=12%  Similarity=0.303  Sum_probs=65.8

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc---------------------------------
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY---------------------------------   85 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~---------------------------------   85 (239)
                      ..++++|.|+...||||++++|.+.++.+.+.....+.+..+....+                                 
T Consensus        20 ~~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~   99 (184)
T 4dvc_A           20 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIALEVEDKMVPVMFNRIHTL   99 (184)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEECSSSSGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTS
T ss_pred             CCCCEEEEEECCCCHhHHHHhHHHHHHHhhcCCceEEEEEecCCCCCchHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999987544444444432111                                 


Q ss_pred             ----------------------------------------hhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHH
Q 026412           86 ----------------------------------------KDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSF  125 (239)
Q Consensus        86 ----------------------------------------~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~  125 (239)
                                                              ...++++||+|+||+++  +| +......|..+.+++.+.
T Consensus       100 ~~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~gv~gTPtfiI--NG-ky~v~~~~~~s~e~~~~~  176 (184)
T 4dvc_A          100 RKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVHRFDKQFQDSGLTGVPAVVV--NN-RYLVQGQSAKSLDEYFDL  176 (184)
T ss_dssp             CCCCSSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHTCCSSSEEEE--TT-TEEECGGGCSSHHHHHHH
T ss_pred             hhccchHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHcCCCcCCEEEE--CC-EEeeCCcCCCCHHHHHHH
Confidence                                                    05677899999999765  55 433444567788999988


Q ss_pred             HHHhh
Q 026412          126 INEKC  130 (239)
Q Consensus       126 l~~~~  130 (239)
                      |+.++
T Consensus       177 i~~Ll  181 (184)
T 4dvc_A          177 VNYLL  181 (184)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            87665

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=98.77  E-value=2.6e-08  Score=79.89  Aligned_cols=90  Identities=13%  Similarity=0.214  Sum_probs=69.9

Q ss_pred             CCCcEEEEEEC-CCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----------------------------chhHH
Q 026412           39 QDRGALVEFYA-PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA   89 (239)
Q Consensus        39 ~~k~vlV~F~a-~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (239)
                      .+++++|.||+ +||++|....|.+.++.+++... ++.++.|.+|.                            ...++
T Consensus        76 ~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~-gv~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~  154 (240)
T 3qpm_A           76 RGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAI-NTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQIS  154 (240)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTT-TEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHH
T ss_pred             CCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHHHhhcCCCCCceeEEeCchHHHH
Confidence            57899999999 99999999999999999999743 57787776652                            12577


Q ss_pred             HHcCCC------CCCeEEEEeCCCcCccccCC----CCCHHHHHHHHHHh
Q 026412           90 EKYGVS------GFPTLKFFPKGNKDGEEYGG----GRDLEDFVSFINEK  129 (239)
Q Consensus        90 ~~~~i~------~~Pt~~~~~~g~~~~~~~~g----~~~~~~l~~~l~~~  129 (239)
                      +.|++.      .+|++++++++|+....+.+    .++.+++.+.|+..
T Consensus       155 ~~ygv~~~~~g~~~p~~flID~~G~I~~~~~~~~~~~~~~~eil~~l~~l  204 (240)
T 3qpm_A          155 KDYGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQAF  204 (240)
T ss_dssp             HHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHhCCccccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            788887      58999999877766544433    46678888887654

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=98.74  E-value=3.7e-08  Score=74.22  Aligned_cols=86  Identities=16%  Similarity=0.191  Sum_probs=61.6

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-----------------------chhHHHHcCC
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-----------------------YKDLAEKYGV   94 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-----------------------~~~l~~~~~i   94 (239)
                      .+++++|.|| +.||++|....|.+.++.++    .++.++.|..|.                       ...+++.|++
T Consensus        45 ~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~----~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv  120 (166)
T 3p7x_A           45 AGKKKLISVVPSIDTGVCDQQTRKFNSDASK----EEGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYGV  120 (166)
T ss_dssp             TTSCEEEEECSCTTSHHHHHHHHHHHHHSCT----TTSEEEEEESSCHHHHHHHHHHHTCSSCEEEECTTTCHHHHHHTC
T ss_pred             CCCcEEEEEECCCCCCccHHHHHHHHHHhhc----CCCEEEEEECCCHHHHHHHHHHcCCCceEEccCCchhHHHHHhCC
Confidence            5788999999 78999999999999888766    357777776542                       2356667777


Q ss_pred             CC------CCeEEEEeCCCcCcccc-----CCCCCHHHHHHHHHH
Q 026412           95 SG------FPTLKFFPKGNKDGEEY-----GGGRDLEDFVSFINE  128 (239)
Q Consensus        95 ~~------~Pt~~~~~~g~~~~~~~-----~g~~~~~~l~~~l~~  128 (239)
                      ..      .|++++++++|+....+     .+..+.+++.+.|++
T Consensus       121 ~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~il~~l~~  165 (166)
T 3p7x_A          121 VMEELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKN  165 (166)
T ss_dssp             EETTTTEECCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHT
T ss_pred             ccccCCceeeEEEEECCCCeEEEEEEcCCcccCCCHHHHHHHHhc
Confidence            64      79988887776655442     234566777777653

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=98.72  E-value=2.9e-07  Score=77.67  Aligned_cols=110  Identities=14%  Similarity=0.122  Sum_probs=88.0

Q ss_pred             CCCcEEcChhhHHHHhcCC--CcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHH----HHcCCC
Q 026412           22 ADDVVVLTEDNFEKEVGQD--RGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLA----EKYGVS   95 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~--k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~----~~~~i~   95 (239)
                      .+.+.+++.+++.+...++  +..++.|+.+||++|..+.+.+.++|+.+..+..+.|+.+|++..+.++    +.||+.
T Consensus       225 ~p~v~elt~~~~~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vA~~~~~~~~~~f~~id~~~~~~~~~~~~~~~gi~  304 (350)
T 1sji_A          225 RPTLRRLRPEDMFETWEDDLNGIHIVAFAERSDPDGYEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVAYWEKTFKID  304 (350)
T ss_dssp             CCSEEECCTTTHHHHHHSCSSSEEEEEECCTTSHHHHHHHHHHHHHHHHGGGCSSCCEEEECGGGCHHHHHHHHHHCCSC
T ss_pred             ccchhhcChhhHHHHhcCCCCCcEEEEEEcCCCccHHHHHHHHHHHHHHhCCCCceEEEEECchhhHHHHHHHHhhcCCC
Confidence            4678899999999887542  4455669999999999999999999999974447999999999888878    789998


Q ss_pred             -CCCeEEEEeCCCcCccc--c---CCCCCHHHHHHHHHHhhC
Q 026412           96 -GFPTLKFFPKGNKDGEE--Y---GGGRDLEDFVSFINEKCG  131 (239)
Q Consensus        96 -~~Pt~~~~~~g~~~~~~--~---~g~~~~~~l~~~l~~~~~  131 (239)
                       ++|++++++........  +   .|..+.+.+.+|+++...
T Consensus       305 ~~~P~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~F~~d~~~  346 (350)
T 1sji_A          305 LFKPQIGVVNVTDADSVWMEIPDDDDLPTAEELEDWIEDVLS  346 (350)
T ss_dssp             TTSCEEEEEESSSSCEEESCSSCCSCCCCHHHHHHHHHHHHT
T ss_pred             ccCCcEEEEecccccccccCCCcccccCCHHHHHHHHHHHhc
Confidence             58999999763221122  2   357899999999998764

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=98.72  E-value=5e-08  Score=83.06  Aligned_cols=104  Identities=13%  Similarity=0.176  Sum_probs=84.3

Q ss_pred             CCCcEEcC-hhhHHHHhc-CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCe
Q 026412           22 ADDVVVLT-EDNFEKEVG-QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT   99 (239)
Q Consensus        22 ~~~v~~l~-~~~f~~~~~-~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt   99 (239)
                      ...+..++ .+++++.+. ..+.++|.|+++||+   ...+.|.++|..+.  +++.|+.++   +..++++|++.. |+
T Consensus       124 ~~~v~~i~~~~~~~~~~~~~~~~~vv~ff~~~~~---~~~~~f~~~A~~~~--~~~~F~~~~---~~~~~~~~~v~~-p~  194 (367)
T 3us3_A          124 EDPVELIEGERELQAFENIEDEIKLIGYFKNKDS---EHYKAFKEAAEEFH--PYIPFFATF---DSKVAKKLTLKL-NE  194 (367)
T ss_dssp             SCSEEECCSHHHHHHHHHCCSSCEEEEECSCTTC---HHHHHHHHHHHHHT--TTSCEEEEC---CHHHHHHHTCCT-TC
T ss_pred             CCCcEEcCCHHHHHHHhccCCCcEEEEEECCCCc---hHHHHHHHHHHhhc--CCcEEEEEC---CHHHHHHcCCCC-Ce
Confidence            45667774 688999986 678999999999976   55778999999985  467788764   457899999985 99


Q ss_pred             EEEEeCCCcCccccCCC-CCHHHHHHHHHHhhCCCC
Q 026412          100 LKFFPKGNKDGEEYGGG-RDLEDFVSFINEKCGTSR  134 (239)
Q Consensus       100 ~~~~~~g~~~~~~~~g~-~~~~~l~~~l~~~~~~~~  134 (239)
                      +++|+++...+..|.|. ++.+.+.+||+...-+..
T Consensus       195 i~lf~~~~~~~~~y~g~~~~~~~l~~fi~~~~~p~v  230 (367)
T 3us3_A          195 IDFYEAFMEEPVTIPDKPNSEEEIVNFVEEHRRSTL  230 (367)
T ss_dssp             EEEECTTCSSCEECSSSSCCHHHHHHHHHHTCSCSE
T ss_pred             EEEEcCCCCCCeecCCCCCCHHHHHHHHHHcCccce
Confidence            99999876677889985 999999999998765543

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=98.70  E-value=4.5e-08  Score=78.33  Aligned_cols=88  Identities=13%  Similarity=0.263  Sum_probs=64.1

Q ss_pred             CCCcEEEEEE-CCCChHHh-hHhHHHHHHHHHccCCCCe-EEEEEeCcc----------------------chhHHHHcC
Q 026412           39 QDRGALVEFY-APWCGHCK-NLAPTYEKVAAAFTLEDDV-VVANLDADK----------------------YKDLAEKYG   93 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~-~~~~~~~~~a~~~~~~~~v-~~~~vd~~~----------------------~~~l~~~~~   93 (239)
                      ++++++|+|| ++||++|. ...|.+.++.+.+... ++ .++.|+.|.                      +..+++.||
T Consensus        32 ~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g  110 (241)
T 1nm3_A           32 DNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKY-GVDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGEFTEGMG  110 (241)
T ss_dssp             TTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHT-TCCEEEEEESSCHHHHHHHHHHTTCTTSEEEECTTSHHHHHTT
T ss_pred             CCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEEcCCHHHHHHHHHhcCCCceEEEECCCcHHHHHhC
Confidence            5689999999 99999999 9999999999888643 57 777776552                      125777888


Q ss_pred             CC-----------CCCeEEEEeCCCcCccccCCC---------CCHHHHHHHHHH
Q 026412           94 VS-----------GFPTLKFFPKGNKDGEEYGGG---------RDLEDFVSFINE  128 (239)
Q Consensus        94 i~-----------~~Pt~~~~~~g~~~~~~~~g~---------~~~~~l~~~l~~  128 (239)
                      +.           ..|+.+++ ++|+....+.|.         .+.+++.+.+..
T Consensus       111 v~~~~~~~g~~~~~~p~t~li-~~G~i~~~~~~~~~~~~~~~~~~~~~il~~l~~  164 (241)
T 1nm3_A          111 MLVGKEDLGFGKRSWRYSMLV-KNGVVEKMFIEPNEPGDPFKVSDADTMLKYLAP  164 (241)
T ss_dssp             CEEECTTTTCCEEECCEEEEE-ETTEEEEEEECCSCSSCCCSSSSHHHHHHHHCT
T ss_pred             ceeecccccCcccceeEEEEE-ECCEEEEEEEeccCCCccceecCHHHHHHHhhh
Confidence            75           34787777 444655444443         467888877764

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=98.69  E-value=4.4e-08  Score=73.74  Aligned_cols=73  Identities=15%  Similarity=0.208  Sum_probs=53.0

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-----------------------chhHHHHcCC
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-----------------------YKDLAEKYGV   94 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-----------------------~~~l~~~~~i   94 (239)
                      .+++++|+|| +.||++|....|.+.++.+++   .++.++.|..|.                       ...+++.|++
T Consensus        42 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~---~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv  118 (165)
T 1q98_A           42 ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL---SNTIVLCISADLPFAQARFCGAEGIENAKTVSTFRNHALHSQLGV  118 (165)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS---TTEEEEEEESSCHHHHTTCTTTTTCTTEEEEECTTCTHHHHHTTC
T ss_pred             CCCeEEEEEECCCCCCccHHHHHHHHHHHHHc---CCCEEEEEeCCCHHHHHHHHHHcCCCceEEeeccccchHHHHhCc
Confidence            5689999999 899999999999999999988   357777766542                       2345666666


Q ss_pred             CC---------CCeEEEEeCCCcCccccC
Q 026412           95 SG---------FPTLKFFPKGNKDGEEYG  114 (239)
Q Consensus        95 ~~---------~Pt~~~~~~g~~~~~~~~  114 (239)
                      ..         .|+.++++++|+....+.
T Consensus       119 ~~~~~~~~g~~~p~~~liD~~G~i~~~~~  147 (165)
T 1q98_A          119 DIQTGPLAGLTSRAVIVLDEQNNVLHSQL  147 (165)
T ss_dssp             EECSSTTTTSBCCEEEEECTTSBEEEEEE
T ss_pred             eecccccCCccceeEEEEcCCCEEEEEEe
Confidence            42         377777766656554443

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=98.67  E-value=7.4e-08  Score=74.09  Aligned_cols=30  Identities=23%  Similarity=0.533  Sum_probs=28.2

Q ss_pred             CCcEEEEEECCCChHHhhHhHHHHHHHHHc
Q 026412           40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAF   69 (239)
Q Consensus        40 ~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~   69 (239)
                      +++++|.|++.|||||+++.|.+.++.+.+
T Consensus        22 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~   51 (185)
T 3feu_A           22 GMAPVTEVFALSCGHCRNMENFLPVISQEA   51 (185)
T ss_dssp             CCCSEEEEECTTCHHHHHHGGGHHHHHHHH
T ss_pred             CCCEEEEEECCCChhHHHhhHHHHHHHHHh
Confidence            689999999999999999999999998876

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=98.67  E-value=4.2e-08  Score=73.69  Aligned_cols=44  Identities=9%  Similarity=0.231  Sum_probs=35.6

Q ss_pred             CCCcEEEEEE-CCCChHHh-hHhHHHHHHHHHccCCCCeE-EEEEeCc
Q 026412           39 QDRGALVEFY-APWCGHCK-NLAPTYEKVAAAFTLEDDVV-VANLDAD   83 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~-~~~~~~~~~a~~~~~~~~v~-~~~vd~~   83 (239)
                      ++++++|.|| ++||++|. ...|.+.++.+++... ++. ++.|..|
T Consensus        34 ~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~-~v~~vv~Is~d   80 (162)
T 1tp9_A           34 AGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSK-GVTEILCISVN   80 (162)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHT-TCCCEEEEESS
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEECC
Confidence            5789999999 89999999 8999999999888633 466 6666544

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=98.67  E-value=2.4e-08  Score=70.62  Aligned_cols=56  Identities=18%  Similarity=0.277  Sum_probs=42.0

Q ss_pred             cEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch-------hHHHHcCCCCCCeEEE
Q 026412           42 GALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-------DLAEKYGVSGFPTLKF  102 (239)
Q Consensus        42 ~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~-------~l~~~~~i~~~Pt~~~  102 (239)
                      ..++.|+++|||+|+++.+.+++.....   ++  +..+|++.++       .+.+.+|+.++|++++
T Consensus        19 ~~vv~f~~~~Cp~C~~~~~~L~~~~~~~---~~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~i   81 (114)
T 2hze_A           19 NKVTIFVKYTCPFCRNALDILNKFSFKR---GA--YEIVDIKEFKPENELRDYFEQITGGKTVPRIFF   81 (114)
T ss_dssp             TCEEEEECTTCHHHHHHHHHHTTSCBCT---TS--EEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEEE
T ss_pred             CCEEEEEeCCChhHHHHHHHHHHcCCCc---Cc--eEEEEccCCCChHHHHHHHHHHhCCCCcCEEEE
Confidence            4577899999999999999887643221   12  6667777553       7888999999998743

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.66  E-value=3.1e-08  Score=71.83  Aligned_cols=62  Identities=15%  Similarity=0.272  Sum_probs=44.0

Q ss_pred             hhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc---h----hHHHHcCCCCCCeEE
Q 026412           30 EDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY---K----DLAEKYGVSGFPTLK  101 (239)
Q Consensus        30 ~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~---~----~l~~~~~i~~~Pt~~  101 (239)
                      .+.+.+.+... . ++.|+++||++|+++.+.+.++.        +.+..+|++..   +    .+.+.+++.++|+++
T Consensus        17 ~~~~~~~i~~~-~-vvvf~~~~Cp~C~~~~~~L~~~~--------i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l~   85 (130)
T 2cq9_A           17 VNQIQETISDN-C-VVIFSKTSCSYCTMAKKLFHDMN--------VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIF   85 (130)
T ss_dssp             HHHHHHHHHHS-S-EEEEECSSCSHHHHHHHHHHHHT--------CCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEEE
T ss_pred             HHHHHHHHcCC-c-EEEEEcCCChHHHHHHHHHHHcC--------CCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEEE
Confidence            45566666544 3 34499999999999999998763        22344555533   3    378899999999984

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=98.65  E-value=7.8e-08  Score=74.19  Aligned_cols=42  Identities=19%  Similarity=0.434  Sum_probs=33.3

Q ss_pred             CCcEEEEEECCCChHHhhHhHHH---HHHHHHccCCCCeEEEEEeCc
Q 026412           40 DRGALVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDAD   83 (239)
Q Consensus        40 ~k~vlV~F~a~wC~~C~~~~~~~---~~~a~~~~~~~~v~~~~vd~~   83 (239)
                      .++++|.|+++|||||+++.|.+   .++.+.++.  ++.+..++..
T Consensus        14 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~   58 (189)
T 3l9v_A           14 DAPAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQ--GSRMVKYHVS   58 (189)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCT--TCCEEEEECS
T ss_pred             CCCEEEEEECCCChhHHHHhHhccchHHHHHhCCC--CCEEEEEech
Confidence            47899999999999999999987   678777763  4666665543

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=98.64  E-value=5.5e-08  Score=78.60  Aligned_cols=89  Identities=13%  Similarity=0.207  Sum_probs=67.9

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----------------------------chhHH
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA   89 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (239)
                      .+++++|+|| +.||++|....|.+.++.++|... ++.++.|.+|.                            ...++
T Consensus        90 kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~-gv~vv~IS~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~va  168 (254)
T 3tjj_A           90 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSI-NTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQIS  168 (254)
T ss_dssp             TTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHTSCGGGTSCCSCSSCEEECTTSHHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHc-CCEEEEEcCCCHHHHHHHHHHHHHhcCCcccccceeeCcHHHHH
Confidence            5789999999 999999999999999999999743 57787776652                            12577


Q ss_pred             HHcCCC------CCCeEEEEeCCCcCccccCC----CCCHHHHHHHHHH
Q 026412           90 EKYGVS------GFPTLKFFPKGNKDGEEYGG----GRDLEDFVSFINE  128 (239)
Q Consensus        90 ~~~~i~------~~Pt~~~~~~g~~~~~~~~g----~~~~~~l~~~l~~  128 (239)
                      +.|++.      .+|++++++++|+....+.+    .++.+++.+.|..
T Consensus       169 ~~ygv~~~~~g~~~p~tflID~~G~I~~~~~~~~~~~~~~~eil~~L~a  217 (254)
T 3tjj_A          169 KDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQA  217 (254)
T ss_dssp             HHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             HHcCCccccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHh
Confidence            788875      47999999877765544433    4667787777754

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=98.63  E-value=7.2e-08  Score=65.22  Aligned_cols=72  Identities=18%  Similarity=0.215  Sum_probs=50.7

Q ss_pred             EEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc---cc----hhHHHHcCCCCCCeEEEEeCCCcCccccCC
Q 026412           43 ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD---KY----KDLAEKYGVSGFPTLKFFPKGNKDGEEYGG  115 (239)
Q Consensus        43 vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~---~~----~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g  115 (239)
                      -++.|+++||++|++..+.+++..-      .+....|+..   +.    .++.+.+++.++|++++  +| .    ..|
T Consensus        13 ~v~ly~~~~Cp~C~~~~~~L~~~gi------~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~--~g-~----~i~   79 (92)
T 3ic4_A           13 EVLMYGLSTCPHCKRTLEFLKREGV------DFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVK--GD-K----HVL   79 (92)
T ss_dssp             SSEEEECTTCHHHHHHHHHHHHHTC------CCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE--TT-E----EEE
T ss_pred             eEEEEECCCChHHHHHHHHHHHcCC------CcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEE--CC-E----EEe
Confidence            3677999999999999988887632      2334444321   23    56778899999999866  44 2    234


Q ss_pred             CCCHHHHHHHHH
Q 026412          116 GRDLEDFVSFIN  127 (239)
Q Consensus       116 ~~~~~~l~~~l~  127 (239)
                      +.+.+.+.++|+
T Consensus        80 G~~~~~l~~~l~   91 (92)
T 3ic4_A           80 GYNEEKLKELIR   91 (92)
T ss_dssp             SCCHHHHHHHHH
T ss_pred             CCCHHHHHHHhc
Confidence            458999999875

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=98.62  E-value=6.9e-08  Score=71.39  Aligned_cols=62  Identities=15%  Similarity=0.263  Sum_probs=44.3

Q ss_pred             hhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc---h----hHHHHcCCCCCCeEE
Q 026412           30 EDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY---K----DLAEKYGVSGFPTLK  101 (239)
Q Consensus        30 ~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~---~----~l~~~~~i~~~Pt~~  101 (239)
                      ...+++.+... .+ +.|+++|||+|+++.+.+.++.        +.+..+|++..   +    .+++.+++.++|+++
T Consensus        39 ~~~~~~~i~~~-~V-vvf~~~~Cp~C~~~k~~L~~~~--------i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~if  107 (146)
T 2ht9_A           39 VNQIQETISDN-CV-VIFSKTSCSYCTMAKKLFHDMN--------VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIF  107 (146)
T ss_dssp             HHHHHHHHHHC-SE-EEEECTTCHHHHHHHHHHHHHT--------CCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEEE
T ss_pred             HHHHHHHhcCC-CE-EEEECCCChhHHHHHHHHHHcC--------CCeEEEECccCcCCHHHHHHHHHHhCCCCcCeEE
Confidence            45677777544 33 4499999999999999998763        22344555433   3    378899999999984

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=98.61  E-value=9.9e-08  Score=64.77  Aligned_cols=77  Identities=22%  Similarity=0.435  Sum_probs=55.2

Q ss_pred             cEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHc-----CCCCCCeEEEEeCCCcCccccCCC
Q 026412           42 GALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKY-----GVSGFPTLKFFPKGNKDGEEYGGG  116 (239)
Q Consensus        42 ~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~-----~i~~~Pt~~~~~~g~~~~~~~~g~  116 (239)
                      .-++.|+.+|||+|++....+.+.        ++.+..+|++.+++..+.+     |.+.+|++++ .+| ..   . +.
T Consensus         4 a~I~vYs~~~Cp~C~~aK~~L~~~--------gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i-~Dg-~~---l-~~   69 (92)
T 2lqo_A            4 AALTIYTTSWCGYCLRLKTALTAN--------RIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKF-ADG-ST---L-TN   69 (92)
T ss_dssp             SCEEEEECTTCSSHHHHHHHHHHT--------TCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEE-TTS-CE---E-ES
T ss_pred             CcEEEEcCCCCHhHHHHHHHHHhc--------CCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEE-eCC-EE---E-eC
Confidence            357889999999999998776542        4667788888776544433     6788999754 333 22   2 23


Q ss_pred             CCHHHHHHHHHHhhCC
Q 026412          117 RDLEDFVSFINEKCGT  132 (239)
Q Consensus       117 ~~~~~l~~~l~~~~~~  132 (239)
                      .+.+++.++|.+..|-
T Consensus        70 ~~~~el~~~L~el~gL   85 (92)
T 2lqo_A           70 PSADEVKAKLVKIAGL   85 (92)
T ss_dssp             CCHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHhcCC
Confidence            5889999999988763

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=98.61  E-value=3.6e-08  Score=70.20  Aligned_cols=67  Identities=18%  Similarity=0.355  Sum_probs=47.5

Q ss_pred             hhHHHHhcCCCcEEEEEECCCChHHhhH-hHHHHHHHHHccCCCCeEEEEEeCccch-------hHHHHcCCCCCCeEEE
Q 026412           31 DNFEKEVGQDRGALVEFYAPWCGHCKNL-APTYEKVAAAFTLEDDVVVANLDADKYK-------DLAEKYGVSGFPTLKF  102 (239)
Q Consensus        31 ~~f~~~~~~~k~vlV~F~a~wC~~C~~~-~~~~~~~a~~~~~~~~v~~~~vd~~~~~-------~l~~~~~i~~~Pt~~~  102 (239)
                      +.+++.+...  .++.|+++|||+|++. .+.+.+...     ..+.+..+|++.++       .+.+.+++.++|++  
T Consensus        16 ~~~~~~i~~~--~Vvvf~~~~Cp~C~~alk~~L~~~~~-----~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~v--   86 (118)
T 3c1r_A           16 KHVKDLIAEN--EIFVASKTYCPYCHAALNTLFEKLKV-----PRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNI--   86 (118)
T ss_dssp             HHHHHHHHHS--SEEEEECSSCHHHHHHHHHHHTTSCC-----CGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--
T ss_pred             HHHHHHHccC--cEEEEEcCCCcCHHHHHHHHHHHcCC-----CCCCeEEEECccCCChHHHHHHHHHHhCCCCcCEE--
Confidence            4556666433  3666999999999999 877765431     23667778877543       58889999999987  


Q ss_pred             EeCC
Q 026412          103 FPKG  106 (239)
Q Consensus       103 ~~~g  106 (239)
                      |.+|
T Consensus        87 fi~g   90 (118)
T 3c1r_A           87 YING   90 (118)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            4455

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=98.60  E-value=2.4e-07  Score=70.26  Aligned_cols=42  Identities=17%  Similarity=0.180  Sum_probs=32.4

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEE
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL   80 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~v   80 (239)
                      ..+..++.|+.+|||+|+.+.|.+.++.+.+...+++.+...
T Consensus        26 ~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~   67 (175)
T 1z6m_A           26 NAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIK   67 (175)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCCcEEEEEE
Confidence            356789999999999999999999998888722234555543

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=98.59  E-value=2.1e-08  Score=78.05  Aligned_cols=54  Identities=13%  Similarity=0.354  Sum_probs=43.5

Q ss_pred             hhhHHHHh--cCCCcEEEEEECCCChHHhhHhHHH---HHHHHHccCCCCeEEEEEeCccc
Q 026412           30 EDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDADKY   85 (239)
Q Consensus        30 ~~~f~~~~--~~~k~vlV~F~a~wC~~C~~~~~~~---~~~a~~~~~~~~v~~~~vd~~~~   85 (239)
                      +.+|..+.  ...++++|.||++|||||+.+.|.+   +++++.++  +++.|.+++++.+
T Consensus       101 g~~y~~l~~p~~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~--~~v~~~~~~v~~~  159 (197)
T 1un2_A          101 GKQYTTLEKPVAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLP--EGVKMTKYHVNFM  159 (197)
T ss_dssp             TTTEEECSSCCTTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSC--TTCCEEEEECSSS
T ss_pred             CCCceEccCCCCCCCEEEEEECCCChhHHHhCcccccHHHHHHHCC--CCCEEEEeccCcC
Confidence            44555443  3467899999999999999999999   99998886  4688999988754

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=98.58  E-value=1.7e-07  Score=65.12  Aligned_cols=64  Identities=17%  Similarity=0.351  Sum_probs=46.1

Q ss_pred             hhHHHHhcCCCcEEEEEEC-----CCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchh----HHHHcCCCCCCeEE
Q 026412           31 DNFEKEVGQDRGALVEFYA-----PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD----LAEKYGVSGFPTLK  101 (239)
Q Consensus        31 ~~f~~~~~~~k~vlV~F~a-----~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~~  101 (239)
                      +.+++++..+ .++| |++     +|||+|++..+.+.+..        +.+..+|++.++.    +...+|+.++|++ 
T Consensus         8 ~~~~~~i~~~-~vvv-f~~g~~~~~~C~~C~~~~~~L~~~~--------i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v-   76 (105)
T 2yan_A            8 ERLKVLTNKA-SVML-FMKGNKQEAKCGFSKQILEILNSTG--------VEYETFDILEDEEVRQGLKAYSNWPTYPQL-   76 (105)
T ss_dssp             HHHHHHHTSS-SEEE-EESBCSSSBCTTHHHHHHHHHHHHT--------CCCEEEEGGGCHHHHHHHHHHHTCCSSCEE-
T ss_pred             HHHHHHhccC-CEEE-EEecCCCCCCCccHHHHHHHHHHCC--------CCeEEEECCCCHHHHHHHHHHHCCCCCCeE-
Confidence            4566677554 3444 777     99999999999987652        4567788876655    5566899999997 


Q ss_pred             EEeCC
Q 026412          102 FFPKG  106 (239)
Q Consensus       102 ~~~~g  106 (239)
                       |.+|
T Consensus        77 -~i~g   80 (105)
T 2yan_A           77 -YVKG   80 (105)
T ss_dssp             -EETT
T ss_pred             -EECC
Confidence             3354

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=98.57  E-value=2.3e-07  Score=70.27  Aligned_cols=57  Identities=16%  Similarity=0.201  Sum_probs=41.0

Q ss_pred             EcChhhHHHHhcCCCcEEEEEECCCCh-HHhhHhHHHHHHHHHccCC-CCeEEEEEeCc
Q 026412           27 VLTEDNFEKEVGQDRGALVEFYAPWCG-HCKNLAPTYEKVAAAFTLE-DDVVVANLDAD   83 (239)
Q Consensus        27 ~l~~~~f~~~~~~~k~vlV~F~a~wC~-~C~~~~~~~~~~a~~~~~~-~~v~~~~vd~~   83 (239)
                      ..+++.+.-.--++|+++|.||.+||+ .|....+.+.++.+.+..+ .++.++.|.+|
T Consensus        19 d~~G~~v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvD   77 (170)
T 4hde_A           19 NQDGKPFGTKDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVD   77 (170)
T ss_dssp             CTTSCEEEHHHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             CCCCCEEeHHHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecC
Confidence            344444332223689999999999996 7999999998888777533 35777777665

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=98.55  E-value=3.4e-07  Score=71.22  Aligned_cols=72  Identities=14%  Similarity=0.258  Sum_probs=54.2

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-----------------------chhHHHHcCC
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-----------------------YKDLAEKYGV   94 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-----------------------~~~l~~~~~i   94 (239)
                      .+++++|.|| +.||++|....|.+.++.+++   .++.++.|.+|.                       ...+++.|++
T Consensus        77 ~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~---~~v~vv~Is~D~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~ygv  153 (200)
T 3zrd_A           77 AGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL---ENTVVLCISSDLPFAQSRFCGAEGLSNVITLSTLRGADFKQAYGV  153 (200)
T ss_dssp             TTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS---TTEEEEEEESSCHHHHTTCTTTTTCTTEEEEETTSCTHHHHHTTC
T ss_pred             CCCcEEEEEECCCCCchhHHHHHHHHHHHHHh---CCCEEEEEECCCHHHHHHHHHHcCCCCceEEecCchHHHHHHhCc
Confidence            5789999999 789999999999999999998   357777776542                       2345666776


Q ss_pred             C---------CCCeEEEEeCCCcCcccc
Q 026412           95 S---------GFPTLKFFPKGNKDGEEY  113 (239)
Q Consensus        95 ~---------~~Pt~~~~~~g~~~~~~~  113 (239)
                      .         ..|++++++++|+....+
T Consensus       154 ~~~~~~~~g~~~p~~~lID~~G~I~~~~  181 (200)
T 3zrd_A          154 AITEGPLAGLTARAVVVLDGQDNVIYSE  181 (200)
T ss_dssp             EECSSTTTTSBCCEEEEECTTSBEEEEE
T ss_pred             eeecccCCCccccEEEEECCCCeEEEEE
Confidence            4         258888887766654443

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=98.54  E-value=6.4e-07  Score=70.95  Aligned_cols=88  Identities=18%  Similarity=0.202  Sum_probs=65.6

Q ss_pred             cEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-------------------------------chhHHH
Q 026412           42 GALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------------------------------YKDLAE   90 (239)
Q Consensus        42 ~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-------------------------------~~~l~~   90 (239)
                      .+++.||++||++|....+.+.++.+++.. .++.++.|.+|.                               ..++++
T Consensus        34 vvL~~~~a~~cp~C~~el~~l~~l~~~f~~-~~v~vi~IS~D~~~~~~~~~~~i~~~~~~~~~~~~~fpil~D~~~~va~  112 (224)
T 1prx_A           34 GILFSHPRDFTPVCTTELGRAAKLAPEFAK-RNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAI  112 (224)
T ss_dssp             EEEEEESCSSCHHHHHHHHHHHHHHHHHHT-TTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCHHHH
T ss_pred             EEEEEECCCCCCCcHHHHHHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHHHHhhCcccccCcCcceeecCchHHHH
Confidence            566667899999999999999999999874 357777776652                               124667


Q ss_pred             HcCCC------------CCCeEEEEeCCCcCccccCC----CCCHHHHHHHHHHhh
Q 026412           91 KYGVS------------GFPTLKFFPKGNKDGEEYGG----GRDLEDFVSFINEKC  130 (239)
Q Consensus        91 ~~~i~------------~~Pt~~~~~~g~~~~~~~~g----~~~~~~l~~~l~~~~  130 (239)
                      .|++.            .+|++++++++|+....+.|    .++.+++.+.|+...
T Consensus       113 ~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eil~~i~~l~  168 (224)
T 1prx_A          113 LLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQ  168 (224)
T ss_dssp             HTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHHH
T ss_pred             HhCCCCcccccCCCccccceEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            78773            37999999877766555433    468899988887653

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=98.54  E-value=1.3e-07  Score=71.54  Aligned_cols=44  Identities=16%  Similarity=0.216  Sum_probs=36.0

Q ss_pred             CCCcEEEEEE-CCCChHHhh-HhHHHHHHHHHccCCCCe-EEEEEeCc
Q 026412           39 QDRGALVEFY-APWCGHCKN-LAPTYEKVAAAFTLEDDV-VVANLDAD   83 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~-~~~~~~~~a~~~~~~~~v-~~~~vd~~   83 (239)
                      ++++++|.|| ++||++|+. ..|.+.++.+++.. .++ .++.|..+
T Consensus        30 ~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~-~gv~~vv~Is~d   76 (167)
T 2wfc_A           30 AGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHG-KGVDIIACMAVN   76 (167)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHH-TTCCEEEEEESS
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCEEEEEeCC
Confidence            5678888886 999999999 99999999988864 357 77777765

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=98.54  E-value=2.4e-07  Score=71.49  Aligned_cols=41  Identities=22%  Similarity=0.505  Sum_probs=33.8

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEe
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD   81 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd   81 (239)
                      ..+++++.||.+|||+|+.+.|.+.++.+.++.  ++.+..+.
T Consensus        21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~p   61 (195)
T 2znm_A           21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPS--DAYLRTEH   61 (195)
T ss_dssp             SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCT--TEEEEEEE
T ss_pred             CCCcEEEEEECCCChhHHHHhHHHHHHHHHCCC--ceEEEEec
Confidence            467899999999999999999999999998753  46555444

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=98.53  E-value=3.1e-07  Score=63.60  Aligned_cols=75  Identities=16%  Similarity=0.200  Sum_probs=49.4

Q ss_pred             CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc---chhHH----HHcCCCCCCeEEEEeCCCcCccc
Q 026412           40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---YKDLA----EKYGVSGFPTLKFFPKGNKDGEE  112 (239)
Q Consensus        40 ~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~---~~~l~----~~~~i~~~Pt~~~~~~g~~~~~~  112 (239)
                      ++.-++.|+++|||+|++..+.+.+...      .+....||.++   ..++.    +.++..++|++++  +|+    .
T Consensus        20 ~~~~v~ly~~~~Cp~C~~ak~~L~~~~i------~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i--~~~----~   87 (103)
T 3nzn_A           20 DRGKVIMYGLSTCVWCKKTKKLLTDLGV------DFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTII--NDE----K   87 (103)
T ss_dssp             CCSCEEEEECSSCHHHHHHHHHHHHHTB------CEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEE--TTT----E
T ss_pred             CCCeEEEEcCCCCchHHHHHHHHHHcCC------CcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEE--CCC----E
Confidence            4456788999999999999999886532      23333444321   12332    3468999999865  332    3


Q ss_pred             cCCCCCHHHHHHHH
Q 026412          113 YGGGRDLEDFVSFI  126 (239)
Q Consensus       113 ~~g~~~~~~l~~~l  126 (239)
                      +.|+.+.+++.++|
T Consensus        88 ~igg~~~~~l~~~L  101 (103)
T 3nzn_A           88 AIVGFKEKEIRESL  101 (103)
T ss_dssp             EEESCCHHHHHHHT
T ss_pred             EEEcCCHHHHHHHh
Confidence            45677888888775

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=98.52  E-value=2.5e-07  Score=68.39  Aligned_cols=82  Identities=29%  Similarity=0.542  Sum_probs=60.9

Q ss_pred             cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEe--C---------------------------------
Q 026412           38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD--A---------------------------------   82 (239)
Q Consensus        38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd--~---------------------------------   82 (239)
                      ...+.+++.|+.++||+|+++.+.+.++       +++.+...+  .                                 
T Consensus        12 ~~a~~~vv~f~D~~Cp~C~~~~~~l~~l-------~~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~   84 (147)
T 3gv1_A           12 GNGKLKVAVFSDPDCPFCKRLEHEFEKM-------TDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKF   84 (147)
T ss_dssp             TTCCEEEEEEECTTCHHHHHHHHHHTTC-------CSEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCC
T ss_pred             CCCCEEEEEEECCCChhHHHHHHHHhhc-------CceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence            3567899999999999999999987654       234333221  1                                 


Q ss_pred             -----------ccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412           83 -----------DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus        83 -----------~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                                 +++..+++++||+++||+++ .+| .   .+.|..+.+.|.++|++...
T Consensus        85 ~~~~~~~~~~v~~~~~la~~~gI~gtPt~vi-~nG-~---~i~G~~~~~~l~~~i~~~~~  139 (147)
T 3gv1_A           85 PVGGSICDNPVAETTSLGEQFGFNGTPTLVF-PNG-R---TQSGYSPMPQLEEIIRKNQQ  139 (147)
T ss_dssp             CTTCCCCSCSHHHHHHHHHHTTCCSSCEEEC-TTS-C---EEESCCCTTHHHHHHHHTSC
T ss_pred             CCccHHHHHHHHHHHHHHHHhCCCccCEEEE-ECC-E---EeeCCCCHHHHHHHHHHHHH
Confidence                       12347888999999999977 444 2   46799999999999987653

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=98.51  E-value=3.1e-07  Score=63.24  Aligned_cols=58  Identities=14%  Similarity=0.214  Sum_probs=42.9

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHc-----CCCCCCeEEEEeCC
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKY-----GVSGFPTLKFFPKG  106 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~-----~i~~~Pt~~~~~~g  106 (239)
                      ++..-++.|+++|||+|++..+.+++.        ++.+..+|++.+++..+.+     +..++|++  |.+|
T Consensus        13 ~~~~~v~vy~~~~Cp~C~~ak~~L~~~--------~i~y~~idI~~~~~~~~~l~~~~~g~~~vP~i--fi~g   75 (99)
T 3qmx_A           13 AVSAKIEIYTWSTCPFCMRALALLKRK--------GVEFQEYCIDGDNEAREAMAARANGKRSLPQI--FIDD   75 (99)
T ss_dssp             CCCCCEEEEECTTCHHHHHHHHHHHHH--------TCCCEEEECTTCHHHHHHHHHHTTTCCCSCEE--EETT
T ss_pred             cCCCCEEEEEcCCChhHHHHHHHHHHC--------CCCCEEEEcCCCHHHHHHHHHHhCCCCCCCEE--EECC
Confidence            455678889999999999999988865        2446677777665544433     89999987  3454

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=98.50  E-value=1.7e-07  Score=63.02  Aligned_cols=51  Identities=22%  Similarity=0.465  Sum_probs=41.5

Q ss_pred             EEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc--cchhHHHHc-CCCCCCeEE
Q 026412           43 ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD--KYKDLAEKY-GVSGFPTLK  101 (239)
Q Consensus        43 vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~--~~~~l~~~~-~i~~~Pt~~  101 (239)
                      .++.|+++||++|++..+.+++..        +.+..+|++  ...++.+.+ ++.++|+++
T Consensus         7 ~v~~y~~~~C~~C~~~~~~L~~~~--------i~~~~vdv~~~~~~~l~~~~~~~~~vP~l~   60 (89)
T 2klx_A            7 EIILYTRPNCPYCKRARDLLDKKG--------VKYTDIDASTSLRQEMVQRANGRNTFPQIF   60 (89)
T ss_dssp             CEEEESCSCCTTTHHHHHHHHHHT--------CCEEEECSCHHHHHHHHHHHHSSCCSCEEE
T ss_pred             eEEEEECCCChhHHHHHHHHHHcC--------CCcEEEECCHHHHHHHHHHhCCCCCcCEEE
Confidence            477899999999999999888642        446677777  556788889 999999974

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=98.48  E-value=3.8e-07  Score=70.07  Aligned_cols=44  Identities=16%  Similarity=0.234  Sum_probs=33.9

Q ss_pred             CCCc-EEEEEECCCChHHhh-HhHHHHHHHHHccCCCCeE-EEEEeCc
Q 026412           39 QDRG-ALVEFYAPWCGHCKN-LAPTYEKVAAAFTLEDDVV-VANLDAD   83 (239)
Q Consensus        39 ~~k~-vlV~F~a~wC~~C~~-~~~~~~~~a~~~~~~~~v~-~~~vd~~   83 (239)
                      ++++ +++.||++||++|+. ..|.+.+++++++.. ++. ++.|+.+
T Consensus        55 ~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~-gv~~vv~Is~d  101 (184)
T 3uma_A           55 KGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILAR-GVDDIAVVAVN  101 (184)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTT-TCCEEEEEESS
T ss_pred             CCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHc-CCCEEEEEECC
Confidence            3454 556667999999999 799999999998744 466 7777665

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=98.44  E-value=3.5e-07  Score=64.38  Aligned_cols=64  Identities=20%  Similarity=0.466  Sum_probs=42.5

Q ss_pred             hhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----ch----hHHHHcCCCCCCeEEE
Q 026412           31 DNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----YK----DLAEKYGVSGFPTLKF  102 (239)
Q Consensus        31 ~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----~~----~l~~~~~i~~~Pt~~~  102 (239)
                      +.+++.+..++  ++.|+++|||+|++..+.+.+..        +.+..+|++.    .+    .+.+.+|..++|++  
T Consensus        10 ~~~~~~i~~~~--v~vy~~~~Cp~C~~~~~~L~~~~--------i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~i--   77 (113)
T 3rhb_A           10 ESIRKTVTENT--VVIYSKTWCSYCTEVKTLFKRLG--------VQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNV--   77 (113)
T ss_dssp             HHHHHHHHHSS--EEEEECTTCHHHHHHHHHHHHTT--------CCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEE--
T ss_pred             HHHHHHHhcCC--EEEEECCCChhHHHHHHHHHHcC--------CCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEE--
Confidence            34455554444  67799999999999999887642        2234455543    22    25556799999998  


Q ss_pred             EeCC
Q 026412          103 FPKG  106 (239)
Q Consensus       103 ~~~g  106 (239)
                      |.+|
T Consensus        78 fi~g   81 (113)
T 3rhb_A           78 FVCG   81 (113)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            4455

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=98.44  E-value=2.9e-06  Score=68.26  Aligned_cols=106  Identities=19%  Similarity=0.271  Sum_probs=82.2

Q ss_pred             CCCcEEc-ChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeE
Q 026412           22 ADDVVVL-TEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTL  100 (239)
Q Consensus        22 ~~~v~~l-~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  100 (239)
                      ...+..+ +.+.+++.+..++.++|-|+++||.   ...+.|.++|..+.  +++.|+.+   .+.+++++|++.+ |++
T Consensus         5 gP~v~~l~s~~~~~~~l~~~~v~vvgff~~~~~---~~~~~f~~~A~~lr--~~~~F~~~---~~~~v~~~~~~~~-p~i   75 (252)
T 2h8l_A            5 SPASVPLRTEEEFKKFISDKDASIVGFFDDSFS---EAHSEFLKAASNLR--DNYRFAHT---NVESLVNEYDDNG-EGI   75 (252)
T ss_dssp             -CCEEECCSHHHHHHHHTSSSCEEEEEESCTTS---HHHHHHHHHHHHTT--TTSCEEEE---CCHHHHHHHCSSS-EEE
T ss_pred             CCCceeecCHHHHHHHhhcCCeEEEEEECCCCC---hHHHHHHHHHHhcc--cCcEEEEE---ChHHHHHHhCCCC-CcE
Confidence            3457777 4677888888888899999999854   66788999999985  46777776   3467999999997 999


Q ss_pred             EEEeCC------CcCcccc-CCCCCHHHHHHHHHHhhCCCCCC
Q 026412          101 KFFPKG------NKDGEEY-GGGRDLEDFVSFINEKCGTSRDG  136 (239)
Q Consensus       101 ~~~~~g------~~~~~~~-~g~~~~~~l~~~l~~~~~~~~~~  136 (239)
                      ++|+++      ......| .|..+.++|.+||....-+-...
T Consensus        76 ~~fk~~~~~~kf~e~~~~y~~g~~~~~~l~~fi~~~~~Plv~e  118 (252)
T 2h8l_A           76 ILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPH  118 (252)
T ss_dssp             EEECCGGGCCTTSCSEEECCCSSCCHHHHHHHHHHHSSCSSCE
T ss_pred             EEEcchhhcccccccccccCCCCcCHHHHHHHHHhcccCCeee
Confidence            999863      1345678 89899999999999987554433

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=98.43  E-value=5.1e-07  Score=71.32  Aligned_cols=88  Identities=14%  Similarity=0.177  Sum_probs=65.5

Q ss_pred             cEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----------------------------chhHHHHcC
Q 026412           42 GALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLAEKYG   93 (239)
Q Consensus        42 ~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----------------------------~~~l~~~~~   93 (239)
                      .+++.||++||+.|....+.+.++.+++.. .++.++.|.+|.                            ...+++.|+
T Consensus        34 vvL~f~~a~~cp~C~~el~~l~~l~~~f~~-~~v~vi~vS~D~~~~~~~~~~~i~~~~~~~~~~fpil~D~~~~va~~yg  112 (220)
T 1xcc_A           34 AILFSHPNDFTPVCTTELAELGKMHEDFLK-LNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLK  112 (220)
T ss_dssp             EEEECCSCTTCHHHHHHHHHHHHTHHHHHT-TTEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHT
T ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCCHHHHHHHHHHHHHHhcCCCCcceeEECchhHHHHHhC
Confidence            455556899999999999999999999874 358788777652                            125677888


Q ss_pred             CC------------CCCeEEEEeCCCcCccccC----CCCCHHHHHHHHHHhh
Q 026412           94 VS------------GFPTLKFFPKGNKDGEEYG----GGRDLEDFVSFINEKC  130 (239)
Q Consensus        94 i~------------~~Pt~~~~~~g~~~~~~~~----g~~~~~~l~~~l~~~~  130 (239)
                      +.            ..|++++++++|+....+.    ..++.+++.+.|+...
T Consensus       113 v~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~~~~~~g~~~~ell~~i~~lq  165 (220)
T 1xcc_A          113 IMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSLQ  165 (220)
T ss_dssp             CEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             CCCcccccCCCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            73            3789999987776554443    3478999998887653

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=98.42  E-value=1.7e-06  Score=66.53  Aligned_cols=41  Identities=20%  Similarity=0.319  Sum_probs=33.2

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEe
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD   81 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd   81 (239)
                      ..+..++.|+.+|||+|..+.|.+.++.+.++.  ++.+..+.
T Consensus        24 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~--~v~~~~~p   64 (193)
T 2rem_A           24 AGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAK--DVRFTLVP   64 (193)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTSCT--TEEEEEEE
T ss_pred             CCCeEEEEEECCCChhHhhhhHHHHHHHHhcCC--ceEEEEeC
Confidence            356689999999999999999999999988753  56665443

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=98.40  E-value=2.6e-07  Score=70.04  Aligned_cols=65  Identities=15%  Similarity=0.269  Sum_probs=46.4

Q ss_pred             HHHHhcCCCcEEEEEECCCChHHhhH-hHHHHHHHHHccCCCCeE-EEEEeCcc---chhHHHHcCCC-CCC
Q 026412           33 FEKEVGQDRGALVEFYAPWCGHCKNL-APTYEKVAAAFTLEDDVV-VANLDADK---YKDLAEKYGVS-GFP   98 (239)
Q Consensus        33 f~~~~~~~k~vlV~F~a~wC~~C~~~-~~~~~~~a~~~~~~~~v~-~~~vd~~~---~~~l~~~~~i~-~~P   98 (239)
                      +.......+.++++||++||++|+.. .|.+.++.+++... ++. ++.|+.++   ....++++++. .||
T Consensus        37 l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~-g~~~vv~Is~d~~~~~~~~~~~~~~~~~fp  107 (171)
T 2pwj_A           37 VNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAK-GVDSVICVAINDPYTVNAWAEKIQAKDAIE  107 (171)
T ss_dssp             HHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHT-TCSEEEEEESSCHHHHHHHHHHTTCTTTSE
T ss_pred             HHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEeCCCHHHHHHHHHHhCCCCceE
Confidence            33333333577888999999999998 99999999888643 566 77787763   34456667763 566

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=98.38  E-value=6e-07  Score=59.93  Aligned_cols=75  Identities=12%  Similarity=0.075  Sum_probs=52.0

Q ss_pred             cEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc----hhHHHHcCC-----CCCCeEEEEeCCCcCccc
Q 026412           42 GALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY----KDLAEKYGV-----SGFPTLKFFPKGNKDGEE  112 (239)
Q Consensus        42 ~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~----~~l~~~~~i-----~~~Pt~~~~~~g~~~~~~  112 (239)
                      ..++.|+++|||+|++..+.+.+..      -.+.+..+|.+.+    .++.+.+|.     .++|++++  +| +    
T Consensus         4 m~v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~i--~g-~----   70 (89)
T 3msz_A            4 MKVKIYTRNGCPYCVWAKQWFEENN------IAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFI--DD-E----   70 (89)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHTT------CCCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEEE--TT-E----
T ss_pred             eEEEEEEcCCChhHHHHHHHHHHcC------CCceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEEE--CC-E----
Confidence            3478899999999999988876542      1355666776644    457778888     89999854  44 2    


Q ss_pred             cCCCCCHHHHHHHHHHhhC
Q 026412          113 YGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus       113 ~~g~~~~~~l~~~l~~~~~  131 (239)
                      +.|  ..+++.+++.+..+
T Consensus        71 ~i~--g~~~i~~~~~~~~~   87 (89)
T 3msz_A           71 HIG--GFTELKANADKILN   87 (89)
T ss_dssp             EEE--SHHHHHHTHHHHTT
T ss_pred             EEe--ChHHHHHHHHHHhc
Confidence            222  46777777776543

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=98.37  E-value=9.2e-07  Score=70.45  Aligned_cols=91  Identities=13%  Similarity=0.103  Sum_probs=67.2

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-----------------------------chhH
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-----------------------------YKDL   88 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-----------------------------~~~l   88 (239)
                      ..++++++|| ++||+.|....+.+.++.+++.. .++.++.|.+|.                             ..++
T Consensus        28 Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~-~~v~vigIS~D~~~~~~~~~~~i~~~~~~~~~~~fpil~D~~~~v  106 (233)
T 2v2g_A           28 GNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKK-RGVKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETREL  106 (233)
T ss_dssp             CSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHH-TTEEEEEEESSCHHHHHHHHHHHHHHHTCCSSCSSCEEECTTCHH
T ss_pred             CCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHH-cCCEEEEEcCCCHHHHHHHHHHHHHhhCcccCCceEEEECChHHH
Confidence            3348899998 99999999999999999988864 357777776552                             1246


Q ss_pred             HHHcCCC------------CCCeEEEEeCCCcCccccCC----CCCHHHHHHHHHHhh
Q 026412           89 AEKYGVS------------GFPTLKFFPKGNKDGEEYGG----GRDLEDFVSFINEKC  130 (239)
Q Consensus        89 ~~~~~i~------------~~Pt~~~~~~g~~~~~~~~g----~~~~~~l~~~l~~~~  130 (239)
                      ++.|++.            .+|++++++++|+....+.|    .++.+++.+.|+...
T Consensus       107 a~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eilr~l~~Lq  164 (233)
T 2v2g_A          107 AVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYPATTGRNFSEILRVIDSLQ  164 (233)
T ss_dssp             HHHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HHHhCCcCcccccCCCcccccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            6677774            47899999877765544432    468899998887653

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=98.36  E-value=8.8e-07  Score=58.19  Aligned_cols=67  Identities=13%  Similarity=0.261  Sum_probs=45.9

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch----hHHHHcCCCCCCeEEEEeCCCcCccccCCCCCH
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDL  119 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~----~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~  119 (239)
                      ++.|+++||++|+++.+.+.+.        ++.+..+|++.++    ++.+.+++.++|+++  .+| +.   ..   ..
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~--------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~--~~g-~~---i~---g~   65 (82)
T 1fov_A            3 VEIYTKETCPYCHRAKALLSSK--------GVSFQELPIDGNAAKREEMIKRSGRTTVPQIF--IDA-QH---IG---GY   65 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH--------TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEE--ETT-EE---EE---SH
T ss_pred             EEEEECCCChhHHHHHHHHHHC--------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECC-EE---Ee---CH
Confidence            6779999999999999888764        2345566666432    456788999999984  344 32   22   24


Q ss_pred             HHHHHHHH
Q 026412          120 EDFVSFIN  127 (239)
Q Consensus       120 ~~l~~~l~  127 (239)
                      +++.+++.
T Consensus        66 ~~i~~~~~   73 (82)
T 1fov_A           66 DDLYALDA   73 (82)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            56666664

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=98.36  E-value=1.1e-06  Score=66.85  Aligned_cols=44  Identities=16%  Similarity=0.317  Sum_probs=31.6

Q ss_pred             CCCcEEE-EEECCCChHHh-hHhHHHHHHHHHccCCCCeEEEE-EeCc
Q 026412           39 QDRGALV-EFYAPWCGHCK-NLAPTYEKVAAAFTLEDDVVVAN-LDAD   83 (239)
Q Consensus        39 ~~k~vlV-~F~a~wC~~C~-~~~~~~~~~a~~~~~~~~v~~~~-vd~~   83 (239)
                      +++++++ .||+.||++|. ...|.+.+++++|+.. ++.++. |..|
T Consensus        42 ~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~-gv~vv~~iS~D   88 (173)
T 3mng_A           42 KGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAK-GVQVVACLSVN   88 (173)
T ss_dssp             TTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTT-TCCEEEEEESS
T ss_pred             CCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEEcCC
Confidence            4565555 55699999999 5899999999998754 355543 5544

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=98.35  E-value=8.4e-07  Score=59.83  Aligned_cols=54  Identities=19%  Similarity=0.416  Sum_probs=40.0

Q ss_pred             EEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch----hHHHHcCCCCCCeEEEEeCC
Q 026412           43 ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVSGFPTLKFFPKG  106 (239)
Q Consensus        43 vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~----~l~~~~~i~~~Pt~~~~~~g  106 (239)
                      -++.|+++||++|+++.+.+++.        ++.+..+|++.++    ++.+.+++.++|++  |.+|
T Consensus         7 ~v~ly~~~~C~~C~~~~~~L~~~--------~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l--~~~g   64 (92)
T 2khp_A            7 DVIIYTRPGCPYCARAKALLARK--------GAEFNEIDASATPELRAEMQERSGRNTFPQI--FIGS   64 (92)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHT--------TCCCEEEESTTSHHHHHHHHHHHTSSCCCEE--EETT
T ss_pred             cEEEEECCCChhHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECC
Confidence            47789999999999999888753        2456677776554    45558899999975  4454

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=98.34  E-value=1.7e-06  Score=66.75  Aligned_cols=43  Identities=14%  Similarity=0.426  Sum_probs=33.5

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHH---HHHHHHccCCCCeEEEEEe
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLD   81 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~---~~~a~~~~~~~~v~~~~vd   81 (239)
                      ..++.+|.|+..|||||+++.|.+   .++.+.++.+-.+.+..++
T Consensus        20 ~~~~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~~~v~~~~~~~~   65 (191)
T 3l9s_A           20 AGEPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPEGTKMTKYHVE   65 (191)
T ss_dssp             CSSSCEEEEECTTCHHHHHHHHTSCHHHHHHHHSCTTCCEEEEECS
T ss_pred             CCCCeEEEEECCCChhHHHhChhccchHHHHHhCCCCcEEEEEecc
Confidence            347899999999999999999986   6898988744344444444

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.30  E-value=8.7e-06  Score=62.00  Aligned_cols=101  Identities=9%  Similarity=0.077  Sum_probs=71.8

Q ss_pred             EcChhhHHHHh--------cCCCcEEEEEECCCChHHhhHhHHH---HHHHHHccCCCCeEEEEEeCccch---------
Q 026412           27 VLTEDNFEKEV--------GQDRGALVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDADKYK---------   86 (239)
Q Consensus        27 ~l~~~~f~~~~--------~~~k~vlV~F~a~wC~~C~~~~~~~---~~~a~~~~~~~~v~~~~vd~~~~~---------   86 (239)
                      ..-..+|++++        .+.|+++|+++++||+.|..+....   +++.+.+.  .++++...|++...         
T Consensus        34 ~F~~gs~~~Al~~A~~~~k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~--~nfV~w~~dv~~~e~~~~~~~~~  111 (178)
T 2ec4_A           34 VFFIGSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLS--QNFITWAWDLTKDSNRARFLTMC  111 (178)
T ss_dssp             CCCCSCHHHHHHTTTSSCTTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHH--HTEEEEEEECCSHHHHHHHHHHH
T ss_pred             CeeeCCHHHHHHHHHhhhhhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHH--cCEEEEEEeCCCchhhhhhhhhh
Confidence            33455666665        3578999999999999999996432   33334333  26888898987543         


Q ss_pred             ------hHHH---HcCCCCCCeEEEEeCCC---cCccccCCCCCHHHHHHHHHHh
Q 026412           87 ------DLAE---KYGVSGFPTLKFFPKGN---KDGEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus        87 ------~l~~---~~~i~~~Pt~~~~~~g~---~~~~~~~g~~~~~~l~~~l~~~  129 (239)
                            .++.   .|++.+||++.++...+   ....+..|..+++++.+.|.+.
T Consensus       112 ~~~~g~~~a~~~~~~~~~~~P~l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L~~~  166 (178)
T 2ec4_A          112 NRHFGSVVAQTIRTQKTDQFPLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAA  166 (178)
T ss_dssp             HHHTCHHHHHHHHHSCSTTCSEEEEECCCSSCCCEEEEECSCCCHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHhhcCCCCCCeEEEEEcCCCceEEEEEEeCCCCHHHHHHHHHHH
Confidence                  3443   38999999999985432   2356788999999999888654

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=98.29  E-value=5e-07  Score=65.31  Aligned_cols=68  Identities=18%  Similarity=0.367  Sum_probs=45.5

Q ss_pred             hhhHHHHhcCCCcEEEEEECCCChHHhhH-hHHHHHHHHHccCCCCeEEEEEeCccc-------hhHHHHcCCCCCCeEE
Q 026412           30 EDNFEKEVGQDRGALVEFYAPWCGHCKNL-APTYEKVAAAFTLEDDVVVANLDADKY-------KDLAEKYGVSGFPTLK  101 (239)
Q Consensus        30 ~~~f~~~~~~~k~vlV~F~a~wC~~C~~~-~~~~~~~a~~~~~~~~v~~~~vd~~~~-------~~l~~~~~i~~~Pt~~  101 (239)
                      .+.+++.+...+  ++.|+.+|||+|++. .+.+.+....     .+.+..+|++..       ..+.+.+|..++|++ 
T Consensus        27 ~~~v~~~i~~~~--Vvvy~~~~Cp~C~~a~k~~L~~~~~~-----~i~~~~vdvd~~~~~~~~~~~L~~~~g~~tVP~v-   98 (129)
T 3ctg_A           27 VAHVKDLIGQKE--VFVAAKTYCPYCKATLSTLFQELNVP-----KSKALVLELDEMSNGSEIQDALEEISGQKTVPNV-   98 (129)
T ss_dssp             HHHHHHHHHHSS--EEEEECTTCHHHHHHHHHHHTTSCCC-----GGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE-
T ss_pred             HHHHHHHHcCCC--EEEEECCCCCchHHHHHHHHHhcCcc-----CCCcEEEEccccCCHHHHHHHHHHHhCCCCCCEE-
Confidence            345666664443  678999999999999 8777654311     133444555432       367888999999996 


Q ss_pred             EEeCC
Q 026412          102 FFPKG  106 (239)
Q Consensus       102 ~~~~g  106 (239)
                       |.+|
T Consensus        99 -fi~g  102 (129)
T 3ctg_A           99 -YING  102 (129)
T ss_dssp             -EETT
T ss_pred             -EECC
Confidence             4455

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=98.25  E-value=7.2e-06  Score=65.86  Aligned_cols=103  Identities=9%  Similarity=0.056  Sum_probs=80.6

Q ss_pred             CCCcEEcC-hhhHHHHhcC-CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCe
Q 026412           22 ADDVVVLT-EDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT   99 (239)
Q Consensus        22 ~~~v~~l~-~~~f~~~~~~-~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt   99 (239)
                      ...+..++ .+++++.+.. ++.++|-|+.+||.   ...+.|.++|+.+.  +++.|+.+   .+.+++++|++.+ |+
T Consensus         5 gP~v~~l~s~~~~~~~~~~~~~v~vVgff~~~~~---~~~~~F~~~A~~lr--~~~~F~~t---~~~~v~~~~~v~~-p~   75 (250)
T 3ec3_A            5 SPPSKEILTLKQVQEFLKDGDDVVILGVFQGVGD---PGYLQYQDAANTLR--EDYKFHHT---FSTEIAKFLKVSL-GK   75 (250)
T ss_dssp             CCSSEECCCHHHHHHHHHHCSSCEEEEECSCTTC---HHHHHHHHHHHHHT--TTCCEEEE---CCHHHHHHHTCCS-SE
T ss_pred             CCCceecCCHHHHHHHHhcCCCeEEEEEEcCCCc---hHHHHHHHHHHhhh--cCcEEEEE---CcHHHHHHcCCCC-Ce
Confidence            45567774 5889998876 88999999999864   77889999999985  46778775   3568899999987 99


Q ss_pred             EEEEeCC------CcCccccC--CCCCHHHHHHHHHHhhCCC
Q 026412          100 LKFFPKG------NKDGEEYG--GGRDLEDFVSFINEKCGTS  133 (239)
Q Consensus       100 ~~~~~~g------~~~~~~~~--g~~~~~~l~~~l~~~~~~~  133 (239)
                      +++|+++      ......|.  |..+.++|.+|+....-+-
T Consensus        76 ivlfk~~~~~~kfde~~~~y~g~~~~~~~~l~~fi~~~~~Pl  117 (250)
T 3ec3_A           76 LVLMQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKHALPL  117 (250)
T ss_dssp             EEEECCGGGCCTTSCSCEEEECCTTSCHHHHHHHHHHHSSCT
T ss_pred             EEEEecchhhccccccceeccCCCCCCHHHHHHHHHHcCCCc
Confidence            9999863      13346777  4789999999999886443

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=98.24  E-value=1.6e-05  Score=61.75  Aligned_cols=43  Identities=23%  Similarity=0.332  Sum_probs=33.6

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHH-HHHHHHccCCCCeEEEEEe
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTY-EKVAAAFTLEDDVVVANLD   81 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~-~~~a~~~~~~~~v~~~~vd   81 (239)
                      ..+..||.|+...||+|+++.+.+ ..+.+.|...+++.+...+
T Consensus        28 ~a~vtvvef~D~~CP~C~~~~~~~~~~l~~~~~~~g~v~~~~~~   71 (202)
T 3gha_A           28 DAPVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVN   71 (202)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTTSEEEEEEE
T ss_pred             CCCEEEEEEECCCChhHHHHHHHhhHHHHHHhccCCeEEEEEEe
Confidence            356789999999999999999886 5666677655677777554

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*

Probab=98.23  E-value=1.8e-05  Score=62.57  Aligned_cols=41  Identities=12%  Similarity=0.203  Sum_probs=32.0

Q ss_pred             CCcEEEEEECCCChHHhhHhHHH-HHHHHHccCCCCeEEEEE
Q 026412           40 DRGALVEFYAPWCGHCKNLAPTY-EKVAAAFTLEDDVVVANL   80 (239)
Q Consensus        40 ~k~vlV~F~a~wC~~C~~~~~~~-~~~a~~~~~~~~v~~~~v   80 (239)
                      .+..++.|+...||+|+++.+.+ .++.+.+...+++.+...
T Consensus        39 A~vtIvef~Dy~CP~C~~~~~~~~~~l~~~~~~~g~V~~v~~   80 (226)
T 3f4s_A           39 APILMIEYASLTCYHCSLFHRNVFPKIKEKYIDTGKMLYIFR   80 (226)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHTHHHHHHHHTTTTSEEEEEE
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHHcccCCeEEEEEE
Confidence            45689999999999999999964 778777755556666644

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=98.23  E-value=2.1e-06  Score=60.51  Aligned_cols=62  Identities=18%  Similarity=0.314  Sum_probs=42.3

Q ss_pred             hhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc--c-----hhHHHHcCCCCCCeEEE
Q 026412           31 DNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK--Y-----KDLAEKYGVSGFPTLKF  102 (239)
Q Consensus        31 ~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~--~-----~~l~~~~~i~~~Pt~~~  102 (239)
                      +.+++.+.+++  ++.|+++|||+|++..+.+.+..        +.+..+|++.  +     ..+.+..|..++|++++
T Consensus         8 ~~~~~~i~~~~--v~vy~~~~Cp~C~~ak~~L~~~~--------i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~vfi   76 (114)
T 3h8q_A            8 RHLVGLIERSR--VVIFSKSYCPHSTRVKELFSSLG--------VECNVLELDQVDDGARVQEVLSEITNQKTVPNIFV   76 (114)
T ss_dssp             HHHHHHHHHCS--EEEEECTTCHHHHHHHHHHHHTT--------CCCEEEETTTSTTHHHHHHHHHHHHSCCSSCEEEE
T ss_pred             HHHHHHhccCC--EEEEEcCCCCcHHHHHHHHHHcC--------CCcEEEEecCCCChHHHHHHHHHHhCCCccCEEEE
Confidence            45666665444  44599999999999998887642        3344555552  2     23567788999999854

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=98.20  E-value=3.9e-05  Score=56.49  Aligned_cols=107  Identities=14%  Similarity=0.208  Sum_probs=79.9

Q ss_pred             CCcEEcChhhHHHHhcCCCcEEEE-EECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeC--ccchhHHHHcCCCC--C
Q 026412           23 DDVVVLTEDNFEKEVGQDRGALVE-FYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA--DKYKDLAEKYGVSG--F   97 (239)
Q Consensus        23 ~~v~~l~~~~f~~~~~~~k~vlV~-F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~--~~~~~l~~~~~i~~--~   97 (239)
                      .-|.+++.+|......++-++.+. |....-..-..+.+.+.++|+.++  +++.|+.+|.  +++....+.||+..  +
T Consensus        14 PLV~e~t~en~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fk--gki~Fv~vd~~~~~~~~~l~~fGl~~~~~   91 (147)
T 3bj5_A           14 PLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFK--GKILFAFIDSDHTDNQRILEFFGLKKEEC   91 (147)
T ss_dssp             -CEEECCTTTHHHHHSSSCCEEEEEECCTTSSSHHHHHHHHHHHHHTTT--TTCEEEEECTTCGGGHHHHHHTTCCGGGC
T ss_pred             CeeEEeccccHHHHhcCCCceEEEEEecCCcHhHHHHHHHHHHHHHHcC--CceEEEEEecchHhHHHHHHHcCCCcccC
Confidence            457889999998888776666555 443333345667899999999986  5799999999  66667889999995  9


Q ss_pred             CeEEEEeC-CCcCcccc-CCCCCHHHHHHHHHHhhC
Q 026412           98 PTLKFFPK-GNKDGEEY-GGGRDLEDFVSFINEKCG  131 (239)
Q Consensus        98 Pt~~~~~~-g~~~~~~~-~g~~~~~~l~~~l~~~~~  131 (239)
                      |++.++.. +......+ .+..+.+.+.+|+.+.+.
T Consensus        92 P~v~i~~~~~~~~Ky~~~~~~~t~~~i~~Fv~d~l~  127 (147)
T 3bj5_A           92 PAVRLITLEEEMTKYKPESEELTAERITEFCHRFLE  127 (147)
T ss_dssp             SEEEEEECSSSCEEECCSCCCCCHHHHHHHHHHHHT
T ss_pred             CEEEEEecccccccCCCCcccCCHHHHHHHHHHHHc
Confidence            99999875 32212233 378899999999998864

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=98.19  E-value=4e-06  Score=58.57  Aligned_cols=65  Identities=15%  Similarity=0.301  Sum_probs=46.2

Q ss_pred             hhhHHHHhcCCCcEEEEEEC-----CCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchh----HHHHcCCCCCCeE
Q 026412           30 EDNFEKEVGQDRGALVEFYA-----PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD----LAEKYGVSGFPTL  100 (239)
Q Consensus        30 ~~~f~~~~~~~k~vlV~F~a-----~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~  100 (239)
                      .+.+++++..++  ++.|+.     +||++|++..+.+.+.        ++.+..+|++.++.    +.+.+|..++|++
T Consensus         5 ~~~~~~~i~~~~--vvvy~~g~~~~~~Cp~C~~ak~~L~~~--------~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~i   74 (109)
T 1wik_A            5 SSGLKVLTNKAS--VMLFMKGNKQEAKCGFSKQILEILNST--------GVEYETFDILEDEEVRQGLKTFSNWPTYPQL   74 (109)
T ss_dssp             CCCHHHHHTTSS--EEEEESSTTTCCCSSTHHHHHHHHHHT--------CSCEEEEESSSCHHHHHHHHHHHSCCSSCEE
T ss_pred             HHHHHHHhccCC--EEEEEecCCCCCCCchHHHHHHHHHHc--------CCCeEEEECCCCHHHHHHHHHHhCCCCCCEE
Confidence            345777776554  445666     9999999998888654        35677888876653    5556788899985


Q ss_pred             EEEeCC
Q 026412          101 KFFPKG  106 (239)
Q Consensus       101 ~~~~~g  106 (239)
                        |.+|
T Consensus        75 --fi~g   78 (109)
T 1wik_A           75 --YVRG   78 (109)
T ss_dssp             --ECSS
T ss_pred             --EECC
Confidence              4455

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=98.09  E-value=1.6e-05  Score=62.76  Aligned_cols=86  Identities=12%  Similarity=0.098  Sum_probs=60.0

Q ss_pred             CCCcEEEEEECCC-ChHHh-----hHhHHHHHHHHHccCCCCeEEEEEeCcc-----------------------chhHH
Q 026412           39 QDRGALVEFYAPW-CGHCK-----NLAPTYEKVAAAFTLEDDVVVANLDADK-----------------------YKDLA   89 (239)
Q Consensus        39 ~~k~vlV~F~a~w-C~~C~-----~~~~~~~~~a~~~~~~~~v~~~~vd~~~-----------------------~~~l~   89 (239)
                      .+++++|+||..| ||+|.     ...+.+.+.   +   .++.++.|..|.                       +..++
T Consensus        47 ~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~---~gv~VvgIS~Ds~~~~~~f~~~~gl~~fplLsD~~~~~va  120 (224)
T 3keb_A           47 SHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W---PHLKLIVITVDSPSSLARARHEHGLPNIALLSTLRGRDFH  120 (224)
T ss_dssp             TTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C---TTSEEEEEESSCHHHHHHHHHHHCCTTCEEEESTTCTTHH
T ss_pred             CCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c---CCCEEEEEECCCHHHHHHHHHHcCCCCceEEEcCCchHHH
Confidence            4689999999988 99999     767776665   4   246666665442                       24677


Q ss_pred             HHcCCCC---------CCeEEEEeCCCcCccc-----cCCCCCHHHHHHHHHHhh
Q 026412           90 EKYGVSG---------FPTLKFFPKGNKDGEE-----YGGGRDLEDFVSFINEKC  130 (239)
Q Consensus        90 ~~~~i~~---------~Pt~~~~~~g~~~~~~-----~~g~~~~~~l~~~l~~~~  130 (239)
                      +.||+..         .|+.++++++|.....     +.+..+.+++.+.|+...
T Consensus       121 k~yGv~~~~~~~~G~~~p~tfvID~dG~I~~~~~~~~~~~~pd~~evl~~L~~l~  175 (224)
T 3keb_A          121 KRYGVLITEYPLSGYTSPAIILADAANVVHYSERLANTRDFFDFDAIEKLLQEGE  175 (224)
T ss_dssp             HHTTCBCCSTTSTTCBCCEEEEECTTCBEEEEEECSBTTCCCCHHHHHHHHHHHH
T ss_pred             HHhCCccccccccCCccCEEEEEcCCCEEEEEEecCCCCCCCCHHHHHHHHHHhh
Confidence            8888864         6888888766654432     234567888888876654

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=98.07  E-value=2.6e-05  Score=66.47  Aligned_cols=106  Identities=10%  Similarity=-0.015  Sum_probs=82.3

Q ss_pred             CCCcEEcChhhHHHHhcCCCcEEEEEECCCCh-HHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCC--CCC
Q 026412           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCG-HCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS--GFP   98 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~-~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~--~~P   98 (239)
                      ...+.+++.+++.+....+.++++.|+.+||. .|..+...+.+++..+.  +.+.|+.+|++....+++.||+.  .+|
T Consensus       218 ~p~v~elt~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~--~~i~f~~id~~~~~~~~~~~gl~~~~~P  295 (382)
T 2r2j_A          218 VPLVREITFENGEELTEEGLPFLILFHMKEDTESLEIFQNEVARQLISEK--GTINFLHADCDKFRHPLLHIQKTPADCP  295 (382)
T ss_dssp             SCSSEECCHHHHHHHHTTCCCEEEEEECTTCCHHHHHHHHHHHHHTGGGT--TTSEEEEEETTTTHHHHHHTTCCGGGCS
T ss_pred             cCceEecChhhHHHHhcCCCcEEEEEecCCchHHHHHHHHHHHHHHHHhC--CeeEEEEEchHHhHHHHHHcCCCccCCC
Confidence            46788999999999888889999999999984 45556666666665654  57999999999988899999998  689


Q ss_pred             eEEEEeCCCcCcccc---CCCCCHHHHHHHHHHhhC
Q 026412           99 TLKFFPKGNKDGEEY---GGGRDLEDFVSFINEKCG  131 (239)
Q Consensus        99 t~~~~~~g~~~~~~~---~g~~~~~~l~~~l~~~~~  131 (239)
                      ++.++..+ .. ..|   .+..+.+.+.+|+++...
T Consensus       296 ~i~i~~~~-~~-y~~~~~~~~~~~~~i~~F~~d~~~  329 (382)
T 2r2j_A          296 VIAIDSFR-HM-YVFGDFKDVLIPGKLKQFVFDLHS  329 (382)
T ss_dssp             EEEEECSS-CE-EECCCSGGGGSTTHHHHHHHHHHH
T ss_pred             EEEEEcch-hc-CCCCccccccCHHHHHHHHHHHHC
Confidence            99888654 22 223   344477899999988764

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=97.89  E-value=2.2e-05  Score=56.33  Aligned_cols=67  Identities=15%  Similarity=0.218  Sum_probs=44.1

Q ss_pred             hhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc-----hhHHHHcCCCCCCeEEE
Q 026412           31 DNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-----KDLAEKYGVSGFPTLKF  102 (239)
Q Consensus        31 ~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~-----~~l~~~~~i~~~Pt~~~  102 (239)
                      ++|++++..++  ++.|+.+|||+|++....+.+... +.  ..+..+.||.+.+     ..+.+..|...+|++++
T Consensus         5 ~~~~~ii~~~~--Vvvysk~~Cp~C~~ak~lL~~~~~-~~--v~~~~idid~~~d~~~~~~~l~~~~G~~tVP~IfI   76 (127)
T 3l4n_A            5 KEYSLILDLSP--IIIFSKSTCSYSKGMKELLENEYQ-FI--PNYYIIELDKHGHGEELQEYIKLVTGRGTVPNLLV   76 (127)
T ss_dssp             HHHHHHHTSCS--EEEEECTTCHHHHHHHHHHHHHEE-EE--SCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEE
T ss_pred             HHHHHHHccCC--EEEEEcCCCccHHHHHHHHHHhcc-cC--CCcEEEEecCCCCHHHHHHHHHHHcCCCCcceEEE
Confidence            56888886554  888999999999999988876311 11  1345555554422     12434568889999743

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=97.81  E-value=0.00012  Score=58.60  Aligned_cols=107  Identities=13%  Similarity=0.132  Sum_probs=79.1

Q ss_pred             CCCcEEcChhhHHHHhcCCCcEEEEEECCCCh---H-HhhHhHHHHHHHHHccC-CCCeEEEEEeCccchhHHHHcCC--
Q 026412           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCG---H-CKNLAPTYEKVAAAFTL-EDDVVVANLDADKYKDLAEKYGV--   94 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~---~-C~~~~~~~~~~a~~~~~-~~~v~~~~vd~~~~~~l~~~~~i--   94 (239)
                      -..+.+++.+++...  .+.+++|.|+.+.+.   . ...+...+.++|+.+.. ...+.|+.+|+++...+++.||+  
T Consensus       113 ~Plv~e~t~~n~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~k~~~~~F~~~d~~~~~~~~~~fgl~~  190 (252)
T 2h8l_A          113 FGICPHMTEDNKDLI--QGKDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLES  190 (252)
T ss_dssp             SCSSCEECTTTHHHH--SSSSEEEEEECCBTTTBHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEETTTTHHHHGGGTCCC
T ss_pred             cCCeeecccccHhhh--cCCCeEEEEeecchhhcchhHHHHHHHHHHHHHHccccCceEEEEEEchHHHHHHHHHcCCCC
Confidence            367888999999886  345667777754332   1 22467788889999874 23499999999988889999999  


Q ss_pred             C--CCCeEEEEeCCCcCccccCCCCCHHH--HHHHHHHhhC
Q 026412           95 S--GFPTLKFFPKGNKDGEEYGGGRDLED--FVSFINEKCG  131 (239)
Q Consensus        95 ~--~~Pt~~~~~~g~~~~~~~~g~~~~~~--l~~~l~~~~~  131 (239)
                      .  .+|.+.++..++ ....+.+..+.+.  |.+|+++...
T Consensus       191 ~~~~~P~v~i~~~~~-~ky~~~~~~t~~~~~i~~F~~~~~~  230 (252)
T 2h8l_A          191 TAGEIPVVAIRTAKG-EKFVMQEEFSRDGKALERFLQDYFD  230 (252)
T ss_dssp             CSCSSCEEEEECTTS-CEEECCSCCCTTSHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEEeCcC-cEecCCcccCcchHHHHHHHHHHHC
Confidence            3  599999986532 3344567778888  9999988763

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=97.73  E-value=0.00044  Score=52.55  Aligned_cols=40  Identities=18%  Similarity=0.247  Sum_probs=30.6

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHH-HHHHHHccCCCCeEEE
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTY-EKVAAAFTLEDDVVVA   78 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~-~~~a~~~~~~~~v~~~   78 (239)
                      ..+..|+.|+.+.||+|..+.+.+ ..+.+.+...+++.+.
T Consensus        10 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~l~~~~~~~~~v~~~   50 (186)
T 3bci_A           10 NGKPLVVVYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQ   50 (186)
T ss_dssp             -CCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSSEEE
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHHHHhccCCeEEEE
Confidence            456789999999999999999998 5677777544455554

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=97.73  E-value=0.00015  Score=56.74  Aligned_cols=90  Identities=13%  Similarity=0.199  Sum_probs=67.7

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----------------------------chhHH
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA   89 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (239)
                      .+|+++++|| +.||+.|....+.+.+...+|... ++.++.|.+|.                            +.+++
T Consensus        51 ~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~-g~~vigiS~Ds~~sh~aw~~~~~~~~~~~~l~fpllsD~~~~va  129 (216)
T 3sbc_A           51 KGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQ-GAQVLFASTDSEYSLLAWTNIPRKEGGLGPINIPLLADTNHSLS  129 (216)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHH
T ss_pred             CCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccC-CceEEEeecCchhhHHHHHHHHHHhCCccCcccceEeCCCCHHH
Confidence            4689999999 999999999999999999988643 57777777652                            23688


Q ss_pred             HHcCCC------CCCeEEEEeCCCcCcc----ccCCCCCHHHHHHHHHHh
Q 026412           90 EKYGVS------GFPTLKFFPKGNKDGE----EYGGGRDLEDFVSFINEK  129 (239)
Q Consensus        90 ~~~~i~------~~Pt~~~~~~g~~~~~----~~~g~~~~~~l~~~l~~~  129 (239)
                      +.||+-      .++.++++++.|....    ...-+|+.++++..|+..
T Consensus       130 k~YGv~~~~~g~~~R~tFiID~~G~Ir~~~v~~~~~grn~dEiLr~l~Al  179 (216)
T 3sbc_A          130 RDYGVLIEEEGVALRGLFIIDPKGVIRHITINDLPVGRNVDEALRLVEAF  179 (216)
T ss_dssp             HHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHcCCeeccCCceeeEEEEECCCCeEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence            899883      3577788877765422    123358999998888653

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=97.64  E-value=0.00016  Score=60.30  Aligned_cols=87  Identities=9%  Similarity=0.090  Sum_probs=63.1

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc---------------------chhHHHHcCCC-
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------YKDLAEKYGVS-   95 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~---------------------~~~l~~~~~i~-   95 (239)
                      .+|+++++|| +.||+.|....+.|.+   . . ..++.++.|..|.                     +.++++.||+. 
T Consensus        23 ~Gk~vvl~F~p~~~tp~C~~e~~~~~~---~-~-~~~~~v~gis~D~~~~~~~f~~~~~l~fp~l~D~~~~v~~~ygv~~   97 (322)
T 4eo3_A           23 YGKYTILFFFPKAGTSGSTREAVEFSR---E-N-FEKAQVVGISRDSVEALKRFKEKNDLKVTLLSDPEGILHEFFNVLE   97 (322)
T ss_dssp             TTSEEEEEECSSTTSHHHHHHHHHHHH---S-C-CTTEEEEEEESCCHHHHHHHHHHHTCCSEEEECTTCHHHHHTTCEE
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHH---H-h-hCCCEEEEEeCCCHHHHHHHHHhhCCceEEEEcCchHHHHhcCCCC
Confidence            5789999999 6799999987777753   1 1 2357787777652                     24788899984 


Q ss_pred             ---CCCeEEEEeCCCcCccccCC---CCCHHHHHHHHHHhh
Q 026412           96 ---GFPTLKFFPKGNKDGEEYGG---GRDLEDFVSFINEKC  130 (239)
Q Consensus        96 ---~~Pt~~~~~~g~~~~~~~~g---~~~~~~l~~~l~~~~  130 (239)
                         .+|+.++++++|.....|.+   ....+++.+++++..
T Consensus        98 ~~~~~r~tfiId~~G~i~~~~~~v~~~~h~~~~l~~~~~~~  138 (322)
T 4eo3_A           98 NGKTVRSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRLI  138 (322)
T ss_dssp             TTEECCEEEEECTTSBEEEEEESCCSTTHHHHHHHHHHHHH
T ss_pred             CCcCccEEEEECCCCEEEEEEeCCCccccHHHHHHHHhhhc
Confidence               47888889887776555544   356888999888764

>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}

Probab=97.63  E-value=0.0012  Score=51.21  Aligned_cols=40  Identities=20%  Similarity=0.290  Sum_probs=30.4

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHH-HccCCCCeEEE
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAA-AFTLEDDVVVA   78 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~-~~~~~~~v~~~   78 (239)
                      ..+.++|.|...-||+|+++.+.+....+ .|...+++.++
T Consensus        14 ~a~vtivef~D~~Cp~C~~~~~~~~~~l~~~~i~~g~v~~v   54 (205)
T 3gmf_A           14 AAKLRLVEFVSYTCPHCSHFEIESEGQLKIGMVQPGKGAIE   54 (205)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSEEEE
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence            35678999999999999999988755544 66445666666

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=97.60  E-value=0.0016  Score=51.92  Aligned_cols=105  Identities=15%  Similarity=0.112  Sum_probs=78.6

Q ss_pred             CCCcEEcChhhHHHHhcCCCcEEEEEECC-CC---h-HHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCC
Q 026412           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAP-WC---G-HCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG   96 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~-wC---~-~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~   96 (239)
                      -.-+.+++.+|+.... .++++++.|+.+ ++   . .+..+...+.++|+.++   ++.|+.+|+++.....+.||+..
T Consensus       115 ~Plv~e~t~~n~~~~~-~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~~vAk~~k---ki~F~~~d~~~~~~~l~~fgl~~  190 (250)
T 3ec3_A          115 LPLVGHRKTSNDAKRY-SKRPLVVVYYSVDFSFDYRTATQFWRNKVLEVAKDFP---EYTFAIADEEDYATEVKDLGLSE  190 (250)
T ss_dssp             SCTEEEECTTTHHHHS-CSSSEEEEEECCCCSTTTHHHHHHHHHHHHHHHTTCT---TSEEEEEETTTTHHHHHHTTCSS
T ss_pred             CCceeecCccchhhhh-ccCccEEEEEecccccccchhHHHHHHHHHHHHHhhc---ceeEEEEcHHHHHHHHHHcCCCc
Confidence            4678899999998877 467877777753 33   3 34557888999999986   69999999998888889999974


Q ss_pred             --CC-eEEEEeCCCcCccccC-CCCCHHHHHHHHHHhhC
Q 026412           97 --FP-TLKFFPKGNKDGEEYG-GGRDLEDFVSFINEKCG  131 (239)
Q Consensus        97 --~P-t~~~~~~g~~~~~~~~-g~~~~~~l~~~l~~~~~  131 (239)
                        +| .++++..++ ....+. +..+.+.|.+|+++...
T Consensus       191 ~~~~p~~~~~~~~~-~ky~~~~~~~t~~~i~~Fv~~~~~  228 (250)
T 3ec3_A          191 SGGDVNAAILDESG-KKFAMEPEEFDSDALREFVMAFKK  228 (250)
T ss_dssp             CSCSCEEEEECTTS-CEEECCCCSCCHHHHHHHHHHHHT
T ss_pred             cCCCcEEEEEcCCC-ceecCCcccCCHHHHHHHHHHHHC
Confidence              44 666665442 333344 67899999999998764

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=97.59  E-value=0.00014  Score=55.04  Aligned_cols=51  Identities=12%  Similarity=0.257  Sum_probs=37.1

Q ss_pred             hHHHHhcCCCcEEEEEECCCChHHhh-HhHHHHHHHHHccCCCCe-EEEEEeCc
Q 026412           32 NFEKEVGQDRGALVEFYAPWCGHCKN-LAPTYEKVAAAFTLEDDV-VVANLDAD   83 (239)
Q Consensus        32 ~f~~~~~~~k~vlV~F~a~wC~~C~~-~~~~~~~~a~~~~~~~~v-~~~~vd~~   83 (239)
                      ++.+....++.+++.|++.|||.|.. ..|.|.+..++++.. ++ .++.|.+|
T Consensus        40 sLsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~-g~d~VigIS~D   92 (176)
T 4f82_A           40 SVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAA-GIDEIWCVSVN   92 (176)
T ss_dssp             EHHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHT-TCCEEEEEESS
T ss_pred             eHHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhC-CCCEEEEEeCC
Confidence            34444444445667788999999999 999999999888643 46 66666665

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=97.58  E-value=0.00081  Score=53.36  Aligned_cols=99  Identities=11%  Similarity=0.096  Sum_probs=68.1

Q ss_pred             EEcChhhHHHHh--cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEE
Q 026412           26 VVLTEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF  103 (239)
Q Consensus        26 ~~l~~~~f~~~~--~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~  103 (239)
                      ...+..++...+  +..+++.+.|....|..++.       ++..+...+.+.+..++- .+..++++|||+++|++++|
T Consensus       141 ~~~~~~~l~~~~~~~~~~~~al~f~~~~~~~~~~-------~~~d~~~~~~i~v~~~~~-~~~~l~~~f~v~~~Pslvl~  212 (244)
T 3q6o_A          141 EPAXLEEIDGFFARNNEEYLALIFEXGGSYLARE-------VALDLSQHKGVAVRRVLN-TEANVVRKFGVTDFPSCYLL  212 (244)
T ss_dssp             SCCCHHHHHTHHHHCCCSEEEEEEECTTCCHHHH-------HHHHTTTCTTEEEEEEET-TCHHHHHHHTCCCSSEEEEE
T ss_pred             ccccHHHHHHHhhcCCCceEEEEEEECCcchHHH-------HHHHhccCCceEEEEEeC-chHHHHHHcCCCCCCeEEEE
Confidence            455677777776  56678888898877654333       344454445677776653 45789999999999999999


Q ss_pred             eCCCcCccccCCCCCHHHHHHHHHHhhCC
Q 026412          104 PKGNKDGEEYGGGRDLEDFVSFINEKCGT  132 (239)
Q Consensus       104 ~~g~~~~~~~~g~~~~~~l~~~l~~~~~~  132 (239)
                      .++|+....-.+..+.+.+..++++..|.
T Consensus       213 ~~~g~~~~~~~~~~~r~~~~~~l~~~~~~  241 (244)
T 3q6o_A          213 FRNGSVSRVPVLMESRSFYTAYLQRLSGL  241 (244)
T ss_dssp             ETTSCEEECCCSSSSHHHHHHHHHTC---
T ss_pred             eCCCCeEeeccccccHHHHHHHHHhCCCC
Confidence            87765444334556778888888877653

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=97.53  E-value=0.00068  Score=54.67  Aligned_cols=83  Identities=19%  Similarity=0.285  Sum_probs=55.7

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc------------------cchhHHHHcCCCCC--C
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD------------------KYKDLAEKYGVSGF--P   98 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~------------------~~~~l~~~~~i~~~--P   98 (239)
                      +....+..|++++||+|.+....+.+++..+    ++....++++                  ....+.+++|.+++  |
T Consensus        41 ~~~~~VelyTs~gCp~C~~Ak~lL~~~~~~~----~vi~l~~~v~~~dylgw~D~~a~~~~~~r~~~~~~~~G~~tVyTP  116 (270)
T 2axo_A           41 AVKGVVELFTSQGCASCPPADEALRKMIQKG----DVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTP  116 (270)
T ss_dssp             CCCCEEEEEECTTCTTCHHHHHHHHHHHHHT----SSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSS
T ss_pred             CCCcEEEEEeCCCCCChHHHHHHHHHhhccC----CeeeEEEEEEEecccccccchhhhhhhHHHHHHHHHhCCCcccCC
Confidence            3346788899999999999999999998764    3432222221                  12347788999988  9


Q ss_pred             eEEEEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412           99 TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus        99 t~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      .+++  +| ..   ..|..+.+.+.+.|.+...
T Consensus       117 qI~I--ng-~~---~v~G~d~~~l~~~l~~~~~  143 (270)
T 2axo_A          117 QAIL--NG-RD---HVKGADVRGIYDRLDAFKR  143 (270)
T ss_dssp             EEEE--TT-TE---EEETTCHHHHHHHHHHHHH
T ss_pred             EEEE--CC-EE---eecCCCHHHHHHHHHHhhc
Confidence            9655  44 21   2233467888888876543

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=97.42  E-value=0.00019  Score=51.98  Aligned_cols=65  Identities=18%  Similarity=0.357  Sum_probs=41.6

Q ss_pred             hhHHHHhcCCCcEEEEEEC----CCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchh----HHHHcCCCCCCeEEE
Q 026412           31 DNFEKEVGQDRGALVEFYA----PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD----LAEKYGVSGFPTLKF  102 (239)
Q Consensus        31 ~~f~~~~~~~k~vlV~F~a----~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~~~  102 (239)
                      +.+++.+..+ .++|+.++    ||||+|++....+.+.        ++.+..+|++.+++    +.+..|...+|.+  
T Consensus        26 ~~v~~~i~~~-~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~--------gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~V--   94 (135)
T 2wci_A           26 EKIQRQIAEN-PILLYMKGSPKLPSCGFSAQAVQALAAC--------GERFAYVDILQNPDIRAELPKYANWPTFPQL--   94 (135)
T ss_dssp             HHHHHHHHHC-SEEEEESBCSSSBSSHHHHHHHHHHHTT--------CSCCEEEEGGGCHHHHHHHHHHHTCCSSCEE--
T ss_pred             HHHHHHhccC-CEEEEEEecCCCCCCccHHHHHHHHHHc--------CCceEEEECCCCHHHHHHHHHHHCCCCcCEE--
Confidence            4455555443 45554444    9999999998877643        35567778775544    4445688899986  


Q ss_pred             EeCC
Q 026412          103 FPKG  106 (239)
Q Consensus       103 ~~~g  106 (239)
                      |.+|
T Consensus        95 fI~G   98 (135)
T 2wci_A           95 WVDG   98 (135)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            4344

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=97.36  E-value=0.00048  Score=45.58  Aligned_cols=51  Identities=16%  Similarity=0.175  Sum_probs=36.4

Q ss_pred             EEEEECC----CChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc-----cch----hHHHHcCCC-----CCCeEEE
Q 026412           44 LVEFYAP----WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-----KYK----DLAEKYGVS-----GFPTLKF  102 (239)
Q Consensus        44 lV~F~a~----wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~-----~~~----~l~~~~~i~-----~~Pt~~~  102 (239)
                      ++.|+.+    ||++|++....+.+.        ++.+-.+|++     .++    ++.+..|..     .+|++++
T Consensus         2 v~iY~~~~~~~~Cp~C~~ak~~L~~~--------gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~v~i   70 (87)
T 1aba_A            2 FKVYGYDSNIHKCGPCDNAKRLLTVK--------KQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFA   70 (87)
T ss_dssp             EEEEECCTTTSCCHHHHHHHHHHHHT--------TCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEEC
T ss_pred             EEEEEeCCCCCcCccHHHHHHHHHHc--------CCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCEEEE
Confidence            5678899    999999998777652        2445566666     443    466778888     8998643

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=97.36  E-value=0.0014  Score=53.90  Aligned_cols=105  Identities=17%  Similarity=0.260  Sum_probs=74.5

Q ss_pred             hcCCCcEEc-ChhhHHHHhcC-CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHH--HHcC--
Q 026412           20 ALADDVVVL-TEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLA--EKYG--   93 (239)
Q Consensus        20 ~~~~~v~~l-~~~~f~~~~~~-~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~--~~~~--   93 (239)
                      .....+..+ +.+++++.+.. +++.++.|...     ....+.|.++|..+.  +.+.|+.++-++-..+.  ++|+  
T Consensus       140 ~~~~~v~~i~~~~~l~~~l~~~~~~~vi~fs~~-----~~~~~~f~~~A~~~~--~~~~F~~v~~~~~a~~~~~~~~~~~  212 (298)
T 3ed3_A          140 RIRSYVKKFVRIDTLGSLLRKSPKLSVVLFSKQ-----DKISPVYKSIALDWL--GKFDFYSISNKKLKQLTDMNPTYEK  212 (298)
T ss_dssp             TCCCCEEECSCGGGHHHHHTSCSSEEEEEEESS-----SSCCHHHHHHHHHTB--TTEEEEEEEGGGCCCCCTTCTTSTT
T ss_pred             hcccccEEcCCHHHHHHHHhcCCceEEEEEcCC-----CcchHHHHHHHHHhh--cCcEEEEEcchHhhhhhhhhhhccc
Confidence            345667777 45789998854 56777776332     244678999999986  47999988754322222  2232  


Q ss_pred             ---C-------------CCCCeEEEEeCCCcCccccCC-CCCHHHHHHHHHHhhC
Q 026412           94 ---V-------------SGFPTLKFFPKGNKDGEEYGG-GRDLEDFVSFINEKCG  131 (239)
Q Consensus        94 ---i-------------~~~Pt~~~~~~g~~~~~~~~g-~~~~~~l~~~l~~~~~  131 (239)
                         |             ...|++++|++....+..|.| ..+.+++.+||.+..+
T Consensus       213 ~p~i~~~~~~~~~~~~~~~~P~lv~~~~~~~~~~~y~g~~~~~~~i~~fi~~~~~  267 (298)
T 3ed3_A          213 TPEIFKYLQKVIPEQRQSDKSKLVVFDADKDKFWEYEGNSINKNDISKFLRDTFS  267 (298)
T ss_dssp             CHHHHHHHHHHHHHHTTCSSCEEEEEETTTTEEEECCCSSCCHHHHHHHHHHHHT
T ss_pred             CcchhhhhhcccccccccCCCeEEEEcCCCCceEEeccccCCHHHHHHHHHhhcC
Confidence               2             579999999987677889986 6899999999997654

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=97.30  E-value=0.00043  Score=48.28  Aligned_cols=60  Identities=17%  Similarity=0.306  Sum_probs=38.7

Q ss_pred             HHHHhcCCCcEEEEEEC-----CCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhH----HHHcCCCCCCeEEE
Q 026412           33 FEKEVGQDRGALVEFYA-----PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDL----AEKYGVSGFPTLKF  102 (239)
Q Consensus        33 f~~~~~~~k~vlV~F~a-----~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l----~~~~~i~~~Pt~~~  102 (239)
                      .++.+.++  -+|.|..     +|||+|++....+.+.        ++.+..+|++.+++.    .+..|...+|.+++
T Consensus         9 v~~~i~~~--~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~--------gi~y~~~di~~d~~~~~~l~~~~g~~tvP~ifi   77 (111)
T 3zyw_A            9 LKKLTHAA--PCMLFMKGTPQEPRCGFSKQMVEILHKH--------NIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLYV   77 (111)
T ss_dssp             HHHHHTSS--SEEEEESBCSSSBSSHHHHHHHHHHHHT--------TCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEE
T ss_pred             HHHHHhcC--CEEEEEecCCCCCcchhHHHHHHHHHHc--------CCCeEEEECcCCHHHHHHHHHHHCCCCCCEEEE
Confidence            34444433  3456677     9999999998777643        244566777655443    33447788999743

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=97.29  E-value=0.00064  Score=47.18  Aligned_cols=59  Identities=22%  Similarity=0.412  Sum_probs=37.4

Q ss_pred             HHHHhcCCCcEEEEEEC-----CCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchh----HHHHcCCCCCCeEE
Q 026412           33 FEKEVGQDRGALVEFYA-----PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD----LAEKYGVSGFPTLK  101 (239)
Q Consensus        33 f~~~~~~~k~vlV~F~a-----~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~~  101 (239)
                      +++++.++ .++| |..     ||||+|++....+.+.        ++.+..+|++.+++    +.+..|...+|.++
T Consensus        11 v~~~i~~~-~Vvv-y~k~t~~~p~Cp~C~~ak~~L~~~--------gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~if   78 (109)
T 3ipz_A           11 LEKLVNSE-KVVL-FMKGTRDFPMCGFSNTVVQILKNL--------NVPFEDVNILENEMLRQGLKEYSNWPTFPQLY   78 (109)
T ss_dssp             HHHHHTSS-SEEE-EESBCSSSBSSHHHHHHHHHHHHT--------TCCCEEEEGGGCHHHHHHHHHHHTCSSSCEEE
T ss_pred             HHHHHccC-CEEE-EEecCCCCCCChhHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHHHCCCCCCeEE
Confidence            44555444 3443 444     5999999998877753        24456677765543    44445888999763

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=97.25  E-value=0.001  Score=47.06  Aligned_cols=62  Identities=16%  Similarity=0.188  Sum_probs=37.8

Q ss_pred             HHHHhcCCCcEEEEEEC-----CCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchh----HHHHcCCCCCCeEE
Q 026412           33 FEKEVGQDRGALVEFYA-----PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD----LAEKYGVSGFPTLK  101 (239)
Q Consensus        33 f~~~~~~~k~vlV~F~a-----~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~~  101 (239)
                      +++++.+++ + |.|..     ||||+|++....+.+..-.+     -.+..+|++.+++    +.+..|...+|.++
T Consensus         9 v~~~i~~~~-V-vvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~-----~~~~~~dv~~~~~~~~~l~~~sg~~tvP~vf   79 (121)
T 3gx8_A            9 IEDAIESAP-V-VLFMKGTPEFPKCGFSRATIGLLGNQGVDP-----AKFAAYNVLEDPELREGIKEFSEWPTIPQLY   79 (121)
T ss_dssp             HHHHHHSCS-E-EEEESBCSSSBCTTHHHHHHHHHHHHTBCG-----GGEEEEECTTCHHHHHHHHHHHTCCSSCEEE
T ss_pred             HHHHhccCC-E-EEEEeccCCCCCCccHHHHHHHHHHcCCCc-----ceEEEEEecCCHHHHHHHHHHhCCCCCCeEE
Confidence            445555444 3 33443     59999999988887652111     1155666665543    44455788899873

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=97.24  E-value=0.00058  Score=45.83  Aligned_cols=50  Identities=10%  Similarity=0.126  Sum_probs=34.9

Q ss_pred             EEEEECCCChHH------hhHhHHHHHHHHHccCCCCeEEEEEeCccch----hHHHHcC--CCCCCeEE
Q 026412           44 LVEFYAPWCGHC------KNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYG--VSGFPTLK  101 (239)
Q Consensus        44 lV~F~a~wC~~C------~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~----~l~~~~~--i~~~Pt~~  101 (239)
                      ++.|+.+||++|      ++....+.+    .    ++.+..+|++.++    .+.+.+|  ...+|.++
T Consensus         4 v~ly~~~~C~~c~~~~~~~~ak~~L~~----~----~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~if   65 (93)
T 1t1v_A            4 LRVYSTSVTGSREIKSQQSEVTRILDG----K----RIQYQLVDISQDNALRDEMRTLAGNPKATPPQIV   65 (93)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHHH----T----TCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEE
T ss_pred             EEEEEcCCCCCchhhHHHHHHHHHHHH----C----CCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEE
Confidence            677899999999      666555542    2    3567778887553    4555778  66899863

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.20  E-value=0.00066  Score=47.27  Aligned_cols=51  Identities=14%  Similarity=0.174  Sum_probs=34.8

Q ss_pred             EEEEEECCCChHHh------hHhHHHHHHHHHccCCCCeEEEEEeCccchh----HHHHc--------CCCCCCeEE
Q 026412           43 ALVEFYAPWCGHCK------NLAPTYEKVAAAFTLEDDVVVANLDADKYKD----LAEKY--------GVSGFPTLK  101 (239)
Q Consensus        43 vlV~F~a~wC~~C~------~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~----l~~~~--------~i~~~Pt~~  101 (239)
                      -++.|+.+||++|+      +....+++    .    ++.+..+|++.+++    +.+++        +...+|.++
T Consensus         9 ~V~vy~~~~C~~C~~~~~~~~ak~~L~~----~----gi~y~~vdI~~~~~~~~~l~~~~~~~~~~~~g~~tvP~vf   77 (111)
T 2ct6_A            9 VIRVFIASSSGFVAIKKKQQDVVRFLEA----N----KIEFEEVDITMSEEQRQWMYKNVPPEKKPTQGNPLPPQIF   77 (111)
T ss_dssp             CEEEEECSSCSCHHHHHHHHHHHHHHHH----T----TCCEEEEETTTCHHHHHHHHHSCCTTTCCSSSSCCSCEEE
T ss_pred             EEEEEEcCCCCCcccchhHHHHHHHHHH----c----CCCEEEEECCCCHHHHHHHHHHhcccccccCCCCCCCEEE
Confidence            47788999999999      55555543    2    36677888876543    44444        666789863

>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}

Probab=97.14  E-value=0.0029  Score=48.93  Aligned_cols=44  Identities=20%  Similarity=0.144  Sum_probs=33.4

Q ss_pred             hHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412           87 DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus        87 ~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      ..+.++||.|+|++++..+| +......|..+.+.+.+.|++.+.
T Consensus       160 ~~a~~~gv~g~Pt~~v~~~~-~~~~~~~g~~~~e~~~~~i~~~~~  203 (208)
T 3kzq_A          160 SLAKSLGVNSYPSLVLQIND-AYFPIEVDYLSTEPTLKLIRERII  203 (208)
T ss_dssp             HHHHHTTCCSSSEEEEEETT-EEEEECCCSSCSHHHHHHHHHHHH
T ss_pred             HHHHHcCCCcccEEEEEECC-EEEEeeCCCCCHHHHHHHHHHHHh
Confidence            45568899999999887655 444455788888999998887654

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=97.12  E-value=0.0011  Score=51.88  Aligned_cols=90  Identities=18%  Similarity=0.278  Sum_probs=65.3

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----------------------------chhHH
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA   89 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (239)
                      .++++|++|| +.||+.|......|.+...+|... ++.++.|.+|.                            ..+++
T Consensus        55 ~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~-g~~vigiS~Ds~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~va  133 (219)
T 3tue_A           55 KGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNEL-NCEVLACSIDSEYAHLQWTLQDRKKGGLGTMAIPILADKTKNIA  133 (219)
T ss_dssp             TTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTT-TEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHH
T ss_pred             CCCEEEEEEecccCCCCCchhHhhHHHHHhhhccC-CcEEEEeeCCchhhHHHHhhhhHHhcCccccccccccCcccHHH
Confidence            4688999999 999999999999999999998744 58888887653                            23678


Q ss_pred             HHcCCC----C--CCeEEEEeCCCcCccc----cCCCCCHHHHHHHHHHh
Q 026412           90 EKYGVS----G--FPTLKFFPKGNKDGEE----YGGGRDLEDFVSFINEK  129 (239)
Q Consensus        90 ~~~~i~----~--~Pt~~~~~~g~~~~~~----~~g~~~~~~l~~~l~~~  129 (239)
                      +.||+-    +  +-.++++++.+.....    ..-.++.+++.+.|+..
T Consensus       134 ~~yGv~~~~~g~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EvLr~l~aL  183 (219)
T 3tue_A          134 RSYGVLEESQGVAYRGLFIIDPHGMLRQITVNDMPVGRSVEEVLRLLEAF  183 (219)
T ss_dssp             HHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HHcCCcccCCCeeEEEEEEECCCCeEEEEEEecCCCCCCHHHHHHHHHHh
Confidence            888873    2  2355666666553322    23357888888887654

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=97.07  E-value=0.0016  Score=51.52  Aligned_cols=53  Identities=11%  Similarity=0.204  Sum_probs=39.4

Q ss_pred             CcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc---hhHHHHcCCCCCCeEE
Q 026412           41 RGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY---KDLAEKYGVSGFPTLK  101 (239)
Q Consensus        41 k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~---~~l~~~~~i~~~Pt~~  101 (239)
                      ...++.|+.+||++|++....+++.        ++.+-.+|++.+   .++.+.++..++|+++
T Consensus       169 ~~~i~ly~~~~Cp~C~~a~~~L~~~--------~i~~~~~~i~~~~~~~~l~~~~g~~~vP~~~  224 (241)
T 1nm3_A          169 QESISIFTKPGCPFCAKAKQLLHDK--------GLSFEEIILGHDATIVSVRAVSGRTTVPQVF  224 (241)
T ss_dssp             CCCEEEEECSSCHHHHHHHHHHHHH--------TCCCEEEETTTTCCHHHHHHHTCCSSSCEEE
T ss_pred             cceEEEEECCCChHHHHHHHHHHHc--------CCceEEEECCCchHHHHHHHHhCCCCcCEEE
Confidence            4568889999999999998888753        233445565533   4577889999999974

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=97.04  E-value=0.0068  Score=53.68  Aligned_cols=101  Identities=13%  Similarity=0.103  Sum_probs=68.3

Q ss_pred             cEEcChhhHHHHh--cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEE
Q 026412           25 VVVLTEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF  102 (239)
Q Consensus        25 v~~l~~~~f~~~~--~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~  102 (239)
                      +..++.++++..+  ...+++++.|+...       .+...+++..+.....+.+..++ +.+..++++|||+++|++++
T Consensus       140 l~~it~~~l~~~l~~~~~~~vallF~~~~-------s~~~~~~~ldl~~~~~v~v~~v~-~~~~~l~~kfgV~~~Pslvl  211 (519)
T 3t58_A          140 LEPAKLNDIDGFFTRNKADYLALVFERED-------SYLGREVTLDLSQYHAVAVRRVL-NTESDLVNKFGVTDFPSCYL  211 (519)
T ss_dssp             CSBCCHHHHTTGGGSCCCSEEEEEEECTT-------CCHHHHHHHHTTTCTTEEEEEEE-TTCHHHHHHHTCCCSSEEEE
T ss_pred             cCcCCHHHHHHHhccCCCCeEEEEecCCc-------hHHHHHHHHHhhccCCeeEEEec-CchHHHHHHcCCCCCCeEEE
Confidence            4556778887777  44667888888764       22455666666656678776665 44578999999999999999


Q ss_pred             EeCCCcCccccCCCCCHHHHHHHHHHhhCCC
Q 026412          103 FPKGNKDGEEYGGGRDLEDFVSFINEKCGTS  133 (239)
Q Consensus       103 ~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~  133 (239)
                      +.++|+....-....+...+..++.+..+..
T Consensus       212 ~~~nGk~~~~~v~~~~r~~~~~~l~~l~~~~  242 (519)
T 3t58_A          212 LLRNGSVSRVPVLVESRSFYTSYLRGLPGLT  242 (519)
T ss_dssp             EETTSCEEECCCSSCSHHHHHHHHTTSTTCC
T ss_pred             EeCCCceeecccccccHHHHHHHHHHccCCC
Confidence            9887653222122234466777877655543

>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}

Probab=96.84  E-value=0.013  Score=45.24  Aligned_cols=44  Identities=20%  Similarity=0.277  Sum_probs=34.5

Q ss_pred             hHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412           87 DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus        87 ~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      ..+.++||.++||++++.+| +....+.|..+.+.+.++|++...
T Consensus       167 ~~a~~~gv~g~Pt~~i~~~G-~~~~~~~G~~~~~~l~~~l~~~~~  210 (216)
T 2in3_A          167 QRVAQWGISGFPALVVESGT-DRYLITTGYRPIEALRQLLDTWLQ  210 (216)
T ss_dssp             HHHHHTTCCSSSEEEEEETT-EEEEEESSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCcccceEEEEECC-EEEEeccCCCCHHHHHHHHHHHHH
Confidence            45668899999999888776 433357899999999999987653

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=96.55  E-value=0.0031  Score=47.87  Aligned_cols=41  Identities=12%  Similarity=0.205  Sum_probs=33.0

Q ss_pred             CCcEEEEEECCCChHHhhHhHHH-HHHHHHccCCCCeEEEEEeC
Q 026412           40 DRGALVEFYAPWCGHCKNLAPTY-EKVAAAFTLEDDVVVANLDA   82 (239)
Q Consensus        40 ~k~vlV~F~a~wC~~C~~~~~~~-~~~a~~~~~~~~v~~~~vd~   82 (239)
                      .++++|.||.++||+|..+.+.+ .++.+.+..  .+.+..+..
T Consensus        17 ~~~~~ief~d~~CP~C~~~~~~l~~~l~~~~~~--~v~~~~~~l   58 (195)
T 3c7m_A           17 ADKTLIKVFSYACPFCYKYDKAVTGPVSEKVKD--IVAFTPFHL   58 (195)
T ss_dssp             CTTEEEEEECTTCHHHHHHHHHTHHHHHHHTTT--TCEEEEEEC
T ss_pred             CCcEEEEEEeCcCcchhhCcHHHHHHHHHhCCC--ceEEEEEec
Confidence            56788999999999999999999 999888763  455555544

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=96.14  E-value=0.015  Score=44.02  Aligned_cols=56  Identities=13%  Similarity=0.281  Sum_probs=37.8

Q ss_pred             CCCcEEEEEE-CCCChHHh-hHhHHHHHHHHHc-cCCCCe-EEEEEeCcc---chhHHHHcCCC
Q 026412           39 QDRGALVEFY-APWCGHCK-NLAPTYEKVAAAF-TLEDDV-VVANLDADK---YKDLAEKYGVS   95 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~-~~~~~~~~~a~~~-~~~~~v-~~~~vd~~~---~~~l~~~~~i~   95 (239)
                      .++++++.|| +.|||.|. ...+.|.+...++ ... ++ .++.|.+|.   +...++++++.
T Consensus        42 ~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~-g~~~V~gvS~D~~~~~~~~~~~~~~~  104 (182)
T 1xiy_A           42 NNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKEN-NFDDIYCITNNDIYVLKSWFKSMDIK  104 (182)
T ss_dssp             TTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTS-CCSEEEEEESSCHHHHHHHHHHTTCC
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeCCCHHHHHHHHHHcCCC
Confidence            4566666665 78999999 8899999988888 644 45 366665553   33445555543

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A

Probab=95.77  E-value=0.023  Score=40.02  Aligned_cols=54  Identities=13%  Similarity=0.077  Sum_probs=33.4

Q ss_pred             EEEEEECCCChHHhhHh--HHHHHHHHHccCCCCeEEEEEeCccch----hHHHHc--------CCCCCCeE
Q 026412           43 ALVEFYAPWCGHCKNLA--PTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKY--------GVSGFPTL  100 (239)
Q Consensus        43 vlV~F~a~wC~~C~~~~--~~~~~~a~~~~~~~~v~~~~vd~~~~~----~l~~~~--------~i~~~Pt~  100 (239)
                      +++.|++++||+|+-..  .....+-+.    .+|.|-.+|++.++    ++.++.        |...+|.+
T Consensus         1 ~V~vYtt~~c~~c~~kk~c~~aK~lL~~----kgV~feEidI~~d~~~r~eM~~~~~~~~~~~~G~~tvPQI   68 (121)
T 1u6t_A            1 VIRVYIASSSGSTAIKKKQQDVLGFLEA----NKIGFEEKDIAANEENRKWMRENVPENSRPATGYPLPPQI   68 (121)
T ss_dssp             CEEEEECTTCSCHHHHHHHHHHHHHHHH----TTCCEEEEECTTCHHHHHHHHHHSCGGGSCSSSSCCSCEE
T ss_pred             CEEEEecCCCCCccchHHHHHHHHHHHH----CCCceEEEECCCCHHHHHHHHHhccccccccCCCcCCCEE
Confidence            47788999999994211  111222223    25778889987553    455566        66778865

>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}

Probab=95.63  E-value=0.026  Score=39.53  Aligned_cols=65  Identities=17%  Similarity=0.329  Sum_probs=39.2

Q ss_pred             hhhHHHHhcCCCcEEEEEE-----CCCChHHhhHhHHHHHHHHHccCCCCe-EEEEEeCccchh----HHHHcCCCCCCe
Q 026412           30 EDNFEKEVGQDRGALVEFY-----APWCGHCKNLAPTYEKVAAAFTLEDDV-VVANLDADKYKD----LAEKYGVSGFPT   99 (239)
Q Consensus        30 ~~~f~~~~~~~k~vlV~F~-----a~wC~~C~~~~~~~~~~a~~~~~~~~v-~~~~vd~~~~~~----l~~~~~i~~~Pt   99 (239)
                      .+..++.+++++ | |.|.     .|.||+|++....+...        .+ .+..+|++.+++    +.+.-+-+.+|.
T Consensus        10 ~e~i~~~i~~~~-V-vvF~Kgt~~~P~C~fc~~ak~lL~~~--------gv~~~~~~~v~~~~~~r~~l~~~sg~~TvPq   79 (118)
T 2wul_A           10 AEQLDALVKKDK-V-VVFLKGTPEQPQCGFSNAVVQILRLH--------GVRDYAAYNVLDDPELRQGIKDYSNWPTIPQ   79 (118)
T ss_dssp             HHHHHHHHHHSS-E-EEEESBCSSSBSSHHHHHHHHHHHHT--------TCCSCEEEETTSCHHHHHHHHHHHTCCSSCE
T ss_pred             HHHHHHHHhcCC-E-EEEEcCCCCCCCCHHHHHHHHHHHHh--------CCcCeEeecccCCHHHHHHHHHhccCCCCCe
Confidence            455677775544 3 3343     37899999987766532        12 255667765543    444557778888


Q ss_pred             EEEEeCC
Q 026412          100 LKFFPKG  106 (239)
Q Consensus       100 ~~~~~~g  106 (239)
                      +  |-+|
T Consensus        80 I--FI~g   84 (118)
T 2wul_A           80 V--YLNG   84 (118)
T ss_dssp             E--EETT
T ss_pred             E--eECC
Confidence            6  4444

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria}

Probab=95.25  E-value=0.0085  Score=50.27  Aligned_cols=64  Identities=16%  Similarity=0.250  Sum_probs=37.6

Q ss_pred             HHHHhcCCCcEEEEEECCCChHHhhHhH-HHHHHHHHccCCCCeEEEEEeC-ccc----hhHHHHcCCCCCCeEE
Q 026412           33 FEKEVGQDRGALVEFYAPWCGHCKNLAP-TYEKVAAAFTLEDDVVVANLDA-DKY----KDLAEKYGVSGFPTLK  101 (239)
Q Consensus        33 f~~~~~~~k~vlV~F~a~wC~~C~~~~~-~~~~~a~~~~~~~~v~~~~vd~-~~~----~~l~~~~~i~~~Pt~~  101 (239)
                      .++++...  -++.|+.+|||+|++... .+++..-.+   ..+.+..+|- +.+    ..+.+..|.+.+|.++
T Consensus       254 V~~lI~~~--~VvVYsk~~CPyC~~Ak~~LL~~~gV~y---~eidVlEld~~~~~~e~~~~L~~~tG~~TVPqVF  323 (362)
T 2jad_A          254 VKDLIAEN--EIFVASKTYCPYSHAALNTLFEKLKVPR---SKVLVLQLNDMKEGADIQAALYEINGQRTVPNIY  323 (362)
T ss_dssp             HHHHHHTC--SEEEEECTTCHHHHHHHHHHHTTTCCCT---TTEEEEEGGGSTTHHHHHHHHHHHHCCCSSCEEE
T ss_pred             HHHHhccC--CEEEEEcCCCcchHHHHHHHHHHcCCCc---ceEEEEEeccccCCHHHHHHHHHHHCCCCcCEEE
Confidence            34444443  366689999999999764 344332222   1344444432 222    3455677999999874

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=95.20  E-value=0.031  Score=42.28  Aligned_cols=42  Identities=19%  Similarity=0.131  Sum_probs=32.1

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEe
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD   81 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd   81 (239)
                      ..+.++|.|....||+|+++.+.+..+.+.+ ..+++.++.-+
T Consensus        13 ~a~vtiv~f~D~~Cp~C~~~~~~~~~~l~~~-~~g~v~~v~r~   54 (182)
T 3gn3_A           13 HGPRLFEVFLEPTCPFSVKAFFKLDDLLAQA-GEDNVTVRIRL   54 (182)
T ss_dssp             CCSEEEEEEECTTCHHHHHHHTTHHHHHHHH-CTTTEEEEEEE
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHHHh-CCCCEEEEEEE
Confidence            4567889999999999999999988877665 23456666544

>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}

Probab=95.13  E-value=0.016  Score=46.65  Aligned_cols=28  Identities=18%  Similarity=0.313  Sum_probs=24.5

Q ss_pred             CCcEEEEEECCCChHHhhHhHHHHHHHH
Q 026412           40 DRGALVEFYAPWCGHCKNLAPTYEKVAA   67 (239)
Q Consensus        40 ~k~vlV~F~a~wC~~C~~~~~~~~~~a~   67 (239)
                      ++.+++.|+.|.||+|+++.+.+.+..+
T Consensus       147 gk~~I~vFtDp~CPYCkkl~~~l~~~l~  174 (273)
T 3tdg_A          147 KDKILYIVSDPMCPHCQKELTKLRDHLK  174 (273)
T ss_dssp             TTCEEEEEECTTCHHHHHHHHTHHHHHH
T ss_pred             CCeEEEEEECcCChhHHHHHHHHHHHhh
Confidence            5689999999999999999999986544

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=94.48  E-value=0.049  Score=48.87  Aligned_cols=64  Identities=23%  Similarity=0.403  Sum_probs=41.3

Q ss_pred             hhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc-------hhHHHHcCCCCCCeEEEE
Q 026412           31 DNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-------KDLAEKYGVSGFPTLKFF  103 (239)
Q Consensus        31 ~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~-------~~l~~~~~i~~~Pt~~~~  103 (239)
                      +.+++.+..+  -++.|+.+|||+|++....+.+..        +.+..+|++..       ..+.+..+...+|.+  |
T Consensus         9 ~~v~~~i~~~--~v~vy~~~~Cp~C~~~k~~L~~~~--------i~~~~~dv~~~~~~~~~~~~l~~~~g~~tvP~v--~   76 (598)
T 2x8g_A            9 QWLRKTVDSA--AVILFSKTTCPYCKKVKDVLAEAK--------IKHATIELDQLSNGSAIQKCLASFSKIETVPQM--F   76 (598)
T ss_dssp             HHHHHHHHHC--SEEEEECTTCHHHHHHHHHHHHTT--------CCCEEEEGGGSTTHHHHHHHTHHHHSCCCSCEE--E
T ss_pred             HHHHHHhccC--CEEEEECCCChhHHHHHHHHHHCC--------CCcEEEEcccCcchHHHHHHHHHHhCCceeCEE--E
Confidence            4566666443  377799999999999988877542        22334554421       234445788899987  4


Q ss_pred             eCC
Q 026412          104 PKG  106 (239)
Q Consensus       104 ~~g  106 (239)
                      .+|
T Consensus        77 i~g   79 (598)
T 2x8g_A           77 VRG   79 (598)
T ss_dssp             ETT
T ss_pred             ECC
Confidence            444

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}

Probab=94.36  E-value=0.052  Score=40.64  Aligned_cols=56  Identities=13%  Similarity=0.174  Sum_probs=41.6

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeE-EEEEeCcc---chhHHHHcCCC
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVV-VANLDADK---YKDLAEKYGVS   95 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~-~~~vd~~~---~~~l~~~~~i~   95 (239)
                      .++++++.|| ..|||.|....+.|.+...++... ++. ++.|.+|.   ....++++++.
T Consensus        41 ~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~-gv~~VigIS~D~~~~~~~w~~~~~~~  101 (171)
T 2xhf_A           41 RGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEE-GYHTIACIAVNDPFVMAAWGKTVDPE  101 (171)
T ss_dssp             TTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHT-TCCEEEEEESSCHHHHHHHHHHHCTT
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC-CCCEEEEEeCCCHHHHHHHHHhcCCC
Confidence            4567777777 689999999999999988888643 463 77777763   45677777763

>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}

Probab=94.15  E-value=0.18  Score=35.24  Aligned_cols=32  Identities=13%  Similarity=0.019  Sum_probs=23.2

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD   83 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~   83 (239)
                      ++.|+.|+|+.|++....+++.        ++.+-.+|+.
T Consensus         7 i~iY~~~~C~~C~ka~~~L~~~--------gi~y~~~di~   38 (120)
T 2kok_A            7 VTIYGIKNCDTMKKARIWLEDH--------GIDYTFHDYK   38 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH--------TCCEEEEEHH
T ss_pred             EEEEECCCChHHHHHHHHHHHc--------CCcEEEEeee
Confidence            5678899999999988777653        3445556664

>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A

Probab=91.90  E-value=0.17  Score=35.92  Aligned_cols=78  Identities=14%  Similarity=0.204  Sum_probs=43.0

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc----hhHHHHcCCCCCCeEEEEeCCCcCcccc---CCC
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY----KDLAEKYGVSGFPTLKFFPKGNKDGEEY---GGG  116 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~Pt~~~~~~g~~~~~~~---~g~  116 (239)
                      ++.|+.|||++|++....+++.        ++.+-.+|++.+    .++..-++-.+.|.--+++..+......   ...
T Consensus         3 i~lY~~~~C~~C~ka~~~L~~~--------gi~y~~~di~~~~~~~~el~~~l~~~~~~~~~l~n~~~~~~k~l~~~~~~   74 (132)
T 1z3e_A            3 VTLYTSPSCTSCRKARAWLEEH--------EIPFVERNIFSEPLSIDEIKQILRMTEDGTDEIISTRSKVFQKLNVNVES   74 (132)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCEEEEETTTSCCCHHHHHHHHHTCSSCGGGTBCTTSHHHHHHCCCGGG
T ss_pred             EEEEeCCCChHHHHHHHHHHHc--------CCceEEEEccCCCccHHHHHHHHHHcCCCHHHhhcCCchHHHhcCccccc
Confidence            5678899999999988777642        344556666543    3344433333333333454432211111   112


Q ss_pred             CCHHHHHHHHHHh
Q 026412          117 RDLEDFVSFINEK  129 (239)
Q Consensus       117 ~~~~~l~~~l~~~  129 (239)
                      .+.+++.+.+.++
T Consensus        75 ls~~~~~~~l~~~   87 (132)
T 1z3e_A           75 MPLQDLYRLINEH   87 (132)
T ss_dssp             SBHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHhC
Confidence            4677777777654

>1t4y_A Adaptive-response sensory-kinase SASA; alpha/beta protein, thioredoxin fold, transferase; NMR {Synechococcus elongatus} SCOP: c.47.1.15 PDB: 1t4z_A

Probab=91.69  E-value=2.1  Score=28.89  Aligned_cols=86  Identities=12%  Similarity=0.142  Sum_probs=68.1

Q ss_pred             EEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHH
Q 026412           43 ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDF  122 (239)
Q Consensus        43 vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l  122 (239)
                      .-..|.+..-+.+++....+.++-+.+.....+.+--||+.+++.+++.++|-.+||++=..+.  ...++.|.--...+
T Consensus        13 L~lLyvag~tp~S~~ai~nL~~i~e~~l~~~~y~LeVIDv~eqPeLAE~~~IvATPTLIK~~P~--P~rriiGd~i~~ql   90 (105)
T 1t4y_A           13 LLLQLFVDTRPLSQHIVQRVKNILAAVEATVPISLQVINVADQPQLVEYYRLVVTPALVKIGPG--SRQVLSGIDLTDQL   90 (105)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHHHHHCCSSCEEEEEEETTTCHHHHHHTTCCSSSEEEEEESS--SCEEEESSCHHHHH
T ss_pred             hheeeEeCCCccHHHHHHHHHHHHHHhccCCceEEEEeecccCHHHHhHcCeeeccHhhccCCC--CceEEeChHHHHHH
Confidence            4446777788888888888888777665456788889999999999999999999999765543  45677888788888


Q ss_pred             HHHHHHhh
Q 026412          123 VSFINEKC  130 (239)
Q Consensus       123 ~~~l~~~~  130 (239)
                      ..|.-+--
T Consensus        91 ~~wwprWq   98 (105)
T 1t4y_A           91 ANQLPQWL   98 (105)
T ss_dssp             HHHHHHHH
T ss_pred             HHHhHHHH
Confidence            88886654

>2g2q_A Glutaredoxin-2; thioredoxin-fold, oxidoreductase, poxvirus; 2.50A {Vaccinia virus}

Probab=89.83  E-value=0.26  Score=33.96  Aligned_cols=36  Identities=22%  Similarity=0.599  Sum_probs=28.5

Q ss_pred             CcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeC
Q 026412           41 RGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA   82 (239)
Q Consensus        41 k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~   82 (239)
                      |.+++.|..|.|+-|+-....+.++..      +..+.+||+
T Consensus         2 K~tLILfGKP~C~vCe~~s~~l~~led------eY~ilrVNI   37 (124)
T 2g2q_A            2 KNVLIIFGKPYCSICENVSDAVEELKS------EYDILHVDI   37 (124)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHHHTTTT------TEEEEEEEC
T ss_pred             CceEEEeCCCccHHHHHHHHHHHHhhc------cccEEEEEe
Confidence            578999999999999999888755444      455777775

>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12

Probab=89.80  E-value=0.26  Score=34.00  Aligned_cols=33  Identities=15%  Similarity=0.083  Sum_probs=23.7

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK   84 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~   84 (239)
                      ++.|+.|+|+.|++....+++-        ++.+-.+|+.+
T Consensus         2 i~iY~~~~C~~C~kak~~L~~~--------gi~~~~~di~~   34 (114)
T 1rw1_A            2 YVLYGIKACDTMKKARTWLDEH--------KVAYDFHDYKA   34 (114)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHT--------TCCEEEEEHHH
T ss_pred             EEEEECCCChHHHHHHHHHHHC--------CCceEEEeecC
Confidence            4678899999999987776642        35566666653

>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12

Probab=89.56  E-value=0.38  Score=33.50  Aligned_cols=78  Identities=14%  Similarity=0.237  Sum_probs=43.0

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc----hhHHHHcCCCCCCeEEEEeCCCcCcccc---CCC
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY----KDLAEKYGVSGFPTLKFFPKGNKDGEEY---GGG  116 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~Pt~~~~~~g~~~~~~~---~g~  116 (239)
                      +..|+.|+|+.|++....+++-        ++.+-.+|+.++    .++..-++-.+.|.--+++..+......   ...
T Consensus         2 i~iY~~~~C~~c~ka~~~L~~~--------gi~~~~~di~~~~~~~~el~~~l~~~~~~~~~l~n~~~~~~k~l~~~~~~   73 (120)
T 3l78_A            2 VTLFLSPSCTSCRKARAWLNRH--------DVVFQEHNIMTSPLSRDELLKILSYTENGTEDIISTRSKVFQKLDIDVDE   73 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHT--------TCCEEEEETTTSCCCHHHHHHHHHHCSSTHHHHBCTTCHHHHHTTCCGGG
T ss_pred             EEEEeCCCCHHHHHHHHHHHHc--------CCCeEEEecccCCCcHHHHHHHHhhcCCCHHHhhcCCcHHHHHcCCCccc
Confidence            5678899999999987766532        355666666533    2333333333444334554443211111   113


Q ss_pred             CCHHHHHHHHHHh
Q 026412          117 RDLEDFVSFINEK  129 (239)
Q Consensus       117 ~~~~~l~~~l~~~  129 (239)
                      .+.+++.+.+.++
T Consensus        74 ls~~~~~~~m~~~   86 (120)
T 3l78_A           74 LSVSELINLISKN   86 (120)
T ss_dssp             CCHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHhC
Confidence            4677777777654

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=88.79  E-value=1.6  Score=38.37  Aligned_cols=80  Identities=13%  Similarity=0.119  Sum_probs=59.8

Q ss_pred             CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCH
Q 026412           40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDL  119 (239)
Q Consensus        40 ~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~  119 (239)
                      .+++.+.++...|+.|.++...++++++.-   +.+.+...|  .. .       ...|++.+.++|.....+|.|-+.-
T Consensus        18 ~~~v~l~~~~~~~~~~~~~~~~~~~~~~~s---~~i~~~~~~--~~-~-------~~~p~~~~~~~~~~~~i~f~g~p~g   84 (521)
T 1hyu_A           18 TKPVELIATLDDSAKSAEIKELLAEIAELS---DKVTFKEDN--TL-P-------VRKPSFLITNPGSQQGPRFAGSPLG   84 (521)
T ss_dssp             CSCEEEEEECCSSHHHHHHHHHHHHHHTTC---TTEEEEECT--TS-S-------SCSSEEEEECTTCCCSCEEESCCCG
T ss_pred             CCCEEEEEEeCCCcchHHHHHHHHHHHHhC---CceEEEEcC--Cc-c-------cCCCEEEEecCCCcceEEEeccCcc
Confidence            567878888888999999999999987763   356653321  11 0       4689999987775667899999888


Q ss_pred             HHHHHHHHHhhCC
Q 026412          120 EDFVSFINEKCGT  132 (239)
Q Consensus       120 ~~l~~~l~~~~~~  132 (239)
                      ++|..|+...+..
T Consensus        85 ~e~~s~~~~l~~~   97 (521)
T 1hyu_A           85 HEFTSLVLALLWT   97 (521)
T ss_dssp             GGHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhh
Confidence            8888888776543

>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0

Probab=87.72  E-value=0.77  Score=31.98  Aligned_cols=34  Identities=18%  Similarity=0.357  Sum_probs=23.5

Q ss_pred             EEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc
Q 026412           43 ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK   84 (239)
Q Consensus        43 vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~   84 (239)
                      .+..|+.|+|+.|++....+++-        ++.+-.+|+.+
T Consensus         4 Mi~iY~~~~C~~c~ka~~~L~~~--------gi~~~~~di~~   37 (120)
T 3fz4_A            4 MLTFYEYPKCSTCRRAKAELDDL--------AWDYDAIDIKK   37 (120)
T ss_dssp             SEEEEECSSCHHHHHHHHHHHHH--------TCCEEEEETTT
T ss_pred             eEEEEeCCCChHHHHHHHHHHHc--------CCceEEEEecc
Confidence            35667899999999987766632        34455666643

>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A

Probab=87.33  E-value=0.17  Score=36.51  Aligned_cols=79  Identities=10%  Similarity=0.094  Sum_probs=47.1

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc----hhHHHHcCCCCCCeEEEEeCCCcCcccc---CCC
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY----KDLAEKYGVSGFPTLKFFPKGNKDGEEY---GGG  116 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~Pt~~~~~~g~~~~~~~---~g~  116 (239)
                      +..|+.|+|+.|++....+++-        ++.+-.+|+.+.    .++.+-++-.++|.--+++..+......   ...
T Consensus         4 itiY~~p~C~~crkak~~L~~~--------gi~~~~idi~~~~~~~~eL~~~~~~~g~p~~~l~n~~~~~yk~l~l~~~~   75 (141)
T 1s3c_A            4 ITIYHNPASGTSRNTLEMIRNS--------GTEPTIILYLENPPSRDELVKLIADMGISVRALLRKNVEPYEQLGLAEDK   75 (141)
T ss_dssp             CEEECCTTCHHHHHHHHHHHHT--------TCCCEEECTTTSCCCHHHHHHHHHHHTSCHHHHBCSSSHHHHHTTTTSSC
T ss_pred             EEEEECCCChHHHHHHHHHHHc--------CCCEEEEECCCCCccHHHHHHHhcccCCCHHHhccCCchhHHhcCCcccc
Confidence            4567899999999987666541        355666776542    3344444444567555665543321111   124


Q ss_pred             CCHHHHHHHHHHhh
Q 026412          117 RDLEDFVSFINEKC  130 (239)
Q Consensus       117 ~~~~~l~~~l~~~~  130 (239)
                      .+.+++.+.+.++-
T Consensus        76 ls~~~~~~lm~~~P   89 (141)
T 1s3c_A           76 FTDDQLIDFMLQHP   89 (141)
T ss_dssp             CCHHHHHHHHHHSG
T ss_pred             CCHHHHHHHHHhCc
Confidence            68888888887653

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=87.14  E-value=0.71  Score=34.61  Aligned_cols=37  Identities=24%  Similarity=0.326  Sum_probs=28.3

Q ss_pred             hHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHH
Q 026412           87 DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI  126 (239)
Q Consensus        87 ~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l  126 (239)
                      ..+.++||+++||+++  +| +......|..+.+++.++|
T Consensus       145 ~~a~~~GV~gtPtf~i--ng-~~~~~~s~~~~~e~w~~~l  181 (182)
T 3gn3_A          145 KYARQNGIHVSPTFMI--NG-LVQPGMSSGDPVSKWVSDI  181 (182)
T ss_dssp             HHHHHHTCCSSSEEEE--TT-EECTTCCTTSCHHHHHHHH
T ss_pred             HHHHHCCCCccCEEEE--CC-EEccCCCCCCCHHHHHHHh
Confidence            5678899999999865  44 3333467889999998886

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=85.45  E-value=0.48  Score=35.39  Aligned_cols=42  Identities=17%  Similarity=0.182  Sum_probs=30.5

Q ss_pred             hhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412           86 KDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus        86 ~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      ...+.++||.++||+++  +| +......|..+.+.+.+.|+..+
T Consensus       152 ~~~a~~~gv~gtPt~~i--ng-~~~~~~~g~~~~~~l~~~i~~~l  193 (195)
T 3c7m_A          152 KASYDVAKIQGVPAYVV--NG-KYLIYTKSIKSIDAMADLIRELA  193 (195)
T ss_dssp             GGHHHHHHHHCSSEEEE--TT-TEEECGGGCCCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCccCEEEE--CC-EEEeccCCCCCHHHHHHHHHHHH
Confidence            45678899999999755  44 32223347789999999998765

>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0

Probab=82.29  E-value=0.88  Score=31.64  Aligned_cols=20  Identities=15%  Similarity=0.263  Sum_probs=16.5

Q ss_pred             EEEEECCCChHHhhHhHHHH
Q 026412           44 LVEFYAPWCGHCKNLAPTYE   63 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~   63 (239)
                      +..|+.|+|+.|++....++
T Consensus         6 i~iY~~p~C~~c~ka~~~L~   25 (120)
T 3gkx_A            6 TLFLQYPACSTCQKAKKWLI   25 (120)
T ss_dssp             CEEEECTTCHHHHHHHHHHH
T ss_pred             EEEEECCCChHHHHHHHHHH
Confidence            56788999999999876665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	239
d2c0ga1	106	a.71.1.1 (A:1146-1251) Windbeutel, C-terminal doma	3e-30
d1g7da_	106	a.71.1.1 (A:) Endoplasmic reticulum protein ERP29,	6e-30
d2c0ga2	122	c.47.1.7 (A:1024-1145) Windbeutel, N-terminal doma	9e-29
d1g7ea_	122	c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,	3e-25
d1meka_	120	c.47.1.2 (A:) Protein disulfide isomerase, PDI {Hu	9e-24
d1a8ya1	124	c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctola	5e-21
d2trxa_	108	c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId	9e-20
d2djja1	116	c.47.1.2 (A:6-121) Protein disulfide isomerase, PD	2e-19
d2b5ea1	140	c.47.1.2 (A:365-504) Protein disulfide isomerase,	1e-18
d1thxa_	108	c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120	2e-18
d2es7a1	119	c.47.1.20 (A:7-125) Hydrogenase-1 operon protein H	2e-18
d2b5ea4	119	c.47.1.2 (A:23-141) Protein disulfide isomerase, P	3e-18
d1nw2a_	105	c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidoc	4e-18
d2hfda1	132	c.47.1.20 (A:1-132) Hydrogenase-1 operon protein H	2e-17
d1nhoa_	85	c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-lik	2e-17
d1dbya_	107	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	8e-17
d1qgva_	137	c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human	2e-16
d1f9ma_	112	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	6e-14
d1gh2a_	107	c.47.1.1 (A:) Thioredoxin-like protein, N-terminal	7e-13
d1fb6a_	104	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	8e-13
d1a8la2	107	c.47.1.2 (A:120-226) Protein disulfide isomerase,	6e-12
d2ifqa1	105	c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapien	1e-11
d1syra_	103	c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plas	2e-11
d1ti3a_	113	c.47.1.1 (A:) Thioredoxin {European aspen (Populus	2e-11
d1zmaa1	115	c.47.1.1 (A:1-115) Bacterocin transport accessory	4e-11
d1fo5a_	85	c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-lik	8e-11
d1ep7a_	112	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	3e-10
d2fwha1	117	c.47.1.1 (A:428-544) Thiol:disulfide interchange p	4e-10
d1woua_	119	c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxi	6e-10
d1r26a_	113	c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [Tax	2e-09
d1hyua4	96	c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase	4e-09
d1xfla_	114	c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsi	6e-09
d1sena_	135	c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19	9e-09
d1wjka_	100	c.47.1.1 (A:) Thioredoxin-like structure containin	2e-08
d1xwaa_	111	c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila m	2e-08
d2trcp_	217	c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [	1e-07
d2fy6a1	143	c.47.1.10 (A:33-175) Peptide methionine sulfoxide	7e-06
d2b5xa1	143	c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase	3e-05
d1z6na1	166	c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Ps	2e-04

>d2c0ga1 a.71.1.1 (A:1146-1251) Windbeutel, C-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 106

class: All alpha proteins
fold: ERP29 C domain-like
superfamily: ERP29 C domain-like
family: ERP29 C domain-like
domain: Windbeutel, C-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  106 bits (266), Expect = 3e-30
 Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 1/96 (1%)

Query: 144 AGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEG-STARHGKIYLKVAKNYMDKGS 202
            G +   + ++K +      E+  +  K++   E L      ++ + YL   +   + G 
Sbjct: 2   DGCIKEFNEVLKNYANIPDAEQLKLIEKLQAKQEQLTDPEQQQNARAYLIYMRKIHEVGY 61

Query: 203 DYAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 238
           D+ ++E  RL R+    ++ AK +E + K NIL  F
Sbjct: 62  DFLEEETKRLLRLKAGKVTEAKKEELLRKLNILEVF 97

>d1g7da_ a.71.1.1 (A:) Endoplasmic reticulum protein ERP29, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 106

class: All alpha proteins
fold: ERP29 C domain-like
superfamily: ERP29 C domain-like
family: ERP29 C domain-like
domain: Endoplasmic reticulum protein ERP29, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  105 bits (264), Expect = 6e-30
 Identities = 25/95 (26%), Positives = 52/95 (54%), Gaps = 1/95 (1%)

Query: 145 GIVASLDALVKEFVAASGDE-KKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSD 203
           G + + DAL  +F+ AS  E ++A+  + + G+  ++ +  +    YLK+    +D+G D
Sbjct: 2   GCLPAYDALAGQFIEASSREARQAILKQGQDGLSGVKETDKKWASQYLKIMGKILDQGED 61

Query: 204 YAKKEIDRLQRMLDKSISAAKADEFVLKKNILSTF 238
           +   E+ R+ ++++  +S  K +E     NIL+ F
Sbjct: 62  FPASELARISKLIENKMSEGKKEELQRSLNILTAF 96

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  103 bits (257), Expect = 9e-29
 Identities = 21/117 (17%), Positives = 43/117 (36%), Gaps = 12/117 (10%)

Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFT-LEDDVVVANLDAD 83
            V L E +FEK V +   ++V+F        K     +   + +      D+++A +   
Sbjct: 4   CVDLDELSFEKTVERFPYSVVKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATVGVK 61

Query: 84  KY-----KDLAEKYG--VSGFPTLKFFPKGNKDG--EEYGGGRDLEDFVSFINEKCG 131
            Y     K L ++Y      FP++  F     +           L++  +F++    
Sbjct: 62  DYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTP 118

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 94.3 bits (234), Expect = 3e-25
 Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 10/115 (8%)

Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKN-----LAPTYEKVAAAFTLEDDVVV 77
              + L    F K + + +  LV+F   +    K      LA       +   L  +V +
Sbjct: 4   KGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQDEFKRLAENSAS--SDDLLVAEVGI 61

Query: 78  ANLDADKYKDLAEKY--GVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINEK 129
           ++       +L+EKY      +P    F  G+  +   Y G   +     ++  +
Sbjct: 62  SDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLKGQ 116

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.3 bits (223), Expect = 9e-24
 Identities = 49/113 (43%), Positives = 73/113 (64%), Gaps = 2/113 (1%)

Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLED-DVVVANLD 81
           D V+VL + NF + +   +  LVEFYAPWCGHCK LAP Y K A     E  ++ +A +D
Sbjct: 7   DHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVD 66

Query: 82  ADKYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINEKCGTS 133
           A +  DLA++YGV G+PT+KFF  G+    +EY  GR+ +D V+++ ++ G +
Sbjct: 67  ATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGPA 119

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 82.9 bits (204), Expect = 5e-21
 Identities = 18/112 (16%), Positives = 41/112 (36%), Gaps = 9/112 (8%)

Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTL------EDDVV 76
           D V+ +   N++    +     + ++ P           +E       L      +  V 
Sbjct: 11  DRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKA-SQRQFEMEELILELAAQVLEDKGVG 69

Query: 77  VANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 128
              +D++K   +A+K G++   ++  F +      EY G    +  V F+ +
Sbjct: 70  FGLVDSEKDAAVAKKLGLTEEDSIYVFKEDEV--IEYDGEFSADTLVEFLLD 119

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

 Score = 79.4 bits (195), Expect = 9e-20
 Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 4/108 (3%)

Query: 22  ADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           +D ++ LT+D+F+ +V + D   LV+F+A WCG CK +AP  +++A  +     + VA L
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKL 58

Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 128
           + D+    A KYG+ G PTL  F  G        G         F++ 
Sbjct: 59  NIDQNPGTAPKYGIRGIPTLLLFKNGEVA-ATKVGALSKGQLKEFLDA 105

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Length = 116

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

 Score = 78.3 bits (192), Expect = 2e-19
 Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 2/107 (1%)

Query: 24  DVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 82
            V V+   N+ + V    +  L+EFYAPWCGHCK LAP YE++ A +   +      +  
Sbjct: 3   PVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAK 62

Query: 83  DKYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINE 128
                      + GFPT+K +P G K     Y G R +ED + FI E
Sbjct: 63  VDATANDVPDEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAE 109

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.2 bits (189), Expect = 1e-18
 Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 3/117 (2%)

Query: 23  DDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD 81
             V  L   N ++ V    +  LV +YAPWCGHCK LAPTY+++A  +      V+    
Sbjct: 12  SSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIA-K 70

Query: 82  ADKYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINEKCGTSRDGK 137
            D  ++      + G+PT+  +P G K +   Y G R L+    FI E      DGK
Sbjct: 71  LDHTENDVRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHFDVDGK 127

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

 Score = 75.6 bits (185), Expect = 2e-18
 Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 4/108 (3%)

Query: 22  ADDVVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           +  V+ +T+  FE EV + ++  LV F+A WCG C+ ++P     A  +   D + V  L
Sbjct: 1   SKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTY--SDRLKVVKL 58

Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 128
           + D      +KY V G P L+   KG +  +   G    +  +SF++ 
Sbjct: 59  EIDPNPTTVKKYKVEGVPALRLV-KGEQILDSTEGVISKDKLLSFLDT 105

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

 Score = 75.8 bits (186), Expect = 2e-18
 Identities = 13/111 (11%), Positives = 34/111 (30%), Gaps = 4/111 (3%)

Query: 20  ALADDVVVLTEDNFEKEVGQDRGALV--EFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVV 77
            L      +     +  + +    ++             +      ++   F  + D  V
Sbjct: 8   LLTRGWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFP-QFDWQV 66

Query: 78  ANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 128
           A  D ++ + + +++ V  FP    F  G   G    G     + ++ +  
Sbjct: 67  AVADLEQSEAIGDRFNVRRFPATLVFTDGKLRG-ALSGIHPWAELLTLMRS 116

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.7 bits (185), Expect = 3e-18
 Identities = 39/110 (35%), Positives = 60/110 (54%), Gaps = 2/110 (1%)

Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA 82
             VV L  D+F + +      L EF+APWCGHCKN+AP Y K A     E ++ +A +D 
Sbjct: 10  SAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLV-EKNITLAQIDC 68

Query: 83  DKYKDLAEKYGVSGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINEKCG 131
            + +DL  ++ + GFP+LK F   +  +  +Y G R  E  V F+ ++  
Sbjct: 69  TENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQ 118

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

 Score = 74.8 bits (183), Expect = 4e-18
 Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 3/104 (2%)

Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
            + LT+ NF++ +  D+  LV+F+A WCG C+ +AP  E+   A    D V VA L+ D+
Sbjct: 2   TMTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEF--AEAHADKVTVAKLNVDE 59

Query: 85  YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 128
             +   ++G+   PTL  F  G    ++  G +  E   + + +
Sbjct: 60  NPETTSQFGIMSIPTLILFKGGEPV-KQLIGYQPKEQLEAQLAD 102

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

 Score = 73.9 bits (181), Expect = 2e-17
 Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 4/112 (3%)

Query: 19  SALADDVVVLTEDNFEKEVGQDRGALV--EFYAPWCGHCKNLAPTYEKVAAAFTLEDDVV 76
             LA     ++E   +  + Q    +V             +      ++   F  +    
Sbjct: 13  RMLARGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFP-DYTWQ 71

Query: 77  VANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 128
           VA  D ++ + + +++GV  FP    F  G        G     + ++ +  
Sbjct: 72  VAIADLEQSEAIGDRFGVFRFPATLVF-TGGNYRGVLNGIHPWAELINLMRG 122

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 72.4 bits (177), Expect = 2e-17
 Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 8/87 (9%)

Query: 44  LVE-FYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKF 102
            +E F +P C +C       ++    F  + DV   ++  D+    A +YG+   P +  
Sbjct: 4   NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDRE--KAIEYGLMAVPAIAI 61

Query: 103 FPKGNKDGEEYGGGRDLEDFVSFINEK 129
                     + G    E+    IN++
Sbjct: 62  NGVV-----RFVGAPSREELFEAINDE 83

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 71.5 bits (174), Expect = 8e-17
 Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 4/105 (3%)

Query: 25  VVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
              + +D F+  V +     LV+F+APWCG C+ +AP  +++A  +  +   V   L+ D
Sbjct: 3   AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCV--KLNTD 60

Query: 84  KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 128
           +  ++A +YG+   PT+  F  G K  E   G       V  + +
Sbjct: 61  ESPNVASEYGIRSIPTIMVFKGGKKC-ETIIGAVPKATIVQTVEK 104

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.7 bits (175), Expect = 2e-16
 Identities = 22/125 (17%), Positives = 46/125 (36%), Gaps = 13/125 (10%)

Query: 29  TEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK 86
                ++ +   +DR  ++ F   W   C  +      +A    +++  V+  +D  +  
Sbjct: 9   NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAE--KVKNFAVIYLVDITEVP 66

Query: 87  DLAEKYGVSGFPTLKFFPKGNKDGEEYGGG---------RDLEDFVSFINEKCGTSRDGK 137
           D  + Y +    T+ FF +      + G G          D ++ V  I      +R G+
Sbjct: 67  DFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGARKGR 126

Query: 138 GQLTS 142
           G + S
Sbjct: 127 GLVVS 131

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

 Score = 64.0 bits (155), Expect = 6e-14
 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 10/115 (8%)

Query: 18  VSALADDVVVLTEDNFEKEVGQ--DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDV 75
           + A+   V  + +D F   V    D+  +++ +  WCG CK +AP YEK+  A    D +
Sbjct: 1   MEAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKL--AEEYLDVI 58

Query: 76  VVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGG--GRDLEDFVSFINE 128
            +      + K LA++ G+   PT K      K+    G   G   +  +  I  
Sbjct: 59  FLKLDCNQENKTLAKELGIRVVPTFKIL----KENSVVGEVTGAKYDKLLEAIQA 109

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.9 bits (147), Expect = 7e-13
 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 11/107 (10%)

Query: 26  VVLTEDNFEKEVGQ--DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
            V ++ +F+ E+     R A+V+F    CG C  +AP +  +          V   +D  
Sbjct: 5   PVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSM---SNKYPQAVFLEVDVH 61

Query: 84  KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGG--GRDLEDFVSFINE 128
           + +  A    +S  PT +FF    ++        G D       I +
Sbjct: 62  QCQGTAATNNISATPTFQFF----RNKVRIDQYQGADAVGLEEKIKQ 104

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} Length = 104

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

 Score = 60.7 bits (146), Expect = 8e-13
 Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 4/105 (3%)

Query: 25  VVVLTEDNFEKEVGQ-DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
           V  + + ++++ V + +   +V+F+APWCG CK +AP  +++A  ++    + V  L+ D
Sbjct: 1   VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYS--GKIAVYKLNTD 58

Query: 84  KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 128
           +   +A +Y +   PT+ FF  G +  E   G          I +
Sbjct: 59  EAPGIATQYNIRSIPTVLFFKNGERK-ESIIGAVPKSTLTDSIEK 102

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 58.4 bits (140), Expect = 6e-12
 Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 4/104 (3%)

Query: 28  LTEDNFEKEVGQDRGALVE-FYAPWCGHCKNLAPTYEKV--AAAFTLEDDVVVANLDADK 84
           L ++  +     D+   +  F  P C +C        K         +  ++   ++A +
Sbjct: 2   LMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE 61

Query: 85  YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 128
           Y + A++Y V   P +     G +D  E+ G    + F+  +  
Sbjct: 62  YPEWADQYNVMAVPKIVIQVNG-EDRVEFEGAYPEKMFLEKLLS 104

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (138), Expect = 1e-11
 Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 7/104 (6%)

Query: 27  VLTEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
           + ++  F++ +    D+  +V+F A WCG CK + P +  ++  +    +V+   +D D 
Sbjct: 5   IESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKY---SNVIFLEVDVDD 61

Query: 85  YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 128
            +D+A +  V   PT +FF KG K GE    G + E   + INE
Sbjct: 62  CQDVASECEVKCMPTFQFFKKGQKVGEF--SGANKEKLEATINE 103

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 103

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 57.1 bits (137), Expect = 2e-11
 Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 9/105 (8%)

Query: 26  VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY 85
           +V ++  F+  + Q+   +V+F+A WCG CK +AP YE+ +  +     +V   +D D+ 
Sbjct: 4   IVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTY---TKMVFIKVDVDEV 60

Query: 86  KDLAEKYGVSGFPTLKFFPKGNKDGEEYGG--GRDLEDFVSFINE 128
            ++ EK  ++  PT K +    K+G       G +       I +
Sbjct: 61  SEVTEKENITSMPTFKVY----KNGSSVDTLLGANDSALKQLIEK 101

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

 Score = 57.1 bits (137), Expect = 2e-11
 Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 29  TEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDL 88
            +++FEK  G  +  +V+F A WC  CK +AP + ++A  F    +V    +D D+ K +
Sbjct: 15  WKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKF---PNVTFLKVDVDELKAV 71

Query: 89  AEKYGVSGFPTLKFFPKGNKDGEEYG--GGRDLEDFVSFINE 128
           AE++ V   PT  F     KDG+      G D +   + + +
Sbjct: 72  AEEWNVEAMPTFIFL----KDGKLVDKTVGADKDGLPTLVAK 109

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} Length = 115

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 56.5 bits (135), Expect = 4e-11
 Identities = 15/105 (14%), Positives = 30/105 (28%), Gaps = 3/105 (2%)

Query: 24  DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAF--TLEDDVVVANLD 81
           D+ V T    ++ + +   A        C +C+  A T   V A     +          
Sbjct: 10  DLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQ 69

Query: 82  ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI 126
            +  +    +YG+   P       G +           ++   F 
Sbjct: 70  LNDLQAFRSRYGIPTVPGFVHITDG-QINVRCDSSMSAQEIKDFA 113

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 54.9 bits (131), Expect = 8e-11
 Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 7/86 (8%)

Query: 44  LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 103
           +  F +P C HC       E+VA       +V   N+  +  K    +YG+   PT+   
Sbjct: 6   IELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKA--MEYGIMAVPTIVIN 63

Query: 104 PKGNKDGEEYGGGRDLEDFVSFINEK 129
                   E+ G    E  V  I ++
Sbjct: 64  GDV-----EFIGAPTKEALVEAIKKR 84

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 54.1 bits (129), Expect = 3e-10
 Identities = 24/110 (21%), Positives = 51/110 (46%), Gaps = 12/110 (10%)

Query: 25  VVVLTEDNFEKEVGQ----DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           +V+ ++  ++ ++ +     +  +V+F A WCG CK +AP +E +  +      V+   +
Sbjct: 5   IVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETL--SNDYAGKVIFLKV 62

Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG--GGRDLEDFVSFINE 128
           D D    +AE  G++  PT   +    KDG +     G   +   + + +
Sbjct: 63  DVDAVAAVAEAAGITAMPTFHVY----KDGVKADDLVGASQDKLKALVAK 108

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} Length = 117

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

 Score = 53.8 bits (128), Expect = 4e-10
 Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 8/111 (7%)

Query: 27  VLTEDNFEKEVGQDRG--ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVAN----L 80
           + T D   + + + +G   +++ YA WC  CK                 D V+       
Sbjct: 7   IKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTA 66

Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG--GGRDLEDFVSFINEK 129
           +  +   L +   V G PT+ FF    ++  +    G  D E F + + ++
Sbjct: 67  NDAQDVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDR 117

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (127), Expect = 6e-10
 Identities = 21/119 (17%), Positives = 34/119 (28%), Gaps = 19/119 (15%)

Query: 23  DDVVVLTEDNFEKEVGQDRGALVEFY---------APWCGHCKNLAPTYEKVAAAFTLED 73
           ++V V   + F + V Q  G  +  Y           WC  C    P   +      + +
Sbjct: 2   EEVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVRE--GLKHISE 59

Query: 74  DVVVANLDADKYKDL-------AEKYGVSGFPTLKFFPKGNKDGEEYGGGRDL-EDFVS 124
             V       +            +   V+  PTL  +    K  E      +L E   S
Sbjct: 60  GCVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQKLVESECLQANLVEMLFS 118

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

 Score = 51.4 bits (122), Expect = 2e-09
 Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 9/106 (8%)

Query: 25  VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK 84
           V V + + F   + +D   +  F A WCG CK +    EK+         V  A +DAD 
Sbjct: 11  VDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKI---AYEFPTVKFAKVDADN 67

Query: 85  YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGG--GRDLEDFVSFINE 128
             ++  K  V   PT        + G+  G   G +       + +
Sbjct: 68  NSEIVSKCRVLQLPTFIIA----RSGKMLGHVIGANPGMLRQKLRD 109

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 96

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 50.5 bits (120), Expect = 4e-09
 Identities = 14/84 (16%), Positives = 32/84 (38%), Gaps = 10/84 (11%)

Query: 44  LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 103
              +Y+  C +C ++      +A    L   +    +D   +++   +  V G P +   
Sbjct: 19  FETYYSLSCHNCPDVVQALNLMAV---LNPRIKHTAIDGGTFQNEITERNVMGVPAVFV- 74

Query: 104 PKGNKDGEE-YGGGRDLEDFVSFI 126
                +G+E   G   L + V+ +
Sbjct: 75  -----NGKEFGQGRMTLTEIVAKV 93

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 114

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 50.6 bits (120), Expect = 6e-09
 Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 13/110 (11%)

Query: 25  VVVLTEDNFEKEVGQ----DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL 80
           +   T + + +++ +        +V+F A WCG C+ +AP +  +A        + V   
Sbjct: 9   IACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKV--- 65

Query: 81  DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYG--GGRDLEDFVSFINE 128
           D D+ K +A  + +   PT  F     K+G+      G   ++  S I +
Sbjct: 66  DTDELKSVASDWAIQAMPTFMFL----KEGKILDKVVGAKKDELQSTIAK 111

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (120), Expect = 9e-09
 Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 1/100 (1%)

Query: 30  EDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLA 89
           ED  ++        +V  +  WCG CK L P + +      L  + V+ NL+ ++     
Sbjct: 15  EDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDE 74

Query: 90  EKY-GVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE 128
           +        P + F     K   E         +  F   
Sbjct: 75  DFSPDGGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVS 114

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.0 bits (116), Expect = 2e-08
 Identities = 12/90 (13%), Positives = 21/90 (23%), Gaps = 10/90 (11%)

Query: 44  LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 103
           L  F    C  C       +     F L+      ++   +     E+Y         F 
Sbjct: 19  LTLFTKAPCPLCDEAKEVLQPYKDRFILQ----EVDITLPENSTWYERYKFD---IPVFH 71

Query: 104 PKGNKDGEEYGGGRDLEDFVSFINEKCGTS 133
             G           +       + +  G S
Sbjct: 72  LNG---QFLMMHRVNTSKLEKQLRKLSGPS 98

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 111

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 48.8 bits (115), Expect = 2e-08
 Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 5/108 (4%)

Query: 19  SALADDVVVLTEDNFEKEVGQDRG--ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVV 76
           +A A    V  + + + ++ +  G   +++F+A WCG CK ++P   ++  +    D+VV
Sbjct: 2   AAAAMVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVEL--STQFADNVV 59

Query: 77  VANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGG-GRDLEDFV 123
           V  +D D+ +D+A +Y +S  PT  F   G K  E  G   + LED +
Sbjct: 60  VLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVI 107

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.5 bits (115), Expect = 1e-07
 Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 13/111 (11%)

Query: 27  VLTEDNFEKEV---GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD 83
           + T + F + +    +    +V  Y      C  L  + E +AA +     V    + A 
Sbjct: 104 LETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEY---PMVKFCKIRAS 160

Query: 84  KYKDLAEKYGVSGFPTLKFFPKGNKDG-----EEYGGGR-DLEDFVSFINE 128
                 +++     PTL  +  G          E         D  SF+NE
Sbjct: 161 -NTGAGDRFSSDVLPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNE 210

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

 Score = 42.6 bits (99), Expect = 7e-06
 Identities = 19/120 (15%), Positives = 38/120 (31%), Gaps = 33/120 (27%)

Query: 39  QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVA-------------------- 78
           +D+  L++F+A WC  C +     EK A         ++                     
Sbjct: 22  KDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYA 81

Query: 79  -------NLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEE---YGGGRDLEDFVSFINE 128
                   +  D    +A+   +S +P+        KDG+      G  +    ++ I +
Sbjct: 82  GLNYPKLPVVTDNGGTIAQSLNISVYPSWALI---GKDGDVQRIVKGSINEAQALALIRD 138

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

 Score = 40.7 bits (94), Expect = 3e-05
 Identities = 17/126 (13%), Positives = 38/126 (30%), Gaps = 25/126 (19%)

Query: 28  LTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL------- 80
           L  +   +++  ++  L+ F++  C  CK   P   +    +  + +VV  ++       
Sbjct: 17  LNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDL 76

Query: 81  ------------------DADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDF 122
                               D    L + +     P    F K  +      GG  ++  
Sbjct: 77  DPGKIKETAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKML 136

Query: 123 VSFINE 128
              +N 
Sbjct: 137 EKRVNR 142

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 7/86 (8%), Positives = 22/86 (25%), Gaps = 3/86 (3%)

Query: 44  LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF 103
           L+     WC  C+      +         +  ++      + +D   +        +   
Sbjct: 58  LLVAGEMWCPDCQINLAALDFAQRLQPNIELAII---SKGRAEDDLRQRLALERIAIPLV 114

Query: 104 PKGNKDGEEYGGGRDLEDFVSFINEK 129
              +++    G   +    V     +
Sbjct: 115 LVLDEEFNLLGRFVERPQAVLDGGPQ 140

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	239
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.95
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.94
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.94
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.94
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.94
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.93
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.93
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.92
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.91
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.91
d2c0ga1	106	Windbeutel, C-terminal domain {Fruit fly (Drosophi	99.91
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.9
d1g7da_	106	Endoplasmic reticulum protein ERP29, C-terminal do	99.9
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.9
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.9
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.9
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.9
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.9
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.9
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.89
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.89
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.88
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	99.87
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.87
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.86
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.86
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.84
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.84
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.81
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.81
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.78
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.77
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.66
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.6
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.6
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.6
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.58
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	99.55
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.55
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.54
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	99.53
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.53
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.5
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.47
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.43
d1wjka_	100	Thioredoxin-like structure containing protein C330	99.43
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	99.3
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.29
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	99.22
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	98.8
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	98.7
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	98.64
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	98.63
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	98.62
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	98.61
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	98.52
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	98.48
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	98.45
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	98.43
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	98.41
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	98.35
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	98.35
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	98.33
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	98.25
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	98.25
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	98.15
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	98.15
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	98.13
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	98.12
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	98.06
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	98.06
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	98.04
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	98.03
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	97.93
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	97.91
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	97.91
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	97.9
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	97.84
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	97.8
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	97.8
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	97.8
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	97.7
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	97.67
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	97.66
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	97.64
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	97.6
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	97.49
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	97.46
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	97.22
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	96.85
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	96.74
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	96.27
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	95.96
d1hyua3	102	Alkyl hydroperoxide reductase subunit F (AhpF), N-	95.52
d2axoa1	225	Hypothetical protein Atu2684 {Agrobacterium tumefa	93.42
d1g7oa2	75	Glutaredoxin 2 {Escherichia coli [TaxId: 562]}	92.18
d1t4za_	105	Adaptive-response sensory-kinase SasA, N-terminal	90.76
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	90.53
d1t1va_	93	SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}	89.83
d1a8ya3	119	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	88.99
d1z9ha2	113	Microsomal prostaglandin E synthase-2 {Crab-eating	87.17
d1abaa_	87	Glutaredoxin (Grx, thioltransferase) {Bacteriophag	85.32
d1tp9a1	162	Plant peroxiredoxin {Western balsam poplar(Populus	83.43
d1r5aa2	85	Class delta GST {Mosquito (Anopheles dirus b), iso	81.28

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=5.1e-27  Score=168.03  Aligned_cols=110  Identities=35%  Similarity=0.709  Sum_probs=100.4

Q ss_pred             CCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE
Q 026412           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  101 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  101 (239)
                      .+.+.+++.++|++.+.+++.++|.||+|||++|+++.|.|+++++.+.. +++.++.|||+++++++.+|+|.++||++
T Consensus         9 ~s~v~~lt~~~f~~~i~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~-~~v~~~~vd~~~~~~l~~~~~v~~~Pti~   87 (119)
T d2b5ea4           9 DSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVE-KNITLAQIDCTENQDLCMEHNIPGFPSLK   87 (119)
T ss_dssp             TSSCEECCTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TTCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CCccEEcCHHHHHHHHhcCCeEEEEEECCccCcccccchhhhhhhhhhcc-cceeeeeeeccchHHHHHHhccccCCeEE
Confidence            46789999999999998899999999999999999999999999999863 46999999999999999999999999999


Q ss_pred             EEeCCCc-CccccCCCCCHHHHHHHHHHhhCC
Q 026412          102 FFPKGNK-DGEEYGGGRDLEDFVSFINEKCGT  132 (239)
Q Consensus       102 ~~~~g~~-~~~~~~g~~~~~~l~~~l~~~~~~  132 (239)
                      +|++|.. ....|.|.++.++|.+||+++++|
T Consensus        88 ~f~~g~~~~~~~y~g~~~~~~l~~fi~k~~~P  119 (119)
T d2b5ea4          88 IFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQP  119 (119)
T ss_dssp             EEETTCTTCEEECCSCCSHHHHHHHHHHHTSC
T ss_pred             EEECCEEeeeEEecCCCCHHHHHHHHHHhhCC
Confidence            9988753 456789999999999999998764

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.94  E-value=9.7e-27  Score=163.73  Aligned_cols=105  Identities=28%  Similarity=0.562  Sum_probs=96.8

Q ss_pred             CCcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE
Q 026412           23 DDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  101 (239)
Q Consensus        23 ~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  101 (239)
                      ..+.++++++|++.+ +++++++|.|||+||++|+++.|.|++++..+.  +.+.++.||++++++++++|+|+++||++
T Consensus         2 ~~V~~lt~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~--~~~~~~~vd~d~~~~l~~~~~I~~~Pt~~   79 (108)
T d1thxa_           2 KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYS--DRLKVVKLEIDPNPTTVKKYKVEGVPALR   79 (108)
T ss_dssp             CSEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTT--TTCEEEEEESTTCHHHHHHTTCCSSSEEE
T ss_pred             CCceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccchHHHHHHHhcC--CcceeceecccccHHHHHHhcccCCCEEE
Confidence            568999999999876 778999999999999999999999999999986  46899999999999999999999999999


Q ss_pred             EEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412          102 FFPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus       102 ~~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      +|++| +...++.|.++.+++.+||++++
T Consensus        80 ~~~~g-~~v~~~~G~~~~~~l~~~i~~~L  107 (108)
T d1thxa_          80 LVKGE-QILDSTEGVISKDKLLSFLDTHL  107 (108)
T ss_dssp             EEETT-EEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEECC-EEEEEEeCCCCHHHHHHHHHHhc
Confidence            99876 67788999999999999999875

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.5e-27  Score=167.71  Aligned_cols=112  Identities=44%  Similarity=0.910  Sum_probs=102.1

Q ss_pred             CCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCC-CCeEEEEEeCccchhHHHHcCCCCCCeE
Q 026412           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFPTL  100 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~-~~v~~~~vd~~~~~~l~~~~~i~~~Pt~  100 (239)
                      ...|..++.++|+++++++++++|.||++||++|+.+.|.|.++++.+... ..+.++.||++.++.++.+|+|.++||+
T Consensus         6 ~~~V~~l~~~~f~~~l~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~   85 (120)
T d1meka_           6 EDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTI   85 (120)
T ss_dssp             ETTEEECCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSEE
T ss_pred             CCCeEEcCHHHHHHHHhcCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccchhHHHHhCCccCCeE
Confidence            456889999999999988999999999999999999999999999998643 4699999999999999999999999999


Q ss_pred             EEEeCCCc-CccccCCCCCHHHHHHHHHHhhCCC
Q 026412          101 KFFPKGNK-DGEEYGGGRDLEDFVSFINEKCGTS  133 (239)
Q Consensus       101 ~~~~~g~~-~~~~~~g~~~~~~l~~~l~~~~~~~  133 (239)
                      ++|++|.. .+..|.|.++.++|.+||++.+|++
T Consensus        86 ~~~~~G~~~~~~~~~g~~~~~~l~~fi~~~~~p~  119 (120)
T d1meka_          86 KFFRNGDTASPKEYTAGREADDIVNWLKKRTGPA  119 (120)
T ss_dssp             EEEESSCSSSCEECCCCSSHHHHHHHHHTTSCCC
T ss_pred             EEEECCeEeeeEEecCCCCHHHHHHHHHHhhCCC
Confidence            99998854 4567999999999999999999876

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=2.5e-26  Score=161.62  Aligned_cols=105  Identities=33%  Similarity=0.696  Sum_probs=96.7

Q ss_pred             CCcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE
Q 026412           23 DDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  101 (239)
Q Consensus        23 ~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  101 (239)
                      ..+.++++++|++.+ +++++++|.|||+||+||+.+.|.+.+++..+.  +++.++.+|+++++.++.+|+|.++||++
T Consensus         2 ~~v~~lt~~~f~~~v~~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~--~~~~~~~vd~d~~~~l~~~~~v~~~PT~~   79 (108)
T d2trxa_           2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNPGTAPKYGIRGIPTLL   79 (108)
T ss_dssp             TTEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTEEEEEEETTTCTTHHHHTTCCSSSEEE
T ss_pred             CCceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccCcHHHHHHHHhh--cceeeeeccccchhhHHHHhCCCcEEEEE
Confidence            578999999999876 778999999999999999999999999998875  57999999999999999999999999999


Q ss_pred             EEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412          102 FFPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus       102 ~~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      +|++| +...++.|.++.+.|.+||++++
T Consensus        80 ~~~~G-~~v~~~~G~~~~~~l~~~i~~~L  107 (108)
T d2trxa_          80 LFKNG-EVAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             EEETT-EEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEECC-EEEEEEeCCCCHHHHHHHHHHhc
Confidence            99877 67788999999999999999875

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.94  E-value=1.9e-26  Score=161.11  Aligned_cols=103  Identities=26%  Similarity=0.575  Sum_probs=94.6

Q ss_pred             cEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEE
Q 026412           25 VVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF  103 (239)
Q Consensus        25 v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~  103 (239)
                      +.++++++|++.+ +++++++|.|||+||++|+.+.|.+.++++.+.  +.+.++.||++++++++++|+|+++||+++|
T Consensus         1 v~el~d~~f~~~v~~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~--~~~~~~~v~~d~~~~l~~~~~V~~~Pt~~~~   78 (104)
T d1fb6a_           1 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYS--GKIAVYKLNTDEAPGIATQYNIRSIPTVLFF   78 (104)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             CeECchhhHHHHHHcCCCcEEEEEEcCccCCccccCchhHHHHHhhc--CccceeEEecccchhhhhhcceeeeeEEEEE
Confidence            5789999999988 778899999999999999999999999999986  4688999999999999999999999999999


Q ss_pred             eCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412          104 PKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus       104 ~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      ++| +...++.|.++.+.|.+||++.+
T Consensus        79 ~~G-~~v~~~~G~~~~~~l~~~i~~~L  104 (104)
T d1fb6a_          79 KNG-ERKESIIGAVPKSTLTDSIEKYL  104 (104)
T ss_dssp             ETT-EEEEEEEECCCHHHHHHHHHHHC
T ss_pred             EcC-eEEEEEeCCCCHHHHHHHHHHhC
Confidence            876 67788999999999999998763

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.93  E-value=2.2e-26  Score=161.02  Aligned_cols=103  Identities=31%  Similarity=0.626  Sum_probs=95.3

Q ss_pred             cEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEe
Q 026412           25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFP  104 (239)
Q Consensus        25 v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~  104 (239)
                      ...+++++|++.++++++++|.||||||++|+.+.|.+++++..++  +++.++.||++.+++++++|+|.++||+++|+
T Consensus         2 ~i~lt~~~f~~~i~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~--~~~~~~~vd~~~~~~~~~~~~V~~~Pt~~~~~   79 (105)
T d1nw2a_           2 TMTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHA--DKVTVAKLNVDENPETTSQFGIMSIPTLILFK   79 (105)
T ss_dssp             CEEECTTTHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHT--TTCEEEEEETTTCHHHHHHTTCCBSSEEEEEE
T ss_pred             EEEECHHHHHHHHhCCCcEEEEEECCCCCCcccccchhhhhhhhcC--CceEEEEEECCCCcccHHHCCcceeeEEEEEE
Confidence            4678999999999999999999999999999999999999999986  46999999999999999999999999999998


Q ss_pred             CCCcCccccCCCCCHHHHHHHHHHhh
Q 026412          105 KGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus       105 ~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      +| +...++.|..+.+.|.++|++.+
T Consensus        80 ~G-~~~~~~~G~~~~~~l~~~i~~~L  104 (105)
T d1nw2a_          80 GG-EPVKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             TT-EEEEEEESCCCHHHHHHHTTTTC
T ss_pred             CC-EEEEEEECCCCHHHHHHHHHHHh
Confidence            77 66778999999999999998754

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.93  E-value=5.1e-26  Score=159.72  Aligned_cols=103  Identities=28%  Similarity=0.607  Sum_probs=94.2

Q ss_pred             cEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEE
Q 026412           25 VVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF  103 (239)
Q Consensus        25 v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~  103 (239)
                      +..+|+++|++.+ +++++++|.||||||++|+.+.|.+.+++..+.  +++.++.||++.+++++++|+|+++||+++|
T Consensus         3 ~~~i~~~~f~~~v~~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~~vd~d~~~~l~~~~~V~~~Pt~~~~   80 (107)
T d1dbya_           3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYK--DKLKCVKLNTDESPNVASEYGIRSIPTIMVF   80 (107)
T ss_dssp             CEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTCEEEEEETTTCHHHHHHHTCCSSCEEEEE
T ss_pred             ceEecHHHHHHHHHhCCCcEEEEEECCCCCCccccChHHHHHHHhhc--ccceEEEEecccchhHHHHhcccceEEEEEE
Confidence            4567999999987 778899999999999999999999999998875  4689999999999999999999999999999


Q ss_pred             eCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412          104 PKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus       104 ~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      ++| +...++.|.++.++|.+||++.+
T Consensus        81 ~~G-~~v~~~~G~~~~~~l~~~i~~~L  106 (107)
T d1dbya_          81 KGG-KKCETIIGAVPKATIVQTVEKYL  106 (107)
T ss_dssp             SSS-SEEEEEESCCCHHHHHHHHHHHC
T ss_pred             ECC-eEEEEEeCCCCHHHHHHHHHHhh
Confidence            876 67788999999999999999875

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.92  E-value=7.8e-25  Score=157.12  Aligned_cols=108  Identities=19%  Similarity=0.260  Sum_probs=94.3

Q ss_pred             CCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccC-CCCeEEEEEeCc-----cchhHHHHcCC--
Q 026412           23 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTL-EDDVVVANLDAD-----KYKDLAEKYGV--   94 (239)
Q Consensus        23 ~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~-~~~v~~~~vd~~-----~~~~l~~~~~i--   94 (239)
                      .++++|++.||++++.+++.+||.||||||+||+  .|+|.++++.+.. ..++.++.|||+     .+++++++|+|  
T Consensus         2 ~g~v~L~~~nFd~~v~~~~~~lV~Fya~wC~~ck--~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~   79 (122)
T d2c0ga2           2 TGCVDLDELSFEKTVERFPYSVVKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDD   79 (122)
T ss_dssp             TTCEECCTTTHHHHHTTSSEEEEEEEESSCCSHH--HHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCT
T ss_pred             CceEEcChHhHHHHHhcCCcEEEEEECCCCCccc--CHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhccc
Confidence            4688999999999999999999999999999999  4999999987643 457999999986     46899999998  


Q ss_pred             CCCCeEEEEeCCCcCc--cccCCCCCHHHHHHHHHHhhCC
Q 026412           95 SGFPTLKFFPKGNKDG--EEYGGGRDLEDFVSFINEKCGT  132 (239)
Q Consensus        95 ~~~Pt~~~~~~g~~~~--~~~~g~~~~~~l~~~l~~~~~~  132 (239)
                      +++||+++|++|+..+  ..|.|.++.++|.+||++++|.
T Consensus        80 ~~~PTi~~f~~g~~~~~~~~~~g~rt~~~l~~fv~~~~~~  119 (122)
T d2c0ga2          80 KNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTPL  119 (122)
T ss_dssp             TSCCEEEEESSSSSSEEECCTTSCCCHHHHHHHHHHHSSC
T ss_pred             CCCCcEEEEeCCcccccccccCCCCCHHHHHHHHHHhcCc
Confidence            5799999999886543  5678999999999999998863

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.91  E-value=3e-24  Score=154.53  Aligned_cols=108  Identities=17%  Similarity=0.216  Sum_probs=92.5

Q ss_pred             CCCcEEcChhhHHHHhcCCCcEEEEEECCCChHH------hhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCC
Q 026412           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHC------KNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS   95 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C------~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~   95 (239)
                      ...+.+|+++||++++.+++.++|.||+|||+||      ..+.+.++.+++.+. +..+.++.|||+.++++|++|+|+
T Consensus        10 ~~~V~~L~~~nf~~~l~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~-~~~v~~a~Vd~~~~~~l~~~~~I~   88 (124)
T d1a8ya1          10 VDRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLE-DKGVGFGLVDSEKDAAVAKKLGLT   88 (124)
T ss_dssp             CCCCEECCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTG-GGTEEEEEEETTTSHHHHHTTTCC
T ss_pred             CCccEECCHHHHHHHHHhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhc-cCCeEEEEEEeecccchhhccccc
Confidence            4568999999999999888999999999999974      445555666666654 346999999999999999999999


Q ss_pred             CCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhCC
Q 026412           96 GFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGT  132 (239)
Q Consensus        96 ~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~  132 (239)
                      +|||+++|.+|  .+..|.|.++.+.|++||.+.+..
T Consensus        89 ~yPTi~~f~~g--~~~~y~G~r~~~~l~~fi~~~l~~  123 (124)
T d1a8ya1          89 EEDSIYVFKED--EVIEYDGEFSADTLVEFLLDVLED  123 (124)
T ss_dssp             STTCEEEEESS--SEEECCSCCSHHHHHHHHHHHHSC
T ss_pred             cCCcEEEeccC--ccEEeeCCCCHHHHHHHHHHhcCC
Confidence            99999999987  456899999999999999987653

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.91  E-value=6e-25  Score=156.34  Aligned_cols=109  Identities=35%  Similarity=0.688  Sum_probs=90.7

Q ss_pred             CCcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE
Q 026412           23 DDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  101 (239)
Q Consensus        23 ~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  101 (239)
                      ..|..|+++||++.+ +++++++|.||||||+||+++.|.|+++++.+.......+..+++.+...++.+++|+++||++
T Consensus         2 g~V~~lt~~nF~~~v~~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pti~   81 (116)
T d2djja1           2 GPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFPTIK   81 (116)
T ss_dssp             CSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCCSSCCSSSSEEE
T ss_pred             cCcEEcccCCHHHHHhcCCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccchhhhcccccCCCEEE
Confidence            468899999999987 7889999999999999999999999999999876543333344444445556789999999999


Q ss_pred             EEeCCCc-CccccCCCCCHHHHHHHHHHhhC
Q 026412          102 FFPKGNK-DGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus       102 ~~~~g~~-~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      +|++|.. ....|.|.++.++|.+||+++..
T Consensus        82 ~f~~g~~~~~~~~~g~~~~~~l~~fi~~~~~  112 (116)
T d2djja1          82 LYPAGAKGQPVTYSGSRTVEDLIKFIAENGK  112 (116)
T ss_dssp             EECSSCTTSCCCCCCCSCHHHHHHHHHHTSS
T ss_pred             EEECCccCceEEecCCCCHHHHHHHHHHccC
Confidence            9988754 45789999999999999998754

>d2c0ga1 a.71.1.1 (A:1146-1251) Windbeutel, C-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: ERP29 C domain-like
superfamily: ERP29 C domain-like
family: ERP29 C domain-like
domain: Windbeutel, C-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.91  E-value=7.6e-25  Score=150.25  Aligned_cols=96  Identities=23%  Similarity=0.432  Sum_probs=90.5

Q ss_pred             cchhhhhhHHHHHHHhccchhHHHHHHHHHhhhhhhhh-hhhhhhHHHHHHHhhhhhCCCCchHHHHHHHHHHHhccCCh
Q 026412          144 AGIVASLDALVKEFVAASGDEKKAVFSKIERGVEVLEG-STARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISA  222 (239)
Q Consensus       144 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~y~~~~~k~~~~~~~~~~~e~~rl~~~l~~~~~~  222 (239)
                      +|+++++|.++..|+.++++++.++++++++....+.+ .+..+|+||+++|+||+++|++|+++|++||+++|++++|+
T Consensus         2 ~G~i~~~D~La~eF~~a~~~er~~ll~k~~~~~~~l~~~~~~~~a~~Yvkvm~KIl~~g~~fv~~E~~RL~~ll~g~~s~   81 (106)
T d2c0ga1           2 DGCIKEFNEVLKNYANIPDAEQLKLIEKLQAKQEQLTDPEQQQNARAYLIYMRKIHEVGYDFLEEETKRLLRLKAGKVTE   81 (106)
T ss_dssp             TTCCHHHHHHHTTGGGSCHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHTSSCCH
T ss_pred             CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHcCCCCH
Confidence            69999999999999999889999999999999888875 45689999999999999999999999999999999988999


Q ss_pred             hhhhHHHHhhhhhcccC
Q 026412          223 AKADEFVLKKNILSTFT  239 (239)
Q Consensus       223 ~~~~~~~~r~nil~~f~  239 (239)
                      +|+|+|+.|+|||++|.
T Consensus        82 ~K~del~~r~NIL~~F~   98 (106)
T d2c0ga1          82 AKKEELLRKLNILEVFR   98 (106)
T ss_dssp             HHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999995

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.90  E-value=1e-23  Score=148.90  Aligned_cols=104  Identities=29%  Similarity=0.601  Sum_probs=92.3

Q ss_pred             cCCCcEEcChhhHHHHh--cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc-cchhHHHHcCCCCC
Q 026412           21 LADDVVVLTEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-KYKDLAEKYGVSGF   97 (239)
Q Consensus        21 ~~~~v~~l~~~~f~~~~--~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~-~~~~l~~~~~i~~~   97 (239)
                      ..+.+.+++.++|.+.+  .++++++|.||++||++|+.+.|.|+++++.++   ++.++.+|++ ++++++++|+|+++
T Consensus         4 ~~g~v~~~~~d~f~~~l~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~---~v~~~~vd~~~~~~~l~~~~~V~~~   80 (112)
T d1f9ma_           4 IVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL---DVIFLKLDCNQENKTLAKELGIRVV   80 (112)
T ss_dssp             CTTSEEEECTTTHHHHHHTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSTTHHHHHHHCCSSS
T ss_pred             cceeeEEeCHHHHHHHHHHcCCCEEEEEEEcCCCcchHHHHHHHhhhccccc---cceeecccccccchhhHhheeeccC
Confidence            35678999999999998  346899999999999999999999999999985   6889999997 48999999999999


Q ss_pred             CeEEEEeCCCcCccccCCCCCHHHHHHHHHHh
Q 026412           98 PTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus        98 Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~  129 (239)
                      ||+++|++| +...++.|. +.+.+.++|++.
T Consensus        81 Pt~~~~k~G-~~v~~~~G~-~~~~l~e~i~~~  110 (112)
T d1f9ma_          81 PTFKILKEN-SVVGEVTGA-KYDKLLEAIQAA  110 (112)
T ss_dssp             SEEEEEETT-EEEEEEESS-CHHHHHHHHHHH
T ss_pred             CEEEEEECC-EEEEEEeCC-CHHHHHHHHHHc
Confidence            999999876 677888886 778999999764

>d1g7da_ a.71.1.1 (A:) Endoplasmic reticulum protein ERP29, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: ERP29 C domain-like
superfamily: ERP29 C domain-like
family: ERP29 C domain-like
domain: Endoplasmic reticulum protein ERP29, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=2.8e-24  Score=148.06  Aligned_cols=96  Identities=25%  Similarity=0.546  Sum_probs=89.1

Q ss_pred             cchhhhhhHHHHHHHhccc-hhHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHhhhhhCCCCchHHHHHHHHHHHhccCCh
Q 026412          144 AGIVASLDALVKEFVAASG-DEKKAVFSKIERGVEVLEGSTARHGKIYLKVAKNYMDKGSDYAKKEIDRLQRMLDKSISA  222 (239)
Q Consensus       144 ~~~~~~~~~~~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~k~~~~~~~~~~~e~~rl~~~l~~~~~~  222 (239)
                      +|+++.+|.++..|+.+.+ +++..+++++++....+++.+..+|+||+++|+|++++|++|+++|++||++||++++|+
T Consensus         1 pG~i~~lD~la~~F~~~~~~~~r~~i~~~~~~~~~~~~~~~~~~a~~Yvkvm~Kilekg~~~~~~E~~RL~~il~g~vs~   80 (106)
T d1g7da_           1 PGCLPAYDALAGQFIEASSREARQAILKQGQDGLSGVKETDKKWASQYLKIMGKILDQGEDFPASELARISKLIENKMSE   80 (106)
T ss_dssp             CCCCTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTTSCTTTHHHHHHHHHHHHHHHHSCTHHHHHHHHHHHHHHHSCCCT
T ss_pred             CCchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhCCCCH
Confidence            5899999999999998665 668889999999888888778899999999999999999999999999999999988999


Q ss_pred             hhhhHHHHhhhhhcccC
Q 026412          223 AKADEFVLKKNILSTFT  239 (239)
Q Consensus       223 ~~~~~~~~r~nil~~f~  239 (239)
                      +|+|+|+.|+|||++|.
T Consensus        81 ~K~del~~r~NIL~sF~   97 (106)
T d1g7da_          81 GKKEELQRSLNILTAFR   97 (106)
T ss_dssp             TTHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999995

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=3.7e-24  Score=157.29  Aligned_cols=109  Identities=36%  Similarity=0.738  Sum_probs=93.4

Q ss_pred             CCCcEEcChhhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCC-CCeEEEEEeCccchhHHHHcCCCCCCe
Q 026412           22 ADDVVVLTEDNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLE-DDVVVANLDADKYKDLAEKYGVSGFPT   99 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~-~~v~~~~vd~~~~~~l~~~~~i~~~Pt   99 (239)
                      .+.|..|+.+||++.+ +.+++++|.||||||++|+++.|.|.++++.+... ..+.++.+|++  ..++++|+|.++||
T Consensus        11 ~~~V~~l~~~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~--~~~~~~~~v~~~Pt   88 (140)
T d2b5ea1          11 DSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHT--ENDVRGVVIEGYPT   88 (140)
T ss_dssp             SCSEEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGG--GCCCSSCCCSSSSE
T ss_pred             CCCcEEecCcCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeecc--chhccccccccCCe
Confidence            4568999999999998 77889999999999999999999999999987632 35777777765  45799999999999


Q ss_pred             EEEEeCCCc-CccccCCCCCHHHHHHHHHHhhCC
Q 026412          100 LKFFPKGNK-DGEEYGGGRDLEDFVSFINEKCGT  132 (239)
Q Consensus       100 ~~~~~~g~~-~~~~~~g~~~~~~l~~~l~~~~~~  132 (239)
                      +++|++|.. .+..|.|.++.+.|.+||+++.+.
T Consensus        89 l~~f~~g~~~~~~~y~G~~t~~~l~~fi~~~~~~  122 (140)
T d2b5ea1          89 IVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHF  122 (140)
T ss_dssp             EEEECCTTSCCCCBCCSCCCHHHHHHHHHHHCTT
T ss_pred             EEEEECCEEcceeEeCCCCCHHHHHHHHHHcCCC
Confidence            999988753 456799999999999999987643

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.90  E-value=1.5e-23  Score=148.09  Aligned_cols=104  Identities=22%  Similarity=0.613  Sum_probs=91.5

Q ss_pred             CcEEc-ChhhHHHHh----cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCC
Q 026412           24 DVVVL-TEDNFEKEV----GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP   98 (239)
Q Consensus        24 ~v~~l-~~~~f~~~~----~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P   98 (239)
                      .+..+ +.++|++.+    .++++++|.||++||++|+.+.|.|+++++.+.  +++.++.||++++++++++|+|+++|
T Consensus         3 ~v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~--~~v~~~~vd~d~~~~l~~~~~v~~~P   80 (112)
T d1ep7a_           3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYA--GKVIFLKVDVDAVAAVAEAAGITAMP   80 (112)
T ss_dssp             SEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTSEEEEEETTTTHHHHHHHTCCBSS
T ss_pred             CEEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhccc--ceEEEEEeeccccccccccccccCCC
Confidence            45565 677887777    457899999999999999999999999999986  46999999999999999999999999


Q ss_pred             eEEEEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412           99 TLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus        99 t~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      |+++|++| +...++.| .+.++|.+||+++..
T Consensus        81 t~~~~~~G-~~v~~~~G-~~~~~l~~~i~k~~a  111 (112)
T d1ep7a_          81 TFHVYKDG-VKADDLVG-ASQDKLKALVAKHAA  111 (112)
T ss_dssp             EEEEEETT-EEEEEEES-CCHHHHHHHHHHHHC
T ss_pred             EEEEEECC-EEEEEEeC-cCHHHHHHHHHHHhC
Confidence            99999877 66778888 489999999998764

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.9e-23  Score=145.91  Aligned_cols=96  Identities=30%  Similarity=0.678  Sum_probs=86.5

Q ss_pred             ChhhHHHHh--cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCC
Q 026412           29 TEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG  106 (239)
Q Consensus        29 ~~~~f~~~~--~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g  106 (239)
                      +.++|++.+  .++++++|.|||+||++|+.+.|.+.++++.++   ++.++.||++++++++++|+|+++||+++|++|
T Consensus         7 s~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~---~~~~~~vd~d~~~~~~~~~~V~~~Pt~~~~~~G   83 (105)
T d2ifqa1           7 SKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS---NVIFLEVDVDDCQDVASECEVKCMPTFQFFKKG   83 (105)
T ss_dssp             SHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTCHHHHHHTTCCBSSEEEEEETT
T ss_pred             CHHHHHHHHHhCCCCEEEEEEEcCCccchhhhhhhhhhhccccc---cceeeecccccCHhHHHHcCceEEEEEEEEECC
Confidence            567899998  457899999999999999999999999999885   578999999999999999999999999999877


Q ss_pred             CcCccccCCCCCHHHHHHHHHHh
Q 026412          107 NKDGEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus       107 ~~~~~~~~g~~~~~~l~~~l~~~  129 (239)
                       +...++.|. +.+++.++|++.
T Consensus        84 -~~v~~~~G~-~~~~l~~~i~~~  104 (105)
T d2ifqa1          84 -QKVGEFSGA-NKEKLEATINEL  104 (105)
T ss_dssp             -EEEEEEESC-CHHHHHHHHHHH
T ss_pred             -EEEEEEeCC-CHHHHHHHHHhh
Confidence             677888885 789999999875

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=2.3e-23  Score=147.62  Aligned_cols=104  Identities=24%  Similarity=0.545  Sum_probs=90.6

Q ss_pred             CCCcEEc-ChhhHHHHh----cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCC
Q 026412           22 ADDVVVL-TEDNFEKEV----GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG   96 (239)
Q Consensus        22 ~~~v~~l-~~~~f~~~~----~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~   96 (239)
                      ...+..+ +.++|++.+    +++++++|+|||+||++|+.+.|.++++++.++   ++.++.||++++++++++|+|++
T Consensus         5 ~~~vi~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~---~~~~~~vd~~~~~~l~~~~~V~~   81 (114)
T d1xfla_           5 EGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP---NVLFLKVDTDELKSVASDWAIQA   81 (114)
T ss_dssp             CSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS---SEEEEEEETTTSHHHHHHTTCCS
T ss_pred             CCcEEEEcCHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhccccc---ccceeEEEeeeceeeccccceee
Confidence            4455554 778887766    568899999999999999999999999999885   68999999999999999999999


Q ss_pred             CCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412           97 FPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus        97 ~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      +||+++|++| +...++.|. +.+++.++|++++
T Consensus        82 ~Pt~~~~~~G-~~v~~~~G~-~~~~l~~~i~k~l  113 (114)
T d1xfla_          82 MPTFMFLKEG-KILDKVVGA-KKDELQSTIAKHL  113 (114)
T ss_dssp             SSEEEEEETT-EEEEEEESC-CHHHHHHHHHHHC
T ss_pred             eEEEEEEECC-EEEEEEeCc-CHHHHHHHHHHhh
Confidence            9999999877 667778885 7999999998875

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.6e-23  Score=145.54  Aligned_cols=98  Identities=23%  Similarity=0.464  Sum_probs=88.9

Q ss_pred             cChhhHHHHh--cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeC
Q 026412           28 LTEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPK  105 (239)
Q Consensus        28 l~~~~f~~~~--~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~  105 (239)
                      .+.++|++.+  .++++++|.|||+||++|+.+.|.++++++.++   ++.|+.+|++++++++++|+|+++||+++|++
T Consensus         7 ~s~~~f~~~l~~~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~---~~~f~~vd~d~~~~l~~~~~v~~~Pt~~~~~~   83 (107)
T d1gh2a_           7 GSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP---QAVFLEVDVHQCQGTAATNNISATPTFQFFRN   83 (107)
T ss_dssp             CSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTSHHHHHHTTCCSSSEEEEEET
T ss_pred             CCHHHHHHHHHhCCCCEEEEEEECCCCCCccccchhhhccccccc---cccccccccccchhhhhhcCceeceEEEEEEC
Confidence            4678999988  457899999999999999999999999999985   68999999999999999999999999999987


Q ss_pred             CCcCccccCCCCCHHHHHHHHHHhh
Q 026412          106 GNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus       106 g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      | +...++.|. +.+.|.++|++++
T Consensus        84 G-~~v~~~~G~-~~~~l~~~i~k~l  106 (107)
T d1gh2a_          84 K-VRIDQYQGA-DAVGLEEKIKQHL  106 (107)
T ss_dssp             T-EEEEEEESS-CHHHHHHHHHHHH
T ss_pred             C-EEEEEEeCC-CHHHHHHHHHHhh
Confidence            7 677888885 8999999999875

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.90  E-value=3.2e-23  Score=146.14  Aligned_cols=104  Identities=28%  Similarity=0.647  Sum_probs=90.6

Q ss_pred             CCCcEEc-ChhhHHHHh--cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCC
Q 026412           22 ADDVVVL-TEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP   98 (239)
Q Consensus        22 ~~~v~~l-~~~~f~~~~--~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P   98 (239)
                      ++.+.++ +.++|+..+  .++++++|.|||+||++|+.+.|.|+++++.++  +.+.++.||++++++++++|+|+++|
T Consensus         4 ~~~v~~i~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~--~~~~~~~i~~d~~~~l~~~~~V~~~P   81 (111)
T d1xwaa_           4 AAMVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFA--DNVVVLKVDVDECEDIAMEYNISSMP   81 (111)
T ss_dssp             SCCEEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTT--TTEEEEEEETTTCHHHHHHTTCCSSS
T ss_pred             CCeEEEECCHHHHHHHHHhcCCCEEEEEEECCcccCccccchhHHHHhhhcc--cceEEEEEEeecCcchhhcCCCcccc
Confidence            4455565 568899888  568899999999999999999999999999986  46899999999999999999999999


Q ss_pred             eEEEEeCCCcCccccCCCCCHHHHHHHHHHh
Q 026412           99 TLKFFPKGNKDGEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus        99 t~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~  129 (239)
                      |+++|++| +...++.|. +.+++.+||+++
T Consensus        82 t~~~~~~G-~~v~~~~G~-~~~~l~~~I~~~  110 (111)
T d1xwaa_          82 TFVFLKNG-VKVEEFAGA-NAKRLEDVIKAN  110 (111)
T ss_dssp             EEEEEETT-EEEEEEESC-CHHHHHHHHHHT
T ss_pred             EEEEEECC-EEEEEEeCC-CHHHHHHHHHhc
Confidence            99999877 667788886 668899999875

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.90  E-value=1.8e-23  Score=145.46  Aligned_cols=97  Identities=27%  Similarity=0.630  Sum_probs=88.5

Q ss_pred             cChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCC
Q 026412           28 LTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN  107 (239)
Q Consensus        28 l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~  107 (239)
                      .+.++|+++++++++++|.||++||++|+.+.|.++++++.++   ++.++.+|++++++++++|+|.++||+++|++| 
T Consensus         6 ~s~~~f~~~i~~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~---~~~~~~vd~d~~~~~~~~~~V~~~Pt~i~~k~G-   81 (103)
T d1syra_           6 TSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT---KMVFIKVDVDEVSEVTEKENITSMPTFKVYKNG-   81 (103)
T ss_dssp             CSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEETTTTHHHHHHTTCCSSSEEEEEETT-
T ss_pred             CCHHHHHHHHhCCCcEEEEEeCCcccCcccccccchhhhhccc---ceEEEeeccccCcceeeeeeeecceEEEEEECC-
Confidence            4688999999889999999999999999999999999999985   578999999999999999999999999999876 


Q ss_pred             cCccccCCCCCHHHHHHHHHHh
Q 026412          108 KDGEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus       108 ~~~~~~~g~~~~~~l~~~l~~~  129 (239)
                      +...++.|. +.+.+.+||+++
T Consensus        82 ~~v~~~~G~-~~~~l~~~i~k~  102 (103)
T d1syra_          82 SSVDTLLGA-NDSALKQLIEKY  102 (103)
T ss_dssp             EEEEEEESC-CHHHHHHHHHTT
T ss_pred             EEEEEEeCc-CHHHHHHHHHhh
Confidence            667788885 789999999875

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.89  E-value=4.3e-23  Score=145.82  Aligned_cols=104  Identities=26%  Similarity=0.373  Sum_probs=91.4

Q ss_pred             CCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEE
Q 026412           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLK  101 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~  101 (239)
                      ++-+...+.++|++++.++++++|+|||+||++|+.+.|.++++++.++   ++.++.||++++++++++|+|.++||++
T Consensus         8 p~vi~i~s~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~vd~d~~~~l~~~~~V~~~Pt~~   84 (113)
T d1r26a_           8 PSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP---TVKFAKVDADNNSEIVSKCRVLQLPTFI   84 (113)
T ss_dssp             SCCEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT---TSEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CceEEeCCHHHHHHHHcCCCeEEEEEECCCCccchhhceeccccccccc---cccccccccccchhhHHHccccCCCEEE
Confidence            3444445889999999999999999999999999999999999999985   7999999999999999999999999999


Q ss_pred             EEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412          102 FFPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus       102 ~~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      +|++| +...++.|. +++.+.++|++.+
T Consensus        85 ~~~~G-~~v~~~~G~-~~~~l~~~l~~~i  111 (113)
T d1r26a_          85 IARSG-KMLGHVIGA-NPGMLRQKLRDII  111 (113)
T ss_dssp             EEETT-EEEEEEESS-CHHHHHHHHHHHH
T ss_pred             EEECC-EEEEEEeCC-CHHHHHHHHHHHh
Confidence            99887 666788885 6788888887654

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.89  E-value=3.2e-23  Score=146.59  Aligned_cols=94  Identities=31%  Similarity=0.632  Sum_probs=83.4

Q ss_pred             hHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCcc
Q 026412           32 NFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGE  111 (239)
Q Consensus        32 ~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~  111 (239)
                      .|++...++++++|.||++||++|+.+.|.|+++++.+.   ++.++.+|++++++++.+|+|+++||+++|++| +...
T Consensus        18 ~l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~---~~~~~~vd~d~~~~l~~~~~I~~~Pt~~~~k~G-~~v~   93 (113)
T d1ti3a_          18 HFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP---NVTFLKVDVDELKAVAEEWNVEAMPTFIFLKDG-KLVD   93 (113)
T ss_dssp             HHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS---SEEEEEEETTTCHHHHHHHHCSSTTEEEEEETT-EEEE
T ss_pred             HHHHHHcCCCEEEEEEEcCccccchhhhhhhhhhhccCC---CceEEeeeeeccccccccCeecccceEEEEECC-EEEE
Confidence            345555778999999999999999999999999999975   688999999999999999999999999999877 6667


Q ss_pred             ccCCCCCHHHHHHHHHHhh
Q 026412          112 EYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus       112 ~~~g~~~~~~l~~~l~~~~  130 (239)
                      ++.| .+.++|.+||+++.
T Consensus        94 ~~~G-~~~~~l~~~i~k~a  111 (113)
T d1ti3a_          94 KTVG-ADKDGLPTLVAKHA  111 (113)
T ss_dssp             EEEC-CCTTHHHHHHHHHH
T ss_pred             EEcC-CCHHHHHHHHHHHh
Confidence            7778 58899999998874

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.88  E-value=2.9e-22  Score=140.20  Aligned_cols=103  Identities=18%  Similarity=0.283  Sum_probs=87.7

Q ss_pred             EcChhhHHHHhcCCCcE-EEEEECCCChHHhhHhHHHHHHHHHc--cCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEE
Q 026412           27 VLTEDNFEKEVGQDRGA-LVEFYAPWCGHCKNLAPTYEKVAAAF--TLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFF  103 (239)
Q Consensus        27 ~l~~~~f~~~~~~~k~v-lV~F~a~wC~~C~~~~~~~~~~a~~~--~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~  103 (239)
                      +|++++++.+...++++ ++.||+|||+||+++.|.+++++...  .....+.+..+|++++++++++|+|.++||++++
T Consensus         1 ~l~~~~~e~~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~l~~~~~V~~vPTi~i~   80 (107)
T d1a8la2           1 NLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQ   80 (107)
T ss_dssp             CCCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEE
T ss_pred             CCCHHHHHHHHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccccccccccccccceEEEEE
Confidence            36778888777666665 55699999999999999999998653  2345789999999999999999999999999999


Q ss_pred             eCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412          104 PKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus       104 ~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      ++| +...++.|.++.+.+.++|.+.+
T Consensus        81 ~~G-~~~~~~~G~~~~~~~~~~i~~al  106 (107)
T d1a8la2          81 VNG-EDRVEFEGAYPEKMFLEKLLSAL  106 (107)
T ss_dssp             ETT-EEEEEEESCCCHHHHHHHHHHHH
T ss_pred             eCC-eEEEEEECCCCHHHHHHHHHHhh
Confidence            877 66788999999999999998865

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=2.1e-22  Score=144.26  Aligned_cols=106  Identities=20%  Similarity=0.347  Sum_probs=91.5

Q ss_pred             CCCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEE-----eCccchhHHHHcC--C
Q 026412           22 ADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANL-----DADKYKDLAEKYG--V   94 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~v-----d~~~~~~l~~~~~--i   94 (239)
                      ..++++||+.||++++.+++.++|.||+|||.+|+  .|.|.++++.+....++..+.|     ||+.+++++.+|+  |
T Consensus         3 ~~~~v~L~~~nFd~~i~~~~~~lV~F~~~wc~~~~--~~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~~I   80 (122)
T d1g7ea_           3 TKGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEK--QDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDK   80 (122)
T ss_dssp             CSSSCSCSHHHHHHHGGGSSEEEEEEECSSCCTTT--THHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTCSS
T ss_pred             CCceEECCHHhHHHHHhhCCeEEEEEecCCcCccc--CHHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhcccc
Confidence            35688999999999999999999999999998886  4899999999987666655555     6778899999875  7


Q ss_pred             CCCCeEEEEeCCCc-CccccCCCCCHHHHHHHHHHh
Q 026412           95 SGFPTLKFFPKGNK-DGEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus        95 ~~~Pt~~~~~~g~~-~~~~~~g~~~~~~l~~~l~~~  129 (239)
                      ++|||+++|++|.. .+..|.|.++.++|.+||+++
T Consensus        81 ~~yPTi~~f~~G~~~~~~~y~G~rt~~~l~~fi~~~  116 (122)
T d1g7ea_          81 ESYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLKGQ  116 (122)
T ss_dssp             SSCEEEEEEESSCCCCCEEEESCCCHHHHHHHHHTT
T ss_pred             cCCCeEEEEecCcccCceecCCCCCHHHHHHHHHhc
Confidence            79999999999864 467899999999999999986

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=1.6e-22  Score=146.39  Aligned_cols=111  Identities=14%  Similarity=0.181  Sum_probs=98.8

Q ss_pred             CCCcEEcChhhHHHHh--cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCe
Q 026412           22 ADDVVVLTEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT   99 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~--~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt   99 (239)
                      +.++..++..+|+..+  ..++++++.|||+|||+|+++.|.+.++++++++. .+.++.||++.+++++++|+|.++||
T Consensus        16 ~~g~~~~~~~~~d~~~~~~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~-~~~~a~Vd~d~~~~la~~~~V~~~PT   94 (132)
T d2hfda1          16 ARGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDY-TWQVAIADLEQSEAIGDRFGVFRFPA   94 (132)
T ss_dssp             TTTCEEECHHHHHHHHHHCSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTS-CEEEEEECHHHHHHHHHHHTCCSCCE
T ss_pred             HcCCcccccccHHHHHHhCCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCC-cceeEEEEecCCHHHHHhhccCccee
Confidence            4577889999999988  34567888999999999999999999999998743 47889999999999999999999999


Q ss_pred             EEEEeCCCcCccccCCCCCHHHHHHHHHHhhCCCC
Q 026412          100 LKFFPKGNKDGEEYGGGRDLEDFVSFINEKCGTSR  134 (239)
Q Consensus       100 ~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~  134 (239)
                      +++|++| +....+.|.++.+++.++|+..+.+..
T Consensus        95 ~~~~~~G-~~v~~~~G~~~~~~l~~~i~~ll~~~~  128 (132)
T d2hfda1          95 TLVFTGG-NYRGVLNGIHPWAELINLMRGLVEPQQ  128 (132)
T ss_dssp             EEEEETT-EEEEEECCCSCHHHHHHHHHHHHSCSS
T ss_pred             EEEEEcC-cEeeeecCCCCHHHHHHHHHHHhCccc
Confidence            9999877 678899999999999999999887654

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.4e-22  Score=144.85  Aligned_cols=100  Identities=17%  Similarity=0.261  Sum_probs=82.7

Q ss_pred             ChhhHHHHh--cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCC
Q 026412           29 TEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKG  106 (239)
Q Consensus        29 ~~~~f~~~~--~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g  106 (239)
                      +..+|++.+  .++++++|.|||+||++|+++.|.+++++++++  +.+.++.||++++++++++|+|+++||+++|.+|
T Consensus         9 s~~~~dq~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~--~~v~~~~VDvd~~~~la~~~~I~~~PT~~~f~~g   86 (137)
T d1qgva_           9 NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVK--NFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRN   86 (137)
T ss_dssp             SHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHT--TTEEEEEEETTTCCTTTTSSCSCSSCEEEEEETT
T ss_pred             CHHHHHHHHHhCCCCEEEEEEECCCCccchhcChHHHHHHHHhh--ccceEEEeeccccchhhhhcCeeeEEEEEEEeCC
Confidence            567899998  457799999999999999999999999999986  4699999999999999999999999999999988


Q ss_pred             CcCccccC--------C-CCCHHHHHHHHHHhh
Q 026412          107 NKDGEEYG--------G-GRDLEDFVSFINEKC  130 (239)
Q Consensus       107 ~~~~~~~~--------g-~~~~~~l~~~l~~~~  130 (239)
                      ......+.        + ..+.+++++.++...
T Consensus        87 ~~i~~~~g~~~~~k~~~~l~~~~~~i~~ie~i~  119 (137)
T d1qgva_          87 KHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY  119 (137)
T ss_dssp             EEEEEECC------CCSCCSCHHHHHHHHHHHH
T ss_pred             cEEEEEecCCCcceeeeehhhhHHHHHHHHHHH
Confidence            53322221        2 246777777776543

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.86  E-value=4e-22  Score=141.86  Aligned_cols=107  Identities=13%  Similarity=0.174  Sum_probs=82.8

Q ss_pred             CCCcEEcChhhHHHHh--cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCe
Q 026412           22 ADDVVVLTEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPT   99 (239)
Q Consensus        22 ~~~v~~l~~~~f~~~~--~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt   99 (239)
                      +.++..++..+++..+  .+.+++++.||++|||+|+.+.|.+.++++.++ +.++.++.||++.+++++++|+|+++||
T Consensus        10 ~~g~~~v~~~~ld~~~~~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~-~~~~~~~~Vd~d~~~~l~~~~~V~~~Pt   88 (119)
T d2es7a1          10 TRGWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFP-QFDWQVAVADLEQSEAIGDRFNVRRFPA   88 (119)
T ss_dssp             TTTCEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCT-TSCCEEEEECHHHHHHHHHTTTCCSSSE
T ss_pred             HcCCceecccCHHHHHHhCCCcEEEEeecCCCCccHHHHHHHHHHHHHhcC-CCceEEEEEECCCCHHHHHhcCcCcceE
Confidence            3567889999999888  446678889999999999999999999999986 3368999999999999999999999999


Q ss_pred             EEEEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412          100 LKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus       100 ~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      +++|++| +...++.|.++.+++.++|+..+
T Consensus        89 ~~~~~~G-~~v~~~~G~~~~~~l~~~i~~lL  118 (119)
T d2es7a1          89 TLVFTDG-KLRGALSGIHPWAELLTLMRSIV  118 (119)
T ss_dssp             EEEESCC-----CEESCCCHHHHHHHHHHHH
T ss_pred             EEEEEcC-eEEEEeeCCCCHHHHHHHHHHHh
Confidence            9999766 77889999999999999998765

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.84  E-value=1e-21  Score=131.70  Aligned_cols=84  Identities=25%  Similarity=0.392  Sum_probs=74.7

Q ss_pred             CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCH
Q 026412           40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDL  119 (239)
Q Consensus        40 ~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~  119 (239)
                      +|..++.|||+||+||+.+.|.|+++++.+.  +.+.+..+|++++++++++|+|+++||++++++|     .+.|.++.
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~~~~~d~~~~la~~~~V~~~Pt~~i~~~g-----~~~G~~~~   74 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMP--DAVEVEYINVMENPQKAMEYGIMAVPTIVINGDV-----EFIGAPTK   74 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCS--SSEEEEEEESSSSCCTTTSTTTCCSSEEEETTEE-----ECCSSSSS
T ss_pred             CceEEEEEECCCCcChHhhhhhccccccccc--cccccccccccccccccccCCceEeeEEEEECCc-----EEECCCCH
Confidence            5788999999999999999999999999875  4688999999999999999999999999887654     36799999


Q ss_pred             HHHHHHHHHhh
Q 026412          120 EDFVSFINEKC  130 (239)
Q Consensus       120 ~~l~~~l~~~~  130 (239)
                      +++.+||++++
T Consensus        75 ~~l~~~i~~~L   85 (85)
T d1fo5a_          75 EALVEAIKKRL   85 (85)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHhcC
Confidence            99999998763

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.84  E-value=1.6e-20  Score=132.90  Aligned_cols=101  Identities=16%  Similarity=0.256  Sum_probs=86.9

Q ss_pred             CCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----chhHHHHcCCCCCC
Q 026412           23 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----YKDLAEKYGVSGFP   98 (239)
Q Consensus        23 ~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~P   98 (239)
                      ..+...+.+++.+.+.++++++|+||+|||+||+++.|.|.+++..++  ..+.++.++...    ..+++++|+|.++|
T Consensus         9 ~~~~~~t~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~--~~v~~v~~~~~~~~~~~~~~~~~~~V~~~P   86 (115)
T d1zmaa1           9 KDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETK--AHIYFINSEEPSQLNDLQAFRSRYGIPTVP   86 (115)
T ss_dssp             TTSEECCHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHC--CCCEEEETTCGGGHHHHHHHHHHHTCCSSC
T ss_pred             eeeeeCCHHHHHHHHhcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhh--hhhhhheeeccccccccccccccccccccc
Confidence            456778889999999999999999999999999999999999999875  346666555433    25788999999999


Q ss_pred             eEEEEeCCCcCccccCCCCCHHHHHHHH
Q 026412           99 TLKFFPKGNKDGEEYGGGRDLEDFVSFI  126 (239)
Q Consensus        99 t~~~~~~g~~~~~~~~g~~~~~~l~~~l  126 (239)
                      |+++|++| +...++.|..+.+++.+||
T Consensus        87 Tli~~~~g-k~~~~~~G~~~~~el~~fl  113 (115)
T d1zmaa1          87 GFVHITDG-QINVRCDSSMSAQEIKDFA  113 (115)
T ss_dssp             EEEEEETT-EEEEECCTTCCHHHHHHHH
T ss_pred             EEEEEECC-EEEEEEcCCCCHHHHHHHH
Confidence            99999877 6788999999999999998

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.81  E-value=8e-21  Score=127.19  Aligned_cols=81  Identities=21%  Similarity=0.391  Sum_probs=71.6

Q ss_pred             EEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHH
Q 026412           43 ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDF  122 (239)
Q Consensus        43 vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l  122 (239)
                      .++.||+|||+||+++.|.|+++++.++  +++.++.+|++++++++++|+|.++||++++  | +  .++.|.++.+.+
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~--~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~~--~-~--~~~~G~~~~~~l   76 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFG--DKIDVEKIDIMVDREKAIEYGLMAVPAIAIN--G-V--VRFVGAPSREEL   76 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHC--SSCCEEEECTTTCGGGGGGTCSSCSSEEEET--T-T--EEEECSSCCHHH
T ss_pred             EEEEEECCCCcchHHHHHHHhhhccccc--ccccccccccccchhhHHhcCceEeCEEEEC--C-c--EEEEcCCCHHHH
Confidence            4566999999999999999999999986  4699999999999999999999999998663  3 2  357899999999


Q ss_pred             HHHHHHhh
Q 026412          123 VSFINEKC  130 (239)
Q Consensus       123 ~~~l~~~~  130 (239)
                      .++|++.+
T Consensus        77 ~~~i~~~l   84 (85)
T d1nhoa_          77 FEAINDEM   84 (85)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhh
Confidence            99999865

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=3.6e-20  Score=131.45  Aligned_cols=101  Identities=21%  Similarity=0.394  Sum_probs=77.9

Q ss_pred             cChhhHHHHh--cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc----cchhHHHHcCCCCCCeEE
Q 026412           28 LTEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD----KYKDLAEKYGVSGFPTLK  101 (239)
Q Consensus        28 l~~~~f~~~~--~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~----~~~~l~~~~~i~~~Pt~~  101 (239)
                      -+.++++..+  .++|+++|.|||+||++|+.+.|.+....+......++.+..+|++    .+.+++++|+|.++||++
T Consensus         8 ~~~~~~~~~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~   87 (117)
T d2fwha1           8 KTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLPTIL   87 (117)
T ss_dssp             CSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCCSSSEEE
T ss_pred             cCHHHHHHHHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhccceEEEecccccchhHHHHHHhhhehhhceEEE
Confidence            3456677666  5689999999999999999999998443332222236777777764    456799999999999999


Q ss_pred             EEeCCCcCc--cccCCCCCHHHHHHHHHH
Q 026412          102 FFPKGNKDG--EEYGGGRDLEDFVSFINE  128 (239)
Q Consensus       102 ~~~~g~~~~--~~~~g~~~~~~l~~~l~~  128 (239)
                      +|+++|+..  .++.|.+++++|.++|++
T Consensus        88 ~~~~~G~~~~~~~~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1          88 FFDGQGQEHPQARVTGFMDAETFSAHLRD  116 (117)
T ss_dssp             EECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred             EEeCCCcEEecccccccCCHHHHHHHHhc
Confidence            997665544  357899999999999986

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4.7e-19  Score=125.84  Aligned_cols=99  Identities=17%  Similarity=0.262  Sum_probs=79.1

Q ss_pred             cEEcChhhHHHHh--cCCCcEEEEEECC-------CChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc-------cchhH
Q 026412           25 VVVLTEDNFEKEV--GQDRGALVEFYAP-------WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-------KYKDL   88 (239)
Q Consensus        25 v~~l~~~~f~~~~--~~~k~vlV~F~a~-------wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~-------~~~~l   88 (239)
                      +...+.++|.+.+  .++++++|+|||+       ||+||+++.|.+.++++.++  +++.|+.||++       .+..+
T Consensus         4 i~v~~~~e~~~~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~--~~~~~~~vdv~~~~~~~d~~~~l   81 (119)
T d1woua_           4 VSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHIS--EGCVFIYCQVGEKPYWKDPNNDF   81 (119)
T ss_dssp             EEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCC--TTEEEEEEECCCHHHHHCTTCHH
T ss_pred             EEeCCHHHHHHHHHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcC--CceEEEEEECCCCcccchhhhhH
Confidence            3456678899888  4568999999995       99999999999999998875  46999999984       45679


Q ss_pred             HHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHH
Q 026412           89 AEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN  127 (239)
Q Consensus        89 ~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~  127 (239)
                      +++|+|.++||+++|++|++ ...+.+ .+.+.+..|++
T Consensus        82 ~~~~~V~~iPT~i~~~~g~~-l~~~~~-~~~~ll~~~~~  118 (119)
T d1woua_          82 RKNLKVTAVPTLLKYGTPQK-LVESEC-LQANLVEMLFS  118 (119)
T ss_dssp             HHHHCCCSSSEEEETTSSCE-EEGGGG-GCHHHHHHHHH
T ss_pred             HHhCCeEEEEEEEEEECCeE-Eeeeec-CCHHHHHHHhc
Confidence            99999999999999988743 344443 45666666664

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.77  E-value=1.7e-18  Score=118.23  Aligned_cols=89  Identities=15%  Similarity=0.309  Sum_probs=73.8

Q ss_pred             hhHHHHh--cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCc
Q 026412           31 DNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNK  108 (239)
Q Consensus        31 ~~f~~~~--~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~  108 (239)
                      +++.+.+  ..+...++.||+||||||+.+.|.+++++..++   ++.+..+|++.+++++++|+|.++||+++  +| +
T Consensus         4 ~~~~e~ik~l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~---~i~~~~vd~~~~~~l~~~~~I~~vPt~~~--ng-~   77 (96)
T d1hyua4           4 QSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP---RIKHTAIDGGTFQNEITERNVMGVPAVFV--NG-K   77 (96)
T ss_dssp             HHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT---TEEEEEEETTTCHHHHHHTTCCSSSEEEE--TT-E
T ss_pred             HHHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHhCC---ceEEEEEecccchHHHhhcccccccEEEE--CC-E
Confidence            3444444  235567888999999999999999999998864   79999999999999999999999999754  54 3


Q ss_pred             CccccCCCCCHHHHHHHHH
Q 026412          109 DGEEYGGGRDLEDFVSFIN  127 (239)
Q Consensus       109 ~~~~~~g~~~~~~l~~~l~  127 (239)
                      .  .+.|.++.++|+++|.
T Consensus        78 ~--~~~G~~~~~~l~~~le   94 (96)
T d1hyua4          78 E--FGQGRMTLTEIVAKVD   94 (96)
T ss_dssp             E--EEESCCCHHHHHHHHC
T ss_pred             E--EEecCCCHHHHHHHHh
Confidence            2  3779999999999884

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=1.3e-16  Score=115.67  Aligned_cols=95  Identities=16%  Similarity=0.229  Sum_probs=73.6

Q ss_pred             hhHHHHh-cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc-----------------------cch
Q 026412           31 DNFEKEV-GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-----------------------KYK   86 (239)
Q Consensus        31 ~~f~~~~-~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~-----------------------~~~   86 (239)
                      ..|.... .++|+++|+|||+||++|++..|.+.++++.     ++.++.++.+                       .+.
T Consensus        10 ~~~~~~~l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~-----~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~   84 (136)
T d1z5ye1          10 QFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDG   84 (136)
T ss_dssp             CEECHHHHHSSSCEEEEEECTTCHHHHHHHHHHHHHHHT-----TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSC
T ss_pred             cEecHHHHcCCCEEEEEEEcCcCCCcCccccchhhhhhh-----hhhhcccccccchhhhHHHHHHcCCccceeecccch
Confidence            3444333 5799999999999999999999999998764     2333433322                       234


Q ss_pred             hHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412           87 DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus        87 ~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      .++..|++.++|++++++++|+...++.|..+.+.+.+.|++.+
T Consensus        85 ~~~~~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~ll  128 (136)
T d1z5ye1          85 MLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLW  128 (136)
T ss_dssp             HHHHHHTCCSBSEEEEECTTSCEEEEEESCCCHHHHHHHTHHHH
T ss_pred             hHHHhcccCCcceEEEEcCCCEEEEEEEcCCCHHHHHHHHHHHH
Confidence            68899999999999999888888888999999988887776543

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.60  E-value=2e-15  Score=110.19  Aligned_cols=104  Identities=15%  Similarity=0.274  Sum_probs=82.5

Q ss_pred             cEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc---------------------
Q 026412           25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD---------------------   83 (239)
Q Consensus        25 v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~---------------------   83 (239)
                      +...+++.+.-...++|+++|.|||+||++|++..|.+.++.++++.. ++.+..|..+                     
T Consensus         8 l~~~~~~~~~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~   86 (143)
T d2fy6a1           8 LKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFS-SANLITVASPGFLHEKKDGDFQKWYAGLNYP   86 (143)
T ss_dssp             CEETTSCBGGGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGT-TSEEEEEECTTSTTCCCTTHHHHHHTTSCCT
T ss_pred             eECCCCCEeeHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhccC-CcEEEEEeeeecccccchhhhhhhhhhcCCc
Confidence            444555544444467899999999999999999999999999988644 4555555432                     


Q ss_pred             -------cchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHh
Q 026412           84 -------KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus        84 -------~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~  129 (239)
                             .+..+++.|++.++|+++++++.|+....+.|..+.+++.++|++.
T Consensus        87 ~~~~~~D~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~~  139 (143)
T d2fy6a1          87 KLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRDP  139 (143)
T ss_dssp             TSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCT
T ss_pred             ccccccccchHHHHHcCCCccCEEEEECCCCEEEEEEECCCCHHHHHHHHHHH
Confidence                   1237789999999999999988878778889999999999999864

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.60  E-value=2.7e-15  Score=108.28  Aligned_cols=101  Identities=21%  Similarity=0.382  Sum_probs=76.7

Q ss_pred             cEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc---------------------
Q 026412           25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD---------------------   83 (239)
Q Consensus        25 v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~---------------------   83 (239)
                      +..++++++.-.--++|+++|.||++||++|+...|.+.++++.++   ++.++.|+.+                     
T Consensus        10 ~~~~~G~~~~l~~~~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~---~~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l   86 (134)
T d1zzoa1          10 AKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP---EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQL   86 (134)
T ss_dssp             EEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSCHHHHHHHHHHTTCTTSEEE
T ss_pred             EEcCCCCEEeHHHhCCCEEEEEecccccCcccccchhhHHHHhhhc---ccccccccccccchhHHHHHHhcCCcceeEE
Confidence            3445554443332368999999999999999999999999999985   3444444332                     


Q ss_pred             --cchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHh
Q 026412           84 --KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEK  129 (239)
Q Consensus        84 --~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~  129 (239)
                        .+..+.+.|++.++|++++++++|+. ..+.|..+.+++.+.|++.
T Consensus        87 ~D~~~~~~~~~~v~~~P~~~iiD~~G~i-~~~~g~~~~~~l~~~i~~L  133 (134)
T d1zzoa1          87 ADTDGSVWANFGVTQQPAYAFVDPHGNV-DVVRGRMSQDELTRRVTAL  133 (134)
T ss_dssp             ECTTCHHHHHTTCCSSSEEEEECTTCCE-EEEESCCCHHHHHHHHHHH
T ss_pred             eeccchHHHhcCCCccCeEEEECCCCeE-EEEECCCCHHHHHHHHHhh
Confidence              12378899999999999999877664 4467889999999998765

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=9.3e-16  Score=119.64  Aligned_cols=102  Identities=21%  Similarity=0.276  Sum_probs=82.5

Q ss_pred             CCcEEcC-hhhHHHHh---cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCC
Q 026412           23 DDVVVLT-EDNFEKEV---GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFP   98 (239)
Q Consensus        23 ~~v~~l~-~~~f~~~~---~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P   98 (239)
                      ..+.+++ .++|.+.+   .++.+|+|+||+|||++|+.+.|.+..+|..|+   ++.|++||++..+ +..+|++.++|
T Consensus        99 G~v~~i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~---~vkF~ki~~~~~~-~~~~~~i~~lP  174 (217)
T d2trcp_          99 GFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP---MVKFCKIRASNTG-AGDRFSSDVLP  174 (217)
T ss_dssp             CSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT---TSEEEEEEHHHHT-CSTTSCGGGCS
T ss_pred             CeEEEcCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChhhhhhhHHHHhhhcc---cceEEEEccccch-hHHhCCCCCCC
Confidence            4677885 68898888   234579999999999999999999999999986   7999999998764 56899999999


Q ss_pred             eEEEEeCCCcCccccCC-------CCCHHHHHHHHHHh
Q 026412           99 TLKFFPKGNKDGEEYGG-------GRDLEDFVSFINEK  129 (239)
Q Consensus        99 t~~~~~~g~~~~~~~~g-------~~~~~~l~~~l~~~  129 (239)
                      |+++|++| .....+.|       ..+.+.+..||.+.
T Consensus       175 tl~~yk~G-~~v~~~vg~~~~~g~~~~~~~lE~~L~~~  211 (217)
T d2trcp_         175 TLLVYKGG-ELISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             EEEEEETT-EEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             eEEEEECC-EEEEEEECccccccccCCHHHHHHHHHHc
Confidence            99999988 44444433       24678888887653

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.58  E-value=6.7e-15  Score=106.25  Aligned_cols=100  Identities=20%  Similarity=0.380  Sum_probs=77.0

Q ss_pred             EEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc---------------------
Q 026412           26 VVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------   84 (239)
Q Consensus        26 ~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~---------------------   84 (239)
                      ..++++.+.-.--++|+++|.||++||++|+...|.+.+++..++   ++.++.|+.++                     
T Consensus        10 ~~~~G~~~~l~~~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~---~v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d   86 (134)
T d1lu4a_          10 TTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP---AVTFVGIATRADVGAMQSFVSKYNLNFTNLND   86 (134)
T ss_dssp             EBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT---TSEEEEEECSSCHHHHHHHHHHHTCCSEEEEC
T ss_pred             ECCCCCEEcHHHhCCCEEEEEEeecccCCceecchhHHHHhhhhc---cccccccccccchhhhhhhhhhhccccceeeC
Confidence            344555554332468999999999999999999999999998764   57777776542                     


Q ss_pred             -chhHHHHcCCCCCCeEEEEeCCCcCc--cccCCCCCHHHHHHHHHH
Q 026412           85 -YKDLAEKYGVSGFPTLKFFPKGNKDG--EEYGGGRDLEDFVSFINE  128 (239)
Q Consensus        85 -~~~l~~~~~i~~~Pt~~~~~~g~~~~--~~~~g~~~~~~l~~~l~~  128 (239)
                       ...+++.|++.++|++++++++|+..  ....|..+.+++.+.|++
T Consensus        87 ~~~~~~~~~~v~~~P~~~lid~~G~i~~v~~~~g~~~~~~l~~~l~~  133 (134)
T d1lu4a_          87 ADGVIWARYNVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAA  133 (134)
T ss_dssp             TTSHHHHHTTCCSSSEEEEECTTSCEEEECCSSSCCCHHHHHHHHHH
T ss_pred             chHHHHHHcCCCcCCEEEEEeCCCeEEEEeccCCCCCHHHHHHHHHc
Confidence             23688899999999999998776543  344678899999988864

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=5.1e-15  Score=106.98  Aligned_cols=83  Identities=19%  Similarity=0.329  Sum_probs=63.5

Q ss_pred             HHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHc-CCCCCCeEEEEeCCCcCcc
Q 026412           33 FEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKY-GVSGFPTLKFFPKGNKDGE  111 (239)
Q Consensus        33 f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~-~i~~~Pt~~~~~~g~~~~~  111 (239)
                      +.....++|+++|.|||+||++|+.+.|.+.+..+......+++.+.||++.....+..+ ...++|+++++.++|+...
T Consensus        18 l~~A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~~~~~Pt~~~~d~~G~~~~   97 (135)
T d1sena_          18 KKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKVHP   97 (135)
T ss_dssp             HHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSCBCT
T ss_pred             HHHHHHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcCHHHHHHHhhcccceeEEEECCCCeEEE
Confidence            444447799999999999999999999998766654443457999999998777666544 4446899999987766655


Q ss_pred             ccCC
Q 026412          112 EYGG  115 (239)
Q Consensus       112 ~~~g  115 (239)
                      .+.|
T Consensus        98 ~~~g  101 (135)
T d1sena_          98 EIIN  101 (135)
T ss_dssp             TCCC
T ss_pred             EecC
Confidence            5555

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.55  E-value=9e-15  Score=106.84  Aligned_cols=88  Identities=17%  Similarity=0.305  Sum_probs=70.9

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeC-----------------------ccchhHHHHcCCC
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA-----------------------DKYKDLAEKYGVS   95 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~-----------------------~~~~~l~~~~~i~   95 (239)
                      ++|+++|+||++||++|+...|.+.++.+.+.    +.+..|..                       |.+..+.+.|++.
T Consensus        30 kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  105 (144)
T d1knga_          30 KGKVSLVNVWASWCVPCHDEAPLLTELGKDKR----FQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVY  105 (144)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTCTT----SEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCC
T ss_pred             CCCEEEEEeeccccccccccCchhhhhhhccC----ceeEEEEeeechHHHHHHHHHcCCccccccccccchhhhhcCcc
Confidence            57999999999999999999999998866543    33333322                       1234788999999


Q ss_pred             CCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412           96 GFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus        96 ~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      ++|+++++++.|+....+.|..+.+++.+.|.+.+
T Consensus       106 ~~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~~l  140 (144)
T d1knga_         106 GVPETFVVGREGTIVYKLVGPITPDNLRSVLLPQM  140 (144)
T ss_dssp             SSCEEEEECTTSBEEEEEESCCCHHHHHHTHHHHH
T ss_pred             ccceEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHH
Confidence            99999999888788888899999999998887654

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.54  E-value=1.6e-14  Score=105.46  Aligned_cols=72  Identities=18%  Similarity=0.257  Sum_probs=60.8

Q ss_pred             cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc------------------------hhHHHHcC
Q 026412           38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY------------------------KDLAEKYG   93 (239)
Q Consensus        38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~------------------------~~l~~~~~   93 (239)
                      -++|+++|+|||+||++|++..|.+.++.++++.+.++.++.|+.|..                        ..+.+.|+
T Consensus        26 l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~y~  105 (144)
T d1i5ga_          26 LAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFD  105 (144)
T ss_dssp             GTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTT
T ss_pred             cCCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHHHHHCC
Confidence            368999999999999999999999999999998767788888877632                        14778899


Q ss_pred             CCCCCeEEEEeCC-CcC
Q 026412           94 VSGFPTLKFFPKG-NKD  109 (239)
Q Consensus        94 i~~~Pt~~~~~~g-~~~  109 (239)
                      |.++|+++++++. |+.
T Consensus       106 v~~iPt~~lid~~~G~v  122 (144)
T d1i5ga_         106 VKSIPTLVGVEADSGNI  122 (144)
T ss_dssp             CCSSSEEEEEETTTCCE
T ss_pred             CCCcCEEEEEeCCCCEE
Confidence            9999999999863 443

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.6e-14  Score=105.70  Aligned_cols=105  Identities=14%  Similarity=0.164  Sum_probs=79.7

Q ss_pred             hhHHHHh----cCCCcEEEEEECCCChHHhhHhHHH---HHHHHHccCCCCeEEEEEeCcc--chhHHHHcCCCCCCeEE
Q 026412           31 DNFEKEV----GQDRGALVEFYAPWCGHCKNLAPTY---EKVAAAFTLEDDVVVANLDADK--YKDLAEKYGVSGFPTLK  101 (239)
Q Consensus        31 ~~f~~~~----~~~k~vlV~F~a~wC~~C~~~~~~~---~~~a~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~~  101 (239)
                      .+|++.+    .++|+++|+||++||++|+.|....   .++.+.+.  .+++++.+|.+.  +..++++|++.++|+++
T Consensus        29 ~~~~~A~~~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~--~~fV~~~v~~~~~e~~~~~~~y~v~~~Pti~  106 (147)
T d2dlxa1          29 GSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIR--EHFIFWQVYHDSEEGQRYIQFYKLGDFPYVS  106 (147)
T ss_dssp             SCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHH--HTEEEEEEESSSHHHHHHHHHHTCCSSSEEE
T ss_pred             CCHHHHHHHHHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHh--hheeEeeecccchhhhhhhhheecCceeEEE
Confidence            3455554    6689999999999999999997643   33444432  368899999874  47899999999999999


Q ss_pred             EEeC-CCcCccccCCCCCHHHHHHHHHHhhCCCCCCCC
Q 026412          102 FFPK-GNKDGEEYGGGRDLEDFVSFINEKCGTSRDGKG  138 (239)
Q Consensus       102 ~~~~-g~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~  138 (239)
                      ++.+ +|+.. +..|..++++++..|++.++.+....|
T Consensus       107 ~idp~~ge~v-~~~~~~~~~~fl~~L~~fl~~~~~~~~  143 (147)
T d2dlxa1         107 ILDPRTGQKL-VEWHQLDVSSFLDQVTGFLGEHGQLDG  143 (147)
T ss_dssp             EECTTTCCCC-EEESSCCHHHHHHHHHHHHHHTCSCSS
T ss_pred             EEeCCCCeEe-cccCCCCHHHHHHHHHHHHhhCCCCcC
Confidence            9975 44444 445668999999999998876655544

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.53  E-value=3.6e-14  Score=103.48  Aligned_cols=99  Identities=15%  Similarity=0.280  Sum_probs=78.9

Q ss_pred             cChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc------------------------
Q 026412           28 LTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD------------------------   83 (239)
Q Consensus        28 l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~------------------------   83 (239)
                      ++.+.......++++++|+||++||++|+...|.+.++.+.++.  ++.++.|+.+                        
T Consensus        17 ~ng~~~~~~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~--~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p~   94 (143)
T d2b5xa1          17 LNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQD--QLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPI   94 (143)
T ss_dssp             ESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCE
T ss_pred             cCCeEecHHHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhc--cccceeEEeeccccccchhhhhhHHHhhccCccc
Confidence            45554555556789999999999999999999999999999874  4555555432                        


Q ss_pred             ---cchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHH
Q 026412           84 ---KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE  128 (239)
Q Consensus        84 ---~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~  128 (239)
                         ....+++.|++.++|+++++++.|.....+.|..+.+.+.+.|++
T Consensus        95 ~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~  142 (143)
T d2b5xa1          95 FVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNR  142 (143)
T ss_dssp             EECSSCHHHHHTCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHH
T ss_pred             cccCccchHHHcCCCcCCEEEEECCCCEEEEEEECCCCHHHHHHHHHh
Confidence               112588899999999999998877777788899898999888875

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.50  E-value=5.1e-14  Score=102.77  Aligned_cols=71  Identities=20%  Similarity=0.442  Sum_probs=60.4

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc------------------------hhHHHHcCC
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY------------------------KDLAEKYGV   94 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~------------------------~~l~~~~~i   94 (239)
                      ++|+++|+|||+||++|++..|.+.++.+++..+.++.++.|+.++.                        ..+.+.|+|
T Consensus        27 ~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~v  106 (144)
T d1o73a_          27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHHHcCC
Confidence            58999999999999999999999999999997666788888876632                        147889999


Q ss_pred             CCCCeEEEEeCC-CcC
Q 026412           95 SGFPTLKFFPKG-NKD  109 (239)
Q Consensus        95 ~~~Pt~~~~~~g-~~~  109 (239)
                      .++|+++++++. |+.
T Consensus       107 ~~~Pt~~lID~~~G~I  122 (144)
T d1o73a_         107 ESIPTLITINADTGAI  122 (144)
T ss_dssp             CSSSEEEEEETTTCCE
T ss_pred             CcCCEEEEEECCCCEE
Confidence            999999999864 443

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.47  E-value=7.6e-14  Score=100.90  Aligned_cols=90  Identities=19%  Similarity=0.371  Sum_probs=75.9

Q ss_pred             cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----------------------chhHHHHcCCC
Q 026412           38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------YKDLAEKYGVS   95 (239)
Q Consensus        38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----------------------~~~l~~~~~i~   95 (239)
                      -.+++++|.||++||++|+...|.+.++.+.+... ++.++.|+.++                      ...+++.|++.
T Consensus        23 ~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  101 (137)
T d1st9a_          23 LKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQ-GVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVS  101 (137)
T ss_dssp             GTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG-TEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHHHHTTCC
T ss_pred             hCCCEEEEEEeeccccceeeccccccccccccccc-ccccccccccchhhhHHHHHHHcCCCccccccccchhhhhhhcc
Confidence            36789999999999999999999999999998754 57777776542                      23688899999


Q ss_pred             CCCeEEEEeCCCcCccccCCCCCHHHHHHHHHH
Q 026412           96 GFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE  128 (239)
Q Consensus        96 ~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~  128 (239)
                      ++|++++++++|+...++.|..+.+.+.++++.
T Consensus       102 ~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~  134 (137)
T d1st9a_         102 PLPTTFLINPEGKVVKVVTGTMTESMIHDYMNL  134 (137)
T ss_dssp             SSCEEEEECTTSEEEEEEESCCCHHHHHHHHHH
T ss_pred             ccceEEEECCCCEEEEEEECCCCHHHHHHHHHh
Confidence            999999999888888888999999888887754

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.43  E-value=3.6e-13  Score=98.02  Aligned_cols=68  Identities=19%  Similarity=0.329  Sum_probs=59.3

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc------------------------hhHHHHcCC
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY------------------------KDLAEKYGV   94 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~------------------------~~l~~~~~i   94 (239)
                      .+|+++|+||++||++|+...|.+.++.+++....++.++.|+.++.                        ..+.+.|+|
T Consensus        25 ~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~v  104 (144)
T d1o8xa_          25 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  104 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchhhHHHHcCC
Confidence            58999999999999999999999999999997776788888876532                        268889999


Q ss_pred             CCCCeEEEEeCC
Q 026412           95 SGFPTLKFFPKG  106 (239)
Q Consensus        95 ~~~Pt~~~~~~g  106 (239)
                      +++|++++++++
T Consensus       105 ~~~Pt~~liD~~  116 (144)
T d1o8xa_         105 ESIPTLIGVDAD  116 (144)
T ss_dssp             CSSSEEEEEETT
T ss_pred             CcCCEEEEEeCC
Confidence            999999999864

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=7.3e-14  Score=95.44  Aligned_cols=86  Identities=13%  Similarity=0.205  Sum_probs=71.3

Q ss_pred             cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCC
Q 026412           38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGR  117 (239)
Q Consensus        38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~  117 (239)
                      ++..++++.||++||++|+.+.|.++++...+.    ..++.+|.+.++++.++|+++ +|++++  +| +.  ...|..
T Consensus        13 ~~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~----~~~v~vd~~~~~~l~~~y~~~-VPvl~i--dg-~~--~~~g~~   82 (100)
T d1wjka_          13 NRALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI----LQEVDITLPENSTWYERYKFD-IPVFHL--NG-QF--LMMHRV   82 (100)
T ss_dssp             CCCCCEEEEEECSSCHHHHHHHHHTSTTSSSSE----EEEEETTSSTTHHHHHHSSSS-CSEEEE--SS-SE--EEESSC
T ss_pred             CCCCCEEEEEECCCCCChHHHHHHHHHhhhhcc----eEEEecccccCHHHHHHhccc-CCceee--cC-ce--EEeCCC
Confidence            456789999999999999999999998877663    678889999999999999997 998754  44 22  245788


Q ss_pred             CHHHHHHHHHHhhCCC
Q 026412          118 DLEDFVSFINEKCGTS  133 (239)
Q Consensus       118 ~~~~l~~~l~~~~~~~  133 (239)
                      +.+.|.++|++..+.+
T Consensus        83 d~~~L~~~L~~l~~~~   98 (100)
T d1wjka_          83 NTSKLEKQLRKLSGPS   98 (100)
T ss_dssp             CHHHHHHHHHSSSCSS
T ss_pred             CHHHHHHHHHHHhcCC
Confidence            9999999999877654

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.30  E-value=4e-12  Score=95.57  Aligned_cols=106  Identities=19%  Similarity=0.278  Sum_probs=75.7

Q ss_pred             cEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc--cc---h-------------
Q 026412           25 VVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD--KY---K-------------   86 (239)
Q Consensus        25 v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~--~~---~-------------   86 (239)
                      +..++++.+.-.--++|+++|.||++||++|+...+.+.++.+.+... ++.++.|.++  ..   .             
T Consensus        41 l~d~~G~~v~L~~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~-~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~  119 (176)
T d1jfua_          41 FEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGP-NFEVVAINIDTRDPEKPKTFLKEANLTRLGY  119 (176)
T ss_dssp             EECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBT-TEEEEEEECCCSCTTHHHHHHHHTTCCTTCC
T ss_pred             EECCCcCEEeHHHhCCCEEEEEeccCcccchHHHHHhhhhcccccccc-ccccccccccccchhhhhhhHhhhCCcceee
Confidence            334555544422246799999999999999999999999999888643 4555555443  11   0             


Q ss_pred             ----------hHHHHcCCCCCCeEEEEeCCCcCccccCCC--CCHHHHHHHHHHhhC
Q 026412           87 ----------DLAEKYGVSGFPTLKFFPKGNKDGEEYGGG--RDLEDFVSFINEKCG  131 (239)
Q Consensus        87 ----------~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~--~~~~~l~~~l~~~~~  131 (239)
                                .+...|++.++|++++++++|+...++.|.  .+.+++.++|+..+|
T Consensus       120 ~~d~~~~~~~~~~~~~~v~~~P~~~lID~~G~I~~~~~G~~~~~~~e~~~~l~al~~  176 (176)
T d1jfua_         120 FNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATG  176 (176)
T ss_dssp             EECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHHC
T ss_pred             eecchhHHHHHHhhhccCCCCCeEEEEcCCCEEEEEEECCCCCChHHHHHHHHHhcC
Confidence                      223345677899999998887777777775  456889999988765

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.29  E-value=7.9e-12  Score=94.86  Aligned_cols=91  Identities=16%  Similarity=0.192  Sum_probs=68.5

Q ss_pred             cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc-----------------------------cchhH
Q 026412           38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD-----------------------------KYKDL   88 (239)
Q Consensus        38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~-----------------------------~~~~l   88 (239)
                      -++++++|.||++||++|+...|.+.++++.|+.  ++.++.|+..                             ....+
T Consensus        30 ~kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~--~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~~~~~  107 (187)
T d2cvba1          30 FHEPLLAVVFMCNHCPYVKGSIGELVALAERYRG--KVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEV  107 (187)
T ss_dssp             CCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTT--TEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHH
T ss_pred             hCCCeEEEEEeCCCCccchhhhhhhhhhhhhccc--cceeeeeeccccccccccchHHHHHHHHHhCCcceeeechhhhh
Confidence            3578999999999999999999999999999963  4666666431                             12378


Q ss_pred             HHHcCCCCCCeEEEEeCCCcCccccCCC----------CCHHHHHHHHHHhhCC
Q 026412           89 AEKYGVSGFPTLKFFPKGNKDGEEYGGG----------RDLEDFVSFINEKCGT  132 (239)
Q Consensus        89 ~~~~~i~~~Pt~~~~~~g~~~~~~~~g~----------~~~~~l~~~l~~~~~~  132 (239)
                      ++.|++.++|+++++++.|+.  .|.|.          .+...+.+.|+..+..
T Consensus       108 ~~~~~v~~~P~~~liD~~G~i--~y~G~idd~~~~~~~~~~~~L~~Ai~~ll~g  159 (187)
T d2cvba1         108 AKAYRALRTPEVFLFDERRLL--RYHGRVNDNPKDPSKVQSHDLEAAIEALLRG  159 (187)
T ss_dssp             HHHTTCCEESEEEEECTTCBE--EEEECSSSCTTCGGGCCCCHHHHHHHHHHTT
T ss_pred             cccccccceeeEEEEcCCCeE--EEEeeecCCCCCCCCCCHHHHHHHHHHHHcC
Confidence            999999999999999887653  34443          2334566666666543

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.22  E-value=2.5e-11  Score=90.29  Aligned_cols=86  Identities=12%  Similarity=0.087  Sum_probs=66.3

Q ss_pred             EcChhhHHHHhc-CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCC---CCCCeEEE
Q 026412           27 VLTEDNFEKEVG-QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGV---SGFPTLKF  102 (239)
Q Consensus        27 ~l~~~~f~~~~~-~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i---~~~Pt~~~  102 (239)
                      .+++...+++.. +++.+++.||++|||+|++..|.+.++++.++   ++.+..|+.+.+++...+|..   ..+|.+++
T Consensus        40 ~l~~~~~~~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~---~~~~~~i~~d~~~~~~~~~~~~~~~~~p~~~~  116 (166)
T d1z6na1          40 GLPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP---NIELAIISKGRAEDDLRQRLALERIAIPLVLV  116 (166)
T ss_dssp             CCCHHHHHHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT---TEEEEEECHHHHHHHTTTTTTCSSCCSSEEEE
T ss_pred             cccHHHHHHHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCC---CCcEEEEECccCHHHHHHHHHhccccccceee
Confidence            355666665553 56788999999999999999999999999875   677888888888888888844   46888888


Q ss_pred             EeCCCcCccccCC
Q 026412          103 FPKGNKDGEEYGG  115 (239)
Q Consensus       103 ~~~g~~~~~~~~g  115 (239)
                      ..++......+.+
T Consensus       117 ~d~~~~~~~~~~~  129 (166)
T d1z6na1         117 LDEEFNLLGRFVE  129 (166)
T ss_dssp             ECTTCCEEEEEES
T ss_pred             cCccchhcccccc
Confidence            7666544444443

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=98.80  E-value=1.2e-08  Score=74.63  Aligned_cols=99  Identities=15%  Similarity=0.237  Sum_probs=71.5

Q ss_pred             HHHHhcCCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc---------------------chhHHH
Q 026412           33 FEKEVGQDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------YKDLAE   90 (239)
Q Consensus        33 f~~~~~~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~---------------------~~~l~~   90 (239)
                      +.....++|++++.|| ++||++|....+.+.++.+.+... .+.++.+..+.                     +..+++
T Consensus        23 Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~  101 (160)
T d2cx4a1          23 LYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKA-NAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIK  101 (160)
T ss_dssp             HHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTT-CCEEEEEESSCHHHHHHHHHHHTCSSEEEECTTSHHHH
T ss_pred             hHHHhhCCCEEEEEecccccCCchhhhhhhhhccccccccc-ccccccccccchhhhhhhcccceeeEEEeecCCcchHH
Confidence            3444567899999998 999999999999999998888754 46666665432                     346788


Q ss_pred             HcCCC----------CCCeEEEEeCCCcCccccC-----CCCCHHHHHHHHHHhhCC
Q 026412           91 KYGVS----------GFPTLKFFPKGNKDGEEYG-----GGRDLEDFVSFINEKCGT  132 (239)
Q Consensus        91 ~~~i~----------~~Pt~~~~~~g~~~~~~~~-----g~~~~~~l~~~l~~~~~~  132 (239)
                      .||+.          ..|++++++++|+....+.     +..+.+++.+-+++..+.
T Consensus       102 ~~gv~~~~~~~~~~~~~~~~flId~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~e  158 (160)
T d2cx4a1         102 LYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIAGE  158 (160)
T ss_dssp             HTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSSTTCCCCHHHHHHHHHHHHTT
T ss_pred             HcCccccccccccccceeeEEEEcCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHccc
Confidence            88873          4688888877766544332     335678888888877653

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.70  E-value=4.5e-08  Score=72.17  Aligned_cols=82  Identities=17%  Similarity=0.141  Sum_probs=63.1

Q ss_pred             CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc----------------------------------
Q 026412           40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY----------------------------------   85 (239)
Q Consensus        40 ~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~----------------------------------   85 (239)
                      .+..++.|+.+.||||+++.|.+.++...+.....+.+.......+                                  
T Consensus        24 a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (172)
T d1z6ma1          24 APVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQD  103 (172)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECCCCSTTTHHHHHHHTTCCTTCHHHHHHHHHHHHHTHH
T ss_pred             CCEEEEEEECCCCHhHHHHHHHHhhhhhhhccccceeeeeccccccchhhHHHHHHHHHHHHccchhHHHHHHHHHHhcc
Confidence            4557999999999999999999999998887666666654442210                                  


Q ss_pred             --------------------------------hhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHH
Q 026412           86 --------------------------------KDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFIN  127 (239)
Q Consensus        86 --------------------------------~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~  127 (239)
                                                      ...++++||+++||+++  +|    ..+.|..+.+++.++|+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~gI~gTPt~~I--ng----~~~~g~~~~~~~~~~id  171 (172)
T d1z6ma1         104 EWGNLTLEEVATYAEKNLGLKEQKDATLVSAVIAEANAAHIQFVPTIII--GE----YIFDESVTEEELRGYIE  171 (172)
T ss_dssp             HHTTSCHHHHHHHHHHTSCCCCCCCHHHHHHHHHHHHHHTCCSSCEEEE--TT----EEECTTCCHHHHHHHHT
T ss_pred             ccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHcCCCcCCEEEE--CC----EEecCCCCHHHHHHHHc
Confidence                                            14556799999999765  55    24689999999999885

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=98.64  E-value=1.4e-07  Score=69.94  Aligned_cols=89  Identities=12%  Similarity=0.289  Sum_probs=67.4

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc---------------------------------
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY---------------------------------   85 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~---------------------------------   85 (239)
                      ..++.+|.|....||||+++.+.+..+.+.+.....+....+....+                                 
T Consensus        17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (181)
T d1beda_          17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIALEVEDKMVPVMFNRIHTL   96 (181)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEECSSSSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred             CCCCEEEEEECCCCccchhhhhhhhhHhhhcccccceeEEeccccccccHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence            56789999999999999999999999999987555555554443211                                 


Q ss_pred             ----------------------------------------hhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHH
Q 026412           86 ----------------------------------------KDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSF  125 (239)
Q Consensus        86 ----------------------------------------~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~  125 (239)
                                                              ...++++||+++||+++  +| +......+..+.+.+.+-
T Consensus        97 ~~~~~~~~~l~~~~~~~gvd~~~~~~~~~~~~~~~~v~~~~~~~~~~gi~gTPt~~I--nG-k~~v~~~~~~~~~~l~~~  173 (181)
T d1beda_          97 RKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVRRFDKQFQDSGLTGVPAVVV--NN-RYLVQGQSVKSLDEYFDL  173 (181)
T ss_dssp             CCCCCSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHTCCSSSEEEE--TT-TEEECGGGCCSHHHHHHH
T ss_pred             ccccchHHHHHHHHHHhcCCHHHHHHHHhChHHHHHHHHHHHHHHHhCCccccEEEE--CC-EEeeCCCCCCCHHHHHHH
Confidence                                                    05677999999999876  55 444556677888888888


Q ss_pred             HHHhh
Q 026412          126 INEKC  130 (239)
Q Consensus       126 l~~~~  130 (239)
                      |+.++
T Consensus       174 i~~L~  178 (181)
T d1beda_         174 VNYLL  178 (181)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87654

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.63  E-value=6.6e-08  Score=70.04  Aligned_cols=83  Identities=20%  Similarity=0.292  Sum_probs=61.8

Q ss_pred             cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeC-----------------------------------
Q 026412           38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDA-----------------------------------   82 (239)
Q Consensus        38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~-----------------------------------   82 (239)
                      .+.+.+++.|+-+.||+|+++++.+..+.+..   ..+.+.....                                   
T Consensus        24 ~~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~  100 (150)
T d1t3ba1          24 KNEKHVVTVFMDITCHYCHLLHQQLKEYNDLG---ITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKE  100 (150)
T ss_dssp             TTCSEEEEEEECTTCHHHHHHHTTHHHHHHTT---EEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSS
T ss_pred             CCCCEEEEEEECCCCHHHHHHhHHHHHHhccC---ceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccccc
Confidence            34677899999999999999999999887642   2333332211                                   


Q ss_pred             -------ccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHH
Q 026412           83 -------DKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINE  128 (239)
Q Consensus        83 -------~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~  128 (239)
                             ..+..+++++||+|+||+++ .+|    ..+.|..+.+.|.++|++
T Consensus       101 ~~~~~~i~~~~~la~~lGv~GTPt~~~-~nG----~~i~G~~~~~~l~~~l~~  148 (150)
T d1t3ba1         101 VKTPNIVKKHYELGIQFGVRGTPSIVT-STG----ELIGGYLKPADLLRALEE  148 (150)
T ss_dssp             CCCSSHHHHHHHHHHHHTCCSSCEEEC-TTS----CCCCSCCCHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHhcCcCCCCEEEE-cCC----cEecCCCCHHHHHHHHHh
Confidence                   11347889999999999754 344    356899999999999976

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.62  E-value=6e-08  Score=70.74  Aligned_cols=85  Identities=21%  Similarity=0.293  Sum_probs=61.8

Q ss_pred             cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEe------------------------------------
Q 026412           38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLD------------------------------------   81 (239)
Q Consensus        38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd------------------------------------   81 (239)
                      .+.+.+++.|+.+.||+|++++|.+.++.+..   ..+.+...-                                    
T Consensus        24 ~~ak~tIv~FsD~~CpyC~~~~~~l~~~~~~~---~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  100 (156)
T d1eeja1          24 PQEKHVITVFTDITCGYCHKLHEQMADYNALG---ITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAP  100 (156)
T ss_dssp             TTCCEEEEEEECTTCHHHHHHHTTHHHHHHTT---EEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCC
T ss_pred             CCCCEEEEEEeCCCCHHHHHHHHHHHHhhccC---ceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccccch
Confidence            34678999999999999999999999886532   122222111                                    


Q ss_pred             ------CccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412           82 ------ADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus        82 ------~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                            +..+..+++++||+|+|+++ +.+|    ..+.|..+.+.|.++|++..
T Consensus       101 ~~~~~~i~~~~~la~~lgv~GTPt~~-~~nG----~~v~G~~~~e~l~~~i~~~~  150 (156)
T d1eeja1         101 ASCDVDIADHYALGVQLGVSGTPAVV-LSNG----TLVPGYQPPKEMKEFLDEHQ  150 (156)
T ss_dssp             CCCSCCHHHHHHHHHHHTCCSSSEEE-CTTS----CEEESCCCHHHHHHHHHHHH
T ss_pred             hhhcchHHHHHHHHHHcCCcCCCEEE-EeCC----eEecCCCCHHHHHHHHHHHH
Confidence                  01234789999999999964 4444    24579999999999998753

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.61  E-value=6e-08  Score=71.67  Aligned_cols=90  Identities=14%  Similarity=0.231  Sum_probs=67.0

Q ss_pred             cCCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-------------------------chhHHHH
Q 026412           38 GQDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------------------------YKDLAEK   91 (239)
Q Consensus        38 ~~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~   91 (239)
                      -.+|++++.|| +.|||+|....+.+.+..+.+... ++.++.|..+.                         +..+++.
T Consensus        42 ~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~-g~~vv~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~  120 (169)
T d2bmxa1          42 HPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDR-DAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQA  120 (169)
T ss_dssp             STTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHH
T ss_pred             HCCCeEEEEEecCCCCcccccccccccccccccccc-CcceeeccccchhhhhhhcccccccccceEEEEeccHHHHHHH
Confidence            35788999998 999999999999999999999754 46677665542                         3478889


Q ss_pred             cCC-----CCCCeEEEEeCCCcCcccc--C--CCCCHHHHHHHHHH
Q 026412           92 YGV-----SGFPTLKFFPKGNKDGEEY--G--GGRDLEDFVSFINE  128 (239)
Q Consensus        92 ~~i-----~~~Pt~~~~~~g~~~~~~~--~--g~~~~~~l~~~l~~  128 (239)
                      ||+     ...|+.+++++.|.....+  .  -.++.+++.+.|+.
T Consensus       121 ygv~~~~~~~~r~~fvID~~G~I~~~~~~~~~~~~~~~evl~~l~a  166 (169)
T d2bmxa1         121 AGVLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDA  166 (169)
T ss_dssp             HTCBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             cCCCccCCccceeEEEEcCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence            998     5678888887666653322  2  13677888887764

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=98.52  E-value=7.5e-07  Score=62.89  Aligned_cols=106  Identities=11%  Similarity=0.154  Sum_probs=86.5

Q ss_pred             CCcEEcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCC--CCCeE
Q 026412           23 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVS--GFPTL  100 (239)
Q Consensus        23 ~~v~~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~--~~Pt~  100 (239)
                      .-+.+++.+|+......++++++.|+.+. .....+...+.++|++++  +.+.|+.+|.+++....+.||+.  .+|.+
T Consensus         6 PLv~e~~~~n~~~~~~~~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~--~ki~Fv~vd~~~~~~~l~~~gl~~~~~P~~   82 (133)
T d2djka1           6 PLIGEIGPETYSDYMSAGIPLAYIFAETA-EERKELSDKLKPIAEAQR--GVINFGTIDAKAFGAHAGNLNLKTDKFPAF   82 (133)
T ss_dssp             CCSEECCHHHHHHHHHTTSCEEEEECSCS-SSHHHHHHHHHHHHHSST--TTSEEEEECTTTTGGGTTTTTCCSSSSSEE
T ss_pred             CceeccChhhHHHHhcCCCCEEEEEeCCc-hHHHHHHHHHHHHHHHhc--CceEEEEEeHHHhHHHHHHhcCCcccCCcE
Confidence            45788999999999988899999888765 356788999999999986  57999999999888888999985  58999


Q ss_pred             EEEeCCCcCcccc--CCCCCHHHHHHHHHHhhC
Q 026412          101 KFFPKGNKDGEEY--GGGRDLEDFVSFINEKCG  131 (239)
Q Consensus       101 ~~~~~g~~~~~~~--~g~~~~~~l~~~l~~~~~  131 (239)
                      +++...+.....|  .+..+.+.+.+|+++...
T Consensus        83 ~i~~~~~~~~~~~~~~~~i~~~~i~~Fi~d~~~  115 (133)
T d2djka1          83 AIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVA  115 (133)
T ss_dssp             EEECTTTCCBCCCCSSSCCCHHHHHHHHHHHHH
T ss_pred             EEEEcCCCceecCCccccCCHHHHHHHHHHHHc
Confidence            9886554444444  456899999999998653

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.48  E-value=1.5e-07  Score=69.36  Aligned_cols=89  Identities=18%  Similarity=0.274  Sum_probs=64.9

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----------------------------chhHH
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA   89 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (239)
                      .+|++|+.|| +.||++|....+.+.+..+++... ++.++.|..+.                            ...++
T Consensus        32 ~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~-~~~v~~is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~  110 (167)
T d1e2ya_          32 KGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEI-NTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIA  110 (167)
T ss_dssp             TTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHSCGGGTCCCCCSSCEEECTTCHHH
T ss_pred             CCCeEEEEEcccccccccchhhHHHHHHHHHhhcC-ceEEEeecCCcHHhHHHHHhhHHHhcccccccccccccchhHHH
Confidence            5778999999 999999999999999999999754 57777776542                            23577


Q ss_pred             HHcCCC------CCCeEEEEeCCCcCccccC----CCCCHHHHHHHHHH
Q 026412           90 EKYGVS------GFPTLKFFPKGNKDGEEYG----GGRDLEDFVSFINE  128 (239)
Q Consensus        90 ~~~~i~------~~Pt~~~~~~g~~~~~~~~----g~~~~~~l~~~l~~  128 (239)
                      +.|++.      .+|+.+++++.|.....+.    ..++.+++++.|+.
T Consensus       111 ~~y~v~~~~~g~~~r~tfvID~~G~Ir~~~~~~~~~~~~~~evL~~l~a  159 (167)
T d1e2ya_         111 RAYGVLDEDSGVAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEA  159 (167)
T ss_dssp             HHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HHcCCCcccCCCceeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence            788772      3678888877766543332    23567777777654

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.45  E-value=6.8e-07  Score=65.83  Aligned_cols=82  Identities=17%  Similarity=0.227  Sum_probs=62.3

Q ss_pred             CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-----------------------------------
Q 026412           40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-----------------------------------   84 (239)
Q Consensus        40 ~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-----------------------------------   84 (239)
                      .+.+++.|+.+.||||+++.+.++++.+..    ++.+..++..-                                   
T Consensus        36 a~~tv~vF~D~~CP~C~~~~~~l~~l~~~~----~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~~~~  111 (169)
T d1v58a1          36 APVIVYVFADPFCPYCKQFWQQARPWVDSG----KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLN  111 (169)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHTT----SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCC
T ss_pred             CCEEEEEEECCCCcchHHHHHHHHHHHhcc----ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhccccc
Confidence            456799999999999999999998887653    46666554320                                   


Q ss_pred             ---------------chhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHHH
Q 026412           85 ---------------YKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSFI  126 (239)
Q Consensus        85 ---------------~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l  126 (239)
                                     +..+++++||+++|++++..+++ ....+.|..+.+.|.+.+
T Consensus       112 ~~~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g-~~~~~~G~~~~~~l~~il  167 (169)
T d1v58a1         112 VPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKEN-TLQQAVGLPDQKTLNIIM  167 (169)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTT-EEEEEESSCCHHHHHHHT
T ss_pred             ccchhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCC-CEEEecCCCCHHHHHHHh
Confidence                           12678899999999988877664 456678988888877654

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.43  E-value=4e-07  Score=66.20  Aligned_cols=49  Identities=16%  Similarity=0.124  Sum_probs=36.8

Q ss_pred             HHHHhcCCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc
Q 026412           33 FEKEVGQDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD   83 (239)
Q Consensus        33 f~~~~~~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~   83 (239)
                      +.....+++.+++.|| +.|||+|....+.+.+...++..  .+.++.|..+
T Consensus        26 l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~--~~~~~~is~d   75 (156)
T d2a4va1          26 LKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKE--YAAVFGLSAD   75 (156)
T ss_dssp             HHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTT--TCEEEEEESC
T ss_pred             eHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhh--ccceeeeccc
Confidence            4444455677777777 89999999999999999999963  3445566655

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.41  E-value=7.7e-07  Score=61.36  Aligned_cols=88  Identities=19%  Similarity=0.338  Sum_probs=69.4

Q ss_pred             CCcEEEEEEC--CCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc--cchhHHHHcCCCCCCeEEEEeCCCcCccccCC
Q 026412           40 DRGALVEFYA--PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD--KYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGG  115 (239)
Q Consensus        40 ~k~vlV~F~a--~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g  115 (239)
                      .++|-+.++.  ..|+.|..+...++++++.-   +.+.+...+.+  ++++++++|+|...|++.++.+|.....+|.|
T Consensus        21 ~~pV~l~~~~~~~~~~~~~e~~~ll~ela~lS---dki~~~~~~~~~~e~~~~~~~~~ver~Ps~~i~~~g~~~gIrF~G   97 (119)
T d1a8la1          21 VNPVKLIVFVRKDHCQYCDQLKQLVQELSELT---DKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDFGVRYFG   97 (119)
T ss_dssp             CSCEEEEEEECSSSCTTHHHHHHHHHHHHTTC---TTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTBCCSEEEES
T ss_pred             CCCEEEEEEecCCCchhHHHHHHHHHHHHhhC---CCeEEEEeccCcchhhhHHHhhccccCceEEEecCCcccceEEEe
Confidence            4555555443  56999999999999998764   35666666655  56789999999999999999887556789999


Q ss_pred             CCCHHHHHHHHHHhh
Q 026412          116 GRDLEDFVSFINEKC  130 (239)
Q Consensus       116 ~~~~~~l~~~l~~~~  130 (239)
                      -+.-++|..||....
T Consensus        98 iP~GhEf~SlilaIl  112 (119)
T d1a8la1          98 LPAGHEFAAFLEDIV  112 (119)
T ss_dssp             CCCTTHHHHHHHHHH
T ss_pred             ccCchhHHHHHHHHH
Confidence            999999999987654

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=98.35  E-value=3.4e-07  Score=67.34  Aligned_cols=88  Identities=15%  Similarity=0.166  Sum_probs=61.6

Q ss_pred             CCCcEEEEEECC-CChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-------------------------chhHHHHc
Q 026412           39 QDRGALVEFYAP-WCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------------------------YKDLAEKY   92 (239)
Q Consensus        39 ~~k~vlV~F~a~-wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~   92 (239)
                      .+|++++.||.. |||+|....+.+.+..+++... ++.++.|..|.                         +.++++.|
T Consensus        30 ~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~-g~~vv~IS~D~~~~~~~~~~~~~~~~~~~fpll~D~~~~v~~~y  108 (166)
T d1we0a1          30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKL-GVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQF  108 (166)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHT-TEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHT
T ss_pred             CCCeEEEEEecccCCcHHHHHHHHHHHHHHhhccc-ceEEEecccccHHHHHHHhhhhhhhcccccccccCcccHHHHHh
Confidence            468899999955 9999999999999999998743 57777777653                         23677788


Q ss_pred             CCC------CCCeEEEEeCCCcCccccCC----CCCHHHHHHHHH
Q 026412           93 GVS------GFPTLKFFPKGNKDGEEYGG----GRDLEDFVSFIN  127 (239)
Q Consensus        93 ~i~------~~Pt~~~~~~g~~~~~~~~g----~~~~~~l~~~l~  127 (239)
                      |+.      ..|+.+++++.|.....+.+    .++.+++.+.|+
T Consensus       109 gv~~~~~~~~~r~tfvID~~G~I~~~~i~~~~~~r~~~eil~~lk  153 (166)
T d1we0a1         109 DVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVK  153 (166)
T ss_dssp             TCEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHH
T ss_pred             CCCccccCcccceEEEECCCCcEEEEEEcCCCCCCCHHHHHHHHH
Confidence            774      35667778777665333322    245556555554

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=9.6e-07  Score=65.83  Aligned_cols=46  Identities=13%  Similarity=0.111  Sum_probs=40.1

Q ss_pred             cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc
Q 026412           38 GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK   84 (239)
Q Consensus        38 ~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~   84 (239)
                      -++|+++|.+||+||++|.+..|.++++.++|..+ .+.+..+.|++
T Consensus        22 ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~-g~~Il~fP~nq   67 (184)
T d2f8aa1          22 LRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPR-GLVVLGFPCNQ   67 (184)
T ss_dssp             GTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG-TEEEEEEECCC
T ss_pred             cCCCEEEEEEecccCCcchhhhHHHHHhhhhhccc-ceeEEEeeccc
Confidence            46899999999999999999999999999999754 58888887763

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.33  E-value=1.6e-06  Score=67.17  Aligned_cols=91  Identities=12%  Similarity=0.122  Sum_probs=70.0

Q ss_pred             cCCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc---------------------------chhHH
Q 026412           38 GQDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK---------------------------YKDLA   89 (239)
Q Consensus        38 ~~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~---------------------------~~~l~   89 (239)
                      .+++.+++.|| +.||+.|....+.+.+..+++... ++.++.|.+|.                           +..++
T Consensus        27 ~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~-g~~vigiS~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~~va  105 (237)
T d2zcta1          27 SQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRL-GVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVA  105 (237)
T ss_dssp             TTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHHHHHHHHCCCCCSCEEECGGGHHH
T ss_pred             cCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccC-CcceeeccCCcHHHHHHHhhhhhhhcccccccccccCcchHHH
Confidence            46788999998 999999999999999999888744 57777776552                           34788


Q ss_pred             HHcCC-------CCCCeEEEEeCCCcCcccc----CCCCCHHHHHHHHHHh
Q 026412           90 EKYGV-------SGFPTLKFFPKGNKDGEEY----GGGRDLEDFVSFINEK  129 (239)
Q Consensus        90 ~~~~i-------~~~Pt~~~~~~g~~~~~~~----~g~~~~~~l~~~l~~~  129 (239)
                      +.||+       ...|+++++++.|.....+    .-.|+.+++++.|+..
T Consensus       106 k~yGv~~~~~~~~~~RatFIIDpdG~Ir~~~~~~~~~gR~~dEiLr~l~aL  156 (237)
T d2zcta1         106 RRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKAL  156 (237)
T ss_dssp             HHTTCC----CCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred             HHcCCccccccccceeeeEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHH
Confidence            99998       3579999998776643322    2247999999998653

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.25  E-value=7.6e-06  Score=56.92  Aligned_cols=102  Identities=13%  Similarity=0.081  Sum_probs=81.7

Q ss_pred             EcChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCC-CCeEEEEeC
Q 026412           27 VLTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSG-FPTLKFFPK  105 (239)
Q Consensus        27 ~l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~-~Pt~~~~~~  105 (239)
                      +++.+|+......+.|+++.|+.+.-. -..+.+.+.++|+.++  +++.|+.+|.+++...++.||+.. .|.+.+...
T Consensus         4 ei~~~~~~~y~~~~~Pl~~~f~~~~~~-~~~~~~~~~~vAk~fk--gki~Fv~~D~~~~~~~l~~fgl~e~~P~~~i~~~   80 (125)
T d2b5ea3           4 EIDGSVFAQYVESGLPLGYLFYNDEEE-LEEYKPLFTELAKKNR--GLMNFVSIDARKFGRHAGNLNMKEQFPLFAIHDM   80 (125)
T ss_dssp             BCCHHHHHHHHHTTSCEEEEEESSHHH-HHHHHHHHHHHHHHTT--TTCEEEEEEHHHHTTHHHHTTCCSCSSEEEEEET
T ss_pred             ccCHHHHHHHHhcCCCEEEEEeCChHH-HHHHHHHHHHHHHHhc--CeeEEEEEchHHhHHHHHHcCCCccCCcEEEEec
Confidence            578999999998899999999987543 4578899999999996  569999999998888999999974 899988764


Q ss_pred             CCcCccc-------------cCCCCCHHHHHHHHHHhhC
Q 026412          106 GNKDGEE-------------YGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus       106 g~~~~~~-------------~~g~~~~~~l~~~l~~~~~  131 (239)
                      .+.....             ..+..+.+.+.+|+.+.+.
T Consensus        81 ~~~~ky~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~l~  119 (125)
T d2b5ea3          81 TEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLK  119 (125)
T ss_dssp             TTTEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHH
T ss_pred             ccCcccccchhhhhhcccccccccCCHHHHHHHHHHHHc
Confidence            4322121             1367899999999988753

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.25  E-value=1.6e-06  Score=65.17  Aligned_cols=90  Identities=16%  Similarity=0.210  Sum_probs=69.5

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----------------------------chhHH
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA   89 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (239)
                      .+|++++.|| +.||+.|....+.+.+..+.+... ++.++.|..|.                            ..+++
T Consensus        32 ~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~-g~~VlgIS~Ds~~s~~~~~~~~~~~~~~~~l~fpllsD~~~~v~  110 (194)
T d1uula_          32 KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDI-GCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIM  110 (194)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHH
T ss_pred             CCCeEEEEEEeCCccccchhhhhHHHhhhhhhccC-ceEEEEEecCchhhhhhhhhhhhhhccccCCCcceeeCCcchHH
Confidence            4689999999 999999999999999999999744 67788777552                            24789


Q ss_pred             HHcCCC------CCCeEEEEeCCCcCcccc----CCCCCHHHHHHHHHHh
Q 026412           90 EKYGVS------GFPTLKFFPKGNKDGEEY----GGGRDLEDFVSFINEK  129 (239)
Q Consensus        90 ~~~~i~------~~Pt~~~~~~g~~~~~~~----~g~~~~~~l~~~l~~~  129 (239)
                      +.||+-      .+|+.+++++.|.....+    .-.++.+++.+.|+..
T Consensus       111 ~~ygv~~~~~~~~~R~tfvID~~G~I~~~~~~~~~~~r~~~E~Lr~l~al  160 (194)
T d1uula_         111 KSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAF  160 (194)
T ss_dssp             HHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHcCCeeccCCceEEEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHh
Confidence            999983      367788888776654333    2347899999888653

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.15  E-value=2.9e-06  Score=61.10  Aligned_cols=88  Identities=15%  Similarity=0.161  Sum_probs=57.3

Q ss_pred             CCcEEEE-EECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-----------------------chhHHHHcCCC
Q 026412           40 DRGALVE-FYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-----------------------YKDLAEKYGVS   95 (239)
Q Consensus        40 ~k~vlV~-F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-----------------------~~~l~~~~~i~   95 (239)
                      .+++++. |++.|||+|....+.+.+..+++.. .++.++.+..|.                       ...+++.|++.
T Consensus        29 ~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~-~~~~vi~vs~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ygv~  107 (153)
T d1xvwa1          29 AKNVLLVFFPLAFTGICQGELDQLRDHLPEFEN-DDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVF  107 (153)
T ss_dssp             TCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSS-SSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCE
T ss_pred             CCcEEEEecccccccchhhhhhhhhhhhhhhcc-cccccccccchhhhHHHHHhhhhccceeEEecccccchhHHHhhhh
Confidence            3455554 5589999999999999999888864 457777776553                       23577788764


Q ss_pred             ------CCCeEEEEeCCCcCccccC---C-CCCHHHHHHHHHH
Q 026412           96 ------GFPTLKFFPKGNKDGEEYG---G-GRDLEDFVSFINE  128 (239)
Q Consensus        96 ------~~Pt~~~~~~g~~~~~~~~---g-~~~~~~l~~~l~~  128 (239)
                            ..|+.+++++.|+....+.   | .++..++.+.|..
T Consensus       108 ~~~~g~~~r~tfvID~~G~I~~~~~~~~~~~~~~~~~~~~L~a  150 (153)
T d1xvwa1         108 NEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAA  150 (153)
T ss_dssp             ETTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             hhccCceeeeEEEECCCCEEEEEEEeCCCcccCHHHHHHHHHh
Confidence                  2456777766655433322   1 3456666666544

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.15  E-value=2.8e-06  Score=61.68  Aligned_cols=89  Identities=17%  Similarity=0.247  Sum_probs=63.8

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----------------------------chhHH
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA   89 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (239)
                      .+|++++.|| +.||+.|....+.+.+..+++... ++.+..|..|.                            ...++
T Consensus        25 ~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~-~~~vigIS~d~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~  103 (158)
T d1zyea1          25 KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDV-NCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQIS  103 (158)
T ss_dssp             TTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHH
T ss_pred             CCCeEEEEEeehhcCCccccchhhHHHhHHHhhcC-CceEEeccCcCHHHHHHHHhhhHhhccccccccccccccccHHH
Confidence            4689999999 999999999999999999888644 46666665442                            23677


Q ss_pred             HHcCCC------CCCeEEEEeCCCcCccccC----CCCCHHHHHHHHHH
Q 026412           90 EKYGVS------GFPTLKFFPKGNKDGEEYG----GGRDLEDFVSFINE  128 (239)
Q Consensus        90 ~~~~i~------~~Pt~~~~~~g~~~~~~~~----g~~~~~~l~~~l~~  128 (239)
                      +.||+.      +.|+.+++++.|.....+.    -.++.+++.+.|+.
T Consensus       104 ~~ygv~~~~~g~~~R~tfvID~~G~I~~~~i~~~~~~~~~~EiL~~lka  152 (158)
T d1zyea1         104 RDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKA  152 (158)
T ss_dssp             HHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             HHHHhccccCCccccEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence            888876      2556777776665433222    24678888888764

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=98.13  E-value=1.7e-06  Score=63.75  Aligned_cols=90  Identities=16%  Similarity=0.263  Sum_probs=64.3

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----------------------------chhHH
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA   89 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (239)
                      .++++++.|| +.|||.|....+.+.+....+... ++.++.|..+.                            ..+++
T Consensus        32 gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~-g~~Vvgis~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~  110 (170)
T d1zofa1          32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEK-GFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSIS  110 (170)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHH
T ss_pred             CCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccC-CeeEecccccchhhHHHHHhhhhhcccccCcccccccccccHHH
Confidence            3467999999 999999999999999998888643 57777776542                            23677


Q ss_pred             HHcCCC-----CCCeEEEEeCCCcCccccC----CCCCHHHHHHHHHHh
Q 026412           90 EKYGVS-----GFPTLKFFPKGNKDGEEYG----GGRDLEDFVSFINEK  129 (239)
Q Consensus        90 ~~~~i~-----~~Pt~~~~~~g~~~~~~~~----g~~~~~~l~~~l~~~  129 (239)
                      +.||+.     ..|+.++++++|.....+.    -.++.+++.+.|+..
T Consensus       111 ~~ygv~~~~~~~~r~tfvID~~G~I~~~~~~~~~~~~~~~eiL~~l~aL  159 (170)
T d1zofa1         111 RDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDAL  159 (170)
T ss_dssp             HHTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHH
T ss_pred             HHcCCCccccceeEEEEEEcCCCeEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            888884     4677888887766532221    235677777776543

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=4.1e-06  Score=60.24  Aligned_cols=93  Identities=13%  Similarity=0.109  Sum_probs=65.1

Q ss_pred             CCCcEEEEEECCCCh-HHhhHhHHHHHHHHHccCC---CCeEEEEEeCccc----------------------------h
Q 026412           39 QDRGALVEFYAPWCG-HCKNLAPTYEKVAAAFTLE---DDVVVANLDADKY----------------------------K   86 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~-~C~~~~~~~~~~a~~~~~~---~~v~~~~vd~~~~----------------------------~   86 (239)
                      .+|++||.||.+||+ .|....+.+.++.+.+...   ..+.+..+..+..                            .
T Consensus        19 ~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (160)
T d1wp0a1          19 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD   98 (160)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHHHTTCTTCEEEECCHHHHH
T ss_pred             CCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHHhhcCCCcccccCchHHhh
Confidence            589999999999996 7998888888887765432   2344444433210                            1


Q ss_pred             hHHHHcCCCC---------------CCeEEEEeCCCcCccccCCCCCHHHHHHHHHHhhC
Q 026412           87 DLAEKYGVSG---------------FPTLKFFPKGNKDGEEYGGGRDLEDFVSFINEKCG  131 (239)
Q Consensus        87 ~l~~~~~i~~---------------~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~  131 (239)
                      .+...|++..               .|+++++++.|+....|.+..+++++.+-|.+.+.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~~~~~~~~i~~~I~~~lk  158 (160)
T d1wp0a1          99 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMR  158 (160)
T ss_dssp             HHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHT
T ss_pred             HHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence            3455666432               35778888877877778888899999998887764

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=98.06  E-value=1.3e-05  Score=50.30  Aligned_cols=72  Identities=17%  Similarity=0.217  Sum_probs=52.5

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHH
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFV  123 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~  123 (239)
                      +..|+.++|+.|......+.   +..    .+.+..+|+++++++..+|+.+ +|.+. . +|+.   ...-+.+.+++.
T Consensus         2 ltLyt~~~C~LCe~A~~~l~---~~~----~~~~~~vdI~~d~~l~~~y~~~-IPVl~-~-~~~~---~l~w~fd~~~l~   68 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEALA---QAR----AGAFFSVFIDDDAALESAYGLR-VPVLR-D-PMGR---ELDWPFDAPRLR   68 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHHH---HTT----CCCEEEEECTTCHHHHHHHTTT-CSEEE-C-TTCC---EEESCCCHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHH---hcc----CCcEEEEEccCCHHHHHHhCCe-eeEEE-E-CCee---EEcCccCHHHHH
Confidence            67889999999988765443   222    4678899999999999999986 89764 2 3322   122346999999


Q ss_pred             HHHHH
Q 026412          124 SFINE  128 (239)
Q Consensus       124 ~~l~~  128 (239)
                      +||..
T Consensus        69 ~~L~~   73 (75)
T d1ttza_          69 AWLDA   73 (75)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            99864

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=98.06  E-value=1e-05  Score=59.96  Aligned_cols=43  Identities=14%  Similarity=0.343  Sum_probs=29.1

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHHHHHHHccC-CCCeEEEEEe
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTL-EDDVVVANLD   81 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~-~~~v~~~~vd   81 (239)
                      .+++.+|.|+...||||++++|.+..+.+.... ...+.+....
T Consensus        17 ~~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~   60 (188)
T d1fvka_          17 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYH   60 (188)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEE
T ss_pred             CCCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEe
Confidence            356789999999999999999987555443221 2335555443

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=98.04  E-value=9.5e-06  Score=50.87  Aligned_cols=67  Identities=15%  Similarity=0.283  Sum_probs=45.6

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch---hHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHH
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK---DLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLE  120 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~---~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~  120 (239)
                      ++.|+.+||++|.+....+.+.        ++.+..+|+++++   +..+.+|.+++|++++  +| +    +.|+.+++
T Consensus         3 v~iYt~~~C~~C~~ak~~L~~~--------~i~~~~~~i~~~~~~~~~~~~~g~~tvP~i~i--~g-~----~igGf~~d   67 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALDRA--------GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DG-E----HWSGFRPE   67 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TT-E----EEESCCHH
T ss_pred             EEEEeCCCChhHHHHHHHHHHc--------CCceEEEEccCCHHHHHHHHHhCCCCcCEEEE--CC-E----EEeCCCHh
Confidence            5789999999999998776542        4566677777554   4446778999998743  44 2    34455666


Q ss_pred             HHHHH
Q 026412          121 DFVSF  125 (239)
Q Consensus       121 ~l~~~  125 (239)
                      .+.+.
T Consensus        68 ~l~~L   72 (74)
T d1r7ha_          68 RIKQL   72 (74)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            66553

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=6.1e-05  Score=50.89  Aligned_cols=101  Identities=17%  Similarity=0.183  Sum_probs=77.5

Q ss_pred             cChhhHHHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCC
Q 026412           28 LTEDNFEKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN  107 (239)
Q Consensus        28 l~~~~f~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~  107 (239)
                      -+....+..+..+..++|-|+..--+   .....|.++|+.+.   ++.++.+.   +.++++.+++.. |++++|++..
T Consensus         6 ~~~~~~e~f~~~~~v~VVGfF~~~~~---~~~~~F~~~A~~~~---d~~F~~t~---~~~v~~~~~v~~-~~Ivl~k~~d   75 (110)
T d1bjxa_           6 PDGAAAESLVESSEVAVIGFFKDVES---DSAKQFLQAAEAID---DIPFGITS---NSDVFSKYQLDK-DGVVLFKKFD   75 (110)
T ss_dssp             CSHHHHHHHHHHSSEEEEEECTTTTS---HHHHHHHHHHHHCS---SSCEEEEC---CSHHHHHTTCSS-CEEEEEESSS
T ss_pred             CCHHHHHHHhccCCeEEEEEEcCCCc---hHHHHHHHHHHhCc---CceEEEEC---CHHHHHHcCCCC-CeEEEeccCC
Confidence            34567888887888888888875433   34567889999874   46676643   457889999975 9999999876


Q ss_pred             cCccccCCCCCHHHHHHHHHHhhCCCCCCCC
Q 026412          108 KDGEEYGGGRDLEDFVSFINEKCGTSRDGKG  138 (239)
Q Consensus       108 ~~~~~~~g~~~~~~l~~~l~~~~~~~~~~~~  138 (239)
                      .....|.|..+.++|.+||...+-|-..+.+
T Consensus        76 e~~~~~~~~~~~~~l~~fi~~~~~PlV~e~~  106 (110)
T d1bjxa_          76 EGRNNFEGEVTKENLLDFIKHNQLPLVIEFT  106 (110)
T ss_dssp             SSBCCCCSCCCHHHHHHHHHHHSSCCCSSCC
T ss_pred             ccccccCCCCCHHHHHHHHHHcCcCcEEecC
Confidence            6667788899999999999998876665543

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=1.1e-05  Score=58.77  Aligned_cols=68  Identities=15%  Similarity=0.329  Sum_probs=47.8

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-----------------------chhHHHHcCC
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-----------------------YKDLAEKYGV   94 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-----------------------~~~l~~~~~i   94 (239)
                      .+|++++.|| +.||++|....|.+.+.+.++.   ++.++.|..+.                       +.++++.||+
T Consensus        43 ~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~---~~~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ygv  119 (164)
T d1qxha_          43 AGKRKVLNIFPSIDTGVCAASVRKFNQLATEID---NTVVLCISADLPFAQSRFCGAEGLNNVITLSTFRNAEFLQAYGV  119 (164)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHTST---TEEEEEEESSCHHHHTTCCSSTTCTTEEEEECTTCHHHHHHTTC
T ss_pred             CCCeEEEEEecchhcccchHHHHHHHHHHHhhc---cceeeeEEcCCHHHHHHHHHHhCCCcceeeccccchhhHHhcCe
Confidence            5678888887 7799999999999999887764   56666665442                       2356777776


Q ss_pred             C---------CCCeEEEEeCCCcC
Q 026412           95 S---------GFPTLKFFPKGNKD  109 (239)
Q Consensus        95 ~---------~~Pt~~~~~~g~~~  109 (239)
                      .         ..|+++++++.|+.
T Consensus       120 ~~~~~~~~g~~~ra~fvID~~G~I  143 (164)
T d1qxha_         120 AIADGPLKGLAARAVVVIDENDNV  143 (164)
T ss_dssp             BBCSSTTTTSBCCEEEEECTTSBE
T ss_pred             EeecCcccCcccCEEEEEcCCCEE
Confidence            3         13566777665554

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.91  E-value=2.9e-05  Score=56.35  Aligned_cols=87  Identities=10%  Similarity=0.156  Sum_probs=55.7

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-----------------------chhHHHHcCC
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-----------------------YKDLAEKYGV   94 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-----------------------~~~l~~~~~i   94 (239)
                      .++++++.|| +.|||.|....+.+.+...++.   ++.++.|..+.                       ...+.+.||+
T Consensus        41 ~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~---~~~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ygv  117 (163)
T d1psqa_          41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD---NTVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYAL  117 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCT---TEEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHHHHHTC
T ss_pred             CCcEEEEEeccccccccchhhHHHHHHHHHhhc---ccceEEEEeccHHHHHHHHHHcCCcceeeeccccchhHHHhhee
Confidence            5678888888 7899999999998887766664   56666665442                       1256777876


Q ss_pred             CC--C----CeEEEEeCCCcCcccc-----CCCCCHHHHHHHHHH
Q 026412           95 SG--F----PTLKFFPKGNKDGEEY-----GGGRDLEDFVSFINE  128 (239)
Q Consensus        95 ~~--~----Pt~~~~~~g~~~~~~~-----~g~~~~~~l~~~l~~  128 (239)
                      ..  +    |+.+++++.|......     ...++.+++.+++++
T Consensus       118 ~~~~~~~~~Ra~fvID~~G~I~y~~~~~~~~~~~~~~~il~alk~  162 (163)
T d1psqa_         118 LINEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA  162 (163)
T ss_dssp             BCTTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred             ecccccceeEEEEEECCCCEEEEEEEcCCCCCCCCHHHHHHHHhc
Confidence            42  2    2456666555543221     223456777766653

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.91  E-value=1.9e-05  Score=58.66  Aligned_cols=90  Identities=16%  Similarity=0.072  Sum_probs=66.6

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-------------------------chhHHHHc
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------------------------YKDLAEKY   92 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~~   92 (239)
                      .+++++++|| +.||+.|....+.+.+..+++... ++.+..|.+|.                         +..+++.|
T Consensus        29 kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~-~~~v~gIS~Ds~~sh~~f~~~~~~~~~~~fpllsD~~~~v~~~y  107 (186)
T d1n8ja_          29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKL-GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNF  107 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHT-TEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHT
T ss_pred             CCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccc-cEEEEeccccCHHHHHHHhccccccccccccccccHHHHHHHHh
Confidence            4688999999 899999999999999999998643 56777776552                         23678888


Q ss_pred             CCC------CCCeEEEEeCCCcCcccc----CCCCCHHHHHHHHHHh
Q 026412           93 GVS------GFPTLKFFPKGNKDGEEY----GGGRDLEDFVSFINEK  129 (239)
Q Consensus        93 ~i~------~~Pt~~~~~~g~~~~~~~----~g~~~~~~l~~~l~~~  129 (239)
                      |+.      ..|+.++.++.|.....+    .-.++.+++.+.|+..
T Consensus       108 Gv~~~~~g~~~r~tfiID~~G~Ir~~~v~~~~~~r~~~eiL~~lkaL  154 (186)
T d1n8ja_         108 DNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA  154 (186)
T ss_dssp             TCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             CCCcccCCcceeeEEEECchheEEEEeecCCCcccCHHHHHHHHHHH
Confidence            884      357788887766543222    2347899988888754

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=97.90  E-value=1.4e-05  Score=50.41  Aligned_cols=51  Identities=12%  Similarity=0.231  Sum_probs=38.2

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhH---HHHcCCCCCCeEEE
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDL---AEKYGVSGFPTLKF  102 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l---~~~~~i~~~Pt~~~  102 (239)
                      ++.|+.+||++|.+....+.+.        ++.+..+|++.+++.   .+..|.+++|++++
T Consensus         3 i~iYs~~~C~~C~~ak~~L~~~--------~i~y~~~~i~~~~~~~~~~~~~g~~tvP~i~i   56 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAMENR--------GFDFEMINVDRVPEAAEALRAQGFRQLPVVIA   56 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--------TCCCEEEETTTCHHHHHHHHHTTCCSSCEEEE
T ss_pred             EEEEeCCCCccHHHHHHHHHhc--------CceeEEEeecCCHHHHHHHHhcCCCCCCEEEE
Confidence            5778999999999998776542        466777888766543   34568899999765

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.84  E-value=2.9e-05  Score=56.82  Aligned_cols=46  Identities=15%  Similarity=0.259  Sum_probs=36.9

Q ss_pred             cCCCcEEEEEECCCCh-HHhhHhHHHHHHHHHccC-CCCeEEEEEeCc
Q 026412           38 GQDRGALVEFYAPWCG-HCKNLAPTYEKVAAAFTL-EDDVVVANLDAD   83 (239)
Q Consensus        38 ~~~k~vlV~F~a~wC~-~C~~~~~~~~~~a~~~~~-~~~v~~~~vd~~   83 (239)
                      -.+|+++|.||.+||+ .|....+.+.++.+.+.. ..++.++.|.+|
T Consensus        29 ~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiD   76 (172)
T d1xzoa1          29 LKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVD   76 (172)
T ss_dssp             GTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             hCCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccc
Confidence            3578999999999997 799999999998887743 236777777654

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=97.80  E-value=1.6e-05  Score=58.23  Aligned_cols=89  Identities=18%  Similarity=0.277  Sum_probs=64.3

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----------------------------chhHH
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA   89 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (239)
                      ..+++|+.|| +.||+.|....+.+.+..+.+... ++.++.|.+|.                            ...++
T Consensus        26 g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~-g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~  104 (170)
T d2h01a1          26 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKER-NVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIA  104 (170)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHH
T ss_pred             CCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcC-CeeEecccCCcHHHHHhHhhhhhhhccccccCCceeEcCccHHH
Confidence            3578999999 899999999999999999888643 57788887662                            23677


Q ss_pred             HHcCCC-----CCCeEEEEeCCCcCccccC----CCCCHHHHHHHHHH
Q 026412           90 EKYGVS-----GFPTLKFFPKGNKDGEEYG----GGRDLEDFVSFINE  128 (239)
Q Consensus        90 ~~~~i~-----~~Pt~~~~~~g~~~~~~~~----g~~~~~~l~~~l~~  128 (239)
                      +.||+.     ..++.+++.++|.....+.    -.++.+++.+.|+.
T Consensus       105 ~~ygv~~~~~~~~R~tfiId~~G~I~~~~~~~~~~~~~~~eil~~l~~  152 (170)
T d2h01a1         105 RSYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDA  152 (170)
T ss_dssp             HHTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHH
T ss_pred             HHhCCccccccceeeeEEEcCCCeEEEEEEecCCCCCCHHHHHHHHHH
Confidence            888873     2467777776665443332    23567777777765

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.80  E-value=1.7e-05  Score=53.27  Aligned_cols=64  Identities=14%  Similarity=0.267  Sum_probs=42.9

Q ss_pred             HHHhcCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch-----hHHHHcCCCCCCeEEE
Q 026412           34 EKEVGQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK-----DLAEKYGVSGFPTLKF  102 (239)
Q Consensus        34 ~~~~~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~-----~l~~~~~i~~~Pt~~~  102 (239)
                      ++.+.+++  +|.|+.+|||+|.+....+.+..-.+   ..+.+..+|.+.+.     .+.+..+.+.+|.+++
T Consensus         6 ~~~i~~~~--Vviysk~~Cp~C~~ak~ll~~~~~~~---~~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqIfi   74 (105)
T d1ktea_           6 NSKIQPGK--VVVFIKPTCPFCRKTQELLSQLPFKE---GLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFI   74 (105)
T ss_dssp             HHHCCTTC--EEEEECSSCHHHHHHHHHHHHSCBCT---TSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEE
T ss_pred             HHHhccCC--EEEEECCCCchHHHHHHHHHHhCCcc---ceeeeeecccccccHHHHHHHhhccCCCcCcEEEE
Confidence            34445554  77899999999999988777653332   35677788776443     2333457788998743

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=1.3e-05  Score=51.68  Aligned_cols=75  Identities=24%  Similarity=0.297  Sum_probs=52.1

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch----hHHHHc--CCCCCCeEEEEeCCCcCccccCCCC
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKY--GVSGFPTLKFFPKGNKDGEEYGGGR  117 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~----~l~~~~--~i~~~Pt~~~~~~g~~~~~~~~g~~  117 (239)
                      +|.|..+|||+|.+....+.+....+.   ++.+..+|++.++    .+.+..  +++.+|.+++  +| +    +.|+.
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqIfi--~g-~----~IGG~   72 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNERD---DFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFV--DQ-Q----HIGGY   72 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHS---SCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEE--TT-E----EEESS
T ss_pred             EEEEeCCCCHhHHHHHHHHHHcCCCCC---CceEEEEecCCCHHHHHHHHHHhcCCCCCCCEEEE--CC-E----EEECH
Confidence            578999999999999999999988875   5778888876443    333333  3467999643  44 2    33443


Q ss_pred             CHHHHHHHHHHhh
Q 026412          118 DLEDFVSFINEKC  130 (239)
Q Consensus       118 ~~~~l~~~l~~~~  130 (239)
                        +++.+++++..
T Consensus        73 --~el~~~~~~~~   83 (85)
T d1egoa_          73 --TDFAAWVKENL   83 (85)
T ss_dssp             --HHHHHHHHHHH
T ss_pred             --HHHHHHHHhcC
Confidence              56777776643

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=7.2e-05  Score=55.98  Aligned_cols=90  Identities=17%  Similarity=0.255  Sum_probs=67.2

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----------------------------chhHH
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA   89 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (239)
                      .++++++.|| +.||+.|......+.+..+.+... ++.++.|.+|.                            ..+++
T Consensus        33 ~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~-g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~va  111 (197)
T d1qmva_          33 KGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKL-GCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLS  111 (197)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCHHH
T ss_pred             CCCeEEEEEecccccccchhhhHHHHHHHHHhccC-CcEEEEEecCCHHHHHhhhcchhhhcCcCCCccceEeccchHHH
Confidence            4688999999 999999999999999999998744 57777776652                            23688


Q ss_pred             HHcCCC------CCCeEEEEeCCCcCccc--cC--CCCCHHHHHHHHHHh
Q 026412           90 EKYGVS------GFPTLKFFPKGNKDGEE--YG--GGRDLEDFVSFINEK  129 (239)
Q Consensus        90 ~~~~i~------~~Pt~~~~~~g~~~~~~--~~--g~~~~~~l~~~l~~~  129 (239)
                      +.||+-      .+|+.+++++.|.....  +.  -.++.+++...|+..
T Consensus       112 ~~ygv~~~~~g~~~R~tfiID~~g~Ir~~~~~~~~~~r~~~E~lr~l~al  161 (197)
T d1qmva_         112 EDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAF  161 (197)
T ss_dssp             HHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHhCCCcccCCeeeEEEEEECCCCcEEEEEecCCCcccCHHHHHHHHHhh
Confidence            888884      36778888776654332  22  247899998887654

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=97.67  E-value=5.4e-05  Score=48.27  Aligned_cols=50  Identities=14%  Similarity=0.259  Sum_probs=36.3

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccch----hHHHHcCCCCCCeEE
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYK----DLAEKYGVSGFPTLK  101 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~----~l~~~~~i~~~Pt~~  101 (239)
                      +..|..+|||+|.+....+++.        ++.+..+|+++++    .+.+..|.+.+|.++
T Consensus         3 I~iys~~~Cp~C~~ak~~L~~~--------~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i~   56 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALLSSK--------GVSFQELPIDGNAAKREEMIKRSGRTTVPQIF   56 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH--------TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEE
T ss_pred             EEEEeCCCCHhHHHHHHHHHHc--------CCCeEEEeccchHHHHHHHHHHhCCCCCCeEE
Confidence            5678899999999988766543        3556677776543    445566888999874

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.66  E-value=0.00012  Score=53.05  Aligned_cols=86  Identities=15%  Similarity=0.203  Sum_probs=53.6

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----------------------chhHHHHcCCC
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------YKDLAEKYGVS   95 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----------------------~~~l~~~~~i~   95 (239)
                      .++++++.|| +.|||.|....+.+.+.....    ++.++.|..+.                      +..+.+.|++.
T Consensus        42 ~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~~----g~~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  117 (166)
T d1xvqa_          42 RGKSVLLNIFPSVDTPVCATSVRTFDERAAAS----GATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVT  117 (166)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHHT----TCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCB
T ss_pred             CCcEEEEEeeecccccccHHHHHHHhhhcccc----cccccccccchHHHHHHHHHHhCCcccccccchhHHHHHHhCee
Confidence            6788999999 568888999988887776654    35556555442                      22455666653


Q ss_pred             ---------CCCeEEEEeCCCcCcccc-----CCCCCHHHHHHHHHH
Q 026412           96 ---------GFPTLKFFPKGNKDGEEY-----GGGRDLEDFVSFINE  128 (239)
Q Consensus        96 ---------~~Pt~~~~~~g~~~~~~~-----~g~~~~~~l~~~l~~  128 (239)
                               ..|+++++++.|+.....     ....+.+++.+.|..
T Consensus       118 ~~~~~~~g~~~ra~fvID~~G~I~y~~~~~~~~~~~~~d~il~aL~a  164 (166)
T d1xvqa_         118 IADGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALGA  164 (166)
T ss_dssp             BCSSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHHHH
T ss_pred             eccCcccCceeeEEEEEeCCCEEEEEEEcCCCCCCCCHHHHHHHHHh
Confidence                     135677776665543211     223466666666643

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=0.00028  Score=53.58  Aligned_cols=90  Identities=18%  Similarity=0.220  Sum_probs=66.0

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc-------------------------------ch
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK-------------------------------YK   86 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~-------------------------------~~   86 (239)
                      .++++++.|| +.||+.|......+.+..+.+... ++.+..|.+|.                               +.
T Consensus        26 g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~-g~~v~giS~Ds~~sh~~~~~~~~~~~~~~~~~~l~fpllsD~~~  104 (220)
T d1prxa_          26 GDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKR-NVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNR  104 (220)
T ss_dssp             TTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTT-TEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTC
T ss_pred             CCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcc-cceeeccccccccchhhhhhhhhhccccccccCcccccccCccc
Confidence            4678888888 789999999999999999998754 46666665542                               34


Q ss_pred             hHHHHcCCC------------CCCeEEEEeCCCcCccc--cC--CCCCHHHHHHHHHHh
Q 026412           87 DLAEKYGVS------------GFPTLKFFPKGNKDGEE--YG--GGRDLEDFVSFINEK  129 (239)
Q Consensus        87 ~l~~~~~i~------------~~Pt~~~~~~g~~~~~~--~~--g~~~~~~l~~~l~~~  129 (239)
                      ++++.||+-            ..++++++++.+.....  |.  -+|+.+++..-|+..
T Consensus       105 ~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~~~~~~~gR~~dEiLr~l~al  163 (220)
T d1prxa_         105 ELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISL  163 (220)
T ss_dssp             HHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred             HHHHHhCCccccccccccceeeeEEEEEEcCccceeEEEEecCCcccchHHHHHHHHHH
Confidence            788899874            24677888777654322  22  247999999887654

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.60  E-value=0.00054  Score=45.33  Aligned_cols=92  Identities=13%  Similarity=0.194  Sum_probs=70.1

Q ss_pred             ChhhHHHHhc-CCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCC
Q 026412           29 TEDNFEKEVG-QDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGN  107 (239)
Q Consensus        29 ~~~~f~~~~~-~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~  107 (239)
                      +.+..+..++ ++..++|=|+..--+   .....|.++|+.+.  +++.|+..   .+.++++++|+. .|++++|++-.
T Consensus         6 ~~~e~~~F~~~~d~v~VvGfF~~~~~---~~~~~F~~~A~~~r--d~~~F~~t---~d~~va~~~~v~-~~~vvlfr~fd   76 (102)
T d1a8ya2           6 GERELQAFENIEDEIKLIGYFKNKDS---EHYKAFKEAAEEFH--PYIPFFAT---FDSKVAKKLTLK-LNEIDFYEAFM   76 (102)
T ss_dssp             SHHHHHHHTTCCSSCEEEEECSSTTC---HHHHHHHHHHHHHT--TTSCEEEE---CCHHHHHHHCCC-TTCEEEECTTC
T ss_pred             CHHHHHHHhccCCCEEEEEEECCCCc---HHHHHHHHHHHHcC--CCceEEEE---CCHHHHHHcCCC-CCCEEEeeecC
Confidence            3456777775 566778877764333   34567888888875  46777764   467899999995 89999998876


Q ss_pred             cCccccCCC-CCHHHHHHHHHHh
Q 026412          108 KDGEEYGGG-RDLEDFVSFINEK  129 (239)
Q Consensus       108 ~~~~~~~g~-~~~~~l~~~l~~~  129 (239)
                      +....|.|. .+.++|.+||.++
T Consensus        77 e~~~~~~~~~~t~~~i~~Fi~~n   99 (102)
T d1a8ya2          77 EEPVTIPDKPNSEEEIVNFVEEH   99 (102)
T ss_dssp             SSEEECSSSSCCHHHHHHHHHHT
T ss_pred             CCceecCCCCCCHHHHHHHHHHh
Confidence            667888885 8999999999875

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=97.49  E-value=0.00016  Score=44.98  Aligned_cols=51  Identities=12%  Similarity=0.207  Sum_probs=35.6

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc---hhHHHHcCCCCCCeEEE
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY---KDLAEKYGVSGFPTLKF  102 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~---~~l~~~~~i~~~Pt~~~  102 (239)
                      ++.|+.+|||+|++....+.+.        ++.+..+|++.+   ..+.+..+...+|.+++
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~~--------~i~~~~~~v~~~~~~~~~~~~~~~~tvP~i~i   60 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHDK--------GLSFEEIILGHDATIVSVRAVSGRTTVPQVFI   60 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH--------TCCCEEEETTTTCCHHHHHHHTCCSSSCEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHc--------CCCeEEEEccCcHHHHHHHHHhCCccCCEEEE
Confidence            6789999999999998777654        244555555532   34445667889998643

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.46  E-value=0.00016  Score=45.19  Aligned_cols=72  Identities=15%  Similarity=0.374  Sum_probs=53.6

Q ss_pred             EEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCC-CCHHHHH
Q 026412           45 VEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGG-RDLEDFV  123 (239)
Q Consensus        45 V~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~-~~~~~l~  123 (239)
                      |....+.|+.|.++....++.+.++.  -+..+.+|  ++.+++. +|||-++|.+++  +|   -..+.|. .+.+++.
T Consensus         4 IkVlg~gC~~C~~~~~~v~~a~~e~g--i~a~v~kv--~d~~ei~-~ygVmstPalvI--dg---~vv~~G~vPs~~ei~   73 (77)
T d1iloa_           4 IQIYGTGCANCQMLEKNAREAVKELG--IDAEFEKI--KEMDQIL-EAGLTALPGLAV--DG---ELKIMGRVASKEEIK   73 (77)
T ss_dssp             EEEECSSSSTTHHHHHHHHHHHHHTT--CCEEEEEE--CSHHHHH-HHTCSSSSCEEE--TT---EEEECSSCCCHHHHH
T ss_pred             EEEeCCCCccHHHHHHHHHHHHHHcC--CceEEEEe--CCHHHHH-HcCCcCCCEEEE--CC---EEEEEecCCCHHHHH
Confidence            44558999999999999999888864  23444444  5666776 699999999754  33   2456674 6999999


Q ss_pred             HHH
Q 026412          124 SFI  126 (239)
Q Consensus       124 ~~l  126 (239)
                      +||
T Consensus        74 ~~L   76 (77)
T d1iloa_          74 KIL   76 (77)
T ss_dssp             HHC
T ss_pred             HHh
Confidence            986

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.22  E-value=0.00044  Score=49.16  Aligned_cols=105  Identities=10%  Similarity=0.066  Sum_probs=56.7

Q ss_pred             cEEcChhhHHHHhcCCCcEEEEEECCCCh-HHhhHhHHHHHHHHHccC--CCCeEEEEEeCccc---h------------
Q 026412           25 VVVLTEDNFEKEVGQDRGALVEFYAPWCG-HCKNLAPTYEKVAAAFTL--EDDVVVANLDADKY---K------------   86 (239)
Q Consensus        25 v~~l~~~~f~~~~~~~k~vlV~F~a~wC~-~C~~~~~~~~~~a~~~~~--~~~v~~~~vd~~~~---~------------   86 (239)
                      +.+.+++++.-.--.+|++||.||.+||+ .|......+..+...+..  ...+.+..+..+..   .            
T Consensus        11 l~d~~G~~vsl~~~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (169)
T d2b7ka1          11 LEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHP   90 (169)
T ss_dssp             EEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCT
T ss_pred             EEeCCCCEECHHHHCCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeeccccccCchhhhhhhhccccc
Confidence            34445555533334679999999999996 455554444444433221  12233333322210   0            


Q ss_pred             -------------hHH----------------HHcCCCCCCeEEEEeCCCcCccccCCCCCHHH----HHHHHHHh
Q 026412           87 -------------DLA----------------EKYGVSGFPTLKFFPKGNKDGEEYGGGRDLED----FVSFINEK  129 (239)
Q Consensus        87 -------------~l~----------------~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~----l~~~l~~~  129 (239)
                                   ...                ..+.+...|+++++++.|+....|.+..+++.    +.+-|++.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~~~~~~~~~~~~~~I~e~ik~l  166 (169)
T d2b7ka1          91 SILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSY  166 (169)
T ss_dssp             TCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHHHHC
T ss_pred             cccccccchhhhhhhhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence                         111                12345667999999888777777777666554    44444443

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=96.85  E-value=0.0011  Score=47.61  Aligned_cols=42  Identities=17%  Similarity=0.385  Sum_probs=34.3

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD   83 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~   83 (239)
                      .+|++++.|| +.||+.|....+.+.+...++.   ++.++.|.+|
T Consensus        41 ~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~---~~~vi~iS~d   83 (164)
T d1q98a_          41 ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS---NTIVLCISAD   83 (164)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST---TEEEEEEESS
T ss_pred             CCcEEEEEecCccccCcccHHHHHHHHHHHHhc---cceEEeecCC
Confidence            4678888888 5688889999999999888885   5777777665

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=96.74  E-value=0.0028  Score=47.77  Aligned_cols=90  Identities=16%  Similarity=0.238  Sum_probs=66.4

Q ss_pred             CCCcEEEEEE-CCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCcc----------------------------chhHH
Q 026412           39 QDRGALVEFY-APWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADK----------------------------YKDLA   89 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~----------------------------~~~l~   89 (239)
                      +++++++.|| +.||+.|......+.+...++... ++.+..|.+|.                            +.+++
T Consensus        29 ~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~-~~~vigiS~Ds~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~va  107 (219)
T d1xcca_          29 ENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKL-NCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELA  107 (219)
T ss_dssp             TTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTT-TEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHH
T ss_pred             CCCeEEEEEEcCCCCcccchhHHHHHHhhhhhccc-ceEEEeecCccHhHHhHHhhhhHhhcccCCCCcccccccccHHH
Confidence            5789999999 999999999999999999998754 57777777652                            23688


Q ss_pred             HHcCCC--------C----CCeEEEEeCCCcCcc--cc--CCCCCHHHHHHHHHHh
Q 026412           90 EKYGVS--------G----FPTLKFFPKGNKDGE--EY--GGGRDLEDFVSFINEK  129 (239)
Q Consensus        90 ~~~~i~--------~----~Pt~~~~~~g~~~~~--~~--~g~~~~~~l~~~l~~~  129 (239)
                      +.||+-        +    ..+++++++.+....  .|  .-.++.+++...|+..
T Consensus       108 ~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EiLr~l~aL  163 (219)
T d1xcca_         108 NKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSL  163 (219)
T ss_dssp             HHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHhCCcccccccCcccceeeeeeEEEcCcceEEEEEEeCCCcccCHHHHHHHHHHH
Confidence            889873        1    236667777665432  22  2358999999988654

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=96.27  E-value=0.00082  Score=49.92  Aligned_cols=43  Identities=14%  Similarity=0.370  Sum_probs=30.9

Q ss_pred             CCCcEEEEEECCCChHHhhHhHHHH---HHHHHccCCCCeEEEEEe
Q 026412           39 QDRGALVEFYAPWCGHCKNLAPTYE---KVAAAFTLEDDVVVANLD   81 (239)
Q Consensus        39 ~~k~vlV~F~a~wC~~C~~~~~~~~---~~a~~~~~~~~v~~~~vd   81 (239)
                      .+++.++.|+..+||||.++.|.+.   ++.+.++.+..+....+.
T Consensus       112 ~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~~v~~~~~~~~  157 (195)
T d1un2a_         112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN  157 (195)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECS
T ss_pred             CCCceEEEEEecCCccccccchhhhHHHHHHhhcCCCcEEEEEecC
Confidence            4678899999999999999999875   455555543344444444

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.96  E-value=0.0071  Score=40.19  Aligned_cols=60  Identities=15%  Similarity=0.267  Sum_probs=37.8

Q ss_pred             hHHHHhcCCCcEEEEEEC-----CCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchh----HHHHcCCCCCCeEE
Q 026412           32 NFEKEVGQDRGALVEFYA-----PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD----LAEKYGVSGFPTLK  101 (239)
Q Consensus        32 ~f~~~~~~~k~vlV~F~a-----~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~~  101 (239)
                      ..+.+++++ +|+| |..     |.||+|++....+.+.        ++.+..+|++++++    +.+..+.+.+|.++
T Consensus         7 ~i~~~i~~~-~Vvv-F~Kgt~~~p~Cp~c~~ak~lL~~~--------~i~~~~~~v~~~~~~~~~l~~~t~~~TvPqIF   75 (109)
T d1wika_           7 GLKVLTNKA-SVML-FMKGNKQEAKCGFSKQILEILNST--------GVEYETFDILEDEEVRQGLKTFSNWPTYPQLY   75 (109)
T ss_dssp             CHHHHHTTS-SEEE-EESSTTTCCCSSTHHHHHHHHHHT--------CSCEEEEESSSCHHHHHHHHHHHSCCSSCEEE
T ss_pred             HHHHHHhcC-CEEE-EeCCCCCCCCChHHHHHHHHHHhc--------CCCceEEEecccHHHHHHHHHhcCCCCCCeEE
Confidence            345555443 3433 643     8899999998776532        35566777776543    34455777899864

>d1hyua3 c.47.1.2 (A:1-102) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.52  E-value=0.036  Score=36.11  Aligned_cols=78  Identities=12%  Similarity=0.107  Sum_probs=58.5

Q ss_pred             CCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCH
Q 026412           40 DRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDL  119 (239)
Q Consensus        40 ~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~  119 (239)
                      .++|.+..+...|+.|.++...+++++..-   +.+.+..-+.          +....|++.+..+|.....+|.|-+.-
T Consensus        18 ~~~V~l~~~~~~~~~s~el~~~l~eva~lS---dkI~~~~~~~----------~~~r~Ps~~i~~~g~~~gI~F~GiP~G   84 (102)
T d1hyua3          18 TKPVELIATLDDSAKSAEIKELLAEIAELS---DKVTFKEDNT----------LPVRKPSFLITNPGSQQGPRFAGSPLG   84 (102)
T ss_dssp             CSCEEEEEECCSSHHHHHHHHHHHHHHTTC---TTEEEEECTT----------SSSCSSEEEEECTTCCCSCEEESCCCG
T ss_pred             CCCEEEEEEeCCChhHHHHHHHHHHHHhhC---CCeEEEEcCC----------CCCCCCeEEEecCCCEeeeEEecCCCc
Confidence            567888888889999999999999988864   3565543221          123479998887775567899999888


Q ss_pred             HHHHHHHHHhh
Q 026412          120 EDFVSFINEKC  130 (239)
Q Consensus       120 ~~l~~~l~~~~  130 (239)
                      .+|..||...+
T Consensus        85 hEF~Slilail   95 (102)
T d1hyua3          85 HEFTSLVLALL   95 (102)
T ss_dssp             GGHHHHHHHHH
T ss_pred             ccHHHHHHHHH
Confidence            88888887654

>d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Atu2684-like
domain: Hypothetical protein Atu2684
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.42  E-value=0.32  Score=36.11  Aligned_cols=82  Identities=18%  Similarity=0.246  Sum_probs=52.7

Q ss_pred             CcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCc--c---------c-------hhHHHHcCCCCCCeEEE
Q 026412           41 RGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDAD--K---------Y-------KDLAEKYGVSGFPTLKF  102 (239)
Q Consensus        41 k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~--~---------~-------~~l~~~~~i~~~Pt~~~  102 (239)
                      +.|+=.|++.||+.|-.....+.++++.    ++|.....-+|  +         .       ...+..++.+++||=-+
T Consensus         6 ~aVVElFTSqgCssCPpAd~~L~~L~~~----~~Vi~La~HVdYWd~lGw~D~fa~~~~t~RQ~~Y~~~~g~~~vyTPq~   81 (225)
T d2axoa1           6 KGVVELFTSQGCASCPPADEALRKMIQK----GDVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTPQA   81 (225)
T ss_dssp             CCEEEEEECTTCTTCHHHHHHHHHHHHH----TSSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSSEE
T ss_pred             CcEEEEeeCCCCCCCHHHHHHHHHhhCC----CCEEEEEeccccccccCCCCCCCCchhhHHHHHHHHhcCCCCCCceeE
Confidence            4455569999999999999999999875    35666555443  1         1       23455668887665444


Q ss_pred             EeCCCcCccccCCCCCHHHHHHHHHHhh
Q 026412          103 FPKGNKDGEEYGGGRDLEDFVSFINEKC  130 (239)
Q Consensus       103 ~~~g~~~~~~~~g~~~~~~l~~~l~~~~  130 (239)
                      +.+|..    .....+...+...|....
T Consensus        82 vvnG~~----~~~gs~~~~~~~~i~~~~  105 (225)
T d2axoa1          82 ILNGRD----HVKGADVRGIYDRLDAFK  105 (225)
T ss_dssp             EETTTE----EEETTCHHHHHHHHHHHH
T ss_pred             EEeCcc----cccccCHHHHHHHHHHHh
Confidence            456621    223346777777776654

>d1g7oa2 c.47.1.5 (A:1-75) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Glutaredoxin 2
species: Escherichia coli [TaxId: 562]

Probab=92.18  E-value=0.15  Score=30.87  Aligned_cols=72  Identities=15%  Similarity=0.186  Sum_probs=46.6

Q ss_pred             EEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHHHH
Q 026412           46 EFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFVSF  125 (239)
Q Consensus        46 ~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~  125 (239)
                      .|+.++||+|++..-.+....-      ++.+..++.+....+.+..+...+|++.. .+| ..      -.....+.+|
T Consensus         3 LY~~~~cP~~~rvr~~l~~kgi------~~e~~~~~~~~~~~~~~~~p~~~VP~L~~-~dg-~~------i~eS~~I~~y   68 (75)
T d1g7oa2           3 LYIYDHCPYCLKARMIFGLKNI------PVELHVLLNDDAETPTRMVGQKQVPILQK-DDS-RY------MPESMDIVHY   68 (75)
T ss_dssp             EEECTTCHHHHHHHHHHHHHTC------CCEEEECCTTTTHHHHHHHSSSCCCEEEE-TTT-EE------EECHHHHHHH
T ss_pred             EEccCCCCchHHHHHHHHHhCC------CcccccccccchHHHHHhCCCCceEEEEE-cCC-CE------EecHHHHHHH
Confidence            4778899999998765554322      24444555555566667777778998642 222 21      1357889999


Q ss_pred             HHHhhC
Q 026412          126 INEKCG  131 (239)
Q Consensus       126 l~~~~~  131 (239)
                      |++..|
T Consensus        69 Ld~~~G   74 (75)
T d1g7oa2          69 VDKLDG   74 (75)
T ss_dssp             HHHHTT
T ss_pred             HHHhhC
Confidence            988755

>d1t4za_ c.47.1.15 (A:) Adaptive-response sensory-kinase SasA, N-terminal domain {Synechococcus elongatus [TaxId: 32046]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: KaiB-like
domain: Adaptive-response sensory-kinase SasA, N-terminal domain
species: Synechococcus elongatus [TaxId: 32046]

Probab=90.76  E-value=1.3  Score=28.43  Aligned_cols=87  Identities=11%  Similarity=0.146  Sum_probs=59.7

Q ss_pred             CcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHH
Q 026412           41 RGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLE  120 (239)
Q Consensus        41 k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~  120 (239)
                      ++..+..|...-+...+....+..+.+.+.....+.+--||+.+++++++.++|-.+||++=..+.  ...++.|.--..
T Consensus        11 ~~l~L~LfV~g~p~S~~ai~~l~~~le~~~~g~~y~LeVIDv~~qPelaE~~~IvATPtLIK~~P~--P~q~l~Gs~i~~   88 (105)
T d1t4za_          11 QPLLLQLFVDTRPLSQHIVQRVKNILAAVEATVPISLQVINVADQPQLVEYYRLVVTPALVKIGPG--SRQVLSGIDLTD   88 (105)
T ss_dssp             CCEEEEEEECSCHHHHHHHHHHHHHHTTTCCSSCEEEEEEETTTCHHHHHHTTCCSSSEEEEEESS--CCEEEESSCHHH
T ss_pred             CCeEEEEEEcCCcchHHHHHHHHHHHHHhcCCCceEEEEeecccCHhHHhhCCEEeccHhhhcCCC--cceeecChhHHH
Confidence            444555555544655555555555555543332578888999999999999999999999755443  346677877777


Q ss_pred             HHHHHHHHh
Q 026412          121 DFVSFINEK  129 (239)
Q Consensus       121 ~l~~~l~~~  129 (239)
                      .+..|.-+.
T Consensus        89 ql~~w~prw   97 (105)
T d1t4za_          89 QLANQLPQW   97 (105)
T ss_dssp             HHHHHHHHH
T ss_pred             HHhhhhhHh
Confidence            877777554

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.53  E-value=0.42  Score=33.24  Aligned_cols=36  Identities=14%  Similarity=0.220  Sum_probs=27.2

Q ss_pred             CCCcEEEEEE-CCCChHH-hhHhHHHHHHHHHccCCCC
Q 026412           39 QDRGALVEFY-APWCGHC-KNLAPTYEKVAAAFTLEDD   74 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C-~~~~~~~~~~a~~~~~~~~   74 (239)
                      +++.+++.|| ..||+.| .+..+.+.+....+...+.
T Consensus        30 ~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g~   67 (161)
T d1hd2a_          30 KGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGV   67 (161)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTC
T ss_pred             CCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHcCC
Confidence            5778888888 8999999 5678888877776654443

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.83  E-value=0.46  Score=29.77  Aligned_cols=36  Identities=8%  Similarity=0.102  Sum_probs=25.4

Q ss_pred             EEEEECCCCh------HHhhHhHHHHHHHHHccCCCCeEEEEEeCccchh
Q 026412           44 LVEFYAPWCG------HCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKD   87 (239)
Q Consensus        44 lV~F~a~wC~------~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~   87 (239)
                      ++.|+++||+      .|.++...++..        ++.+..+|++.+++
T Consensus         4 i~vy~ts~~~~~~~~~~~~r~~~lL~~~--------~I~y~~iDi~~d~~   45 (93)
T d1t1va_           4 LRVYSTSVTGSREIKSQQSEVTRILDGK--------RIQYQLVDISQDNA   45 (93)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHHHT--------TCCCEEEETTSCHH
T ss_pred             EEEEEccCcCChhhHHHHHHHHHHHHHC--------CCceEEEEecCchh
Confidence            5678999995      788876655532        46777888876543

>d1a8ya3 c.47.1.3 (A:229-347) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=88.99  E-value=1.9  Score=27.84  Aligned_cols=103  Identities=14%  Similarity=0.152  Sum_probs=73.8

Q ss_pred             EcChhhHHHHh--cCCCcEEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHH----HHcCCC-CCCe
Q 026412           27 VLTEDNFEKEV--GQDRGALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLA----EKYGVS-GFPT   99 (239)
Q Consensus        27 ~l~~~~f~~~~--~~~k~vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~----~~~~i~-~~Pt   99 (239)
                      .+...++-+.=  .-....+|.|--+.-+.-.++.+.+.++|+.+..++++.|+-||-+.-+-+.    +-|+|. .-|.
T Consensus         4 Kl~~e~m~e~W~dd~~g~~IvAFaee~d~dG~eFl~ilk~vA~~nt~n~~LsivWIDPD~FPlm~~yWe~tF~IDl~~Pq   83 (119)
T d1a8ya3           4 KLKPESMYETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQ   83 (119)
T ss_dssp             ECCTTTHHHHHTCCBTTEEEEEECCTTSHHHHHHHHHHHHHHHHSTTCSSCCEEEECGGGCTTTHHHHHHHHTCCTTSCE
T ss_pred             ccchHHHHHHHhcccCCceEEEEecCCCccHHHHHHHHHHHHHHcCcCCCceEEEECCcccchHHHHHHHhcCCCCCCCc
Confidence            34445544443  3345677778778889999999999999999998989999999998765433    457776 4699


Q ss_pred             EEEEeCCCcCccccC-----CCCCHHHHHHHHHHh
Q 026412          100 LKFFPKGNKDGEEYG-----GGRDLEDFVSFINEK  129 (239)
Q Consensus       100 ~~~~~~g~~~~~~~~-----g~~~~~~l~~~l~~~  129 (239)
                      +-+..-.....+-|.     ...+.+++.+||.+.
T Consensus        84 IGVVdv~dadSvW~~~~~~~d~~t~~~Le~WiedV  118 (119)
T d1a8ya3          84 IGVVNVTDADSVWMEMDDEEDLPSAEELEDWLEDV  118 (119)
T ss_dssp             EEEEETTTCCEEECC-------CCHHHHHHHHHHH
T ss_pred             eeeEecccCcceeeecccccccccHHHHHHHHHHh
Confidence            998875544333222     235899999999764

>d1z9ha2 c.47.1.5 (A:100-212) Microsomal prostaglandin E synthase-2 {Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Microsomal prostaglandin E synthase-2
species: Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]

Probab=87.17  E-value=0.72  Score=29.94  Aligned_cols=76  Identities=12%  Similarity=0.100  Sum_probs=45.0

Q ss_pred             EEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccchhHHHHcCCCCCCeEEEEeCCCcCccccCCCCCHHHHH
Q 026412           44 LVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKYKDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRDLEDFV  123 (239)
Q Consensus        44 lV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~  123 (239)
                      +..+..++||+|++..-.+...  ..    .+....+|......+ ..-+...+|+++.-.+++.  ..   -.+...+.
T Consensus         3 i~LY~~~~sP~~~kvr~~L~~k--~l----~~~~~~v~~~~~~~~-~~~~~~~vP~l~~~~~~~g--~~---i~eS~~Ii   70 (113)
T d1z9ha2           3 LTLYQYKTCPFCSKVRAFLDFH--AL----PYQVVEVNPVLRAEI-KFSSYRKVPILVAQEGESS--QQ---LNDSSVII   70 (113)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT--TC----CEEEEECCTTTCGGG-TTCSCCSSCEEEEEETTEE--EE---ECSHHHHH
T ss_pred             EEEEcCCCChHHHHHHHHHHHc--CC----eeEEeccCcccchhh-ccCccccccccccccCCCc--eE---eecHHHHH
Confidence            4567789999999987655532  11    244555555444433 2234456898654433211  11   24788899


Q ss_pred             HHHHHhhC
Q 026412          124 SFINEKCG  131 (239)
Q Consensus       124 ~~l~~~~~  131 (239)
                      +||.+..+
T Consensus        71 ~YL~~~~~   78 (113)
T d1z9ha2          71 SALKTYLV   78 (113)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHCC
Confidence            99987664

>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Bacteriophage T4 [TaxId: 10665]

Probab=85.32  E-value=0.13  Score=32.09  Aligned_cols=45  Identities=16%  Similarity=0.112  Sum_probs=25.7

Q ss_pred             CCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc-----h----hHHHH-----cCCCCCCeEEE
Q 026412           50 PWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY-----K----DLAEK-----YGVSGFPTLKF  102 (239)
Q Consensus        50 ~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~-----~----~l~~~-----~~i~~~Pt~~~  102 (239)
                      |.||+|.+....+.+.        ++.+..+++++.     .    ++.++     .+...+|.+++
T Consensus        12 ~~C~~C~~AK~lL~~~--------~i~y~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~TvPqIfi   70 (87)
T d1abaa_          12 HKCGPCDNAKRLLTVK--------KQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFA   70 (87)
T ss_dssp             SCCHHHHHHHHHHHHT--------TCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEEC
T ss_pred             CCChhHHHHHHHHHHc--------CCCceeccccccccccCHHHHHHHHHHhcccCCCCceeCeEEe
Confidence            4599999986554432        355556665422     1    22233     35567998743

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

Probab=83.43  E-value=1.6  Score=30.06  Aligned_cols=43  Identities=7%  Similarity=0.240  Sum_probs=28.5

Q ss_pred             CCCcEEEEEE-CCCChHH-hhHhHHHHHHHHHccCCC--CeEEEEEe
Q 026412           39 QDRGALVEFY-APWCGHC-KNLAPTYEKVAAAFTLED--DVVVANLD   81 (239)
Q Consensus        39 ~~k~vlV~F~-a~wC~~C-~~~~~~~~~~a~~~~~~~--~v~~~~vd   81 (239)
                      +++++++.|| ..|++.| .+..|.+....+.+...+  .+..+.+|
T Consensus        34 ~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~g~~~v~~isvd   80 (162)
T d1tp9a1          34 AGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVN   80 (162)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             CCCeEEEEEEecccchhhhhhcchHHHHhhhHHHHcCCcceeeeecc
Confidence            5677888877 8999999 577777777666544333  34444443

>d1r5aa2 c.47.1.5 (A:2-86) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]

Probab=81.28  E-value=2.3  Score=25.84  Aligned_cols=75  Identities=16%  Similarity=0.205  Sum_probs=46.6

Q ss_pred             EEEEEECCCChHHhhHhHHHHHHHHHccCCCCeEEEEEeCccc----hhHHHHcCCCCCCeEEEEeCCCcCccccCCCCC
Q 026412           43 ALVEFYAPWCGHCKNLAPTYEKVAAAFTLEDDVVVANLDADKY----KDLAEKYGVSGFPTLKFFPKGNKDGEEYGGGRD  118 (239)
Q Consensus        43 vlV~F~a~wC~~C~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~  118 (239)
                      .+|.|+.+.|++|++..=.+++    ..  -.+....||....    +++.+......+|++.  .+| ...      ..
T Consensus         1 t~iLY~~~~S~~~~~v~~~l~e----~g--i~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~--~~~-~~l------~E   65 (85)
T d1r5aa2           1 TTVLYYLPASPPCRSVLLLAKM----IG--VELDLKVLNIMEGEQLKPDFVELNPQHCIPTMD--DHG-LVL------WE   65 (85)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHH----TT--CCEEEEECCTTTTGGGSHHHHTTCTTCCSSEEE--ETT-EEE------EC
T ss_pred             CEEEEcCCCCHhHHHHHHHHHH----cC--CCCEEEEecCCCcccCCHHHHHHHhcCCCCEEE--Ecc-cce------ec
Confidence            3788999999999997644433    22  2466777776533    2333332334699875  343 211      26


Q ss_pred             HHHHHHHHHHhhCC
Q 026412          119 LEDFVSFINEKCGT  132 (239)
Q Consensus       119 ~~~l~~~l~~~~~~  132 (239)
                      ...+..||.+..++
T Consensus        66 S~aI~~YL~~~~~~   79 (85)
T d1r5aa2          66 SRVILSYLVSAYGK   79 (85)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhCC
Confidence            77899999877654